BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780554|ref|YP_003064967.1| Holliday junction resolvase
[Candidatus Liberibacter asiaticus str. psy62]
         (169 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done


Results from round 1


>gi|254780554|ref|YP_003064967.1| Holliday junction resolvase [Candidatus Liberibacter asiaticus str.
           psy62]
 gi|254040231|gb|ACT57027.1| Holliday junction resolvase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 169

 Score =  350 bits (898), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 169/169 (100%), Positives = 169/169 (100%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI
Sbjct: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
           KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH
Sbjct: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQD 169
           GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQD
Sbjct: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQD 169


>gi|315122881|ref|YP_004063370.1| Holliday junction resolvase [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313496283|gb|ADR52882.1| Holliday junction resolvase [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 168

 Score =  284 bits (727), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 137/166 (82%), Positives = 148/166 (89%)

Query: 2   RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           RKSIRIIGIDPGLRRTGWGI+D  GDNLCFVSSGT+VSC +QSLA RL QLYEGL D+++
Sbjct: 3   RKSIRIIGIDPGLRRTGWGIIDAVGDNLCFVSSGTVVSCAQQSLAVRLRQLYEGLADIMR 62

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
           ++ PEEAAVEQVFVNKDAVATLKLGQARAIAILSPAL  I VSEYAPNTIKKAVIGVGHG
Sbjct: 63  DFHPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALTGISVSEYAPNTIKKAVIGVGHG 122

Query: 122 DKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
           DK+QIHMMLKML+P   FKGKDAADALAIAVCHA+H N   YKI S
Sbjct: 123 DKRQIHMMLKMLIPGIMFKGKDAADALAIAVCHAHHTNYNRYKIES 168


>gi|13473342|ref|NP_104909.1| Holliday junction resolvase [Mesorhizobium loti MAFF303099]
 gi|20978750|sp|Q98F72|RUVC_RHILO RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|14024091|dbj|BAB50695.1| Holliday junction nuclease; RuvC [Mesorhizobium loti MAFF303099]
          Length = 169

 Score =  226 bits (575), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 109/166 (65%), Positives = 135/166 (81%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M  +IRIIGIDPGLRRTGWGIV+  G++L FV+SGT+ S  + +LA RLCQL++GL +V+
Sbjct: 1   MGDAIRIIGIDPGLRRTGWGIVESLGNSLRFVASGTVRSEDKAALATRLCQLHDGLAEVL 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
               P EAAVEQ FVNKDAVATLKLGQAR IA+L PA A + V+EYAPN +KKAVIGVGH
Sbjct: 61  HAAMPHEAAVEQTFVNKDAVATLKLGQARGIAMLVPARAGLVVAEYAPNAVKKAVIGVGH 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
           GDKKQIHMM+K+L+P++ F  + AADALAIA+CHA+H  S  Y++A
Sbjct: 121 GDKKQIHMMVKVLLPKATFDTEHAADALAIAICHAHHRQSAAYRMA 166


>gi|319781016|ref|YP_004140492.1| crossover junction endodeoxyribonuclease RuvC [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
 gi|317166904|gb|ADV10442.1| crossover junction endodeoxyribonuclease RuvC [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
          Length = 169

 Score =  225 bits (574), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 108/166 (65%), Positives = 136/166 (81%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M ++IRIIGIDPGLRRTGWGIV+  G++L F++SGT+ S  + +LA RLCQL++GL +V+
Sbjct: 1   MAEAIRIIGIDPGLRRTGWGIVESLGNSLRFIASGTVKSDDKAALATRLCQLHDGLAEVL 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
               P EAAVEQ FVNKDAVATLKLGQAR IA+L PA A + V+EYAPN +KKAVIGVGH
Sbjct: 61  HAAMPHEAAVEQTFVNKDAVATLKLGQARGIAMLVPARAGLVVAEYAPNAVKKAVIGVGH 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
           GDKKQIHMM+K+L+P++ F  + AADALAIA+CHA+H  S  Y++A
Sbjct: 121 GDKKQIHMMVKVLLPKAVFDTEHAADALAIAICHAHHRQSVAYRMA 166


>gi|260467056|ref|ZP_05813236.1| crossover junction endodeoxyribonuclease RuvC [Mesorhizobium
           opportunistum WSM2075]
 gi|259029165|gb|EEW30461.1| crossover junction endodeoxyribonuclease RuvC [Mesorhizobium
           opportunistum WSM2075]
          Length = 170

 Score =  225 bits (573), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 109/167 (65%), Positives = 136/167 (81%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M  +IRIIGIDPGLRRTGWGIV+  G++L FV+SGT+ S  + +LA RLCQL++GL +V+
Sbjct: 1   MGDAIRIIGIDPGLRRTGWGIVESLGNSLRFVASGTVRSEDKAALATRLCQLHDGLAEVL 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
               P EAAVEQ FVNKDAVATLKLGQAR IA+L PA A + V+EYAPN +KKAVIGVGH
Sbjct: 61  HAAMPHEAAVEQTFVNKDAVATLKLGQARGIAMLVPARAGLVVAEYAPNAVKKAVIGVGH 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
           GDKKQIHMM+K+L+P++ F  + AADALAIA+CHA+H  S  Y++A+
Sbjct: 121 GDKKQIHMMVKVLLPKATFDTEHAADALAIAICHAHHRQSVAYRMAA 167


>gi|163758806|ref|ZP_02165893.1| crossover junction endodeoxyribonuclease RuvC [Hoeflea
           phototrophica DFL-43]
 gi|162284096|gb|EDQ34380.1| crossover junction endodeoxyribonuclease RuvC [Hoeflea
           phototrophica DFL-43]
          Length = 168

 Score =  218 bits (556), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 106/168 (63%), Positives = 133/168 (79%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M ++IRIIG+DPGLR TGWG++D  G++L FV+SGT+ S  +  LA RL QLYEGL  VI
Sbjct: 1   MAETIRIIGVDPGLRNTGWGVIDSTGNSLRFVASGTVKSDNKLDLASRLNQLYEGLEGVI 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
            + RP EAAVE  FVNKDA ATLKLGQAR IA+L+PA A + V+EYAPN +KKAVIGVGH
Sbjct: 61  HSHRPFEAAVENTFVNKDATATLKLGQARGIAMLAPARAGLRVAEYAPNAVKKAVIGVGH 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
           GDKKQI MM+KML+P++ F    AADALAIA+CHA+H  S  +++A++
Sbjct: 121 GDKKQILMMVKMLIPKATFDSDHAADALAIAICHAHHRTSPAWRMAAE 168


>gi|121602663|ref|YP_988489.1| Holliday junction resolvase [Bartonella bacilliformis KC583]
 gi|166231580|sp|A1UR86|RUVC_BARBK RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|120614840|gb|ABM45441.1| crossover junction endodeoxyribonuclease RuvC [Bartonella
           bacilliformis KC583]
          Length = 167

 Score =  218 bits (556), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 104/165 (63%), Positives = 132/165 (80%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M + IRIIGIDPGLRRTGWGI+D  G+++ FV+SGT+ S  + +LA RL QL++GL++V+
Sbjct: 1   MVEKIRIIGIDPGLRRTGWGIIDFLGNHMHFVASGTLHSDAQLNLASRLHQLHKGLSEVV 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             + P EAAVE VFVNKDA ATLKLGQARAIA+L PA A +PV EYAPNTIKK+VIGVGH
Sbjct: 61  HQFMPHEAAVEHVFVNKDATATLKLGQARAIALLVPAQAGLPVFEYAPNTIKKSVIGVGH 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
           G K+QIHMM+K L+P + F G DAADALA+ +CH+ H  +  ++I
Sbjct: 121 GAKEQIHMMVKRLLPRAEFDGHDAADALALVICHSAHRTNFAHRI 165


>gi|86359069|ref|YP_470961.1| Holliday junction resolvase [Rhizobium etli CFN 42]
 gi|123724728|sp|Q2K4K2|RUVC_RHIEC RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|86283171|gb|ABC92234.1| crossover junction endoribonuclease protein [Rhizobium etli CFN 42]
          Length = 169

 Score =  216 bits (551), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 112/165 (67%), Positives = 138/165 (83%), Gaps = 2/165 (1%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M+ +IRIIGIDPGLRRTGWGI+D  G++L FV+SGT+ S     LA RLCQL++GL D++
Sbjct: 1   MQNTIRIIGIDPGLRRTGWGIIDTLGNSLKFVASGTVTSDGEMDLASRLCQLHDGLADIV 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
              +P+EAAVEQ FVNKDAVATLKLGQAR IA+L PA A +PVSEYAPN +KKAVIGVGH
Sbjct: 61  HAHKPDEAAVEQTFVNKDAVATLKLGQARGIAMLVPARAGLPVSEYAPNAVKKAVIGVGH 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
           G+K+QIHMMLK+LMP++ FKG DAADALAIA+CHA+  N G +++
Sbjct: 121 GEKQQIHMMLKILMPKAEFKGDDAADALAIAICHAH--NRGGHRM 163


>gi|222086990|ref|YP_002545524.1| crossover junction endodeoxyribonuclease RuvC [Agrobacterium
           radiobacter K84]
 gi|254767453|sp|B9J9J2|RUVC_AGRRK RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|221724438|gb|ACM27594.1| crossover junction endodeoxyribonuclease RuvC [Agrobacterium
           radiobacter K84]
          Length = 170

 Score =  216 bits (550), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 109/167 (65%), Positives = 139/167 (83%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M+ +IRIIGIDPGLRRTGWG++D  G++L FV+SGT+ S     LA RLCQL++GL D++
Sbjct: 1   MQNTIRIIGIDPGLRRTGWGVIDTLGNSLRFVASGTVTSDGDMDLASRLCQLHDGLADIV 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             ++P+EAAVEQ FVNKDAVATLKLGQAR IA+L PA A +PV+EYAPN +KKAVIGVGH
Sbjct: 61  HGYKPDEAAVEQTFVNKDAVATLKLGQARGIAMLVPARAGLPVAEYAPNAVKKAVIGVGH 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
           G+K+QIHMMLK+LMP++ FKG DAADALAIA+CHA++  +   + A+
Sbjct: 121 GEKQQIHMMLKILMPKAEFKGNDAADALAIAICHAHNRGANRLRQAA 167


>gi|116253725|ref|YP_769563.1| Holliday junction resolvase [Rhizobium leguminosarum bv. viciae
           3841]
 gi|241206201|ref|YP_002977297.1| Holliday junction resolvase [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|123081788|sp|Q1MC56|RUVC_RHIL3 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|115258373|emb|CAK09476.1| putative crossover Holliday junction endodeoxyribonuclease RuvC
           [Rhizobium leguminosarum bv. viciae 3841]
 gi|240860091|gb|ACS57758.1| crossover junction endodeoxyribonuclease RuvC [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 169

 Score =  215 bits (548), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 109/166 (65%), Positives = 139/166 (83%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M+ +IRI+GIDPGLRRTGWGI++ +G++L FV+SGT+ S     LA RLCQL++GL +++
Sbjct: 1   MQNTIRIVGIDPGLRRTGWGIIETSGNSLRFVASGTVTSDGDMDLASRLCQLHDGLAEIV 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
            +++P+EAAVEQ FVNKDAVATLKLGQAR IA+L PA A +PVSEYAPN +KKAVIGVGH
Sbjct: 61  HSYKPDEAAVEQTFVNKDAVATLKLGQARGIAMLVPARAGLPVSEYAPNAVKKAVIGVGH 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
           G+K+QIHMMLK+LMP+  FKG DAADALAIA+CHA++  S   + A
Sbjct: 121 GEKQQIHMMLKILMPKVEFKGNDAADALAIAICHAHNRGSNRMRQA 166


>gi|332716454|ref|YP_004443920.1| crossover junction endodeoxyribonuclease RuvC [Agrobacterium sp.
           H13-3]
 gi|325063139|gb|ADY66829.1| crossover junction endodeoxyribonuclease RuvC [Agrobacterium sp.
           H13-3]
          Length = 170

 Score =  213 bits (541), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 111/166 (66%), Positives = 139/166 (83%), Gaps = 2/166 (1%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M+K+IRIIGIDPGLRRTGWG+++  G++L FV+SGT+ S     LA RLCQL++GL D +
Sbjct: 1   MQKTIRIIGIDPGLRRTGWGVIETFGNSLRFVASGTVTSDGDMDLASRLCQLHDGLADTV 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
            +++P+EAAVEQ FVNKDAVATLKLGQAR IA+L PA A +PV EYAPN +KKAVIGVGH
Sbjct: 61  HSYQPDEAAVEQTFVNKDAVATLKLGQARGIAMLVPARAGLPVFEYAPNAVKKAVIGVGH 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
           G+K+QIHMMLK+LMP++ FKG DAADALAIA+CHA+  N G  ++A
Sbjct: 121 GEKQQIHMMLKILMPKAEFKGNDAADALAIAICHAH--NRGGDRMA 164


>gi|15891224|ref|NP_356896.1| Holliday junction resolvase [Agrobacterium tumefaciens str. C58]
 gi|22096148|sp|Q8U9K4|RUVC_AGRT5 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|15159587|gb|AAK89681.1| Holliday Junction Resolvase RuvC [Agrobacterium tumefaciens str.
           C58]
          Length = 170

 Score =  212 bits (539), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 108/157 (68%), Positives = 135/157 (85%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M+K+IRIIGIDPGLRRTGWG++D  G++L FV+SGT+ S     LA RLCQL++GL +++
Sbjct: 1   MQKTIRIIGIDPGLRRTGWGVIDTLGNSLRFVASGTVTSDGDMDLASRLCQLHDGLAEIV 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
            + +P+EAAVEQ FVNKDAVATLKLGQAR IA+L PA A +PV EYAPN +KKAVIGVGH
Sbjct: 61  HSHQPDEAAVEQTFVNKDAVATLKLGQARGIAMLVPARAGLPVFEYAPNAVKKAVIGVGH 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYH 157
           G+K+QIHMMLK+LMP++ FKG DAADALAIA+CHA++
Sbjct: 121 GEKQQIHMMLKILMPKAEFKGNDAADALAIAICHAHN 157


>gi|114704963|ref|ZP_01437871.1| Holliday junction resolvase [Fulvimarina pelagi HTCC2506]
 gi|114539748|gb|EAU42868.1| Holliday junction resolvase [Fulvimarina pelagi HTCC2506]
          Length = 172

 Score =  211 bits (538), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 109/162 (67%), Positives = 134/162 (82%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           IRIIGIDPGLRRTGWGIV+  G++L FVSSGT+ S  +  LA RL QL++GL+++I + R
Sbjct: 7   IRIIGIDPGLRRTGWGIVETQGNSLRFVSSGTVTSDPKCDLASRLRQLHDGLSEIIHSHR 66

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+EAAVEQ FVNKDAVATLKLGQAR IA+L P+LA IPV+EYAPN +KKAVIGVGHGDKK
Sbjct: 67  PDEAAVEQTFVNKDAVATLKLGQARGIALLVPSLAGIPVAEYAPNAVKKAVIGVGHGDKK 126

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
           QIHMM+ +LMP++ F   DAADA+AIA+CH +H  S   ++A
Sbjct: 127 QIHMMVNVLMPKATFDTDDAADAIAIAICHTHHRQSAQSRLA 168


>gi|153008542|ref|YP_001369757.1| Holliday junction resolvase [Ochrobactrum anthropi ATCC 49188]
 gi|166233276|sp|A6WY74|RUVC_OCHA4 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|151560430|gb|ABS13928.1| crossover junction endodeoxyribonuclease RuvC [Ochrobactrum
           anthropi ATCC 49188]
          Length = 172

 Score =  211 bits (538), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 106/160 (66%), Positives = 130/160 (81%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M+++IRIIGIDPGLRRTGWGIV+  G++L F+ SGT+ S     LA RLCQL+EGL+ V+
Sbjct: 1   MKETIRIIGIDPGLRRTGWGIVESLGNSLHFIGSGTVTSNAEMDLASRLCQLHEGLSKVL 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             + P EAAVE  FVNKDA ATLKLGQAR IA+L+PA A +PV+EYAPN +KKAVIGVGH
Sbjct: 61  HEYMPHEAAVEHTFVNKDATATLKLGQARGIALLAPAQAGLPVAEYAPNAVKKAVIGVGH 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           G+K+QIHMM+K+LMP + F   DAADALAIA+CHA+H  S
Sbjct: 121 GEKQQIHMMVKVLMPRASFDTSDAADALAIAICHAHHRQS 160


>gi|209550793|ref|YP_002282710.1| Holliday junction resolvase [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|226698762|sp|B5ZP76|RUVC_RHILW RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|209536549|gb|ACI56484.1| crossover junction endodeoxyribonuclease RuvC [Rhizobium
           leguminosarum bv. trifolii WSM2304]
          Length = 169

 Score =  211 bits (536), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 110/166 (66%), Positives = 135/166 (81%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M+ +IRI+GIDPGLRRTGWGI+D  G++L FV+SGT+ S     LA RLCQL++GL +V+
Sbjct: 1   MQNTIRIVGIDPGLRRTGWGIIDTLGNSLRFVASGTVTSDGDMDLASRLCQLHDGLAEVV 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             ++P+EAAVEQ FVNKDAVATLKLGQAR IA+L PA A + VSEYAPN +KKAVIGVGH
Sbjct: 61  HTYKPDEAAVEQTFVNKDAVATLKLGQARGIAMLVPARAGLRVSEYAPNAVKKAVIGVGH 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
           G+K QIHMMLK+LMP+  FKG DAADALAIA+CHA++  S   + A
Sbjct: 121 GEKHQIHMMLKILMPKVEFKGDDAADALAIAICHAHNRGSNRMREA 166


>gi|163845284|ref|YP_001622939.1| Holliday junction resolvase [Brucella suis ATCC 23445]
 gi|189046059|sp|A9WWI1|RUVC_BRUSI RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|163676007|gb|ABY40117.1| crossover junction endodeoxyribonuclease RuvC [Brucella suis ATCC
           23445]
          Length = 173

 Score =  211 bits (536), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 106/160 (66%), Positives = 130/160 (81%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M+++IRIIGIDPGLRRTGWGIV+  G++L F+ SGT+ S     LA RLCQL+EGL+ V+
Sbjct: 1   MKETIRIIGIDPGLRRTGWGIVESLGNSLHFIGSGTVTSNAEMDLASRLCQLHEGLSKVL 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             + P EAAVE  FVNKDA ATLKLGQAR IA+L+PA A +PV+EYAPN +KKAVIGVGH
Sbjct: 61  HEFMPHEAAVEHTFVNKDATATLKLGQARGIALLAPAQAGLPVTEYAPNAVKKAVIGVGH 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           G+K+QIHMM+K+LMP + F   DAADALAIA+CHA+H  S
Sbjct: 121 GEKQQIHMMVKVLMPRASFDTSDAADALAIAICHAHHRQS 160


>gi|218659656|ref|ZP_03515586.1| Holliday junction resolvase [Rhizobium etli IE4771]
          Length = 169

 Score =  211 bits (536), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 110/166 (66%), Positives = 135/166 (81%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M+ +IRI+GIDPGLRRTGWGI+D  G++L FV+SGT+ S     LA RLCQL++GL +V+
Sbjct: 1   MQNTIRIVGIDPGLRRTGWGIIDTLGNSLRFVASGTVTSDGDMDLASRLCQLHDGLAEVV 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             ++P+EAAVEQ FVNKDAVATLKLGQAR IA+L PA A + VSEYAPN +KKAVIGVGH
Sbjct: 61  HAYKPDEAAVEQTFVNKDAVATLKLGQARGIAMLVPARAGLQVSEYAPNAVKKAVIGVGH 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
           G+K QIHMMLK+LMP+  FKG DAADALAIA+CHA++  S   + A
Sbjct: 121 GEKHQIHMMLKILMPKVEFKGDDAADALAIAICHAHNRGSNRMRQA 166


>gi|17986615|ref|NP_539249.1| Holliday junction resolvase [Brucella melitensis bv. 1 str. 16M]
 gi|62290576|ref|YP_222369.1| Holliday junction resolvase [Brucella abortus bv. 1 str. 9-941]
 gi|82700492|ref|YP_415066.1| Holliday junction resolvase [Brucella melitensis biovar Abortus
           2308]
 gi|148560343|ref|YP_001259557.1| Holliday junction resolvase [Brucella ovis ATCC 25840]
 gi|161619633|ref|YP_001593520.1| Holliday junction resolvase [Brucella canis ATCC 23365]
 gi|189024794|ref|YP_001935562.1| Holliday junction resolvase [Brucella abortus S19]
 gi|225628273|ref|ZP_03786307.1| crossover junction endodeoxyribonuclease RuvC [Brucella ceti str.
           Cudo]
 gi|225853160|ref|YP_002733393.1| Holliday junction resolvase [Brucella melitensis ATCC 23457]
 gi|237816081|ref|ZP_04595077.1| crossover junction endodeoxyribonuclease RuvC [Brucella abortus
           str. 2308 A]
 gi|239832791|ref|ZP_04681120.1| crossover junction endodeoxyribonuclease RuvC [Ochrobactrum
           intermedium LMG 3301]
 gi|254689872|ref|ZP_05153126.1| Holliday junction resolvase [Brucella abortus bv. 6 str. 870]
 gi|254698023|ref|ZP_05159851.1| Holliday junction resolvase [Brucella abortus bv. 2 str. 86/8/59]
 gi|254700365|ref|ZP_05162193.1| Holliday junction resolvase [Brucella suis bv. 5 str. 513]
 gi|254703483|ref|ZP_05165311.1| Holliday junction resolvase [Brucella suis bv. 3 str. 686]
 gi|254708428|ref|ZP_05170256.1| Holliday junction resolvase [Brucella pinnipedialis M163/99/10]
 gi|254708718|ref|ZP_05170529.1| Holliday junction resolvase [Brucella pinnipedialis B2/94]
 gi|254714565|ref|ZP_05176376.1| Holliday junction resolvase [Brucella ceti M644/93/1]
 gi|254717462|ref|ZP_05179273.1| Holliday junction resolvase [Brucella ceti M13/05/1]
 gi|254719707|ref|ZP_05181518.1| Holliday junction resolvase [Brucella sp. 83/13]
 gi|254730907|ref|ZP_05189485.1| Holliday junction resolvase [Brucella abortus bv. 4 str. 292]
 gi|256030244|ref|ZP_05443858.1| Holliday junction resolvase [Brucella pinnipedialis M292/94/1]
 gi|256045314|ref|ZP_05448208.1| Holliday junction resolvase [Brucella melitensis bv. 1 str. Rev.1]
 gi|256061741|ref|ZP_05451878.1| Holliday junction resolvase [Brucella neotomae 5K33]
 gi|256114272|ref|ZP_05455017.1| Holliday junction resolvase [Brucella melitensis bv. 3 str. Ether]
 gi|256258126|ref|ZP_05463662.1| Holliday junction resolvase [Brucella abortus bv. 9 str. C68]
 gi|256263349|ref|ZP_05465881.1| crossover junction endodeoxyribonuclease ruvC [Brucella melitensis
           bv. 2 str. 63/9]
 gi|256370113|ref|YP_003107624.1| Holliday junction resolvase [Brucella microti CCM 4915]
 gi|260167919|ref|ZP_05754730.1| Holliday junction resolvase [Brucella sp. F5/99]
 gi|260547180|ref|ZP_05822918.1| crossover junction endodeoxyribonuclease ruvC [Brucella abortus
           NCTC 8038]
 gi|260565795|ref|ZP_05836278.1| crossover junction endodeoxyribonuclease ruvC [Brucella melitensis
           bv. 1 str. 16M]
 gi|260568789|ref|ZP_05839257.1| crossover junction endodeoxyribonuclease ruvC [Brucella suis bv. 4
           str. 40]
 gi|260755404|ref|ZP_05867752.1| crossover junction endodeoxyribonuclease ruvC [Brucella abortus bv.
           6 str. 870]
 gi|260758626|ref|ZP_05870974.1| crossover junction endodeoxyribonuclease ruvC [Brucella abortus bv.
           4 str. 292]
 gi|260762458|ref|ZP_05874795.1| crossover junction endodeoxyribonuclease ruvC [Brucella abortus bv.
           2 str. 86/8/59]
 gi|260884419|ref|ZP_05896033.1| crossover junction endodeoxyribonuclease ruvC [Brucella abortus bv.
           9 str. C68]
 gi|261219294|ref|ZP_05933575.1| crossover junction endodeoxyribonuclease ruvC [Brucella ceti
           M13/05/1]
 gi|261315927|ref|ZP_05955124.1| crossover junction endodeoxyribonuclease ruvC [Brucella
           pinnipedialis M163/99/10]
 gi|261316210|ref|ZP_05955407.1| crossover junction endodeoxyribonuclease ruvC [Brucella
           pinnipedialis B2/94]
 gi|261322355|ref|ZP_05961552.1| crossover junction endodeoxyribonuclease ruvC [Brucella ceti
           M644/93/1]
 gi|261325745|ref|ZP_05964942.1| crossover junction endodeoxyribonuclease ruvC [Brucella neotomae
           5K33]
 gi|261750860|ref|ZP_05994569.1| crossover junction endodeoxyribonuclease ruvC [Brucella suis bv. 5
           str. 513]
 gi|261754113|ref|ZP_05997822.1| crossover junction endodeoxyribonuclease ruvC [Brucella suis bv. 3
           str. 686]
 gi|261757358|ref|ZP_06001067.1| crossover junction endodeoxyribonuclease ruvC [Brucella sp. F5/99]
 gi|265984722|ref|ZP_06097457.1| crossover junction endodeoxyribonuclease ruvC [Brucella sp. 83/13]
 gi|265987272|ref|ZP_06099829.1| crossover junction endodeoxyribonuclease ruvC [Brucella
           pinnipedialis M292/94/1]
 gi|265991739|ref|ZP_06104296.1| crossover junction endodeoxyribonuclease ruvC [Brucella melitensis
           bv. 1 str. Rev.1]
 gi|265995576|ref|ZP_06108133.1| crossover junction endodeoxyribonuclease ruvC [Brucella melitensis
           bv. 3 str. Ether]
 gi|294850955|ref|ZP_06791631.1| crossover junction endodeoxyribonuclease RuvC [Brucella sp. NVSL
           07-0026]
 gi|297248975|ref|ZP_06932683.1| crossover junction endodeoxyribonuclease RuvC [Brucella abortus bv.
           5 str. B3196]
 gi|306837834|ref|ZP_07470696.1| crossover junction endodeoxyribonuclease RuvC [Brucella sp. NF
           2653]
 gi|306841423|ref|ZP_07474125.1| crossover junction endodeoxyribonuclease RuvC [Brucella sp. BO2]
 gi|306844696|ref|ZP_07477281.1| crossover junction endodeoxyribonuclease RuvC [Brucella sp. BO1]
 gi|20978747|sp|Q8YIV7|RUVC_BRUME RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|81309381|sp|Q57BH6|RUVC_BRUAB RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|123768482|sp|Q2YRD0|RUVC_BRUA2 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|166231584|sp|A5VS60|RUVC_BRUO2 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|189046058|sp|A9M7K2|RUVC_BRUC2 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|238689393|sp|B2S7E1|RUVC_BRUA1 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|254767463|sp|C0REW7|RUVC_BRUMB RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|17982228|gb|AAL51513.1| crossover junction endodeoxyribonuclease ruvc [Brucella melitensis
           bv. 1 str. 16M]
 gi|62196708|gb|AAX75008.1| RuvC, crossover junction endodeoxyribonuclease [Brucella abortus
           bv. 1 str. 9-941]
 gi|82616593|emb|CAJ11672.1| Crossover junction endodeoxyribonuclease RuvC [Brucella melitensis
           biovar Abortus 2308]
 gi|148371600|gb|ABQ61579.1| crossover junction endodeoxyribonuclease RuvC [Brucella ovis ATCC
           25840]
 gi|161336444|gb|ABX62749.1| crossover junction endodeoxyribonuclease RuvC [Brucella canis ATCC
           23365]
 gi|189020366|gb|ACD73088.1| Crossover junction endodeoxyribonuclease RuvC [Brucella abortus
           S19]
 gi|225616119|gb|EEH13167.1| crossover junction endodeoxyribonuclease RuvC [Brucella ceti str.
           Cudo]
 gi|225641525|gb|ACO01439.1| crossover junction endodeoxyribonuclease RuvC [Brucella melitensis
           ATCC 23457]
 gi|237788744|gb|EEP62956.1| crossover junction endodeoxyribonuclease RuvC [Brucella abortus
           str. 2308 A]
 gi|239825058|gb|EEQ96626.1| crossover junction endodeoxyribonuclease RuvC [Ochrobactrum
           intermedium LMG 3301]
 gi|256000276|gb|ACU48675.1| Holliday junction resolvase [Brucella microti CCM 4915]
 gi|260095545|gb|EEW79423.1| crossover junction endodeoxyribonuclease ruvC [Brucella abortus
           NCTC 8038]
 gi|260151168|gb|EEW86263.1| crossover junction endodeoxyribonuclease ruvC [Brucella melitensis
           bv. 1 str. 16M]
 gi|260154173|gb|EEW89255.1| crossover junction endodeoxyribonuclease ruvC [Brucella suis bv. 4
           str. 40]
 gi|260668944|gb|EEX55884.1| crossover junction endodeoxyribonuclease ruvC [Brucella abortus bv.
           4 str. 292]
 gi|260672884|gb|EEX59705.1| crossover junction endodeoxyribonuclease ruvC [Brucella abortus bv.
           2 str. 86/8/59]
 gi|260675512|gb|EEX62333.1| crossover junction endodeoxyribonuclease ruvC [Brucella abortus bv.
           6 str. 870]
 gi|260873947|gb|EEX81016.1| crossover junction endodeoxyribonuclease ruvC [Brucella abortus bv.
           9 str. C68]
 gi|260924383|gb|EEX90951.1| crossover junction endodeoxyribonuclease ruvC [Brucella ceti
           M13/05/1]
 gi|261295045|gb|EEX98541.1| crossover junction endodeoxyribonuclease ruvC [Brucella ceti
           M644/93/1]
 gi|261295433|gb|EEX98929.1| crossover junction endodeoxyribonuclease ruvC [Brucella
           pinnipedialis B2/94]
 gi|261301725|gb|EEY05222.1| crossover junction endodeoxyribonuclease ruvC [Brucella neotomae
           5K33]
 gi|261304953|gb|EEY08450.1| crossover junction endodeoxyribonuclease ruvC [Brucella
           pinnipedialis M163/99/10]
 gi|261737342|gb|EEY25338.1| crossover junction endodeoxyribonuclease ruvC [Brucella sp. F5/99]
 gi|261740613|gb|EEY28539.1| crossover junction endodeoxyribonuclease ruvC [Brucella suis bv. 5
           str. 513]
 gi|261743866|gb|EEY31792.1| crossover junction endodeoxyribonuclease ruvC [Brucella suis bv. 3
           str. 686]
 gi|262766860|gb|EEZ12478.1| crossover junction endodeoxyribonuclease ruvC [Brucella melitensis
           bv. 3 str. Ether]
 gi|263002695|gb|EEZ15098.1| crossover junction endodeoxyribonuclease ruvC [Brucella melitensis
           bv. 1 str. Rev.1]
 gi|263093348|gb|EEZ17417.1| crossover junction endodeoxyribonuclease ruvC [Brucella melitensis
           bv. 2 str. 63/9]
 gi|264659469|gb|EEZ29730.1| crossover junction endodeoxyribonuclease ruvC [Brucella
           pinnipedialis M292/94/1]
 gi|264663314|gb|EEZ33575.1| crossover junction endodeoxyribonuclease ruvC [Brucella sp. 83/13]
 gi|294821598|gb|EFG38594.1| crossover junction endodeoxyribonuclease RuvC [Brucella sp. NVSL
           07-0026]
 gi|297174108|gb|EFH33465.1| crossover junction endodeoxyribonuclease RuvC [Brucella abortus bv.
           5 str. B3196]
 gi|306274868|gb|EFM56638.1| crossover junction endodeoxyribonuclease RuvC [Brucella sp. BO1]
 gi|306288529|gb|EFM59881.1| crossover junction endodeoxyribonuclease RuvC [Brucella sp. BO2]
 gi|306407073|gb|EFM63290.1| crossover junction endodeoxyribonuclease RuvC [Brucella sp. NF
           2653]
 gi|326409717|gb|ADZ66782.1| Crossover junction endodeoxyribonuclease RuvC [Brucella melitensis
           M28]
 gi|326539424|gb|ADZ87639.1| crossover junction endodeoxyribonuclease RuvC [Brucella melitensis
           M5-90]
          Length = 173

 Score =  211 bits (536), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 106/160 (66%), Positives = 130/160 (81%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M+++IRIIGIDPGLRRTGWGIV+  G++L F+ SGT+ S     LA RLCQL+EGL+ V+
Sbjct: 1   MKETIRIIGIDPGLRRTGWGIVESLGNSLHFIGSGTVTSNAEMDLASRLCQLHEGLSKVL 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             + P EAAVE  FVNKDA ATLKLGQAR IA+L+PA A +PV+EYAPN +KKAVIGVGH
Sbjct: 61  HEFMPHEAAVEHTFVNKDATATLKLGQARGIALLAPAQAGLPVAEYAPNAVKKAVIGVGH 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           G+K+QIHMM+K+LMP + F   DAADALAIA+CHA+H  S
Sbjct: 121 GEKQQIHMMVKVLMPRASFDTSDAADALAIAICHAHHRQS 160


>gi|218460451|ref|ZP_03500542.1| Holliday junction resolvase [Rhizobium etli Kim 5]
          Length = 169

 Score =  211 bits (536), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 110/166 (66%), Positives = 135/166 (81%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M+ +IRI+GIDPGLRRTGWGI+D  G++L FV+SGT+ S     LA RLCQL++GL +V+
Sbjct: 1   MQNTIRIVGIDPGLRRTGWGIIDTLGNSLRFVASGTVTSDGDMDLASRLCQLHDGLAEVV 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             ++P+EAAVEQ FVNKDAVATLKLGQAR IA+L PA A + VSEYAPN +KKAVIGVGH
Sbjct: 61  HAYKPDEAAVEQTFVNKDAVATLKLGQARGIAMLVPARAGMQVSEYAPNAVKKAVIGVGH 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
           G+K QIHMMLK+LMP+  FKG DAADALAIA+CHA++  S   + A
Sbjct: 121 GEKHQIHMMLKILMPKVEFKGDDAADALAIAICHAHNRGSNRMRQA 166


>gi|190893291|ref|YP_001979833.1| crossover holliday junction endodeoxyribonuclease [Rhizobium etli
           CIAT 652]
 gi|238692540|sp|B3PYZ1|RUVC_RHIE6 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|190698570|gb|ACE92655.1| crossover holliday junction endodeoxyribonuclease protein
           [Rhizobium etli CIAT 652]
 gi|327194144|gb|EGE61014.1| crossover holliday junction endodeoxyribonuclease protein
           [Rhizobium etli CNPAF512]
          Length = 169

 Score =  210 bits (535), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 110/166 (66%), Positives = 135/166 (81%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M+ +IRI+GIDPGLRRTGWGI+D  G++L FV+SGT+ S     LA RLCQL++GL +V+
Sbjct: 1   MQNTIRIVGIDPGLRRTGWGIIDTLGNSLRFVASGTVTSDGDMDLASRLCQLHDGLAEVV 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             ++P+EAAVEQ FVNKDAVATLKLGQAR IA+L PA A + VSEYAPN +KKAVIGVGH
Sbjct: 61  HAYKPDEAAVEQTFVNKDAVATLKLGQARGIAMLVPARAGLHVSEYAPNAVKKAVIGVGH 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
           G+K QIHMMLK+LMP+  FKG DAADALAIA+CHA++  S   + A
Sbjct: 121 GEKHQIHMMLKILMPKVEFKGDDAADALAIAICHAHNRGSNRMRQA 166


>gi|49476148|ref|YP_034189.1| Holliday junction resolvase [Bartonella henselae str. Houston-1]
 gi|81648456|sp|Q6G5Q9|RUVC_BARHE RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|49238956|emb|CAF28254.1| Holliday junction nuclease ruvC [Bartonella henselae str.
           Houston-1]
          Length = 169

 Score =  210 bits (534), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 106/163 (65%), Positives = 133/163 (81%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M ++IRIIGIDPGLRRTGWG++D +G+ L FV++GT+ S  R  LA RLCQLY+GLTD++
Sbjct: 1   MAETIRIIGIDPGLRRTGWGVIDFSGNRLQFVAAGTLTSDARCDLASRLCQLYKGLTDIL 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             + P+EAAVE VFVNKDA ATLKLGQARAIA+L+PA A +PV EYAPN +KK+VIGVGH
Sbjct: 61  HQFMPQEAAVEHVFVNKDATATLKLGQARAIALLAPAQANLPVFEYAPNKVKKSVIGVGH 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYY 163
           GDK+QIHMM+K+L+P + F   DAADALA+A+CH+ H     Y
Sbjct: 121 GDKEQIHMMVKVLLPRAEFDSSDAADALALALCHSTHRIGASY 163


>gi|222149651|ref|YP_002550608.1| Holliday junction resolvase [Agrobacterium vitis S4]
 gi|254767454|sp|B9JRI5|RUVC_AGRVS RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|221736633|gb|ACM37596.1| Holliday Junction Resolvase RuvC [Agrobacterium vitis S4]
          Length = 169

 Score =  210 bits (534), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 107/157 (68%), Positives = 134/157 (85%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M  +IRIIGIDPGLRRTGWG+++  G++L F++SGT++S     LA RLCQL++GL DV+
Sbjct: 1   MTSAIRIIGIDPGLRRTGWGVIETLGNSLRFIASGTVMSDGDMDLASRLCQLHDGLADVV 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
              +P+EAAVEQ FVNKDAVATLKLGQAR IA+L PA A +PV+EYAPN +KK+VIGVGH
Sbjct: 61  HLHQPDEAAVEQTFVNKDAVATLKLGQARGIAMLVPARAGLPVAEYAPNAVKKSVIGVGH 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYH 157
           GDK+QIHMMLK+LMP++ FKG DAADALAIA+CHA++
Sbjct: 121 GDKQQIHMMLKILMPKAEFKGNDAADALAIAICHAHN 157


>gi|227823321|ref|YP_002827293.1| Holliday junction resolvase [Sinorhizobium fredii NGR234]
 gi|254767481|sp|C3MIH7|RUVC_RHISN RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|227342322|gb|ACP26540.1| crossover junction endodeoxyribonuclease RuvC [Sinorhizobium fredii
           NGR234]
          Length = 170

 Score =  209 bits (532), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 107/167 (64%), Positives = 137/167 (82%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M+ +IRIIGIDPGLRRTGWGI++  G++L FV+SGT+ S     LA RLCQL++GL +V+
Sbjct: 1   MQTTIRIIGIDPGLRRTGWGIIETLGNSLRFVASGTVTSDGEMDLASRLCQLHDGLAEVV 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             ++P EAAVEQ FVNKDA ATLKLGQAR IA+L PA A + V+EYAPN +KKAVIGVGH
Sbjct: 61  HGYQPHEAAVEQTFVNKDATATLKLGQARGIAMLVPARAGLRVAEYAPNAVKKAVIGVGH 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
           G+K+QIHMMLK+LMP++ FKG DAADALAIA+CHA++  +   ++A+
Sbjct: 121 GEKQQIHMMLKVLMPKAEFKGNDAADALAIAICHAHNRQAVTSRLAA 167


>gi|256160419|ref|ZP_05458108.1| Holliday junction resolvase [Brucella ceti M490/95/1]
 gi|256255625|ref|ZP_05461161.1| Holliday junction resolvase [Brucella ceti B1/94]
 gi|261222828|ref|ZP_05937109.1| crossover junction endodeoxyribonuclease ruvC [Brucella ceti B1/94]
 gi|265998787|ref|ZP_06111344.1| crossover junction endodeoxyribonuclease ruvC [Brucella ceti
           M490/95/1]
 gi|260921412|gb|EEX88065.1| crossover junction endodeoxyribonuclease ruvC [Brucella ceti B1/94]
 gi|262553476|gb|EEZ09245.1| crossover junction endodeoxyribonuclease ruvC [Brucella ceti
           M490/95/1]
          Length = 173

 Score =  209 bits (531), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 105/160 (65%), Positives = 130/160 (81%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M+++IRIIGIDPGLR+TGWGIV+  G++L F+ SGT+ S     LA RLCQL+EGL+ V+
Sbjct: 1   MKETIRIIGIDPGLRQTGWGIVESLGNSLHFIGSGTVTSNAEMDLASRLCQLHEGLSKVL 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             + P EAAVE  FVNKDA ATLKLGQAR IA+L+PA A +PV+EYAPN +KKAVIGVGH
Sbjct: 61  HEFMPHEAAVEHTFVNKDATATLKLGQARGIALLAPAQAGLPVAEYAPNAVKKAVIGVGH 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           G+K+QIHMM+K+LMP + F   DAADALAIA+CHA+H  S
Sbjct: 121 GEKQQIHMMVKVLMPRASFDTSDAADALAIAICHAHHRQS 160


>gi|218513496|ref|ZP_03510336.1| Holliday junction resolvase [Rhizobium etli 8C-3]
          Length = 145

 Score =  209 bits (531), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 99/145 (68%), Positives = 120/145 (82%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M+ +IRI+GIDPGLRRTGWGI+D  G++L FV+SGT+ S     LA RLCQL++GL +V+
Sbjct: 1   MQNTIRIVGIDPGLRRTGWGIIDTLGNSLRFVASGTVTSDGDMDLASRLCQLHDGLAEVV 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             ++P+EAAVEQ FVNKDAVATLKLGQAR IA+L PA A + VSEYAPN +KKAVIGVGH
Sbjct: 61  HAYKPDEAAVEQTFVNKDAVATLKLGQARGIAMLVPARAGLHVSEYAPNAVKKAVIGVGH 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAA 145
           G+K QIHMMLK+LMP+  FKG DAA
Sbjct: 121 GEKHQIHMMLKILMPKVEFKGDDAA 145


>gi|254694365|ref|ZP_05156193.1| Holliday junction resolvase [Brucella abortus bv. 3 str. Tulya]
 gi|261214675|ref|ZP_05928956.1| crossover junction endodeoxyribonuclease ruvC [Brucella abortus bv.
           3 str. Tulya]
 gi|260916282|gb|EEX83143.1| crossover junction endodeoxyribonuclease ruvC [Brucella abortus bv.
           3 str. Tulya]
          Length = 173

 Score =  208 bits (530), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 105/160 (65%), Positives = 129/160 (80%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M+++IRIIGIDPGLRRTGWGIV+  G++L F+ SG + S     LA RLCQL+EGL+ V+
Sbjct: 1   MKETIRIIGIDPGLRRTGWGIVESLGNSLHFIGSGAVTSNAEMDLASRLCQLHEGLSKVL 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             + P EAAVE  FVNKDA ATLKLGQAR IA+L+PA A +PV+EYAPN +KKAVIGVGH
Sbjct: 61  HEFMPHEAAVEHTFVNKDATATLKLGQARGIALLAPAQAGLPVAEYAPNAVKKAVIGVGH 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           G+K+QIHMM+K+LMP + F   DAADALAIA+CHA+H  S
Sbjct: 121 GEKQQIHMMVKVLMPRASFDTSDAADALAIAICHAHHRQS 160


>gi|15966504|ref|NP_386857.1| Holliday junction resolvase [Sinorhizobium meliloti 1021]
 gi|307300459|ref|ZP_07580239.1| crossover junction endodeoxyribonuclease RuvC [Sinorhizobium
           meliloti BL225C]
 gi|307318324|ref|ZP_07597759.1| crossover junction endodeoxyribonuclease RuvC [Sinorhizobium
           meliloti AK83]
 gi|20978749|sp|Q92M90|RUVC_RHIME RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|15075775|emb|CAC47330.1| Probable holliday junction endodeoxyribonuclease [Sinorhizobium
           meliloti 1021]
 gi|306896006|gb|EFN26757.1| crossover junction endodeoxyribonuclease RuvC [Sinorhizobium
           meliloti AK83]
 gi|306904625|gb|EFN35209.1| crossover junction endodeoxyribonuclease RuvC [Sinorhizobium
           meliloti BL225C]
          Length = 170

 Score =  208 bits (529), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 106/167 (63%), Positives = 137/167 (82%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M+ +IRIIGIDPGLRRTGWG+++  G++L FV+SGT+ S     LA RLCQL++GL +V+
Sbjct: 1   MQNTIRIIGIDPGLRRTGWGVIETLGNSLRFVASGTVTSDGELDLASRLCQLHDGLAEVV 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             ++P EAAVEQ FVNKDA ATLKLGQAR IA+L PA A + V+EYAPN +KKAVIGVGH
Sbjct: 61  HGYQPHEAAVEQTFVNKDATATLKLGQARGIAMLVPARAGLRVAEYAPNAVKKAVIGVGH 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
           G+K+QIHMMLK+LMP++ FKG DAADALAIA+CHA++  +   ++A+
Sbjct: 121 GEKQQIHMMLKVLMPKAEFKGNDAADALAIAICHAHNRQAVTSRLAA 167


>gi|319406255|emb|CBI79892.1| Holliday junction nuclease ruvC [Bartonella sp. AR 15-3]
          Length = 169

 Score =  208 bits (529), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 104/165 (63%), Positives = 133/165 (80%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M ++IRIIGIDPGLRRTGWG++D+ G++L FV+SGT+ S  +  LA RLCQ+YEGL+ VI
Sbjct: 1   MVETIRIIGIDPGLRRTGWGVIDLCGNHLNFVASGTLHSNAQNDLASRLCQIYEGLSKVI 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             + P EAAVE VFVNKDA ATLKLGQARAIA+L PA   + +SEYAPN +KK+VIGVGH
Sbjct: 61  HQFMPHEAAVEHVFVNKDAAATLKLGQARAIALLVPAQEGLSISEYAPNKVKKSVIGVGH 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
           G+K+QIHMM+K+L+P + F   DAADALA+A+CH+ H  S  Y++
Sbjct: 121 GEKEQIHMMVKILLPRAEFDSSDAADALALAICHSAHRTSSSYRL 165


>gi|23502562|ref|NP_698689.1| Holliday junction resolvase [Brucella suis 1330]
 gi|38258597|sp|Q8FZ01|RUVC_BRUSU RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|23348563|gb|AAN30604.1| crossover junction endodeoxyribonuclease RuvC [Brucella suis 1330]
          Length = 173

 Score =  207 bits (528), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 105/160 (65%), Positives = 129/160 (80%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M+++IRIIGIDPGL RTGWGIV+  G++L F+ SGT+ S     LA RLCQL+EGL+ V+
Sbjct: 1   MKETIRIIGIDPGLLRTGWGIVESLGNSLHFIGSGTVTSNAEMDLASRLCQLHEGLSKVL 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             + P EAAVE  FVNKDA ATLKLGQAR IA+L+PA A +PV+EYAPN +KKAVIGVGH
Sbjct: 61  HEFMPHEAAVEHTFVNKDATATLKLGQARGIALLAPAQAGLPVAEYAPNAVKKAVIGVGH 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           G+K+QIHMM+K+LMP + F   DAADALAIA+CHA+H  S
Sbjct: 121 GEKQQIHMMVKVLMPRASFDTSDAADALAIAICHAHHRQS 160


>gi|90418965|ref|ZP_01226876.1| crossover junction endodeoxyribonuclease ruvC [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90337045|gb|EAS50750.1| crossover junction endodeoxyribonuclease ruvC [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 172

 Score =  207 bits (527), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 109/158 (68%), Positives = 134/158 (84%)

Query: 3   KSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
           ++IRIIGIDPGLRRTGWGIV+  G++L FV+SGT++S  +  LA RL  LYEGLTDVI  
Sbjct: 5   RTIRIIGIDPGLRRTGWGIVETLGNSLRFVASGTVMSDGKMDLASRLRTLYEGLTDVIHA 64

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
            +P+EAAVEQ FVNKDAVATLKLGQAR IA++ P+LA +PV+EYAPN +KKAVIGVGHG+
Sbjct: 65  QQPDEAAVEQTFVNKDAVATLKLGQARGIAMVVPSLAGLPVAEYAPNAVKKAVIGVGHGE 124

Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           KKQIHMM+K+LMP++ F   DAADALAIA+CH++H  S
Sbjct: 125 KKQIHMMVKVLMPKATFDTDDAADALAIAICHSHHRQS 162


>gi|319899374|ref|YP_004159471.1| Holliday junction nuclease ruvC [Bartonella clarridgeiae 73]
 gi|319403342|emb|CBI76901.1| Holliday junction nuclease ruvC [Bartonella clarridgeiae 73]
          Length = 169

 Score =  207 bits (527), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 103/165 (62%), Positives = 134/165 (81%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M ++IRIIGIDPGLR TGWG++D+ G++L FV++GT+ S  + +LA RLCQLYEGL+ V+
Sbjct: 1   MVETIRIIGIDPGLRHTGWGVIDLCGNHLHFVAAGTLHSKPQNNLASRLCQLYEGLSKVV 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             + P EAAVE VFVNKDA ATLKLGQARAIA+L PA   +P+SEYAPN +KK+VIGVGH
Sbjct: 61  HEFMPHEAAVEHVFVNKDAAATLKLGQARAIALLVPAQKGLPISEYAPNKVKKSVIGVGH 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
           G+K+QIHMM+K+L+P + F   DAADALA+A+CH+ H  S  Y++
Sbjct: 121 GEKEQIHMMVKILLPRAEFDSSDAADALALAICHSTHRTSTSYRL 165


>gi|304393334|ref|ZP_07375262.1| crossover junction endodeoxyribonuclease RuvC [Ahrensia sp. R2A130]
 gi|303294341|gb|EFL88713.1| crossover junction endodeoxyribonuclease RuvC [Ahrensia sp. R2A130]
          Length = 169

 Score =  206 bits (524), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 95/157 (60%), Positives = 125/157 (79%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M  ++RI+GIDPGLR TGWG+V+  G  L F+++GT+ S  +  LA RL +L++GL DV+
Sbjct: 1   MNHTVRILGIDPGLRFTGWGVVESEGSRLRFIAAGTVKSNAKADLATRLRELHDGLQDVL 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
           +   P+EAAVE  FVNKDA ATLKLGQAR IA++ PALA +PV+EYAPN +KKAVIGVGH
Sbjct: 61  RAQSPDEAAVENTFVNKDATATLKLGQARGIAMVVPALAGLPVAEYAPNAVKKAVIGVGH 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYH 157
           GDKKQI +M+ ML+P++ +  +DAAD LAIA+CHA+H
Sbjct: 121 GDKKQIALMVGMLLPKAVWDTEDAADGLAIAICHAHH 157


>gi|49474678|ref|YP_032720.1| Holliday junction resolvase [Bartonella quintana str. Toulouse]
 gi|81646801|sp|Q6FYP4|RUVC_BARQU RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|49240182|emb|CAF26648.1| Holliday junction nuclease ruvC [Bartonella quintana str. Toulouse]
          Length = 169

 Score =  206 bits (524), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 104/163 (63%), Positives = 132/163 (80%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M ++IRIIGIDPGLRRTGWG++D +G+ L FV++GT+ S  R  LA RLCQLY+GL+D++
Sbjct: 1   MAETIRIIGIDPGLRRTGWGVIDFSGNRLQFVAAGTLSSDARCDLASRLCQLYKGLSDIL 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             + P EAAVE VFVNKDA ATLKLGQARAIA+L+PA A +PV EYAPN +KK+VIGVGH
Sbjct: 61  HQFMPHEAAVEHVFVNKDATATLKLGQARAIALLAPAQANLPVFEYAPNKVKKSVIGVGH 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYY 163
           G K+QIHMM+K+L+P + F   DAADALA+A+CH+ H  S  +
Sbjct: 121 GAKEQIHMMVKVLLPRAEFDSSDAADALALALCHSTHRTSASH 163


>gi|319404768|emb|CBI78369.1| Holliday junction nuclease ruvC [Bartonella rochalimae ATCC
           BAA-1498]
          Length = 169

 Score =  204 bits (520), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 105/168 (62%), Positives = 133/168 (79%), Gaps = 1/168 (0%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M  +IRIIGIDPGLRRTGWG++D+ G++L FV+SGT+ S  +  LA RLC+LYEGL+ V+
Sbjct: 1   MVDTIRIIGIDPGLRRTGWGVIDLCGNHLHFVASGTLHSNAQNDLASRLCELYEGLSKVV 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             + P EAAVE VFVNK+A  TLKLGQARAIA+L PA   +P+SEYAPN +KK+VIGVGH
Sbjct: 61  HQFMPHEAAVEHVFVNKNAATTLKLGQARAIALLVPAQEGLPISEYAPNKVKKSVIGVGH 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCH-AYHANSGYYKIAS 167
           G+K+QIHMM+K+L+P + F   DAADALA+A+CH A+H N  Y   AS
Sbjct: 121 GEKEQIHMMVKILLPRAEFDSSDAADALALAICHSAHHTNPSYRLKAS 168


>gi|150397837|ref|YP_001328304.1| Holliday junction resolvase [Sinorhizobium medicae WSM419]
 gi|187611451|sp|A6UCT9|RUVC_SINMW RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|150029352|gb|ABR61469.1| crossover junction endodeoxyribonuclease RuvC [Sinorhizobium
           medicae WSM419]
          Length = 167

 Score =  204 bits (519), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 105/163 (64%), Positives = 135/163 (82%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           IRIIG+DPGLRRTGWGI++  G++L F++SGTI S     LA RLCQL++GL +V+ +++
Sbjct: 2   IRIIGVDPGLRRTGWGIIETLGNSLRFIASGTITSDGDMDLASRLCQLHDGLAEVVHSYQ 61

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P EAAVEQ FVNKDA ATLKLGQAR IA+L PA A + V+EYAPN +KKAVIGVGHG+K+
Sbjct: 62  PHEAAVEQTFVNKDATATLKLGQARGIAMLVPARAGLRVAEYAPNAVKKAVIGVGHGEKQ 121

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
           QIHMMLK+LMP++ FKG DAADALAIA+CHA++  +   ++A+
Sbjct: 122 QIHMMLKVLMPKAEFKGNDAADALAIAICHAHNRQAITSRLAA 164


>gi|319409330|emb|CBI82974.1| Holliday junction nuclease ruvC [Bartonella schoenbuchensis R1]
          Length = 167

 Score =  204 bits (519), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 106/163 (65%), Positives = 132/163 (80%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M K+IRIIGIDPGL+RTGWG+VD+ G++L F++SGT+ S  +  LA RL QL++GL+DV+
Sbjct: 1   MVKAIRIIGIDPGLQRTGWGVVDLLGNHLHFIASGTLRSDAKSHLASRLYQLHQGLSDVV 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             + P EAAVE VFVNKDA ATLKLGQARAIA+L PA A +PVSEYAPNTIKK+VIGVGH
Sbjct: 61  HRFMPHEAAVENVFVNKDATATLKLGQARAIALLVPAQAGLPVSEYAPNTIKKSVIGVGH 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYY 163
           G K+QIHMM+K L+P + F   DAADALA+A+CH+ H  +  Y
Sbjct: 121 GAKEQIHMMVKTLLPRAEFDSSDAADALALALCHSTHRTNLSY 163


>gi|240851226|ref|YP_002972629.1| Holliday junction resolvase ruvC [Bartonella grahamii as4aup]
 gi|240268349|gb|ACS51937.1| Holliday junction resolvase ruvC [Bartonella grahamii as4aup]
          Length = 171

 Score =  204 bits (518), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 103/160 (64%), Positives = 132/160 (82%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M ++IRIIGIDPGLRRTGWG++DVAG+ L F+++GT+ S V+  LA RLCQ+++GL++V+
Sbjct: 1   MAETIRIIGIDPGLRRTGWGVIDVAGNRLQFIAAGTVSSDVKCELASRLCQIHKGLSEVV 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             + P EAAVE VFVNKDA ATLKLGQARAIA+L PA A +PV EYAPN +KK+VIGVGH
Sbjct: 61  HQFMPHEAAVEHVFVNKDATATLKLGQARAIALLVPAQANLPVFEYAPNKVKKSVIGVGH 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           G K+QIHMM+K+L+P + F   DAADALA+A+CH+ H  S
Sbjct: 121 GAKEQIHMMIKVLLPRAEFDSSDAADALALALCHSMHRKS 160


>gi|163869138|ref|YP_001610377.1| Holliday junction resolvase [Bartonella tribocorum CIP 105476]
 gi|161018824|emb|CAK02382.1| Holliday junction nuclease ruvC [Bartonella tribocorum CIP 105476]
          Length = 177

 Score =  198 bits (503), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 101/157 (64%), Positives = 129/157 (82%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M ++IRIIGIDPGLR TGWG++D+AG+ L FV++GT+ S V+  LA RLCQ+++GL++V+
Sbjct: 7   MAETIRIIGIDPGLRYTGWGVIDLAGNRLQFVAAGTVSSDVQCDLASRLCQIHKGLSEVV 66

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             + P EAAVE VFVNKDA ATLKLGQARAIA+L PA A  PV EYAPN +KK+VIGVGH
Sbjct: 67  HQFMPHEAAVEHVFVNKDATATLKLGQARAIALLVPAQANCPVFEYAPNKVKKSVIGVGH 126

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYH 157
           G K+QIHMM+K+L+P + F   DAADALA+A+CH+ H
Sbjct: 127 GAKEQIHMMVKVLLPRAEFDSNDAADALALALCHSMH 163


>gi|187611418|sp|A9IYK9|RUVC_BART1 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
          Length = 171

 Score =  197 bits (502), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 101/157 (64%), Positives = 129/157 (82%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M ++IRIIGIDPGLR TGWG++D+AG+ L FV++GT+ S V+  LA RLCQ+++GL++V+
Sbjct: 1   MAETIRIIGIDPGLRYTGWGVIDLAGNRLQFVAAGTVSSDVQCDLASRLCQIHKGLSEVV 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             + P EAAVE VFVNKDA ATLKLGQARAIA+L PA A  PV EYAPN +KK+VIGVGH
Sbjct: 61  HQFMPHEAAVEHVFVNKDATATLKLGQARAIALLVPAQANCPVFEYAPNKVKKSVIGVGH 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYH 157
           G K+QIHMM+K+L+P + F   DAADALA+A+CH+ H
Sbjct: 121 GAKEQIHMMVKVLLPRAEFDSNDAADALALALCHSMH 157


>gi|110635508|ref|YP_675716.1| Holliday junction resolvase [Mesorhizobium sp. BNC1]
 gi|123161736|sp|Q11DH4|RUVC_MESSB RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|110286492|gb|ABG64551.1| Holliday junction endonuclease RuvC [Chelativorans sp. BNC1]
          Length = 171

 Score =  193 bits (490), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 100/166 (60%), Positives = 133/166 (80%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M  +IRIIGIDPGLRRTGW +++  G++L F+ +GT+ S  +  LA RLCQL++GL +++
Sbjct: 1   MTGTIRIIGIDPGLRRTGWAVIETVGNSLRFIGAGTVRSNDKADLASRLCQLHDGLAEIL 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
               P+EAAVE  FVNKDAVATLKLGQAR IA+L PA A + V+EYAPN +KKAVIGVGH
Sbjct: 61  HLHMPQEAAVEATFVNKDAVATLKLGQARGIAMLVPARAGLRVAEYAPNAVKKAVIGVGH 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
           G+K+QIHMM+K+LMP++ F G DAADA+A+A+CHA+H  S  +++A
Sbjct: 121 GEKRQIHMMVKVLMPKALFDGDDAADAIAVAICHAHHRQSPAWRLA 166


>gi|254504745|ref|ZP_05116896.1| crossover junction endodeoxyribonuclease RuvC [Labrenzia alexandrii
           DFL-11]
 gi|222440816|gb|EEE47495.1| crossover junction endodeoxyribonuclease RuvC [Labrenzia alexandrii
           DFL-11]
          Length = 171

 Score =  189 bits (479), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 94/157 (59%), Positives = 123/157 (78%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M  +IR++GIDPGLRRTGWG+++ AG+ L F++SGT+ S  ++SLA RL +L++GLT V+
Sbjct: 1   MTHAIRLLGIDPGLRRTGWGMIEAAGNRLSFIASGTVTSDNKKSLAERLVELHDGLTAVV 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
           +   P EAAVE  FVNKDA ATLKLGQAR +A+L P+LA + V+EYAPN +KK V+G GH
Sbjct: 61  RQHNPAEAAVEHTFVNKDAGATLKLGQARGVALLVPSLAGLSVAEYAPNLVKKTVVGTGH 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYH 157
            +K+QI  M+K+LMP + F   DAADALAIAVCHA H
Sbjct: 121 AEKEQIRAMVKVLMPRATFNSDDAADALAIAVCHAQH 157


>gi|118588335|ref|ZP_01545744.1| Holliday junction resolvase [Stappia aggregata IAM 12614]
 gi|118439041|gb|EAV45673.1| Holliday junction resolvase [Stappia aggregata IAM 12614]
          Length = 234

 Score =  189 bits (479), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 94/167 (56%), Positives = 130/167 (77%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M  +IR++GIDPGLRRTGWG+++  G+ L F++SGT+ S  ++SLA RL +L++GL++V+
Sbjct: 64  MTHAIRLLGIDPGLRRTGWGMIEATGNRLSFIASGTVTSDNKKSLAERLVELHDGLSEVV 123

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
           +   P EAAVE  FVNKDA ATLKLGQAR IA+L P+LA +PV+EYAPN +KK V+G GH
Sbjct: 124 RRHDPAEAAVEHTFVNKDAGATLKLGQARGIALLVPSLAGLPVAEYAPNLVKKTVVGTGH 183

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
            +K+QI  M+K+LMP + F   DAADALAIA+CHA H ++   ++A+
Sbjct: 184 AEKEQIRAMVKILMPRATFNSDDAADALAIAICHAQHRSNSTARLAA 230


>gi|328542536|ref|YP_004302645.1| Crossover junction endodeoxyribonuclease ruvC [polymorphum gilvum
           SL003B-26A1]
 gi|326412282|gb|ADZ69345.1| Crossover junction endodeoxyribonuclease ruvC [Polymorphum gilvum
           SL003B-26A1]
          Length = 171

 Score =  183 bits (464), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 95/167 (56%), Positives = 124/167 (74%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M   IRI+GIDPGLRRTGWG+++  G+ L F+ +GT+ S  ++ LA RL QL++GL+ ++
Sbjct: 1   MMHPIRILGIDPGLRRTGWGLIEALGNRLTFLGAGTVTSDDKRGLAERLVQLHDGLSAIV 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
               P EAAVE  FVNKDA ATLKLGQAR IA+L PALA +PV+EYAPN +KK V+G GH
Sbjct: 61  AREEPAEAAVEHTFVNKDAGATLKLGQARGIALLVPALAGLPVAEYAPNLVKKTVVGTGH 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
            +K+QI  M+K+LMP + F   DAADALAIA+CHA+H  S   ++A 
Sbjct: 121 AEKEQIRAMVKILMPRARFDTDDAADALAIAICHAHHRGSAQARLAE 167


>gi|114771194|ref|ZP_01448614.1| Holliday junction resolvase [alpha proteobacterium HTCC2255]
 gi|114548119|gb|EAU51006.1| Holliday junction resolvase [alpha proteobacterium HTCC2255]
          Length = 170

 Score =  182 bits (461), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 88/155 (56%), Positives = 111/155 (71%), Gaps = 1/155 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPGLR  GWG+VDV G  +  ++ G   S    +LA RL +L+  LTDVIK ++
Sbjct: 1   MRVLGIDPGLRNLGWGVVDVLGPKITHIADGVCKSST-GTLAERLLELHNQLTDVIKKYK 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P  +AVE+ FVNKD   TLKLGQAR I +L+PA A + VSEYAPNTIKK V+GVGH DKK
Sbjct: 60  PTTSAVEKTFVNKDGAGTLKLGQARGICLLAPAQAGLDVSEYAPNTIKKVVVGVGHADKK 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHAN 159
           Q+  M++M  P   F G DA DALAIA+CHA+HA 
Sbjct: 120 QVEHMVQMQFPGMSFVGPDAVDALAIALCHAHHAQ 154


>gi|254473255|ref|ZP_05086653.1| crossover junction endodeoxyribonuclease RuvC [Pseudovibrio sp.
           JE062]
 gi|211957976|gb|EEA93178.1| crossover junction endodeoxyribonuclease RuvC [Pseudovibrio sp.
           JE062]
          Length = 166

 Score =  181 bits (458), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 94/162 (58%), Positives = 123/162 (75%)

Query: 8   IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEE 67
           +G+DPGLR TGWGI+D  G+ + F++SGTI S  + SLA RL QLY GL +VI+ + P E
Sbjct: 1   MGVDPGLRNTGWGIIDAKGNRVSFIASGTIQSNNKYSLAERLKQLYTGLQEVIERYGPAE 60

Query: 68  AAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIH 127
           AAVE  FVNKDA ATLKLGQAR IA+L P+L  + VSEYAPN +KK V+G GH +K+QI 
Sbjct: 61  AAVENTFVNKDAGATLKLGQARGIALLVPSLHNLVVSEYAPNLVKKTVVGTGHAEKEQIR 120

Query: 128 MMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQD 169
           MM+K+LMP++ F   DAADALAIA+CH++H  S   ++A+ +
Sbjct: 121 MMVKVLMPKATFNSDDAADALAIAICHSHHRGSVTGRLAAAE 162


>gi|77464126|ref|YP_353630.1| Holliday junction resolvase [Rhodobacter sphaeroides 2.4.1]
 gi|221639993|ref|YP_002526255.1| Holliday junction resolvase [Rhodobacter sphaeroides KD131]
 gi|332559002|ref|ZP_08413324.1| Holliday junction resolvase [Rhodobacter sphaeroides WS8N]
 gi|110282925|sp|Q3J0F5|RUVC_RHOS4 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|254767483|sp|B9KKV7|RUVC_RHOSK RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|77388544|gb|ABA79729.1| Holliday junction endonuclease RuvC [Rhodobacter sphaeroides 2.4.1]
 gi|221160774|gb|ACM01754.1| Crossover junction endodeoxyribonuclease ruvC [Rhodobacter
           sphaeroides KD131]
 gi|332276714|gb|EGJ22029.1| Holliday junction resolvase [Rhodobacter sphaeroides WS8N]
          Length = 168

 Score =  177 bits (448), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 85/156 (54%), Positives = 110/156 (70%), Gaps = 1/156 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPGLR  GWG++DV+G  L  V++G I       LA RL  L+  LTDV+  ++
Sbjct: 1   MRVLGIDPGLRNMGWGVIDVSGTRLAHVANG-ICHSDSGDLAHRLLSLHGQLTDVLARFQ 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ AAVE  FVNKD VATLKLGQAR IA+L PA A + V EYAPN +KK V+GVGH  K+
Sbjct: 60  PDTAAVEHTFVNKDGVATLKLGQARGIALLVPAQAGLAVGEYAPNAVKKTVVGVGHAAKE 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           QI  M+++ +P     G DAADALA+A+CHA+H  S
Sbjct: 120 QIQHMVRLHLPGVHLAGPDAADALAVAICHAHHVQS 155


>gi|255262910|ref|ZP_05342252.1| crossover junction endodeoxyribonuclease RuvC [Thalassiobium sp.
           R2A62]
 gi|255105245|gb|EET47919.1| crossover junction endodeoxyribonuclease RuvC [Thalassiobium sp.
           R2A62]
          Length = 200

 Score =  176 bits (447), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 85/156 (54%), Positives = 109/156 (69%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPGLR  GWG++DV+G  L  V++G   S     LA RL  L+  L +VI+ + 
Sbjct: 32  MRVLGIDPGLRNMGWGVIDVSGTRLSHVANGICKSSTGDILAERLLLLHGQLAEVIEQYA 91

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           PE AAVEQ FVNKD   TLKLGQAR IA+L  A A + V EYAPN +KK V+GVGH DK+
Sbjct: 92  PETAAVEQTFVNKDGAGTLKLGQARGIAMLVAAQAGLSVGEYAPNAVKKTVVGVGHADKR 151

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           Q+  M++M +P     G D+ADALAIA+CHA+HA S
Sbjct: 152 QVDHMVRMQLPGVQIVGPDSADALAIAICHAHHAQS 187


>gi|300023945|ref|YP_003756556.1| crossover junction endodeoxyribonuclease RuvC [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299525766|gb|ADJ24235.1| crossover junction endodeoxyribonuclease RuvC [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 175

 Score =  176 bits (446), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 82/158 (51%), Positives = 112/158 (70%)

Query: 3   KSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
           ++IRIIG DPGLRRTGWGIV+  G  L +V+SG I       LA+RL  L++ +T VI++
Sbjct: 4   RAIRIIGFDPGLRRTGWGIVESDGVRLVYVASGVITPPKDDDLAYRLSALFDAVTSVIQS 63

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
           + P EAAVE+ FVN++  +TLKLGQAR   +L+PA   + V+EY PN IKK+V G GH +
Sbjct: 64  FSPSEAAVEETFVNENPRSTLKLGQARGAILLAPARLGLRVAEYTPNLIKKSVTGTGHAE 123

Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           K+QI  M+  L+P++ F   D ADALAIA+ HA+H +S
Sbjct: 124 KQQIQAMISFLLPKATFDSADEADALAIAITHAHHRSS 161


>gi|288957818|ref|YP_003448159.1| crossover junction endodeoxyribonuclease [Azospirillum sp. B510]
 gi|288910126|dbj|BAI71615.1| crossover junction endodeoxyribonuclease [Azospirillum sp. B510]
          Length = 352

 Score =  176 bits (445), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 84/156 (53%), Positives = 116/156 (74%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPGLR TGWGI+DVAG+ L  V+ G + S  R  LA RL QL++ L+ V++ + 
Sbjct: 1   MRLLGIDPGLRHTGWGIIDVAGNRLSHVADGAVHSDDRCPLAERLLQLHDALSAVVERYH 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+EAAVE+ FVN +AV+TLKLGQARA+A+L PA A + V+EYA N +KKAV+G G  +K 
Sbjct: 61  PDEAAVEETFVNSNAVSTLKLGQARAVALLVPAQAGLAVAEYANNMVKKAVVGQGRAEKA 120

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           Q+  M+++L+P       DAADALA+A+CHA+H  S
Sbjct: 121 QVQTMVRLLLPGCGIGTPDAADALAVAICHAHHRAS 156


>gi|126462969|ref|YP_001044083.1| Holliday junction resolvase [Rhodobacter sphaeroides ATCC 17029]
 gi|166233290|sp|A3PLU5|RUVC_RHOS1 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|126104633|gb|ABN77311.1| crossover junction endodeoxyribonuclease RuvC [Rhodobacter
           sphaeroides ATCC 17029]
          Length = 168

 Score =  175 bits (444), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 85/156 (54%), Positives = 110/156 (70%), Gaps = 1/156 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPGLR  GWG++DV+G  L  V++G I       LA RL  L+  LTDV+  ++
Sbjct: 1   MRVLGIDPGLRNMGWGVIDVSGTRLAHVANG-ICHSDSGDLAQRLLSLHGQLTDVLARFQ 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ AAVE  FVNKD VATLKLGQAR IA+L PA A + V EYAPN +KK V+GVGH  K+
Sbjct: 60  PDTAAVEHTFVNKDGVATLKLGQARGIALLVPAQAGLAVGEYAPNAVKKTVVGVGHAAKE 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           QI  M+++ +P     G DAADALA+A+CHA+H  S
Sbjct: 120 QIQHMVRLHLPGVALAGPDAADALAVAICHAHHVQS 155


>gi|304320106|ref|YP_003853749.1| Holliday junction resolvase [Parvularcula bermudensis HTCC2503]
 gi|303299009|gb|ADM08608.1| Holliday junction resolvase [Parvularcula bermudensis HTCC2503]
          Length = 170

 Score =  174 bits (441), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 86/160 (53%), Positives = 109/160 (68%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M + +RIIGIDPGLR TGWG+++  G  L FV+SG I    +  LA RL +L   L  V+
Sbjct: 1   MERCVRIIGIDPGLRATGWGVIETEGTRLRFVASGFIRPATKTDLAQRLYRLSCELAAVL 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
            + RP+EAAVE+ FVN D  + LKLGQAR I +  PA    PV+EYAPNTIKKAV+GVGH
Sbjct: 61  DSHRPDEAAVEETFVNADPRSALKLGQARGICLAGPAALGCPVAEYAPNTIKKAVVGVGH 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
            DK+Q+  M+  L+P++     D ADALAIA+CHA H  S
Sbjct: 121 ADKRQVAAMVARLLPKAGTPANDEADALAIAICHASHRGS 160


>gi|92118983|ref|YP_578712.1| Holliday junction resolvase [Nitrobacter hamburgensis X14]
 gi|91801877|gb|ABE64252.1| Holliday junction endonuclease RuvC [Nitrobacter hamburgensis X14]
          Length = 178

 Score =  174 bits (441), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 90/161 (55%), Positives = 121/161 (75%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           IRI+GIDPGLRRTGWG++D+ G+ L FV  G++ +  + +LA RL  ++EGL  V+  +R
Sbjct: 14  IRILGIDPGLRRTGWGVLDIEGNRLMFVGCGSVETREQMALASRLLAIHEGLGRVLDEFR 73

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P EAA+EQ FVNKD VATLKLGQAR +A+L+PA+  I V+EYAPN +KK V+G GH DK 
Sbjct: 74  PAEAAIEQTFVNKDGVATLKLGQARGVAMLAPAMFGIVVAEYAPNQVKKTVVGAGHADKT 133

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
           QI  MLK+L+P++  K  DAADALAIA+ HA+H  +   ++
Sbjct: 134 QIQAMLKILLPKADPKSADAADALAIAITHAHHRGAAALRM 174


>gi|187611518|sp|Q1QHP5|RUVC_NITHX RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
          Length = 170

 Score =  174 bits (441), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 90/161 (55%), Positives = 121/161 (75%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           IRI+GIDPGLRRTGWG++D+ G+ L FV  G++ +  + +LA RL  ++EGL  V+  +R
Sbjct: 6   IRILGIDPGLRRTGWGVLDIEGNRLMFVGCGSVETREQMALASRLLAIHEGLGRVLDEFR 65

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P EAA+EQ FVNKD VATLKLGQAR +A+L+PA+  I V+EYAPN +KK V+G GH DK 
Sbjct: 66  PAEAAIEQTFVNKDGVATLKLGQARGVAMLAPAMFGIVVAEYAPNQVKKTVVGAGHADKT 125

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
           QI  MLK+L+P++  K  DAADALAIA+ HA+H  +   ++
Sbjct: 126 QIQAMLKILLPKADPKSADAADALAIAITHAHHRGAAALRM 166


>gi|209886414|ref|YP_002290271.1| crossover junction endodeoxyribonuclease RuvC [Oligotropha
           carboxidovorans OM5]
 gi|226698761|sp|B6JIZ7|RUVC_OLICO RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|209874610|gb|ACI94406.1| crossover junction endodeoxyribonuclease RuvC [Oligotropha
           carboxidovorans OM5]
          Length = 171

 Score =  173 bits (439), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 91/158 (57%), Positives = 117/158 (74%)

Query: 3   KSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
           ++IRI+GIDPGLRRTGWG++DV G+ L FV+ GT+ S     L+ RL  ++EGL  V+  
Sbjct: 4   RTIRILGIDPGLRRTGWGVIDVEGNRLIFVACGTVESRESLPLSERLLAIHEGLVRVVSE 63

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
            RP EAAVEQ FVNKD   TLKLGQAR +A+L PA++ I V+EYAPN +KK V+G GH D
Sbjct: 64  HRPLEAAVEQTFVNKDGAGTLKLGQARGVAMLVPAMSGISVAEYAPNLVKKTVVGAGHAD 123

Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           K QI +MLK+L+P++     DAADALAIA+ HA+H  S
Sbjct: 124 KNQIQVMLKILLPKAAPPTPDAADALAIAITHAHHRQS 161


>gi|90426277|ref|YP_534647.1| Holliday junction resolvase [Rhodopseudomonas palustris BisB18]
 gi|122995258|sp|Q20X08|RUVC_RHOPB RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|90108291|gb|ABD90328.1| Holliday junction endonuclease RuvC [Rhodopseudomonas palustris
           BisB18]
          Length = 175

 Score =  172 bits (435), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 93/165 (56%), Positives = 119/165 (72%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           +R+ IRI+GIDPGLRRTGWG+++  G+ L F+  G++       LA RL +++ GL  V+
Sbjct: 6   IRQPIRILGIDPGLRRTGWGVIESCGNRLVFIGCGSVEPDNDLPLASRLLEIHHGLAKVL 65

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             + P EAAVEQ FVNKDA ATLKLGQAR IA+L+PAL  I V+EYAPN IKK VIG GH
Sbjct: 66  AEFVPAEAAVEQTFVNKDAGATLKLGQARGIAMLAPALVGIAVAEYAPNLIKKTVIGAGH 125

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
            DK QI MMLK+L+P++  K  DAADALAIA+ HA+H      ++
Sbjct: 126 ADKAQIQMMLKILLPKAEPKTADAADALAIAITHAHHRGGALLRL 170


>gi|154252562|ref|YP_001413386.1| crossover junction endodeoxyribonuclease RuvC [Parvibaculum
           lavamentivorans DS-1]
 gi|187611454|sp|A7HUZ6|RUVC_PARL1 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|154156512|gb|ABS63729.1| crossover junction endodeoxyribonuclease RuvC [Parvibaculum
           lavamentivorans DS-1]
          Length = 175

 Score =  171 bits (434), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 86/165 (52%), Positives = 114/165 (69%), Gaps = 1/165 (0%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M  S+  +GIDPGL  TGWG++ ++G  L  +++GTI S  R SLA RL Q+  GL  VI
Sbjct: 1   MPVSLTYLGIDPGLTATGWGVIGISGSRLTHIANGTITSNARLSLAERLVQIEAGLVQVI 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
               P+ AAVEQ FV +DA A LKLGQARAIA+L  A A + V+EYAPN +KK+V+G GH
Sbjct: 61  HEHAPDAAAVEQAFVARDASAALKLGQARAIALLVSARAGLAVAEYAPNHVKKSVVGAGH 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
            DK QI +M++ML+P +    + AADALA+A+CHA H+ S   +I
Sbjct: 121 ADKSQIRLMVEMLLPGAKAGSEHAADALALAICHA-HSGSANERI 164


>gi|75676910|ref|YP_319331.1| Holliday junction resolvase [Nitrobacter winogradskyi Nb-255]
 gi|90146468|sp|Q3SP12|RUVC_NITWN RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|74421780|gb|ABA05979.1| Holliday junction endonuclease RuvC [Nitrobacter winogradskyi
           Nb-255]
          Length = 172

 Score =  171 bits (434), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 90/156 (57%), Positives = 117/156 (75%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           IRI+GIDPGLRRTGWG++++ G+ L FV  G++ +    +LA RL  ++ GL  V+  +R
Sbjct: 6   IRILGIDPGLRRTGWGVLEIDGNRLMFVGCGSVETREHMALASRLLAIHAGLGAVLDQFR 65

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P EAA+EQ FVNKD VATLKLGQAR +A+L+PAL  I V+EYAPN +KK V+G GH DK 
Sbjct: 66  PSEAAIEQTFVNKDGVATLKLGQARGVAMLAPALFGIAVAEYAPNQVKKTVVGAGHADKA 125

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           QI  MLK+L+P++  K  DAADALAIA+ HA+H  S
Sbjct: 126 QIQAMLKILLPKADPKSADAADALAIAITHAHHRKS 161


>gi|296535993|ref|ZP_06898137.1| crossover junction endoribonuclease subunit C [Roseomonas
           cervicalis ATCC 49957]
 gi|296263679|gb|EFH10160.1| crossover junction endoribonuclease subunit C [Roseomonas
           cervicalis ATCC 49957]
          Length = 168

 Score =  171 bits (433), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 75/156 (48%), Positives = 111/156 (71%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++G+DPGL+ TGWG+V+ +G  L  +  G I +    SLA RLCQ++  L  ++  W+
Sbjct: 2   VRLLGLDPGLQHTGWGVVESSGSRLRHLGDGVISTTADLSLAERLCQIHRALNTLLDLWK 61

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+EAAVE  +VNK+  A LKLGQAR + +L+PALA +PV+EY    +K+AV+G GH DK 
Sbjct: 62  PDEAAVEHTYVNKNPGAALKLGQARGVVLLAPALAGLPVAEYQAMEVKRAVVGTGHADKV 121

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           Q+  M++ L+P +  K  DA+DALA+A+CHA+H N+
Sbjct: 122 QVAEMVRRLLPGATLKRADASDALAVAICHAHHRNT 157


>gi|89068048|ref|ZP_01155465.1| Holliday junction resolvase [Oceanicola granulosus HTCC2516]
 gi|89046287|gb|EAR52344.1| Holliday junction resolvase [Oceanicola granulosus HTCC2516]
          Length = 169

 Score =  170 bits (431), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 81/159 (50%), Positives = 109/159 (68%), Gaps = 1/159 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R+IGIDPGLR TGWG+++  G  L  V++G +     ++LA RL  L+  L +V +   
Sbjct: 1   MRVIGIDPGLRHTGWGLIESVGSKLRHVANG-VCHSEGETLAARLLSLHLQLAEVFRQHA 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           PE AAVEQ FVN+D   TLKLGQAR IA+L PA A + V EYAPN +KK+V+GVGH DK 
Sbjct: 60  PEAAAVEQTFVNRDGAGTLKLGQARGIAMLVPAQAGLEVGEYAPNAVKKSVVGVGHADKS 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYY 163
           Q+  M+++ +P     G DAADALA+A+CH +H  SG +
Sbjct: 120 QVAHMVRVHLPGVALAGPDAADALAVAICHVHHLQSGRH 158


>gi|27376646|ref|NP_768175.1| Holliday junction resolvase [Bradyrhizobium japonicum USDA 110]
 gi|44888481|sp|Q89U82|RUVC_BRAJA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|27349787|dbj|BAC46800.1| ruvC [Bradyrhizobium japonicum USDA 110]
          Length = 175

 Score =  170 bits (431), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 89/165 (53%), Positives = 121/165 (73%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           +R  +RIIGIDPGLRRTGWG+++  G+ L +V+ G++       L+ RL  ++EGL  V+
Sbjct: 6   IRGPVRIIGIDPGLRRTGWGVIEAEGNRLIYVACGSVEPPDDLPLSSRLLAIHEGLASVL 65

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
            + +P EAAVEQ FVNKD VATLKLGQAR +A+L+PA+  I V+EYAPN +KK V+G GH
Sbjct: 66  SDHKPMEAAVEQTFVNKDGVATLKLGQARGVAMLAPAMFGISVAEYAPNQVKKTVVGAGH 125

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
            DK+QI MMLK+L+P++     DAADALAIA+ HA+H  S   ++
Sbjct: 126 ADKQQIAMMLKILLPKAEPPSADAADALAIAITHAHHRQSTALRL 170


>gi|260576657|ref|ZP_05844644.1| crossover junction endodeoxyribonuclease RuvC [Rhodobacter sp. SW2]
 gi|259021142|gb|EEW24451.1| crossover junction endodeoxyribonuclease RuvC [Rhodobacter sp. SW2]
          Length = 206

 Score =  170 bits (431), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 86/165 (52%), Positives = 115/165 (69%), Gaps = 2/165 (1%)

Query: 3   KSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
           +++R++GIDPGLR  GWG++DV G  L  V++G I       LA RL  L+  LT+V++ 
Sbjct: 37  QAVRVLGIDPGLRNLGWGVIDVDGARLTHVANG-ICHSQDGDLAQRLLSLHTQLTEVLRA 95

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
           + P+ AAVE  FVNKDAVATLKLGQAR IA+L PA A + V EYAPN +KK V+GVGH  
Sbjct: 96  FAPDAAAVEHTFVNKDAVATLKLGQARGIALLVPAQAGLTVGEYAPNAVKKTVVGVGHAA 155

Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS-GYYKIA 166
           K Q+  M+++ +P     G DAADALA+A+CHA+H  S G ++ A
Sbjct: 156 KVQVDHMVRIHLPGVQISGPDAADALAVAICHAHHLQSAGRFEAA 200


>gi|119383448|ref|YP_914504.1| crossover junction endodeoxyribonuclease RuvC [Paracoccus
           denitrificans PD1222]
 gi|166233277|sp|A1AZW4|RUVC_PARDP RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|119373215|gb|ABL68808.1| crossover junction endodeoxyribonuclease RuvC [Paracoccus
           denitrificans PD1222]
          Length = 164

 Score =  169 bits (429), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 85/153 (55%), Positives = 107/153 (69%), Gaps = 1/153 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++IIGIDPGLR  GWG++ V G  L  + +G IV      L  RL  LY GL  VI    
Sbjct: 1   MKIIGIDPGLRNMGWGVIAVEGPRLRHLDNG-IVHSEAGDLGPRLAALYRGLCAVIVRHA 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ AAVEQ FVNKDA+ TLKLGQAR IA+L+PA A + + EYAPN +KKAV+GVGH  K+
Sbjct: 60  PDAAAVEQTFVNKDALGTLKLGQARGIALLAPAEAGLEIGEYAPNAVKKAVVGVGHAAKE 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYH 157
           QI  M++ ++P   F G DAADALA+A+CHA+H
Sbjct: 120 QIQHMVRFMLPGVEFAGPDAADALAVAICHAHH 152


>gi|312113734|ref|YP_004011330.1| crossover junction endodeoxyribonuclease RuvC [Rhodomicrobium
           vannielii ATCC 17100]
 gi|311218863|gb|ADP70231.1| crossover junction endodeoxyribonuclease RuvC [Rhodomicrobium
           vannielii ATCC 17100]
          Length = 173

 Score =  169 bits (429), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 80/156 (51%), Positives = 110/156 (70%)

Query: 2   RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           +  +RI+G+DPGL   GWG+VD  G  L FV+ GTI +   +++  RL  L+EGL +V++
Sbjct: 3   KPPVRILGLDPGLCHLGWGVVDWDGQRLTFVACGTIDTGAGEAMGQRLTALFEGLNEVVR 62

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
              P+EAA+E+ FVN +A A LKLGQAR +A+L PA   + V+EYAPN+IKK V G GH 
Sbjct: 63  AHAPDEAAIEETFVNTNARAALKLGQARGVALLVPARLGLSVAEYAPNSIKKTVTGAGHA 122

Query: 122 DKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYH 157
           DK QI  ML+ L+P++     DAADALA+A+CHA+H
Sbjct: 123 DKVQIRTMLRYLLPKAQPATPDAADALAVAICHAHH 158


>gi|85714395|ref|ZP_01045383.1| Holliday junction resolvase [Nitrobacter sp. Nb-311A]
 gi|85698842|gb|EAQ36711.1| Holliday junction resolvase [Nitrobacter sp. Nb-311A]
          Length = 200

 Score =  169 bits (428), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 90/156 (57%), Positives = 115/156 (73%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           IRI+GIDPGLRRTGWG++D  G+ L FV  G++ +     LA RL  ++ GL  V+  +R
Sbjct: 34  IRILGIDPGLRRTGWGVLDTEGNRLVFVGCGSVETREHMELASRLLAIHAGLGAVLDRFR 93

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P EAA+EQ FVNKD VATLKLGQAR +A+L+PA+  I V+EYAPN +KK V+G GH DK 
Sbjct: 94  PAEAAIEQTFVNKDGVATLKLGQARGVAMLAPAMFGIAVAEYAPNQVKKTVVGAGHADKI 153

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           QI  MLK+L+P++  K  DAADALAIA+ HA+H  S
Sbjct: 154 QIQAMLKILLPKADPKSADAADALAIAITHAHHRKS 189


>gi|115526758|ref|YP_783669.1| Holliday junction resolvase [Rhodopseudomonas palustris BisA53]
 gi|122294483|sp|Q07H95|RUVC_RHOP5 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|115520705|gb|ABJ08689.1| Holliday junction endonuclease RuvC [Rhodopseudomonas palustris
           BisA53]
          Length = 174

 Score =  169 bits (427), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 85/156 (54%), Positives = 116/156 (74%)

Query: 2   RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           R+ +RI+GIDPGLRRTGWG+++  G+ L F+  G++       LA RL  ++ GL  V+ 
Sbjct: 7   RQPVRILGIDPGLRRTGWGVIESEGNRLVFIGCGSVEPPDTLPLAERLLAIHRGLAKVLA 66

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
           ++ P+EAAVEQ FVNKDA ATLKLGQAR +A+L+PA+  + V+EYAPN +KK V+G GH 
Sbjct: 67  DFAPDEAAVEQTFVNKDAGATLKLGQARGVAMLAPAMVGLSVAEYAPNLVKKTVVGAGHA 126

Query: 122 DKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYH 157
           DK QI MMLK+L+P++     DAADALA+A+ HA+H
Sbjct: 127 DKNQIQMMLKILLPKAEPPSADAADALAVAITHAHH 162


>gi|91978631|ref|YP_571290.1| Holliday junction resolvase [Rhodopseudomonas palustris BisB5]
 gi|91685087|gb|ABE41389.1| Holliday junction endonuclease RuvC [Rhodopseudomonas palustris
           BisB5]
          Length = 232

 Score =  168 bits (426), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 87/157 (55%), Positives = 116/157 (73%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           +R ++RI+GIDPGLRRTGWG+VD  G+ L FV  G++       LA RL  ++ GL+ V+
Sbjct: 64  IRTAVRILGIDPGLRRTGWGVVDSDGNRLVFVGCGSVEPKNTLPLAERLLAIHHGLSRVL 123

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
            ++ P EAAVEQ FVNKD  ATLKLGQAR +A+L+PA+  + V+EYAPN +KK V+G GH
Sbjct: 124 TDYAPAEAAVEQTFVNKDGAATLKLGQARGVAMLAPAMRGLLVAEYAPNLVKKTVVGAGH 183

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYH 157
            DK QI MMLK+L+P++     DAADALA+A+ HA+H
Sbjct: 184 ADKTQIQMMLKILLPKADPHSADAADALAVAITHAHH 220


>gi|254463445|ref|ZP_05076861.1| crossover junction endodeoxyribonuclease RuvC [Rhodobacterales
           bacterium HTCC2083]
 gi|206680034|gb|EDZ44521.1| crossover junction endodeoxyribonuclease RuvC [Rhodobacteraceae
           bacterium HTCC2083]
          Length = 225

 Score =  168 bits (425), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 80/157 (50%), Positives = 108/157 (68%), Gaps = 1/157 (0%)

Query: 4   SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           S+R++GIDPGLR  GWG+++V G  +  + +G +     + L  RL  L+  LTDV+  +
Sbjct: 57  SMRVLGIDPGLRNMGWGVIEVDGSRMRHLGNG-VCKSEGKDLGLRLLSLHRQLTDVLCEF 115

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +P  AAVEQ FVNKD   TLKLGQAR IA+L PA A + + EYAPN +KK V+GVGH  K
Sbjct: 116 QPTTAAVEQTFVNKDGAGTLKLGQARGIALLVPAQAGLEIGEYAPNKVKKTVVGVGHAAK 175

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           +Q+  M+K+ +P    KG DAADALAIA+CHA++  S
Sbjct: 176 EQVQHMVKLQLPGVVLKGPDAADALAIAMCHAHYTRS 212


>gi|148258117|ref|YP_001242702.1| Holliday junction resolvase [Bradyrhizobium sp. BTAi1]
 gi|166231582|sp|A5ERK2|RUVC_BRASB RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|146410290|gb|ABQ38796.1| Holliday junction endonuclease RuvC [Bradyrhizobium sp. BTAi1]
          Length = 175

 Score =  167 bits (423), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 89/157 (56%), Positives = 118/157 (75%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           +R ++RIIGIDPGLRRTGWG+++  G+ L +V  G++       LA RL  ++EGL  V+
Sbjct: 6   IRAAVRIIGIDPGLRRTGWGVIESEGNRLIYVGCGSVEPPDDLPLANRLLAIHEGLAKVL 65

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
            +++P EAAVEQ FVNKD VATLKLGQAR IA+L+PA+  I V+EYAPN +KK V+G GH
Sbjct: 66  NDFQPLEAAVEQTFVNKDGVATLKLGQARGIAMLAPAMFGISVAEYAPNQVKKTVVGAGH 125

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYH 157
            DK QI +MLK+L+P++     DAADALAIA+ HA+H
Sbjct: 126 ADKGQIAVMLKILLPKAEPPSADAADALAIAITHAHH 162


>gi|86751375|ref|YP_487871.1| Holliday junction resolvase [Rhodopseudomonas palustris HaA2]
 gi|86574403|gb|ABD08960.1| Holliday junction endonuclease RuvC [Rhodopseudomonas palustris
           HaA2]
          Length = 198

 Score =  165 bits (418), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 88/157 (56%), Positives = 117/157 (74%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           +R ++RI+GIDPGLRRTGWG+V+  G+ L FV+ G++      +LA RL  ++ GL  V+
Sbjct: 30  IRTAVRILGIDPGLRRTGWGVVESDGNRLVFVACGSVEPKDTLTLAERLLAIHHGLEKVL 89

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             + P EAAVEQ FVNKD  ATLKLGQAR +A+L+PA+  I V+EYAPN +KK V+G GH
Sbjct: 90  AEFAPAEAAVEQTFVNKDGAATLKLGQARGVAMLAPAMHGILVAEYAPNQVKKTVVGAGH 149

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYH 157
            DK QI MMLK+L+P++  +  DAADALAIA+ HA+H
Sbjct: 150 ADKVQIQMMLKILLPKADPRTADAADALAIAITHAHH 186


>gi|294678732|ref|YP_003579347.1| crossover junction endodeoxyribonuclease RuvC [Rhodobacter
           capsulatus SB 1003]
 gi|294477552|gb|ADE86940.1| crossover junction endodeoxyribonuclease RuvC [Rhodobacter
           capsulatus SB 1003]
          Length = 183

 Score =  164 bits (415), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 91/156 (58%), Positives = 112/156 (71%), Gaps = 1/156 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R+IGIDPGLR  GWG+++V G  L  +++G I+      LA RL  L+ GLT VI   R
Sbjct: 1   MRVIGIDPGLRNLGWGVIEVDGARLRHIANG-IIHSEGTDLAKRLVVLHAGLTAVIATHR 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           PE AAVEQ FVNKDAVATLKLGQAR IA+L PA A + + EYAPN +KKAV+GVGH DK 
Sbjct: 60  PEAAAVEQTFVNKDAVATLKLGQARGIALLVPAQAGLEIGEYAPNAVKKAVVGVGHADKG 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           Q+  M++  +P   F G DAADALAIA+CHA+H  S
Sbjct: 120 QVQHMVRHQLPGVVFDGPDAADALAIAICHAHHLQS 155


>gi|254487410|ref|ZP_05100615.1| crossover junction endodeoxyribonuclease RuvC [Roseobacter sp.
           GAI101]
 gi|214044279|gb|EEB84917.1| crossover junction endodeoxyribonuclease RuvC [Roseobacter sp.
           GAI101]
          Length = 168

 Score =  164 bits (414), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 91/156 (58%), Positives = 110/156 (70%), Gaps = 1/156 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           IR+IGIDPGLR  GWGI+DVAG  L  V++G  VS     L  RL  L+  LT +IK + 
Sbjct: 2   IRVIGIDPGLRNMGWGIIDVAGSRLSHVANGVCVS-EGPDLGSRLLSLHGQLTRIIKTYH 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ AAVEQ FVNKD   TLKLGQAR IA+L PA A + V EYAPNT+KK V+GVGH DK 
Sbjct: 61  PQAAAVEQTFVNKDGAGTLKLGQARGIAMLVPAQAGLAVGEYAPNTVKKTVVGVGHADKG 120

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           Q+  M+KM +P +   G DAADALAIA+CHA+H  +
Sbjct: 121 QVLHMVKMQLPGAEIVGPDAADALAIAICHAHHGGA 156


>gi|240137472|ref|YP_002961943.1| RuvC; Holliday junction nuclease [Methylobacterium extorquens AM1]
 gi|240007440|gb|ACS38666.1| RuvC; Holliday junction nuclease [Methylobacterium extorquens AM1]
          Length = 202

 Score =  163 bits (413), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 86/157 (54%), Positives = 113/157 (71%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M   +RI+GIDPGLRRTGWG++   G  L +++ G + S     LA RL +L+EGLT ++
Sbjct: 14  MTTDVRILGIDPGLRRTGWGLITARGSKLSYLACGVVTSDGDLPLALRLRELHEGLTRIV 73

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             + P+E +VE+ FVNKDA ATLKLG ARA+A+L PALA +PV+EYA N +KK V G GH
Sbjct: 74  TTYTPDEVSVEETFVNKDAQATLKLGHARAVALLVPALAGLPVAEYAANLVKKTVAGNGH 133

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYH 157
            +K QI  M+K L+P++ FK  DAADALAIA+ HA H
Sbjct: 134 AEKVQIQAMVKFLLPKAEFKLADAADALAIAITHASH 170


>gi|254559649|ref|YP_003066744.1| RuvC; Holliday junction nuclease [Methylobacterium extorquens DM4]
 gi|254266927|emb|CAX22726.1| RuvC; Holliday junction nuclease [Methylobacterium extorquens DM4]
          Length = 202

 Score =  163 bits (412), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 86/157 (54%), Positives = 113/157 (71%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M   +RI+GIDPGLRRTGWG++   G  L +++ G + S     LA RL +L+EGLT ++
Sbjct: 14  MTTDVRILGIDPGLRRTGWGLITARGSKLSYLACGVVTSDGDLPLALRLRELHEGLTRIV 73

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             + P+E +VE+ FVNKDA ATLKLG ARA+A+L PALA +PV+EYA N +KK V G GH
Sbjct: 74  TTYTPDEVSVEETFVNKDAQATLKLGHARAVALLVPALAGLPVAEYAANLVKKTVAGNGH 133

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYH 157
            +K QI  M+K L+P++ FK  DAADALAIA+ HA H
Sbjct: 134 AEKVQIQAMVKFLLPKAEFKLADAADALAIAITHASH 170


>gi|163850395|ref|YP_001638438.1| crossover junction endodeoxyribonuclease RuvC [Methylobacterium
           extorquens PA1]
 gi|218528955|ref|YP_002419771.1| Holliday junction resolvase [Methylobacterium chloromethanicum CM4]
 gi|226698759|sp|A9W1B1|RUVC_METEP RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|254767477|sp|B7L253|RUVC_METC4 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|163662000|gb|ABY29367.1| crossover junction endodeoxyribonuclease RuvC [Methylobacterium
           extorquens PA1]
 gi|218521258|gb|ACK81843.1| crossover junction endodeoxyribonuclease RuvC [Methylobacterium
           chloromethanicum CM4]
          Length = 189

 Score =  163 bits (412), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 86/157 (54%), Positives = 113/157 (71%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M   +RI+GIDPGLRRTGWG++   G  L +++ G + S     LA RL +L+EGLT ++
Sbjct: 1   MTTDVRILGIDPGLRRTGWGLITARGSKLSYLACGVVTSDGDLPLALRLRELHEGLTRIV 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             + P+E +VE+ FVNKDA ATLKLG ARA+A+L PALA +PV+EYA N +KK V G GH
Sbjct: 61  TTYTPDEVSVEETFVNKDAQATLKLGHARAVALLVPALAGLPVAEYAANLVKKTVAGNGH 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYH 157
            +K QI  M+K L+P++ FK  DAADALAIA+ HA H
Sbjct: 121 AEKVQIQAMVKFLLPKAEFKLADAADALAIAITHASH 157


>gi|299134169|ref|ZP_07027362.1| crossover junction endodeoxyribonuclease RuvC [Afipia sp. 1NLS2]
 gi|298590916|gb|EFI51118.1| crossover junction endodeoxyribonuclease RuvC [Afipia sp. 1NLS2]
          Length = 171

 Score =  162 bits (410), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 86/158 (54%), Positives = 114/158 (72%)

Query: 3   KSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
           ++IRI+GIDPGLRRTGWG++DV G+ L +V  G++ S     L+ RL  ++EGL  V+  
Sbjct: 4   RAIRILGIDPGLRRTGWGVIDVDGNRLIYVGCGSVESRESLPLSERLLAIHEGLLKVMSE 63

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
             P EAA+EQ FVNKD   TLKLGQAR +A+L PA++ I V+EYAPN +KK V+G GH D
Sbjct: 64  HGPMEAAIEQTFVNKDGAGTLKLGQARGVAMLVPAMSGISVAEYAPNQVKKTVVGAGHAD 123

Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           K QI +ML +L+P++     DAADALAIA+ HA+H  S
Sbjct: 124 KNQIRVMLGVLLPKAQPATPDAADALAIAITHAHHRQS 161


>gi|162146621|ref|YP_001601080.1| Holliday junction resolvase [Gluconacetobacter diazotrophicus PAl
           5]
 gi|209543387|ref|YP_002275616.1| Holliday junction resolvase [Gluconacetobacter diazotrophicus PAl
           5]
 gi|189046069|sp|A9HAV5|RUVC_GLUDA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|161785196|emb|CAP54742.1| Crossover junction endodeoxyribonuclease ruvC [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209531064|gb|ACI51001.1| crossover junction endodeoxyribonuclease RuvC [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 168

 Score =  162 bits (409), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 75/156 (48%), Positives = 109/156 (69%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPGLR TGWG+VDV G+ LC V+ G I +     +  RL  L++ L D+++ + 
Sbjct: 2   VRLLGIDPGLRFTGWGLVDVDGNRLCHVADGVIATDGDAPVPERLRCLHDSLLDLVRRYG 61

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P EAAVE+ +VN++  +TLKLG AR +A+L PALA I VSEY    +K+AV+G G   K 
Sbjct: 62  PREAAVEETYVNRNGASTLKLGYARGVALLVPALAGIAVSEYGAMAVKRAVVGTGAASKD 121

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           Q+ MM++ L+P +  +  DA+DALA+A+CHA+H  S
Sbjct: 122 QVEMMVRRLLPGATIRRADASDALAVAICHAHHRAS 157


>gi|220920331|ref|YP_002495632.1| Holliday junction resolvase [Methylobacterium nodulans ORS 2060]
 gi|219944937|gb|ACL55329.1| crossover junction endodeoxyribonuclease RuvC [Methylobacterium
           nodulans ORS 2060]
          Length = 189

 Score =  161 bits (408), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 85/155 (54%), Positives = 112/155 (72%)

Query: 3   KSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
           + +RI+GIDPGLRRTGWG++ V G  L FVS G + S     LA RL  L++GL+ V+  
Sbjct: 5   EPVRILGIDPGLRRTGWGLITVTGTRLAFVSCGVLTSDGDDDLALRLRDLHDGLSRVVAA 64

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
            +P+E AVE+ FVNKDA ATLKLG ARA+A+L PALA +PV+EYA N +KK V+G GH +
Sbjct: 65  MQPDEVAVEETFVNKDAQATLKLGHARAVALLVPALAGLPVAEYAANLVKKTVVGAGHAE 124

Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYH 157
           K QI  M++ L+P++     DAADALA+A+ HA H
Sbjct: 125 KGQIAAMVRFLLPKADPATADAADALAVAITHAQH 159


>gi|188580170|ref|YP_001923615.1| Holliday junction resolvase [Methylobacterium populi BJ001]
 gi|238692870|sp|B1Z922|RUVC_METPB RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|179343668|gb|ACB79080.1| crossover junction endodeoxyribonuclease RuvC [Methylobacterium
           populi BJ001]
          Length = 189

 Score =  161 bits (407), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 87/157 (55%), Positives = 112/157 (71%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M   +RI+GIDPGLRRTGWG++   G  L +++ G + S     LA RL +L+EGLT V+
Sbjct: 1   MTTDVRILGIDPGLRRTGWGLITARGTKLSYLACGVVTSDGDLPLALRLRELHEGLTRVL 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
               P+E +VE+ FVNKDA ATLKLG ARA+A+L PALA +PV+EYA N +KK V G GH
Sbjct: 61  TTHAPDEVSVEETFVNKDAQATLKLGHARAVALLVPALAGLPVAEYAANLVKKTVAGNGH 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYH 157
            +K QI  M+K L+P++ FK  DAADALAIA+ HA H
Sbjct: 121 AEKVQIQAMVKFLLPKAEFKLADAADALAIAITHASH 157


>gi|83954483|ref|ZP_00963194.1| Holliday junction resolvase [Sulfitobacter sp. NAS-14.1]
 gi|83840767|gb|EAP79938.1| Holliday junction resolvase [Sulfitobacter sp. NAS-14.1]
          Length = 168

 Score =  160 bits (406), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 87/156 (55%), Positives = 110/156 (70%), Gaps = 1/156 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           IR+IGIDPGLR  GWG++DVAG  +  V++G I       LA RL  L+  LT ++  +R
Sbjct: 2   IRVIGIDPGLRNMGWGVIDVAGSRITHVANG-ICQSEGADLATRLLSLHAQLTRIMVTYR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ AAVEQ FVNKD   TLKLGQAR IA+L PA A + V EYAPNT+KK V+GVGH DK 
Sbjct: 61  PDAAAVEQTFVNKDGAGTLKLGQARGIAMLVPAQAGLAVGEYAPNTVKKTVVGVGHADKG 120

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           Q+  M++M +P +   G DAADALAIA+CHA+H  +
Sbjct: 121 QVLHMVRMQLPGAEIAGPDAADALAIAICHAHHGGA 156


>gi|217976202|ref|YP_002360349.1| Holliday junction resolvase [Methylocella silvestris BL2]
 gi|254767478|sp|B8EJI4|RUVC_METSB RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|217501578|gb|ACK48987.1| crossover junction endodeoxyribonuclease RuvC [Methylocella
           silvestris BL2]
          Length = 176

 Score =  160 bits (406), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 76/136 (55%), Positives = 99/136 (72%)

Query: 2   RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           R +IRIIGIDPGLR  GWG+++ +G  L F++ G++ S    SLA RLC L+EGL  VI 
Sbjct: 3   RAAIRIIGIDPGLRNMGWGVIEASGSRLSFIACGSVHSQAGSSLAERLCALHEGLLGVIA 62

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
           +  P EAAVE+ FVN D  + LKLGQAR +A+++PALA +PV+EYA N IKK V+G GH 
Sbjct: 63  DLSPMEAAVEETFVNCDPQSALKLGQARGVALVAPALAGLPVAEYAANLIKKTVVGNGHA 122

Query: 122 DKKQIHMMLKMLMPES 137
           +K QI MM+K L+P S
Sbjct: 123 EKAQIAMMVKFLLPMS 138


>gi|170747363|ref|YP_001753623.1| crossover junction endodeoxyribonuclease RuvC [Methylobacterium
           radiotolerans JCM 2831]
 gi|238688881|sp|B1LZP2|RUVC_METRJ RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|170653885|gb|ACB22940.1| crossover junction endodeoxyribonuclease RuvC [Methylobacterium
           radiotolerans JCM 2831]
          Length = 207

 Score =  160 bits (405), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 86/160 (53%), Positives = 113/160 (70%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M   +RI+GIDPGLRRTGWG++   G  L +   G + S     LA RL +L+EG+  ++
Sbjct: 1   MTSPVRILGIDPGLRRTGWGLITAQGTKLTYGDCGVVTSDGELPLALRLRELFEGIGRIV 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
           +  RP+E AVE+ FVNKDA ATLKLG ARA+A+L PALA +PV EYAPN IKK V G GH
Sbjct: 61  EAVRPDEVAVEETFVNKDAQATLKLGHARAMALLVPALAGLPVFEYAPNLIKKTVAGSGH 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
            +K QI  M++ L+P++ F+  DAADALAIA+ HA H ++
Sbjct: 121 AEKVQIQAMVRFLLPKAEFRVADAADALAIAITHASHRDA 160


>gi|114765388|ref|ZP_01444503.1| Holliday junction resolvase [Pelagibaca bermudensis HTCC2601]
 gi|114542231|gb|EAU45261.1| Holliday junction resolvase [Roseovarius sp. HTCC2601]
          Length = 163

 Score =  160 bits (405), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 89/161 (55%), Positives = 111/161 (68%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPGLRR GWGI+D  G  L  V++G   S     LA RL  L+  LT+V+  + 
Sbjct: 1   MRVLGIDPGLRRLGWGIIDAEGSRLRHVANGVCESEGGDDLATRLLALHRQLTEVLTRFV 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ AAVEQ FVNKDAV TLKLGQAR +A+L PA   +PV EYAPN +KK V+GVGH DK+
Sbjct: 61  PQIAAVEQTFVNKDAVGTLKLGQARGVALLVPAQFGLPVGEYAPNKVKKTVVGVGHADKR 120

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
           QI  M+KM +P     G DAADALAIA+CHA+H      +I
Sbjct: 121 QIDHMVKMQLPGVQIAGPDAADALAIAICHAHHVGPQQARI 161


>gi|323138243|ref|ZP_08073315.1| crossover junction endodeoxyribonuclease RuvC [Methylocystis sp.
           ATCC 49242]
 gi|322396495|gb|EFX99024.1| crossover junction endodeoxyribonuclease RuvC [Methylocystis sp.
           ATCC 49242]
          Length = 168

 Score =  160 bits (404), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 84/153 (54%), Positives = 111/153 (72%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           IRI+GIDPGLR TGWG+++  G  L FV+ G + S     +  RL QL+EGL  VI ++ 
Sbjct: 6   IRILGIDPGLRNTGWGVIESQGSRLSFVACGRVKSDGALDMGNRLRQLHEGLMQVIADYG 65

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P EAAVE+ FVN+D  +TLKLGQAR IA+++PALA + ++EYA N +KK V+G GH DK 
Sbjct: 66  PHEAAVEETFVNRDPQSTLKLGQARGIALMAPALAGLVIAEYAANLVKKIVVGAGHADKA 125

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYH 157
           QI MM+++L+P S     DAADALA+A+CHA H
Sbjct: 126 QIQMMVRVLLPASQATSADAADALAVAICHAQH 158


>gi|170740566|ref|YP_001769221.1| Holliday junction resolvase [Methylobacterium sp. 4-46]
 gi|168194840|gb|ACA16787.1| crossover junction endodeoxyribonuclease RuvC [Methylobacterium sp.
           4-46]
          Length = 217

 Score =  159 bits (401), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 85/153 (55%), Positives = 111/153 (72%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGLRRTGWG++ V G  L F + G + S    +LA RL  L++GL  V+   R
Sbjct: 6   VRILGIDPGLRRTGWGLITVTGTRLAFEACGVLTSDGDDALALRLRDLHDGLVRVVAAQR 65

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+E AVE+ FVNKDA ATLKLG ARA+A+L PALA +PV+EYA N +KK V+GVGH +K 
Sbjct: 66  PDEVAVEETFVNKDAQATLKLGHARAVALLVPALAGLPVAEYAANLVKKTVVGVGHAEKG 125

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYH 157
           Q+  M++ L+P++     DAADALAIA+ HA H
Sbjct: 126 QVAAMVRFLLPKADPATADAADALAIAITHAQH 158


>gi|83943910|ref|ZP_00956367.1| Holliday junction resolvase [Sulfitobacter sp. EE-36]
 gi|83845157|gb|EAP83037.1| Holliday junction resolvase [Sulfitobacter sp. EE-36]
          Length = 168

 Score =  158 bits (400), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 87/156 (55%), Positives = 109/156 (69%), Gaps = 1/156 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           IR+IGIDPGLR  GWG++DVAG  +  V++G I       LA RL  L+  LT ++   R
Sbjct: 2   IRVIGIDPGLRNMGWGVIDVAGSRITHVANG-ICQSEGADLATRLLSLHAQLTRIMVTCR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ AAVEQ FVNKD   TLKLGQAR IA+L PA A + V EYAPNT+KK V+GVGH DK 
Sbjct: 61  PDAAAVEQTFVNKDGAGTLKLGQARGIAMLVPAQAGLAVGEYAPNTVKKTVVGVGHADKG 120

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           Q+  M++M +P +   G DAADALAIA+CHA+H  +
Sbjct: 121 QVLHMVRMQLPGAEIAGPDAADALAIAICHAHHGGA 156


>gi|154246994|ref|YP_001417952.1| Holliday junction resolvase [Xanthobacter autotrophicus Py2]
 gi|238686726|sp|A7IJV2|RUVC_XANP2 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|154161079|gb|ABS68295.1| crossover junction endodeoxyribonuclease RuvC [Xanthobacter
           autotrophicus Py2]
          Length = 169

 Score =  158 bits (400), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 73/151 (48%), Positives = 108/151 (71%)

Query: 3   KSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
            +IRI+G+DPGLRRTGWG++DV G  L FV+ GTI+   +  +  RL  L+  L  VI+ 
Sbjct: 4   NAIRILGLDPGLRRTGWGVIDVTGSRLAFVACGTILPPEQAPMGERLAHLHRELLGVIER 63

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
           + P+EAAVE+ FVN +  +TLKLGQAR + +L+PA   +PV+EYA   +KK+V+G G  +
Sbjct: 64  FSPQEAAVEETFVNMNPSSTLKLGQARGVVLLAPAQMGLPVAEYAALLVKKSVVGAGRAE 123

Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAIAVC 153
           K Q+ MM+ +L+P++  + +DA+DALA+AV 
Sbjct: 124 KAQVRMMIGILLPKATPETEDASDALAVAVT 154


>gi|58040112|ref|YP_192076.1| Holliday junction resolvase [Gluconobacter oxydans 621H]
 gi|81557004|sp|Q5FQC6|RUVC_GLUOX RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|58002526|gb|AAW61420.1| Crossover junction endodeoxyribonuclease RuvC [Gluconobacter
           oxydans 621H]
          Length = 168

 Score =  158 bits (400), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 72/149 (48%), Positives = 108/149 (72%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           IR++GIDPGLR  GWGI+DV G++L  V+SG I +   +S+  RLC+L+  L  +I+ + 
Sbjct: 2   IRLMGIDPGLRFMGWGIIDVDGNHLKHVASGVIGTDGSESVPLRLCELHGALKKLIREYA 61

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P EAAVE+ +VN++  +TLKLG AR +A+L+PA   +PV+EY   T+KK+V+G G   K+
Sbjct: 62  PAEAAVEETYVNRNGSSTLKLGYARGVALLTPAYEGLPVAEYGAMTVKKSVVGTGSASKE 121

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVC 153
           Q+ MM+K L+P +  +  DA+DALA+A+C
Sbjct: 122 QVTMMVKRLLPGAEIRKADASDALAVAIC 150


>gi|23015562|ref|ZP_00055334.1| COG0817: Holliday junction resolvasome, endonuclease subunit
           [Magnetospirillum magnetotacticum MS-1]
          Length = 166

 Score =  158 bits (399), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 74/153 (48%), Positives = 104/153 (67%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+G+DPGLR TGWGI+D   + L  V+ G I      +L+ RL QL++ +  VI  + 
Sbjct: 1   MRILGLDPGLRNTGWGIIDAVDNRLRHVADGVIRPDASAALSERLVQLHDAIMAVIAEYG 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+EAAVE+ FVN +  +TLKLGQAR + +L PA A +PV EYA   +K++V+G G   K+
Sbjct: 61  PDEAAVEETFVNMNPASTLKLGQARGVVMLVPAKAGLPVGEYAATLVKQSVVGTGRAAKE 120

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYH 157
           Q+ MM+K L+P       DAADALA+A+CHA+H
Sbjct: 121 QVGMMVKTLLPGCLAATPDAADALAVAICHAHH 153


>gi|258543670|ref|YP_003189103.1| Holliday junction resolvase [Acetobacter pasteurianus IFO 3283-01]
 gi|256634748|dbj|BAI00724.1| Holliday junction resolvase RuvC [Acetobacter pasteurianus IFO
           3283-01]
 gi|256637804|dbj|BAI03773.1| Holliday junction resolvase RuvC [Acetobacter pasteurianus IFO
           3283-03]
 gi|256640858|dbj|BAI06820.1| Holliday junction resolvase RuvC [Acetobacter pasteurianus IFO
           3283-07]
 gi|256643913|dbj|BAI09868.1| Holliday junction resolvase RuvC [Acetobacter pasteurianus IFO
           3283-22]
 gi|256646968|dbj|BAI12916.1| Holliday junction resolvase RuvC [Acetobacter pasteurianus IFO
           3283-26]
 gi|256650021|dbj|BAI15962.1| Holliday junction resolvase RuvC [Acetobacter pasteurianus IFO
           3283-32]
 gi|256653011|dbj|BAI18945.1| Holliday junction resolvase RuvC [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256656065|dbj|BAI21992.1| Holliday junction resolvase RuvC [Acetobacter pasteurianus IFO
           3283-12]
          Length = 168

 Score =  157 bits (398), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 74/159 (46%), Positives = 110/159 (69%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPGLR TGWG++DV G+ L  V +G I +    S+  RL  L++ L  +I    
Sbjct: 2   VRLLGIDPGLRFTGWGVIDVEGNRLRHVENGVIATNSADSVPDRLKVLHDNLLMLIDRLA 61

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+E+AVE+ +VN++  ATLKLG AR +A+L PALA + V+EY   ++KK+V+G G  DKK
Sbjct: 62  PQESAVEETYVNRNGSATLKLGYARGVALLVPALAGVSVAEYGALSVKKSVVGTGSADKK 121

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYY 163
           Q+ MM++ L+P +     DA+DALA+A+CHA+H  S  +
Sbjct: 122 QVEMMVRRLLPGAEIIRADASDALAVAICHAHHRASARH 160


>gi|84687719|ref|ZP_01015592.1| Holliday junction resolvase [Maritimibacter alkaliphilus HTCC2654]
 gi|84664302|gb|EAQ10793.1| Holliday junction resolvase [Rhodobacterales bacterium HTCC2654]
          Length = 165

 Score =  157 bits (398), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 84/154 (54%), Positives = 110/154 (71%), Gaps = 1/154 (0%)

Query: 8   IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEE 67
           +GIDPGLR  GWG++DV+G  +  +++G +     + L  RL  L++ LTDV+  + P+ 
Sbjct: 1   MGIDPGLRNLGWGVIDVSGSRISHIANG-VCHGTGEDLGDRLLALFDALTDVVARFAPDT 59

Query: 68  AAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIH 127
           AAVEQ FVNKD   TLKLGQAR IA+L PA A + V EYAPNTIKK V+GVGH DK+QI 
Sbjct: 60  AAVEQTFVNKDGAGTLKLGQARGIAMLVPARAGLSVGEYAPNTIKKTVVGVGHADKRQID 119

Query: 128 MMLKMLMPESFFKGKDAADALAIAVCHAYHANSG 161
            M+++ +P     G DAADALAIA+CHA+HA +G
Sbjct: 120 HMVRLQLPGVEIAGPDAADALAIALCHAHHARAG 153


>gi|329113837|ref|ZP_08242608.1| Crossover junction endodeoxyribonuclease RuvC [Acetobacter pomorum
           DM001]
 gi|326696847|gb|EGE48517.1| Crossover junction endodeoxyribonuclease RuvC [Acetobacter pomorum
           DM001]
          Length = 168

 Score =  157 bits (396), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 74/159 (46%), Positives = 108/159 (67%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPGLR TGWG++DV G+ L  V +G I +    S+  RL  L++ L  +I    
Sbjct: 2   VRLLGIDPGLRFTGWGVIDVEGNRLRHVENGIIATNSADSVPDRLKVLHDNLLMLINRLE 61

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P EAAVE+ +VN++  ATLKLG AR +A+L PAL  + V+EY   ++KK+V+G G  DKK
Sbjct: 62  PAEAAVEETYVNRNGSATLKLGYARGVALLVPALVGVSVAEYGALSVKKSVVGTGSADKK 121

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYY 163
           Q+ MM++ L+P +     DA+DALA+A+CHA+H  S  +
Sbjct: 122 QVEMMVRRLLPGAEIVRADASDALAVAICHAHHRASARH 160


>gi|83308728|emb|CAJ01638.1| holliday junction resolvase, endonuclease subunit, ruvC
           [Methylocapsa acidiphila]
          Length = 182

 Score =  156 bits (395), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 71/134 (52%), Positives = 100/134 (74%)

Query: 2   RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           +++IRIIGIDPGLRRTGWG+++  G  L +V+ G + S  + +L+ RL +L++GL  VI 
Sbjct: 3   QETIRIIGIDPGLRRTGWGVIESCGSRLIYVACGAVRSNEKAALSERLRELHDGLAAVIS 62

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
            + P EAAVE+ FVN+D  + LKLGQAR IA+L+PA A +PV+EYA N IKK ++G GH 
Sbjct: 63  AYAPAEAAVEETFVNRDPQSALKLGQARGIALLAPARAGLPVAEYAANLIKKTIVGAGHA 122

Query: 122 DKKQIHMMLKMLMP 135
           +K Q+ MM+K L+P
Sbjct: 123 EKAQVAMMVKFLLP 136


>gi|85703561|ref|ZP_01034665.1| Holliday junction resolvase [Roseovarius sp. 217]
 gi|85672489|gb|EAQ27346.1| Holliday junction resolvase [Roseovarius sp. 217]
          Length = 168

 Score =  156 bits (395), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 84/156 (53%), Positives = 109/156 (69%), Gaps = 1/156 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPGLR  GWG+++V G  L  V++G I       LA RL  LYE LTD++  + 
Sbjct: 1   MRVLGIDPGLRNLGWGVIEVEGSRLSHVANG-ICHSTGPDLAARLLSLYEQLTDILHRFD 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ AAVEQ FVNKD   TLKLGQAR IA+L PA   + V EY+PNT+KK V+GVGH  K+
Sbjct: 60  PQAAAVEQTFVNKDGAGTLKLGQARGIALLVPAQYGLTVGEYSPNTVKKTVVGVGHAAKE 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           Q+  M+K+ +P     G DAADALAIA+CHA+H+ S
Sbjct: 120 QVAHMVKVQLPGVLLAGPDAADALAIAICHAHHSRS 155


>gi|149203737|ref|ZP_01880706.1| Holliday junction resolvase [Roseovarius sp. TM1035]
 gi|149142854|gb|EDM30896.1| Holliday junction resolvase [Roseovarius sp. TM1035]
          Length = 214

 Score =  156 bits (394), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 85/156 (54%), Positives = 110/156 (70%), Gaps = 1/156 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPGLR  GWG+++V+G  L  V++G I       LA RL  LYE LTD++  + 
Sbjct: 47  MRVLGIDPGLRNLGWGVIEVSGSRLSHVANG-ICHSSGPDLAARLLSLYEQLTDILHRFD 105

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ AAVEQ FVNKD   TLKLGQAR IA+L PA   + V EY+PNT+KK V+GVGH  K+
Sbjct: 106 PQAAAVEQTFVNKDGAGTLKLGQARGIALLVPAQYGLTVGEYSPNTVKKTVVGVGHAAKE 165

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           Q+  M+K+ +P     G DAADALAIA+CHA+HA S
Sbjct: 166 QVAHMVKVQLPGVVLAGPDAADALAIAICHAHHARS 201


>gi|310816585|ref|YP_003964549.1| crossover junction endodeoxyribonuclease RuvC [Ketogulonicigenium
           vulgare Y25]
 gi|308755320|gb|ADO43249.1| crossover junction endodeoxyribonuclease RuvC [Ketogulonicigenium
           vulgare Y25]
          Length = 176

 Score =  155 bits (393), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 85/156 (54%), Positives = 111/156 (71%), Gaps = 1/156 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPGLR  GWG++DV G  +  V++G I       LA RL  L+  LT V + + 
Sbjct: 1   MRVLGIDPGLRNMGWGVIDVQGTRISHVANG-ICHSAGDDLAARLLSLHGQLTRVFETYA 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ AAVE  FVN+DAVATLKLGQARAIA+L PA A + V EYAPN +KKA++GVGH DK 
Sbjct: 60  PDTAAVENTFVNRDAVATLKLGQARAIALLVPAQAGLSVGEYAPNAVKKAIVGVGHADKG 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           Q+  M+++ +P     G DAADALAIA+CHA+H+ S
Sbjct: 120 QVEHMVRLHLPGVKLVGVDAADALAIAICHAHHSQS 155


>gi|39934174|ref|NP_946450.1| Holliday junction resolvase [Rhodopseudomonas palustris CGA009]
 gi|192289699|ref|YP_001990304.1| Holliday junction resolvase [Rhodopseudomonas palustris TIE-1]
 gi|81563777|sp|Q6NAT1|RUVC_RHOPA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|229558763|sp|B3QHS1|RUVC_RHOPT RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|39648022|emb|CAE26542.1| RuvC; Holliday junction nuclease [Rhodopseudomonas palustris
           CGA009]
 gi|192283448|gb|ACE99828.1| crossover junction endodeoxyribonuclease RuvC [Rhodopseudomonas
           palustris TIE-1]
          Length = 174

 Score =  155 bits (393), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 89/157 (56%), Positives = 115/157 (73%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           +R+ IRI+GIDPGLRRTGWG+VD  G+ L +V+ G++       LA RL  +++GL  V+
Sbjct: 6   IRRPIRILGIDPGLRRTGWGVVDSDGNRLVYVACGSVEPRDTLPLAERLLAIHDGLAKVL 65

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
               P EAAVEQ FVNKD  ATLKLGQAR +A+L PA+  + V+EYAPN +KK V+G GH
Sbjct: 66  AAHAPAEAAVEQTFVNKDGAATLKLGQARGVAMLVPAMHGLLVAEYAPNLVKKTVVGAGH 125

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYH 157
            DK QI MMLK+L+P++  K  DAADALAIA+ HA+H
Sbjct: 126 ADKTQIQMMLKILLPKADPKTADAADALAIAITHAHH 162


>gi|84516660|ref|ZP_01004019.1| Holliday junction resolvase [Loktanella vestfoldensis SKA53]
 gi|84509696|gb|EAQ06154.1| Holliday junction resolvase [Loktanella vestfoldensis SKA53]
          Length = 168

 Score =  155 bits (392), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 87/156 (55%), Positives = 108/156 (69%), Gaps = 1/156 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPGLR  GWG++DVAG  +  V++G I       LA RL  L++ L  +I   R
Sbjct: 1   MRVLGIDPGLRNMGWGLIDVAGSRITHVANG-IAHSTGDDLAMRLLSLHDQLAAMIALHR 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P +AAVEQ FVNKD V TLKLGQAR IA+L  A A + + EYAPN IKKAV+GVGH DK 
Sbjct: 60  PTQAAVEQTFVNKDGVGTLKLGQARGIALLVTAQAGLTIGEYAPNAIKKAVVGVGHADKV 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           QI  M+K+ +P     G DAADALAIA+CHA+H  S
Sbjct: 120 QIAHMVKLQLPGVKLAGPDAADALAIAICHAHHLQS 155


>gi|163745817|ref|ZP_02153176.1| Holliday junction resolvase [Oceanibulbus indolifex HEL-45]
 gi|161380562|gb|EDQ04972.1| Holliday junction resolvase [Oceanibulbus indolifex HEL-45]
          Length = 168

 Score =  155 bits (392), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 86/156 (55%), Positives = 107/156 (68%), Gaps = 1/156 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           IR+IGIDPGLR  GWG++DV+G  +  V++G I     + LA RL  L+  LT V+  +R
Sbjct: 2   IRVIGIDPGLRNLGWGVIDVSGSRIAHVANG-ICHSEGEDLAARLLSLHGQLTRVLATYR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P  AAVEQ FVNKD   TLKLGQAR IA+L PA   + V EYAPN +KK V+GVGH DK 
Sbjct: 61  PGAAAVEQTFVNKDGAGTLKLGQARGIAMLVPAQFGLTVGEYAPNKVKKTVVGVGHADKG 120

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           Q+  M++M MP     G DAADALAIA+CHA+H  +
Sbjct: 121 QVAHMVRMQMPGIEIAGPDAADALAIAICHAHHGGA 156


>gi|146338240|ref|YP_001203288.1| Holliday junction resolvase [Bradyrhizobium sp. ORS278]
 gi|166231583|sp|A4YMC5|RUVC_BRASO RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|146191046|emb|CAL75051.1| Crossover junction endodeoxyribonuclease ruvC (Holliday junction
           nuclease ruvC) [Bradyrhizobium sp. ORS278]
          Length = 175

 Score =  154 bits (389), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 83/147 (56%), Positives = 109/147 (74%)

Query: 11  DPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAV 70
           DPGLRRTGWG+++  G+ L +V  G++       LA RL  ++EGL  V+ +++P EAAV
Sbjct: 16  DPGLRRTGWGVIESEGNRLIYVGCGSVEPPDDLPLASRLLAIHEGLAKVLADFQPLEAAV 75

Query: 71  EQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMML 130
           EQ FVNKD VATLKLGQAR IA+L+PA+  I V+EYAPN +KK V+G GH DK QI +ML
Sbjct: 76  EQTFVNKDGVATLKLGQARGIAMLAPAMFGITVAEYAPNQVKKTVVGAGHADKGQIAVML 135

Query: 131 KMLMPESFFKGKDAADALAIAVCHAYH 157
           K+L+P++     DAADALAIA+ HA+H
Sbjct: 136 KILLPKAEPPSADAADALAIAITHAHH 162


>gi|182677006|ref|YP_001831152.1| Holliday junction resolvase [Beijerinckia indica subsp. indica ATCC
           9039]
 gi|226725467|sp|B2IAW3|RUVC_BEII9 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|182632889|gb|ACB93663.1| crossover junction endodeoxyribonuclease RuvC [Beijerinckia indica
           subsp. indica ATCC 9039]
          Length = 175

 Score =  154 bits (389), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 74/137 (54%), Positives = 99/137 (72%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M   +RI+GIDPGLR  GWGIV++ G NL +V+SG + S  +  LA RL  L+ GL  VI
Sbjct: 2   MPPRLRILGIDPGLRNMGWGIVELLGSNLTYVASGVVHSDGKGELAHRLKDLHVGLAGVI 61

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             + P EAA+E+ FVN+D  +TLKLGQAR IA++ PALA + V+EYA N IKK V G GH
Sbjct: 62  DAYTPHEAAIEETFVNRDPQSTLKLGQARGIALVVPALADLAVAEYAANLIKKTVTGNGH 121

Query: 121 GDKKQIHMMLKMLMPES 137
            +K+Q+ MM+K+L+P+S
Sbjct: 122 AEKQQVAMMVKILLPKS 138


>gi|316932641|ref|YP_004107623.1| crossover junction endodeoxyribonuclease RuvC [Rhodopseudomonas
           palustris DX-1]
 gi|315600355|gb|ADU42890.1| crossover junction endodeoxyribonuclease RuvC [Rhodopseudomonas
           palustris DX-1]
          Length = 173

 Score =  154 bits (388), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 87/155 (56%), Positives = 114/155 (73%)

Query: 3   KSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
           +S+RI+GIDPGLRRTGWG+V+  G+ L +V+ G++       LA RL  +++GL  V+  
Sbjct: 7   RSVRILGIDPGLRRTGWGVVESEGNRLIYVACGSVEPRDTLPLAERLLAIHDGLAKVLAA 66

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
             P EAAVEQ FVNKD  ATLKLGQAR +A+L PA+  + V+EYAPN +KK V+G GH D
Sbjct: 67  HAPAEAAVEQTFVNKDGAATLKLGQARGVAMLVPAMHGLLVAEYAPNLVKKTVVGAGHAD 126

Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYH 157
           K QI MMLK+L+P++  K  DAADALAIA+ HA+H
Sbjct: 127 KTQIQMMLKILLPKAEPKTADAADALAIAITHAHH 161


>gi|83950118|ref|ZP_00958851.1| Holliday junction resolvase [Roseovarius nubinhibens ISM]
 gi|83838017|gb|EAP77313.1| Holliday junction resolvase [Roseovarius nubinhibens ISM]
          Length = 167

 Score =  153 bits (387), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 85/157 (54%), Positives = 110/157 (70%), Gaps = 1/157 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPGLR  GWG++DV+G  L  V++G +       LA RL  L+  LT+++  + 
Sbjct: 1   MRVLGIDPGLRNLGWGVIDVSGSRLSHVANG-VCHSTGDDLAQRLLSLHIQLTEIVARFA 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ AA+EQ FVNKD VATLKLGQAR IA+L PA A I V EYAPN +KK V+GVGH DK 
Sbjct: 60  PDTAAIEQTFVNKDGVATLKLGQARGIALLVPAQAGISVGEYAPNRVKKTVVGVGHADKG 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSG 161
           QI  M+KM +P +     DAADALAIA+CHA++   G
Sbjct: 120 QIAHMVKMQLPGANPASPDAADALAIAICHAHYTRGG 156


>gi|146277277|ref|YP_001167436.1| Holliday junction resolvase [Rhodobacter sphaeroides ATCC 17025]
 gi|166233291|sp|A4WRW7|RUVC_RHOS5 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|145555518|gb|ABP70131.1| crossover junction endodeoxyribonuclease RuvC [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 168

 Score =  152 bits (384), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 84/156 (53%), Positives = 109/156 (69%), Gaps = 1/156 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPGLR  GWG++DV+G  L  V++G I       LA RL  L+  LTD++  + 
Sbjct: 1   MRVLGIDPGLRNMGWGVIDVSGTRLAHVANG-ICHSDSGDLAQRLLSLHRQLTDILARFA 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ AAVE  FVNKD VATLKLGQAR IA+L PA A + V EYAPN +KK V+GVGH  K+
Sbjct: 60  PDTAAVEHTFVNKDGVATLKLGQARGIALLVPAQAGLAVGEYAPNAVKKTVVGVGHAAKE 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           QI  M+++ +P     G DAADALA+A+CHA+H  S
Sbjct: 120 QIQHMVRLHLPGVELAGADAADALAVAICHAHHVQS 155


>gi|144898112|emb|CAM74976.1| Crossover junction endodeoxyribonuclease [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 164

 Score =  152 bits (383), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 78/156 (50%), Positives = 111/156 (71%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++G+DPGLR TGWG++++  + L ++  GTI S  + SLA RL QL+ G+  VI  W 
Sbjct: 1   MRVLGLDPGLRITGWGMIEMIDNRLRYLGDGTIRSDDKLSLAERLGQLHRGVLQVIAAWS 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ A VEQ FVNK+  +TLKLGQAR + +L+PALA + V EYAP  +K+AV+G G   K+
Sbjct: 61  PDAAGVEQTFVNKNPESTLKLGQARGVVLLAPALAGLEVGEYAPTQVKQAVVGTGRAAKE 120

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           Q+ MM++ L+P       DAADALA+A+CHA+HA +
Sbjct: 121 QVGMMVRTLLPGCLVTSADAADALAVAICHAHHAAT 156


>gi|254441770|ref|ZP_05055263.1| crossover junction endodeoxyribonuclease RuvC [Octadecabacter
           antarcticus 307]
 gi|198251848|gb|EDY76163.1| crossover junction endodeoxyribonuclease RuvC [Octadecabacter
           antarcticus 307]
          Length = 162

 Score =  152 bits (383), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 78/145 (53%), Positives = 97/145 (66%), Gaps = 1/145 (0%)

Query: 16  RTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFV 75
            TGWG++ V G  L  V++G   S  +  LA RL  L++ L  VI  + P+ AAVEQ FV
Sbjct: 2   NTGWGVIVVNGSRLSHVANGVCKSG-KGDLAVRLLALHDQLEAVIAEFAPDAAAVEQTFV 60

Query: 76  NKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMP 135
           N +  ATLKLGQAR IA+L PA A + V EYAPN IKKAV+GVGH DK QI  M+K+ +P
Sbjct: 61  NSNGAATLKLGQARGIAMLVPARAGLEVGEYAPNAIKKAVVGVGHADKAQIAHMVKLQLP 120

Query: 136 ESFFKGKDAADALAIAVCHAYHANS 160
                G D+ADALAIA+CHA+H  S
Sbjct: 121 GVMLSGPDSADALAIAICHAHHLQS 145


>gi|260427415|ref|ZP_05781394.1| crossover junction endodeoxyribonuclease RuvC [Citreicella sp.
           SE45]
 gi|260421907|gb|EEX15158.1| crossover junction endodeoxyribonuclease RuvC [Citreicella sp.
           SE45]
          Length = 162

 Score =  151 bits (382), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 84/161 (52%), Positives = 111/161 (68%), Gaps = 1/161 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPGLRR GWGI++  G  L  V++G   S   + LA RL  ++  LT+V++ + 
Sbjct: 1   MRVLGIDPGLRRLGWGIIEAEGSRLRHVANGVCESGTGE-LAVRLLSIHRQLTEVLRQYA 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ AAVEQ FVNKDA  TLKLGQAR IA+L PA   + V EYAPN++KK V+GVGH DK+
Sbjct: 60  PDVAAVEQTFVNKDAAGTLKLGQARGIALLVPAQFGLEVGEYAPNSVKKTVVGVGHADKR 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
           Q+  M+KM +P     G DAADALAIA+CH+ H      +I
Sbjct: 120 QVDHMVKMQLPGVQIVGPDAADALAIAICHSRHLGGRELRI 160


>gi|298293004|ref|YP_003694943.1| crossover junction endodeoxyribonuclease RuvC [Starkeya novella DSM
           506]
 gi|296929515|gb|ADH90324.1| crossover junction endodeoxyribonuclease RuvC [Starkeya novella DSM
           506]
          Length = 179

 Score =  151 bits (381), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 82/153 (53%), Positives = 108/153 (70%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           IRI+G+DPGLRRTGWG+++  G  L F++ GT++      LA RL  L+  L  VI    
Sbjct: 6   IRIVGLDPGLRRTGWGVIEAIGTKLSFIACGTVLPPEDDDLAARLAYLHTELVRVISVHA 65

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+EAAVE+ FVN +  +TLKLGQAR + +L+PALA +PVSEYA   +KK V+G G  DK 
Sbjct: 66  PDEAAVEETFVNMNPASTLKLGQARGVVMLTPALAGVPVSEYAALLVKKTVVGAGRADKA 125

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYH 157
           QI MM+K+L+P++ F   DAADALA+AV HA H
Sbjct: 126 QIRMMIKVLLPKADFTTDDAADALAVAVTHAQH 158


>gi|158422137|ref|YP_001523429.1| Holliday junction resolvase [Azorhizobium caulinodans ORS 571]
 gi|172048035|sp|A8IM96|RUVC_AZOC5 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|158329026|dbj|BAF86511.1| crossover junction endodeoxyribonuclease [Azorhizobium caulinodans
           ORS 571]
          Length = 169

 Score =  150 bits (378), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 78/153 (50%), Positives = 111/153 (72%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           IRIIG+DPGLRRTGWG+++  G  L +V+ GTI+      +A RL +L+ GL +V+    
Sbjct: 6   IRIIGLDPGLRRTGWGVIEAQGTRLTYVACGTILPPENAPMAERLAELHRGLAEVLARHA 65

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+EAAVE+ FVN +  +TLKLGQAR + +L+PA A + V+EYAP  +KK V+G G  +K 
Sbjct: 66  PDEAAVEETFVNMNPSSTLKLGQARGVVMLAPAQAGLSVAEYAPLLVKKTVVGAGRAEKA 125

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYH 157
           QI MM+ +L+P++  + +DAADALA+AV HA+H
Sbjct: 126 QIRMMIGVLLPKATPQTEDAADALAVAVTHAHH 158


>gi|159043652|ref|YP_001532446.1| Holliday junction resolvase [Dinoroseobacter shibae DFL 12]
 gi|189046065|sp|A8LHP8|RUVC_DINSH RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|157911412|gb|ABV92845.1| crossover junction endodeoxyribonuclease RuvC [Dinoroseobacter
           shibae DFL 12]
          Length = 176

 Score =  150 bits (378), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 85/156 (54%), Positives = 109/156 (69%), Gaps = 1/156 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPGLR  GWG++ V G  L  V++G I S   + LA RL  LY  LT+V+    
Sbjct: 1   MRVLGIDPGLRNLGWGVISVQGSRLRHVANGQIRSEGSE-LAQRLLSLYRQLTEVVAGHA 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ AAVE  FVNKDA  TLKLGQAR IA+L PA A + V+EYAPN +KK+V+GVGH  K+
Sbjct: 60  PDAAAVEHTFVNKDATGTLKLGQARGIALLVPAAAGLEVAEYAPNHVKKSVVGVGHAAKE 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           Q+  M+K+ +P     G DAADALAIA+CHA+H  S
Sbjct: 120 QVQHMVKLQLPGVVLAGADAADALAIAICHAHHLQS 155


>gi|84501644|ref|ZP_00999816.1| Holliday junction nuclease RuvC [Oceanicola batsensis HTCC2597]
 gi|84390265|gb|EAQ02824.1| Holliday junction nuclease RuvC [Oceanicola batsensis HTCC2597]
          Length = 167

 Score =  150 bits (378), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 81/156 (51%), Positives = 108/156 (69%), Gaps = 1/156 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R+IGIDPGLR  GWG++ V+G  +  V++G       + +A RL  L+  LT V+    
Sbjct: 1   MRVIGIDPGLRSLGWGVISVSGSRISHVANGQCAGSGTE-MAERLLSLHAALTAVLIEHA 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ AAVEQVFVN +   TLKLGQAR IA+L PA A +PV EYAPNT+KK+V+GVGH  K+
Sbjct: 60  PDAAAVEQVFVNTNGAGTLKLGQARGIALLVPAQAGLPVGEYAPNTVKKSVVGVGHAAKE 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           Q+  M+++ +P     G DAADALAIA+CHA+H  S
Sbjct: 120 QVQHMVRLQLPGVDLSGPDAADALAIAICHAHHLGS 155


>gi|56697948|ref|YP_168320.1| Holliday junction resolvase [Ruegeria pomeroyi DSS-3]
 gi|81558342|sp|Q5LNT6|RUVC_SILPO RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|56679685|gb|AAV96351.1| crossover junction endodeoxyribonuclease RuvC [Ruegeria pomeroyi
           DSS-3]
          Length = 165

 Score =  149 bits (376), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 79/156 (50%), Positives = 111/156 (71%), Gaps = 1/156 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGLR  GWG+++  G  L  V++G +       L  RL  L+  + +VI+ +R
Sbjct: 1   MRILGIDPGLRTLGWGVIEQRGSRLSHVANG-LCHSDGDDLGERLLSLHNQIVEVIEEYR 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P++AA+EQ FVNKD   TLKLGQAR +A+L+ A A +PV EYAPN +KK V+GVGH +K+
Sbjct: 60  PDQAAIEQTFVNKDGAGTLKLGQARGVALLTLAQAGLPVGEYAPNRVKKTVVGVGHAEKE 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           Q+  M+K+ +P    KG DAADALAIA+CHAY+ ++
Sbjct: 120 QVIHMVKLQLPGCLPKGADAADALAIAICHAYYGSA 155


>gi|296117348|ref|ZP_06835938.1| Holliday junction resolvase [Gluconacetobacter hansenii ATCC 23769]
 gi|295976114|gb|EFG82902.1| Holliday junction resolvase [Gluconacetobacter hansenii ATCC 23769]
          Length = 168

 Score =  149 bits (376), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 66/149 (44%), Positives = 102/149 (68%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGLR TGWG+++   + L  V+ G I +    S+  RL  L++ L ++ + + 
Sbjct: 2   VRILGIDPGLRFTGWGVIEARDNRLSHVADGVIATDAAMSVPLRLRHLHDALLELGRGFA 61

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+EAA+E+ +VN++  ATLKLG AR + +L P L  IPVSEY   ++K++V+G G   K+
Sbjct: 62  PDEAAIEETYVNRNGAATLKLGYARGVGLLVPVLLDIPVSEYGAKSVKRSVVGTGAATKE 121

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVC 153
           Q+ MM++ L+P +  K  DAADALA+A+C
Sbjct: 122 QVEMMVRRLLPTAIAKRSDAADALAVAIC 150


>gi|86139157|ref|ZP_01057727.1| Holliday junction resolvase [Roseobacter sp. MED193]
 gi|85824001|gb|EAQ44206.1| Holliday junction resolvase [Roseobacter sp. MED193]
          Length = 165

 Score =  149 bits (375), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 81/156 (51%), Positives = 110/156 (70%), Gaps = 1/156 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGLR  GWG+++  G  L  V++G + +     L  RL  L+  +T+VI+ + 
Sbjct: 1   MRILGIDPGLRNLGWGVIESQGSRLSHVANG-VCTSDGDDLGERLLSLHNQVTEVIEAYA 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P +AA+EQ FVNKD VATLKLGQAR +A+L+ A A +P  EYAPN +KK V+GVGH  K+
Sbjct: 60  PTQAAIEQTFVNKDGVATLKLGQARGVALLTLAKAGLPTGEYAPNRVKKTVVGVGHASKE 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           QI  M+K+ +P    KG DAADALAIA+CHAY+  +
Sbjct: 120 QIIHMVKLQLPGCAPKGADAADALAIAICHAYYGGT 155


>gi|209965102|ref|YP_002298017.1| crossover junction endodeoxyribonuclease RuvC [Rhodospirillum
           centenum SW]
 gi|209958568|gb|ACI99204.1| crossover junction endodeoxyribonuclease RuvC [Rhodospirillum
           centenum SW]
          Length = 179

 Score =  149 bits (375), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 77/156 (49%), Positives = 110/156 (70%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           IRI+G+DPGLR TGWG++DVAG  L  V+ GTI +  +Q L  RL +L++GL +VI  WR
Sbjct: 11  IRILGLDPGLRHTGWGVIDVAGSRLTHVADGTINTDEKQDLPRRLERLHDGLVEVIGVWR 70

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+E AVE+   N++  +TLKLG AR +A+L  A A + V +Y P  +KK+V+G GH +K+
Sbjct: 71  PDEVAVEETLANRNPQSTLKLGMARGVALLVGARAGLVVEQYLPMIVKKSVVGTGHAEKE 130

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           Q+  M++ML+P       DAADALA+A+CHA+ A +
Sbjct: 131 QVQHMVRMLLPGFQRSSADAADALAVAICHAHTAGT 166


>gi|126733601|ref|ZP_01749348.1| crossover junction endodeoxyribonuclease RuvC [Roseobacter sp.
           CCS2]
 gi|126716467|gb|EBA13331.1| crossover junction endodeoxyribonuclease RuvC [Roseobacter sp.
           CCS2]
          Length = 168

 Score =  149 bits (375), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 84/155 (54%), Positives = 109/155 (70%), Gaps = 5/155 (3%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQS--LAFRLCQLYEGLTDVIKN 62
           +R++GIDPGLR  GWG+++V+G  L  V++G    C  Q   LA RL  L++ LT V+  
Sbjct: 1   MRVLGIDPGLRNMGWGVIEVSGSRLGHVANGV---CRSQGDDLAARLLSLHQQLTAVLTQ 57

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
            +P+ AAVEQ FVNKD   TLKLGQAR IA+L PA A + V EYAPN +KKAV+GVGH D
Sbjct: 58  HQPQAAAVEQTFVNKDGAGTLKLGQARGIAMLVPAQAGLVVGEYAPNAVKKAVVGVGHAD 117

Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYH 157
           K QI  M+K+ +P     G DAADALAIA+CH+++
Sbjct: 118 KAQIAHMVKVQLPGVQLAGPDAADALAIAICHSFY 152


>gi|83592423|ref|YP_426175.1| Holliday junction resolvase [Rhodospirillum rubrum ATCC 11170]
 gi|123739582|sp|Q2RVF7|RUVC_RHORT RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|83575337|gb|ABC21888.1| Crossover junction endodeoxyribonuclease RuvC [Rhodospirillum
           rubrum ATCC 11170]
          Length = 169

 Score =  147 bits (371), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 77/153 (50%), Positives = 112/153 (73%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++G+DPGLR TGWG+++V G+ +  V+ G + S  R SLA RL QL+ G+  V+K + 
Sbjct: 1   MRLLGLDPGLRITGWGVIEVTGNRIGHVADGVVRSDDRLSLAARLAQLHGGIVAVLKAYE 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P EAAVE+ FVN++  +TLKLGQAR   +L+PALA + V+EY P+ +KKAV+G G   K 
Sbjct: 61  PVEAAVEETFVNRNPASTLKLGQARGAVMLAPALAGLVVAEYQPSVVKKAVVGTGGAAKD 120

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYH 157
           Q+ MM++ L+P +  +  DAADALAIA+CHA++
Sbjct: 121 QVGMMIRTLLPGATLETADAADALAIAICHAHY 153


>gi|126732348|ref|ZP_01748148.1| Holliday junction resolvase [Sagittula stellata E-37]
 gi|126707217|gb|EBA06283.1| Holliday junction resolvase [Sagittula stellata E-37]
          Length = 162

 Score =  147 bits (370), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 83/161 (51%), Positives = 110/161 (68%), Gaps = 1/161 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPGLR  GWG+++V G  L  V++G I       LA RL  L++ LT V + + 
Sbjct: 1   MRVLGIDPGLRHLGWGVIEVDGSRLRHVANG-ICDSEGTDLALRLLSLHDQLTRVFEAYA 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+EAA+E+ FVNKDAV TLKLGQAR +A+L PA   + + EYAPN +KK V+GVGH DK 
Sbjct: 60  PDEAAIEKTFVNKDAVGTLKLGQARGVALLVPAQFGLSIGEYAPNQVKKTVVGVGHADKN 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
           QI  M+KM +P     G DAADALAIA+CHA+ +     K+
Sbjct: 120 QILHMVKMQLPGCQPVGPDAADALAIAICHAHQSGVQRMKV 160


>gi|99082213|ref|YP_614367.1| Holliday junction resolvase [Ruegeria sp. TM1040]
 gi|99038493|gb|ABF65105.1| crossover junction endodeoxyribonuclease RuvC [Ruegeria sp. TM1040]
          Length = 188

 Score =  146 bits (369), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 78/162 (48%), Positives = 111/162 (68%), Gaps = 1/162 (0%)

Query: 4   SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
            +RI+GIDPGLR  GWG+++  G  L  V++G +       L  RL  L+  +T++I  +
Sbjct: 23  GMRILGIDPGLRTLGWGVIESNGARLSHVANG-LCHSDGDDLGERLLSLHNQVTEIIDAY 81

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RP++AA+EQ FVNKD   TLKLGQAR +A+L+ A A +P  EYAPN +KK V+GVGH +K
Sbjct: 82  RPDQAAIEQTFVNKDGAGTLKLGQARGVALLTLAKAGLPTGEYAPNRVKKTVVGVGHAEK 141

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
           +Q+  M+K+ +P    +G DAADALAIA+CHAY+  S   ++
Sbjct: 142 EQVLHMVKLQLPGCAPRGADAADALAIAICHAYYGGSNQRQL 183


>gi|126725531|ref|ZP_01741373.1| Holliday junction resolvase [Rhodobacterales bacterium HTCC2150]
 gi|126704735|gb|EBA03826.1| Holliday junction resolvase [Rhodobacterales bacterium HTCC2150]
          Length = 164

 Score =  146 bits (368), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 79/156 (50%), Positives = 108/156 (69%), Gaps = 1/156 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPGL   GWG++DV G  L  V++G   + V   L  RL  L++ L+ V++ + 
Sbjct: 1   MRVLGIDPGLGNLGWGVIDVDGSRLSHVANGVCKTKV-GDLGPRLLSLFDQLSAVVEKYA 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ AAVEQ FVNKD   +LKLGQAR IA+L PA A + + EYAPN +KK V+GVGH DKK
Sbjct: 60  PDTAAVEQTFVNKDGAGSLKLGQARGIAVLVPARAGLEIGEYAPNKVKKTVVGVGHADKK 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           Q+  M+K+ +P     G DAADALAIA+CHA++  +
Sbjct: 120 QVQHMVKIQLPGVELTGPDAADALAIAICHAHYGQN 155


>gi|89053455|ref|YP_508906.1| Holliday junction resolvase [Jannaschia sp. CCS1]
 gi|88863004|gb|ABD53881.1| crossover junction endodeoxyribonuclease RuvC [Jannaschia sp. CCS1]
          Length = 191

 Score =  146 bits (368), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 80/156 (51%), Positives = 107/156 (68%), Gaps = 1/156 (0%)

Query: 2   RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           R  +RIIGIDPGLR  GWG+++ +G  L  V++G   +  R  +  RL  L+  L+ ++ 
Sbjct: 22  RAVMRIIGIDPGLRSLGWGVIEASGGRLSHVANGQCKTEGR-DVPLRLLSLHTQLSAIVA 80

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
            + P+ AAVEQ FVN+D   TLKLGQAR IA+L PA A + V EYAPN +KKAV+GVGH 
Sbjct: 81  RYAPDAAAVEQTFVNRDGAGTLKLGQARGIAVLVPAQAGLDVGEYAPNAVKKAVVGVGHA 140

Query: 122 DKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYH 157
           DK Q+  M+K+ +P     G DAADALAIA+CH++H
Sbjct: 141 DKTQVEHMVKLQLPGCAPVGPDAADALAIAICHSFH 176


>gi|326386111|ref|ZP_08207735.1| crossover junction endodeoxyribonuclease RuvC [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326209336|gb|EGD60129.1| crossover junction endodeoxyribonuclease RuvC [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 158

 Score =  146 bits (368), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 74/149 (49%), Positives = 102/149 (68%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+G+DPGL  TGWGI+  AG  L  V++G I +   +++A RL +L   LTDVI   RP+
Sbjct: 3   ILGVDPGLTCTGWGIIAKAGSRLSHVANGQIRTDASRTMAERLVELDTTLTDVILAHRPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             AVE+VFVN +  +TLKLG AR +A++S A A +PV+EY    IKKA++G G   K+Q+
Sbjct: 63  AGAVEEVFVNVNPQSTLKLGHARGVALVSLARAGMPVAEYPTKVIKKALVGTGGAQKQQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHA 155
             MLK+L+P     G+DAADALA+A+ HA
Sbjct: 123 QAMLKVLLPGIRLAGEDAADALAVAITHA 151


>gi|39996177|ref|NP_952128.1| Holliday junction resolvase [Geobacter sulfurreducens PCA]
 gi|81702837|sp|Q74E88|RUVC_GEOSL RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|39982942|gb|AAR34401.1| crossover junction endodeoxyribonuclease RuvC [Geobacter
           sulfurreducens PCA]
 gi|298505191|gb|ADI83914.1| crossover junction endodeoxyribonuclease RuvC [Geobacter
           sulfurreducens KN400]
          Length = 164

 Score =  145 bits (367), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 71/151 (47%), Positives = 102/151 (67%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPG R TG+GI++  G+ L  V +G I +   +  A RL ++YEGL+ VI+ +R
Sbjct: 1   MRVLGIDPGSRITGYGIIEKIGNRLVHVDNGAIHTDSHREFALRLHKIYEGLSRVIEEYR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  AVEQVF+  +A + LKLGQAR  AI++   A +PVSEY    +K+AV+G GH  K+
Sbjct: 61  PDAMAVEQVFLAHNAQSALKLGQARGAAIVAGVSAGLPVSEYTAMQVKQAVVGYGHARKE 120

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHA 155
           Q+  M+K L+        DA+DALA+AVCHA
Sbjct: 121 QVQQMVKSLLNLPEIAQADASDALAVAVCHA 151


>gi|110679368|ref|YP_682375.1| Holliday junction resolvase [Roseobacter denitrificans OCh 114]
 gi|109455484|gb|ABG31689.1| crossover junction endodeoxyribonuclease RuvC [Roseobacter
           denitrificans OCh 114]
          Length = 187

 Score =  145 bits (367), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 81/148 (54%), Positives = 105/148 (70%), Gaps = 1/148 (0%)

Query: 6   RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           R+IGIDPGLR  GWG+++V+G  +  +++G  VS     LA RL  L++ LT V+  + P
Sbjct: 22  RVIGIDPGLRNLGWGVIEVSGSRIAHIANGVCVSG-GSDLADRLLSLHQQLTAVVSTFAP 80

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
           +EAAVEQ FVNKD   TLKLGQAR IA+L PA A + V EYAPN IKK V+GVGH DK Q
Sbjct: 81  DEAAVEQTFVNKDGAGTLKLGQARGIAMLVPAQAGLRVGEYAPNKIKKTVVGVGHADKAQ 140

Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVC 153
           +  M+++ +P +  K  DAADALAIA+C
Sbjct: 141 VLHMVRLQLPGAEIKSPDAADALAIAIC 168


>gi|163733513|ref|ZP_02140956.1| crossover junction endodeoxyribonuclease RuvC [Roseobacter
           litoralis Och 149]
 gi|161393301|gb|EDQ17627.1| crossover junction endodeoxyribonuclease RuvC [Roseobacter
           litoralis Och 149]
          Length = 168

 Score =  145 bits (366), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 82/148 (55%), Positives = 106/148 (71%), Gaps = 1/148 (0%)

Query: 6   RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           R+IGIDPGLR  GWG+++++G  +  V++G  VS V   L+ RL  L+E LT V+  + P
Sbjct: 3   RVIGIDPGLRNLGWGVIELSGSRIAHVANGVCVS-VGTELSDRLLSLHEQLTAVVLKFAP 61

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
           +EAAVEQ FVNKD   TLKLGQAR IA+L PA A + V EYAPN IKK V+GVGH DK Q
Sbjct: 62  DEAAVEQTFVNKDGAGTLKLGQARGIAMLVPAQAGLRVGEYAPNKIKKTVVGVGHADKGQ 121

Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVC 153
           +  M+++ +P +  K  DAADALAIA+C
Sbjct: 122 VLHMVRLQLPGAEIKSPDAADALAIAIC 149


>gi|254465647|ref|ZP_05079058.1| crossover junction endodeoxyribonuclease RuvC [Rhodobacterales
           bacterium Y4I]
 gi|206686555|gb|EDZ47037.1| crossover junction endodeoxyribonuclease RuvC [Rhodobacterales
           bacterium Y4I]
          Length = 165

 Score =  145 bits (366), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 77/153 (50%), Positives = 109/153 (71%), Gaps = 1/153 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGLR  GWG+++  G  L  V++G + +     L  RL  L+  +T++I+ + 
Sbjct: 1   MRILGIDPGLRNLGWGVIESRGTRLSHVANG-VCTSDGDDLGERLLSLHNQVTEIIEAFA 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P++AA+EQ FVNKD   TLKLGQAR +A+L+ A A +PV EYAPN +KK V+GVGH +K+
Sbjct: 60  PDQAAIEQTFVNKDGAGTLKLGQARGVALLTLAKAGLPVGEYAPNRVKKTVVGVGHAEKE 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYH 157
           Q+  M+K+ +P    K  DAADALAIA+CHAY+
Sbjct: 120 QVMHMVKLQLPGCLPKNTDAADALAIAICHAYY 152


>gi|238026247|ref|YP_002910478.1| Holliday junction resolvase [Burkholderia glumae BGR1]
 gi|237875441|gb|ACR27774.1| Crossover junction endodeoxyribonuclease RuvC [Burkholderia glumae
           BGR1]
          Length = 180

 Score =  145 bits (365), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 68/152 (44%), Positives = 103/152 (67%), Gaps = 1/152 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RIIGIDPGLR TG+G++DV G  L +V+SG ++      LA RL  +++G++ +++ +R
Sbjct: 1   MRIIGIDPGLRVTGFGVIDVHGSKLAYVTSG-VIRTPSADLAVRLGTIFDGVSTLVREYR 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P++AA+E+VFVN +  +TL LGQAR  AI       +PV+EY P  +K+A++G G   K+
Sbjct: 60  PDQAAIEKVFVNVNPQSTLLLGQARGAAICGLVSGSLPVAEYTPTQLKQAIVGYGRATKE 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
           Q+  M+  L+  S   G DAADAL  A+CHA+
Sbjct: 120 QMQQMVVRLLGLSGLPGTDAADALGTAICHAH 151


>gi|259417391|ref|ZP_05741310.1| crossover junction endodeoxyribonuclease RuvC [Silicibacter sp.
           TrichCH4B]
 gi|259346297|gb|EEW58111.1| crossover junction endodeoxyribonuclease RuvC [Silicibacter sp.
           TrichCH4B]
          Length = 188

 Score =  144 bits (364), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 77/162 (47%), Positives = 111/162 (68%), Gaps = 1/162 (0%)

Query: 4   SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
            +RI+GIDPGLR  GWG+++  G  L  V++G +       L  RL  L+  +T++I  +
Sbjct: 23  EMRILGIDPGLRTLGWGVIESNGARLSHVANG-LCHSDGDDLGERLLSLHNQVTEIIDAY 81

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +P++AA+EQ FVNKD   TLKLGQAR +A+L+ A A +P  EYAPN +KK V+GVGH +K
Sbjct: 82  QPDQAAIEQTFVNKDGAGTLKLGQARGVALLTLAKAGLPTGEYAPNRVKKTVVGVGHAEK 141

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
           +Q+  M+K+ +P    +G DAADALAIA+CHAY+  S   ++
Sbjct: 142 EQVLHMVKLQLPGCAPRGADAADALAIAICHAYYGGSNQRRL 183


>gi|126737217|ref|ZP_01752952.1| Holliday junction resolvase [Roseobacter sp. SK209-2-6]
 gi|126721802|gb|EBA18505.1| Holliday junction resolvase [Roseobacter sp. SK209-2-6]
          Length = 165

 Score =  144 bits (364), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 76/156 (48%), Positives = 110/156 (70%), Gaps = 1/156 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGLR  GWG+++  G  L  V++G +       L  RL  L+  ++++I+ ++
Sbjct: 1   MRILGIDPGLRTLGWGVIESQGSRLSHVANG-LCHSDGDDLGERLLSLHNQVSEIIEAYQ 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P++AA+EQ FVNKD   TLKLGQAR +A+L+ A A +P  EYAPN +KK V+GVGH +K+
Sbjct: 60  PDQAAIEQTFVNKDGAGTLKLGQARGVALLTLAKAGLPTGEYAPNRVKKTVVGVGHAEKE 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           Q+  M+K+ +P    KG DAADALAIA+CHAY+  +
Sbjct: 120 QVLHMVKLQLPGCDPKGADAADALAIAICHAYYGGT 155


>gi|114327762|ref|YP_744919.1| Holliday junction resolvase [Granulibacter bethesdensis CGDNIH1]
 gi|122327272|sp|Q0BT56|RUVC_GRABC RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|114315936|gb|ABI61996.1| crossover junction endodeoxyribonuclease ruvC [Granulibacter
           bethesdensis CGDNIH1]
          Length = 178

 Score =  144 bits (363), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 72/157 (45%), Positives = 110/157 (70%)

Query: 4   SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           ++R++GIDPGLR TGWG+++  G+ L  ++ G I +   +S+  RL  L++ LT ++  +
Sbjct: 11  TVRMLGIDPGLRFTGWGVIEATGNRLRHIADGVIATDSTESVPARLRVLHDTLTSLLVTY 70

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P+EAAVE+ +VN++  ATLKLG AR +A+L+PAL  +PV+EY    +K AV+G G   K
Sbjct: 71  HPDEAAVEETYVNRNGTATLKLGYARGVALLAPALRNVPVAEYGAKAVKLAVVGTGGATK 130

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
            Q+ MM++ L+P +  K  DAADALA+A+CHA+H  S
Sbjct: 131 DQVQMMVQRLLPGATLKRADAADALAVAICHAHHRAS 167


>gi|332188823|ref|ZP_08390532.1| crossover junction endodeoxyribonuclease RuvC [Sphingomonas sp.
           S17]
 gi|332011133|gb|EGI53229.1| crossover junction endodeoxyribonuclease RuvC [Sphingomonas sp.
           S17]
          Length = 172

 Score =  144 bits (363), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 72/154 (46%), Positives = 99/154 (64%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+G+DPGL  TGWG++   G+ L  V++G I +     L  RL  L+  L DVI+  +P+
Sbjct: 8   ILGLDPGLGTTGWGVIAAEGNRLRHVANGQIKTEPSMPLPRRLANLHAALYDVIRQQQPD 67

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
            AAVE+V  N +A +TLKLGQAR I +L+ A A + V EY P+ +KKA +G G  DKKQ+
Sbjct: 68  GAAVEEVLGNSNAQSTLKLGQARGIVLLAAAQAGLIVGEYHPSIVKKATVGTGGADKKQV 127

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
             M+  L+P     G DAADALA+A+ HA+H  S
Sbjct: 128 QAMVGHLLPGVKLTGPDAADALAVAITHAHHLAS 161


>gi|254476073|ref|ZP_05089459.1| crossover junction endodeoxyribonuclease RuvC [Ruegeria sp. R11]
 gi|214030316|gb|EEB71151.1| crossover junction endodeoxyribonuclease RuvC [Ruegeria sp. R11]
          Length = 165

 Score =  144 bits (362), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 77/156 (49%), Positives = 109/156 (69%), Gaps = 1/156 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGLR  GWG+++  G  L  V++G + +     L  RL  L+  + +VI+ +R
Sbjct: 1   MRILGIDPGLRNLGWGVIESRGTRLSHVANG-VCTSDGDDLGERLLSLHNQVIEVIEAYR 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P++AA+EQ FVNKD   TLKLGQAR +A+++ A A +PV EYAPN +KK V+GVGH  K+
Sbjct: 60  PDQAAIEQTFVNKDGAGTLKLGQARGVALMTLAQAGLPVGEYAPNRVKKTVVGVGHAAKE 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           QI  M+K+ +P    K  DAADALAIA+CHA++  +
Sbjct: 120 QILHMVKLQLPGCLPKNADAADALAIAICHAFYGGT 155


>gi|95931132|ref|ZP_01313857.1| crossover junction endodeoxyribonuclease RuvC [Desulfuromonas
           acetoxidans DSM 684]
 gi|95132822|gb|EAT14496.1| crossover junction endodeoxyribonuclease RuvC [Desulfuromonas
           acetoxidans DSM 684]
          Length = 175

 Score =  143 bits (361), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 71/155 (45%), Positives = 105/155 (67%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPG R TG+GI+D  G+ L  V +G I +    +L  RL ++++GL ++I  +R
Sbjct: 1   MRILGIDPGTRITGYGIIDQQGNRLRHVDNGAIYTQSSDALPKRLKKIHDGLCEIILQYR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  A+EQVFV K+A++ LKLGQAR  AI++   A +PVSEY+   +K AV+G G   K 
Sbjct: 61  PDAVAIEQVFVAKNALSALKLGQARGAAIVAGVNADLPVSEYSALQVKSAVVGYGKAAKS 120

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHAN 159
           Q+  M+K LM       +DA+DALA+A+CHA+ A+
Sbjct: 121 QVQQMVKALMNLPEVAQEDASDALAVAICHAHSAH 155


>gi|87198446|ref|YP_495703.1| crossover junction endodeoxyribonuclease RuvC [Novosphingobium
           aromaticivorans DSM 12444]
 gi|123763648|sp|Q2GBA4|RUVC_NOVAD RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|87134127|gb|ABD24869.1| crossover junction endodeoxyribonuclease RuvC [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 158

 Score =  143 bits (361), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 71/149 (47%), Positives = 103/149 (69%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPGL  TGWG+V  +G  L  V++G I +  + ++A RL +L   L  VI  ++P+
Sbjct: 3   ILGIDPGLTVTGWGVVAKSGSRLSHVANGQIRTDNKATMAERLVELDSALAAVIDIYKPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             AVE+VFVN +  +TLKLGQAR +A+++ A + IPV+EY    IKKA++G G  +K+QI
Sbjct: 63  TGAVEEVFVNVNPQSTLKLGQARGVAMVAVARSGIPVAEYPTKVIKKALVGTGGAEKQQI 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHA 155
             MLK+L+P     G+DA+DALA+A+ HA
Sbjct: 123 QHMLKILLPGVQLAGEDASDALAVAITHA 151


>gi|330991871|ref|ZP_08315820.1| Crossover junction endodeoxyribonuclease ruvC [Gluconacetobacter
           sp. SXCC-1]
 gi|329760892|gb|EGG77387.1| Crossover junction endodeoxyribonuclease ruvC [Gluconacetobacter
           sp. SXCC-1]
          Length = 168

 Score =  143 bits (361), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 72/156 (46%), Positives = 107/156 (68%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGLR TGWG++   G+ L  V+ G I +     +  RL  L++ L ++ +N+ 
Sbjct: 2   VRILGIDPGLRFTGWGVITAQGNRLTHVADGVIATDSALGVPERLRHLHDALLELARNFA 61

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+EAAVE+ +VN++  ATLKLG AR + +L P L  IPV+EY   T+K+AV+G G   K+
Sbjct: 62  PDEAAVEETYVNRNGSATLKLGYARGVGLLVPMLLDIPVAEYGAKTVKRAVVGTGAATKE 121

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           Q+ MM++ ++P +  K  DAADALA+A+CHA+H  S
Sbjct: 122 QVSMMVRRILPTALLKRADAADALAVAICHAHHRTS 157


>gi|163738341|ref|ZP_02145756.1| Holliday junction resolvase [Phaeobacter gallaeciensis BS107]
 gi|161388262|gb|EDQ12616.1| Holliday junction resolvase [Phaeobacter gallaeciensis BS107]
          Length = 165

 Score =  143 bits (360), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 78/156 (50%), Positives = 107/156 (68%), Gaps = 1/156 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGLR  GWG+++  G  L  V++G   S     L  RL  L+  + +VI  +R
Sbjct: 1   MRILGIDPGLRNLGWGVIESRGTRLSHVANGVCTS-DGDDLGERLLSLHNQVVEVIAAYR 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P++AA+EQ FVNKD   TLKLGQAR +A+++ A A +PV EYAPN +KK V+GVGH  K+
Sbjct: 60  PDQAAIEQTFVNKDGAGTLKLGQARGVALMTLAQAGLPVGEYAPNRVKKTVVGVGHAAKE 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           QI  M+K+ +P    K  DAADALAIA+CHA++  +
Sbjct: 120 QILHMVKLQLPGCLPKNADAADALAIAICHAFYGGT 155


>gi|163742242|ref|ZP_02149630.1| Holliday junction resolvase [Phaeobacter gallaeciensis 2.10]
 gi|161384572|gb|EDQ08953.1| Holliday junction resolvase [Phaeobacter gallaeciensis 2.10]
          Length = 165

 Score =  143 bits (360), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 78/156 (50%), Positives = 107/156 (68%), Gaps = 1/156 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGLR  GWG+++  G  L  V++G   S     L  RL  L+  + +VI  +R
Sbjct: 1   MRILGIDPGLRNLGWGVIESHGTRLSHVANGVCTS-DGDDLGERLLSLHNQVIEVIAAYR 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P++AA+EQ FVNKD   TLKLGQAR +A+++ A A +PV EYAPN +KK V+GVGH  K+
Sbjct: 60  PDQAAIEQTFVNKDGAGTLKLGQARGVALMTLAQAGLPVGEYAPNRVKKTVVGVGHAAKE 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           QI  M+K+ +P    K  DAADALAIA+CHA++  +
Sbjct: 120 QILHMVKLQLPGCLPKNADAADALAIAICHAFYGGT 155


>gi|78221964|ref|YP_383711.1| Holliday junction resolvase [Geobacter metallireducens GS-15]
 gi|123742916|sp|Q39XN8|RUVC_GEOMG RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|78193219|gb|ABB30986.1| Holliday junction endonuclease RuvC [Geobacter metallireducens
           GS-15]
          Length = 164

 Score =  142 bits (359), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 71/154 (46%), Positives = 102/154 (66%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPG R TG+GI++  G+ L  V +G I +   +  A RL +++EGL +VI  +R
Sbjct: 1   MRVLGIDPGSRITGYGIIEKVGNRLVHVDNGAIHTDNHKEFALRLHRIFEGLCEVIAEYR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  AVEQVF+  +A + LKLGQAR  AI++   A +PVSEY    +K+AV+G GH  K+
Sbjct: 61  PDAMAVEQVFLAHNAQSALKLGQARGAAIVAGVNAGLPVSEYTAMQVKQAVVGYGHARKE 120

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHA 158
           Q+  M+K L+        DA+DALA+AVCHA  A
Sbjct: 121 QVQQMVKSLLNLPEIAQADASDALAVAVCHANSA 154


>gi|83312318|ref|YP_422582.1| Holliday junction resolvase [Magnetospirillum magneticum AMB-1]
 gi|123740436|sp|Q2W2A2|RUVC_MAGMM RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|82947159|dbj|BAE52023.1| Holliday junction resolvasome, endonuclease subunit
           [Magnetospirillum magneticum AMB-1]
          Length = 166

 Score =  142 bits (359), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 75/153 (49%), Positives = 106/153 (69%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+G+DPGLR TGWGI+D   + L  V+ G I      +LA RL QL++G+  VI ++ 
Sbjct: 1   MRILGLDPGLRNTGWGIIDAVDNRLRHVADGVIRPDASAALAERLVQLHDGIMAVIADFS 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+EAAVE+ FVN +  +TLKLGQAR + +L PA + +PV EYA   +K++V+G G   K+
Sbjct: 61  PDEAAVEETFVNMNPASTLKLGQARGVVLLVPAKSGLPVGEYAATLVKQSVVGTGRAAKE 120

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYH 157
           Q+ MM+K L+P       DAADALA+A+CHA+H
Sbjct: 121 QVGMMVKTLLPGCLAATADAADALAVAICHAHH 153


>gi|254510078|ref|ZP_05122145.1| crossover junction endodeoxyribonuclease RuvC [Rhodobacteraceae
           bacterium KLH11]
 gi|221533789|gb|EEE36777.1| crossover junction endodeoxyribonuclease RuvC [Rhodobacteraceae
           bacterium KLH11]
          Length = 165

 Score =  142 bits (359), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 77/154 (50%), Positives = 108/154 (70%), Gaps = 1/154 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGLR  GWG+++  G  L  V++G +       L  RL  L+  + +VI+  +
Sbjct: 1   MRILGIDPGLRTLGWGVIESYGSRLSHVANG-LCKSDGDDLGERLLSLHNQIVEVIEEHQ 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P++AA+EQ FVNKD   TLKLGQAR +A+L+ A A +PV EYAPN +KK V+GVGH +K+
Sbjct: 60  PDQAAIEQTFVNKDGAGTLKLGQARGVALLTLAQAGLPVGEYAPNRVKKTVVGVGHAEKE 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHA 158
           Q+  M+K+ +P    KG DAADALAIA+CH+Y+ 
Sbjct: 120 QVLHMVKLQLPGCQPKGADAADALAIAICHSYYG 153


>gi|163796367|ref|ZP_02190328.1| Holliday junction resolvasome, endonuclease subunit [alpha
           proteobacterium BAL199]
 gi|159178509|gb|EDP63051.1| Holliday junction resolvasome, endonuclease subunit [alpha
           proteobacterium BAL199]
          Length = 198

 Score =  142 bits (358), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 78/162 (48%), Positives = 113/162 (69%), Gaps = 1/162 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R+IG+DPGLR TGWG++++ G  L  ++ GT+ S     +A RL QLY+G+ ++I+ W 
Sbjct: 1   MRLIGLDPGLRNTGWGVIEMDGHALRHIADGTVHSDGDAPIATRLVQLYDGVLELIERWN 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P EAAVE+ FVN++  +TLKLG AR + +L+PA A + VSEYAP  +KK+V+G G   K+
Sbjct: 61  PSEAAVEETFVNRNPESTLKLGLARGVVLLAPAKAGLLVSEYAPKRVKKSVVGTGSASKE 120

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS-GYYKI 165
           Q+  M+  L+P +   G DAADALA+AVCHA+   + G Y I
Sbjct: 121 QVQAMIATLLPGARIAGADAADALAVAVCHAHFIQARGAYGI 162


>gi|94496898|ref|ZP_01303472.1| Holliday junction resolvasome endonuclease subunit [Sphingomonas
           sp. SKA58]
 gi|94423574|gb|EAT08601.1| Holliday junction resolvasome endonuclease subunit [Sphingomonas
           sp. SKA58]
          Length = 163

 Score =  142 bits (358), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 68/154 (44%), Positives = 103/154 (66%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           ++G+DPGL  TGWG++   G+ L  + +G I +    +LA RL  +   LTD+I   RP+
Sbjct: 3   LLGLDPGLGTTGWGLIAADGNRLTHIGNGQIKTDAGMALATRLLAIDLALTDLILEHRPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
            AAVE+VFVN +  +TLKLGQAR + +L+ + + + V EYA   +KK+V+GVG+  K Q+
Sbjct: 63  GAAVEEVFVNVNPQSTLKLGQARGVVLLAASRSGMEVGEYAARLVKKSVVGVGNASKDQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           H M++ ++P +   G DAADALA+A+ HA+H  S
Sbjct: 123 HAMVQRMLPGARIAGPDAADALAVAITHAHHLAS 156


>gi|260431116|ref|ZP_05785087.1| crossover junction endodeoxyribonuclease RuvC [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260414944|gb|EEX08203.1| crossover junction endodeoxyribonuclease RuvC [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 165

 Score =  142 bits (358), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 78/161 (48%), Positives = 110/161 (68%), Gaps = 1/161 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGLR  GWG+++  G  L  V++G +       L  RL  L+  + +VI   +
Sbjct: 1   MRILGIDPGLRTLGWGVIESHGSRLSHVANG-LCKSDGDDLGERLLSLHNQIVEVIAEHQ 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P++AA+EQ FVNKD   TLKLGQAR +A+L+ A A +PV EYAPN +KK V+GVGH +K+
Sbjct: 60  PDQAAIEQTFVNKDGAGTLKLGQARGVALLTLAQAGLPVGEYAPNRVKKTVVGVGHAEKE 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
           Q+  M+K+ +P    KG DAADALAIA+CHA++  +   +I
Sbjct: 120 QVLHMVKLQLPGCQPKGADAADALAIAICHAFYGATPQARI 160


>gi|241761372|ref|ZP_04759460.1| crossover junction endodeoxyribonuclease RuvC [Zymomonas mobilis
           subsp. mobilis ATCC 10988]
 gi|241374279|gb|EER63776.1| crossover junction endodeoxyribonuclease RuvC [Zymomonas mobilis
           subsp. mobilis ATCC 10988]
          Length = 169

 Score =  142 bits (357), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 77/160 (48%), Positives = 104/160 (65%), Gaps = 2/160 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
            +G+DPGL  TGWG + V G+ L  +++G I +    +LA RL  L++ L  VI + +PE
Sbjct: 5   FLGLDPGLGTTGWGAITVEGNRLSHIANGQIRTGPSMALARRLALLHDALAAVIASHQPE 64

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
            AAVE+V  N +A +TLKLGQAR IA+ S A A + V EY PN +KKAV+G G  DKKQ+
Sbjct: 65  MAAVEEVLGNSNAQSTLKLGQARGIALFSLAEAGLSVGEYHPNVVKKAVVGTGSADKKQV 124

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS--GYYK 164
             M+  L+P     G DAADALA+A+ HA+H  S  GY +
Sbjct: 125 QAMVSRLLPGVKLAGPDAADALAVAITHAHHHASARGYAR 164


>gi|56551050|ref|YP_161889.1| Holliday junction resolvase [Zymomonas mobilis subsp. mobilis ZM4]
 gi|81598352|sp|Q5NR76|RUVC_ZYMMO RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|56542624|gb|AAV88778.1| crossover junction endodeoxyribonuclease RuvC [Zymomonas mobilis
           subsp. mobilis ZM4]
          Length = 167

 Score =  141 bits (356), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 77/160 (48%), Positives = 104/160 (65%), Gaps = 2/160 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
            +G+DPGL  TGWG + V G+ L  +++G I +    +LA RL  L++ L  VI + +PE
Sbjct: 3   FLGLDPGLGTTGWGAITVEGNRLSHIANGQIRTDPSMALARRLALLHDALAAVIASHQPE 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
            AAVE+V  N +A +TLKLGQAR IA+ S A A + V EY PN +KKAV+G G  DKKQ+
Sbjct: 63  MAAVEEVLGNSNAQSTLKLGQARGIALFSLAEAGLSVGEYHPNVVKKAVVGTGSADKKQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS--GYYK 164
             M+  L+P     G DAADALA+A+ HA+H  S  GY +
Sbjct: 123 QAMVSRLLPGVKLAGPDAADALAVAITHAHHHASARGYAR 162


>gi|260753287|ref|YP_003226180.1| Holliday junction resolvase [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
 gi|258552650|gb|ACV75596.1| crossover junction endodeoxyribonuclease RuvC [Zymomonas mobilis
           subsp. mobilis NCIMB 11163]
          Length = 169

 Score =  141 bits (355), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 77/160 (48%), Positives = 104/160 (65%), Gaps = 2/160 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
            +G+DPGL  TGWG + V G+ L  +++G I +    +LA RL  L++ L  VI + +PE
Sbjct: 5   FLGLDPGLGTTGWGAITVEGNRLSHIANGQIRTDPSMALARRLALLHDALAAVIASHQPE 64

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
            AAVE+V  N +A +TLKLGQAR IA+ S A A + V EY PN +KKAV+G G  DKKQ+
Sbjct: 65  MAAVEEVLGNSNAQSTLKLGQARGIALFSLAEAGLSVGEYHPNVVKKAVVGTGSADKKQV 124

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS--GYYK 164
             M+  L+P     G DAADALA+A+ HA+H  S  GY +
Sbjct: 125 QAMVSRLLPGVKLAGPDAADALAVAITHAHHHASARGYAR 164


>gi|149915609|ref|ZP_01904135.1| Holliday junction resolvase [Roseobacter sp. AzwK-3b]
 gi|149810501|gb|EDM70344.1| Holliday junction resolvase [Roseobacter sp. AzwK-3b]
          Length = 161

 Score =  140 bits (354), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 81/151 (53%), Positives = 103/151 (68%), Gaps = 1/151 (0%)

Query: 8   IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEE 67
           +GIDPGLR  GWG++DV G  L  V++G I       +A RL  L+  LT++ + + P+ 
Sbjct: 1   MGIDPGLRNLGWGVIDVDGSRLSHVANG-ICKSSGTDMAARLMSLHVQLTEIFRQFAPQT 59

Query: 68  AAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIH 127
           AAVEQ FVNKD   TLKLGQAR IA+L PA   + V EYAPNT+KK V+GVGH  K QI 
Sbjct: 60  AAVEQTFVNKDGAGTLKLGQARGIALLVPAQFGLAVGEYAPNTVKKTVVGVGHATKDQIA 119

Query: 128 MMLKMLMPESFFKGKDAADALAIAVCHAYHA 158
            M+++ +P     G DAADALAIA+CHA+HA
Sbjct: 120 HMVRVQLPGITLAGADAADALAIAICHAHHA 150


>gi|145590057|ref|YP_001156654.1| crossover junction endodeoxyribonuclease RuvC [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
 gi|189046072|sp|A4T026|RUVC_POLSQ RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|145048463|gb|ABP35090.1| crossover junction endodeoxyribonuclease RuvC [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
          Length = 172

 Score =  140 bits (354), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 70/156 (44%), Positives = 105/156 (67%), Gaps = 1/156 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSC-VRQSLAFRLCQLYEGLTDVIKNW 63
           +R IGIDPGLR TG+G++DV G  L +V+SGTI S    + L  RL  LY G+ +V++ +
Sbjct: 1   MRWIGIDPGLRITGFGVIDVDGQKLTYVASGTIESGDPAKGLPERLGALYAGVKEVLETY 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RPE+AA+E+VF+N +  +TL LGQAR   I +    ++PV+EY+   +K+A++G G   K
Sbjct: 61  RPEQAAIEEVFLNVNPRSTLMLGQARGAVIAALVSEKLPVAEYSALRVKQAIVGTGRAAK 120

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHAN 159
            Q+  M+K L+  S   G DA+DAL +A+C A+H+ 
Sbjct: 121 PQVQEMVKRLLRLSRAPGTDASDALGVAICAAHHSQ 156


>gi|295688116|ref|YP_003591809.1| crossover junction endodeoxyribonuclease RuvC [Caulobacter segnis
           ATCC 21756]
 gi|295430019|gb|ADG09191.1| crossover junction endodeoxyribonuclease RuvC [Caulobacter segnis
           ATCC 21756]
          Length = 169

 Score =  140 bits (353), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 76/154 (49%), Positives = 105/154 (68%)

Query: 2   RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           R  IRI+G+DPGLRRTGWG++ + G  +  V+ G I    +   A RL  L+EG+  VI+
Sbjct: 6   RSPIRILGLDPGLRRTGWGVLTIDGARMSHVAHGVIAPDEKADFAQRLLHLFEGICAVIE 65

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
             RP+EAAVE+VF+N +A +TLKLG ARA A+++PA A +PV+EY+   +KKAV+G G  
Sbjct: 66  QHRPDEAAVEEVFLNTNAQSTLKLGHARAAALIAPARAGLPVAEYSTRLVKKAVVGTGAA 125

Query: 122 DKKQIHMMLKMLMPESFFKGKDAADALAIAVCHA 155
           DK QI  M+  L+P +     D ADALA+A+ HA
Sbjct: 126 DKAQIGFMIARLLPTAGKTTADCADALAVAITHA 159


>gi|330815561|ref|YP_004359266.1| Crossover junction endodeoxyribonuclease RuvC [Burkholderia
           gladioli BSR3]
 gi|327367954|gb|AEA59310.1| Crossover junction endodeoxyribonuclease RuvC [Burkholderia
           gladioli BSR3]
          Length = 180

 Score =  140 bits (353), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 66/156 (42%), Positives = 104/156 (66%), Gaps = 1/156 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RIIGIDPGLR TG+G++DV G  L +V+SG ++      L+ RL  +++G++ +++ +R
Sbjct: 1   MRIIGIDPGLRVTGFGVIDVQGSRLAYVTSG-VIRTPSAELSVRLGTIFDGVSTLVREYR 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+++A+E+VFVN +  +TL LGQAR  AI       + V+EY P  +K+AV+G G   K+
Sbjct: 60  PDQSAIEKVFVNVNPQSTLLLGQARGAAICGLVAGGMAVAEYTPTQLKQAVVGYGRATKE 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           Q+  M+  L+  S   G DAADAL +A+CHA   ++
Sbjct: 120 QMQQMVVRLLGLSGLPGTDAADALGMAICHANAGDA 155


>gi|167837834|ref|ZP_02464717.1| Holliday junction resolvase [Burkholderia thailandensis MSMB43]
          Length = 180

 Score =  140 bits (353), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 68/156 (43%), Positives = 104/156 (66%), Gaps = 1/156 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGLR TG+G++DV+G  L +V+SG ++      L  RL  +Y+G++ +I+   
Sbjct: 1   MRILGIDPGLRVTGFGVIDVSGHRLAYVASG-VIKTPTADLPTRLGTIYDGISTLIREHA 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P++AA+E+VFVN +  +TL LGQAR  AI      R+PV+EY    +K+AV+G G   K+
Sbjct: 60  PDQAAIEKVFVNVNPQSTLLLGQARGAAICGLVSGRLPVAEYTALQLKQAVVGYGRATKE 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           Q+  M+  L+  S   G DAADAL +A+CHA+  ++
Sbjct: 120 QMQEMVARLLSLSGLPGTDAADALGMAICHAHGGDT 155


>gi|83652274|gb|ABC36337.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
           thailandensis E264]
          Length = 312

 Score =  140 bits (353), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 71/160 (44%), Positives = 105/160 (65%), Gaps = 1/160 (0%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
            R S+RI+GIDPGLR TG+G++DV+G  L +V+SG I +     L  RL  +Y+G++ +I
Sbjct: 129 FRFSMRILGIDPGLRVTGFGVIDVSGHRLAYVASGVIKTPT-ADLPTRLGTIYDGVSTLI 187

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
           +   P++AA+E+VFVN +  +TL LGQAR  AI       +PV+EY    +K+AV+G G 
Sbjct: 188 REHTPDQAAIEKVFVNVNPQSTLLLGQARGAAICGLVSGGLPVAEYTALQLKQAVVGYGR 247

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
             K+Q+  M+  L+  S   G DAADAL +A+CHA+  N+
Sbjct: 248 ATKEQMQEMVARLLSLSGLPGTDAADALGMAICHAHGGNT 287


>gi|302879790|ref|YP_003848354.1| crossover junction endodeoxyribonuclease RuvC [Gallionella
           capsiferriformans ES-2]
 gi|302582579|gb|ADL56590.1| crossover junction endodeoxyribonuclease RuvC [Gallionella
           capsiferriformans ES-2]
          Length = 190

 Score =  140 bits (352), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 78/167 (46%), Positives = 107/167 (64%), Gaps = 2/167 (1%)

Query: 2   RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           R SIRI+GIDPGLR TG+G++D  G  L +V+SG I +     L  RL  +   L  VI 
Sbjct: 16  RASIRILGIDPGLRITGFGVIDKVGQQLHYVASGCIKTPA-GDLPERLKVILNSLGVVIT 74

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
             +P++AAVE+VFVN +  +TL LGQAR  AI +  LA +PV EY    +K+AV+G GH 
Sbjct: 75  QHQPDQAAVEKVFVNVNPQSTLLLGQARGAAICAAVLANLPVGEYTALQVKQAVVGNGHA 134

Query: 122 DKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
           DK+Q+ +M++ L+  S     DAADALA A+CHA H   G   +A++
Sbjct: 135 DKEQVQLMVQRLLKLSGTPSPDAADALACAICHA-HGGLGLGALATK 180


>gi|254179003|ref|ZP_04885657.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia mallei
           ATCC 10399]
 gi|160694917|gb|EDP84925.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia mallei
           ATCC 10399]
          Length = 209

 Score =  140 bits (352), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 70/160 (43%), Positives = 105/160 (65%), Gaps = 1/160 (0%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
            R S+RI+GIDPGLR TG+G++DV+G  L +V+SG ++      L  RL  +Y+G++ +I
Sbjct: 26  FRFSMRILGIDPGLRVTGFGVIDVSGHQLAYVASG-VIKTPTADLPTRLGTIYDGVSTLI 84

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
           +   P++AA+E+VFVN +  +TL LGQAR  AI       +PV+EY    +K+AV+G G 
Sbjct: 85  REHTPDQAAIEKVFVNVNPQSTLLLGQARGAAICGLVSGGLPVAEYTALQLKQAVVGYGR 144

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
             K+Q+  M+  L+  S   G DAADAL +A+CHA+  N+
Sbjct: 145 ATKEQMQEMVARLLSLSGRPGTDAADALGMAICHAHGGNT 184


>gi|294013343|ref|YP_003546803.1| crossover junction endodeoxyribonuclease [Sphingobium japonicum
           UT26S]
 gi|292676673|dbj|BAI98191.1| crossover junction endodeoxyribonuclease [Sphingobium japonicum
           UT26S]
          Length = 163

 Score =  139 bits (351), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 68/154 (44%), Positives = 103/154 (66%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+G+DPGL  TGWG++   G+ L  +++G I +    +LA RL  L   LTD+I   +P 
Sbjct: 3   ILGLDPGLGTTGWGLIAADGNRLTHIANGQIKTDSDMALASRLLVLDLALTDLILEHQPN 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
            AAVE+VF+N +  +TLKLGQAR + +L+ + + + V EYA   +KK+V+GVG+  K+Q+
Sbjct: 63  GAAVEEVFLNVNPQSTLKLGQARGVVLLAASRSGMEVGEYAARLVKKSVVGVGNASKEQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           H M+  L+P +   G DA+DALA+A+ HA+H  S
Sbjct: 123 HAMVSRLLPGAKVAGPDASDALAVAITHAHHLAS 156


>gi|254191518|ref|ZP_04898021.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
           pseudomallei Pasteur 52237]
 gi|157939189|gb|EDO94859.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
           pseudomallei Pasteur 52237]
          Length = 269

 Score =  139 bits (351), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 71/160 (44%), Positives = 105/160 (65%), Gaps = 1/160 (0%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
            R S+RI+GIDPGLR TG+G++DV+G  L +V+SG I +     L  RL  +Y+G++ +I
Sbjct: 86  FRFSMRILGIDPGLRVTGFGVIDVSGHQLAYVASGVIKTPT-ADLPTRLGTIYDGVSTLI 144

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
           +   P++AA+E+VFVN +  +TL LGQAR  AI       +PV+EY    +K+AV+G G 
Sbjct: 145 REHTPDQAAIEKVFVNVNPQSTLLLGQARGAAICGLVSGGLPVAEYTALQLKQAVVGYGR 204

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
             K+Q+  M+  L+  S   G DAADAL +A+CHA+  N+
Sbjct: 205 ATKEQMQEMVARLLSLSGRPGTDAADALGMAICHAHGGNT 244


>gi|76580596|gb|ABA50071.1| crossover junction endodeoxyribonuclease [Burkholderia pseudomallei
           1710b]
          Length = 275

 Score =  139 bits (350), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 71/160 (44%), Positives = 105/160 (65%), Gaps = 1/160 (0%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
            R S+RI+GIDPGLR TG+G++DV+G  L +V+SG I +     L  RL  +Y+G++ +I
Sbjct: 92  FRFSMRILGIDPGLRVTGFGVIDVSGHQLAYVASGVIKTPT-ADLPTRLGTIYDGVSTLI 150

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
           +   P++AA+E+VFVN +  +TL LGQAR  AI       +PV+EY    +K+AV+G G 
Sbjct: 151 REHTPDQAAIEKVFVNVNPQSTLLLGQARGAAICGLVSGGLPVAEYTALQLKQAVVGYGR 210

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
             K+Q+  M+  L+  S   G DAADAL +A+CHA+  N+
Sbjct: 211 ATKEQMQEMVARLLSLSGRPGTDAADALGMAICHAHGGNT 250


>gi|121599355|ref|YP_991619.1| Holliday junction resolvase [Burkholderia mallei SAVP1]
 gi|121228165|gb|ABM50683.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia mallei
           SAVP1]
          Length = 284

 Score =  139 bits (350), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 71/160 (44%), Positives = 105/160 (65%), Gaps = 1/160 (0%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
            R S+RI+GIDPGLR TG+G++DV+G  L +V+SG I +     L  RL  +Y+G++ +I
Sbjct: 101 FRFSMRILGIDPGLRVTGFGVIDVSGHQLAYVASGVIKTPT-ADLPTRLGTIYDGVSTLI 159

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
           +   P++AA+E+VFVN +  +TL LGQAR  AI       +PV+EY    +K+AV+G G 
Sbjct: 160 REHTPDQAAIEKVFVNVNPQSTLLLGQARGAAICGLVSGGLPVAEYTALQLKQAVVGYGR 219

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
             K+Q+  M+  L+  S   G DAADAL +A+CHA+  N+
Sbjct: 220 ATKEQMQEMVARLLSLSGRPGTDAADALGMAICHAHGGNT 259


>gi|167564062|ref|ZP_02356978.1| Holliday junction resolvase [Burkholderia oklahomensis EO147]
          Length = 180

 Score =  139 bits (350), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 69/156 (44%), Positives = 103/156 (66%), Gaps = 1/156 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RIIGIDPGLR TG+G++DV+G  L +V+SG ++      L  RL  +Y+G++ +I+   
Sbjct: 1   MRIIGIDPGLRVTGFGVIDVSGHQLAYVASG-VIKTPTADLPTRLGTIYDGISTLIREHT 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P++AA+E+VFVN +  +TL LGQAR  AI       +PV+EY    +K+AV+G G   K+
Sbjct: 60  PDQAAIEKVFVNVNPQSTLLLGQARGAAICGLVSGGLPVAEYTALQLKQAVVGYGRATKE 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           Q+  M+  L+  S   G DAADAL +A+CHA+  N+
Sbjct: 120 QMQEMVARLLSLSGRPGTDAADALGMAICHAHGGNT 155


>gi|161723182|ref|YP_441796.2| Holliday junction resolvase [Burkholderia thailandensis E264]
 gi|167580617|ref|ZP_02373491.1| Holliday junction resolvase [Burkholderia thailandensis TXDOH]
 gi|167618723|ref|ZP_02387354.1| Holliday junction resolvase [Burkholderia thailandensis Bt4]
 gi|257137962|ref|ZP_05586224.1| Holliday junction resolvase [Burkholderia thailandensis E264]
 gi|187611419|sp|Q2SZ53|RUVC_BURTA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
          Length = 180

 Score =  139 bits (350), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 68/156 (43%), Positives = 103/156 (66%), Gaps = 1/156 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGLR TG+G++DV+G  L +V+SG ++      L  RL  +Y+G++ +I+   
Sbjct: 1   MRILGIDPGLRVTGFGVIDVSGHRLAYVASG-VIKTPTADLPTRLGTIYDGVSTLIREHT 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P++AA+E+VFVN +  +TL LGQAR  AI       +PV+EY    +K+AV+G G   K+
Sbjct: 60  PDQAAIEKVFVNVNPQSTLLLGQARGAAICGLVSGGLPVAEYTALQLKQAVVGYGRATKE 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           Q+  M+  L+  S   G DAADAL +A+CHA+  N+
Sbjct: 120 QMQEMVARLLSLSGLPGTDAADALGMAICHAHGGNT 155


>gi|332285257|ref|YP_004417168.1| crossover junction endodeoxyribonuclease [Pusillimonas sp. T7-7]
 gi|330429210|gb|AEC20544.1| crossover junction endodeoxyribonuclease [Pusillimonas sp. T7-7]
          Length = 182

 Score =  139 bits (350), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 70/152 (46%), Positives = 105/152 (69%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGLRRTG+G++DV G  L +V+SGTIV    Q+LA RL  + + + +V+++ R
Sbjct: 1   MRILGIDPGLRRTGFGVIDVQGTRLVYVTSGTIVVPSDQALAGRLKVILDNIREVVQSTR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P  +A+E+VFVN +  +TL LGQAR  A+ + A + + V EY    IKK+V+G GH  K+
Sbjct: 61  PTVSALEKVFVNTNPASTLLLGQARGAAMCALADSLLDVHEYTALQIKKSVVGNGHAAKE 120

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
           Q+  M++ L+  +     D+ADALA A+CHA+
Sbjct: 121 QVQKMVQHLLGLNGVPAADSADALACAICHAH 152


>gi|134294767|ref|YP_001118502.1| Holliday junction resolvase [Burkholderia vietnamiensis G4]
 gi|166231589|sp|A4JBL4|RUVC_BURVG RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|134137924|gb|ABO53667.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
           vietnamiensis G4]
          Length = 180

 Score =  139 bits (350), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 69/156 (44%), Positives = 103/156 (66%), Gaps = 1/156 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGLR TG+G++DV+G  L +V+SG I +     LA RL  +++G++ +++   
Sbjct: 1   MRILGIDPGLRVTGFGVIDVSGHRLAYVASGVIRTPT-ADLATRLGTIFQGVSTLVREHA 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P++AA+EQVFVN +  +TL LGQAR  AI       +PV+EY    +K+AV+G G   K 
Sbjct: 60  PDQAAIEQVFVNVNPQSTLLLGQARGAAICGLVAGGLPVAEYTALQLKQAVVGYGRATKS 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           Q+  M+  L+  S   G DAADAL +A+CHA+  N+
Sbjct: 120 QMQEMVTRLLNLSGQPGSDAADALGMAICHAHSGNT 155


>gi|124383616|ref|YP_001027115.1| Holliday junction resolvase [Burkholderia mallei NCTC 10229]
 gi|124291636|gb|ABN00905.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia mallei
           NCTC 10229]
          Length = 275

 Score =  139 bits (350), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 71/160 (44%), Positives = 105/160 (65%), Gaps = 1/160 (0%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
            R S+RI+GIDPGLR TG+G++DV+G  L +V+SG I +     L  RL  +Y+G++ +I
Sbjct: 92  FRFSMRILGIDPGLRVTGFGVIDVSGHQLAYVASGVIKTPT-ADLPTRLGTIYDGVSTLI 150

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
           +   P++AA+E+VFVN +  +TL LGQAR  AI       +PV+EY    +K+AV+G G 
Sbjct: 151 REHTPDQAAIEKVFVNVNPQSTLLLGQARGAAICGLVSGGLPVAEYTALQLKQAVVGYGR 210

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
             K+Q+  M+  L+  S   G DAADAL +A+CHA+  N+
Sbjct: 211 ATKEQMQEMVARLLSLSGRPGTDAADALGMAICHAHGGNT 250


>gi|167571206|ref|ZP_02364080.1| Holliday junction resolvase [Burkholderia oklahomensis C6786]
          Length = 180

 Score =  139 bits (350), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 69/156 (44%), Positives = 103/156 (66%), Gaps = 1/156 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RIIGIDPGLR TG+G++DV+G  L +V+SG ++      L  RL  +Y+G++ +I+   
Sbjct: 1   MRIIGIDPGLRVTGFGVIDVSGHQLAYVASG-VIKTPTADLPTRLGAIYDGISTLIREHT 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P++AA+E+VFVN +  +TL LGQAR  AI       +PV+EY    +K+AV+G G   K+
Sbjct: 60  PDQAAIEKVFVNVNPQSTLLLGQARGAAICGLVSGGLPVAEYTALQLKQAVVGYGRATKE 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           Q+  M+  L+  S   G DAADAL +A+CHA+  N+
Sbjct: 120 QMQEMVARLLSLSGRPGTDAADALGMAICHAHGGNT 155


>gi|307294017|ref|ZP_07573861.1| crossover junction endodeoxyribonuclease RuvC [Sphingobium
           chlorophenolicum L-1]
 gi|306880168|gb|EFN11385.1| crossover junction endodeoxyribonuclease RuvC [Sphingobium
           chlorophenolicum L-1]
          Length = 163

 Score =  139 bits (349), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 68/154 (44%), Positives = 102/154 (66%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+G+DPGL  TGWG++   G+ L  +++G I +    +LA RL  L   LTD+I   +P 
Sbjct: 3   ILGLDPGLGTTGWGLIAADGNRLTHIANGQIKTDSDMALASRLLVLDLALTDLILEHQPN 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
            AAVE+VF+N +  +TLKLGQAR + +L+ + + + V EYA   +KK+V+GVG+  K+Q+
Sbjct: 63  SAAVEEVFLNVNPQSTLKLGQARGVILLAASRSGMEVGEYAARLVKKSVVGVGNASKEQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           H M+  L+P     G DA+DALA+A+ HA+H  S
Sbjct: 123 HAMVSRLLPGVKVAGPDASDALAVAITHAHHLAS 156


>gi|126439331|ref|YP_001060375.1| Holliday junction resolvase [Burkholderia pseudomallei 668]
 gi|166231588|sp|A3NDF4|RUVC_BURP6 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|126218824|gb|ABN82330.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
           pseudomallei 668]
          Length = 180

 Score =  138 bits (348), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 68/156 (43%), Positives = 103/156 (66%), Gaps = 1/156 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGLR TG+G++DV+G  L +V+SG ++      L  RL  +Y+G++ +I+   
Sbjct: 1   MRILGIDPGLRVTGFGVIDVSGHQLAYVASG-VIKTPTADLPTRLGTIYDGVSTLIREHT 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P++AA+E+VFVN +  +TL LGQAR  AI       +PV+EY    +K+AV+G G   K+
Sbjct: 60  PDQAAIEKVFVNVNPQSTLLLGQARGAAICGLVSGGLPVAEYTALQLKQAVVGYGRATKE 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           Q+  M+  L+  S   G DAADAL +A+CHA+  N+
Sbjct: 120 QMQEMVAQLLSLSGRPGTDAADALGMAICHAHGGNT 155


>gi|53720505|ref|YP_109491.1| Holliday junction resolvase [Burkholderia pseudomallei K96243]
 gi|53726198|ref|YP_103913.1| Holliday junction resolvase [Burkholderia mallei ATCC 23344]
 gi|67642317|ref|ZP_00441075.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia mallei
           GB8 horse 4]
 gi|126451211|ref|YP_001082060.1| Holliday junction resolvase [Burkholderia mallei NCTC 10247]
 gi|126453395|ref|YP_001067636.1| Holliday junction resolvase [Burkholderia pseudomallei 1106a]
 gi|134280428|ref|ZP_01767139.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
           pseudomallei 305]
 gi|162210042|ref|YP_334776.2| Holliday junction resolvase [Burkholderia pseudomallei 1710b]
 gi|167000506|ref|ZP_02266318.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia mallei
           PRL-20]
 gi|167721173|ref|ZP_02404409.1| Holliday junction resolvase [Burkholderia pseudomallei DM98]
 gi|167740149|ref|ZP_02412923.1| Holliday junction resolvase [Burkholderia pseudomallei 14]
 gi|167817362|ref|ZP_02449042.1| Holliday junction resolvase [Burkholderia pseudomallei 91]
 gi|167825770|ref|ZP_02457241.1| Holliday junction resolvase [Burkholderia pseudomallei 9]
 gi|167847252|ref|ZP_02472760.1| Holliday junction resolvase [Burkholderia pseudomallei B7210]
 gi|167895839|ref|ZP_02483241.1| Holliday junction resolvase [Burkholderia pseudomallei 7894]
 gi|167904230|ref|ZP_02491435.1| Holliday junction resolvase [Burkholderia pseudomallei NCTC 13177]
 gi|167912489|ref|ZP_02499580.1| Holliday junction resolvase [Burkholderia pseudomallei 112]
 gi|167920441|ref|ZP_02507532.1| Holliday junction resolvase [Burkholderia pseudomallei BCC215]
 gi|217420409|ref|ZP_03451914.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
           pseudomallei 576]
 gi|226198409|ref|ZP_03793978.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
           pseudomallei Pakistan 9]
 gi|237813763|ref|YP_002898214.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
           pseudomallei MSHR346]
 gi|242316570|ref|ZP_04815586.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
           pseudomallei 1106b]
 gi|254180689|ref|ZP_04887287.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
           pseudomallei 1655]
 gi|254194911|ref|ZP_04901341.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
           pseudomallei S13]
 gi|254202625|ref|ZP_04908988.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia mallei
           FMH]
 gi|254207964|ref|ZP_04914314.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia mallei
           JHU]
 gi|254260095|ref|ZP_04951149.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
           pseudomallei 1710a]
 gi|254299225|ref|ZP_04966675.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
           pseudomallei 406e]
 gi|254355896|ref|ZP_04972174.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia mallei
           2002721280]
 gi|81604342|sp|Q62HA7|RUVC_BURMA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|81607715|sp|Q63QX7|RUVC_BURPS RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|91771932|sp|Q3JNS7|RUVC_BURP1 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|166231586|sp|A3MP74|RUVC_BURM7 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|166231587|sp|A3NZ65|RUVC_BURP0 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|52210919|emb|CAH36907.1| crossover junction endodeoxyribonuclease [Burkholderia pseudomallei
           K96243]
 gi|52429621|gb|AAU50214.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia mallei
           ATCC 23344]
 gi|126227037|gb|ABN90577.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
           pseudomallei 1106a]
 gi|126244081|gb|ABO07174.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia mallei
           NCTC 10247]
 gi|134248435|gb|EBA48518.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
           pseudomallei 305]
 gi|147746872|gb|EDK53949.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia mallei
           FMH]
 gi|147751858|gb|EDK58925.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia mallei
           JHU]
 gi|148024871|gb|EDK83049.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia mallei
           2002721280]
 gi|157808953|gb|EDO86123.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
           pseudomallei 406e]
 gi|169651660|gb|EDS84353.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
           pseudomallei S13]
 gi|184211228|gb|EDU08271.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
           pseudomallei 1655]
 gi|217395821|gb|EEC35838.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
           pseudomallei 576]
 gi|225929592|gb|EEH25610.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
           pseudomallei Pakistan 9]
 gi|237504363|gb|ACQ96681.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
           pseudomallei MSHR346]
 gi|238523445|gb|EEP86883.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia mallei
           GB8 horse 4]
 gi|242139809|gb|EES26211.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
           pseudomallei 1106b]
 gi|243063560|gb|EES45746.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia mallei
           PRL-20]
 gi|254218784|gb|EET08168.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
           pseudomallei 1710a]
          Length = 180

 Score =  138 bits (347), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 68/156 (43%), Positives = 103/156 (66%), Gaps = 1/156 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGLR TG+G++DV+G  L +V+SG ++      L  RL  +Y+G++ +I+   
Sbjct: 1   MRILGIDPGLRVTGFGVIDVSGHQLAYVASG-VIKTPTADLPTRLGTIYDGVSTLIREHT 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P++AA+E+VFVN +  +TL LGQAR  AI       +PV+EY    +K+AV+G G   K+
Sbjct: 60  PDQAAIEKVFVNVNPQSTLLLGQARGAAICGLVSGGLPVAEYTALQLKQAVVGYGRATKE 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           Q+  M+  L+  S   G DAADAL +A+CHA+  N+
Sbjct: 120 QMQEMVARLLSLSGRPGTDAADALGMAICHAHGGNT 155


>gi|170732010|ref|YP_001763957.1| Holliday junction resolvase [Burkholderia cenocepacia MC0-3]
 gi|238688562|sp|B1JVV5|RUVC_BURCC RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|169815252|gb|ACA89835.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
           cenocepacia MC0-3]
          Length = 180

 Score =  138 bits (347), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 67/156 (42%), Positives = 104/156 (66%), Gaps = 1/156 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGLR TG+G++DV+G  L +V+SG ++      LA RL  +++G++ ++++  
Sbjct: 1   MRILGIDPGLRVTGFGVIDVSGHRLAYVTSG-VIRTPTADLATRLGTIFQGVSTIVRDHA 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P++AA+E+VFVN +  +TL LGQAR  AI       +PV+EY    +K+AV+G G   K 
Sbjct: 60  PDQAAIEKVFVNVNPQSTLLLGQARGAAICGLVAGGLPVAEYTALQLKQAVVGYGRATKT 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           Q+  M+  L+  S   G DAADAL +A+CHA+  N+
Sbjct: 120 QMQDMVTRLLNLSGQPGSDAADALGMAICHAHGGNT 155


>gi|107021767|ref|YP_620094.1| Holliday junction resolvase [Burkholderia cenocepacia AU 1054]
 gi|116688713|ref|YP_834336.1| Holliday junction resolvase [Burkholderia cenocepacia HI2424]
 gi|206561675|ref|YP_002232440.1| Holliday junction resolvase [Burkholderia cenocepacia J2315]
 gi|254246307|ref|ZP_04939628.1| Holliday junction resolvasome, endonuclease subunit [Burkholderia
           cenocepacia PC184]
 gi|123371877|sp|Q1BZ34|RUVC_BURCA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|166231585|sp|A0K4L6|RUVC_BURCH RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|238693124|sp|B4EES5|RUVC_BURCJ RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|105891956|gb|ABF75121.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
           cenocepacia AU 1054]
 gi|116646802|gb|ABK07443.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
           cenocepacia HI2424]
 gi|124871083|gb|EAY62799.1| Holliday junction resolvasome, endonuclease subunit [Burkholderia
           cenocepacia PC184]
 gi|198037717|emb|CAR53660.1| crossover junction endodeoxyribonuclease [Burkholderia cenocepacia
           J2315]
          Length = 180

 Score =  138 bits (347), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 67/156 (42%), Positives = 103/156 (66%), Gaps = 1/156 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGLR TG+G++DV+G  L +V+SG ++      LA RL  +++G++ +++   
Sbjct: 1   MRILGIDPGLRVTGFGVIDVSGHRLAYVTSG-VIRTPTADLATRLGTIFQGVSTIVREHA 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P++AA+E+VFVN +  +TL LGQAR  AI       +PV+EY    +K+AV+G G   K 
Sbjct: 60  PDQAAIEKVFVNVNPQSTLLLGQARGAAICGLVAGGLPVAEYTALQLKQAVVGYGRATKT 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           Q+  M+  L+  S   G DAADAL +A+CHA+  N+
Sbjct: 120 QMQEMVTRLLNLSGQPGSDAADALGMAICHAHGGNT 155


>gi|221236281|ref|YP_002518718.1| Holliday junction resolvase [Caulobacter crescentus NA1000]
 gi|220965454|gb|ACL96810.1| crossover junction endodeoxyribonuclease ruvC [Caulobacter
           crescentus NA1000]
          Length = 173

 Score =  137 bits (346), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 75/154 (48%), Positives = 104/154 (67%)

Query: 2   RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           R   RI+G+DPGLRRTGWG++ V G  +  ++ G I    +   A RL  L+EG+T VI+
Sbjct: 10  RLPTRILGLDPGLRRTGWGVLAVEGSRMTHIAHGVITPDEKAEFADRLLHLFEGITAVIE 69

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
             RP+EAAVE+VF+N +A +TLKLG ARA A+++PA A + V+EY+   +KKAV+G G  
Sbjct: 70  QHRPDEAAVEEVFLNTNAQSTLKLGHARAAALIAPARAGLLVAEYSTRLVKKAVVGTGAA 129

Query: 122 DKKQIHMMLKMLMPESFFKGKDAADALAIAVCHA 155
           DK QI  M+  L+P +     D ADALA+A+ HA
Sbjct: 130 DKAQIGFMIARLLPTAGKTTADCADALAVAITHA 163


>gi|16127468|ref|NP_422032.1| Holliday junction resolvase [Caulobacter crescentus CB15]
 gi|20978751|sp|Q9A3G6|RUVC_CAUCR RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|13424922|gb|AAK25200.1| Holliday junction resolvase [Caulobacter crescentus CB15]
          Length = 169

 Score =  137 bits (345), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 75/154 (48%), Positives = 104/154 (67%)

Query: 2   RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           R   RI+G+DPGLRRTGWG++ V G  +  ++ G I    +   A RL  L+EG+T VI+
Sbjct: 6   RLPTRILGLDPGLRRTGWGVLAVEGSRMTHIAHGVITPDEKAEFADRLLHLFEGITAVIE 65

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
             RP+EAAVE+VF+N +A +TLKLG ARA A+++PA A + V+EY+   +KKAV+G G  
Sbjct: 66  QHRPDEAAVEEVFLNTNAQSTLKLGHARAAALIAPARAGLLVAEYSTRLVKKAVVGTGAA 125

Query: 122 DKKQIHMMLKMLMPESFFKGKDAADALAIAVCHA 155
           DK QI  M+  L+P +     D ADALA+A+ HA
Sbjct: 126 DKAQIGFMIARLLPTAGKTTADCADALAVAITHA 159


>gi|190571527|ref|YP_001975885.1| crossover junction endodeoxyribonuclease RuvC [Wolbachia
           endosymbiont of Culex quinquefasciatus Pel]
 gi|238058360|sp|B3CN07|RUVC_WOLPP RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|190357799|emb|CAQ55254.1| crossover junction endodeoxyribonuclease RuvC [Wolbachia
           endosymbiont of Culex quinquefasciatus Pel]
          Length = 165

 Score =  137 bits (345), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 72/164 (43%), Positives = 104/164 (63%), Gaps = 1/164 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           I+IIG+DPG+ +TGW I+ +   +N+ F+  GTI +  +  +  RL  ++E L  VI  +
Sbjct: 2   IKIIGLDPGMSKTGWAIIRLEEKNNIKFLGGGTISTDGKLGVGERLHIIFEQLKKVIFLY 61

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P EAAVE++F+NK+  ++L LG ARAIAIL   +  +P++EY  N IKK++ G GH DK
Sbjct: 62  SPNEAAVEKIFINKNPKSSLTLGYARAIAILILRMTDLPMNEYDANYIKKSITGNGHADK 121

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
            QI  M+K ++  S  K    ADALA A+CHAY  N  +  I S
Sbjct: 122 GQIIFMVKQIVKSSNIKCHHTADALATAICHAYTKNFCFMGIGS 165


>gi|325981221|ref|YP_004293623.1| Crossover junction endodeoxyribonuclease ruvC [Nitrosomonas sp.
           AL212]
 gi|325530740|gb|ADZ25461.1| Crossover junction endodeoxyribonuclease ruvC [Nitrosomonas sp.
           AL212]
          Length = 172

 Score =  137 bits (345), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 74/163 (45%), Positives = 105/163 (64%), Gaps = 2/163 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGL  TG+G++D  G NL +VSSG+ V   +  L FRL  + + L+++I  +R
Sbjct: 1   MRILGIDPGLCITGFGVIDKNGSNLTYVSSGS-VKTSKGELPFRLKLILDNLSEIINRYR 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  ++EQVFVN +  +TL LGQAR  AI +  +  + V+EY    IK+AV+G GH  K 
Sbjct: 60  PQHVSIEQVFVNINPKSTLLLGQARGAAICAAVMNDLTVAEYTALQIKQAVVGNGHAKKD 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
           Q+  M+  L+  S   G DAADALA A+CHA +   G  KIA+
Sbjct: 120 QVQEMVVRLLKLSGSPGTDAADALACAICHA-NGGLGLGKIAT 161


>gi|78065252|ref|YP_368021.1| Holliday junction resolvase [Burkholderia sp. 383]
 gi|90146438|sp|Q39JI9|RUVC_BURS3 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|77965997|gb|ABB07377.1| Crossover junction endodeoxyribonuclease RuvC [Burkholderia sp.
           383]
          Length = 180

 Score =  137 bits (345), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 67/156 (42%), Positives = 103/156 (66%), Gaps = 1/156 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGLR TG+GI+DV+G  L +V+SG ++      LA RL  +++G++ +++   
Sbjct: 1   MRILGIDPGLRVTGFGIIDVSGHRLAYVASG-VIRTPTADLATRLGTIFQGVSTIVREHA 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+++A+E+VFVN +  +TL LGQAR  AI       +PV+EY    +K+AV+G G   K 
Sbjct: 60  PDQSAIEKVFVNVNPQSTLLLGQARGAAICGLVAGGLPVAEYTALQLKQAVVGYGRATKT 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           Q+  M+  L+  S   G DAADAL +A+CHA+  N+
Sbjct: 120 QMQEMVTRLLNLSGQPGSDAADALGMAICHAHGGNT 155


>gi|291612982|ref|YP_003523139.1| crossover junction endodeoxyribonuclease RuvC [Sideroxydans
           lithotrophicus ES-1]
 gi|291583094|gb|ADE10752.1| crossover junction endodeoxyribonuclease RuvC [Sideroxydans
           lithotrophicus ES-1]
          Length = 183

 Score =  137 bits (345), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 77/167 (46%), Positives = 105/167 (62%), Gaps = 2/167 (1%)

Query: 2   RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           + SIRI+GIDPGLR TG+G+VD  G  L +V+SG I       L  RL  +   L +VI 
Sbjct: 9   KSSIRILGIDPGLRITGFGVVDKEGQQLHYVASGCI-KTPDGELPERLKVILASLGEVIA 67

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
             +PE+ AVE+VFVN +  +TL LGQAR  AI +   A +PV+EY    +K+AV+G GH 
Sbjct: 68  QHKPEQVAVEKVFVNVNPQSTLLLGQARGAAICAAVQADLPVAEYTALQVKQAVVGNGHA 127

Query: 122 DKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
           DK+Q+  M++ L+  S     DAADALA A+CHA H   G   +A++
Sbjct: 128 DKEQVQAMVQRLLKLSGTPSPDAADALACAICHA-HGGMGMGALATK 173


>gi|171464160|ref|YP_001798273.1| crossover junction endodeoxyribonuclease RuvC [Polynucleobacter
           necessarius subsp. necessarius STIR1]
 gi|238692823|sp|B1XS24|RUVC_POLNS RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|171193698|gb|ACB44659.1| crossover junction endodeoxyribonuclease RuvC [Polynucleobacter
           necessarius subsp. necessarius STIR1]
          Length = 168

 Score =  137 bits (344), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 71/155 (45%), Positives = 102/155 (65%), Gaps = 3/155 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R IGIDPGL  TG+GI+DV G  L +V+SGTI S      A RL  LY GL +V++ +R
Sbjct: 1   MRWIGIDPGLCTTGFGIIDVDGQKLTYVASGTIESG---DPAKRLGALYAGLKEVLETYR 57

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           PE AA+E+VF+N +  +TL LGQAR   I +    ++PV+EY+   +K+A++G G   K 
Sbjct: 58  PESAAIEEVFLNVNPRSTLMLGQARGAVIAALVSEKLPVAEYSALRVKQAIVGTGRAAKP 117

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHAN 159
           Q+  M+K L+  +   G DA+DAL +A+C A+HA 
Sbjct: 118 QVQEMVKRLLRLNRAPGTDASDALGVAICAAHHAQ 152


>gi|325529032|gb|EGD06042.1| Holliday junction resolvase [Burkholderia sp. TJI49]
          Length = 180

 Score =  137 bits (344), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 67/156 (42%), Positives = 103/156 (66%), Gaps = 1/156 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGLR TG+G++DV+G  L +V+SG ++      LA RL  +++G++ +++   
Sbjct: 1   MRILGIDPGLRVTGFGVIDVSGHRLAYVTSG-VIRTPTADLATRLGTIFQGVSTLVREHA 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P++AA+E+VFVN +  +TL LGQAR  AI       +PV+EY    +K+AV+G G   K 
Sbjct: 60  PDQAAIEKVFVNVNPQSTLLLGQARGAAICGLVAGGLPVAEYTALQLKQAVVGYGRATKA 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           Q+  M+  L+  S   G DAADAL +A+CHA+  N+
Sbjct: 120 QMQEMVTRLLNLSGQPGSDAADALGMAICHAHGGNT 155


>gi|91776706|ref|YP_546462.1| crossover junction endodeoxyribonuclease RuvC [Methylobacillus
           flagellatus KT]
 gi|122985390|sp|Q1GYR6|RUVC_METFK RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|91710693|gb|ABE50621.1| crossover junction endodeoxyribonuclease RuvC [Methylobacillus
           flagellatus KT]
          Length = 180

 Score =  137 bits (344), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 71/169 (42%), Positives = 108/169 (63%), Gaps = 6/169 (3%)

Query: 4   SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVR-----QSLAFRLCQLYEGLTD 58
           + RI+GIDPGLR TG+G+++  G+ L +V+SGTI +        + L  RL  + + L +
Sbjct: 2   TFRILGIDPGLRLTGFGVIEKTGEKLAYVASGTIKTTTGKGSEIEDLPTRLKIILDSLAE 61

Query: 59  VIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGV 118
           VI N++P++AA+E+VFVN +  +TL LGQAR  AI +  L  +P++EY    +K++V+G 
Sbjct: 62  VIDNYQPQQAAIEKVFVNVNPQSTLLLGQARGAAISALVLQGLPIAEYTALQVKQSVVGH 121

Query: 119 GHGDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
           GH  K Q+  M+K L+        D+ADALA A+CHA H   G  K+A+
Sbjct: 122 GHAAKDQVQEMVKRLLNLPGLPRPDSADALACAICHA-HGGQGLGKLAT 169


>gi|89902186|ref|YP_524657.1| Holliday junction resolvase [Rhodoferax ferrireducens T118]
 gi|123278409|sp|Q21SX7|RUVC_RHOFD RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|89346923|gb|ABD71126.1| crossover junction endodeoxyribonuclease RuvC [Rhodoferax
           ferrireducens T118]
          Length = 182

 Score =  137 bits (344), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 73/167 (43%), Positives = 107/167 (64%), Gaps = 3/167 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTI--VSCVRQSLAFRLCQLYEGLTDVIKN 62
           +RI+GIDPGLR TG+G++DVAG +L +V+SGTI  +   +  L  RL  L++G+ +V+  
Sbjct: 1   MRILGIDPGLRTTGFGVIDVAGADLTYVASGTISTLHLDKGQLPARLKVLFDGIREVVAR 60

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
           ++PE A+VE VFVN +  +TL LGQAR   I +     +PV+EY    +K+AV+G G  D
Sbjct: 61  YQPECASVEIVFVNVNPQSTLLLGQARGACITALVSGDLPVAEYTALQMKQAVVGYGRAD 120

Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQD 169
           K Q+  M++ L+      G DAADAL +A+ HA HA     ++A  D
Sbjct: 121 KSQVQEMVRRLLALPGLPGPDAADALGLAITHA-HAAKALARLAQAD 166


>gi|161525863|ref|YP_001580875.1| Holliday junction resolvase [Burkholderia multivorans ATCC 17616]
 gi|189349416|ref|YP_001945044.1| Holliday junction resolvase [Burkholderia multivorans ATCC 17616]
 gi|221214499|ref|ZP_03587470.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
           multivorans CGD1]
 gi|226698747|sp|A9AH71|RUVC_BURM1 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|160343292|gb|ABX16378.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
           multivorans ATCC 17616]
 gi|189333438|dbj|BAG42508.1| crossover junction endodeoxyribonuclease [Burkholderia multivorans
           ATCC 17616]
 gi|221165756|gb|EED98231.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
           multivorans CGD1]
          Length = 180

 Score =  136 bits (343), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 67/156 (42%), Positives = 102/156 (65%), Gaps = 1/156 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGLR TG+G++DV+G  L +V+SG ++      LA RL  ++ G++ +++   
Sbjct: 1   MRILGIDPGLRVTGFGVIDVSGHQLAYVASG-VIRTPTADLATRLGTIFAGVSTLVREHA 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P++AA+E+VFVN +  +TL LGQAR  AI       +PV+EY    +K+A++G G   K 
Sbjct: 60  PDQAAIEKVFVNVNPQSTLLLGQARGAAICGLVSGGLPVAEYTALQLKQAIVGYGRATKA 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           Q+  M+  L+  S   G DAADAL IA+CHA+  N+
Sbjct: 120 QMQEMVTRLLSLSGQPGSDAADALGIAICHAHGGNT 155


>gi|167644750|ref|YP_001682413.1| Holliday junction resolvase [Caulobacter sp. K31]
 gi|189046060|sp|B0SUN7|RUVC_CAUSK RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|167347180|gb|ABZ69915.1| crossover junction endodeoxyribonuclease RuvC [Caulobacter sp. K31]
          Length = 169

 Score =  136 bits (343), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 78/154 (50%), Positives = 104/154 (67%)

Query: 2   RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           R  IRI+G+DPGLRRTGWG+V V G  +  V+ G IV   +   A RL  L+EG+  VI 
Sbjct: 6   RIPIRILGLDPGLRRTGWGVVSVEGSRMSHVAHGVIVPDEKGEFASRLLCLFEGICAVID 65

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
             RP+EAAVE+VF+N +A +TLKLG ARA A+++PA A + V+EY+   +KKAV+G G  
Sbjct: 66  AHRPDEAAVEEVFLNTNAQSTLKLGHARAAALIAPARAGLLVAEYSTRLVKKAVVGTGAA 125

Query: 122 DKKQIHMMLKMLMPESFFKGKDAADALAIAVCHA 155
           DK QI  M+  L+P +     D ADALA+A+ HA
Sbjct: 126 DKAQIGFMIARLLPTAGKTTADCADALAVAITHA 159


>gi|254253223|ref|ZP_04946541.1| Holliday junction resolvasome endonuclease subunit [Burkholderia
           dolosa AUO158]
 gi|124895832|gb|EAY69712.1| Holliday junction resolvasome endonuclease subunit [Burkholderia
           dolosa AUO158]
          Length = 180

 Score =  136 bits (342), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 67/156 (42%), Positives = 102/156 (65%), Gaps = 1/156 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGLR TG+G++DV+G  L +V+SG ++      LA RL  ++ G++ +++   
Sbjct: 1   MRILGIDPGLRVTGFGVIDVSGHRLAYVTSG-VIRTPTADLATRLGTIFHGVSTLVREHA 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P++AA+E+VFVN +  +TL LGQAR  AI       +PV+EY    +K+AV+G G   K 
Sbjct: 60  PDQAAIEKVFVNVNPQSTLLLGQARGAAICGLVAGGLPVAEYTALQLKQAVVGYGRATKT 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           Q+  M+  L+  S   G DAADAL +A+CHA+  N+
Sbjct: 120 QMQEMVTRLLNLSGQPGTDAADALGMAICHAHGGNT 155


>gi|221202295|ref|ZP_03575329.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
           multivorans CGD2M]
 gi|221209109|ref|ZP_03582103.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
           multivorans CGD2]
 gi|221171013|gb|EEE03466.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
           multivorans CGD2]
 gi|221177869|gb|EEE10282.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
           multivorans CGD2M]
          Length = 180

 Score =  136 bits (342), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 67/156 (42%), Positives = 102/156 (65%), Gaps = 1/156 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGLR TG+G++DV+G  L +V+SG ++      LA RL  ++ G++ +++   
Sbjct: 1   MRILGIDPGLRVTGFGVIDVSGHRLAYVASG-VIRTPTADLATRLGTIFAGVSTLVREHA 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P++AA+E+VFVN +  +TL LGQAR  AI       +PV+EY    +K+A++G G   K 
Sbjct: 60  PDQAAIEKVFVNVNPQSTLLLGQARGAAICGLVSGGLPVAEYTALQLKQAIVGYGRATKA 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           Q+  M+  L+  S   G DAADAL IA+CHA+  N+
Sbjct: 120 QMQEMVTRLLSLSGQPGSDAADALGIAICHAHGGNT 155


>gi|296445109|ref|ZP_06887069.1| crossover junction endodeoxyribonuclease RuvC [Methylosinus
           trichosporium OB3b]
 gi|296257283|gb|EFH04350.1| crossover junction endodeoxyribonuclease RuvC [Methylosinus
           trichosporium OB3b]
          Length = 179

 Score =  136 bits (342), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 81/159 (50%), Positives = 113/159 (71%), Gaps = 1/159 (0%)

Query: 3   KSIRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           ++IRI+G+DPGLR TGWGI++ + G  L FV+ G++ S    +LA RL QL  GL ++I 
Sbjct: 10  ETIRILGVDPGLRNTGWGIIEASRGSRLSFVACGSLHSDGDAALAERLAQLQRGLAEIIT 69

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
              P EAAVE+ FVN+D  + LKLG AR +A+ +PALA + V+EYA N +KK V+G GH 
Sbjct: 70  AHSPHEAAVEETFVNRDPQSALKLGLARGVALAAPALAGLEVAEYAANLVKKTVVGNGHA 129

Query: 122 DKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           +K Q+ MM+++L+P S  +  DAADALA+A+CHA H  S
Sbjct: 130 EKAQVAMMVRVLLPASRAESADAADALAVAICHAQHRAS 168


>gi|148555056|ref|YP_001262638.1| Holliday junction resolvase [Sphingomonas wittichii RW1]
 gi|166233303|sp|A5V884|RUVC_SPHWW RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|148500246|gb|ABQ68500.1| crossover junction endodeoxyribonuclease RuvC [Sphingomonas
           wittichii RW1]
          Length = 165

 Score =  135 bits (341), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 73/154 (47%), Positives = 105/154 (68%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           +IG DPGL  TGWG++   G+ L  V++G I +     L+ RL  L+  L ++I+ +RPE
Sbjct: 3   LIGFDPGLGTTGWGVIAADGNRLSHVANGQIKTEPSMELSRRLYLLHSALAEIIRTYRPE 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
            AAVE+V  N +A +TLKLGQAR + +L+ ALA + V EY P+ +KKAV+G G  +K+Q+
Sbjct: 63  AAAVEEVLGNSNAQSTLKLGQARGVVLLAAALAEVSVGEYHPSIVKKAVVGTGGAEKRQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
             M+K+L+P +   G DAADALA+AV HA+H  S
Sbjct: 123 QAMVKVLLPGAKLSGPDAADALAVAVTHAHHLAS 156


>gi|172059670|ref|YP_001807322.1| Holliday junction resolvase [Burkholderia ambifaria MC40-6]
 gi|238689179|sp|B1YTE1|RUVC_BURA4 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|171992187|gb|ACB63106.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
           ambifaria MC40-6]
          Length = 183

 Score =  135 bits (341), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 66/156 (42%), Positives = 103/156 (66%), Gaps = 1/156 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGLR TG+G++DV+G  L +V+SG ++      LA RL  +++G++ +++   
Sbjct: 1   MRILGIDPGLRVTGFGVIDVSGHRLAYVASG-VIRTPTADLATRLGTIFQGVSTLVREHA 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P++AA+EQVFVN +  +TL LGQAR  AI       +PV+EY    +K+AV+G G   K 
Sbjct: 60  PDQAAIEQVFVNVNPQSTLLLGQARGAAICGLVSGGLPVAEYTALQLKQAVVGYGRATKS 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           Q+  M+  L+  +   G DAADAL +A+CHA+  ++
Sbjct: 120 QMQEMVTRLLNLTGQPGSDAADALGMAICHAHSGST 155


>gi|115350637|ref|YP_772476.1| Holliday junction resolvase [Burkholderia ambifaria AMMD]
 gi|170699607|ref|ZP_02890646.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
           ambifaria IOP40-10]
 gi|171319640|ref|ZP_02908734.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
           ambifaria MEX-5]
 gi|122324003|sp|Q0BI81|RUVC_BURCM RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|115280625|gb|ABI86142.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
           ambifaria AMMD]
 gi|170135489|gb|EDT03778.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
           ambifaria IOP40-10]
 gi|171095131|gb|EDT40137.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
           ambifaria MEX-5]
          Length = 183

 Score =  135 bits (341), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 66/156 (42%), Positives = 103/156 (66%), Gaps = 1/156 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGLR TG+G++DV+G  L +V+SG ++      LA RL  +++G++ +++   
Sbjct: 1   MRILGIDPGLRVTGFGVIDVSGHRLAYVASG-VIRTPTADLATRLGTIFQGVSTLVREHA 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P++AA+EQVFVN +  +TL LGQAR  AI       +PV+EY    +K+AV+G G   K 
Sbjct: 60  PDQAAIEQVFVNVNPQSTLLLGQARGAAICGLVSGGLPVAEYTALQLKQAVVGYGRATKS 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           Q+  M+  L+  +   G DAADAL +A+CHA+  ++
Sbjct: 120 QMQEMVTRLLNLTGQPGSDAADALGMAICHAHSGST 155


>gi|319764354|ref|YP_004128291.1| crossover junction endodeoxyribonuclease ruvc [Alicycliphilus
           denitrificans BC]
 gi|330826348|ref|YP_004389651.1| crossover junction endodeoxyribonuclease RuvC [Alicycliphilus
           denitrificans K601]
 gi|317118915|gb|ADV01404.1| crossover junction endodeoxyribonuclease RuvC [Alicycliphilus
           denitrificans BC]
 gi|329311720|gb|AEB86135.1| crossover junction endodeoxyribonuclease RuvC [Alicycliphilus
           denitrificans K601]
          Length = 182

 Score =  135 bits (339), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 73/165 (44%), Positives = 104/165 (63%), Gaps = 3/165 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTI--VSCVRQSLAFRLCQLYEGLTDVIKN 62
           +RI+GIDPGL+ TG+G+VDV G  L +V+SGTI         L  RL  L++G+T+V   
Sbjct: 1   MRILGIDPGLQTTGFGVVDVDGQRLAYVASGTIRTTGLALGDLPGRLKLLFDGITEVAAR 60

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
           +RP+ AAVE VFVN +  +TL LGQAR  A+ +   A +PV+EY    +KKAV+G G   
Sbjct: 61  YRPDAAAVEIVFVNVNPQSTLLLGQARGAALTALVNADLPVAEYTALQMKKAVVGHGRAA 120

Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
           K Q+  M++ L+      G DAADAL +A+ HA HA +   ++ +
Sbjct: 121 KSQVQEMVRRLLALPGLPGTDAADALGLAITHA-HAGAAMARVGA 164


>gi|83749325|ref|ZP_00946322.1| Crossover junction endodeoxyribonuclease ruvC [Ralstonia
           solanacearum UW551]
 gi|207742354|ref|YP_002258746.1| crossover junction endodeoxyribonuclease ruvc (hollidayjunction
           nuclease ruvc) (holliday juction resolvase ruvc) protein
           [Ralstonia solanacearum IPO1609]
 gi|83724003|gb|EAP71184.1| Crossover junction endodeoxyribonuclease ruvC [Ralstonia
           solanacearum UW551]
 gi|206593744|emb|CAQ60671.1| crossover junction endodeoxyribonuclease ruvc (hollidayjunction
           nuclease ruvc) (holliday juction resolvase ruvc) protein
           [Ralstonia solanacearum IPO1609]
          Length = 181

 Score =  135 bits (339), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 67/156 (42%), Positives = 102/156 (65%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGLR TG+G+++  G  L +V+SGTI S     L  RL  LY+G++++++ +R
Sbjct: 1   MRILGIDPGLRTTGFGVLERHGHQLVYVASGTIKSDGNADLPSRLKTLYDGVSELVRTYR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ A++E+VFVN +  +TL LGQAR  AI       +PV EY    +K AV+G G  +K+
Sbjct: 61  PDCASIEKVFVNVNPQSTLLLGQARGAAICGLVSGELPVFEYTALQLKLAVVGYGRANKE 120

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           Q+  M+  L+      G DAADAL +A+CHA+  ++
Sbjct: 121 QVQDMVVRLLNLEGRPGTDAADALGVAICHAHGGDT 156


>gi|58584954|ref|YP_198527.1| Holliday junction resolvasome, endonuclease subunit, RuvC
           [Wolbachia endosymbiont strain TRS of Brugia malayi]
 gi|75497659|sp|Q5GRT9|RUVC_WOLTR RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|58419270|gb|AAW71285.1| Holliday junction resolvasome, endonuclease subunit, RuvC
           [Wolbachia endosymbiont strain TRS of Brugia malayi]
          Length = 162

 Score =  135 bits (339), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 66/160 (41%), Positives = 101/160 (63%), Gaps = 1/160 (0%)

Query: 6   RIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           RIIG+DPG+ +TGW I+D+    N+ F+ SGTI +  +  +  RL  ++E L  VI  + 
Sbjct: 3   RIIGLDPGMSKTGWAIIDMDERSNIEFLGSGTISTGNKLGMGERLHVIFEQLKKVISLYS 62

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P EAA+E++FVNK+  ++L LG AR I IL   +  + ++EY  N +KK++ G GH DK 
Sbjct: 63  PSEAAIEKIFVNKNPKSSLTLGYARGIVILVLEITELTMNEYDTNYVKKSITGNGHADKD 122

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYK 164
           Q+  M+K ++     K   AADALA+A+CH Y  +S + +
Sbjct: 123 QVIFMVKQIIKNLNIKCHHAADALAVAICHVYTKSSYFVR 162


>gi|207727948|ref|YP_002256342.1| crossover junction endodeoxyribonuclease ruvc (hollidayjunction
           nuclease ruvc) (holliday juction resolvase ruvc) protein
           [Ralstonia solanacearum MolK2]
 gi|206591191|emb|CAQ56803.1| crossover junction endodeoxyribonuclease ruvc (hollidayjunction
           nuclease ruvc) (holliday juction resolvase ruvc) protein
           [Ralstonia solanacearum MolK2]
          Length = 181

 Score =  135 bits (339), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 67/156 (42%), Positives = 102/156 (65%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGLR TG+G+++  G  L +V+SGTI S     L  RL  LY+G++++++ +R
Sbjct: 1   MRILGIDPGLRTTGFGVLERHGHQLVYVASGTIKSDGNADLPSRLKTLYDGVSELVRTYR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ A++E+VFVN +  +TL LGQAR  AI       +PV EY    +K AV+G G  +K+
Sbjct: 61  PDCASIEKVFVNVNPQSTLLLGQARGAAICGLVSGELPVFEYTALQLKLAVVGYGRANKE 120

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           Q+  M+  L+      G DAADAL +A+CHA+  ++
Sbjct: 121 QVQDMVVRLLNLEGRPGTDAADALGVAICHAHGGDT 156


>gi|253699568|ref|YP_003020757.1| Holliday junction resolvase [Geobacter sp. M21]
 gi|259495688|sp|C6E1T0|RUVC_GEOSM RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|251774418|gb|ACT16999.1| crossover junction endodeoxyribonuclease RuvC [Geobacter sp. M21]
          Length = 164

 Score =  134 bits (338), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 65/152 (42%), Positives = 98/152 (64%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R+TG+GI+   G+ L  V +G I +   +    RL +++ GL+++I  +RPE
Sbjct: 3   ILGIDPGSRKTGYGIISKQGNRLIHVDNGAIFTQSAKDFPERLEKIFTGLSEIIAQYRPE 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             AVE VF+ K+A + LKLGQAR  AI++     +PV EY    +K+AV+G G  +K Q+
Sbjct: 63  VVAVEDVFLAKNAQSALKLGQARGAAIVAAVNVGLPVHEYTAMQVKQAVVGTGRAEKAQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHA 158
             M+K L+       +DA+DALA+A+CHA+ A
Sbjct: 123 QQMIKALLNLPEVAQEDASDALAVAICHAHSA 154


>gi|197119679|ref|YP_002140106.1| Holliday junction resolvase [Geobacter bemidjiensis Bem]
 gi|226698755|sp|B5EAH1|RUVC_GEOBB RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|197089039|gb|ACH40310.1| crossover junction endodeoxyribonuclease RuvC [Geobacter
           bemidjiensis Bem]
          Length = 164

 Score =  134 bits (338), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 65/152 (42%), Positives = 98/152 (64%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R+TG+GI+   G+ L  V +G I +   +    RL +++ GL+++I  +RPE
Sbjct: 3   ILGIDPGSRKTGYGIISKQGNRLIHVDNGAIFTQSAKDFPERLEKIFTGLSEIIAQYRPE 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             AVE VF+ K+A + LKLGQAR  AI++     +PV EY    +K+AV+G G  +K Q+
Sbjct: 63  VVAVEDVFLAKNAQSALKLGQARGAAIVAAVNVGLPVHEYTAMQVKQAVVGTGRAEKAQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHA 158
             M+K L+       +DA+DALA+A+CHA+ A
Sbjct: 123 QQMIKALLNLPEVAQEDASDALAVAICHAHSA 154


>gi|329848090|ref|ZP_08263118.1| crossover junction endodeoxyribonuclease RuvC [Asticcacaulis
           biprosthecum C19]
 gi|328843153|gb|EGF92722.1| crossover junction endodeoxyribonuclease RuvC [Asticcacaulis
           biprosthecum C19]
          Length = 176

 Score =  134 bits (338), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 80/163 (49%), Positives = 106/163 (65%), Gaps = 10/163 (6%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M   +RI+G+DPGLRR GWG++DV G  L +V+ G I       LA RL  L+EG+  VI
Sbjct: 1   MMNRVRILGLDPGLRRLGWGVIDVEGARLSWVAHGVIEPPQGDDLAVRLLNLFEGVNAVI 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             W+P+EAA+E+ FVN +  +TLKLG ARA A+L+PA A + V+EYA   IKK+V+G G 
Sbjct: 61  AQWQPDEAAIEETFVNMNPSSTLKLGHARAAAMLAPARAGLVVAEYAALDIKKSVVGAGR 120

Query: 121 GDKKQIHMMLKMLMPESFFKGK-------DAADALAIAVCHAY 156
            +K Q+  M+K L+P     GK       DAADALA AV HA+
Sbjct: 121 AEKDQVLFMIKRLLP---MAGKTEAGLPTDAADALACAVTHAH 160


>gi|300705138|ref|YP_003746741.1| endodeoxyribonuclease subunit C of ruvABC holliday junction
           resolvasome [Ralstonia solanacearum CFBP2957]
 gi|299072802|emb|CBJ44157.1| endodeoxyribonuclease, subunit C of RuvABC Holliday junction
           resolvasome [Ralstonia solanacearum CFBP2957]
          Length = 181

 Score =  134 bits (338), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 67/156 (42%), Positives = 102/156 (65%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGLR TG+G+++  G  L +V+SGTI S     L  RL  LY+G++++++ +R
Sbjct: 1   MRILGIDPGLRTTGFGVLERHGHQLVYVASGTIKSDGNTDLPSRLKTLYDGVSELVRTYR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ A++E+VFVN +  +TL LGQAR  AI       +PV EY    +K AV+G G  +K+
Sbjct: 61  PDCASIEKVFVNVNPQSTLLLGQARGAAICGLVSGGLPVFEYTALQLKLAVVGYGRANKE 120

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           Q+  M+  L+      G DAADAL +A+CHA+  ++
Sbjct: 121 QVQDMVVRLLNLEGRPGTDAADALGVAICHAHGGDT 156


>gi|77919930|ref|YP_357745.1| Holliday junction resolvase [Pelobacter carbinolicus DSM 2380]
 gi|90146471|sp|Q3A232|RUVC_PELCD RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|77546013|gb|ABA89575.1| crossover junction endodeoxyribonuclease RuvC [Pelobacter
           carbinolicus DSM 2380]
          Length = 161

 Score =  134 bits (337), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 67/157 (42%), Positives = 104/157 (66%), Gaps = 2/157 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPG R TG+G+++  G+ L  V +G I +     LA RL  +Y+GL+ VI ++ 
Sbjct: 1   MRILGIDPGTRITGYGLIEKIGNRLLHVDNGAIYTRTDAPLADRLKTIYDGLSRVIADYA 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P   AVE++FV K+A++ LKLG AR +A+L+   A +PV+EY    +K+AV+G G   K 
Sbjct: 61  PTGVAVERIFVAKNALSALKLGHARGVAMLAGVNASLPVAEYTAVEVKQAVVGYGRAAKP 120

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHA--YHAN 159
           Q+  M+++L+       +DA+DALA+A+CHA  +H N
Sbjct: 121 QVQQMVRVLLNLPEIAQEDASDALAVAICHAHCFHLN 157


>gi|170693380|ref|ZP_02884539.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
           graminis C4D1M]
 gi|170141535|gb|EDT09704.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
           graminis C4D1M]
          Length = 180

 Score =  134 bits (337), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 65/156 (41%), Positives = 101/156 (64%), Gaps = 1/156 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGLR TG+G++D +G  L +V+SG ++      L  RL  ++EG++ +I+   
Sbjct: 1   MRILGIDPGLRVTGFGVIDQSGHTLSYVASG-VIKTADTDLPSRLGTIFEGISTLIRQHS 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+++A+E+VFVN +  +TL LGQAR  AI       +PV+EY    +K+AV+G G   K+
Sbjct: 60  PDQSAIEKVFVNVNPQSTLLLGQARGAAICGLVAGGVPVAEYTALQLKQAVVGYGRATKE 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           Q+  M+  L+  S   G DAADAL +A+CHA+   +
Sbjct: 120 QMQQMVVRLLNLSGVPGTDAADALGMAICHAHGGTT 155


>gi|187925316|ref|YP_001896958.1| Holliday junction resolvase [Burkholderia phytofirmans PsJN]
 gi|238689471|sp|B2SYJ9|RUVC_BURPP RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|187716510|gb|ACD17734.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
           phytofirmans PsJN]
          Length = 180

 Score =  134 bits (337), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 65/156 (41%), Positives = 102/156 (65%), Gaps = 1/156 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGLR TG+G++D +G  L +V+SG ++      L  RL  ++EG++ +I+   
Sbjct: 1   MRILGIDPGLRVTGFGVIDQSGHTLSYVASG-VIKTADADLPSRLGTIFEGISTLIRQHS 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+++A+E+VFVN +  +TL LGQAR  AI     + +PV+EY    +K+AV+G G   K+
Sbjct: 60  PDQSAIEKVFVNVNPQSTLLLGQARGAAICGLVASGVPVAEYTALQLKQAVVGYGRATKE 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           Q+  M+  L+  S   G DAADAL +A+CHA+   +
Sbjct: 120 QMQQMVVRLLNLSGVPGTDAADALGMAICHAHGGTT 155


>gi|218680786|ref|ZP_03528683.1| Holliday junction resolvase [Rhizobium etli CIAT 894]
          Length = 113

 Score =  134 bits (337), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 75/110 (68%), Positives = 90/110 (81%)

Query: 57  TDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVI 116
            +V+  ++P+EAAVEQ FVNKDAVATLKLGQAR IA+L PA A + VSEYAPN +KKAVI
Sbjct: 1   AEVVHAYKPDEAAVEQTFVNKDAVATLKLGQARGIAMLVPARAGLHVSEYAPNAVKKAVI 60

Query: 117 GVGHGDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
           GVGHG+K QIHMMLK+LMP+  FKG DAADALAIA+CHA++  S   + A
Sbjct: 61  GVGHGEKHQIHMMLKILMPKVEFKGDDAADALAIAICHAHNRGSNRMRQA 110


>gi|30248235|ref|NP_840305.1| crossover junction endodeoxyribonuclease RuvC [Nitrosomonas
           europaea ATCC 19718]
 gi|44888452|sp|Q82XP5|RUVC_NITEU RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|30180120|emb|CAD84122.1| Crossover junction endodeoxyribonuclease RuvC [Nitrosomonas
           europaea ATCC 19718]
          Length = 181

 Score =  134 bits (337), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 73/167 (43%), Positives = 105/167 (62%), Gaps = 2/167 (1%)

Query: 3   KSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
           K IRI+GIDPGLR TG+GIV+  G+ L ++ SG +V+     L  RL  + +GL ++I  
Sbjct: 9   KGIRILGIDPGLRITGFGIVEKIGNRLVYIGSGCVVTG-ESGLPDRLKTILDGLNEIILQ 67

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
            +PE+ AVEQVFVN +  +TL LGQAR  AI +  L  + V EY    +K+AV+G GH  
Sbjct: 68  HKPEQVAVEQVFVNINPKSTLLLGQARGAAISAAVLHELSVYEYTALQVKQAVVGNGHAR 127

Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQD 169
           K+Q+  M+  L+        DAADALA A+CHA H  +G   +++++
Sbjct: 128 KEQVQEMVMRLLGLGERPRPDAADALACAICHA-HGGTGLLTLSARN 173


>gi|167586149|ref|ZP_02378537.1| Holliday junction resolvase [Burkholderia ubonensis Bu]
          Length = 180

 Score =  134 bits (337), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 66/152 (43%), Positives = 101/152 (66%), Gaps = 1/152 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGLR TG+G++DV+G  L +V+SG ++      LA RL  +++G++ +++   
Sbjct: 1   MRILGIDPGLRVTGFGVIDVSGHRLAYVTSG-VIRTPTADLATRLGTIFQGVSTLVREHA 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P++AA+E+VFVN +  +TL LGQAR  AI       +PV+EY    +K+AV+G G   K 
Sbjct: 60  PDQAAIEKVFVNVNPQSTLLLGQARGAAICGLVTGGLPVAEYTALQLKQAVVGYGRATKA 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
           Q+  M+  L+  S   G DAADAL +A+CHA+
Sbjct: 120 QMQEMVTRLLNLSGQPGTDAADALGMAICHAH 151


>gi|315498699|ref|YP_004087503.1| crossover junction endodeoxyribonuclease ruvc [Asticcacaulis
           excentricus CB 48]
 gi|315416711|gb|ADU13352.1| crossover junction endodeoxyribonuclease RuvC [Asticcacaulis
           excentricus CB 48]
          Length = 192

 Score =  134 bits (336), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 78/156 (50%), Positives = 106/156 (67%), Gaps = 4/156 (2%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           IRIIG+DPGLRR GWG++DV G  L +V+ G I+   +  L+ RL  L+E L+ VI  +R
Sbjct: 6   IRIIGLDPGLRRLGWGVLDVEGARLNWVAHGVILPDEKAELSVRLLYLFEELSKVILLYR 65

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+EAA+E+ FVN +  +TLKLG ARA A+L+PA A + V+EYA   +KK+V+G G  DK 
Sbjct: 66  PQEAAIEETFVNMNPASTLKLGHARAAAMLAPAQAGLSVAEYAALDVKKSVVGAGRADKD 125

Query: 125 QIHMMLKMLMPESFFKGK----DAADALAIAVCHAY 156
           QI  M+K L+P +         D ADALA+AV HA+
Sbjct: 126 QILFMIKRLLPRAAAAENGLTPDMADALAVAVTHAH 161


>gi|91785163|ref|YP_560369.1| Holliday junction resolvase [Burkholderia xenovorans LB400]
 gi|296157350|ref|ZP_06840186.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia sp.
           Ch1-1]
 gi|123358466|sp|Q13UC2|RUVC_BURXL RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|91689117|gb|ABE32317.1| Crossover junction endodeoxyribonuclease RuvC [Burkholderia
           xenovorans LB400]
 gi|295892686|gb|EFG72468.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia sp.
           Ch1-1]
          Length = 180

 Score =  134 bits (336), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 65/156 (41%), Positives = 101/156 (64%), Gaps = 1/156 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGLR TG+G++D +G  L +V+SG ++      L  RL  ++EG++ +I+   
Sbjct: 1   MRILGIDPGLRVTGFGVIDQSGHTLSYVASG-VIKTADADLPSRLGTIFEGISTLIRQHS 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+++A+E+VFVN +  +TL LGQAR  AI       +PV+EY    +K+AV+G G   K+
Sbjct: 60  PDQSAIEKVFVNVNPQSTLLLGQARGAAICGLVAGGVPVAEYTALQLKQAVVGYGRATKE 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           Q+  M+  L+  S   G DAADAL +A+CHA+   +
Sbjct: 120 QMQQMVVRLLNLSGVPGTDAADALGMAICHAHGGTT 155


>gi|94309371|ref|YP_582581.1| Holliday junction resolvase [Cupriavidus metallidurans CH34]
 gi|122988061|sp|Q1LRB4|RUVC_RALME RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|93353223|gb|ABF07312.1| component of RuvABC resolvasome, endonuclease [Cupriavidus
           metallidurans CH34]
          Length = 181

 Score =  134 bits (336), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 69/156 (44%), Positives = 101/156 (64%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGLR TG+G+++  G+ L +V+SGTI S    SL  RL  LY+G+++V + + 
Sbjct: 1   MRILGIDPGLRTTGFGVLEKHGNKLAYVASGTIRSNGETSLPERLKTLYDGISEVARTYA 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ AA+E+VFVN +  +TL LGQAR  AI       +PV EY    +K AV+G G  +K+
Sbjct: 61  PDCAAIEKVFVNVNPQSTLLLGQARGAAICGLVGQGLPVFEYTALQLKVAVVGYGRANKE 120

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           Q+  M+  L+  S     DAADAL +A+CHA   ++
Sbjct: 121 QVQEMVMRLLSLSGRPSSDAADALGVAICHANGGDT 156


>gi|297539688|ref|YP_003675457.1| crossover junction endodeoxyribonuclease RuvC [Methylotenera sp.
           301]
 gi|297259035|gb|ADI30880.1| crossover junction endodeoxyribonuclease RuvC [Methylotenera sp.
           301]
          Length = 187

 Score =  133 bits (335), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 70/175 (40%), Positives = 108/175 (61%), Gaps = 12/175 (6%)

Query: 4   SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCV-----------RQSLAFRLCQL 52
           ++RI+GIDPGLR TG+G+++  G+ + ++SSGTI +             R+ L  RL  +
Sbjct: 3   NVRILGIDPGLRLTGFGVIEKVGEKITYISSGTIKTASGKKNKVEGEDDREELPARLKII 62

Query: 53  YEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIK 112
            +GL +VI  ++P + A+E+VFVN +  +TL LGQAR  AI +  +  + V+EY    +K
Sbjct: 63  LDGLFEVIDTYQPNQVAIEKVFVNINPQSTLLLGQARGAAISAAVIRNLSVAEYTALQVK 122

Query: 113 KAVIGVGHGDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
           +AV+G GH  K+Q+  M+K L+        D+ADALA A+CHA H   G  K+A+
Sbjct: 123 QAVVGNGHAQKEQVQEMVKRLLNLPATPKPDSADALACAICHA-HGGQGLGKLAT 176


>gi|17545222|ref|NP_518624.1| Holliday junction resolvase [Ralstonia solanacearum GMI1000]
 gi|20978746|sp|Q8Y233|RUVC_RALSO RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|17427513|emb|CAD14031.1| probable crossover junction endodeoxyribonuclease ruvc
           (hollidayjunction nuclease ruvc) (holliday juction
           resolvase ruvc) protein [Ralstonia solanacearum GMI1000]
          Length = 181

 Score =  133 bits (334), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 66/156 (42%), Positives = 100/156 (64%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGLR TG+G+++  G  L +V+SGTI S     L  RL  LY+G++++++ +R
Sbjct: 1   MRILGIDPGLRTTGFGVLERHGHQLVYVASGTIKSDGNADLPSRLKTLYDGVSELVRTYR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ A++E+VFVN +  +TL LGQAR   I       +PV EY    +K+AV+G G  +K 
Sbjct: 61  PDCASIEKVFVNVNPQSTLLLGQARGAVICGLMSGNLPVFEYTALQLKQAVVGYGRANKD 120

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           Q+  M+  L+      G DAADAL +A+CHA+   +
Sbjct: 121 QVQDMVVRLLNLEGRPGTDAADALGVAICHAHGGET 156


>gi|307730946|ref|YP_003908170.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia sp.
           CCGE1003]
 gi|307585481|gb|ADN58879.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia sp.
           CCGE1003]
          Length = 180

 Score =  133 bits (334), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 65/152 (42%), Positives = 100/152 (65%), Gaps = 1/152 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGLR TG+G++D +G  L +V+SG ++      L  RL  +++G++ +I+   
Sbjct: 1   MRILGIDPGLRVTGFGVIDQSGHTLSYVASG-VIKTADADLPSRLGTIFDGISTLIRQHS 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P++AA+E+VFVN +  +TL LGQAR  AI       +PV+EY    +K+AV+G G   K+
Sbjct: 60  PDQAAIEKVFVNVNPQSTLLLGQARGAAICGLVAGGVPVAEYTALQLKQAVVGYGRATKE 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
           Q+  M+  L+  S   G DAADAL +A+CHA+
Sbjct: 120 QMQQMVVRLLSLSGVPGTDAADALGMAICHAH 151


>gi|313202067|ref|YP_004040725.1| crossover junction endodeoxyribonuclease ruvc [Methylovorus sp.
           MP688]
 gi|312441383|gb|ADQ85489.1| crossover junction endodeoxyribonuclease RuvC [Methylovorus sp.
           MP688]
          Length = 178

 Score =  133 bits (334), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 70/168 (41%), Positives = 106/168 (63%), Gaps = 6/168 (3%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVR-----QSLAFRLCQLYEGLTDV 59
           +RI+GIDPGLR TG+G+++  G+ L +V+SGTI +        + L  RL  + +GL +V
Sbjct: 1   MRILGIDPGLRLTGFGVIEKTGEKLSYVASGTIKTTQGKGAEIEDLPSRLKIILDGLAEV 60

Query: 60  IKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVG 119
           I  + PE+ A+E+VFVN +  +TL LGQAR  AI +  +  +PV+EY    +K++V+G G
Sbjct: 61  IATYAPEQVAIEKVFVNVNPQSTLLLGQARGAAICAAVIQNLPVAEYTALQVKQSVVGNG 120

Query: 120 HGDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
           H  K+Q+  M+K L+        D+ADALA A+CHA H   G   +A+
Sbjct: 121 HAAKEQVQEMVKRLLKLPGVPKPDSADALACAICHA-HGGQGLGLLAT 167


>gi|237746838|ref|ZP_04577318.1| crossover junction endodeoxyribonuclease ruvC [Oxalobacter
           formigenes HOxBLS]
 gi|229378189|gb|EEO28280.1| crossover junction endodeoxyribonuclease ruvC [Oxalobacter
           formigenes HOxBLS]
          Length = 181

 Score =  133 bits (334), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 64/152 (42%), Positives = 100/152 (65%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++I+GIDPGLR TG+GI+   G+ L +++SGT+ +     L  RL  +++G+ ++I  +R
Sbjct: 1   MKILGIDPGLRTTGFGIIHKKGNALHYIASGTVKTPAEAGLPLRLKTIFDGVNEIITQYR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ AA+E+VFVN +  +TL LGQAR  AI +   + + V E+    IK+AV+G G   KK
Sbjct: 61  PDCAAIEKVFVNVNPQSTLLLGQARGAAISALVASELAVYEFTALQIKQAVVGHGKAQKK 120

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
           Q+  M++ L+      G DAADAL +A+CHA+
Sbjct: 121 QVQEMVQRLLSLPGIPGSDAADALGVAICHAH 152


>gi|58698539|ref|ZP_00373441.1| crossover junction endodeoxyribonuclease RuvC [Wolbachia
           endosymbiont of Drosophila ananassae]
 gi|58534955|gb|EAL59052.1| crossover junction endodeoxyribonuclease RuvC [Wolbachia
           endosymbiont of Drosophila ananassae]
          Length = 162

 Score =  133 bits (334), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 66/159 (41%), Positives = 101/159 (63%), Gaps = 1/159 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           ++IIG+DPG+ +TGW I+ V   +N+ F+  GTI +  +     RL  ++E L  VI  +
Sbjct: 2   VKIIGLDPGISKTGWAIISVNEKNNIEFLGGGTISTDGKLGTGERLHIIFEQLKKVISLY 61

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P EAAVE++FVNK+  ++L LG AR + IL+  + ++ ++EY  N +KK++ G GH DK
Sbjct: 62  SPNEAAVEKIFVNKNPKSSLTLGYARGVVILALKITKLTMNEYDANYVKKSITGNGHADK 121

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGY 162
            QI  M+K ++     K   AADALA+A+CHAY   S +
Sbjct: 122 DQIIFMVKQIVKNLNIKCHHAADALAVAICHAYTKGSCF 160


>gi|293603640|ref|ZP_06686061.1| crossover junction endoribonuclease subunit C [Achromobacter
           piechaudii ATCC 43553]
 gi|292818076|gb|EFF77136.1| crossover junction endoribonuclease subunit C [Achromobacter
           piechaudii ATCC 43553]
          Length = 182

 Score =  132 bits (333), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 68/152 (44%), Positives = 101/152 (66%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPGLRRTG+G++D  G  L +V+SGTIV     +LA RL  + + L +V ++ +
Sbjct: 1   MRVLGIDPGLRRTGFGVIDAEGSRLRYVASGTIVVPPALTLAERLKVILDNLREVARDTQ 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ AA+E VF+N +  +TL LGQAR  A+ + A + + V EY    IKKAV+G G   K+
Sbjct: 61  PDVAALEIVFLNTNPASTLLLGQARGAALCALADSSLAVHEYTALQIKKAVVGTGRAAKE 120

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
           Q+ MM++ L+        D+ADALA A+CHA+
Sbjct: 121 QVQMMVQHLLSLDGVPAPDSADALACAICHAH 152


>gi|262404191|ref|ZP_06080746.1| crossover junction endodeoxyribonuclease RuvC [Vibrio sp. RC586]
 gi|262349223|gb|EEY98361.1| crossover junction endodeoxyribonuclease RuvC [Vibrio sp. RC586]
          Length = 173

 Score =  132 bits (333), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 66/149 (44%), Positives = 98/149 (65%), Gaps = 1/149 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G +L ++ SG I +   Q L  RL Q+Y G++++I  ++P+
Sbjct: 4   ILGIDPGSRVTGYGVIRQQGRHLIYLGSGCIRTS-EQDLPLRLKQIYAGVSEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR  AI++   A +PV EYA   IK+AV+G G  DK Q+
Sbjct: 63  AFAIEQVFMAKNADSALKLGQARGSAIVAAVNAELPVYEYAARLIKQAVVGTGAADKSQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHA 155
             M++ ++        DAADAL +A+CHA
Sbjct: 123 QHMVQQMLKLPGKPQADAADALGVAICHA 151


>gi|258621407|ref|ZP_05716441.1| crossover junction endodeoxyribonuclease RuvC [Vibrio mimicus
           VM573]
 gi|258626835|ref|ZP_05721642.1| crossover junction endodeoxyribonuclease RuvC [Vibrio mimicus
           VM603]
 gi|262171189|ref|ZP_06038867.1| crossover junction endodeoxyribonuclease RuvC [Vibrio mimicus
           MB-451]
 gi|258580882|gb|EEW05824.1| crossover junction endodeoxyribonuclease RuvC [Vibrio mimicus
           VM603]
 gi|258586795|gb|EEW11510.1| crossover junction endodeoxyribonuclease RuvC [Vibrio mimicus
           VM573]
 gi|261892265|gb|EEY38251.1| crossover junction endodeoxyribonuclease RuvC [Vibrio mimicus
           MB-451]
          Length = 173

 Score =  132 bits (333), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 66/149 (44%), Positives = 98/149 (65%), Gaps = 1/149 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G +L ++ SG I +   Q L  RL Q+Y G++++I  ++P+
Sbjct: 4   ILGIDPGSRVTGYGVIRQQGRHLIYLGSGCIRTS-EQELPIRLKQIYAGVSEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR  AI++   A +PV EYA   IK+AV+G G  DK Q+
Sbjct: 63  AFAIEQVFMAKNADSALKLGQARGSAIVAAVNANLPVYEYAARLIKQAVVGTGAADKSQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHA 155
             M++ ++        DAADAL +A+CHA
Sbjct: 123 QHMVQQMLKLPGKPQADAADALGVAICHA 151


>gi|146328711|ref|YP_001210062.1| crossover junction endodeoxyribonuclease RuvC [Dichelobacter
           nodosus VCS1703A]
 gi|187611413|sp|A5EXG1|RUVC_DICNV RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|146232181|gb|ABQ13159.1| crossover junction endodeoxyribonuclease RuvC [Dichelobacter
           nodosus VCS1703A]
          Length = 176

 Score =  132 bits (333), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 66/158 (41%), Positives = 106/158 (67%), Gaps = 7/158 (4%)

Query: 6   RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVR---QSLAFRLCQLYEGLTDVIKN 62
           RI+GIDPG R TG+GI+DV G  + +V SG    C+R   Q +  RL  +++G+ ++++ 
Sbjct: 5   RILGIDPGSRITGYGIIDVRGTAIDYVDSG----CIRLATQLMPQRLMTIHQGIFELVQQ 60

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
           + P++ A+E +FV+K+  + LKLGQAR +AI +  L+ + ++EYA  +IK+AV+G G  D
Sbjct: 61  YHPQQFAIEAIFVHKNPNSALKLGQARGVAICAAVLSGLSINEYAAKSIKQAVVGKGGAD 120

Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           K Q+  M+K+L+        DAADALA+A+ HA+H  +
Sbjct: 121 KIQVQHMVKILLNRQGAIQSDAADALAVAITHAHHLQT 158


>gi|254000107|ref|YP_003052170.1| Holliday junction resolvase [Methylovorus sp. SIP3-4]
 gi|253986786|gb|ACT51643.1| crossover junction endodeoxyribonuclease RuvC [Methylovorus sp.
           SIP3-4]
          Length = 178

 Score =  132 bits (332), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 69/168 (41%), Positives = 106/168 (63%), Gaps = 6/168 (3%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVR-----QSLAFRLCQLYEGLTDV 59
           +RI+GIDPGLR TG+G+++  G+ L +++SGTI +        + L  RL  + +GL +V
Sbjct: 1   MRILGIDPGLRLTGFGVIEKTGEKLSYIASGTIKTTQGKGAEIEDLPSRLKIILDGLAEV 60

Query: 60  IKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVG 119
           I  + PE+ A+E+VFVN +  +TL LGQAR  AI +  +  +PV+EY    +K++V+G G
Sbjct: 61  IATYAPEQVAIEKVFVNVNPQSTLLLGQARGAAICAAVIQNLPVAEYTALQVKQSVVGNG 120

Query: 120 HGDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
           H  K+Q+  M+K L+        D+ADALA A+CHA H   G   +A+
Sbjct: 121 HAAKEQVQEMVKRLLKLPGVPKPDSADALACAICHA-HGGQGLGLLAT 167


>gi|332525532|ref|ZP_08401687.1| Holliday junction resolvase [Rubrivivax benzoatilyticus JA2]
 gi|332109097|gb|EGJ10020.1| Holliday junction resolvase [Rubrivivax benzoatilyticus JA2]
          Length = 191

 Score =  132 bits (332), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 69/154 (44%), Positives = 98/154 (63%), Gaps = 2/154 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTI--VSCVRQSLAFRLCQLYEGLTDVIKN 62
           +RI+GIDPGL+RTG+G++D  G  L +V+SG I      R  L  RL  ++EG+ +V+  
Sbjct: 1   MRILGIDPGLQRTGFGVIDADGPRLAYVASGVIDTAEAPRGDLPQRLKIIFEGVAEVVSR 60

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
           + P+ A+ E VFVN +  +TL LGQAR  A+ +   A +PV+EY    +KKAV G G   
Sbjct: 61  YEPQAASAEIVFVNTNPQSTLLLGQARGAALAALVSAGLPVAEYTAVQMKKAVTGHGLAS 120

Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
           K+QI  M++ L+      GKDAADAL IA+ HA+
Sbjct: 121 KEQIQEMVRRLLALPGVPGKDAADALGIAIAHAH 154


>gi|300692486|ref|YP_003753481.1| endodeoxyribonuclease, subunit C of RuvABC Holliday junction
           resolvasome [Ralstonia solanacearum PSI07]
 gi|299079546|emb|CBJ52224.1| endodeoxyribonuclease, subunit C of RuvABC Holliday junction
           resolvasome [Ralstonia solanacearum PSI07]
          Length = 181

 Score =  132 bits (332), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 67/156 (42%), Positives = 101/156 (64%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGLR TG+G+++  G  L +V+SGTI S     L  RL  LY+G++++++ +R
Sbjct: 1   MRILGIDPGLRTTGFGVLERHGHQLVYVASGTIKSDGNADLPSRLKTLYDGVSELVRIYR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ A++E+VFVN +  +TL LGQAR  AI       +PV EY    +K AV+G G  +K+
Sbjct: 61  PDCASIEKVFVNVNPQSTLLLGQARGAAICGLVSGDLPVFEYTALQLKLAVVGYGRANKE 120

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           Q+  M+  L+      G DAADAL +A+CHA+   +
Sbjct: 121 QVQDMVVRLLNLEGRPGSDAADALGVAICHAHGGET 156


>gi|241662012|ref|YP_002980372.1| Holliday junction resolvase [Ralstonia pickettii 12D]
 gi|240864039|gb|ACS61700.1| crossover junction endodeoxyribonuclease RuvC [Ralstonia pickettii
           12D]
          Length = 181

 Score =  132 bits (332), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 65/156 (41%), Positives = 100/156 (64%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGLR TG+G+++  G  L +V+SGTI S     L  RL  LY+G+++++  +R
Sbjct: 1   MRILGIDPGLRTTGFGVLERHGHKLVYVASGTIKSNGNADLPSRLKTLYDGVSELVSTYR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ A++E+VFVN +  +TL LGQAR   I       +PV EY    +K+AV+G G  +K 
Sbjct: 61  PDCASIEKVFVNVNPQSTLLLGQARGAVICGLMSGNLPVFEYTALQLKQAVVGYGRANKD 120

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           Q+  M+  L+  +   G DA+DAL +A+CHA+   +
Sbjct: 121 QVQEMVVRLLNLAGRPGADASDALGVAICHAHGGET 156


>gi|261211910|ref|ZP_05926197.1| crossover junction endodeoxyribonuclease RuvC [Vibrio sp. RC341]
 gi|260839260|gb|EEX65892.1| crossover junction endodeoxyribonuclease RuvC [Vibrio sp. RC341]
          Length = 173

 Score =  132 bits (331), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 65/149 (43%), Positives = 98/149 (65%), Gaps = 1/149 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G +L ++ SG I +   Q L  RL Q+Y G++++I  ++P+
Sbjct: 4   ILGIDPGSRVTGYGVIRQQGRHLIYLGSGCIRTS-EQELPLRLKQIYAGVSEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR  AI++   A +PV EYA   +K+AV+G G  DK Q+
Sbjct: 63  VFAIEQVFMAKNADSALKLGQARGSAIVAAVNAELPVYEYAARLVKQAVVGTGAADKSQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHA 155
             M++ ++        DAADAL +A+CHA
Sbjct: 123 QHMVQQMLKLPGKPQSDAADALGVAICHA 151


>gi|237748979|ref|ZP_04579459.1| crossover junction endodeoxyribonuclease ruvC [Oxalobacter
           formigenes OXCC13]
 gi|229380341|gb|EEO30432.1| crossover junction endodeoxyribonuclease ruvC [Oxalobacter
           formigenes OXCC13]
          Length = 181

 Score =  132 bits (331), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 63/152 (41%), Positives = 101/152 (66%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++I+GIDPGLR TG+GI+   G++L +++SGT+ +     L  RL  +++G++++I  ++
Sbjct: 1   MKILGIDPGLRTTGFGIIHKKGNSLVYIASGTVKTPAEAGLPLRLKTIFDGISEIIAEYQ 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ AA+E+VFVN +  +TL LGQAR  AI +   + + V E+    IK+AV+G G   KK
Sbjct: 61  PDCAAIEKVFVNVNPQSTLLLGQARGAAISALVASELAVYEFTALQIKQAVVGHGKAQKK 120

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
           Q+  M++ L+      G DAADAL  A+CHA+
Sbjct: 121 QVQEMVQRLLSLPGIPGSDAADALGAAICHAH 152


>gi|322420881|ref|YP_004200104.1| crossover junction endodeoxyribonuclease RuvC [Geobacter sp. M18]
 gi|320127268|gb|ADW14828.1| crossover junction endodeoxyribonuclease RuvC [Geobacter sp. M18]
          Length = 164

 Score =  132 bits (331), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 63/152 (41%), Positives = 98/152 (64%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R+TG+G++   G+ L  + +G I +   +    RL +++ GL+ VI  ++PE
Sbjct: 3   ILGIDPGSRKTGYGLISKQGNRLVHIDNGAIFTQSAKDFPQRLEKIFTGLSAVIAQYQPE 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             AVE VF+ K+A++ LKLGQAR  AI++     +PV EY    +K+AV+G G  +K Q+
Sbjct: 63  VVAVENVFLAKNAMSALKLGQARGAAIVAAVNVGLPVHEYTAMQVKQAVVGTGRAEKAQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHA 158
             M+K L+       +DA+DALA+A+CHA+ A
Sbjct: 123 QQMIKALLNLPEVAQEDASDALAVAICHAHSA 154


>gi|113866529|ref|YP_725018.1| Holliday junction resolvase [Ralstonia eutropha H16]
 gi|123033273|sp|Q0KEC1|RUVC_RALEH RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|113525305|emb|CAJ91650.1| crossover junction endodeoxyribonuclease RuvC [Ralstonia eutropha
           H16]
          Length = 181

 Score =  132 bits (331), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 68/156 (43%), Positives = 101/156 (64%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGLR TG+G+++  G+ L +V+SGTI S    +L  RL  LY+G+++V + + 
Sbjct: 1   MRILGIDPGLRTTGFGVIEKHGNKLAYVASGTIKSDGNSTLPERLKTLYDGISEVSRTYA 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ AA+E+VFVN +  +TL LGQAR  AI       +PV EY    +K AV+G G  +K 
Sbjct: 61  PDCAAIEKVFVNVNPQSTLLLGQARGAAICGLVGYGLPVFEYTALQLKVAVVGYGRANKA 120

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           Q+  M+  L+      G DAADAL +A+CHA  +++
Sbjct: 121 QVQEMVTRLLMLPGQPGSDAADALGVAICHANGSDT 156


>gi|114330309|ref|YP_746531.1| crossover junction endodeoxyribonuclease RuvC [Nitrosomonas
           eutropha C91]
 gi|122314645|sp|Q0AJA5|RUVC_NITEC RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|114307323|gb|ABI58566.1| crossover junction endodeoxyribonuclease RuvC [Nitrosomonas
           eutropha C91]
          Length = 178

 Score =  132 bits (331), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 72/167 (43%), Positives = 105/167 (62%), Gaps = 2/167 (1%)

Query: 3   KSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
           KSIRI+GIDPGLR TG+G+++  G  L ++ SG +V+  +  L  RL  + +GL ++I  
Sbjct: 6   KSIRILGIDPGLRITGFGVIEKNGSQLTYLGSGCVVT-EKSGLPDRLKTILDGLNEIILQ 64

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
            +PE+ AVEQVFVN +  +TL LGQAR  AI +  L  + V EY    IK++V+G GH  
Sbjct: 65  HQPEQVAVEQVFVNINPKSTLLLGQARGAAISAAVLHELSVYEYTALQIKQSVVGNGHAR 124

Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQD 169
           K+Q+  M+  L+        DAADALA A+CHA H  +G   ++ ++
Sbjct: 125 KEQVQEMVMRLLRLGERPRPDAADALACAICHA-HGGTGLLALSVRN 170


>gi|15641849|ref|NP_231481.1| Holliday junction resolvase [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121591338|ref|ZP_01678626.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae
           2740-80]
 gi|121730274|ref|ZP_01682650.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae V52]
 gi|147673791|ref|YP_001217381.1| Holliday junction resolvase [Vibrio cholerae O395]
 gi|153824055|ref|ZP_01976722.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae B33]
 gi|227081976|ref|YP_002810527.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae
           M66-2]
 gi|229508056|ref|ZP_04397561.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae BX
           330286]
 gi|229511705|ref|ZP_04401184.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae B33]
 gi|229518844|ref|ZP_04408287.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae RC9]
 gi|229607617|ref|YP_002878265.1| Holliday junction resolvase [Vibrio cholerae MJ-1236]
 gi|254848933|ref|ZP_05238283.1| holliday junction resolvase [Vibrio cholerae MO10]
 gi|255745393|ref|ZP_05419342.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholera CIRS
           101]
 gi|298498114|ref|ZP_07007921.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae MAK
           757]
 gi|20978754|sp|Q9KR00|RUVC_VIBCH RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|172047660|sp|A5F762|RUVC_VIBC3 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|254767487|sp|C3LNF0|RUVC_VIBCM RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|9656375|gb|AAF94995.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|121546802|gb|EAX56968.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae
           2740-80]
 gi|121627976|gb|EAX60537.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae V52]
 gi|126518427|gb|EAZ75650.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae B33]
 gi|146315674|gb|ABQ20213.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae
           O395]
 gi|227009864|gb|ACP06076.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae
           M66-2]
 gi|227013745|gb|ACP09955.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae
           O395]
 gi|229343533|gb|EEO08508.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae RC9]
 gi|229351670|gb|EEO16611.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae B33]
 gi|229355561|gb|EEO20482.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae BX
           330286]
 gi|229370272|gb|ACQ60695.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae
           MJ-1236]
 gi|254844638|gb|EET23052.1| holliday junction resolvase [Vibrio cholerae MO10]
 gi|255737223|gb|EET92619.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholera CIRS
           101]
 gi|297542447|gb|EFH78497.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae MAK
           757]
          Length = 173

 Score =  132 bits (331), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 67/152 (44%), Positives = 99/152 (65%), Gaps = 7/152 (4%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQS---LAFRLCQLYEGLTDVIKNW 63
           I+GIDPG R TG+G++   G +L ++ SG    C+R S   L  RL Q+Y G++++I  +
Sbjct: 4   ILGIDPGSRVTGYGVIRQQGRHLIYLGSG----CIRTSDLELPLRLKQIYAGVSEIITQF 59

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +P+  A+EQVF+ K+A + LKLGQAR  AI++   A +PV EYA   IK+AV+G G  DK
Sbjct: 60  QPDAFAIEQVFMAKNADSALKLGQARGSAIVAAVNAELPVYEYAARLIKQAVVGTGAADK 119

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHA 155
            Q+  M++ ++        DAADAL +A+CHA
Sbjct: 120 SQVQHMVQQMLKLPGKPQADAADALGVAICHA 151


>gi|225629965|ref|YP_002726756.1| crossover junction endodeoxyribonuclease RuvC [Wolbachia sp. wRi]
 gi|254767489|sp|C0R5C3|RUVC_WOLWR RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|225591946|gb|ACN94965.1| crossover junction endodeoxyribonuclease RuvC [Wolbachia sp. wRi]
          Length = 162

 Score =  132 bits (331), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 65/159 (40%), Positives = 101/159 (63%), Gaps = 1/159 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           ++IIG+DPG+ +TGW I+ +   +N+ F+  GTI +  +     RL  ++E L  VI  +
Sbjct: 2   VKIIGLDPGISKTGWAIISLNEKNNIEFLGGGTISTDGKLGTGERLHIIFEQLKKVISLY 61

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P EAAVE++FVNK+  ++L LG AR + IL+  + ++ ++EY  N +KK++ G GH DK
Sbjct: 62  SPNEAAVEKIFVNKNPKSSLTLGYARGVVILALKITKLTMNEYDANYVKKSITGNGHADK 121

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGY 162
            QI  M+K ++     K   AADALA+A+CHAY   S +
Sbjct: 122 DQIIFMVKQIVKNLNIKCHHAADALAVAICHAYTKGSCF 160


>gi|212635160|ref|YP_002311685.1| Holliday junction resolvase [Shewanella piezotolerans WP3]
 gi|226725476|sp|B8CNX9|RUVC_SHEPW RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|212556644|gb|ACJ29098.1| Crossover junction endodeoxyribonuclease RuvC [Shewanella
           piezotolerans WP3]
          Length = 173

 Score =  132 bits (331), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 68/156 (43%), Positives = 102/156 (65%), Gaps = 8/156 (5%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQS---LAFRLCQLYEGLTDVIKNW 63
           I+G+DPG R TG+G+++  G    +V SG    C+R S   L  RL Q+++GL+++I+ +
Sbjct: 4   ILGVDPGSRITGYGVINCVGRQQVYVGSG----CIRTSSDELPLRLKQIFDGLSEIIRQY 59

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +P+E A+E+VF+ K+A + LKLGQAR  AI++   A +PV+EY+   IK AV+G G   K
Sbjct: 60  QPDEFAIERVFMAKNADSALKLGQARGAAIVAATAANLPVAEYSATQIKSAVVGTGRAQK 119

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHAN 159
            Q+  M++ L+        DAADAL +AVCH YH N
Sbjct: 120 SQVQHMIQQLLKLPSAPQADAADALGVAVCH-YHTN 154


>gi|187927482|ref|YP_001897969.1| Holliday junction resolvase [Ralstonia pickettii 12J]
 gi|309779816|ref|ZP_07674571.1| crossover junction endodeoxyribonuclease RuvC [Ralstonia sp.
           5_7_47FAA]
 gi|238691843|sp|B2UFL4|RUVC_RALPJ RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|187724372|gb|ACD25537.1| crossover junction endodeoxyribonuclease RuvC [Ralstonia pickettii
           12J]
 gi|308921393|gb|EFP67035.1| crossover junction endodeoxyribonuclease RuvC [Ralstonia sp.
           5_7_47FAA]
          Length = 181

 Score =  131 bits (330), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 65/156 (41%), Positives = 99/156 (63%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGLR TG+G+++  G  L +V+SGTI S     L  RL  LY+G+++++  +R
Sbjct: 1   MRILGIDPGLRTTGFGVLERHGHKLVYVASGTIKSNGNADLPSRLKTLYDGVSELVSTYR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ A++E+VFVN +  +TL LGQAR   I       +PV EY    +K+AV+G G  +K 
Sbjct: 61  PDCASIEKVFVNVNPQSTLLLGQARGAVICGLMSGNLPVFEYTALQLKQAVVGYGRANKD 120

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           Q+  M+  L+      G DA+DAL +A+CHA+   +
Sbjct: 121 QVQEMVVRLLNLEGKPGADASDALGVAICHAHGGET 156


>gi|299067937|emb|CBJ39151.1| endodeoxyribonuclease, subunit C of RuvABC Holliday junction
           resolvasome [Ralstonia solanacearum CMR15]
          Length = 181

 Score =  131 bits (330), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 66/156 (42%), Positives = 100/156 (64%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGLR TG+G+++  G  L +V+SGTI S     L  RL  LY+G++++++ +R
Sbjct: 1   MRILGIDPGLRTTGFGVLERHGHQLVYVASGTIKSDGNADLPSRLKTLYDGVSELVRIYR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ A++E+VFVN +  +TL LGQAR   I       +PV EY    +K+AV+G G  +K 
Sbjct: 61  PDCASIEKVFVNVNPQSTLLLGQARGAVICGLMSGNLPVFEYTALQLKQAVVGYGRANKD 120

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           Q+  M+  L+      G DAADAL +A+CHA+   +
Sbjct: 121 QVQDMVVRLLNLEGRPGTDAADALGVAICHAHGGET 156


>gi|253997452|ref|YP_003049516.1| Holliday junction resolvase [Methylotenera mobilis JLW8]
 gi|253984131|gb|ACT48989.1| crossover junction endodeoxyribonuclease RuvC [Methylotenera
           mobilis JLW8]
          Length = 192

 Score =  131 bits (329), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 71/175 (40%), Positives = 107/175 (61%), Gaps = 12/175 (6%)

Query: 4   SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCV-----------RQSLAFRLCQL 52
           +IRI+GIDPGLR TG+G+++  G+ + +VSSGTI +             R+ L  RL  +
Sbjct: 7   AIRILGIDPGLRLTGFGVIEKIGEKITYVSSGTIKTASAKKSKVEGDPEREELPARLKVI 66

Query: 53  YEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIK 112
            +GL +VI  ++P + A+E+VFVN +  +TL LGQAR  AI +  +  + V+EY    +K
Sbjct: 67  LDGLFEVIDTYQPHQVAIEKVFVNVNPQSTLLLGQARGAAISAAVIRNLSVAEYTALQVK 126

Query: 113 KAVIGVGHGDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
           +AV+G GH  K+Q+  M+K L+        D+ADALA A+CHA H   G   +A+
Sbjct: 127 QAVVGNGHAQKEQVQEMVKRLLKLPAAPKPDSADALACAICHA-HGGQGLGLMAT 180


>gi|312797265|ref|YP_004030187.1| Crossover junction endodeoxyribonuclease ruvC [Burkholderia
           rhizoxinica HKI 454]
 gi|312169040|emb|CBW76043.1| Crossover junction endodeoxyribonuclease ruvC (EC 3.1.22.4)
           [Burkholderia rhizoxinica HKI 454]
          Length = 194

 Score =  131 bits (329), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 68/158 (43%), Positives = 101/158 (63%), Gaps = 4/158 (2%)

Query: 4   SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           ++RI+GIDPGLR TG+G++D  G  L +V+SG ++      L  RL  +++G+  +I+  
Sbjct: 14  TMRILGIDPGLRVTGFGVIDKHGHALTYVASG-VIRTANADLPSRLGTIFDGVATLIREH 72

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P++AA+E+VFVN +  +TL LGQAR  AI +    R+ V+EY    +K+AV+G G   K
Sbjct: 73  SPDQAAIEKVFVNVNPQSTLLLGQARGAAICALVSGRVSVAEYTALQLKQAVVGYGRATK 132

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSG 161
            Q+  M+  L+  S   G DAADAL +A+C   HANSG
Sbjct: 133 DQMQQMVVRLLNLSGLPGTDAADALGMAIC---HANSG 167


>gi|153217381|ref|ZP_01951132.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae
           1587]
 gi|153827625|ref|ZP_01980292.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae
           MZO-2]
 gi|153830581|ref|ZP_01983248.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae
           623-39]
 gi|229515227|ref|ZP_04404687.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae TMA
           21]
 gi|229520307|ref|ZP_04409733.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae TM
           11079-80]
 gi|229523865|ref|ZP_04413270.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae bv.
           albensis VL426]
 gi|229529130|ref|ZP_04418520.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae
           12129(1)]
 gi|254292162|ref|ZP_04962933.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae
           AM-19226]
 gi|297579366|ref|ZP_06941294.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae
           RC385]
 gi|124113599|gb|EAY32419.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae
           1587]
 gi|148873943|gb|EDL72078.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae
           623-39]
 gi|149737897|gb|EDM52802.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae
           MZO-2]
 gi|150421925|gb|EDN13901.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae
           AM-19226]
 gi|229332904|gb|EEN98390.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae
           12129(1)]
 gi|229337446|gb|EEO02463.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae bv.
           albensis VL426]
 gi|229342673|gb|EEO07665.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae TM
           11079-80]
 gi|229347932|gb|EEO12891.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae TMA
           21]
 gi|297536960|gb|EFH75793.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae
           RC385]
 gi|327484399|gb|AEA78806.1| Crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae
           LMA3894-4]
          Length = 173

 Score =  131 bits (329), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 67/152 (44%), Positives = 99/152 (65%), Gaps = 7/152 (4%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQS---LAFRLCQLYEGLTDVIKNW 63
           I+GIDPG R TG+G++   G +L ++ SG    C+R S   L  RL Q+Y G++++I  +
Sbjct: 4   ILGIDPGSRVTGYGVIRQQGRHLIYLGSG----CIRTSDLELPLRLKQIYAGVSEIITQF 59

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +P+  A+EQVF+ K+A + LKLGQAR  AI++   A +PV EYA   IK+AV+G G  DK
Sbjct: 60  QPDAFAIEQVFMAKNADSALKLGQARGSAIVAAVNADLPVYEYAARLIKQAVVGTGAADK 119

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHA 155
            Q+  M++ ++        DAADAL +A+CHA
Sbjct: 120 SQVQHMVQQMLKLPGKPQADAADALGVAICHA 151


>gi|33598083|ref|NP_885726.1| Holliday junction resolvase [Bordetella parapertussis 12822]
 gi|44888436|sp|Q7W4U0|RUVC_BORPA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|33566641|emb|CAE38851.1| crossover junction endodeoxyribonuclease [Bordetella parapertussis]
          Length = 182

 Score =  131 bits (329), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 69/152 (45%), Positives = 99/152 (65%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPGLRRTG+G++D  G  L +V+SGTIV     SL  RL  + + L +V +  R
Sbjct: 1   MRVLGIDPGLRRTGFGVIDAEGMRLRYVASGTIVVPPALSLPERLKVILDNLREVARETR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ AA+E VF+N +  +TL LGQAR  A+ + A + + V EY    IKKAV+G G   K+
Sbjct: 61  PDVAALEIVFLNTNPASTLLLGQARGAALCALADSALDVHEYTALQIKKAVVGTGRAAKE 120

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
           Q+ MM++ L+        D+ADALA A+CHA+
Sbjct: 121 QVQMMVQRLLSLDGTPAPDSADALACAICHAH 152


>gi|188591244|ref|YP_001795844.1| holliday junction resolvase [Cupriavidus taiwanensis LMG 19424]
 gi|238692934|sp|B2AH75|RUVC_CUPTR RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|170938138|emb|CAP63124.1| endodeoxyribonuclease, subunit C of RuvABC Holliday junction
           resolvasome [Cupriavidus taiwanensis LMG 19424]
          Length = 181

 Score =  130 bits (328), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 67/156 (42%), Positives = 100/156 (64%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGLR TG+G+++  G+ L +++SGTI S    +L  RL  LY+G+++V + + 
Sbjct: 1   MRILGIDPGLRTTGFGVIEKQGNKLAYIASGTIKSDGNANLPERLKTLYDGISEVSRTYA 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ AA+E+VFVN +  +TL LGQAR  AI       +PV EY    +K AV+G G  +K 
Sbjct: 61  PDCAAIEKVFVNVNPQSTLLLGQARGAAICGLVGYGLPVFEYTALQLKVAVVGYGRANKA 120

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           Q+  M+  L+      G DAADAL +A+CHA   ++
Sbjct: 121 QVQEMVTRLLMLPGQPGSDAADALGVAICHANGGDT 156


>gi|163855210|ref|YP_001629508.1| Holliday junction resolvase [Bordetella petrii DSM 12804]
 gi|226698746|sp|A9I8F5|RUVC_BORPD RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|163258938|emb|CAP41237.1| crossover junction endodeoxyribonuclease [Bordetella petrii]
          Length = 182

 Score =  130 bits (328), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 68/152 (44%), Positives = 100/152 (65%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPGLRRTG+G++D  G  L +V+SGTIV     +L  RL  + + L  V ++ R
Sbjct: 1   MRVLGIDPGLRRTGFGVIDAEGMRLRYVASGTIVVPPALALPERLKVILDNLRQVARDTR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ AA+E VF+N +  +TL LGQAR  A+ + A +++ V EY    IKKAV+G G   K+
Sbjct: 61  PDVAALEIVFLNTNPASTLLLGQARGAALCALADSQLAVHEYTALQIKKAVVGTGRAAKE 120

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
           Q+ MM++ L+        D+ADALA A+CHA+
Sbjct: 121 QVQMMVQRLLSLDGTPAPDSADALACAICHAH 152


>gi|258545753|ref|ZP_05705987.1| crossover junction endodeoxyribonuclease RuvC [Cardiobacterium
           hominis ATCC 15826]
 gi|258518998|gb|EEV87857.1| crossover junction endodeoxyribonuclease RuvC [Cardiobacterium
           hominis ATCC 15826]
          Length = 174

 Score =  130 bits (328), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 72/163 (44%), Positives = 113/163 (69%), Gaps = 7/163 (4%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVR---QSLAFRLCQLYEGLT 57
           M  S R++ IDPG R TG+GI+DV G  + +V SG    C+R   + +  RL  +++G+T
Sbjct: 1   MALSRRVLAIDPGSRVTGYGIIDVLGQEVRYVDSG----CIRLADEEMPLRLMMIHQGIT 56

Query: 58  DVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIG 117
           ++I+++RP+E A+E +FV+K+  + LKLGQAR +AI +  LA++PV+EYA  +IK+AV+G
Sbjct: 57  ELIRSYRPQEFAIEAIFVHKNPASALKLGQARGVAICAAVLAQLPVAEYAAKSIKQAVVG 116

Query: 118 VGHGDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
            G  +K Q+  M+K+L+  S     DAADALA+A+ HA+H  +
Sbjct: 117 KGGAEKTQVQHMVKILLNRSGVIQSDAADALAVALTHAHHLQT 159


>gi|118581083|ref|YP_902333.1| Holliday junction resolvase [Pelobacter propionicus DSM 2379]
 gi|166233278|sp|A1ASF5|RUVC_PELPD RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|118503793|gb|ABL00276.1| crossover junction endodeoxyribonuclease RuvC [Pelobacter
           propionicus DSM 2379]
          Length = 176

 Score =  130 bits (328), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 67/152 (44%), Positives = 96/152 (63%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPG R TG+GIV+ AG  L  V +G I +        RL  +++GLT VI  + 
Sbjct: 1   MRVLGIDPGSRITGYGIVEQAGSRLIHVDNGAIFTDSALDFPGRLKSIFDGLTTVIAEYE 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+E AVE VF++ +A + LKLGQAR  AI++   A +PV+EY    +K+AV+G G   K+
Sbjct: 61  PDEVAVENVFLSNNAQSALKLGQARGAAIVAAVHAGLPVAEYTALQVKQAVVGRGKAAKE 120

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
           Q+  ML  L+        DA+DALA+AVCH +
Sbjct: 121 QVQKMLTALLSLPEVAQADASDALAVAVCHLH 152


>gi|329888420|ref|ZP_08267018.1| crossover junction endodeoxyribonuclease RuvC [Brevundimonas
           diminuta ATCC 11568]
 gi|328846976|gb|EGF96538.1| crossover junction endodeoxyribonuclease RuvC [Brevundimonas
           diminuta ATCC 11568]
          Length = 170

 Score =  130 bits (328), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 74/155 (47%), Positives = 104/155 (67%)

Query: 3   KSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
           ++ RI+G+DPGLRRTGWG+++  G  L +++ G +    +   + RL  L E + +V   
Sbjct: 4   ETTRILGLDPGLRRTGWGVIESEGSRLRWIAHGVVAPDDKAPFSERLLHLLEQVGEVCAA 63

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
           +  +EAA+E+VFVN +  +TLKLG ARA  +L+PA A + V+EYAP  IKKAV+G G  D
Sbjct: 64  YDCDEAAIEEVFVNVNPASTLKLGHARAAVMLAPARAGLSVAEYAPTLIKKAVVGAGQAD 123

Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYH 157
           K QI  M+K L+P S     DAADALA+AV HA+H
Sbjct: 124 KSQIAFMIKRLLPASGEVKADAADALAVAVTHAHH 158


>gi|326315582|ref|YP_004233254.1| crossover junction endodeoxyribonuclease RuvC [Acidovorax avenae
           subsp. avenae ATCC 19860]
 gi|323372418|gb|ADX44687.1| crossover junction endodeoxyribonuclease RuvC [Acidovorax avenae
           subsp. avenae ATCC 19860]
          Length = 182

 Score =  130 bits (328), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 70/164 (42%), Positives = 104/164 (63%), Gaps = 3/164 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTI--VSCVRQSLAFRLCQLYEGLTDVIKN 62
           +RI+GIDPGL+ TG+G+VDV G +L +V+SGTI         L  RL  L++G+T+V   
Sbjct: 1   MRILGIDPGLQTTGFGVVDVDGHHLSYVASGTIRTTGAALGDLPGRLKILFDGITEVAAR 60

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
           ++P+ A VE VFVN +  +TL LGQAR   + +   +++PV+EY    +KKAV+G G   
Sbjct: 61  YQPDAATVEIVFVNVNPQSTLLLGQARGACVTALVASQLPVAEYTALQMKKAVVGHGRAA 120

Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
           K Q+  M++ L+      G DAADAL +A+ HA HA +   ++A
Sbjct: 121 KSQVQEMVRRLLQLPGLPGSDAADALGLAITHA-HAGAAMGRLA 163


>gi|120609527|ref|YP_969205.1| Holliday junction resolvase [Acidovorax citrulli AAC00-1]
 gi|166231572|sp|A1TKE3|RUVC_ACIAC RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|120587991|gb|ABM31431.1| crossover junction endodeoxyribonuclease RuvC [Acidovorax citrulli
           AAC00-1]
          Length = 182

 Score =  130 bits (328), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 68/154 (44%), Positives = 99/154 (64%), Gaps = 2/154 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTI--VSCVRQSLAFRLCQLYEGLTDVIKN 62
           +RI+GIDPGL+ TG+G+VDV G +L +V+SGTI         L  RL  L++G+T+V   
Sbjct: 1   MRILGIDPGLQTTGFGVVDVDGHHLSYVASGTIRTTGAALGDLPGRLKILFDGITEVAAR 60

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
           ++P+ A VE VFVN +  +TL LGQAR   + +   +R+PV+EY    +KKAV+G G   
Sbjct: 61  YQPDVATVEIVFVNVNPQSTLLLGQARGACVTALVASRLPVAEYTALQMKKAVVGHGRAA 120

Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
           K Q+  M++ L+      G DAADAL +A+ HA+
Sbjct: 121 KSQVQEMVRRLLQLPGLPGTDAADALGLAITHAH 154


>gi|332968141|gb|EGK07224.1| crossover junction endoribonuclease subunit C [Kingella kingae ATCC
           23330]
          Length = 204

 Score =  130 bits (328), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 72/160 (45%), Positives = 102/160 (63%), Gaps = 10/160 (6%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M K+IRI+GIDPG R TG+GI+D  G    +V+SG I +  +  LA R+  +  G+ ++I
Sbjct: 27  MNKTIRILGIDPGSRSTGFGIIDWVGREPIYVASGCIQTIPKDELAGRVSIIVRGIAELI 86

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             +RP +AAVEQVFVN +  ATL LGQAR  AI +  L  +PV EY    +K++V+G G 
Sbjct: 87  DTYRPNQAAVEQVFVNVNPAATLMLGQARGAAIAALVLRDLPVYEYTALQVKQSVVGQGK 146

Query: 121 GDKKQI-HMMLKML----MPESFFKGKDAADALAIAVCHA 155
             K+Q+ HM++KML     P++     DAAD LA+A+ H 
Sbjct: 147 AAKEQVQHMVVKMLNLSGTPQA-----DAADGLAVAITHG 181


>gi|222112137|ref|YP_002554401.1| holliday junction resolvase [Acidovorax ebreus TPSY]
 gi|254767470|sp|B9MFQ0|RUVC_DIAST RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|221731581|gb|ACM34401.1| crossover junction endodeoxyribonuclease RuvC [Acidovorax ebreus
           TPSY]
          Length = 186

 Score =  130 bits (327), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 71/167 (42%), Positives = 105/167 (62%), Gaps = 7/167 (4%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQS------LAFRLCQLYEGLTD 58
           +RI+GIDPGL+ TG+G+VDV G  L +V+SGTI +  R +      L  RL  L++G+++
Sbjct: 1   MRILGIDPGLQTTGFGVVDVDGHRLRYVASGTIRTTGRATGLALGDLPGRLKVLFDGVSE 60

Query: 59  VIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGV 118
           V   ++P  AAVE +FVN +  +TL LGQAR  A+ +   A +PV+EY    +KKAV+G 
Sbjct: 61  VAARYQPSTAAVEIIFVNVNPQSTLLLGQARGAALTALVNANLPVAEYTALQMKKAVVGH 120

Query: 119 GHGDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
           G   K Q+  M++ L+      G DAADAL +A+ HA HA +   ++
Sbjct: 121 GRAAKSQVQEMVRRLLELPGLPGTDAADALGLAITHA-HAGAAMARV 166


>gi|163751783|ref|ZP_02159000.1| crossover junction endodeoxyribonuclease RuvC [Shewanella benthica
           KT99]
 gi|161328347|gb|EDP99507.1| crossover junction endodeoxyribonuclease RuvC [Shewanella benthica
           KT99]
          Length = 173

 Score =  130 bits (327), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 63/157 (40%), Positives = 102/157 (64%), Gaps = 7/157 (4%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVR---QSLAFRLCQLYEGLTDVIKNW 63
           I+GIDPG R TG+G++   G +  ++ SG    C+R   +  A+RL Q+++G++++I+ +
Sbjct: 4   ILGIDPGSRITGYGVIKRNGRHPLYLGSG----CIRTNSEDFAYRLKQIFDGISEIIRQY 59

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +P E A+E+VF+ K+A + LKLGQAR  AI++   A +PV EY+   IK AV+G G   K
Sbjct: 60  QPTEFAIERVFMAKNADSALKLGQARGAAIVAATNADLPVGEYSATQIKSAVVGTGRAQK 119

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
            Q+  M++ ++  S     DAADAL +A+CH + + S
Sbjct: 120 SQVQHMVQQILKLSACPQADAADALGVAICHFHTSQS 156


>gi|103485831|ref|YP_615392.1| crossover junction endodeoxyribonuclease RuvC [Sphingopyxis
           alaskensis RB2256]
 gi|123253592|sp|Q1GWB3|RUVC_SPHAL RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|98975908|gb|ABF52059.1| crossover junction endodeoxyribonuclease RuvC [Sphingopyxis
           alaskensis RB2256]
          Length = 156

 Score =  130 bits (327), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 65/151 (43%), Positives = 95/151 (62%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+G+DP L  TGWG++ V G  +  +++G I +  + +L  RL  L   L  VI +  P+
Sbjct: 3   ILGLDPSLSCTGWGLIRVEGSRISHIANGQIKTDAKAALPDRLVHLDTALAAVIADHAPK 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
            AAVE+VFVN +  +TLKL  AR + +L  A   + V++YAP  +KKA++G G   K Q+
Sbjct: 63  CAAVEEVFVNDNPQSTLKLAHARGVVLLGCARGGLTVTQYAPRLVKKAIVGTGGAAKGQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYH 157
             ML +L+P +   G DAADALA+A+CHA H
Sbjct: 123 QAMLGVLLPGTKVAGPDAADALAVAICHANH 153


>gi|260772518|ref|ZP_05881434.1| crossover junction endodeoxyribonuclease RuvC [Vibrio metschnikovii
           CIP 69.14]
 gi|260611657|gb|EEX36860.1| crossover junction endodeoxyribonuclease RuvC [Vibrio metschnikovii
           CIP 69.14]
          Length = 173

 Score =  130 bits (327), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 65/149 (43%), Positives = 96/149 (64%), Gaps = 1/149 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I +   Q    RL Q+Y G++++I  ++P+
Sbjct: 4   ILGIDPGSRITGYGVIRQQGRQLIYLGSGCIRTS-EQEFPLRLKQIYAGVSEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR  AI++   A +PV EYA   IK+AV+G G  DK Q+
Sbjct: 63  AFAIEQVFMAKNADSALKLGQARGSAIVAAVNADLPVYEYAARLIKQAVVGTGGADKTQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHA 155
             M++ ++        DAADAL +A+CHA
Sbjct: 123 QHMVQQMLKLPAKPQADAADALGVAICHA 151


>gi|148263483|ref|YP_001230189.1| Holliday junction resolvase [Geobacter uraniireducens Rf4]
 gi|189046068|sp|A5G9Y4|RUVC_GEOUR RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|146396983|gb|ABQ25616.1| crossover junction endodeoxyribonuclease RuvC [Geobacter
           uraniireducens Rf4]
          Length = 171

 Score =  130 bits (327), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 66/162 (40%), Positives = 103/162 (63%), Gaps = 1/162 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++I+GIDPG R TG+G++   G+ L  V +G I +   +    RL ++Y GL ++I+ +R
Sbjct: 1   MKILGIDPGSRITGYGVISKEGNRLIHVDNGAIFTDKAKDFPARLERIYRGLAEIIETYR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  AVE +F + +  + LKLGQAR  AI++  +A +PV EY    +K+AV+G G   K+
Sbjct: 61  PDAVAVENIFFSNNVQSALKLGQARGAAIVAGVIAGLPVFEYTALQVKQAVVGNGKAAKQ 120

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHAN-SGYYKI 165
           Q+  M+K+L+       +DA+DALA+AVCHA  +  SG  KI
Sbjct: 121 QVQQMIKVLLNLPEIAQEDASDALAVAVCHANSSVLSGMLKI 162


>gi|42520047|ref|NP_965962.1| crossover junction endodeoxyribonuclease RuvC [Wolbachia
           endosymbiont of Drosophila melanogaster]
 gi|59798790|sp|Q73IL5|RUVC_WOLPM RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|42409784|gb|AAS13896.1| crossover junction endodeoxyribonuclease RuvC [Wolbachia
           endosymbiont of Drosophila melanogaster]
          Length = 162

 Score =  130 bits (327), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 64/159 (40%), Positives = 100/159 (62%), Gaps = 1/159 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           ++IIG+DPG+ +TGW I+ +   +N+ F+  GTI +  +     RL  ++E L  VI  +
Sbjct: 2   VKIIGLDPGISKTGWAIISLNEKNNIEFLGGGTISTDGKLGTGERLHIIFEQLKKVISLY 61

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P EAAVE++FVNK+  ++L LG AR + IL+  + ++ ++EY  N +KK++ G GH DK
Sbjct: 62  SPNEAAVEKIFVNKNPKSSLTLGYARGVVILALKITKLTMNEYDANYVKKSITGNGHADK 121

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGY 162
            QI  M+K ++     K    ADALA+A+CHAY   S +
Sbjct: 122 DQIIFMVKQIVKNLSIKCHHVADALAVAICHAYTKGSCF 160


>gi|88811438|ref|ZP_01126693.1| Crossover junction endodeoxyribonuclease RuvC [Nitrococcus mobilis
           Nb-231]
 gi|88791327|gb|EAR22439.1| Crossover junction endodeoxyribonuclease RuvC [Nitrococcus mobilis
           Nb-231]
          Length = 173

 Score =  130 bits (326), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 71/151 (47%), Positives = 97/151 (64%), Gaps = 1/151 (0%)

Query: 6   RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           RI+GIDPGLR TG+G++ V G  L +V SG I+      L  RL  L+E L  V+  + P
Sbjct: 9   RILGIDPGLRITGYGVITVNGSRLAYVGSG-IIRIPDGPLPERLNILFEQLAHVLAQYEP 67

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
             AAVEQVFV+++  + LKLG AR  AI + A A + V+EY P  IK+A++G G+ DK+Q
Sbjct: 68  VTAAVEQVFVHRNPSSALKLGHARGAAICACAQAGLTVAEYTPRRIKQALVGTGNADKQQ 127

Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
           +  M++ L+        DAADALA AVCHA+
Sbjct: 128 VQYMVQSLLGLRGNLRVDAADALATAVCHAH 158


>gi|197106546|ref|YP_002131923.1| RuvC [Phenylobacterium zucineum HLK1]
 gi|196479966|gb|ACG79494.1| RuvC [Phenylobacterium zucineum HLK1]
          Length = 170

 Score =  130 bits (326), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 63/135 (46%), Positives = 88/135 (65%)

Query: 3   KSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
           + +RI+G+DPGLRRTGWG+V   G  L  V+ G I    +   A RL  L  G+  +I  
Sbjct: 5   RPVRILGLDPGLRRTGWGVVACEGARLSHVAHGVIAPPDKLPFAERLLVLLSGIEAIIAE 64

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
             P+EAAVE+ FVN +A + LKLG ARA+A+++PA A +PV+EYA   +KKAV+G G  D
Sbjct: 65  HAPDEAAVEETFVNDNARSALKLGHARAMALVAPARAGLPVAEYAATVVKKAVVGTGGAD 124

Query: 123 KKQIHMMLKMLMPES 137
           K Q+  M+  L+P +
Sbjct: 125 KAQVGWMIARLLPAA 139


>gi|262394695|ref|YP_003286549.1| crossover junction endodeoxyribonuclease RuvC [Vibrio sp. Ex25]
 gi|262338289|gb|ACY52084.1| crossover junction endodeoxyribonuclease RuvC [Vibrio sp. Ex25]
          Length = 173

 Score =  130 bits (326), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 68/152 (44%), Positives = 99/152 (65%), Gaps = 7/152 (4%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQS---LAFRLCQLYEGLTDVIKNW 63
           I+GIDPG R TG+G++   G +L ++ SG    C+R S   L  RL Q+Y G+T++I  +
Sbjct: 4   ILGIDPGSRITGYGVIRQNGRHLQYLGSG----CIRTSEKELPGRLKQIYAGVTEIITQF 59

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +P+  A+EQVF+ K+A + LKLGQAR  AI++   A +PV EYA   IK+AV+G G  DK
Sbjct: 60  QPDVFAIEQVFMAKNADSALKLGQARGSAIVAAVNAELPVYEYAARLIKQAVVGTGGADK 119

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHA 155
            Q+  M++ ++        DAADAL +A+CHA
Sbjct: 120 AQVQHMVQQMLKLPAKPQADAADALGVAICHA 151


>gi|323527309|ref|YP_004229462.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia sp.
           CCGE1001]
 gi|323384311|gb|ADX56402.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia sp.
           CCGE1001]
          Length = 180

 Score =  130 bits (326), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 63/156 (40%), Positives = 100/156 (64%), Gaps = 1/156 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGLR TG+G++D +G  L +V+SG ++      L  RL  +++G++ +I+   
Sbjct: 1   MRILGIDPGLRVTGFGVIDQSGHTLSYVASG-VIKTADADLPSRLGTIFDGISTLIRQHA 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+++A+E+VFVN +  +TL LGQAR  AI       +PV+EY    +K+AV+G G   K+
Sbjct: 60  PDQSAIEKVFVNVNPQSTLLLGQARGAAICGLVAGGVPVAEYTALQLKQAVVGYGRATKE 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           Q+  M+  L+  S     DAADAL +A+CHA+   +
Sbjct: 120 QMQQMVVRLLSLSGVPSTDAADALGMAICHAHGGTT 155


>gi|121595949|ref|YP_987845.1| Holliday junction resolvase [Acidovorax sp. JS42]
 gi|166231573|sp|A1WBZ4|RUVC_ACISJ RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|120608029|gb|ABM43769.1| crossover junction endodeoxyribonuclease RuvC [Acidovorax sp. JS42]
          Length = 186

 Score =  130 bits (326), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 70/167 (41%), Positives = 105/167 (62%), Gaps = 7/167 (4%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQS------LAFRLCQLYEGLTD 58
           +RI+GIDPGL+ TG+G+VDV G  L +V+SGT+ +  R +      L  RL  L++G+++
Sbjct: 1   MRILGIDPGLQTTGFGVVDVDGHRLRYVASGTVRTTGRATGLALGDLPGRLKVLFDGVSE 60

Query: 59  VIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGV 118
           V   ++P  AAVE +FVN +  +TL LGQAR  A+ +   A +PV+EY    +KKAV+G 
Sbjct: 61  VAARYQPSTAAVEIIFVNVNPQSTLLLGQARGAALTALVNANLPVAEYTALQMKKAVVGH 120

Query: 119 GHGDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
           G   K Q+  M++ L+      G DAADAL +A+ HA HA +   ++
Sbjct: 121 GRAAKSQVQEMVRRLLELPGLPGTDAADALGLAITHA-HAGAAMARV 166


>gi|114563353|ref|YP_750866.1| crossover junction endodeoxyribonuclease RuvC [Shewanella
           frigidimarina NCIMB 400]
 gi|122299597|sp|Q081N7|RUVC_SHEFN RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|114334646|gb|ABI72028.1| crossover junction endodeoxyribonuclease RuvC [Shewanella
           frigidimarina NCIMB 400]
          Length = 173

 Score =  130 bits (326), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 66/157 (42%), Positives = 97/157 (61%), Gaps = 7/157 (4%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQS---LAFRLCQLYEGLTDVIKNW 63
           I+G+DPG R TG+G++   G    ++ SG    C+R S   L  RL Q+Y GL ++I  +
Sbjct: 4   ILGVDPGSRITGYGVIQCQGRQQIYLGSG----CIRTSADDLPQRLQQIYAGLCEIITQY 59

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +P+E A+E+VF+ K+A + LKLGQAR  AI++   A +PV+EY+   IK AV+G G   K
Sbjct: 60  KPDEFAIERVFMAKNADSALKLGQARGAAIVAATCAGLPVAEYSATQIKSAVVGTGRAQK 119

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
            Q+  M+K L+        DAADAL +A+CH +   S
Sbjct: 120 TQVQHMIKQLLKLPASPQADAADALGVAICHFHTYQS 156


>gi|33602976|ref|NP_890536.1| Holliday junction resolvase [Bordetella bronchiseptica RB50]
 gi|44888439|sp|Q7WGB7|RUVC_BORBR RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|33568607|emb|CAE34365.1| crossover junction endodeoxyribonuclease [Bordetella bronchiseptica
           RB50]
          Length = 182

 Score =  129 bits (325), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 68/152 (44%), Positives = 99/152 (65%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPGLRRTG+G++D  G  L +V+SGTIV     +L  RL  + + L +V +  R
Sbjct: 1   MRVLGIDPGLRRTGFGVIDAEGMRLRYVASGTIVVPPALALPERLKVILDNLREVARETR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ AA+E VF+N +  +TL LGQAR  A+ + A + + V EY    IKKAV+G G   K+
Sbjct: 61  PDVAALEIVFLNTNPASTLLLGQARGAALCALADSALDVHEYTALQIKKAVVGTGRAAKE 120

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
           Q+ MM++ L+        D+ADALA A+CHA+
Sbjct: 121 QVQMMVQRLLSLDGTPAPDSADALACAICHAH 152


>gi|254418020|ref|ZP_05031744.1| crossover junction endodeoxyribonuclease RuvC [Brevundimonas sp.
           BAL3]
 gi|196184197|gb|EDX79173.1| crossover junction endodeoxyribonuclease RuvC [Brevundimonas sp.
           BAL3]
          Length = 172

 Score =  129 bits (325), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 65/133 (48%), Positives = 88/133 (66%)

Query: 3   KSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
           + +RIIG+DPGLRRTGWG++   G  L +V+ G +        + RL  L+E L  +  +
Sbjct: 4   EPVRIIGLDPGLRRTGWGVIVSDGARLRWVAHGVVAPPEAAPFSERLLFLFEALGTICAD 63

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
              EEAAVE+VFVN +  +TLKLG ARA  +L+PA   + V+EY+PN IKKAV+G GH D
Sbjct: 64  HGCEEAAVEEVFVNVNPSSTLKLGHARAAVMLAPAKLGLAVAEYSPNLIKKAVVGAGHAD 123

Query: 123 KKQIHMMLKMLMP 135
           K QI  M+K L+P
Sbjct: 124 KSQIAFMIKRLLP 136


>gi|317402226|gb|EFV82815.1| crossover junction endodeoxyribonuclease ruvC [Achromobacter
           xylosoxidans C54]
          Length = 182

 Score =  129 bits (325), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 67/152 (44%), Positives = 100/152 (65%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPGLRRTG+G++D  G  L +V+SGTIV     +L+ RL  + + L  V ++ +
Sbjct: 1   MRVLGIDPGLRRTGFGVIDADGPRLRYVASGTIVVPPALTLSERLKVILDNLRQVARDTQ 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ AA+E VF+N +  +TL LGQAR  A+ + A + + V EY    IKKAV+G G   K+
Sbjct: 61  PDVAALEIVFLNTNPASTLLLGQARGAALCALADSSLAVHEYTALQIKKAVVGTGRAAKE 120

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
           Q+ MM++ L+        D+ADALA A+CHA+
Sbjct: 121 QVQMMVQHLLALDGTPAPDSADALACAICHAH 152


>gi|269967684|ref|ZP_06181734.1| crossover junction endodeoxyribonuclease RuvC [Vibrio alginolyticus
           40B]
 gi|269827771|gb|EEZ82055.1| crossover junction endodeoxyribonuclease RuvC [Vibrio alginolyticus
           40B]
          Length = 173

 Score =  129 bits (325), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 68/152 (44%), Positives = 99/152 (65%), Gaps = 7/152 (4%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQS---LAFRLCQLYEGLTDVIKNW 63
           I+GIDPG R TG+G++   G +L ++ SG    C+R S   L  RL Q+Y G+T++I  +
Sbjct: 4   ILGIDPGSRITGYGVIRQNGRHLQYLGSG----CIRTSEKELPGRLKQIYAGVTEIITQF 59

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +P+  A+EQVF+ K+A + LKLGQAR  AI++   A +PV EYA   IK+AV+G G  DK
Sbjct: 60  QPDVFAIEQVFMAKNADSALKLGQARGSAIVAAVNAELPVFEYAARLIKQAVVGTGGADK 119

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHA 155
            Q+  M++ ++        DAADAL +A+CHA
Sbjct: 120 AQVQHMVQQMLKLPAKPQADAADALGVAICHA 151


>gi|212704985|ref|ZP_03313113.1| hypothetical protein DESPIG_03053 [Desulfovibrio piger ATCC 29098]
 gi|212671649|gb|EEB32132.1| hypothetical protein DESPIG_03053 [Desulfovibrio piger ATCC 29098]
          Length = 170

 Score =  129 bits (325), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 65/154 (42%), Positives = 97/154 (62%), Gaps = 9/154 (5%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTI--VSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++G+DPG +RTGWGI+      L  V  G I   S   +  + RL  +Y  L DV+  +R
Sbjct: 8   VLGVDPGSQRTGWGIIAEQSGVLRLVDCGIIRTTSSGEKEFSQRLAVIYRQLADVVGRYR 67

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+EAA+EQVF  K+A + LKLGQAR +A+ + A  R+PVS+Y P  +KK+V+G G  +K+
Sbjct: 68  PQEAAIEQVFTAKNAASALKLGQARGVAVAACAAHRVPVSDYEPTLVKKSVVGTGRAEKE 127

Query: 125 QIHMMLKMLMPESFFKGK----DAADALAIAVCH 154
           Q+  M++ L+     +G+    D  DALA+A+CH
Sbjct: 128 QVAFMVRRLLN---VRGEGWALDTTDALAVAICH 158


>gi|117923792|ref|YP_864409.1| Holliday junction endonuclease RuvC [Magnetococcus sp. MC-1]
 gi|187611447|sp|A0L4W0|RUVC_MAGSM RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|117607548|gb|ABK43003.1| Holliday junction endonuclease RuvC [Magnetococcus sp. MC-1]
          Length = 180

 Score =  129 bits (325), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 65/150 (43%), Positives = 94/150 (62%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           IR+IGIDPG   TGWG++D  G     V  GTI    ++ L  RL Q++  L  +I+  +
Sbjct: 7   IRVIGIDPGSNVTGWGVIDGLGQRQQVVEYGTIRLDGKEPLPMRLHQIHAQLVSLIQRLQ 66

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P E AVE+VFV+++  + LKLG AR  AI++ A   +P++EY    +KKAV+G G  +K 
Sbjct: 67  PHEMAVEEVFVSQNVQSALKLGHARGAAIVAGAQMGLPIAEYTAMQVKKAVVGYGRAEKN 126

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCH 154
           Q+  M++ML+       +DAAD LAIA+CH
Sbjct: 127 QMQEMMRMLLNLDKKPAQDAADGLAIAMCH 156


>gi|160896927|ref|YP_001562509.1| Holliday junction resolvase [Delftia acidovorans SPH-1]
 gi|238687185|sp|A9BUL6|RUVC_DELAS RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|160362511|gb|ABX34124.1| crossover junction endodeoxyribonuclease RuvC [Delftia acidovorans
           SPH-1]
          Length = 182

 Score =  129 bits (325), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 71/164 (43%), Positives = 103/164 (62%), Gaps = 3/164 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTI--VSCVRQSLAFRLCQLYEGLTDVIKN 62
           +RI+GIDPGL+ TG+G++DV G  L +V+SGTI         L  RL  L++G+++V   
Sbjct: 1   MRILGIDPGLQTTGFGVIDVDGHRLAYVASGTIRTTGIALGDLPGRLKLLFDGISEVASR 60

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
           ++P+ +AVE VFVN +  +TL LGQAR  A+ +   A +PV+EY    +KKA+ G G   
Sbjct: 61  YQPDTSAVEIVFVNVNPQSTLLLGQARGAALTALVNAGLPVAEYTALQMKKAMTGHGRAA 120

Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
           K QI  M++ L+      G DAADAL +A+ HA HA +   K+A
Sbjct: 121 KSQIQEMVRRLLQLPGLPGTDAADALGLAITHA-HAGAAMSKMA 163


>gi|325267304|ref|ZP_08133966.1| crossover junction endoribonuclease subunit C [Kingella
           denitrificans ATCC 33394]
 gi|324981241|gb|EGC16891.1| crossover junction endoribonuclease subunit C [Kingella
           denitrificans ATCC 33394]
          Length = 176

 Score =  129 bits (325), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 67/160 (41%), Positives = 97/160 (60%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M K IRI+GIDPG R TG+G++D  G    +V+SG I +     LA R+  +  G+ D++
Sbjct: 1   MSKPIRILGIDPGSRITGFGVIDWHGREPVYVASGCIKTLPNDELAGRIGMIVRGIGDLV 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             +RP +AAVEQVFVN +  ATL LGQAR  A+ +  L  +PV EY    +K++V+G G 
Sbjct: 61  AEYRPNQAAVEQVFVNVNPAATLMLGQARGAAVAALVLRDLPVYEYTALQVKQSVVGQGK 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
             K+Q+  M+  ++  S     DAAD LA+A+ HA  +  
Sbjct: 121 AAKEQVQHMVVQMLGLSGTPQADAADGLAVAITHALRSQG 160


>gi|261252499|ref|ZP_05945072.1| crossover junction endodeoxyribonuclease RuvC [Vibrio orientalis
           CIP 102891]
 gi|260935890|gb|EEX91879.1| crossover junction endodeoxyribonuclease RuvC [Vibrio orientalis
           CIP 102891]
          Length = 173

 Score =  129 bits (324), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 67/152 (44%), Positives = 100/152 (65%), Gaps = 7/152 (4%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQS---LAFRLCQLYEGLTDVIKNW 63
           I+GIDPG R TG+G++   G +L ++ SG    C+R S   L  RL Q+Y G++++I  +
Sbjct: 4   ILGIDPGSRITGYGVIRQTGRHLQYLGSG----CIRTSEKELPGRLKQIYAGVSEIITQF 59

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +P+  A+EQVF+ ++A + LKLGQAR  AI++   A +PVSEYA   IK+AV G G  DK
Sbjct: 60  QPDVFAIEQVFMARNADSALKLGQARGSAIVAAVNADLPVSEYAARLIKQAVTGTGGADK 119

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHA 155
           +Q+  M++ ++        DAADAL +A+CHA
Sbjct: 120 EQVQHMVQQMLKLPARPQADAADALGVAICHA 151


>gi|294141123|ref|YP_003557101.1| crossover junction endodeoxyribonuclease RuvC [Shewanella violacea
           DSS12]
 gi|293327592|dbj|BAJ02323.1| crossover junction endodeoxyribonuclease RuvC [Shewanella violacea
           DSS12]
          Length = 173

 Score =  129 bits (324), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 63/157 (40%), Positives = 101/157 (64%), Gaps = 7/157 (4%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQS---LAFRLCQLYEGLTDVIKNW 63
           I+GIDPG R TG+G++   G +  ++ SG    C+R S    A+RL Q+++G++++I+ +
Sbjct: 4   ILGIDPGSRITGYGVIKRNGRHPIYLGSG----CIRTSSDDFAYRLKQIFDGVSEIIRQY 59

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +P E A+E+VF+ K+A + LKLGQAR  AI++     +PV EY+   IK AV+G G   K
Sbjct: 60  QPTEFAIERVFMAKNADSALKLGQARGAAIVAATNVDLPVGEYSATQIKSAVVGTGKAQK 119

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
            Q+  M++ ++  S     DAADAL +A+CH + + S
Sbjct: 120 SQVQHMVQQILKLSASPQADAADALGVAICHFHTSQS 156


>gi|33594300|ref|NP_881944.1| Holliday junction resolvase [Bordetella pertussis Tohama I]
 gi|44888432|sp|Q7VTU0|RUVC_BORPE RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|33564375|emb|CAE43680.1| crossover junction endodeoxyribonuclease [Bordetella pertussis
           Tohama I]
 gi|332383711|gb|AEE68558.1| Holliday junction resolvase [Bordetella pertussis CS]
          Length = 182

 Score =  129 bits (324), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 68/152 (44%), Positives = 99/152 (65%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPGLRRTG+G++D  G  L +V+SGTIV     +L  RL  + + L +V +  R
Sbjct: 1   MRVLGIDPGLRRTGFGVIDAEGMRLRYVASGTIVVPPALALPERLKVILDNLREVARETR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ AA+E VF+N +  +TL LGQAR  A+ + A + + V EY    IKKAV+G G   K+
Sbjct: 61  PDVAALEIVFLNTNPASTLLLGQARGAALCALADSALDVHEYTALQIKKAVMGTGRAAKE 120

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
           Q+ MM++ L+        D+ADALA A+CHA+
Sbjct: 121 QVQMMVQRLLSLDGTPAPDSADALACAICHAH 152


>gi|187479250|ref|YP_787275.1| Holliday junction resolvase [Bordetella avium 197N]
 gi|123738521|sp|Q2KVY8|RUVC_BORA1 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|115423837|emb|CAJ50388.1| crossover junction endodeoxyribonuclease [Bordetella avium 197N]
          Length = 181

 Score =  129 bits (324), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 67/152 (44%), Positives = 99/152 (65%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGLRRTG+G+VD  G  L +++SGTIV     +LA RL  + + L +V +  R
Sbjct: 1   MRILGIDPGLRRTGFGVVDAEGSRLRYIASGTIVVPPDLALAQRLKVILDNLREVARETR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ AA+E VF+N +  +TL LG AR  A+ + A + + V EY    IKK+ +G G   K+
Sbjct: 61  PDVAALEIVFLNANPSSTLLLGHARGAALCALAESGLDVHEYTALQIKKSTVGTGRAAKE 120

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
           Q+ MM++ L+  +     D+ADALA A+CHA+
Sbjct: 121 QVQMMVQHLLSLNGTPAPDSADALACAICHAH 152


>gi|260779159|ref|ZP_05888051.1| crossover junction endodeoxyribonuclease RuvC [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260605323|gb|EEX31618.1| crossover junction endodeoxyribonuclease RuvC [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 173

 Score =  129 bits (323), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 67/152 (44%), Positives = 100/152 (65%), Gaps = 7/152 (4%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQS---LAFRLCQLYEGLTDVIKNW 63
           I+GIDPG R TG+G++   G +L ++ SG    C+R S   L  RL Q+Y G+T++I  +
Sbjct: 4   ILGIDPGSRITGYGVIRQTGRHLHYLGSG----CIRTSEKELPGRLKQIYAGVTEIITQF 59

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +P+  A+EQVF+ ++A + LKLGQAR  AI++   A +PV EYA   IK+AV+G G  DK
Sbjct: 60  QPDVFAIEQVFMARNADSALKLGQARGSAIVAAVNADLPVYEYAARLIKQAVVGTGGADK 119

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHA 155
           +Q+  M++ ++        DAADAL +A+CHA
Sbjct: 120 EQVQHMVQSMLKLPAKPQADAADALGVAICHA 151


>gi|186477302|ref|YP_001858772.1| Holliday junction resolvase [Burkholderia phymatum STM815]
 gi|238691293|sp|B2JGU2|RUVC_BURP8 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|184193761|gb|ACC71726.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
           phymatum STM815]
          Length = 180

 Score =  129 bits (323), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 64/152 (42%), Positives = 98/152 (64%), Gaps = 1/152 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGLR TG+G++D +G  L +V+SG ++      L  RL  ++EG++ +I+   
Sbjct: 1   MRILGIDPGLRVTGFGVIDQSGHQLTYVTSG-VIKTADADLPTRLGTIFEGISTLIRQHA 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ +A+E+VFVN +  +TL LGQAR  AI       +PV+EY    +K+AV+G G   K+
Sbjct: 60  PDHSAIEKVFVNVNPQSTLLLGQARGAAICGLVSGGVPVAEYTALQLKQAVVGYGRATKE 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
           Q+  M+  L+  S     DAADAL +A+CHA+
Sbjct: 120 QMQQMVVRLLCLSGIPSTDAADALGMAICHAH 151


>gi|27365487|ref|NP_761015.1| Holliday junction resolvase [Vibrio vulnificus CMCP6]
 gi|29611845|sp|Q8DAN6|RUVC_VIBVU RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|27361635|gb|AAO10542.1| crossover junction endodeoxyribonuclease RuvC [Vibrio vulnificus
           CMCP6]
          Length = 173

 Score =  129 bits (323), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 68/152 (44%), Positives = 98/152 (64%), Gaps = 7/152 (4%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQS---LAFRLCQLYEGLTDVIKNW 63
           I+GIDPG R TG+G++   G +L ++ SG    C+R S   L  RL Q+Y G+T++I  +
Sbjct: 4   ILGIDPGSRVTGYGVIRQNGRHLQYLGSG----CIRTSEKDLPGRLKQIYAGVTEIITQF 59

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +P+  A+EQVF+ K+A + LKLGQAR  AI+S     +PV EYA   IK+AV+G G  DK
Sbjct: 60  QPDAFAIEQVFMAKNADSALKLGQARGAAIVSAVNHDLPVYEYAARLIKQAVVGTGGADK 119

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHA 155
            Q+  M++ ++        DAADAL +A+CHA
Sbjct: 120 AQVQHMVQHMLKLPAKPQADAADALGVAICHA 151


>gi|157962185|ref|YP_001502219.1| Holliday junction resolvase [Shewanella pealeana ATCC 700345]
 gi|189046081|sp|A8H547|RUVC_SHEPA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|157847185|gb|ABV87684.1| crossover junction endodeoxyribonuclease RuvC [Shewanella pealeana
           ATCC 700345]
          Length = 173

 Score =  129 bits (323), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 68/165 (41%), Positives = 104/165 (63%), Gaps = 8/165 (4%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQS---LAFRLCQLYEGLTDVIKNW 63
           I+G+DPG R TG+G++   G    +V SG    C+R S   L  RL Q+++GL+++I+ +
Sbjct: 4   ILGVDPGSRITGYGVIKCVGRQQVYVGSG----CIRTSSDELPLRLKQIFDGLSEIIRQY 59

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +P+E A+E+VF+ K+A + LKLGQAR  AI++   A +PV+EY+   IK AV+G G   K
Sbjct: 60  QPDEFAIERVFMAKNADSALKLGQARGAAIVAATAANLPVAEYSATQIKSAVVGTGRAQK 119

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
            Q+  M++ L+        DAADAL +AVCH YH +     +A +
Sbjct: 120 TQVQHMIQQLLKLPSAPQADAADALGVAVCH-YHTSQSLVALAGR 163


>gi|225025770|ref|ZP_03714962.1| hypothetical protein EIKCOROL_02674 [Eikenella corrodens ATCC
           23834]
 gi|224941467|gb|EEG22676.1| hypothetical protein EIKCOROL_02674 [Eikenella corrodens ATCC
           23834]
          Length = 178

 Score =  128 bits (322), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 68/160 (42%), Positives = 101/160 (63%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M+K IRI+GIDPG R TG+G++DV G +  +V+SG I +     LA R+  + + + ++I
Sbjct: 1   MQKPIRILGIDPGSRVTGFGVIDVLGQSQRYVASGCIKTIPGDELAGRIGIIVQHIGEII 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             ++P +AAVEQVFVN +  ATL LGQAR  A+ +  L  +PV EY    +K+AV+G G 
Sbjct: 61  DTYQPNQAAVEQVFVNVNPAATLMLGQARGAAVAALVLRGLPVYEYTALQVKQAVVGQGK 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
             K+Q+  M+  ++  S     DAAD LA+A+ HA   +S
Sbjct: 121 AAKEQVQHMVVQMLKLSGKPQADAADGLAVALTHALRNHS 160


>gi|311104200|ref|YP_003977053.1| crossover junction endodeoxyribonuclease RuvC [Achromobacter
           xylosoxidans A8]
 gi|310758889|gb|ADP14338.1| crossover junction endodeoxyribonuclease RuvC [Achromobacter
           xylosoxidans A8]
          Length = 182

 Score =  128 bits (322), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 66/152 (43%), Positives = 100/152 (65%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPGLRRTG+G++D  G  L +V+SGTIV     +L+ RL  + + L  V ++ +
Sbjct: 1   MRVLGIDPGLRRTGFGVIDADGPRLRYVASGTIVVPPALALSERLKVILDNLRQVARDTQ 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ AA+E +F+N +  +TL LGQAR  A+ + A + + V EY    IKKAV+G G   K+
Sbjct: 61  PDVAALEIIFLNTNPASTLLLGQARGAALCALADSSLSVHEYTALQIKKAVVGTGRAAKE 120

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
           Q+ MM++ L+        D+ADALA A+CHA+
Sbjct: 121 QVQMMVQHLLALDGAPAPDSADALACAICHAH 152


>gi|157363107|ref|YP_001469874.1| crossover junction endodeoxyribonuclease RuvC [Thermotoga lettingae
           TMO]
 gi|167012683|sp|A8F3S6|RUVC_THELT RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|157313711|gb|ABV32810.1| crossover junction endodeoxyribonuclease RuvC [Thermotoga lettingae
           TMO]
          Length = 162

 Score =  128 bits (322), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 65/149 (43%), Positives = 96/149 (64%), Gaps = 1/149 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I G+DPG    G+G++ V+G++   VS GTI +  +Q++A RL  LYE L++VI N++P 
Sbjct: 3   IFGVDPGFGILGYGVLSVSGNSFQHVSHGTIQTEKQQNIALRLKVLYEELSNVIDNFKPS 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E++F +++    + +G+AR I +L  A   IPV EY P+ IKKAV G G   KK +
Sbjct: 63  EIAMEKLFFSRNITTAISVGEARGIVLLLAAQRNIPVFEYTPHEIKKAVTGSGKASKKDV 122

Query: 127 HMMLKMLMP-ESFFKGKDAADALAIAVCH 154
             M+K+L+  +   K  DAAD LAIA CH
Sbjct: 123 QQMIKILLNLKELPKPDDAADGLAIAWCH 151


>gi|73540192|ref|YP_294712.1| Holliday junction resolvase [Ralstonia eutropha JMP134]
 gi|97274889|sp|Q475R5|RUVC_RALEJ RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|72117605|gb|AAZ59868.1| Crossover junction endodeoxyribonuclease RuvC [Ralstonia eutropha
           JMP134]
          Length = 181

 Score =  128 bits (322), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 65/156 (41%), Positives = 99/156 (63%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGLR TG+G+++  G+ L +++SGTI S     L  RL  L++G+++V + + 
Sbjct: 1   MRILGIDPGLRTTGFGVLEKHGNKLSYIASGTIKSNGETDLPARLKTLFDGISEVARTYT 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ AA+E+VFVN +  +TL LGQAR  AI       +PV EY    +K AV+G G  +K+
Sbjct: 61  PDCAAIEKVFVNVNPQSTLLLGQARGAAICGLVGQGLPVFEYTALQLKVAVVGYGRANKE 120

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           Q+  M+  L+        DAADAL +A+CHA   ++
Sbjct: 121 QVQEMVMRLLSLPGRPSTDAADALGVAICHANGGDT 156


>gi|94264073|ref|ZP_01287872.1| Crossover junction endodeoxyribonuclease RuvC [delta
           proteobacterium MLMS-1]
 gi|93455489|gb|EAT05679.1| Crossover junction endodeoxyribonuclease RuvC [delta
           proteobacterium MLMS-1]
          Length = 154

 Score =  128 bits (321), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 63/153 (41%), Positives = 99/153 (64%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+G+DPG R TG+GI++  G+ L FV+ G I +   +++  RL  ++ GL +VI   +
Sbjct: 1   MRILGVDPGSRLTGYGIIEQRGNLLAFVACGVIRAEKAKTMPERLLLIHRGLDEVIACHQ 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P++AAVE +F   +  + LKLGQAR + IL+     +PV+EY P  +K+AV G G   K+
Sbjct: 61  PQQAAVEDIFTAVNPRSALKLGQARGVIILTLCRHGLPVAEYTPRMVKQAVAGYGQASKE 120

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYH 157
           Q+  M++ L+  +    +DAADALA+A+C A H
Sbjct: 121 QVQQMVRALLKLNANPSQDAADALAVAICRANH 153


>gi|37680471|ref|NP_935080.1| Holliday junction resolvase [Vibrio vulnificus YJ016]
 gi|320155870|ref|YP_004188249.1| crossover junction endodeoxyribonuclease RuvC [Vibrio vulnificus
           MO6-24/O]
 gi|44888368|sp|Q7MJ75|RUVC_VIBVY RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|37199219|dbj|BAC95051.1| crossover junction endodeoxyribonuclease RuvC [Vibrio vulnificus
           YJ016]
 gi|319931182|gb|ADV86046.1| crossover junction endodeoxyribonuclease RuvC [Vibrio vulnificus
           MO6-24/O]
          Length = 173

 Score =  128 bits (321), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 68/152 (44%), Positives = 98/152 (64%), Gaps = 7/152 (4%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQS---LAFRLCQLYEGLTDVIKNW 63
           I+GIDPG R TG+G++   G +L ++ SG    C+R S   L  RL Q+Y G+T++I  +
Sbjct: 4   ILGIDPGSRVTGYGVIRQNGRHLQYLGSG----CIRTSEKDLPGRLKQIYAGVTEIITQF 59

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +P+  A+EQVF+ K+A + LKLGQAR  AI+S     +PV EYA   IK+AV+G G  DK
Sbjct: 60  QPDVFAIEQVFMAKNADSALKLGQARGAAIVSAVNHDLPVYEYAARLIKQAVVGTGGADK 119

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHA 155
            Q+  M++ ++        DAADAL +A+CHA
Sbjct: 120 AQVQHMVQHMLKLPAKPQADAADALGVAICHA 151


>gi|28897822|ref|NP_797427.1| Holliday junction resolvase [Vibrio parahaemolyticus RIMD 2210633]
 gi|153839739|ref|ZP_01992406.1| crossover junction endodeoxyribonuclease RuvC [Vibrio
           parahaemolyticus AQ3810]
 gi|260361819|ref|ZP_05774836.1| crossover junction endodeoxyribonuclease RuvC [Vibrio
           parahaemolyticus K5030]
 gi|260876982|ref|ZP_05889337.1| crossover junction endodeoxyribonuclease RuvC [Vibrio
           parahaemolyticus AN-5034]
 gi|260898719|ref|ZP_05907215.1| crossover junction endodeoxyribonuclease RuvC [Vibrio
           parahaemolyticus Peru-466]
 gi|260901354|ref|ZP_05909749.1| crossover junction endodeoxyribonuclease RuvC [Vibrio
           parahaemolyticus AQ4037]
 gi|31076903|sp|Q87QV1|RUVC_VIBPA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|28806035|dbj|BAC59311.1| crossover junction endodeoxyribonuclease RuvC [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|149746737|gb|EDM57725.1| crossover junction endodeoxyribonuclease RuvC [Vibrio
           parahaemolyticus AQ3810]
 gi|308089510|gb|EFO39205.1| crossover junction endodeoxyribonuclease RuvC [Vibrio
           parahaemolyticus Peru-466]
 gi|308093877|gb|EFO43572.1| crossover junction endodeoxyribonuclease RuvC [Vibrio
           parahaemolyticus AN-5034]
 gi|308109589|gb|EFO47129.1| crossover junction endodeoxyribonuclease RuvC [Vibrio
           parahaemolyticus AQ4037]
 gi|308113338|gb|EFO50878.1| crossover junction endodeoxyribonuclease RuvC [Vibrio
           parahaemolyticus K5030]
 gi|328473205|gb|EGF44053.1| Holliday junction resolvase [Vibrio parahaemolyticus 10329]
          Length = 173

 Score =  128 bits (321), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 68/152 (44%), Positives = 99/152 (65%), Gaps = 7/152 (4%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQS---LAFRLCQLYEGLTDVIKNW 63
           I+GIDPG R TG+G++   G +L ++ SG    C+R S   L  RL Q+Y G+T++I  +
Sbjct: 4   ILGIDPGSRITGYGVIRQQGRHLQYLGSG----CIRTSEKELPGRLKQIYAGVTEIITQF 59

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +P+  A+EQVF+ K+A + LKLGQAR  AI++   A +PV EYA   IK+AV+G G  DK
Sbjct: 60  QPDVFAIEQVFMAKNADSALKLGQARGSAIVAAVNADLPVYEYAARLIKQAVVGTGGADK 119

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHA 155
            Q+  M++ ++        DAADAL +A+CHA
Sbjct: 120 VQVQHMVQHMLKLPAKPQADAADALGVAICHA 151


>gi|302384292|ref|YP_003820115.1| crossover junction endodeoxyribonuclease RuvC [Brevundimonas
           subvibrioides ATCC 15264]
 gi|302194920|gb|ADL02492.1| crossover junction endodeoxyribonuclease RuvC [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 179

 Score =  128 bits (321), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 74/150 (49%), Positives = 100/150 (66%)

Query: 6   RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           RI+G+DPGLRRTGWG+V   G  L +++ G +       L+ RL  L E + +V      
Sbjct: 12  RILGLDPGLRRTGWGVVVAEGSRLRWIAHGVVTPPETAPLSERLLWLLEKVGEVCAAHDC 71

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
           +EAA+E+VFVN +  +TLKLG ARA  +L+PA A + V+EY+PN IKKAV+G GH DK Q
Sbjct: 72  DEAAIEEVFVNVNPSSTLKLGHARAAVMLAPARAGLSVAEYSPNLIKKAVVGAGHADKTQ 131

Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHA 155
           I  M+K L+P +     DAADALA+A+ HA
Sbjct: 132 IAFMVKRLLPSAGDVKADAADALAVAITHA 161


>gi|167623850|ref|YP_001674144.1| Holliday junction resolvase [Shewanella halifaxensis HAW-EB4]
 gi|189046080|sp|B0TSA5|RUVC_SHEHH RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|167353872|gb|ABZ76485.1| crossover junction endodeoxyribonuclease RuvC [Shewanella
           halifaxensis HAW-EB4]
          Length = 173

 Score =  128 bits (321), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 67/154 (43%), Positives = 101/154 (65%), Gaps = 8/154 (5%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQS---LAFRLCQLYEGLTDVIKNW 63
           I+G+DPG R TG+G+++  G    +V SG    C+R S   L  RL Q+++GL+++I+ +
Sbjct: 4   ILGVDPGSRITGYGVINCVGRQQIYVGSG----CIRTSSDELPIRLKQIFDGLSEIIRQY 59

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +P+E A+E+VF+ K+A + LKLGQAR  AI++   A +PV+EY+   IK AV+G G   K
Sbjct: 60  QPDEFAIERVFMAKNADSALKLGQARGAAIVAATAANLPVAEYSATQIKSAVVGTGRAQK 119

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYH 157
            Q+  M++ L+        DAADAL +AVCH YH
Sbjct: 120 AQVQHMIQQLLKLPSAPQADAADALGVAVCH-YH 152


>gi|307826388|ref|ZP_07656590.1| crossover junction endodeoxyribonuclease RuvC [Methylobacter
           tundripaludum SV96]
 gi|307732565|gb|EFO03440.1| crossover junction endodeoxyribonuclease RuvC [Methylobacter
           tundripaludum SV96]
          Length = 165

 Score =  128 bits (321), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 63/156 (40%), Positives = 103/156 (66%), Gaps = 1/156 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPG R TG+GI++ +     +++SG+I          RL Q+++G+ DV++ ++
Sbjct: 1   MRILGIDPGSRITGYGIIEESSRGYKYIASGSI-HIKADYFPDRLKQIFDGILDVVERYQ 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           PE+ A+EQVF++K+A + LKLGQAR  AI +     +PV EYA   +K+AV+G G  +K 
Sbjct: 60  PEQMAIEQVFMHKNADSALKLGQARGAAICAFQTTGLPVFEYAARQVKQAVVGKGSAEKT 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           Q+  M+K+L+        DA+DAL I++CHA++  +
Sbjct: 120 QVQHMVKILLNIQGELQIDASDALGISICHAHYQQT 155


>gi|260768876|ref|ZP_05877810.1| crossover junction endodeoxyribonuclease RuvC [Vibrio furnissii CIP
           102972]
 gi|260616906|gb|EEX42091.1| crossover junction endodeoxyribonuclease RuvC [Vibrio furnissii CIP
           102972]
 gi|315180570|gb|ADT87484.1| Holliday junction resolvase [Vibrio furnissii NCTC 11218]
          Length = 173

 Score =  128 bits (321), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 67/152 (44%), Positives = 99/152 (65%), Gaps = 7/152 (4%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQS---LAFRLCQLYEGLTDVIKNW 63
           I+GIDPG R TG+G++   G +L ++ SG    C+R S   L  RL Q+Y G++++I  +
Sbjct: 4   ILGIDPGSRITGYGVIRQQGRHLQYLGSG----CIRTSEKDLPLRLKQIYAGVSEIITQF 59

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +PE  A+EQVF+ K+A + LKLGQAR  AI++   A +PV EYA   IK+AV+G G  +K
Sbjct: 60  QPEVFAIEQVFMAKNADSALKLGQARGSAIVAAVNADLPVFEYAARLIKQAVVGNGGAEK 119

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHA 155
            Q+  M++ ++        DAADAL +A+CHA
Sbjct: 120 AQVQHMVQQMLKLPAKPQADAADALGVAICHA 151


>gi|254787342|ref|YP_003074771.1| Holliday junction resolvase [Teredinibacter turnerae T7901]
 gi|259495695|sp|C5BQT6|RUVC_TERTT RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|237683498|gb|ACR10762.1| crossover junction endodeoxyribonuclease RuvC [Teredinibacter
           turnerae T7901]
          Length = 177

 Score =  127 bits (320), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 65/153 (42%), Positives = 99/153 (64%), Gaps = 4/153 (2%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTI----VSCVRQSLAFRLCQLYEGLTDVIKN 62
           I+G+DPG R+ G+GI++  G  L +V+SG +       V   LA RL  +++ L+++I+ 
Sbjct: 4   ILGVDPGSRKMGYGIINATGSRLGYVASGVVRIPQPLLVADCLAERLKVIFDSLSEIIEQ 63

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
           ++P+E A+E VF+ K A + LKLGQAR  AI++     +PVSEY    +K+AV+G G  D
Sbjct: 64  YQPQEFAIENVFMAKSAGSALKLGQARGAAIVAAVNKDLPVSEYEARKVKQAVVGTGAAD 123

Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAIAVCHA 155
           K Q+  M+  L+  S    +DAADALA+A+CHA
Sbjct: 124 KLQVQHMVCTLLKLSKAPAEDAADALAVAICHA 156


>gi|326405392|ref|YP_004285474.1| crossover junction endodeoxyribonuclease RuvC [Acidiphilium
           multivorum AIU301]
 gi|325052254|dbj|BAJ82592.1| crossover junction endodeoxyribonuclease RuvC [Acidiphilium
           multivorum AIU301]
          Length = 169

 Score =  127 bits (320), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 73/152 (48%), Positives = 105/152 (69%)

Query: 6   RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           RIIGIDPGLR TG+GI+D  G+ L  V+ G I +    ++A RL  L   L  ++  + P
Sbjct: 8   RIIGIDPGLRFTGFGIIDADGNRLRHVADGVIATDGAAAVAERLHTLDAALARLLATYAP 67

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
           + AAVE+ +VN++A ATLKLG AR +A+L+PA A I V+EY   T+K+AV+G G  +K Q
Sbjct: 68  DHAAVEETYVNRNATATLKLGYARGVALLAPARAGIAVAEYGAKTVKRAVVGTGAAEKDQ 127

Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYH 157
           + +M++ L+P +     DAADALA+A+CHA+H
Sbjct: 128 VALMVRRLLPGAAITRADAADALAVAICHAHH 159


>gi|294788095|ref|ZP_06753339.1| crossover junction endodeoxyribonuclease RuvC [Simonsiella muelleri
           ATCC 29453]
 gi|294484388|gb|EFG32071.1| crossover junction endodeoxyribonuclease RuvC [Simonsiella muelleri
           ATCC 29453]
          Length = 179

 Score =  127 bits (320), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 65/155 (41%), Positives = 98/155 (63%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M + +R++GIDPG R TG+GI+D+ G    +V+SG I +     LA R+  + + + ++I
Sbjct: 3   MSRPVRVLGIDPGSRTTGFGIIDLVGREYQYVASGCIRTIPNDELAGRIGVIVQHIDEII 62

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
           + +RP +AA+EQVFVN +  ATL LGQAR  AI +  L  +PV EY    +K+AV+G G 
Sbjct: 63  ETYRPNQAAIEQVFVNVNPKATLMLGQARGAAIAALVLRGLPVHEYTALQVKQAVVGQGK 122

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHA 155
             K+Q+  M+  ++  S     DAAD LA+A+ HA
Sbjct: 123 AAKEQVQHMVVNMLKLSGTPQADAADGLAVALTHA 157


>gi|319943010|ref|ZP_08017293.1| crossover junction endoribonuclease subunit C [Lautropia mirabilis
           ATCC 51599]
 gi|319743552|gb|EFV95956.1| crossover junction endoribonuclease subunit C [Lautropia mirabilis
           ATCC 51599]
          Length = 170

 Score =  127 bits (320), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 68/152 (44%), Positives = 97/152 (63%), Gaps = 1/152 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGLR TG+G++D  GD + +V+SG I S   Q L  RL +L++G+ +++K +R
Sbjct: 1   MRILGIDPGLRTTGFGLIDTRGDAMRYVASGVIRSGEGQ-LPERLGRLHQGIIELVKEYR 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P  A  E VFVN +  +TL LGQAR  AI +     +PV EY    IK+AV+G G   K+
Sbjct: 60  PTVAVCEIVFVNVNPKSTLLLGQARGAAIGAMVSTGLPVHEYTALQIKQAVVGYGRATKE 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
           Q+  M+K ++        DAADALA A+CH +
Sbjct: 120 QVQEMVKRILTLPGLPSTDAADALACAICHNH 151


>gi|121609894|ref|YP_997701.1| Holliday junction resolvase [Verminephrobacter eiseniae EF01-2]
 gi|166233309|sp|A1WM26|RUVC_VEREI RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|121554534|gb|ABM58683.1| crossover junction endodeoxyribonuclease RuvC [Verminephrobacter
           eiseniae EF01-2]
          Length = 182

 Score =  127 bits (320), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 67/154 (43%), Positives = 98/154 (63%), Gaps = 2/154 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTI--VSCVRQSLAFRLCQLYEGLTDVIKN 62
           +RI+GIDPGL+ TG+G+VD+ G  L +V+SGTI   S     L  RL  L++G+T++   
Sbjct: 1   MRILGIDPGLQTTGFGVVDIDGQQLRYVASGTIRTTSLALGDLPGRLKILFDGITELAAR 60

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
           ++P+ AAVE VFVN +  +TL LGQAR   I +   + +PV+EY    +KKAV+G G   
Sbjct: 61  YQPDAAAVEIVFVNVNPQSTLLLGQARGACITALVASHLPVAEYTALQMKKAVVGHGRAA 120

Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
           K Q+  M++ L+      G DAAD L +A+ HA+
Sbjct: 121 KSQVQEMVRRLLHLPALPGTDAADGLGLAITHAH 154


>gi|145298296|ref|YP_001141137.1| Holliday junction resolvase [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|166231576|sp|A4SKG7|RUVC_AERS4 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|142851068|gb|ABO89389.1| crossover junction endodeoxyribonuclease RuvC [Aeromonas
           salmonicida subsp. salmonicida A449]
          Length = 173

 Score =  127 bits (320), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 66/165 (40%), Positives = 104/165 (63%), Gaps = 8/165 (4%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQ---SLAFRLCQLYEGLTDVIKNW 63
           I+GIDPG R TG+G++ +      ++ SG    C+R     L  RL Q+Y+G++++I  +
Sbjct: 4   ILGIDPGSRITGYGVIRIVAGKAEYLGSG----CIRTDFGELPSRLKQVYDGVSEIITQF 59

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +P+E A+E+VF+ ++A + LKLGQAR  AI++   A +PVSEY+   IK+AV+G G   K
Sbjct: 60  KPDEFAIERVFMARNADSALKLGQARGSAIVAAVNALLPVSEYSATQIKQAVVGTGGAAK 119

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
           +Q+  M+  L+  S     DAADAL +A+CH +H      K+A +
Sbjct: 120 EQVQHMVTHLLKLSATPQADAADALGVAICH-FHTRQSLIKMAGR 163


>gi|255067254|ref|ZP_05319109.1| crossover junction endodeoxyribonuclease RuvC [Neisseria sicca ATCC
           29256]
 gi|255048405|gb|EET43869.1| crossover junction endodeoxyribonuclease RuvC [Neisseria sicca ATCC
           29256]
          Length = 180

 Score =  127 bits (320), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 67/155 (43%), Positives = 98/155 (63%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           ++KS+RI+GIDPG R TG+GI+DV G    +V+SG I +     LA R+  +   + +++
Sbjct: 3   VQKSVRILGIDPGSRVTGFGIIDVCGREHFYVASGCIKTPPNAPLAERIAVIARHIREIV 62

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
           + +RP +AAVEQVFVN +  ATL LGQAR  A+    +  +PV EY    +K+AV+G G 
Sbjct: 63  QQYRPHQAAVEQVFVNVNPAATLMLGQARGAALAVLVMEGLPVFEYTALQVKQAVVGKGK 122

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHA 155
             K+Q+  M+  ++  S     DAAD LAIA+ HA
Sbjct: 123 AAKEQVQHMVVQMLSLSGTPQSDAADGLAIALTHA 157


>gi|20807634|ref|NP_622805.1| Holliday junction resolvasome endonuclease subunit
           [Thermoanaerobacter tengcongensis MB4]
 gi|22096143|sp|Q8RAN4|RUVC_THETN RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|20516177|gb|AAM24409.1| Holliday junction resolvasome endonuclease subunit
           [Thermoanaerobacter tengcongensis MB4]
          Length = 165

 Score =  127 bits (319), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 60/156 (38%), Positives = 98/156 (62%), Gaps = 1/156 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPG+   G+G+V+   +    +  G I +      AFRL  LY+GL D+IK +R
Sbjct: 1   MRVLGIDPGIATLGYGVVEYKNNKFSPIVYGAITTDAGVDKAFRLYTLYKGLEDIIKLYR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           PE  A+E++F NK++   + +G+ R I+IL+   + + V EY P  +K+AV+G G  +K+
Sbjct: 61  PEIVAIEELFYNKNSKTVITIGEVRGISILAAVNSGVKVYEYTPLQVKQAVVGYGRAEKQ 120

Query: 125 QIHMMLKMLMP-ESFFKGKDAADALAIAVCHAYHAN 159
           Q+  M+K+L+  +   K  D ADALA+A+CH +  N
Sbjct: 121 QVQQMVKVLLNLDEIPKPDDVADALAVAICHCHSNN 156


>gi|153832503|ref|ZP_01985170.1| crossover junction endodeoxyribonuclease RuvC [Vibrio harveyi HY01]
 gi|156973888|ref|YP_001444795.1| Holliday junction resolvase [Vibrio harveyi ATCC BAA-1116]
 gi|269963128|ref|ZP_06177463.1| crossover junction endodeoxyribonuclease RuvC [Vibrio harveyi 1DA3]
 gi|166233310|sp|A7N1J2|RUVC_VIBHB RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|148871298|gb|EDL70170.1| crossover junction endodeoxyribonuclease RuvC [Vibrio harveyi HY01]
 gi|156525482|gb|ABU70568.1| hypothetical protein VIBHAR_01598 [Vibrio harveyi ATCC BAA-1116]
 gi|269832092|gb|EEZ86216.1| crossover junction endodeoxyribonuclease RuvC [Vibrio harveyi 1DA3]
          Length = 173

 Score =  127 bits (319), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 68/152 (44%), Positives = 98/152 (64%), Gaps = 7/152 (4%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQS---LAFRLCQLYEGLTDVIKNW 63
           I+GIDPG R TG+G++   G +L ++ SG    C+R S   L  RL Q+Y G+T++I  +
Sbjct: 4   ILGIDPGSRITGYGVIRQQGRHLQYLGSG----CIRTSEKELPGRLKQIYAGVTEIITQF 59

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +P+  A+EQVF+ K+A + LKLGQAR  AI++   A +PV EYA   IK+AV G G  DK
Sbjct: 60  QPDVFAIEQVFMAKNADSALKLGQARGSAIVAAVNADLPVHEYAARLIKQAVTGTGGADK 119

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHA 155
            Q+  M++ ++        DAADAL +A+CHA
Sbjct: 120 VQVQHMVQHMLKLPAKPQADAADALGVAICHA 151


>gi|254506056|ref|ZP_05118200.1| crossover junction endodeoxyribonuclease RuvC [Vibrio
           parahaemolyticus 16]
 gi|219550874|gb|EED27855.1| crossover junction endodeoxyribonuclease RuvC [Vibrio
           parahaemolyticus 16]
          Length = 173

 Score =  127 bits (319), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 66/152 (43%), Positives = 99/152 (65%), Gaps = 7/152 (4%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQS---LAFRLCQLYEGLTDVIKNW 63
           I+GIDPG R TG+G++   G +L ++ SG    C+R S   L  RL Q+Y G++++I  +
Sbjct: 4   ILGIDPGSRITGYGVIRQNGRHLHYLGSG----CIRTSEKDLPGRLKQIYAGVSEIITQF 59

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +P+  A+EQVF+ ++A + LKLGQAR  AI++   A +PV EYA   IK+AV G G  DK
Sbjct: 60  QPDVFAIEQVFMARNADSALKLGQARGSAIVAAVNAELPVHEYAARLIKQAVTGTGGADK 119

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHA 155
           +Q+  M++ ++        DAADAL +A+CHA
Sbjct: 120 EQVQHMVQQMLKLPGKPQADAADALGVAICHA 151


>gi|313894587|ref|ZP_07828150.1| crossover junction endodeoxyribonuclease RuvC [Veillonella sp. oral
           taxon 158 str. F0412]
 gi|313440777|gb|EFR59206.1| crossover junction endodeoxyribonuclease RuvC [Veillonella sp. oral
           taxon 158 str. F0412]
          Length = 164

 Score =  127 bits (319), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 64/161 (39%), Positives = 100/161 (62%), Gaps = 1/161 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RIIGIDPG    G+GI+DV G  L  V+ G I +    + + RL  L+ GL+D+++ ++
Sbjct: 1   MRIIGIDPGTAICGYGIIDVKGSKLTPVAYGAITTPKELTDSQRLEILFNGLSDILEEYK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P++  VE++F N++    +K+GQAR + +L+    RIP+ EY P  IK+AV G G  DK 
Sbjct: 61  PDKFGVEELFFNRNVTTAIKVGQARGVILLAAEQQRIPIYEYTPLQIKQAVTGYGKADKN 120

Query: 125 Q-IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYK 164
           Q I+M + +L      K  D ADALA+A+C A+ +++   K
Sbjct: 121 QVIYMTMNILGIREKIKPDDIADALAVAICTAHSSHNDRLK 161


>gi|113970238|ref|YP_734031.1| Holliday junction resolvase [Shewanella sp. MR-4]
 gi|114047573|ref|YP_738123.1| Holliday junction resolvase [Shewanella sp. MR-7]
 gi|123030604|sp|Q0HUY9|RUVC_SHESR RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|123325053|sp|Q0HIZ3|RUVC_SHESM RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|113884922|gb|ABI38974.1| crossover junction endodeoxyribonuclease RuvC [Shewanella sp. MR-4]
 gi|113889015|gb|ABI43066.1| crossover junction endodeoxyribonuclease RuvC [Shewanella sp. MR-7]
          Length = 173

 Score =  127 bits (319), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 66/156 (42%), Positives = 103/156 (66%), Gaps = 8/156 (5%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQS---LAFRLCQLYEGLTDVIKNW 63
           I+G+DPG R TG+G++   G    ++ SG    C+R S   L  RL Q+++G++++I+ +
Sbjct: 4   ILGVDPGSRITGYGVIQCQGRQQLYLGSG----CIRTSGEDLPLRLKQIFDGISEIIRQY 59

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +P+E A+E+VF+ K+A + LKLGQAR  AI++  +A +PV+EY+   IK AV+G G   K
Sbjct: 60  QPDEFAIERVFLAKNADSALKLGQARGAAIVAATVANLPVAEYSATQIKNAVVGTGRAKK 119

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHAN 159
           +Q+  M++ L+        DAADAL +AVCH YH N
Sbjct: 120 EQVQHMIQQLLKLPAAPQADAADALGVAVCH-YHTN 154


>gi|209517512|ref|ZP_03266352.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia sp.
           H160]
 gi|295677646|ref|YP_003606170.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia sp.
           CCGE1002]
 gi|209502045|gb|EEA02061.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia sp.
           H160]
 gi|295437489|gb|ADG16659.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia sp.
           CCGE1002]
          Length = 180

 Score =  127 bits (319), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 63/156 (40%), Positives = 100/156 (64%), Gaps = 1/156 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGLR TG+G+++  G  L +V+SG ++      L  RL  ++ G++ +I+   
Sbjct: 1   MRILGIDPGLRVTGFGVIEQHGHTLRYVASG-VIRTADADLPSRLGTIFAGISTLIREHA 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P++AA+E+VFVN +  +TL LGQAR  AI       +PV+EY    +K++V+G G   K+
Sbjct: 60  PDQAAIEKVFVNVNPQSTLLLGQARGAAICGLVAGGVPVAEYTALQLKQSVVGYGRATKE 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           Q+  M+  L+  S   G DAADAL +A+CHA+  ++
Sbjct: 120 QMQQMVVRLLSLSGVPGTDAADALGMAICHAHGGST 155


>gi|329120727|ref|ZP_08249389.1| crossover junction endoribonuclease subunit C [Neisseria
           bacilliformis ATCC BAA-1200]
 gi|327460524|gb|EGF06860.1| crossover junction endoribonuclease subunit C [Neisseria
           bacilliformis ATCC BAA-1200]
          Length = 179

 Score =  127 bits (318), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 67/158 (42%), Positives = 98/158 (62%)

Query: 3   KSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
           K +RI+GIDPG R TG+GI+D+ G    +V+SG I +     LA R+  + E L ++I  
Sbjct: 4   KPLRILGIDPGSRTTGFGIIDLIGREHHYVASGCIKTIAGDELAGRIGVIVENLAEIIDC 63

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
           +RP++AAVE+VFVN +  +TL LGQAR  A+ +  +  +PV EY    +K+AV+G G   
Sbjct: 64  YRPQQAAVEKVFVNANPASTLMLGQARGAAVAALVMRGLPVYEYTALQVKQAVVGQGKAA 123

Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           K+Q+  M+  ++  S     DAAD LA A+ HA   NS
Sbjct: 124 KEQVQHMVVRMLRLSGTPQPDAADGLATALTHALRNNS 161


>gi|163802052|ref|ZP_02195948.1| Holliday junction resolvase [Vibrio sp. AND4]
 gi|159174193|gb|EDP59001.1| Holliday junction resolvase [Vibrio sp. AND4]
          Length = 173

 Score =  127 bits (318), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 68/152 (44%), Positives = 98/152 (64%), Gaps = 7/152 (4%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQS---LAFRLCQLYEGLTDVIKNW 63
           I+GIDPG R TG+G++   G +L ++ SG    C+R S   L  RL Q+Y G+T++I  +
Sbjct: 4   ILGIDPGSRITGYGVIRQQGRHLQYLGSG----CIRTSEKELPGRLKQIYAGVTEIITQF 59

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +P+  A+EQVF+ K+A + LKLGQAR  AI++   A +PV EYA   IK+AV G G  DK
Sbjct: 60  QPDVFAIEQVFMAKNADSALKLGQARGSAIVAAVNADLPVYEYAARLIKQAVTGTGGADK 119

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHA 155
            Q+  M++ ++        DAADAL +A+CHA
Sbjct: 120 VQVQHMVQHMLKLPAKPQADAADALGVAICHA 151


>gi|304312894|ref|YP_003812492.1| Holliday junction resolvasome endonuclease subunit [gamma
           proteobacterium HdN1]
 gi|301798627|emb|CBL46859.1| Holliday junction resolvasome endonuclease subunit [gamma
           proteobacterium HdN1]
          Length = 179

 Score =  127 bits (318), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 60/149 (40%), Positives = 96/149 (64%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+G+DPG R TG+G++   G+ + FV  G I +  ++++  RL Q+Y+G+  VI+ +RPE
Sbjct: 4   ILGVDPGSRVTGYGVIKKEGNQIRFVDCGCIYTNEKEAIPVRLQQIYQGIVAVIREYRPE 63

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           +A++EQVF+  +A + LKLGQAR  A+++     + V EY+    K AV+G G  +K Q+
Sbjct: 64  QASIEQVFMANNADSALKLGQARGSAVVACMNESVEVHEYSARQAKLAVVGTGAAEKAQV 123

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHA 155
             M+K ++        DAADAL +A+CHA
Sbjct: 124 QHMIKRILNLPEEPSTDAADALGLAICHA 152


>gi|325201882|gb|ADY97336.1| crossover junction endodeoxyribonuclease RuvC [Neisseria
           meningitidis M01-240149]
 gi|325208365|gb|ADZ03817.1| crossover junction endodeoxyribonuclease RuvC [Neisseria
           meningitidis NZ-05/33]
          Length = 178

 Score =  127 bits (318), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 66/155 (42%), Positives = 100/155 (64%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M  ++RI+GIDPG R TG+GI+DV G +  +V+SG I +    SLA R+  +   + +V+
Sbjct: 1   MSATVRILGIDPGSRVTGFGIIDVRGRDHFYVASGCIKTPADASLADRIAVIVRHIGEVV 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             ++P++AAVEQVFVN +  +TL LGQAR  A+ +    ++PVSEY    +K+AV+G G 
Sbjct: 61  AVYKPQQAAVEQVFVNVNPASTLMLGQARGAALAALVSHKLPVSEYTALQVKQAVVGKGK 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHA 155
             K+Q+  M+  ++  S     DAAD LA+A+ HA
Sbjct: 121 AAKEQVQHMVVQMLGLSGTPQADAADGLAVALTHA 155


>gi|117920400|ref|YP_869592.1| Holliday junction resolvase [Shewanella sp. ANA-3]
 gi|166233301|sp|A0KWL7|RUVC_SHESA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|117612732|gb|ABK48186.1| crossover junction endodeoxyribonuclease RuvC [Shewanella sp.
           ANA-3]
          Length = 173

 Score =  127 bits (318), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 66/156 (42%), Positives = 103/156 (66%), Gaps = 8/156 (5%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQS---LAFRLCQLYEGLTDVIKNW 63
           I+G+DPG R TG+G++   G    ++ SG    C+R S   L  RL Q+++G++++I+ +
Sbjct: 4   ILGVDPGSRITGYGVIQCLGRQQLYLGSG----CIRTSGEDLPLRLKQIFDGISEIIRQY 59

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +P+E A+E+VF+ K+A + LKLGQAR  AI++  +A +PV+EY+   IK AV+G G   K
Sbjct: 60  QPDEFAIERVFLAKNADSALKLGQARGAAIVAATVANLPVAEYSATQIKNAVVGTGRAKK 119

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHAN 159
           +Q+  M++ L+        DAADAL +AVCH YH N
Sbjct: 120 EQVQHMIQQLLKLPAAPQADAADALGVAVCH-YHTN 154


>gi|226311451|ref|YP_002771345.1| crossover junction endodeoxyribonuclease [Brevibacillus brevis NBRC
           100599]
 gi|254767462|sp|C0ZAN2|RUVC_BREBN RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|226094399|dbj|BAH42841.1| crossover junction endodeoxyribonuclease [Brevibacillus brevis NBRC
           100599]
          Length = 166

 Score =  126 bits (317), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 63/152 (41%), Positives = 94/152 (61%), Gaps = 1/152 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPG+   G+G+VD  G  L  V  G+I +     +  RL Q++E +  +++ +R
Sbjct: 1   MRILGIDPGIAIVGFGVVDKEGSQLRPVQYGSIQTEAGLPVPLRLKQIFEAMQSLLETYR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+E +VE++F NK+      +GQAR + IL+  LA +PV EY P  +K+AV G G  +KK
Sbjct: 61  PDEMSVEKLFFNKNVTTAFTVGQARGVIILAAELAGVPVYEYTPMQVKQAVTGYGGAEKK 120

Query: 125 QIHMMLKMLMP-ESFFKGKDAADALAIAVCHA 155
           QI  M K+L+  +   K  D ADAL IA+ HA
Sbjct: 121 QIQEMTKLLLRLKEVPKPDDVADALGIAITHA 152


>gi|120598879|ref|YP_963453.1| Holliday junction resolvase [Shewanella sp. W3-18-1]
 gi|146293035|ref|YP_001183459.1| Holliday junction resolvase [Shewanella putrefaciens CN-32]
 gi|166233300|sp|A4Y6S7|RUVC_SHEPC RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|166233302|sp|A1RJQ4|RUVC_SHESW RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|120558972|gb|ABM24899.1| crossover junction endodeoxyribonuclease RuvC [Shewanella sp.
           W3-18-1]
 gi|145564725|gb|ABP75660.1| crossover junction endodeoxyribonuclease RuvC [Shewanella
           putrefaciens CN-32]
 gi|319426435|gb|ADV54509.1| crossover junction endodeoxyribonuclease RuvC [Shewanella
           putrefaciens 200]
          Length = 173

 Score =  126 bits (317), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 67/156 (42%), Positives = 104/156 (66%), Gaps = 8/156 (5%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQS---LAFRLCQLYEGLTDVIKNW 63
           I+G+DPG R TG+G++   G +  ++ SG    C+R S   L+ RL Q+++G+T++I+ +
Sbjct: 4   ILGVDPGSRITGYGVIQCQGRHQIYLGSG----CIRTSSEELSGRLKQIFDGITEIIRQY 59

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +P+E A+E+VF+ K+A + LKLGQAR  AI++  +A +PV+EY+   IK AV+G G   K
Sbjct: 60  QPDEFAIERVFMAKNADSALKLGQARGAAIVAATVANLPVAEYSATQIKSAVVGTGRAKK 119

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHAN 159
           +QI  M++ L+        DAADAL +AVCH YH  
Sbjct: 120 EQIQHMIQQLLKLPAAPQADAADALGVAVCH-YHTR 154


>gi|90408543|ref|ZP_01216700.1| crossover junction endodeoxyribonuclease RuvC [Psychromonas sp.
           CNPT3]
 gi|90310362|gb|EAS38490.1| crossover junction endodeoxyribonuclease RuvC [Psychromonas sp.
           CNPT3]
          Length = 173

 Score =  126 bits (317), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 65/157 (41%), Positives = 100/157 (63%), Gaps = 7/157 (4%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVR---QSLAFRLCQLYEGLTDVIKNW 63
           I+GIDPG R TG+GI++  G    +++SG    C+R    +LA +L  ++ G++++IK +
Sbjct: 4   ILGIDPGSRITGYGIIEQKGAKCIYIASG----CIRTKGDTLAPKLDMIFSGISEIIKQY 59

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +P E A+EQVF+ K+  + LKLGQAR  AI++   A + + EY+   IK+AV+G G   K
Sbjct: 60  QPTEFAIEQVFMGKNPDSALKLGQARGAAIVAATQADLYICEYSARQIKQAVVGTGAATK 119

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
            Q+  M+  L+  S     DAAD LA+A+CHA+ A S
Sbjct: 120 DQVQQMVVRLLQLSGTPQADAADGLAVAICHAHTAQS 156


>gi|303230210|ref|ZP_07316978.1| crossover junction endodeoxyribonuclease RuvC [Veillonella atypica
           ACS-134-V-Col7a]
 gi|302515136|gb|EFL57110.1| crossover junction endodeoxyribonuclease RuvC [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 165

 Score =  126 bits (316), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 64/157 (40%), Positives = 97/157 (61%), Gaps = 1/157 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RIIGIDPG    G+GI+DV G  L  V+ G I +    + A RL  L+  L+D+++ ++
Sbjct: 1   MRIIGIDPGTAICGYGIIDVQGSKLTPVAYGAITTPKELTDAQRLEILFNDLSDILEEYK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P++  VE++F N++    +K+GQAR I +L+    RIP+ EY P  IK+AV G G  DK 
Sbjct: 61  PDKFGVEELFFNRNVTTAIKVGQARGIILLAAEQQRIPIYEYTPLQIKQAVTGYGKADKN 120

Query: 125 Q-IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           Q I+M + +L      K  D ADALA+A+C A+ ++ 
Sbjct: 121 QVIYMTMNILGIREKIKPDDTADALAVAICTAHSSHQ 157


>gi|134299517|ref|YP_001113013.1| crossover junction endodeoxyribonuclease RuvC [Desulfotomaculum
           reducens MI-1]
 gi|172044283|sp|A4J535|RUVC_DESRM RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|134052217|gb|ABO50188.1| Holliday junction endonuclease RuvC [Desulfotomaculum reducens
           MI-1]
          Length = 163

 Score =  126 bits (316), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 69/160 (43%), Positives = 103/160 (64%), Gaps = 11/160 (6%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQS----LAFRLCQLYEGLTDVIKN 62
           I+GIDPG   TG+G+++  G+    ++     SC+R      L  RL +LY+GL D+IK 
Sbjct: 3   ILGIDPGTAITGYGVIEFIGNRYKPIT----YSCLRTEPDLPLDLRLKKLYQGLMDIIKR 58

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
           ++P+  AVE++F NK+A   L +G AR IA+L+ A + IPV+EY P  +K+AV G G  +
Sbjct: 59  YQPDCMAVEELFFNKNARTALAVGHARGIALLAGANSSIPVAEYTPLQVKQAVTGYGKAE 118

Query: 123 KKQIHMMLKML--MPESFFKGKDAADALAIAVCHAYHANS 160
           K+QI  M+K L  +PE   K  D ADALA+A+CHA  +++
Sbjct: 119 KQQIQFMVKTLLSLPE-IPKPDDVADALAVAICHAQWSST 157


>gi|323495174|ref|ZP_08100259.1| Holliday junction resolvase [Vibrio brasiliensis LMG 20546]
 gi|323310614|gb|EGA63793.1| Holliday junction resolvase [Vibrio brasiliensis LMG 20546]
          Length = 173

 Score =  126 bits (316), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 66/152 (43%), Positives = 99/152 (65%), Gaps = 7/152 (4%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQS---LAFRLCQLYEGLTDVIKNW 63
           I+GIDPG R TG+G++   G +L ++ SG    C+R S   L  RL Q+Y G++++I  +
Sbjct: 4   ILGIDPGSRITGYGVIRQNGRHLQYLGSG----CIRTSEKELPGRLKQIYAGVSEIITQF 59

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +P+  A+EQVF+ ++A + LKLGQAR  AI++   A +PV EYA   IK+AV G G  DK
Sbjct: 60  QPDVFAIEQVFMARNADSALKLGQARGSAIVAAVNADLPVYEYAARLIKQAVTGTGGADK 119

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHA 155
           +Q+  M++ ++        DAADAL +A+CHA
Sbjct: 120 EQVQHMVQQMLKLPGKPQADAADALGVAICHA 151


>gi|91793240|ref|YP_562891.1| crossover junction endodeoxyribonuclease RuvC [Shewanella
           denitrificans OS217]
 gi|123060935|sp|Q12N08|RUVC_SHEDO RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|91715242|gb|ABE55168.1| crossover junction endodeoxyribonuclease RuvC [Shewanella
           denitrificans OS217]
          Length = 173

 Score =  126 bits (316), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 67/156 (42%), Positives = 100/156 (64%), Gaps = 8/156 (5%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQS---LAFRLCQLYEGLTDVIKNW 63
           I+G+DPG R TG+G++   G    ++ SG    C+R S   L  RL Q++EGLT++I+ +
Sbjct: 4   ILGVDPGSRITGYGVIQCQGRQQIYLGSG----CIRTSSDELPIRLKQIFEGLTEIIRQY 59

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +PE+ A+E+VF+ K+A + LKLGQAR  AI++   A +PV+EY+   IK AV+G G   K
Sbjct: 60  QPEQFAIERVFMAKNADSALKLGQARGAAIVAATFADLPVAEYSATQIKSAVVGTGRAQK 119

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHAN 159
            Q+  M++ L         DAADAL +A+CH YH +
Sbjct: 120 AQVQHMIQQLFKLPAAPQADAADALGVALCH-YHTH 154


>gi|148261888|ref|YP_001236015.1| Holliday junction resolvase [Acidiphilium cryptum JF-5]
 gi|187611411|sp|A5G2L4|RUVC_ACICJ RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|146403569|gb|ABQ32096.1| crossover junction endodeoxyribonuclease RuvC [Acidiphilium cryptum
           JF-5]
          Length = 167

 Score =  126 bits (316), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 72/152 (47%), Positives = 105/152 (69%)

Query: 6   RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           RIIGIDPGLR TG+GI++  G+ L  V+ G I +    ++A RL  L   L  ++  + P
Sbjct: 6   RIIGIDPGLRFTGFGIIEADGNRLRHVADGVIATDGAAAVAERLHTLDAALARLLATYAP 65

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
           + AAVE+ +VN++A ATLKLG AR +A+L+PA A I V+EY   T+K+AV+G G  +K Q
Sbjct: 66  DHAAVEETYVNRNATATLKLGYARGVALLAPARAGIAVAEYGAKTVKRAVVGTGAAEKDQ 125

Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYH 157
           + +M++ L+P +     DAADALA+A+CHA+H
Sbjct: 126 VALMVRRLLPGAAITRADAADALAVAICHAHH 157


>gi|161572978|ref|YP_207323.2| Holliday junction resolvase [Neisseria gonorrhoeae FA 1090]
 gi|254493063|ref|ZP_05106234.1| holliday junction resolvase [Neisseria gonorrhoeae 1291]
 gi|268598318|ref|ZP_06132485.1| holliday junction resolvase [Neisseria gonorrhoeae MS11]
 gi|268600670|ref|ZP_06134837.1| holliday junction resolvase [Neisseria gonorrhoeae PID18]
 gi|268602981|ref|ZP_06137148.1| holliday junction resolvase [Neisseria gonorrhoeae PID1]
 gi|268681453|ref|ZP_06148315.1| holliday junction resolvase [Neisseria gonorrhoeae PID332]
 gi|268683622|ref|ZP_06150484.1| holliday junction resolvase [Neisseria gonorrhoeae SK-92-679]
 gi|268685925|ref|ZP_06152787.1| holliday junction resolvase [Neisseria gonorrhoeae SK-93-1035]
 gi|97274826|sp|Q5FA76|RUVC_NEIG1 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|226512103|gb|EEH61448.1| holliday junction resolvase [Neisseria gonorrhoeae 1291]
 gi|268582449|gb|EEZ47125.1| holliday junction resolvase [Neisseria gonorrhoeae MS11]
 gi|268584801|gb|EEZ49477.1| holliday junction resolvase [Neisseria gonorrhoeae PID18]
 gi|268587112|gb|EEZ51788.1| holliday junction resolvase [Neisseria gonorrhoeae PID1]
 gi|268621737|gb|EEZ54137.1| holliday junction resolvase [Neisseria gonorrhoeae PID332]
 gi|268623906|gb|EEZ56306.1| holliday junction resolvase [Neisseria gonorrhoeae SK-92-679]
 gi|268626209|gb|EEZ58609.1| holliday junction resolvase [Neisseria gonorrhoeae SK-93-1035]
          Length = 178

 Score =  126 bits (316), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 65/155 (41%), Positives = 100/155 (64%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M  ++RI+GIDPG R TG+GI+DV G +  +V+SG I +   + LA R+  +   + +V+
Sbjct: 1   MSATVRILGIDPGSRVTGFGIIDVRGRDHFYVASGCIKTPADEPLADRIAVIVRHIGEVV 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             ++P++AAVEQVFVN +  +TL LGQAR  A+ +    ++PVSEY    +K+AV+G G 
Sbjct: 61  AVYKPQQAAVEQVFVNVNPASTLMLGQARGAALAALVSHKLPVSEYTALQVKQAVVGKGK 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHA 155
             K+Q+  M+  ++  S     DAAD LA+A+ HA
Sbjct: 121 AAKEQVQHMVVQMLGLSGTPQADAADGLAVALTHA 155


>gi|153864403|ref|ZP_01997317.1| crossover junction endodeoxyribonuclease RuvC [Beggiatoa sp. SS]
 gi|152146103|gb|EDN72684.1| crossover junction endodeoxyribonuclease RuvC [Beggiatoa sp. SS]
          Length = 158

 Score =  126 bits (316), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 71/156 (45%), Positives = 103/156 (66%), Gaps = 7/156 (4%)

Query: 6   RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQS---LAFRLCQLYEGLTDVIKN 62
           RI+GIDPG R TG+GI+D       +V+SG    C+R     +  RL ++Y GL ++I+ 
Sbjct: 4   RILGIDPGSRITGFGIIDGLRQKSVYVTSG----CIRTQSKLMPQRLQEIYTGLNEIIEQ 59

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
           ++P  +A+EQVFV+++  + LKLGQAR +AIL+     + V EYAP  IK+AV+G GH D
Sbjct: 60  YQPTISAIEQVFVHRNVASALKLGQARGVAILACVQHNLTVHEYAPTQIKQAVVGNGHAD 119

Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHA 158
           K Q+  M+K+L+  S     DAAD LA A+CHA+H+
Sbjct: 120 KIQVQQMVKILLSLSNTPQVDAADGLAAALCHAHHS 155


>gi|269797653|ref|YP_003311553.1| crossover junction endodeoxyribonuclease RuvC [Veillonella parvula
           DSM 2008]
 gi|282850098|ref|ZP_06259480.1| crossover junction endodeoxyribonuclease RuvC [Veillonella parvula
           ATCC 17745]
 gi|294793312|ref|ZP_06758457.1| crossover junction endodeoxyribonuclease RuvC [Veillonella sp.
           6_1_27]
 gi|294795134|ref|ZP_06760268.1| crossover junction endodeoxyribonuclease RuvC [Veillonella sp.
           3_1_44]
 gi|269094282|gb|ACZ24273.1| crossover junction endodeoxyribonuclease RuvC [Veillonella parvula
           DSM 2008]
 gi|282580287|gb|EFB85688.1| crossover junction endodeoxyribonuclease RuvC [Veillonella parvula
           ATCC 17745]
 gi|294453926|gb|EFG22301.1| crossover junction endodeoxyribonuclease RuvC [Veillonella sp.
           3_1_44]
 gi|294455743|gb|EFG24108.1| crossover junction endodeoxyribonuclease RuvC [Veillonella sp.
           6_1_27]
          Length = 164

 Score =  126 bits (316), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 64/161 (39%), Positives = 99/161 (61%), Gaps = 1/161 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RIIGIDPG    G+GI+DV G  L  V+ G I +    + + RL  L+  L+D+++ +R
Sbjct: 1   MRIIGIDPGTAICGYGIIDVKGSKLTPVAYGAITTPKELTDSQRLEILFNDLSDLLEEYR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P++  VE++F N++    +K+GQAR + +L+    RIP+ EY P  IK+AV G G  DK 
Sbjct: 61  PDKFGVEELFFNRNVTTAIKVGQARGVILLAAEQQRIPIYEYTPLQIKQAVTGYGKADKN 120

Query: 125 Q-IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYK 164
           Q I+M + +L      K  D ADALA+A+C A+ +++   K
Sbjct: 121 QVIYMTMNILGIREKIKPDDTADALAVAICTAHSSHNDRLK 161


>gi|194097787|ref|YP_002000830.1| Holliday junction resolvase [Neisseria gonorrhoeae NCCP11945]
 gi|239998285|ref|ZP_04718209.1| Holliday junction resolvase [Neisseria gonorrhoeae 35/02]
 gi|240013467|ref|ZP_04720380.1| Holliday junction resolvase [Neisseria gonorrhoeae DGI18]
 gi|240015906|ref|ZP_04722446.1| Holliday junction resolvase [Neisseria gonorrhoeae FA6140]
 gi|240080045|ref|ZP_04724588.1| Holliday junction resolvase [Neisseria gonorrhoeae FA19]
 gi|240112255|ref|ZP_04726745.1| Holliday junction resolvase [Neisseria gonorrhoeae MS11]
 gi|240115000|ref|ZP_04729062.1| Holliday junction resolvase [Neisseria gonorrhoeae PID18]
 gi|240117285|ref|ZP_04731347.1| Holliday junction resolvase [Neisseria gonorrhoeae PID1]
 gi|240120539|ref|ZP_04733501.1| Holliday junction resolvase [Neisseria gonorrhoeae PID24-1]
 gi|240122836|ref|ZP_04735792.1| Holliday junction resolvase [Neisseria gonorrhoeae PID332]
 gi|240125032|ref|ZP_04737918.1| Holliday junction resolvase [Neisseria gonorrhoeae SK-92-679]
 gi|240127546|ref|ZP_04740207.1| Holliday junction resolvase [Neisseria gonorrhoeae SK-93-1035]
 gi|260441184|ref|ZP_05795000.1| Holliday junction resolvase [Neisseria gonorrhoeae DGI2]
 gi|268594141|ref|ZP_06128308.1| holliday junction resolvase [Neisseria gonorrhoeae 35/02]
 gi|268596192|ref|ZP_06130359.1| holliday junction resolvase [Neisseria gonorrhoeae FA19]
 gi|291044518|ref|ZP_06570227.1| holliday junction resolvase [Neisseria gonorrhoeae DGI2]
 gi|293397653|ref|ZP_06641859.1| crossover junction endodeoxyribonuclease RuvC [Neisseria
           gonorrhoeae F62]
 gi|59717506|gb|AAW88911.1| putative crossover junction endodeoxyribonuclease [Neisseria
           gonorrhoeae FA 1090]
 gi|193933077|gb|ACF28901.1| Holliday junction resolvase [Neisseria gonorrhoeae NCCP11945]
 gi|268547530|gb|EEZ42948.1| holliday junction resolvase [Neisseria gonorrhoeae 35/02]
 gi|268549980|gb|EEZ44999.1| holliday junction resolvase [Neisseria gonorrhoeae FA19]
 gi|291011412|gb|EFE03408.1| holliday junction resolvase [Neisseria gonorrhoeae DGI2]
 gi|291611599|gb|EFF40668.1| crossover junction endodeoxyribonuclease RuvC [Neisseria
           gonorrhoeae F62]
 gi|317163565|gb|ADV07106.1| Holliday junction resolvase [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 180

 Score =  125 bits (315), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 65/155 (41%), Positives = 100/155 (64%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M  ++RI+GIDPG R TG+GI+DV G +  +V+SG I +   + LA R+  +   + +V+
Sbjct: 3   MSATVRILGIDPGSRVTGFGIIDVRGRDHFYVASGCIKTPADEPLADRIAVIVRHIGEVV 62

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             ++P++AAVEQVFVN +  +TL LGQAR  A+ +    ++PVSEY    +K+AV+G G 
Sbjct: 63  AVYKPQQAAVEQVFVNVNPASTLMLGQARGAALAALVSHKLPVSEYTALQVKQAVVGKGK 122

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHA 155
             K+Q+  M+  ++  S     DAAD LA+A+ HA
Sbjct: 123 AAKEQVQHMVVQMLGLSGTPQADAADGLAVALTHA 157


>gi|304387249|ref|ZP_07369445.1| crossover junction endoribonuclease subunit C [Neisseria
           meningitidis ATCC 13091]
 gi|304338716|gb|EFM04830.1| crossover junction endoribonuclease subunit C [Neisseria
           meningitidis ATCC 13091]
          Length = 180

 Score =  125 bits (315), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 65/155 (41%), Positives = 99/155 (63%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M  ++RI+GIDPG R TG+G++DV G N  +V+SG I +     LA R+  +   + +V+
Sbjct: 3   MAATVRILGIDPGSRVTGFGVIDVRGRNHFYVASGCIKTPADAPLADRIAVIVRHIGEVV 62

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             ++P++AAVEQVFVN +  +TL LGQAR  A+ +    ++PVSEY    +K+AV+G G 
Sbjct: 63  AVYKPQQAAVEQVFVNVNPASTLMLGQARGAALAALVSHKLPVSEYTALQVKQAVVGKGK 122

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHA 155
             K+Q+  M+  ++  S     DAAD LA+A+ HA
Sbjct: 123 AAKEQVQHMVVQMLGLSGTPQADAADGLAVALTHA 157


>gi|117621378|ref|YP_855842.1| Holliday junction resolvase [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
 gi|166231575|sp|A0KHU1|RUVC_AERHH RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|117562785|gb|ABK39733.1| crossover junction endodeoxyribonuclease RuvC [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 173

 Score =  125 bits (315), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 66/166 (39%), Positives = 104/166 (62%), Gaps = 8/166 (4%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLA---FRLCQLYEGLTDVIKNW 63
           I+GIDPG R TG+G++ +      ++ SG    C+R  L     RL Q+Y+G++++I  +
Sbjct: 4   ILGIDPGSRITGYGVIRIVAGKAEYLGSG----CIRTDLGELPSRLKQVYDGVSEIITQF 59

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +P+E A+E+VF+ ++A + LKLGQAR  AI++   A +PVSEY+   IK+AV+G G   K
Sbjct: 60  KPDEFAIERVFMARNADSALKLGQARGSAIVAAVNALLPVSEYSATQIKQAVVGTGGAAK 119

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQD 169
           +Q+  M+  L+  S     DAADAL +A+CH +H      K+A + 
Sbjct: 120 EQVQHMVTHLLKLSATPQADAADALGVALCH-FHTRQILIKMAGRS 164


>gi|24373978|ref|NP_718021.1| crossover junction endodeoxyribonuclease RuvC [Shewanella
           oneidensis MR-1]
 gi|38372486|sp|Q8EEF1|RUVC_SHEON RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|24348429|gb|AAN55465.1|AE015684_2 crossover junction endodeoxyribonuclease RuvC [Shewanella
           oneidensis MR-1]
          Length = 173

 Score =  125 bits (315), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 65/156 (41%), Positives = 103/156 (66%), Gaps = 8/156 (5%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQS---LAFRLCQLYEGLTDVIKNW 63
           I+G+DPG R TG+G++   G    ++ SG    C+R S   L  +L Q+++G++++I+ +
Sbjct: 4   ILGVDPGSRITGYGVIQCQGRQQLYLGSG----CIRTSGDDLPLKLKQIFDGISEIIRQY 59

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +P+E A+E+VF+ K+A + LKLGQAR  AI++  +A +PV+EY+   IK AV+G G   K
Sbjct: 60  QPDEFAIERVFLAKNADSALKLGQARGAAIVAATVANLPVAEYSATQIKSAVVGTGRAKK 119

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHAN 159
           +Q+  M++ L+        DAADAL +AVCH YH N
Sbjct: 120 EQVQHMIQQLLKLPAAPQADAADALGVAVCH-YHTN 154


>gi|303231812|ref|ZP_07318528.1| crossover junction endodeoxyribonuclease RuvC [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302513519|gb|EFL55545.1| crossover junction endodeoxyribonuclease RuvC [Veillonella atypica
           ACS-049-V-Sch6]
          Length = 165

 Score =  125 bits (315), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 63/157 (40%), Positives = 97/157 (61%), Gaps = 1/157 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RIIGIDPG    G+GI+DV G  L  V+ G I +    + A RL  L+  L+D+++ ++
Sbjct: 1   MRIIGIDPGTAICGYGIIDVQGSKLTPVAYGAITTPKELTDAQRLEILFNDLSDILEEYK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P++  VE++F N++    +K+GQAR + +L+    RIP+ EY P  IK+AV G G  DK 
Sbjct: 61  PDKFGVEELFFNRNVTTAIKVGQARGVILLAAEQQRIPIYEYTPLQIKQAVTGYGKADKN 120

Query: 125 Q-IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           Q I+M + +L      K  D ADALA+A+C A+ ++ 
Sbjct: 121 QVIYMTMNILGIREKIKPDDTADALAVAICTAHSSHQ 157


>gi|296314361|ref|ZP_06864302.1| crossover junction endodeoxyribonuclease RuvC [Neisseria
           polysaccharea ATCC 43768]
 gi|296838917|gb|EFH22855.1| crossover junction endodeoxyribonuclease RuvC [Neisseria
           polysaccharea ATCC 43768]
          Length = 178

 Score =  125 bits (315), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 66/155 (42%), Positives = 99/155 (63%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M  S+RI+GIDPG R TG+GI+DV G +  +V+SG I +     LA R+  +   + +V+
Sbjct: 1   MAASVRILGIDPGSRVTGFGIIDVRGRDHFYVASGCIKTPTDAPLADRIAVIVRHIGEVV 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             ++P++AAVEQVFVN +  +TL LGQAR  A+ +    ++PVSEY    +K+AV+G G 
Sbjct: 61  AVYKPQQAAVEQVFVNVNPASTLMLGQARGAALAALVSHKLPVSEYTALQVKQAVVGKGK 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHA 155
             K+Q+  M+  ++  S     DAAD LA+A+ HA
Sbjct: 121 AAKEQVQHMVVQMLGLSGTPQADAADGLAVALTHA 155


>gi|294668120|ref|ZP_06733227.1| crossover junction endodeoxyribonuclease RuvC [Neisseria elongata
           subsp. glycolytica ATCC 29315]
 gi|291309828|gb|EFE51071.1| crossover junction endodeoxyribonuclease RuvC [Neisseria elongata
           subsp. glycolytica ATCC 29315]
          Length = 178

 Score =  125 bits (314), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 69/161 (42%), Positives = 100/161 (62%), Gaps = 1/161 (0%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M K +RI+GIDPG R TG+GI+DV G    +V+SG I +     LA R+  + E + ++I
Sbjct: 1   MNKPLRILGIDPGSRITGFGIIDVVGREHFYVASGCIKTIPGDELAGRIGIIVENIGEII 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             ++P++AAVEQVFVN +  ATL LGQAR  A+ +  +  +PV EY    +K+AV+G G 
Sbjct: 61  ACYKPQQAAVEQVFVNVNPAATLMLGQARGAAVAALVMRGLPVYEYTALQVKQAVVGQGK 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSG 161
             K+Q+  M+  ++  S     DAAD LA+A+ HA   N G
Sbjct: 121 AAKEQVQDMVVRMLGLSGTPQADAADGLAVALTHALR-NQG 160


>gi|325128477|gb|EGC51357.1| crossover junction endodeoxyribonuclease RuvC [Neisseria
           meningitidis N1568]
          Length = 178

 Score =  125 bits (314), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 66/155 (42%), Positives = 99/155 (63%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M  S+RI+GIDPG R TG+G++DV G +  +V+SG I +     LA R+  +   + +VI
Sbjct: 1   MAASVRILGIDPGSRVTGFGVIDVRGRDHFYVASGCIKTPADAPLADRIAVIVRHIGEVI 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             ++P++AAVEQVFVN +  +TL LGQAR  A+ +    ++PVSEY    +K+AV+G G 
Sbjct: 61  TVYKPQQAAVEQVFVNVNPASTLMLGQARGAALAALVSHKLPVSEYTALQVKQAVVGKGK 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHA 155
             K+Q+  M+  ++  S     DAAD LA+A+ HA
Sbjct: 121 AAKEQVQHMVVQMLGLSGTPQPDAADGLAVALTHA 155


>gi|312143985|ref|YP_003995431.1| crossover junction endodeoxyribonuclease RuvC [Halanaerobium sp.
           'sapolanicus']
 gi|311904636|gb|ADQ15077.1| crossover junction endodeoxyribonuclease RuvC [Halanaerobium sp.
           'sapolanicus']
          Length = 165

 Score =  125 bits (314), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 65/161 (40%), Positives = 102/161 (63%), Gaps = 3/161 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGL   G+ +VD   +N   +  G I +   ++   RL  ++  + ++IK ++
Sbjct: 1   MRILGIDPGLATIGYALVDKENNNFKVLEYGVIKTSADKTNIKRLEIIHRNIQELIKEFK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           PE+ AVE++F NK+    +K+GQAR + +L+ A A I V+EY P  IK+AV+G G  DK+
Sbjct: 61  PEQMAVEELFFNKNVKTAIKVGQARGVILLAGAQAGIKVAEYTPLQIKQAVVGYGRADKR 120

Query: 125 QIHMMLKMLMP-ESFFKGKDAADALAIAVCHA--YHANSGY 162
           Q+  M+K L+      K  DAADALAI++CH   Y A++G+
Sbjct: 121 QVQEMVKSLLNLVELPKPDDAADALAISICHGHVYSAHAGW 161


>gi|238022887|ref|ZP_04603313.1| hypothetical protein GCWU000324_02808 [Kingella oralis ATCC 51147]
 gi|237865695|gb|EEP66833.1| hypothetical protein GCWU000324_02808 [Kingella oralis ATCC 51147]
          Length = 178

 Score =  125 bits (314), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 69/165 (41%), Positives = 97/165 (58%)

Query: 3   KSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
           +  RI+GIDPG R TG+GI+DV G    +V SG I +     LA R+  + E +++++  
Sbjct: 5   RPTRILGIDPGSRTTGFGIIDVVGREQIYVVSGCIKTIKNDELAGRIGIIVENISELVAT 64

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
           +RP  AAVE+VFVN +  ATL LGQAR  AI +  L  +PV EY    +K+AV+G G   
Sbjct: 65  YRPTVAAVERVFVNVNPAATLMLGQARGAAIAALVLRGLPVYEYTALQVKQAVVGQGKAA 124

Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
           K+Q+  M+  ++  S     DAAD LAIA+ HA        K+ S
Sbjct: 125 KEQVQHMVVQMLKLSGTPQADAADGLAIALTHALRNQGLAAKLGS 169


>gi|254669915|emb|CBA04466.1| crossover junction endodeoxyribonuclease [Neisseria meningitidis
           alpha153]
          Length = 178

 Score =  125 bits (314), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 66/155 (42%), Positives = 99/155 (63%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M  S+RI+GIDPG R TG+GI+DV G +  +V+SG I +     LA R+  +   + +V+
Sbjct: 1   MAASVRILGIDPGSRVTGFGIIDVRGRDHFYVASGCIKTPADAPLADRIAVIVRHIGEVV 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             ++P++AAVEQVFVN +  +TL LGQAR  A+ +    ++PVSEY    +K+AV+G G 
Sbjct: 61  AVYKPQQAAVEQVFVNVNPASTLMLGQARGAALAALVSHKLPVSEYTALQVKQAVVGKGK 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHA 155
             K+Q+  M+  ++  S     DAAD LA+A+ HA
Sbjct: 121 AAKEQVQHMVVQMLGLSGTPQADAADGLAVALTHA 155


>gi|254294769|ref|YP_003060792.1| Holliday junction resolvase [Hirschia baltica ATCC 49814]
 gi|254043300|gb|ACT60095.1| crossover junction endodeoxyribonuclease RuvC [Hirschia baltica
           ATCC 49814]
          Length = 167

 Score =  125 bits (314), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 59/136 (43%), Positives = 89/136 (65%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M K++RI+G+DPGLR TGWGI+D+ G  L +VS G I       ++ RL  +  GL +VI
Sbjct: 1   MSKAVRILGVDPGLRNTGWGIIDMVGPKLLWVSHGVIKPKTSLPMSERLAFIVNGLNEVI 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
           +  +P+EA +E+ FVN +  +TL LGQAR  A+   +LA + V+E+A   +K+ V+G G 
Sbjct: 61  ETHKPDEAGIEETFVNVNPKSTLLLGQARGAAMAGLSLAGLSVAEFAATKVKQCVVGTGA 120

Query: 121 GDKKQIHMMLKMLMPE 136
            DK Q+  M+K L+P+
Sbjct: 121 ADKDQVTFMIKRLLPK 136


>gi|237654508|ref|YP_002890822.1| Holliday junction resolvase [Thauera sp. MZ1T]
 gi|237625755|gb|ACR02445.1| crossover junction endodeoxyribonuclease RuvC [Thauera sp. MZ1T]
          Length = 183

 Score =  125 bits (314), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 66/156 (42%), Positives = 97/156 (62%), Gaps = 7/156 (4%)

Query: 4   SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQ---SLAFRLCQLYEGLTDVI 60
           + RI+G+DPGLR TG+G+VD  G  L +V+SG    C+R     L  RL  L +G+ +++
Sbjct: 10  ATRILGLDPGLRITGFGLVDQLGTQLRYVASG----CIRTRDGELPARLKTLLDGVREIV 65

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             +RP+  AVE+VFVN +  +TL LGQAR   I       +PV+EY    +K++V+G G 
Sbjct: 66  DTYRPDVVAVEKVFVNVNPQSTLLLGQARGAVICGAVACDLPVAEYTALQVKQSVVGYGK 125

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
             K+Q+  M++ L+      G DAADALA A+CHA+
Sbjct: 126 AHKEQVQHMVQRLLALDASPGPDAADALACAICHAH 161


>gi|149191829|ref|ZP_01870066.1| Holliday junction resolvase [Vibrio shilonii AK1]
 gi|148834347|gb|EDL51347.1| Holliday junction resolvase [Vibrio shilonii AK1]
          Length = 173

 Score =  125 bits (314), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 70/153 (45%), Positives = 101/153 (66%), Gaps = 9/153 (5%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQS---LAFRLCQLYEGLTDVIKNW 63
           I+GIDPG R TG+G++   G +L ++ SG    C+R S   L  RL Q+Y G++++I  +
Sbjct: 4   ILGIDPGSRITGYGVIRQQGRHLQYLGSG----CIRTSEAELPGRLKQIYAGVSEIITQF 59

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +P+  A+EQVF+ K+A + LKLGQAR  AI++     +PV EYA   IK+AV+G G  DK
Sbjct: 60  QPDVFAIEQVFMAKNADSALKLGQARGSAIVAAVNNDLPVYEYAARLIKQAVVGTGGADK 119

Query: 124 KQI-HMMLKMLMPESFFKGKDAADALAIAVCHA 155
            Q+ HM++ ML   S  +  DAADAL +A+CHA
Sbjct: 120 AQVQHMVMAMLKLPSKPQA-DAADALGVAICHA 151


>gi|320352802|ref|YP_004194141.1| crossover junction endodeoxyribonuclease RuvC [Desulfobulbus
           propionicus DSM 2032]
 gi|320121304|gb|ADW16850.1| crossover junction endodeoxyribonuclease RuvC [Desulfobulbus
           propionicus DSM 2032]
          Length = 162

 Score =  125 bits (313), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 62/154 (40%), Positives = 96/154 (62%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPG R TG+G++   G  + FV+ GTI +      + RL  ++E L +VI   +
Sbjct: 1   MRILGIDPGSRVTGYGVIAARGHEIGFVACGTIRTGEESDFSRRLLTIFEDLCEVISLHQ 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P  AAVE +FV+++  + LKLG AR  A+++    ++ V +Y    +K+AV G G  +K 
Sbjct: 61  PSVAAVEDMFVDRNPRSALKLGHARGAAVVAALHNKLTVFDYPARKVKQAVAGYGQAEKG 120

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHA 158
           Q+  M++ L+       KDAADALA+A+CHA+HA
Sbjct: 121 QVQHMVRTLLQLDATPSKDAADALAVAICHAHHA 154


>gi|325199964|gb|ADY95419.1| crossover junction endodeoxyribonuclease RuvC [Neisseria
           meningitidis H44/76]
          Length = 180

 Score =  125 bits (313), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 65/155 (41%), Positives = 99/155 (63%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M  S+RI+GIDPG R TG+G++DV G +  +V+SG I +     LA R+  +   + +V+
Sbjct: 3   MAASVRILGIDPGSRVTGFGVIDVRGRDHFYVASGCIKTPADAPLADRIAVIVRHIGEVV 62

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             ++P++AAVEQVFVN +  +TL LGQAR  A+ +    ++PVSEY    +K+AV+G G 
Sbjct: 63  TVYKPQQAAVEQVFVNVNPASTLMLGQARGAALAALVSHKLPVSEYTALQVKQAVVGKGK 122

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHA 155
             K+Q+  M+  ++  S     DAAD LA+A+ HA
Sbjct: 123 AAKEQVQHMVVQMLGLSGTPQPDAADGLAVALTHA 157


>gi|15677278|ref|NP_274431.1| Holliday junction resolvase [Neisseria meningitidis MC58]
 gi|20978753|sp|Q9JYV1|RUVC_NEIMB RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|7226658|gb|AAF41780.1| crossover junction endodeoxyribonuclease RuvC [Neisseria
           meningitidis MC58]
 gi|316985809|gb|EFV64752.1| crossover junction endodeoxyribonuclease RuvC [Neisseria
           meningitidis H44/76]
 gi|325134361|gb|EGC57006.1| crossover junction endodeoxyribonuclease RuvC [Neisseria
           meningitidis M13399]
 gi|325140376|gb|EGC62897.1| crossover junction endodeoxyribonuclease RuvC [Neisseria
           meningitidis CU385]
 gi|325144660|gb|EGC66958.1| crossover junction endodeoxyribonuclease RuvC [Neisseria
           meningitidis M01-240013]
 gi|325205826|gb|ADZ01279.1| crossover junction endodeoxyribonuclease RuvC [Neisseria
           meningitidis M04-240196]
          Length = 178

 Score =  125 bits (313), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 65/155 (41%), Positives = 99/155 (63%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M  S+RI+GIDPG R TG+G++DV G +  +V+SG I +     LA R+  +   + +V+
Sbjct: 1   MAASVRILGIDPGSRVTGFGVIDVRGRDHFYVASGCIKTPADAPLADRIAVIVRHIGEVV 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             ++P++AAVEQVFVN +  +TL LGQAR  A+ +    ++PVSEY    +K+AV+G G 
Sbjct: 61  TVYKPQQAAVEQVFVNVNPASTLMLGQARGAALAALVSHKLPVSEYTALQVKQAVVGKGK 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHA 155
             K+Q+  M+  ++  S     DAAD LA+A+ HA
Sbjct: 121 AAKEQVQHMVVQMLGLSGTPQPDAADGLAVALTHA 155


>gi|261392322|emb|CAX49849.1| crossover junction endodeoxyribonuclease RuvC (Holliday junction
           nuclease RuvC; Holliday junction resolvase RuvC)
           [Neisseria meningitidis 8013]
          Length = 178

 Score =  125 bits (313), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 65/155 (41%), Positives = 99/155 (63%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M  S+RI+GIDPG R TG+G++DV G +  +V+SG I +     LA R+  +   + +V+
Sbjct: 1   MAASVRILGIDPGSRVTGFGVIDVRGRDHFYVASGCIKTPADAPLADRIAVIVRHIGEVV 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             ++P++AAVEQVFVN +  +TL LGQAR  A+ +    ++PVSEY    +K+AV+G G 
Sbjct: 61  AVYKPQQAAVEQVFVNVNPASTLMLGQARGAALAALVSHKLPVSEYTALQVKQAVVGKGK 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHA 155
             K+Q+  M+  ++  S     DAAD LA+A+ HA
Sbjct: 121 AAKEQVQHMVVQMLGLSGTPQADAADGLAVALTHA 155


>gi|209695354|ref|YP_002263283.1| Holliday junction resolvase [Aliivibrio salmonicida LFI1238]
 gi|226698789|sp|B6EGJ2|RUVC_ALISL RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|208009306|emb|CAQ79572.1| crossover junction endodeoxyribonuclease RuvC [Aliivibrio
           salmonicida LFI1238]
          Length = 173

 Score =  125 bits (313), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 66/152 (43%), Positives = 97/152 (63%), Gaps = 7/152 (4%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQS---LAFRLCQLYEGLTDVIKNW 63
           I+GIDPG R TG+G++   G +L ++ SG    C+R S   L  RL Q+Y G++++I  +
Sbjct: 4   ILGIDPGSRITGYGVIRQNGRHLQYLGSG----CIRMSEKELPGRLKQIYAGVSEIITQF 59

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +P+  A+EQVF++K+A + LKLGQAR  AI++   A +PV EYA   IK+AV G G  DK
Sbjct: 60  QPDVFAIEQVFMSKNADSALKLGQARGSAIVAAVNADLPVYEYAARLIKQAVTGTGAADK 119

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHA 155
            Q+  M+  ++        DAAD L +A+CHA
Sbjct: 120 AQVQHMVMTMLKLPARPQADAADGLGVAICHA 151


>gi|187611525|sp|A9M0D4|RUVC_NEIM0 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
          Length = 178

 Score =  125 bits (313), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 65/155 (41%), Positives = 99/155 (63%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M  S+RI+GIDPG R TG+G++DV G +  +V+SG I +     LA R+  +   + +V+
Sbjct: 1   MAASVRILGIDPGSRVTGFGVIDVRGRDHFYVASGCIKTPADAPLADRIAVIVRHIGEVV 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             ++P++AAVEQVFVN +  +TL LGQAR  A+ +    ++PVSEY    +K+AV+G G 
Sbjct: 61  AVYKPQQAAVEQVFVNVNPASTLMLGQARGAALAALVSHKLPVSEYTALQVKQAVVGKGK 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHA 155
             K+Q+  M+  ++  S     DAAD LA+A+ HA
Sbjct: 121 AAKEQVQHMVVQMLGLSGTPQADAADGLAVALTHA 155


>gi|264680236|ref|YP_003280146.1| crossover junction endodeoxyribonuclease RuvC [Comamonas
           testosteroni CNB-2]
 gi|299533109|ref|ZP_07046494.1| Holliday junction resolvase [Comamonas testosteroni S44]
 gi|262210752|gb|ACY34850.1| crossover junction endodeoxyribonuclease RuvC [Comamonas
           testosteroni CNB-2]
 gi|298718886|gb|EFI59858.1| Holliday junction resolvase [Comamonas testosteroni S44]
          Length = 182

 Score =  125 bits (313), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 68/151 (45%), Positives = 97/151 (64%), Gaps = 2/151 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQ--SLAFRLCQLYEGLTDVIKN 62
           +RI+GIDPGL+ TG+G++D+ G  L +V+SGTI +   +   L  RL  L++G+++V   
Sbjct: 1   MRILGIDPGLQTTGFGVIDMEGQRLSYVASGTIRTNKMELGDLPGRLKVLFDGISEVASR 60

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
           ++PE AAVE VFVN +  +TL LGQAR  A+ +   A + VSEY    +KKAV+G G   
Sbjct: 61  YQPEVAAVEIVFVNVNPQSTLLLGQARGAALTALVNANLAVSEYTALQMKKAVVGHGRAA 120

Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAIAVC 153
           K QI  M+K L+      G DAADAL +A+ 
Sbjct: 121 KSQIQEMVKRLLQLPGLPGTDAADALGLAIT 151


>gi|297569180|ref|YP_003690524.1| crossover junction endodeoxyribonuclease RuvC [Desulfurivibrio
           alkaliphilus AHT2]
 gi|296925095|gb|ADH85905.1| crossover junction endodeoxyribonuclease RuvC [Desulfurivibrio
           alkaliphilus AHT2]
          Length = 167

 Score =  125 bits (313), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 63/152 (41%), Positives = 96/152 (63%)

Query: 6   RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           RI+G+DPG R TG+GI++  G  L F++ G +      SLA R+ ++++GL +VI   RP
Sbjct: 6   RILGVDPGSRITGYGIIEQDGPRLRFITCGVLRVARYGSLAARILRIHQGLGEVISLHRP 65

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
              AVE+VFV  +  A LKLG AR + +L+     +P++E+ P  +K+AV G G   K+Q
Sbjct: 66  HRMAVEEVFVAGNPKAALKLGHARGVILLAAMQHNLPLAEFTPLVVKQAVAGYGRASKEQ 125

Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYH 157
           +  M++ L+  S    +DAADALA+A+C A H
Sbjct: 126 VQRMVRSLLNLSASPSEDAADALAVAICGANH 157


>gi|238019730|ref|ZP_04600156.1| hypothetical protein VEIDISOL_01605 [Veillonella dispar ATCC 17748]
 gi|237863771|gb|EEP65061.1| hypothetical protein VEIDISOL_01605 [Veillonella dispar ATCC 17748]
          Length = 164

 Score =  125 bits (313), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 63/161 (39%), Positives = 99/161 (61%), Gaps = 1/161 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RIIGIDPG    G+GI+DV G  L  V+ G I +    + + RL  L+  L+D+++ ++
Sbjct: 1   MRIIGIDPGTAICGYGIIDVKGSKLTPVAYGAITTPKELTDSQRLEILFNDLSDILEEFK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P++  VE++F N++    +K+GQAR + +L+    RIP+ EY P  IK+AV G G  DK 
Sbjct: 61  PDKFGVEELFFNRNVTTAIKVGQARGVILLAAEQQRIPIYEYTPLQIKQAVTGYGKADKN 120

Query: 125 Q-IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYK 164
           Q I+M + +L      K  D ADALA+A+C A+ +++   K
Sbjct: 121 QVIYMTMNILGIREKIKPDDTADALAVAICTAHSSHNDRLK 161


>gi|313667871|ref|YP_004048155.1| crossover junction endodeoxyribonuclease [Neisseria lactamica
           ST-640]
 gi|313005333|emb|CBN86766.1| crossover junction endodeoxyribonuclease [Neisseria lactamica
           020-06]
          Length = 178

 Score =  124 bits (312), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 65/155 (41%), Positives = 99/155 (63%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M  ++RI+GIDPG R TG+GI+DV G +  +V+SG I +     LA R+  +   + +V+
Sbjct: 1   MSATVRILGIDPGSRVTGFGIIDVRGRDHFYVASGCIKTPADAPLADRIAVIVRHIGEVV 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             ++P++AAVEQVFVN +  +TL LGQAR  A+ +    ++PVSEY    +K+AV+G G 
Sbjct: 61  AVYKPQQAAVEQVFVNVNPASTLMLGQARGAALAALVSHKLPVSEYTALQVKQAVVGKGK 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHA 155
             K+Q+  M+  ++  S     DAAD LA+A+ HA
Sbjct: 121 AAKEQVQHMVVQMLGLSGTPQADAADGLAVALTHA 155


>gi|126174262|ref|YP_001050411.1| Holliday junction resolvase [Shewanella baltica OS155]
 gi|153000825|ref|YP_001366506.1| Holliday junction resolvase [Shewanella baltica OS185]
 gi|160875533|ref|YP_001554849.1| Holliday junction resolvase [Shewanella baltica OS195]
 gi|217973218|ref|YP_002357969.1| Holliday junction resolvase [Shewanella baltica OS223]
 gi|304408865|ref|ZP_07390486.1| crossover junction endodeoxyribonuclease RuvC [Shewanella baltica
           OS183]
 gi|307302868|ref|ZP_07582623.1| crossover junction endodeoxyribonuclease RuvC [Shewanella baltica
           BA175]
 gi|166233297|sp|A3D479|RUVC_SHEB5 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|166233298|sp|A6WNQ4|RUVC_SHEB8 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|189046079|sp|A9L3H9|RUVC_SHEB9 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|254767485|sp|B8EA73|RUVC_SHEB2 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|125997467|gb|ABN61542.1| crossover junction endodeoxyribonuclease RuvC [Shewanella baltica
           OS155]
 gi|151365443|gb|ABS08443.1| crossover junction endodeoxyribonuclease RuvC [Shewanella baltica
           OS185]
 gi|160861055|gb|ABX49589.1| crossover junction endodeoxyribonuclease RuvC [Shewanella baltica
           OS195]
 gi|217498353|gb|ACK46546.1| crossover junction endodeoxyribonuclease RuvC [Shewanella baltica
           OS223]
 gi|304352686|gb|EFM17083.1| crossover junction endodeoxyribonuclease RuvC [Shewanella baltica
           OS183]
 gi|306913228|gb|EFN43650.1| crossover junction endodeoxyribonuclease RuvC [Shewanella baltica
           BA175]
 gi|315267721|gb|ADT94574.1| crossover junction endodeoxyribonuclease RuvC [Shewanella baltica
           OS678]
          Length = 173

 Score =  124 bits (312), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 66/156 (42%), Positives = 103/156 (66%), Gaps = 8/156 (5%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQS---LAFRLCQLYEGLTDVIKNW 63
           I+G+DPG R TG+G++   G +  ++ SG    C+R S   L  RL Q+++G+T++I+ +
Sbjct: 4   ILGVDPGSRITGYGVIQCQGRHQIYLGSG----CIRTSSEELPGRLKQIFDGITEIIRQY 59

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +P+E A+E+VF+ K+A + LKLGQAR  AI++  +A +PV+EY+   IK AV+G G   K
Sbjct: 60  QPDEFAIERVFMAKNADSALKLGQARGAAIVAATVANLPVAEYSATQIKSAVVGTGRAQK 119

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHAN 159
            Q+  M++ L+        DAADAL +AVCH YH +
Sbjct: 120 AQVQHMIQQLLKLPAAPQADAADALGVAVCH-YHTS 154


>gi|161870284|ref|YP_001599454.1| Holliday junction resolvase [Neisseria meningitidis 053442]
 gi|161595837|gb|ABX73497.1| crossover junction endodeoxyribonuclease [Neisseria meningitidis
           053442]
          Length = 180

 Score =  124 bits (312), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 65/155 (41%), Positives = 99/155 (63%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M  S+RI+GIDPG R TG+G++DV G +  +V+SG I +     LA R+  +   + +V+
Sbjct: 3   MAASVRILGIDPGSRVTGFGVIDVRGRDHFYVASGCIKTPADAPLADRIAVIVRHIGEVV 62

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             ++P++AAVEQVFVN +  +TL LGQAR  A+ +    ++PVSEY    +K+AV+G G 
Sbjct: 63  AVYKPQQAAVEQVFVNVNPASTLMLGQARGAALAALVSHKLPVSEYTALQVKQAVVGKGK 122

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHA 155
             K+Q+  M+  ++  S     DAAD LA+A+ HA
Sbjct: 123 AAKEQVQHMVVQMLGLSGTPQADAADGLAVALTHA 157


>gi|261378951|ref|ZP_05983524.1| crossover junction endodeoxyribonuclease RuvC [Neisseria cinerea
           ATCC 14685]
 gi|269144652|gb|EEZ71070.1| crossover junction endodeoxyribonuclease RuvC [Neisseria cinerea
           ATCC 14685]
          Length = 178

 Score =  124 bits (312), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 68/160 (42%), Positives = 104/160 (65%), Gaps = 10/160 (6%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M  ++RI+GIDPG R TG+G++DV G +  +V+SG I +    +LA R+  +   + +V+
Sbjct: 1   MTATVRILGIDPGSRVTGFGVIDVRGRDHFYVASGCIKTPANAALADRIAVIVRHIGEVV 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             ++P++AAVEQVFVN +  +TL LGQAR  A+ +     +PVSEY    +K+AV+G G 
Sbjct: 61  TVYKPQQAAVEQVFVNVNPASTLMLGQARGAALAALVSHGLPVSEYTALQVKQAVVGKGK 120

Query: 121 GDKKQI-HMMLKML----MPESFFKGKDAADALAIAVCHA 155
             K+Q+ HM+++ML     P+S     DAAD LA+A+ HA
Sbjct: 121 AAKEQVQHMVVQMLGLSGTPQS-----DAADGLAVALTHA 155


>gi|11279725|pir||C81857 crossover junction endoribonuclease (EC 3.1.22.4) NMA1631
           [imported] - Neisseria meningitidis (strain Z2491
           serogroup A)
 gi|121052431|emb|CAM08767.1| crossover junction endodeoxyribonuclease [Neisseria meningitidis
           Z2491]
          Length = 180

 Score =  124 bits (312), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 64/155 (41%), Positives = 99/155 (63%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M  ++RI+GIDPG R TG+G++DV G +  +V+SG I +     LA R+  +   + +V+
Sbjct: 3   MSATVRILGIDPGSRVTGFGVIDVRGRDHFYVASGCIKTPADAPLADRIAVIVRHIGEVV 62

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             ++P++AAVEQVFVN +  +TL LGQAR  A+ +    ++PVSEY    +K+AV+G G 
Sbjct: 63  TVYKPQQAAVEQVFVNVNPASTLMLGQARGAALAALVSHKLPVSEYTALQVKQAVVGKGK 122

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHA 155
             K+Q+  M+  ++  S     DAAD LA+A+ HA
Sbjct: 123 AAKEQVQHMVVQMLGLSGTPQPDAADGLAVALTHA 157


>gi|218768423|ref|YP_002342935.1| Holliday junction resolvase [Neisseria meningitidis Z2491]
 gi|20978752|sp|Q9JTU3|RUVC_NEIMA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|319410668|emb|CBY91044.1| crossover junction endodeoxyribonuclease RuvC (Holliday junction
           nuclease RuvC; Holliday junction resolvase RuvC)
           [Neisseria meningitidis WUE 2594]
          Length = 178

 Score =  124 bits (311), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 64/155 (41%), Positives = 99/155 (63%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M  ++RI+GIDPG R TG+G++DV G +  +V+SG I +     LA R+  +   + +V+
Sbjct: 1   MSATVRILGIDPGSRVTGFGVIDVRGRDHFYVASGCIKTPADAPLADRIAVIVRHIGEVV 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             ++P++AAVEQVFVN +  +TL LGQAR  A+ +    ++PVSEY    +K+AV+G G 
Sbjct: 61  TVYKPQQAAVEQVFVNVNPASTLMLGQARGAALAALVSHKLPVSEYTALQVKQAVVGKGK 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHA 155
             K+Q+  M+  ++  S     DAAD LA+A+ HA
Sbjct: 121 AAKEQVQHMVVQMLGLSGTPQPDAADGLAVALTHA 155


>gi|254805201|ref|YP_003083422.1| crossover junction endodeoxyribonuclease RuvC [Neisseria
           meningitidis alpha14]
 gi|254668743|emb|CBA06590.1| crossover junction endodeoxyribonuclease RuvC [Neisseria
           meningitidis alpha14]
          Length = 178

 Score =  124 bits (311), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 64/155 (41%), Positives = 99/155 (63%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M  ++RI+GIDPG R TG+G++DV G +  +V+SG I +     LA R+  +   + +V+
Sbjct: 1   MSATVRILGIDPGSRVTGFGVIDVRGRDHFYVASGCIKTPADAPLADRIAVIVRHIGEVV 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             ++P++AAVEQVFVN +  +TL LGQAR  A+ +    ++PVSEY    +K+AV+G G 
Sbjct: 61  AVYKPQQAAVEQVFVNVNPASTLMLGQARGAALAALVSHKLPVSEYTALQVKQAVVGKGK 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHA 155
             K+Q+  M+  ++  S     DAAD LA+A+ HA
Sbjct: 121 AAKEQVQHMVVQMLGLSGTPQADAADGLAVALTHA 155


>gi|121635109|ref|YP_975354.1| Holliday junction resolvase [Neisseria meningitidis FAM18]
 gi|120866815|emb|CAM10573.1| crossover junction endodeoxyribonuclease [Neisseria meningitidis
           FAM18]
          Length = 180

 Score =  124 bits (310), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 65/155 (41%), Positives = 99/155 (63%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M  ++RI+GIDPG R TG+GI+DV G +  +V+SG I +     LA R+  +   + +V+
Sbjct: 3   MSATVRILGIDPGSRVTGFGIIDVRGRDHFYVASGCIKTPPDAPLADRIAVIVRHIGEVV 62

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             ++P++AAVEQVFVN +  +TL LGQAR  A+ +    ++PVSEY    +K+AV+G G 
Sbjct: 63  AVYKPQQAAVEQVFVNVNPASTLMLGQARGAALAALVSHKLPVSEYTALQVKQAVVGKGK 122

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHA 155
             K+Q+  M+  ++  S     DAAD LA+A+ HA
Sbjct: 123 AAKEQVQHMVVQMLGLSGTPQADAADGLAVALTHA 157


>gi|222055418|ref|YP_002537780.1| crossover junction endodeoxyribonuclease RuvC [Geobacter sp.
           FRC-32]
 gi|254767474|sp|B9LZC6|RUVC_GEOSF RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|221564707|gb|ACM20679.1| crossover junction endodeoxyribonuclease RuvC [Geobacter sp.
           FRC-32]
          Length = 173

 Score =  124 bits (310), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 61/152 (40%), Positives = 97/152 (63%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++I+GIDPG R TG+GIV   G+ L  V +G I +   +    RL ++Y  L+++I+ +R
Sbjct: 1   MKILGIDPGSRITGYGIVTKEGNRLIHVDNGAIFTDSAKDFPSRLKRIYGSLSEIIETYR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  AVE +F + +  + LKLGQAR  AI++   A + V EY    +K+AV+G G   K+
Sbjct: 61  PDAVAVENIFFSNNVQSALKLGQARGAAIVAGVNAGLDVFEYTALQVKQAVVGNGKAAKQ 120

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
           Q+  M+K+L+       +DA+DALA+A+CHA+
Sbjct: 121 QVQQMIKVLLNLPEIAQEDASDALAVAICHAH 152


>gi|187611526|sp|A1KUM5|RUVC_NEIMF RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|254672932|emb|CBA07309.1| crossover junction endodeoxyribonuclease RuvC [Neisseria
           meningitidis alpha275]
 gi|325132399|gb|EGC55092.1| crossover junction endodeoxyribonuclease RuvC [Neisseria
           meningitidis M6190]
 gi|325136537|gb|EGC59141.1| crossover junction endodeoxyribonuclease RuvC [Neisseria
           meningitidis M0579]
 gi|325138388|gb|EGC60956.1| crossover junction endodeoxyribonuclease RuvC [Neisseria
           meningitidis ES14902]
 gi|325142619|gb|EGC65011.1| crossover junction endodeoxyribonuclease RuvC [Neisseria
           meningitidis 961-5945]
 gi|325198554|gb|ADY94010.1| crossover junction endodeoxyribonuclease RuvC [Neisseria
           meningitidis G2136]
 gi|325204404|gb|ADY99857.1| crossover junction endodeoxyribonuclease RuvC [Neisseria
           meningitidis M01-240355]
          Length = 178

 Score =  124 bits (310), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 65/155 (41%), Positives = 99/155 (63%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M  ++RI+GIDPG R TG+GI+DV G +  +V+SG I +     LA R+  +   + +V+
Sbjct: 1   MSATVRILGIDPGSRVTGFGIIDVRGRDHFYVASGCIKTPPDAPLADRIAVIVRHIGEVV 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             ++P++AAVEQVFVN +  +TL LGQAR  A+ +    ++PVSEY    +K+AV+G G 
Sbjct: 61  AVYKPQQAAVEQVFVNVNPASTLMLGQARGAALAALVSHKLPVSEYTALQVKQAVVGKGK 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHA 155
             K+Q+  M+  ++  S     DAAD LA+A+ HA
Sbjct: 121 AAKEQVQHMVVQMLGLSGTPQADAADGLAVALTHA 155


>gi|152979958|ref|YP_001351999.1| Holliday junction resolvase [Janthinobacterium sp. Marseille]
 gi|166233199|sp|A6SUQ2|RUVC_JANMA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|151280035|gb|ABR88445.1| crossover junction endodeoxyribonuclease [Janthinobacterium sp.
           Marseille]
          Length = 180

 Score =  124 bits (310), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 64/156 (41%), Positives = 99/156 (63%), Gaps = 1/156 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++I+GIDPGLR TG+G+++  G+ L +++SGTI       L  RL  +   +++VI  + 
Sbjct: 1   MKILGIDPGLRTTGFGVIEKHGNKLTYIASGTI-KTPDADLPQRLKTILSSVSEVIATYH 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ AA+E+VFVN +  +TL LGQAR  AI +   A + V+EY    +K+AV+G G   K 
Sbjct: 60  PDCAAIEKVFVNVNPQSTLLLGQARGAAICALVHADLLVAEYTALQVKQAVVGQGKAQKA 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           Q+  M++ L+  S   G DAADAL +A+CHA+   +
Sbjct: 120 QVQDMVQRLLKLSGLPGTDAADALGVAICHAHSGEA 155


>gi|147677360|ref|YP_001211575.1| Holliday junction resolvase [Pelotomaculum thermopropionicum SI]
 gi|189046070|sp|A5D3F9|RUVC_PELTS RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|146273457|dbj|BAF59206.1| holliday junction resolvasome, endonuclease subunit [Pelotomaculum
           thermopropionicum SI]
          Length = 164

 Score =  124 bits (310), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 66/153 (43%), Positives = 92/153 (60%), Gaps = 3/153 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+G+DPG   TG+GIV+ AG+    V  G I +      A RL  LY  L ++IK  RPE
Sbjct: 3   IMGVDPGTAITGYGIVEYAGNRFALVECGCIRTMPGVPPAERLQALYGELVEIIKRHRPE 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             AVE++F NK+    L +GQAR + +L+ A + +PV EY P  +K+AV G G   K Q+
Sbjct: 63  HFAVEEIFFNKNTRTALTVGQARGVTVLAAAQSGLPVFEYTPLQVKQAVAGFGRAGKTQV 122

Query: 127 HMMLKML--MPESFFKGKDAADALAIAVCHAYH 157
             M+K +  +PE      D ADALA+A+CHA+H
Sbjct: 123 QYMVKTILALPE-VPAPDDVADALAVAICHAHH 154


>gi|330828880|ref|YP_004391832.1| Crossover junction endodeoxyribonuclease ruvC [Aeromonas veronii
           B565]
 gi|328804016|gb|AEB49215.1| Crossover junction endodeoxyribonuclease ruvC [Aeromonas veronii
           B565]
          Length = 169

 Score =  124 bits (310), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 67/164 (40%), Positives = 101/164 (61%), Gaps = 8/164 (4%)

Query: 8   IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQ---SLAFRLCQLYEGLTDVIKNWR 64
           +GIDPG R TG+G++ V G    ++ SG    C+R     L  RL Q+Y+G+ ++I  ++
Sbjct: 1   MGIDPGSRITGYGVIRVVGGKAEYLGSG----CIRTDCGELPERLKQVYDGVCEIITQFK 56

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P E A+E+VF+ ++A + LKLGQAR  AI++   A +PVSEY+   IK+AV+G G   K+
Sbjct: 57  PTEFAIERVFMARNADSALKLGQARGSAIVAAVNAYLPVSEYSATQIKQAVVGTGGAAKE 116

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
           Q+  M+  L+  S     DAADAL +A+CH  H      K+A +
Sbjct: 117 QVQHMVTHLLKLSATPQADAADALGVALCH-LHTRQSLIKMAGR 159


>gi|269215241|ref|ZP_05987996.2| crossover junction endodeoxyribonuclease RuvC [Neisseria lactamica
           ATCC 23970]
 gi|269207977|gb|EEZ74432.1| crossover junction endodeoxyribonuclease RuvC [Neisseria lactamica
           ATCC 23970]
          Length = 178

 Score =  124 bits (310), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 64/155 (41%), Positives = 99/155 (63%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M  ++RI+GIDPG R TG+G++DV G +  +V+SG I +     LA R+  +   + +V+
Sbjct: 1   MAATVRILGIDPGSRVTGFGVIDVRGRDHFYVASGCIKTPADAPLADRIAVIVRHIGEVV 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             ++P++AAVEQVFVN +  +TL LGQAR  A+ +    ++PVSEY    +K+AV+G G 
Sbjct: 61  AVYKPQQAAVEQVFVNVNPASTLMLGQARGAALAALVSHKLPVSEYTALQVKQAVVGKGK 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHA 155
             K+Q+  M+  ++  S     DAAD LA+A+ HA
Sbjct: 121 AAKEQVQHMVVQMLGLSGTPQADAADGLAVALTHA 155


>gi|261364067|ref|ZP_05976950.1| crossover junction endodeoxyribonuclease RuvC [Neisseria mucosa
           ATCC 25996]
 gi|288568109|gb|EFC89669.1| crossover junction endodeoxyribonuclease RuvC [Neisseria mucosa
           ATCC 25996]
          Length = 182

 Score =  123 bits (309), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 61/153 (39%), Positives = 98/153 (64%)

Query: 3   KSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
           ++ RI+GIDPG R TG+G++DV G    +++SG I +     L+ R+  +   + ++++ 
Sbjct: 6   QTTRILGIDPGSRVTGFGVIDVRGREHFYIASGCIKTPPDAPLSERIAVIVRHIDEIVRT 65

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
           +RP++AAVEQVFVN +  +TL LGQAR  A+ +  +  +PVSEY    +K+AV+G G   
Sbjct: 66  YRPQQAAVEQVFVNVNPASTLMLGQARGAALAALVMHGLPVSEYTALQVKQAVVGKGKAA 125

Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAIAVCHA 155
           K+Q+  M+  ++  S     DAAD LA+A+ HA
Sbjct: 126 KEQVQHMVVQMLSLSGTPQSDAADGLAVALTHA 158


>gi|312882584|ref|ZP_07742324.1| Holliday junction resolvase [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309369744|gb|EFP97256.1| Holliday junction resolvase [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 173

 Score =  123 bits (309), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 64/149 (42%), Positives = 96/149 (64%), Gaps = 1/149 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G +L ++ SG I +   Q L  RL Q+Y G++++I  ++PE
Sbjct: 4   ILGIDPGSRITGYGVIRQNGRHLQYLGSGCIRTS-EQDLPGRLKQIYAGVSEIITQFQPE 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ ++A + LKLGQAR  AI++     + V EYA   IK+AV+G G  DK Q+
Sbjct: 63  VFAIEQVFMARNADSALKLGQARGSAIVAAVNNDLEVFEYAARLIKQAVVGTGAADKAQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHA 155
             M++ ++        DAADAL +A+CHA
Sbjct: 123 QHMVQQMLKLPAKPQADAADALGVAICHA 151


>gi|328953689|ref|YP_004371023.1| Crossover junction endodeoxyribonuclease ruvC [Desulfobacca
           acetoxidans DSM 11109]
 gi|328454013|gb|AEB09842.1| Crossover junction endodeoxyribonuclease ruvC [Desulfobacca
           acetoxidans DSM 11109]
          Length = 167

 Score =  123 bits (309), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 59/152 (38%), Positives = 96/152 (63%), Gaps = 1/152 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+G+DPG R TG+G++   G++L  + SG I    + S + RL ++Y+ L  +I  + PE
Sbjct: 5   ILGVDPGSRATGYGLIAATGESLLHLESGFIALPAQLSHSQRLARIYQRLESLISRYNPE 64

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             AVE VF+  +  + LKLGQ R + +L+   A IPV EY+P T+KKA++G G   K Q+
Sbjct: 65  ALAVEAVFLAHNVQSALKLGQVRGVVLLAAGQADIPVFEYSPLTLKKAIVGYGQATKTQV 124

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHA 158
            +M++ L+  +     + ADALA+++CH +H+
Sbjct: 125 LLMVENLLGLT-LNNHNTADALALSLCHHFHS 155


>gi|307266571|ref|ZP_07548103.1| crossover junction endodeoxyribonuclease RuvC [Thermoanaerobacter
           wiegelii Rt8.B1]
 gi|306918425|gb|EFN48667.1| crossover junction endodeoxyribonuclease RuvC [Thermoanaerobacter
           wiegelii Rt8.B1]
          Length = 165

 Score =  123 bits (309), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 57/156 (36%), Positives = 96/156 (61%), Gaps = 1/156 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPG+   G+GI+D   +    +  G + +      A RL  +Y G+  +IK++R
Sbjct: 1   MRVLGIDPGIAIMGYGIIDYKSNKFTVIDYGAVTTKAGIDKALRLHDIYNGIISLIKSYR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  A+E++F NK+A   + +G++R ++IL+   + I V EY P  +K+AV+G G  DK 
Sbjct: 61  PDVVAIEELFYNKNAKTVITIGESRGVSILAAVNSGIKVFEYTPLQVKQAVVGYGRADKY 120

Query: 125 QIHMMLKMLMP-ESFFKGKDAADALAIAVCHAYHAN 159
           Q+  M+++L+  E   K  D ADALA+A+CH +  N
Sbjct: 121 QVQQMVRVLLNLEDVPKPDDVADALAVAICHCHSNN 156


>gi|329916097|ref|ZP_08276356.1| Crossover junction endodeoxyribonuclease RuvC [Oxalobacteraceae
           bacterium IMCC9480]
 gi|327544766|gb|EGF30172.1| Crossover junction endodeoxyribonuclease RuvC [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 180

 Score =  123 bits (309), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 64/155 (41%), Positives = 103/155 (66%), Gaps = 1/155 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGLR TG+G+++  G  L +++SGTI   +   L  RL  +  G+++V+  +R
Sbjct: 1   MRILGIDPGLRITGFGVIEKHGHKLSYIASGTI-KTLDIDLPARLKTILAGVSEVVATYR 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ +A+E+VFVN +  +TL LGQAR  AI +   A + V+EY    +K+AV+G G   K+
Sbjct: 60  PDCSAIEKVFVNVNPQSTLLLGQARGAAICALVSADLLVAEYTALQVKQAVVGQGKAQKE 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHAN 159
           Q+  M++ L+  S     DAADAL +A+CHA++++
Sbjct: 120 QVQDMVQRLLMLSGKPTADAADALGVAICHAHNSD 154


>gi|221065148|ref|ZP_03541253.1| crossover junction endodeoxyribonuclease RuvC [Comamonas
           testosteroni KF-1]
 gi|220710171|gb|EED65539.1| crossover junction endodeoxyribonuclease RuvC [Comamonas
           testosteroni KF-1]
          Length = 182

 Score =  123 bits (309), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 68/151 (45%), Positives = 96/151 (63%), Gaps = 2/151 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQ--SLAFRLCQLYEGLTDVIKN 62
           +RI+GIDPGL+ TG+G++D+ G  L +V+SGTI +   +   L  RL  L++G+++V   
Sbjct: 1   MRILGIDPGLQTTGFGVIDMDGQRLSYVASGTIRTNKMELGDLPGRLKVLFDGISEVASR 60

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
           ++PE AAVE VFVN +  +TL LGQAR  A+ +   A + VSEY    +KKAV G G   
Sbjct: 61  YQPEVAAVEIVFVNVNPQSTLLLGQARGAALTALVNANLAVSEYTALQMKKAVTGHGRAA 120

Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAIAVC 153
           K QI  M+K L+      G DAADAL +A+ 
Sbjct: 121 KNQIQEMVKRLLQLPGLPGTDAADALGLAIT 151


>gi|298369672|ref|ZP_06980989.1| crossover junction endodeoxyribonuclease RuvC [Neisseria sp. oral
           taxon 014 str. F0314]
 gi|298282229|gb|EFI23717.1| crossover junction endodeoxyribonuclease RuvC [Neisseria sp. oral
           taxon 014 str. F0314]
          Length = 182

 Score =  123 bits (309), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 62/153 (40%), Positives = 98/153 (64%)

Query: 3   KSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
           ++ RI+GIDPG R TG+G++DV G    +V+SG I +     L+ R+  +   + ++++ 
Sbjct: 6   QTTRILGIDPGSRVTGFGVIDVCGREHFYVASGCIKTPPDAPLSERIAVIVRHIGEIVRL 65

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
           +RP++AAVEQVFVN +  +TL LGQAR  A+ +  +  +PVSEY    +K+AV+G G   
Sbjct: 66  YRPQQAAVEQVFVNVNPASTLMLGQARGAALAALVMHELPVSEYTALQVKQAVVGKGKAA 125

Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAIAVCHA 155
           K+Q+  M+  ++  S     DAAD LA+A+ HA
Sbjct: 126 KEQVQHMVVQMLSLSGTPQSDAADGLAVALTHA 158


>gi|71275804|ref|ZP_00652088.1| Crossover junction endodeoxyribonuclease RuvC [Xylella fastidiosa
           Dixon]
 gi|71900403|ref|ZP_00682536.1| Crossover junction endodeoxyribonuclease RuvC [Xylella fastidiosa
           Ann-1]
 gi|170730216|ref|YP_001775649.1| Holliday junction resolvase [Xylella fastidiosa M12]
 gi|71163382|gb|EAO13100.1| Crossover junction endodeoxyribonuclease RuvC [Xylella fastidiosa
           Dixon]
 gi|71729835|gb|EAO31933.1| Crossover junction endodeoxyribonuclease RuvC [Xylella fastidiosa
           Ann-1]
 gi|167965009|gb|ACA12019.1| holliday junction resolvase, endodeoxyribonuclease [Xylella
           fastidiosa M12]
          Length = 181

 Score =  123 bits (308), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 70/153 (45%), Positives = 99/153 (64%), Gaps = 3/153 (1%)

Query: 6   RIIGIDPGLRRTGWGIVDVAGDNLC--FVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           RI+GIDPG +RTG G++DV  +  C   V    +V   + S A RL QL  GL+ VI+ +
Sbjct: 11  RILGIDPGSQRTGVGVIDV-DEYGCSHHVYHAPLVLLGQSSFAGRLKQLLLGLSAVIEEY 69

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P+E A+E+VF++K+A + LKLGQAR +AI +  L  +PV EYA   IK AV+G G  DK
Sbjct: 70  SPKEVAIEKVFMSKNADSALKLGQARGVAISAVVLRDLPVHEYAARQIKLAVVGRGGADK 129

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
           +QI  M+ +++        DAADALA+A+ HA+
Sbjct: 130 QQIQHMVGVMLNLQGRLQSDAADALAVAITHAH 162


>gi|297544490|ref|YP_003676792.1| crossover junction endodeoxyribonuclease RuvC [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
 gi|296842265|gb|ADH60781.1| crossover junction endodeoxyribonuclease RuvC [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
          Length = 165

 Score =  123 bits (308), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 57/156 (36%), Positives = 96/156 (61%), Gaps = 1/156 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPG+   G+GI+D   +    +  G + +      A RL  +Y G+T +IK++ 
Sbjct: 1   MRVLGIDPGIATMGYGIIDYKSNKFTVIDYGAVTTKAGIDKALRLHDIYNGITSLIKSYC 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  A+E++F NK+A   + +G++R ++IL+   + I V EY P  +K+AV+G G  DK 
Sbjct: 61  PDVVAIEELFYNKNAKTVITIGESRGVSILAAVNSGIKVFEYTPLQVKQAVVGYGKADKH 120

Query: 125 QIHMMLKMLMP-ESFFKGKDAADALAIAVCHAYHAN 159
           Q+  M+K+L+  +   K  D ADALA+A+CH +  N
Sbjct: 121 QVQQMVKVLLNLDQIPKPDDVADALAVAICHCHSNN 156


>gi|91786981|ref|YP_547933.1| Holliday junction resolvase [Polaromonas sp. JS666]
 gi|123165277|sp|Q12EK7|RUVC_POLSJ RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|91696206|gb|ABE43035.1| crossover junction endodeoxyribonuclease RuvC [Polaromonas sp.
           JS666]
          Length = 182

 Score =  123 bits (308), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 67/158 (42%), Positives = 100/158 (63%), Gaps = 2/158 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSC--VRQSLAFRLCQLYEGLTDVIKN 62
           +RI+GIDPGL+  G+G+V+V G +L +V+SGTI +   VR  L  RL  L++G+ +V++ 
Sbjct: 1   MRILGIDPGLQIAGFGVVEVDGPHLHYVASGTIKTTHMVRGDLPARLKVLFDGVREVVQR 60

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
           ++P+ A+VE VF N +  ATL LGQAR   I +   + + V+EY    +KKAV G G   
Sbjct: 61  YQPDMASVEIVFTNVNPQATLLLGQARGACITALVSSDLTVAEYTALQMKKAVAGYGKAG 120

Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           K ++  M+  L+      GKDAADAL +A+ HA+   S
Sbjct: 121 KAEVQQMVMRLLKLPALPGKDAADALGLAITHAHAGRS 158


>gi|241759178|ref|ZP_04757286.1| crossover junction endodeoxyribonuclease RuvC [Neisseria flavescens
           SK114]
 gi|241320597|gb|EER56874.1| crossover junction endodeoxyribonuclease RuvC [Neisseria flavescens
           SK114]
          Length = 181

 Score =  123 bits (308), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 63/153 (41%), Positives = 97/153 (63%)

Query: 3   KSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
           +  RI+GIDPG R TG+G++DV G    +V+SG I +    SL+ R+  +   + ++I++
Sbjct: 5   QPTRILGIDPGSRVTGFGVIDVHGREHHYVASGCIKTPTGASLSERIAVIVRHIDEIIRH 64

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
           ++P +AA+EQVFVN +  ATL LGQAR  AI +  +  +PV EY    +K+AV+G G   
Sbjct: 65  YQPHQAAIEQVFVNVNPAATLMLGQARGAAIAALVMHDLPVFEYTALQVKQAVVGKGKAA 124

Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAIAVCHA 155
           K+Q+  M+  ++  S     DAAD LA+A+ HA
Sbjct: 125 KEQVQHMVVQMLALSGTPQADAADGLAVALTHA 157


>gi|134093538|ref|YP_001098613.1| Holliday junction resolvase [Herminiimonas arsenicoxydans]
 gi|166233198|sp|A4G1U7|RUVC_HERAR RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|133737441|emb|CAL60484.1| Crossover junction endodeoxyribonuclease ruvC (Holliday junction
           nuclease ruvC) (Holliday juction resolvase ruvC)
           [Herminiimonas arsenicoxydans]
          Length = 180

 Score =  122 bits (307), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 64/156 (41%), Positives = 99/156 (63%), Gaps = 1/156 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++I+GIDPGLR TG+G+++  G+ L +++SGTI       L  RL  +   + +VI  ++
Sbjct: 1   MKILGIDPGLRTTGFGVIEKQGNKLSYIASGTI-KTPDADLPQRLKTILVSVAEVIATYK 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ AA+E+VFVN +  +TL LGQAR  AI +   A + V+EY    +K+AV+G G   K 
Sbjct: 60  PDCAAIEKVFVNVNPQSTLLLGQARGAAICALVGADLFVAEYTALQVKQAVVGQGKAQKA 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           Q+  M++ L+  S   G DAADAL +A+CHA+   +
Sbjct: 120 QVQDMVQRLLKLSGLPGTDAADALGVAICHAHSGEA 155


>gi|28198788|ref|NP_779102.1| Holliday junction resolvase [Xylella fastidiosa Temecula1]
 gi|32130013|sp|Q87D03|RUVC_XYLFT RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|28056879|gb|AAO28751.1| holliday junction resolvase, endodeoxyribonuclease [Xylella
           fastidiosa Temecula1]
 gi|307579941|gb|ADN63910.1| Holliday junction resolvase [Xylella fastidiosa subsp. fastidiosa
           GB514]
          Length = 173

 Score =  122 bits (307), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 70/153 (45%), Positives = 99/153 (64%), Gaps = 3/153 (1%)

Query: 6   RIIGIDPGLRRTGWGIVDVAGDNLC--FVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           RI+GIDPG +RTG G++DV  +  C   V    +V   + S A RL QL  GL+ VI+ +
Sbjct: 3   RILGIDPGSQRTGVGVIDV-DEYGCSHHVYHAPLVLLGQSSFAGRLKQLLLGLSAVIEEY 61

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P+E A+E+VF++K+A + LKLGQAR +AI +  L  +PV EYA   IK AV+G G  DK
Sbjct: 62  SPKEVAIEKVFMSKNADSALKLGQARGVAISAVVLRDLPVHEYAARQIKLAVVGRGGADK 121

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
           +QI  M+ +++        DAADALA+A+ HA+
Sbjct: 122 QQIQHMVGVMLNLQGRLQSDAADALAVAITHAH 154


>gi|161378163|ref|NP_299191.2| Holliday junction resolvase [Xylella fastidiosa 9a5c]
 gi|20978755|sp|Q9PC76|RUVC_XYLFA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
          Length = 173

 Score =  122 bits (307), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 70/153 (45%), Positives = 99/153 (64%), Gaps = 3/153 (1%)

Query: 6   RIIGIDPGLRRTGWGIVDVAGDNLC--FVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           RI+GIDPG +RTG G++DV  +  C   V    +V   + S A RL QL  GL+ VI+ +
Sbjct: 3   RILGIDPGSQRTGVGVIDV-DEYGCSRHVYHAPLVLLGQSSFAGRLKQLLLGLSAVIEEY 61

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P+E A+E+VF++K+A + LKLGQAR +AI +  L  +PV EYA   IK AV+G G  DK
Sbjct: 62  SPKEVAIEKVFMSKNADSALKLGQARGVAISAVVLRDLPVHEYAARQIKLAVVGRGGADK 121

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
           +QI  M+ +++        DAADALA+A+ HA+
Sbjct: 122 QQIQHMVGVMLNLQGRLQSDAADALAVAITHAH 154


>gi|327481498|gb|AEA84808.1| Holliday junction resolvase [Pseudomonas stutzeri DSM 4166]
          Length = 174

 Score =  122 bits (307), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 65/157 (41%), Positives = 99/157 (63%), Gaps = 7/157 (4%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQS---LAFRLCQLYEGLTDVIKNW 63
           I+GIDPG R TG+G+V   G    +V+SG    C+R     L+ RL  ++ G+++VI+ +
Sbjct: 4   ILGIDPGSRITGYGVVRDTGRGCEYVASG----CIRTGSGELSERLRAVFSGVSEVIRTY 59

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P    +EQVF+ ++A + LKLGQAR  AI++ A A + ++EY    +K+A+ G G  DK
Sbjct: 60  GPVTMGIEQVFMARNADSALKLGQARGAAIVAGAEAGLQIAEYTATQVKQAIAGTGGADK 119

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           +Q+ MM+  L+        DA+DALAIA+CHA+H  S
Sbjct: 120 QQVQMMVMHLLKLLEKPQIDASDALAIALCHAHHGQS 156


>gi|326390111|ref|ZP_08211672.1| crossover junction endodeoxyribonuclease RuvC [Thermoanaerobacter
           ethanolicus JW 200]
 gi|325993759|gb|EGD52190.1| crossover junction endodeoxyribonuclease RuvC [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 165

 Score =  122 bits (307), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 57/156 (36%), Positives = 95/156 (60%), Gaps = 1/156 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPG+   G+GI+D   +    +  G + +      A RL  +Y G+  +IK++ 
Sbjct: 1   MRVLGIDPGIAIMGYGIIDYKSNKFTVIDYGAVTTKAGIDKALRLHDIYNGIISLIKSYS 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  A+E++F NK+A   + +G++R ++IL+   + I V EY P  +K+AV+G G  DK 
Sbjct: 61  PDVVAIEELFYNKNAKTVITIGESRGVSILAAVNSGIKVFEYTPLQVKQAVVGYGRADKY 120

Query: 125 QIHMMLKMLMP-ESFFKGKDAADALAIAVCHAYHAN 159
           Q+  M+K+L+  E   K  D ADALA+A+CH +  N
Sbjct: 121 QVQQMVKVLLNLEEIPKPDDVADALAVAICHCHSNN 156


>gi|323496588|ref|ZP_08101641.1| Holliday junction resolvase [Vibrio sinaloensis DSM 21326]
 gi|323318334|gb|EGA71292.1| Holliday junction resolvase [Vibrio sinaloensis DSM 21326]
          Length = 173

 Score =  122 bits (307), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 64/152 (42%), Positives = 98/152 (64%), Gaps = 7/152 (4%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQS---LAFRLCQLYEGLTDVIKNW 63
           I+GIDPG R TG+G++   G +L ++ SG    C+R S   L  RL Q++ G++++I  +
Sbjct: 4   ILGIDPGSRITGYGVIRQNGRHLQYLGSG----CIRTSEKELPGRLKQIFAGVSEIITQF 59

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +P+  A+EQVF+ ++A + LKLGQAR  AI++     +PV EYA   IK+AV G G  DK
Sbjct: 60  QPDVFAIEQVFMARNADSALKLGQARGSAIVAAVNNDLPVYEYAARLIKQAVTGTGGADK 119

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHA 155
           +Q+  M++ ++        DAADAL +A+CHA
Sbjct: 120 EQVQHMVQQMLKLPGKPQADAADALGVAICHA 151


>gi|108804161|ref|YP_644098.1| crossover junction endodeoxyribonuclease RuvC [Rubrobacter
           xylanophilus DSM 9941]
 gi|123368178|sp|Q1AWE2|RUVC_RUBXD RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|108765404|gb|ABG04286.1| crossover junction endodeoxyribonuclease RuvC [Rubrobacter
           xylanophilus DSM 9941]
          Length = 179

 Score =  122 bits (306), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 59/151 (39%), Positives = 91/151 (60%), Gaps = 1/151 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG    GWG+V   G  L +V  G I +     +  RL +L+ G+T++I+ +RP 
Sbjct: 10  ILGIDPGTATMGWGVVRQEGSRLRYVQHGAITTPSGWGMPRRLDRLFAGVTELIRGYRPS 69

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             AVE++F N +    + +GQAR +A+L+   A + V EY P  +K+A+   G  DK+Q+
Sbjct: 70  AVAVEELFFNTNVTTAITVGQARGVALLAAYRAGVEVFEYTPLQVKQAITSYGRADKRQV 129

Query: 127 HMMLKMLMP-ESFFKGKDAADALAIAVCHAY 156
             M++ L+   S  +  DAAD LAIA+CHA+
Sbjct: 130 QEMVRALLGLRSIPRPDDAADGLAIAICHAF 160


>gi|53804472|ref|YP_113685.1| crossover junction endodeoxyribonuclease RuvC [Methylococcus
           capsulatus str. Bath]
 gi|81682300|sp|Q609L2|RUVC_METCA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|53758233|gb|AAU92524.1| crossover junction endodeoxyribonuclease RuvC [Methylococcus
           capsulatus str. Bath]
          Length = 165

 Score =  122 bits (306), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 65/158 (41%), Positives = 100/158 (63%), Gaps = 8/158 (5%)

Query: 6   RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQS---LAFRLCQLYEGLTDVIKN 62
           R++GIDPG R TG+GI+D  G  +  V++G    C+R        RL +++EG++ +++ 
Sbjct: 3   RVLGIDPGSRVTGYGILDWTGKPV-LVAAG----CIRTETDDFPERLRRIFEGISRIVEE 57

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
           +RPEE AVEQVF++K+A + LKLGQAR  AI +     +PV EYA   +K A++G G  D
Sbjct: 58  FRPEEMAVEQVFMHKNADSALKLGQARGAAICAGVAHGLPVHEYAARQVKLALVGKGSAD 117

Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           K Q+  M+  L+ ++     DA+DAL +A CH +H  +
Sbjct: 118 KAQVQHMVCFLLGQAGPLALDASDALGVAFCHLHHRQT 155


>gi|308389525|gb|ADO31845.1| crossover junction endodeoxyribonuclease [Neisseria meningitidis
           alpha710]
 gi|325130496|gb|EGC53253.1| crossover junction endodeoxyribonuclease RuvC [Neisseria
           meningitidis OX99.30304]
          Length = 178

 Score =  122 bits (306), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 65/155 (41%), Positives = 98/155 (63%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M  ++RI+GIDPG R TG+GI+DV G +  +V+SG I +     LA R+  +   + +V+
Sbjct: 1   MSATVRILGIDPGSRVTGFGIIDVRGRDHFYVASGCIKTPPDAPLADRIAVIVRHIGEVV 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             ++P++AAVEQVFVN +  +TL LGQAR  A+ +     +PVSEY    +K+AV+G G 
Sbjct: 61  AVYKPQQAAVEQVFVNVNPASTLMLGQARGAALAALVSHGLPVSEYTALQVKQAVVGKGK 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHA 155
             K+Q+  M+  ++  S     DAAD LA+A+ HA
Sbjct: 121 AAKEQVQHMVVQMLGLSGTPQADAADGLAVALTHA 155


>gi|304407531|ref|ZP_07389183.1| crossover junction endodeoxyribonuclease RuvC [Paenibacillus
           curdlanolyticus YK9]
 gi|304343482|gb|EFM09324.1| crossover junction endodeoxyribonuclease RuvC [Paenibacillus
           curdlanolyticus YK9]
          Length = 166

 Score =  122 bits (306), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 57/153 (37%), Positives = 94/153 (61%), Gaps = 1/153 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPG+   G+G +D  G  L  V  G+I +        RL Q+YE  + ++  ++
Sbjct: 1   MRVLGIDPGIAIVGFGFIDKDGHKLTPVQYGSIETKAHTPSETRLLQVYESASALMDKYK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  AVE++F N++      +GQAR + IL+ A   +P++EY P  +K+AV+G G  +K+
Sbjct: 61  PDSVAVEKLFFNRNVTTAFDVGQARGVIILAAAQRGLPIAEYTPLQVKQAVVGYGKAEKR 120

Query: 125 QIHMMLKMLMPESFF-KGKDAADALAIAVCHAY 156
           Q+  M++M +  S   K  D ADALA+A+CHA+
Sbjct: 121 QVQEMVRMFLKLSAIPKPDDVADALAVAICHAH 153


>gi|153875114|ref|ZP_02003051.1| Crossover junction endodeoxyribonuclease ruvC [Beggiatoa sp. PS]
 gi|152068423|gb|EDN66950.1| Crossover junction endodeoxyribonuclease ruvC [Beggiatoa sp. PS]
          Length = 155

 Score =  122 bits (306), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 71/155 (45%), Positives = 106/155 (68%), Gaps = 7/155 (4%)

Query: 6   RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVR---QSLAFRLCQLYEGLTDVIKN 62
           RI+GIDPG R TG+G+++V    + +++SG    C+R   +SL  RL ++Y G++ +I+ 
Sbjct: 5   RILGIDPGSRLTGFGVIEVHRQQVIYITSG----CIRTQSKSLPSRLQEIYAGISQIIEQ 60

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
            +P  +AVEQVF+ ++A + LKLGQAR  AI++     + V EYAP  IK+AV+G GH D
Sbjct: 61  AQPTISAVEQVFMYRNADSALKLGQARGAAIVACVQHGLSVYEYAPTQIKQAVVGKGHAD 120

Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYH 157
           K Q+  M+K+L+  S     DAADALA+A+CHA+H
Sbjct: 121 KIQVQHMVKVLLSLSNIPQVDAADALAVALCHAHH 155


>gi|71901780|ref|ZP_00683849.1| Crossover junction endodeoxyribonuclease RuvC [Xylella fastidiosa
           Ann-1]
 gi|71728463|gb|EAO30625.1| Crossover junction endodeoxyribonuclease RuvC [Xylella fastidiosa
           Ann-1]
          Length = 204

 Score =  122 bits (305), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 70/153 (45%), Positives = 99/153 (64%), Gaps = 3/153 (1%)

Query: 6   RIIGIDPGLRRTGWGIVDVAGDNLC--FVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           RI+GIDPG +RTG G++DV  +  C   V    +V   + S A RL QL  GL+ VI+ +
Sbjct: 34  RILGIDPGSQRTGVGVIDV-DEYGCSHHVYHAPLVLLGQSSFAGRLKQLLLGLSAVIEEY 92

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P+E A+E+VF++K+A + LKLGQAR +AI +  L  +PV EYA   IK AV+G G  DK
Sbjct: 93  SPKEVAIEKVFMSKNADSALKLGQARGVAISAVVLRDLPVHEYAARQIKLAVVGRGGADK 152

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
           +QI  M+ +++        DAADALA+A+ HA+
Sbjct: 153 QQIQHMVGVMLNLQGRLQSDAADALAVAITHAH 185


>gi|9107000|gb|AAF84711.1|AE004010_8 holliday junction resolvase, endodeoxyribonuclease [Xylella
           fastidiosa 9a5c]
          Length = 204

 Score =  122 bits (305), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 70/153 (45%), Positives = 99/153 (64%), Gaps = 3/153 (1%)

Query: 6   RIIGIDPGLRRTGWGIVDVAGDNLC--FVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           RI+GIDPG +RTG G++DV  +  C   V    +V   + S A RL QL  GL+ VI+ +
Sbjct: 34  RILGIDPGSQRTGVGVIDV-DEYGCSRHVYHAPLVLLGQSSFAGRLKQLLLGLSAVIEEY 92

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P+E A+E+VF++K+A + LKLGQAR +AI +  L  +PV EYA   IK AV+G G  DK
Sbjct: 93  SPKEVAIEKVFMSKNADSALKLGQARGVAISAVVLRDLPVHEYAARQIKLAVVGRGGADK 152

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
           +QI  M+ +++        DAADALA+A+ HA+
Sbjct: 153 QQIQHMVGVMLNLQGRLQSDAADALAVAITHAH 185


>gi|124265675|ref|YP_001019679.1| Holliday junction resolvase [Methylibium petroleiphilum PM1]
 gi|187611448|sp|A2SD05|RUVC_METPP RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|124258450|gb|ABM93444.1| putative holliday junction endodeoxyribonuclease protein
           [Methylibium petroleiphilum PM1]
          Length = 184

 Score =  122 bits (305), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 65/155 (41%), Positives = 98/155 (63%), Gaps = 2/155 (1%)

Query: 4   SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVS--CVRQSLAFRLCQLYEGLTDVIK 61
           + RI+GIDPGLR TG+G+V+  G  L +++SGT+ +       L  RL  ++EG+ +V  
Sbjct: 2   ATRILGIDPGLRTTGFGVVECEGSRLHYIASGTVRTDALPNGDLPGRLKIIFEGVREVAA 61

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
            ++P+ AAVE VFVN +  +TL LGQAR  A+ +     + V+EY    +KKA++G GH 
Sbjct: 62  RYQPDCAAVEIVFVNVNPQSTLLLGQARGAALAALVSGDLAVAEYTALQMKKAIVGHGHA 121

Query: 122 DKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
            K+Q+  M+  L+       +DAADAL +AVCHA+
Sbjct: 122 RKEQVQAMVARLLSLPGEPSRDAADALGLAVCHAH 156


>gi|182681487|ref|YP_001829647.1| Holliday junction resolvase [Xylella fastidiosa M23]
 gi|182631597|gb|ACB92373.1| crossover junction endodeoxyribonuclease RuvC [Xylella fastidiosa
           M23]
          Length = 204

 Score =  122 bits (305), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 70/153 (45%), Positives = 99/153 (64%), Gaps = 3/153 (1%)

Query: 6   RIIGIDPGLRRTGWGIVDVAGDNLC--FVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           RI+GIDPG +RTG G++DV  +  C   V    +V   + S A RL QL  GL+ VI+ +
Sbjct: 34  RILGIDPGSQRTGVGVIDV-DEYGCSHHVYHAPLVLLGQSSFAGRLKQLLLGLSAVIEEY 92

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P+E A+E+VF++K+A + LKLGQAR +AI +  L  +PV EYA   IK AV+G G  DK
Sbjct: 93  SPKEVAIEKVFMSKNADSALKLGQARGVAISAVVLRDLPVHEYAARQIKLAVVGRGGADK 152

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
           +QI  M+ +++        DAADALA+A+ HA+
Sbjct: 153 QQIQHMVGVMLNLQGRLQSDAADALAVAITHAH 185


>gi|146283145|ref|YP_001173298.1| Holliday junction resolvase [Pseudomonas stutzeri A1501]
 gi|166233288|sp|A4VNA5|RUVC_PSEU5 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|145571350|gb|ABP80456.1| crossover junction endodeoxyribonuclease RuvC [Pseudomonas stutzeri
           A1501]
          Length = 174

 Score =  122 bits (305), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 65/157 (41%), Positives = 99/157 (63%), Gaps = 7/157 (4%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQS---LAFRLCQLYEGLTDVIKNW 63
           I+GIDPG R TG+G+V   G    +V+SG    C+R     L+ RL  ++ G+++VI+ +
Sbjct: 4   ILGIDPGSRITGYGVVRDTGRGCEYVASG----CIRTGSGELSERLRAVFSGVSEVIRTY 59

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P    +EQVF+ ++A + LKLGQAR  AI++ A A + ++EY    +K+A+ G G  DK
Sbjct: 60  GPVTMGIEQVFMARNADSALKLGQARGAAIVAGAEAGLQIAEYTATQVKQAIAGTGGADK 119

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           +Q+ MM+  L+        DA+DALAIA+CHA+H  S
Sbjct: 120 QQVQMMVMHLLKLLEKPQIDASDALAIALCHAHHRQS 156


>gi|323702067|ref|ZP_08113735.1| crossover junction endodeoxyribonuclease RuvC [Desulfotomaculum
           nigrificans DSM 574]
 gi|323532949|gb|EGB22820.1| crossover junction endodeoxyribonuclease RuvC [Desulfotomaculum
           nigrificans DSM 574]
          Length = 163

 Score =  121 bits (304), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 64/156 (41%), Positives = 98/156 (62%), Gaps = 3/156 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG   TG+G+++  G++   V    + +    SL  RL  LY+ +  +I  ++P+
Sbjct: 3   ILGIDPGTAITGYGVLEFKGNSYKPVDYNCLRTGPELSLDLRLKNLYQEINRIIAKYQPQ 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             AVE++F NK+    L +G AR +A+L+ A A IPV+EY P  +K+AV G G  DK+Q+
Sbjct: 63  YMAVEELFFNKNVRTALAVGHARGVALLAGANAGIPVAEYTPLQVKQAVTGYGKADKQQV 122

Query: 127 HMMLKML--MPESFFKGKDAADALAIAVCHAYHANS 160
             M+K L  +PE   K  D ADALA+A+CHA+ ++S
Sbjct: 123 QFMVKTLLSLPE-VPKPDDVADALAVAICHAHWSSS 157


>gi|315645784|ref|ZP_07898905.1| crossover junction endodeoxyribonuclease RuvC [Paenibacillus vortex
           V453]
 gi|315278545|gb|EFU41859.1| crossover junction endodeoxyribonuclease RuvC [Paenibacillus vortex
           V453]
          Length = 167

 Score =  121 bits (304), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 60/159 (37%), Positives = 93/159 (58%), Gaps = 3/159 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPG+   G+G VD  G  +  V  G I +        RL  +YEG+  +I  + 
Sbjct: 1   MRILGIDPGIAIVGFGFVDKVGSKVTPVQYGCIQTEAHTPDEERLLHVYEGMQQLIDKYE 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           PE  A E++F N++    + + QAR + IL+     +P++EY P  +K+A++G G  +KK
Sbjct: 61  PEAVAFEKLFFNRNVTTAMSVSQARGVLILAAIQRGLPIAEYTPMQVKQAIVGYGKAEKK 120

Query: 125 QIHMMLKMLMP-ESFFKGKDAADALAIAVCHA--YHANS 160
           Q+  M++M +  +S  K  D ADALA+A+CHA  Y  NS
Sbjct: 121 QVQEMVRMFLKLQSIPKPDDVADALAVAICHAHSYTLNS 159


>gi|289578209|ref|YP_003476836.1| crossover junction endodeoxyribonuclease RuvC [Thermoanaerobacter
           italicus Ab9]
 gi|289527922|gb|ADD02274.1| crossover junction endodeoxyribonuclease RuvC [Thermoanaerobacter
           italicus Ab9]
          Length = 165

 Score =  121 bits (304), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 57/156 (36%), Positives = 95/156 (60%), Gaps = 1/156 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPG+   G+GI+D   +    +  G + +      A RL  +Y G+T +IK++ 
Sbjct: 1   MRVLGIDPGIATMGYGIIDYKFNKFTVIDYGAVTTKAGIDKALRLHDIYNGITSLIKSYC 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  A+E++F NK+A   + +G++R + IL+   + I V EY P  +K+AV+G G  DK 
Sbjct: 61  PDVVAIEELFYNKNAKTVITIGESRGVCILAAVNSGIKVFEYTPLQVKQAVVGYGKADKH 120

Query: 125 QIHMMLKMLMP-ESFFKGKDAADALAIAVCHAYHAN 159
           Q+  M+K+L+  +   K  D ADALA+A+CH +  N
Sbjct: 121 QVQQMVKVLLNLDQIPKPDDVADALAVAICHCHSNN 156


>gi|319639478|ref|ZP_07994227.1| crossover junction endodeoxyribonuclease ruvC [Neisseria mucosa
           C102]
 gi|317399244|gb|EFV79916.1| crossover junction endodeoxyribonuclease ruvC [Neisseria mucosa
           C102]
          Length = 181

 Score =  121 bits (303), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 62/153 (40%), Positives = 96/153 (62%)

Query: 3   KSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
           +  RI+GIDPG R TG+G++D  G    +V+SG I +    SL+ R+  +   + ++I++
Sbjct: 5   QPTRILGIDPGSRVTGFGVIDAHGREHHYVASGCIKTPTGASLSERIAVIVRHIDEIIRH 64

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
           ++P +AA+EQVFVN +  ATL LGQAR  AI +  +  +PV EY    +K+AV+G G   
Sbjct: 65  YQPHQAAIEQVFVNVNPAATLMLGQARGAAIAALVMHGLPVFEYTALQVKQAVVGKGKAA 124

Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAIAVCHA 155
           K+Q+  M+  ++  S     DAAD LA+A+ HA
Sbjct: 125 KEQVQHMVVQMLALSGTPQADAADGLAVALTHA 157


>gi|146306302|ref|YP_001186767.1| Holliday junction resolvase [Pseudomonas mendocina ymp]
 gi|166233286|sp|A4XRR9|RUVC_PSEMY RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|145574503|gb|ABP84035.1| Holliday junction endonuclease RuvC [Pseudomonas mendocina ymp]
          Length = 174

 Score =  121 bits (303), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 66/157 (42%), Positives = 97/157 (61%), Gaps = 7/157 (4%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQS---LAFRLCQLYEGLTDVIKNW 63
           I+GIDPG R TG+G+V   G    +V+SG    C+R     LA RL  ++ G+++VI+  
Sbjct: 4   ILGIDPGSRITGYGVVRDTGRGCEYVASG----CIRTGDGPLAERLQIVFRGVSEVIRTH 59

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P    +EQVF+ ++A + LKLGQAR  AI++   A + +SEY    +K+AV+G G  DK
Sbjct: 60  GPVTMGIEQVFMARNADSALKLGQARGAAIVAAVEAGLEISEYTATQVKQAVVGTGAADK 119

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           +Q+ MM+  L+        DA+DAL IA+CHA+H  S
Sbjct: 120 QQVQMMVMHLLKLVQKPQIDASDALGIALCHAHHRQS 156


>gi|97274509|sp|Q5P3C5|RUVC_AZOSE RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
          Length = 185

 Score =  121 bits (303), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 65/156 (41%), Positives = 96/156 (61%), Gaps = 7/156 (4%)

Query: 4   SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQ---SLAFRLCQLYEGLTDVI 60
           + RI+G+DPGLR TG+G++D  G+ L +V+SG    C+R     L  RL  L +G+ +V+
Sbjct: 9   ATRILGLDPGLRITGFGVIDKLGNQLRYVASG----CIRTRDGELPGRLKTLLDGVREVV 64

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             + P++ AVE+VFVN +  +TL LGQAR   I       +PV EY    +K+AV+G G 
Sbjct: 65  AAYTPDQVAVEKVFVNVNPQSTLLLGQARGAVICGAVSCDLPVHEYTALQVKQAVVGYGK 124

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
             K+Q+  M++ L+        DAADALA A+CHA+
Sbjct: 125 AAKEQVQHMVQRLLALDGCPSPDAADALACAICHAH 160


>gi|300914175|ref|ZP_07131491.1| crossover junction endodeoxyribonuclease RuvC [Thermoanaerobacter
           sp. X561]
 gi|307724589|ref|YP_003904340.1| crossover junction endodeoxyribonuclease RuvC [Thermoanaerobacter
           sp. X513]
 gi|320115838|ref|YP_004185997.1| crossover junction endodeoxyribonuclease RuvC [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
 gi|300889110|gb|EFK84256.1| crossover junction endodeoxyribonuclease RuvC [Thermoanaerobacter
           sp. X561]
 gi|307581650|gb|ADN55049.1| crossover junction endodeoxyribonuclease RuvC [Thermoanaerobacter
           sp. X513]
 gi|319928929|gb|ADV79614.1| crossover junction endodeoxyribonuclease RuvC [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
          Length = 165

 Score =  121 bits (303), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 56/156 (35%), Positives = 94/156 (60%), Gaps = 1/156 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPG+   G+GI+D   +    +  G + +      A RL  +Y G+  +IK++ 
Sbjct: 1   MRVLGIDPGIAIMGYGIIDYKSNKFTVIDYGAVTTKAGIDKALRLHDIYNGIISLIKSYS 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  A+E++F NK+A   + +G++R ++IL+   + I V EY P  +K+AV+G G  DK 
Sbjct: 61  PDVVAIEELFYNKNAKTVITIGESRGVSILAAVNSGIKVFEYTPLQVKQAVVGYGRADKH 120

Query: 125 QIHMMLKMLMP-ESFFKGKDAADALAIAVCHAYHAN 159
           Q+  M+K L+  E   +  D ADALA+A+CH +  N
Sbjct: 121 QVQQMVKALLDLEEIPRPDDVADALAVAICHCHSNN 156


>gi|125972704|ref|YP_001036614.1| crossover junction endodeoxyribonuclease RuvC [Clostridium
           thermocellum ATCC 27405]
 gi|256004863|ref|ZP_05429837.1| crossover junction endodeoxyribonuclease RuvC [Clostridium
           thermocellum DSM 2360]
 gi|281416892|ref|ZP_06247912.1| crossover junction endodeoxyribonuclease RuvC [Clostridium
           thermocellum JW20]
 gi|166233189|sp|A3DBU2|RUVC_CLOTH RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|125712929|gb|ABN51421.1| crossover junction endodeoxyribonuclease RuvC [Clostridium
           thermocellum ATCC 27405]
 gi|255991173|gb|EEU01281.1| crossover junction endodeoxyribonuclease RuvC [Clostridium
           thermocellum DSM 2360]
 gi|281408294|gb|EFB38552.1| crossover junction endodeoxyribonuclease RuvC [Clostridium
           thermocellum JW20]
 gi|316941060|gb|ADU75094.1| crossover junction endodeoxyribonuclease RuvC [Clostridium
           thermocellum DSM 1313]
          Length = 162

 Score =  121 bits (303), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 61/151 (40%), Positives = 90/151 (59%), Gaps = 1/151 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG    G+GIV   G+    V  G I +     L  RL  LY GL ++I+ +RPE
Sbjct: 3   IMGIDPGFAIAGYGIVKYEGNKFTSVDYGAITTESSMELPKRLLVLYNGLKEIIEKYRPE 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             AVE++F NK+    L +G  R +A+L+ A + I V EY P  +K++++G G  +K Q+
Sbjct: 63  AIAVEELFFNKNIKTALAVGHGRGVAVLAAAQSGIDVFEYTPIQVKQSIVGYGRAEKTQV 122

Query: 127 HMMLKMLMP-ESFFKGKDAADALAIAVCHAY 156
             M+K ++   +  K  D ADALA+AVCHA+
Sbjct: 123 QQMVKAILNLPAIPKPDDVADALAVAVCHAH 153


>gi|83859807|ref|ZP_00953327.1| RuvC Holliday junction nuclease [Oceanicaulis alexandrii HTCC2633]
 gi|83852166|gb|EAP90020.1| RuvC Holliday junction nuclease [Oceanicaulis alexandrii HTCC2633]
          Length = 165

 Score =  121 bits (303), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 80/160 (50%), Positives = 107/160 (66%), Gaps = 1/160 (0%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M  +IRI+GIDPGL  TGWG++D  G  L  VS G I +  +  +A RL  +Y  + +++
Sbjct: 1   MSSAIRILGIDPGLNATGWGVIDQTGSRLSLVSYGVIKAPSKAPMAERLTVIYNAIEELV 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
              +P EAAVE  FV+  AV+ LKLGQARA A+L+PA A + V EYAP  +KKAV+G G 
Sbjct: 61  IAHQPHEAAVEDQFVHASAVSALKLGQARAAAMLAPARAGLVVGEYAPKLVKKAVVGTGS 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
            +K Q+  M+ +L+P S     DAADALA+AVCHA+H NS
Sbjct: 121 AEKAQVAAMIAILLPGSKAD-ADAADALAVAVCHAHHRNS 159


>gi|167037425|ref|YP_001665003.1| Holliday junction resolvase [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|167040092|ref|YP_001663077.1| Holliday junction resolvase [Thermoanaerobacter sp. X514]
 gi|256752591|ref|ZP_05493445.1| crossover junction endodeoxyribonuclease RuvC [Thermoanaerobacter
           ethanolicus CCSD1]
 gi|166854332|gb|ABY92741.1| crossover junction endodeoxyribonuclease RuvC [Thermoanaerobacter
           sp. X514]
 gi|166856259|gb|ABY94667.1| crossover junction endodeoxyribonuclease RuvC [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|256748529|gb|EEU61579.1| crossover junction endodeoxyribonuclease RuvC [Thermoanaerobacter
           ethanolicus CCSD1]
          Length = 182

 Score =  121 bits (303), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 56/156 (35%), Positives = 94/156 (60%), Gaps = 1/156 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPG+   G+GI+D   +    +  G + +      A RL  +Y G+  +IK++ 
Sbjct: 18  MRVLGIDPGIAIMGYGIIDYKSNKFTVIDYGAVTTKAGIDKALRLHDIYNGIISLIKSYS 77

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  A+E++F NK+A   + +G++R ++IL+   + I V EY P  +K+AV+G G  DK 
Sbjct: 78  PDVVAIEELFYNKNAKTVITIGESRGVSILAAVNSGIKVFEYTPLQVKQAVVGYGRADKH 137

Query: 125 QIHMMLKMLMP-ESFFKGKDAADALAIAVCHAYHAN 159
           Q+  M+K L+  E   +  D ADALA+A+CH +  N
Sbjct: 138 QVQQMVKALLDLEEIPRPDDVADALAVAICHCHSNN 173


>gi|323706512|ref|ZP_08118071.1| crossover junction endodeoxyribonuclease RuvC
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534142|gb|EGB23934.1| crossover junction endodeoxyribonuclease RuvC
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 165

 Score =  121 bits (303), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 60/152 (39%), Positives = 95/152 (62%), Gaps = 1/152 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RIIGIDPG+   G+GI+D  G     +  G I + V    + RL  +Y+G+  +I+ +R
Sbjct: 1   MRIIGIDPGIAIVGYGIIDDNGGKFKVLDYGAITTPVGAEKSLRLKDVYDGINSLIEKYR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  A+E++F NK+A   + +G+AR +AIL+     I V EY P  +K++V+G G  +KK
Sbjct: 61  PDVMAIEELFFNKNAKTVITIGEARGVAILAAVNCGIQVFEYTPLQVKQSVVGYGRAEKK 120

Query: 125 QIHMMLK-MLMPESFFKGKDAADALAIAVCHA 155
           Q+  M+K +L  +   K  D ADALA+A+CH+
Sbjct: 121 QVQNMVKAILRLDEIPKPDDVADALAVALCHS 152


>gi|56477501|ref|YP_159090.1| Holliday junction resolvase [Aromatoleum aromaticum EbN1]
 gi|56313544|emb|CAI08189.1| Crossover junction endodeoxyribonuclease RuvC [Aromatoleum
           aromaticum EbN1]
          Length = 203

 Score =  121 bits (303), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 65/156 (41%), Positives = 96/156 (61%), Gaps = 7/156 (4%)

Query: 4   SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQ---SLAFRLCQLYEGLTDVI 60
           + RI+G+DPGLR TG+G++D  G+ L +V+SG    C+R     L  RL  L +G+ +V+
Sbjct: 27  ATRILGLDPGLRITGFGVIDKLGNQLRYVASG----CIRTRDGELPGRLKTLLDGVREVV 82

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             + P++ AVE+VFVN +  +TL LGQAR   I       +PV EY    +K+AV+G G 
Sbjct: 83  AAYTPDQVAVEKVFVNVNPQSTLLLGQARGAVICGAVSCDLPVHEYTALQVKQAVVGYGK 142

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
             K+Q+  M++ L+        DAADALA A+CHA+
Sbjct: 143 AAKEQVQHMVQRLLALDGCPSPDAADALACAICHAH 178


>gi|213018929|ref|ZP_03334737.1| crossover junction endodeoxyribonuclease RuvC [Wolbachia
           endosymbiont of Culex quinquefasciatus JHB]
 gi|212995880|gb|EEB56520.1| crossover junction endodeoxyribonuclease RuvC [Wolbachia
           endosymbiont of Culex quinquefasciatus JHB]
          Length = 155

 Score =  120 bits (302), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 65/155 (41%), Positives = 95/155 (61%), Gaps = 1/155 (0%)

Query: 14  LRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQ 72
           + +TGW I+ +   +N+ F+  GTI +  +  +  RL  ++E L  VI  + P EAAVE+
Sbjct: 1   MSKTGWAIIRLEEKNNIKFLGGGTISTDGKLGVGERLHIIFEQLKKVIFLYSPNEAAVEK 60

Query: 73  VFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKM 132
           +F+NK+  ++L LG ARAIAIL   +  +P++EY  N IKK++ G GH DK QI  M+K 
Sbjct: 61  IFINKNPKSSLTLGYARAIAILILRMTDLPMNEYDANYIKKSITGNGHADKGQIIFMVKQ 120

Query: 133 LMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
           ++  S  K    ADALA A+CHAY  N  +  I S
Sbjct: 121 IVKSSNIKCHHTADALATAICHAYTKNFCFMGIGS 155


>gi|261405407|ref|YP_003241648.1| Holliday junction resolvase [Paenibacillus sp. Y412MC10]
 gi|329926785|ref|ZP_08281193.1| crossover junction endodeoxyribonuclease RuvC [Paenibacillus sp.
           HGF5]
 gi|261281870|gb|ACX63841.1| crossover junction endodeoxyribonuclease RuvC [Paenibacillus sp.
           Y412MC10]
 gi|328938985|gb|EGG35353.1| crossover junction endodeoxyribonuclease RuvC [Paenibacillus sp.
           HGF5]
          Length = 167

 Score =  120 bits (302), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 57/153 (37%), Positives = 91/153 (59%), Gaps = 1/153 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPG+   G+G VD  G  +  V  G I +        RL  +YEG+  +I  + 
Sbjct: 1   MRILGIDPGIAIVGFGFVDKVGSKVTPVQYGCIQTEAHTPDEERLHHVYEGMLQLIDKYE 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           PE  A E++F N++    + + QAR + IL+     +P++EY P  +K+A++G G  +KK
Sbjct: 61  PEAVAFEKLFFNRNVTTAMSVSQARGVLILAAVQRGLPIAEYTPMQVKQAIVGYGKAEKK 120

Query: 125 QIHMMLKMLMP-ESFFKGKDAADALAIAVCHAY 156
           Q+  M++M +  +S  K  D ADALA+A+CHA+
Sbjct: 121 QVQEMVRMFLKLQSIPKPDDVADALAVAICHAH 153


>gi|119944487|ref|YP_942167.1| crossover junction endodeoxyribonuclease RuvC [Psychromonas
           ingrahamii 37]
 gi|166233289|sp|A1SSV3|RUVC_PSYIN RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|119863091|gb|ABM02568.1| crossover junction endodeoxyribonuclease RuvC [Psychromonas
           ingrahamii 37]
          Length = 173

 Score =  120 bits (302), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 63/157 (40%), Positives = 98/157 (62%), Gaps = 7/157 (4%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVR---QSLAFRLCQLYEGLTDVIKNW 63
           I+GIDPG R TG+G+V   G    +++SG    C+R    +LA +L  ++ G++++IK +
Sbjct: 4   ILGIDPGSRITGYGVVQQKGSKCIYIASG----CIRTKGDTLAPKLDMIFNGISEIIKQY 59

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +P E  +EQVF+ K+  + LKLGQAR  AI++   A + V EY+   IK+AV G G   K
Sbjct: 60  QPTEFGIEQVFMAKNPDSALKLGQARGAAIVAATQADLYVCEYSARQIKQAVSGSGGATK 119

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           +Q+  M+  ++  S     DAAD LA+A+CHA+ A +
Sbjct: 120 EQVQQMVMQILNLSGRPQADAADGLAVAICHAHTAQT 156


>gi|330502218|ref|YP_004379087.1| Holliday junction resolvase [Pseudomonas mendocina NK-01]
 gi|328916504|gb|AEB57335.1| Holliday junction resolvase [Pseudomonas mendocina NK-01]
          Length = 174

 Score =  120 bits (302), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 67/157 (42%), Positives = 97/157 (61%), Gaps = 7/157 (4%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQS---LAFRLCQLYEGLTDVIKNW 63
           I+GIDPG R TG+G+V   G    +V+SG    C+R     LA RL  ++ G+++VI+  
Sbjct: 4   ILGIDPGSRITGYGVVRDTGRGCEYVASG----CIRTGNGPLAERLQIVFRGVSEVIRTH 59

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P    +EQVF+ ++A + LKLGQAR  AI++   A + VSEY    +K+AV+G G  DK
Sbjct: 60  GPVTMGIEQVFMARNADSALKLGQARGAAIVAAVEAGLEVSEYTATQVKQAVVGSGAADK 119

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           +Q+ MM+  L+        DA+DAL IA+CHA+H  S
Sbjct: 120 QQVQMMVMHLLKLVQKPQIDASDALGIALCHAHHRQS 156


>gi|254449901|ref|ZP_05063338.1| crossover junction endodeoxyribonuclease RuvC [Octadecabacter
           antarcticus 238]
 gi|198264307|gb|EDY88577.1| crossover junction endodeoxyribonuclease RuvC [Octadecabacter
           antarcticus 238]
          Length = 173

 Score =  120 bits (302), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 75/145 (51%), Positives = 95/145 (65%), Gaps = 1/145 (0%)

Query: 21  IVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAV 80
           ++ V G  L  V++G   S  +  LA RL  L++ L  VI  + P+ AAVEQ FVN +  
Sbjct: 1   MILVNGSRLTHVANGVCKSG-KGDLAQRLLALHDQLVAVIAEFAPDAAAVEQTFVNSNGA 59

Query: 81  ATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESFFK 140
           ATLKLGQAR IA+L PA A + V EYAPN IKKAV+GVGH DK QI  M+K+ +P     
Sbjct: 60  ATLKLGQARGIAMLVPARAGLAVGEYAPNAIKKAVVGVGHADKAQIAHMIKLQLPGVELA 119

Query: 141 GKDAADALAIAVCHAYHANSGYYKI 165
           G DAADALAIA+CHA+H  S   ++
Sbjct: 120 GPDAADALAIAICHAHHLQSASARV 144


>gi|121606298|ref|YP_983627.1| Holliday junction resolvase [Polaromonas naphthalenivorans CJ2]
 gi|166233279|sp|A1VSS8|RUVC_POLNA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|120595267|gb|ABM38706.1| crossover junction endodeoxyribonuclease RuvC [Polaromonas
           naphthalenivorans CJ2]
          Length = 182

 Score =  120 bits (302), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 66/154 (42%), Positives = 99/154 (64%), Gaps = 2/154 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCV--RQSLAFRLCQLYEGLTDVIKN 62
           + I+GIDPGL+ TG+G+VD+ G +L +V+SGTI +     + L  RL  L++G+ +V++ 
Sbjct: 1   MHILGIDPGLQITGFGVVDMDGPHLRYVASGTIKTTHLDTKDLPGRLKVLFDGVREVVQR 60

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
           ++PE A+VE VFVN +  ATL LGQAR   I +   + + V+EY    +KKAV G G   
Sbjct: 61  YQPEVASVEIVFVNVNPQATLLLGQARGACITALVSSDLAVAEYTALQMKKAVAGYGKAG 120

Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
           K ++  M+  L+      GKDAADAL +A+ HA+
Sbjct: 121 KAEVQQMVMRLLKLPSLPGKDAADALGLAITHAH 154


>gi|319941757|ref|ZP_08016079.1| crossover junction endodeoxyribonuclease RuvC [Sutterella
           wadsworthensis 3_1_45B]
 gi|319804690|gb|EFW01557.1| crossover junction endodeoxyribonuclease RuvC [Sutterella
           wadsworthensis 3_1_45B]
          Length = 201

 Score =  120 bits (301), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 67/155 (43%), Positives = 91/155 (58%), Gaps = 1/155 (0%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M  ++RI+G+DPGL  TGWGI+D  G    +V+SG +    +   A RL  +   +  VI
Sbjct: 1   MAAAVRILGLDPGLNHTGWGIIDTTGAKSIWVASG-VFDIPKGETAARLAHIAREIEAVI 59

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
           K   P  AA E+VFVN +  +TL LG AR  AI + +LA + V E+ P+ IK+AV G G 
Sbjct: 60  KTHLPTVAACERVFVNVNPQSTLLLGHARGAAICAASLAGLAVEEFTPSEIKQAVTGSGS 119

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHA 155
            DKK I  M++ L+P       D ADALA A+C A
Sbjct: 120 ADKKMIQAMVERLLPIPHHPRTDEADALACALCLA 154


>gi|15639508|ref|NP_218958.1| Holliday junction nuclease (ruvC) [Treponema pallidum subsp.
           pallidum str. Nichols]
 gi|189025747|ref|YP_001933519.1| Holliday junction nuclease, subunit C [Treponema pallidum subsp.
           pallidum SS14]
 gi|6094207|sp|O83530|RUVC_TREPA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|238689326|sp|B2S3B1|RUVC_TREPS RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|3322809|gb|AAC65505.1| Holliday junction nuclease (ruvC) [Treponema pallidum subsp.
           pallidum str. Nichols]
 gi|189018322|gb|ACD70940.1| Holliday junction nuclease, subunit C [Treponema pallidum subsp.
           pallidum SS14]
 gi|291059894|gb|ADD72629.1| crossover junction endodeoxyribonuclease RuvC [Treponema pallidum
           subsp. pallidum str. Chicago]
          Length = 196

 Score =  120 bits (300), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 62/162 (38%), Positives = 98/162 (60%), Gaps = 1/162 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPGL  TG+G+++  G +L  ++ G IV+   Q  A RL  +++ L  VI  ++P+
Sbjct: 19  IVGIDPGLESTGYGVIEAGGGSLRCLTYGVIVTQSNQPSAARLRHIFDTLQQVISIYQPQ 78

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             AVE ++  K+  + L + QAR + +L+ A   I V+EYAPN IKKA+ G+   +K+Q+
Sbjct: 79  YCAVETIYFAKNVTSALCVAQARGVVLLAMAQQHISVAEYAPNAIKKAITGIAQAEKRQV 138

Query: 127 HMMLKMLMPESFFKGKD-AADALAIAVCHAYHANSGYYKIAS 167
             ++K+L+        D AADALA+AV H +   S  Y + S
Sbjct: 139 QHLVKILLNLKDIPHPDHAADALAVAVTHVHCCMSSNYAVGS 180


>gi|251798378|ref|YP_003013109.1| Holliday junction resolvase [Paenibacillus sp. JDR-2]
 gi|247546004|gb|ACT03023.1| crossover junction endodeoxyribonuclease RuvC [Paenibacillus sp.
           JDR-2]
          Length = 166

 Score =  120 bits (300), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 58/153 (37%), Positives = 92/153 (60%), Gaps = 1/153 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPG+   G+G +D  G  L  V  G I +        RL Q+Y+    ++  ++
Sbjct: 1   MRVLGIDPGIAIAGFGFIDKDGHKLKPVQYGCIQTAAHTPQEERLVQIYDSAVALMDKYK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  AVE++F N++      +GQAR + IL+ A   +PV+EY P  +K+AV+G G  +K+
Sbjct: 61  PDTVAVEKLFFNRNVTTAFAVGQARGVIILAAAQRGLPVAEYTPLQVKQAVVGYGKAEKR 120

Query: 125 QIHMMLKMLMPESFF-KGKDAADALAIAVCHAY 156
           Q+  M+KM +  S   K  D ADALA+A+CHA+
Sbjct: 121 QVQEMVKMFLKLSAIPKPDDVADALAVAICHAH 153


>gi|73666641|ref|YP_302657.1| Holliday junction endonuclease RuvC [Ehrlichia canis str. Jake]
 gi|108884828|sp|Q3YT96|RUVC_EHRCJ RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|72393782|gb|AAZ68059.1| Holliday junction endonuclease RuvC [Ehrlichia canis str. Jake]
          Length = 156

 Score =  119 bits (299), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 52/156 (33%), Positives = 100/156 (64%), Gaps = 1/156 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + +IG+DPGL  TGWGI+ +  D +  + +G I +  +++   RL ++++ L +++ +++
Sbjct: 1   MNVIGLDPGLNHTGWGILSIEKD-IKLIGNGVIKTNNKETPGQRLNKIHKELINILNSYQ 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
              A++E+VF+NK+  +++ L  AR + +L+     I V EY+ N +KK++ G GH  K+
Sbjct: 60  INSASMEEVFINKNPRSSISLCYARGVLLLTLNAMNIQVFEYSSNYVKKSITGNGHAKKE 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           Q+H M++ ++   F    D +DA+A+A+CHAY  N+
Sbjct: 120 QVHFMVEKILNVEFKGTYDISDAIAVALCHAYSKNN 155


>gi|86146481|ref|ZP_01064804.1| Holliday junction resolvase [Vibrio sp. MED222]
 gi|218709099|ref|YP_002416720.1| Holliday junction resolvase [Vibrio splendidus LGP32]
 gi|254767488|sp|B7VMI1|RUVC_VIBSL RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|85835744|gb|EAQ53879.1| Holliday junction resolvase [Vibrio sp. MED222]
 gi|218322118|emb|CAV18231.1| Crossover junction endodeoxyribonuclease ruvC [Vibrio splendidus
           LGP32]
          Length = 173

 Score =  119 bits (299), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 65/152 (42%), Positives = 96/152 (63%), Gaps = 7/152 (4%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQS---LAFRLCQLYEGLTDVIKNW 63
           I+GIDPG R TG+G++   G +L ++ SG    C+R S   L  RL Q+Y G++++I  +
Sbjct: 4   ILGIDPGSRITGYGVIRQNGRHLYYLGSG----CIRTSEKELPGRLKQIYAGVSEIITQF 59

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +P+  A+EQVF++K+A + LKLGQAR  AI++   A +PV EYA   IK+AV G G  DK
Sbjct: 60  QPDVFAIEQVFMSKNADSALKLGQARGSAIVAAVNADLPVHEYAARLIKQAVTGNGGADK 119

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHA 155
             +  M+  ++        DAADAL +A+ HA
Sbjct: 120 SMVQNMVMSMLKLPAKPQADAADALGVAITHA 151


>gi|294341438|emb|CAZ89855.1| Crossover junction endodeoxyribonuclease ruvC (Holliday junction
           nuclease ruvC) (Holliday juction resolvase ruvC)
           [Thiomonas sp. 3As]
          Length = 195

 Score =  119 bits (299), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 67/157 (42%), Positives = 94/157 (59%), Gaps = 2/157 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGL  TG+G++D  G  L + +SG I    + +L  RL  L++G+++V +   
Sbjct: 1   MRILGIDPGLNTTGYGVIDAQGQRLGYQASGAI-RIPKGTLPERLKTLFDGVSEVARQAG 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
            E A VE VFVN +  +TL LGQAR  AI +     +PV EY    +KK+++G G   K 
Sbjct: 60  AEVAVVEIVFVNVNPQSTLLLGQARGAAIAALVAQGLPVVEYTALQLKKSIVGYGRASKS 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSG 161
           QI  M+  L+      G DAADAL +A+CHA HA  G
Sbjct: 120 QIQEMVMRLLALPGQPGPDAADALGLAICHA-HAQRG 155


>gi|226942103|ref|YP_002797177.1| Holliday junction resolvase [Laribacter hongkongensis HLHK9]
 gi|226717030|gb|ACO76168.1| RuvC [Laribacter hongkongensis HLHK9]
          Length = 179

 Score =  119 bits (298), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 69/155 (44%), Positives = 103/155 (66%)

Query: 6   RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           R++GIDPG R TG+G++D+ G    +V+SG I +     L  R+  L EGL++V+  ++P
Sbjct: 7   RLLGIDPGSRITGFGVIDLVGSQRVYVASGCIRTRAGAPLTERIKTLLEGLSEVVAAYQP 66

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
            EAAVEQVFVN +  ATL LGQAR   + +  LA +P+SEY    +K++V+G G  DK+Q
Sbjct: 67  GEAAVEQVFVNVNPSATLMLGQARGAVLSALVLAGLPISEYTALQVKQSVVGHGKADKEQ 126

Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           +  M+  L+  +     DAADALA+A+CHA H+++
Sbjct: 127 VQHMVVRLLGLTGTPQADAADALAVALCHANHSHA 161


>gi|157375169|ref|YP_001473769.1| crossover junction endodeoxyribonuclease [Shewanella sediminis
           HAW-EB3]
 gi|189046082|sp|A8FUW8|RUVC_SHESH RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|157317543|gb|ABV36641.1| Crossover junction endodeoxyribonuclease [Shewanella sediminis
           HAW-EB3]
          Length = 173

 Score =  119 bits (298), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 61/157 (38%), Positives = 103/157 (65%), Gaps = 7/157 (4%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQS---LAFRLCQLYEGLTDVIKNW 63
           I+G+DPG R TG+G++   G +  ++ SG    C+R +   L +RL Q+++G++++I+ +
Sbjct: 4   ILGVDPGSRITGYGVIQCIGRHQTYLGSG----CIRTASDDLPYRLKQIFDGVSEIIRQY 59

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +P+E A+E+VF+ K+A + LKLGQAR  AI++   A +PV+EY+   IK AV+G G   K
Sbjct: 60  QPDEFAIERVFMAKNADSALKLGQARGAAIVAATNADLPVAEYSATQIKSAVVGTGKAQK 119

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
            Q+  M++ ++        DAADAL +A+CH + + S
Sbjct: 120 SQVQHMVQQILKLPAAPQADAADALGVAICHFHTSQS 156


>gi|257453384|ref|ZP_05618679.1| crossover junction endodeoxyribonuclease RuvC [Enhydrobacter
           aerosaccus SK60]
 gi|257449136|gb|EEV24084.1| crossover junction endodeoxyribonuclease RuvC [Enhydrobacter
           aerosaccus SK60]
          Length = 200

 Score =  119 bits (298), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 63/160 (39%), Positives = 100/160 (62%), Gaps = 6/160 (3%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVR-QSLAFRLCQLYEGLTDVIKNWR- 64
            IGIDPG R TG+GI+ ++GD L  + +GTI +  + +++  RL ++++G++ ++++++ 
Sbjct: 4   FIGIDPGSRLTGYGIIRLSGDKLEHLDAGTIHAYSQGETMPERLKRIFDGISRIVEHYQK 63

Query: 65  ----PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
               P  AA+EQVF+  +    LKLGQAR  AI +     + V+EY    IK+AV G G 
Sbjct: 64  YTNEPMTAAIEQVFMASNPDTALKLGQARGAAIAAMVAKDLQVAEYTARQIKQAVCGYGA 123

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
            DK+QI +M+  L+        DAAD LA A+CHAYH+ +
Sbjct: 124 ADKEQIQLMVMRLLSLEIQPQADAADGLACAICHAYHSQT 163


>gi|94501013|ref|ZP_01307537.1| Holliday junction resolvase [Oceanobacter sp. RED65]
 gi|94426760|gb|EAT11744.1| Holliday junction resolvase [Oceanobacter sp. RED65]
          Length = 176

 Score =  119 bits (298), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 67/153 (43%), Positives = 104/153 (67%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G+++  G  L ++ SG I     + LA+RL Q+++ ++++I+  +P 
Sbjct: 4   ILGIDPGSRLTGFGVIEAQGSRLRYIGSGCIRIDTSEDLAYRLKQIHDCVSELIETHQPN 63

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+EQVF+ K+A + LKLGQAR  AI++ A+  +PV EYA   +K+AV+G G  DK+Q+
Sbjct: 64  EFAIEQVFMGKNADSALKLGQARGSAIVAAAVNNLPVHEYAARAVKQAVVGKGSADKEQV 123

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHAN 159
             M+++L+        DAADALAIA+ HAY+  
Sbjct: 124 QHMVQLLLKLPGKPQADAADALAIAITHAYNTQ 156


>gi|332701179|ref|ZP_08421267.1| Crossover junction endodeoxyribonuclease ruvC [Desulfovibrio
           africanus str. Walvis Bay]
 gi|332551328|gb|EGJ48372.1| Crossover junction endodeoxyribonuclease ruvC [Desulfovibrio
           africanus str. Walvis Bay]
          Length = 178

 Score =  119 bits (298), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 64/154 (41%), Positives = 97/154 (62%), Gaps = 3/154 (1%)

Query: 4   SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           SI ++G+DPG RRTGWG+V  A   L  V++G + +  +  L  RL +++  L  +I   
Sbjct: 8   SITVLGLDPGSRRTGWGVVHEASGKLSLVAAGVVATDAKTDLCVRLGRIFTELAKLIHEH 67

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RP EAAVE VFV+++ ++ LKLGQAR  AI + A   +PVS Y P+ +KK+++G G  +K
Sbjct: 68  RPAEAAVENVFVSQNIMSALKLGQARGAAIAACAHLGLPVSSYEPSLVKKSLVGGGRAEK 127

Query: 124 KQIHMMLKMLMP---ESFFKGKDAADALAIAVCH 154
            Q+  M+  ++    +    G DA DALA+A+CH
Sbjct: 128 GQVAFMVGRMLNVRLDDLKLGLDATDALAVAICH 161


>gi|332530370|ref|ZP_08406315.1| Holliday junction resolvase [Hylemonella gracilis ATCC 19624]
 gi|332040181|gb|EGI76562.1| Holliday junction resolvase [Hylemonella gracilis ATCC 19624]
          Length = 179

 Score =  119 bits (298), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 61/151 (40%), Positives = 97/151 (64%), Gaps = 2/151 (1%)

Query: 8   IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQ--SLAFRLCQLYEGLTDVIKNWRP 65
           +GIDPGLR TG+G+++  G +L +V+SGTI +   +  +L  RL  L++G+T+V+  ++P
Sbjct: 1   MGIDPGLRTTGFGVIEAQGQHLRYVASGTISTAKEEQGNLPARLKVLFDGITEVVTRYQP 60

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
            +AAVE VFVN +  +TL LGQAR   + +    ++PV+EY    +K+AV G G   K +
Sbjct: 61  TQAAVEIVFVNVNPQSTLLLGQARGACLTALVNCKLPVAEYTALQMKQAVAGHGRAAKAE 120

Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
           +  M++ L+      G DAADAL +A+  A+
Sbjct: 121 VQAMVQRLLKLPGLPGPDAADALGLAITQAH 151


>gi|91202551|emb|CAJ72190.1| strongly similar to crossover junction endodioxyribonuclease RuvC
           [Candidatus Kuenenia stuttgartiensis]
          Length = 155

 Score =  119 bits (297), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 60/154 (38%), Positives = 100/154 (64%), Gaps = 3/154 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++I+GIDPG    G+G+++ +G  +  V+ G+I +   Q+   RL  +Y G+T++I  ++
Sbjct: 1   MKILGIDPGTLIAGYGVIEKSGAEIKAVAYGSIKTGKNQNFPERLKTIYTGVTELITIYK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  AVE+VF  K+  A +K+G+ R I  L  A+A IP++EYA   +KKAV G G+  K 
Sbjct: 61  PDHMAVEEVFFGKNFKAAIKIGEGRGIIFLCAAMANIPIAEYAARVVKKAVAGNGNAHKG 120

Query: 125 QIHMMLKML--MPESFFKGKDAADALAIAVCHAY 156
           ++  M+K +  +PE   + +DA+DALAIA+CH +
Sbjct: 121 KVQEMVKAILGLPE-IPQPEDASDALAIAICHGH 153


>gi|84388517|ref|ZP_00991064.1| Holliday junction resolvase [Vibrio splendidus 12B01]
 gi|84377066|gb|EAP93937.1| Holliday junction resolvase [Vibrio splendidus 12B01]
          Length = 173

 Score =  118 bits (296), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 65/152 (42%), Positives = 95/152 (62%), Gaps = 7/152 (4%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQS---LAFRLCQLYEGLTDVIKNW 63
           I+GIDPG R TG+G++   G +L ++ SG    C+R S   L  RL Q+Y G++++I  +
Sbjct: 4   ILGIDPGSRITGYGVIRQNGRHLYYLGSG----CIRTSEKELPGRLKQIYAGVSEIITQF 59

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +P+  A+EQVF+ K+A + LKLGQAR  AI++   A +PV EYA   IK+AV G G  DK
Sbjct: 60  QPDVFAIEQVFMAKNADSALKLGQARGSAIVAAVNADLPVHEYAARLIKQAVTGNGGADK 119

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHA 155
             +  M+  ++        DAADAL +A+ HA
Sbjct: 120 SMVQNMVMSMLKLPAKPQADAADALGVAITHA 151


>gi|90417109|ref|ZP_01225037.1| crossover junction endodeoxyribonuclease RuvC [marine gamma
           proteobacterium HTCC2207]
 gi|90331125|gb|EAS46381.1| crossover junction endodeoxyribonuclease RuvC [marine gamma
           proteobacterium HTCC2207]
          Length = 171

 Score =  118 bits (296), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 70/150 (46%), Positives = 99/150 (66%), Gaps = 1/150 (0%)

Query: 6   RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           RIIGIDPG RRTG+GIVD     + +V+SG I+     SL  RL  ++ G+  +I+ + P
Sbjct: 3   RIIGIDPGSRRTGYGIVDAVAGKVSYVTSG-IIRLPEGSLPERLKIIFNGVGQLIEQYAP 61

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
           EE  +E+VF++ +A + LKLGQAR  AI++   A + V EY+  +IK AV+G G  DK Q
Sbjct: 62  EEMGIEEVFLSHNASSALKLGQARGAAIVAGVNAGLSVGEYSARSIKLAVVGTGGADKSQ 121

Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHA 155
           + MM+  L+  S    +DAADALA+A+CHA
Sbjct: 122 VQMMIMQLLKLSSAPAEDAADALAVALCHA 151


>gi|332977849|gb|EGK14602.1| crossover junction endoribonuclease subunit C [Desmospora sp. 8437]
          Length = 167

 Score =  118 bits (296), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 61/158 (38%), Positives = 99/158 (62%), Gaps = 4/158 (2%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RIIGIDPG+   G+G++D  G+ L  V  G+I +    S A RL Q+Y+ +T++ + +R
Sbjct: 1   MRIIGIDPGIAIVGYGVIDRQGNRLKAVDYGSIQTEAGLSTATRLKQIYDEVTELYQKFR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  A+E++F N++      +GQAR + +L+   A   ++EY P  +K AV+G G   K+
Sbjct: 61  PDVVAIEKLFFNRNVTTAFTVGQARGVLMLAAEEAGAVITEYTPLQVKMAVVGYGQAQKR 120

Query: 125 QIHMMLKML--MPESFFKGKDAADALAIAVCHAYHANS 160
           QI  M+++L  +PE   K  D ADAL +A+C A H+N+
Sbjct: 121 QIQEMVRILLNLPE-IPKPDDVADALGVAICEA-HSNT 156


>gi|148977431|ref|ZP_01814031.1| Holliday junction resolvase [Vibrionales bacterium SWAT-3]
 gi|145963383|gb|EDK28648.1| Holliday junction resolvase [Vibrionales bacterium SWAT-3]
          Length = 173

 Score =  118 bits (296), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 65/152 (42%), Positives = 95/152 (62%), Gaps = 7/152 (4%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQS---LAFRLCQLYEGLTDVIKNW 63
           I+GIDPG R TG+G++   G +L ++ SG    C+R S   L  RL Q+Y G++++I  +
Sbjct: 4   ILGIDPGSRITGYGVIRQNGRHLYYLGSG----CIRTSEKELPGRLKQIYAGVSEIITQF 59

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +P+  A+EQVF+ K+A + LKLGQAR  AI++   A +PV EYA   IK+AV G G  DK
Sbjct: 60  QPDVFAIEQVFMAKNADSALKLGQARGSAIVAAVNADLPVHEYAARLIKQAVTGNGGADK 119

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHA 155
             +  M+  ++        DAADAL +A+ HA
Sbjct: 120 SMVQNMVMSMLKLPAKPQADAADALGVAITHA 151


>gi|119896862|ref|YP_932075.1| Holliday junction resolvase [Azoarcus sp. BH72]
 gi|166231579|sp|A1K2Y3|RUVC_AZOSB RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|119669275|emb|CAL93188.1| crossover junction endodeoxyribonuclease [Azoarcus sp. BH72]
          Length = 183

 Score =  118 bits (295), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 63/153 (41%), Positives = 94/153 (61%), Gaps = 7/153 (4%)

Query: 4   SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQ---SLAFRLCQLYEGLTDVI 60
           + RI+G+DPGLR TG+G++D  G  L +V+SG    C++     L  RL  L +G+ +VI
Sbjct: 9   ATRILGLDPGLRITGFGVIDTLGSQLRYVASG----CIKTRDGELPGRLKTLLDGVREVI 64

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             ++P+  AVE+VFVN +  +TL LGQAR   I       +PV+EY    +K++V+G G 
Sbjct: 65  ATYQPDAVAVEKVFVNVNPQSTLLLGQARGAVICGAVSCDLPVAEYTALQVKQSVVGYGK 124

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVC 153
             K+Q+  M++ L+      G DAADALA A+C
Sbjct: 125 AAKEQVQHMVQRLLALDASPGPDAADALACAIC 157


>gi|239813937|ref|YP_002942847.1| Holliday junction resolvase [Variovorax paradoxus S110]
 gi|259495697|sp|C5CNG5|RUVC_VARPS RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|239800514|gb|ACS17581.1| crossover junction endodeoxyribonuclease RuvC [Variovorax paradoxus
           S110]
          Length = 182

 Score =  118 bits (295), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 65/153 (42%), Positives = 94/153 (61%), Gaps = 2/153 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVS--CVRQSLAFRLCQLYEGLTDVIKN 62
           +RI+GIDPGL  TG+G+VD  G  L +V+SGTI +      +L  RL  L++G+ ++   
Sbjct: 1   MRILGIDPGLLTTGFGVVDSDGHALSYVASGTISTRHLGSGNLPARLKVLFDGIAEIAAR 60

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
           ++P+ +AVE +FVN +  +TL LGQAR   + S   + + V+EY    +KKAV G G   
Sbjct: 61  YQPDASAVEIIFVNVNPQSTLLLGQARGACVTSLVNSNLSVAEYTALQMKKAVAGHGQAA 120

Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAIAVCHA 155
           K Q+  M+K L+      G DAADAL IA+ HA
Sbjct: 121 KAQVQEMVKRLLDLPGLPGADAADALGIAITHA 153


>gi|319791676|ref|YP_004153316.1| crossover junction endodeoxyribonuclease ruvc [Variovorax paradoxus
           EPS]
 gi|315594139|gb|ADU35205.1| crossover junction endodeoxyribonuclease RuvC [Variovorax paradoxus
           EPS]
          Length = 182

 Score =  118 bits (295), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 65/153 (42%), Positives = 94/153 (61%), Gaps = 2/153 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVS--CVRQSLAFRLCQLYEGLTDVIKN 62
           +RI+GIDPGL  TG+G+VD  G  L +V+SGTI +      +L  RL  L++G+ ++   
Sbjct: 1   MRILGIDPGLLTTGFGVVDADGHALRYVASGTISTRHLGSGNLPARLKVLFDGIAEITAR 60

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
           ++P+ +AVE +FVN +  +TL LGQAR   + S   + + V+EY    +KKAV G G   
Sbjct: 61  YQPDASAVEIIFVNVNPQSTLLLGQARGACVTSLVNSNLTVAEYTALQMKKAVAGHGQAA 120

Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAIAVCHA 155
           K Q+  M+K L+      G DAADAL IA+ HA
Sbjct: 121 KAQVQEMVKRLLDLPGLPGADAADALGIAITHA 153


>gi|310643560|ref|YP_003948318.1| crossover junction endodeoxyribonuclease ruvc [Paenibacillus
           polymyxa SC2]
 gi|309248510|gb|ADO58077.1| Crossover junction endodeoxyribonuclease ruvC [Paenibacillus
           polymyxa SC2]
          Length = 167

 Score =  117 bits (294), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 53/153 (34%), Positives = 91/153 (59%), Gaps = 1/153 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R +GIDPG+   G+G VD  G  +  V  G I +        RL  +YEG+  +I  ++
Sbjct: 1   MRFLGIDPGIAIVGFGFVDKIGSKVVPVQYGCIQTEAHTPEEDRLLHVYEGMLQLIDKYK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  A+E++F N++    + + QAR + +L+     +P+ EY P  +K+A++G G  +KK
Sbjct: 61  PDAVALEKLFFNRNVTTAMSVSQARGVLVLAAKQRNLPIGEYTPMQVKQAIVGYGKAEKK 120

Query: 125 QIHMMLKMLMP-ESFFKGKDAADALAIAVCHAY 156
           Q+  M++M +  ++  K  D ADALA+A+CHA+
Sbjct: 121 QVQEMIRMFLKLQAVPKPDDVADALAVAICHAH 153


>gi|296137140|ref|YP_003644382.1| crossover junction endodeoxyribonuclease RuvC [Thiomonas intermedia
           K12]
 gi|295797262|gb|ADG32052.1| crossover junction endodeoxyribonuclease RuvC [Thiomonas intermedia
           K12]
          Length = 195

 Score =  117 bits (294), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 67/157 (42%), Positives = 94/157 (59%), Gaps = 2/157 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGL  TG+G++D  G  L + +SG I    + +L  RL  L++G+++V +   
Sbjct: 1   MRILGIDPGLNTTGYGVIDAHGQRLGYQASGAI-RIPKGTLPERLKTLFDGVSEVARLAD 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
            E A VE VFVN +  +TL LGQAR  AI +     +PV EY    +KK+++G G   K 
Sbjct: 60  AEVAVVEIVFVNVNPQSTLLLGQARGAAIAALVAQGLPVVEYTALQLKKSIVGYGRASKS 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSG 161
           QI  M+  L+      G DAADAL +A+CHA HA  G
Sbjct: 120 QIQEMVMRLLALPGQPGPDAADALGLAICHA-HAQRG 155


>gi|289661898|ref|ZP_06483479.1| Holliday junction resolvase [Xanthomonas campestris pv. vasculorum
           NCPPB702]
 gi|289669611|ref|ZP_06490686.1| Holliday junction resolvase [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 174

 Score =  117 bits (294), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 65/155 (41%), Positives = 96/155 (61%), Gaps = 7/155 (4%)

Query: 6   RIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           RI+GIDPG +RTG GI+D+  G     V    ++       + RL +L +GL ++I+ +R
Sbjct: 3   RILGIDPGSQRTGIGIIDIDEGGRSRHVHHAPLLLLGEGDFSQRLKRLLQGLGELIETYR 62

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P E A+E+VF+ K A + LKLG AR  AI +  +  +PV EYA N +K A++G G  DK 
Sbjct: 63  PNEVAIEKVFMGKSAASALKLGHARGAAICAVVMRDLPVHEYAANEVKLALVGKGGADKV 122

Query: 125 QIHMMLKMLMPESFFKGK---DAADALAIAVCHAY 156
           Q+  M+ +++     KGK   DAADALA+A+ HA+
Sbjct: 123 QVQHMVGIMLN---LKGKLQPDAADALAVAITHAH 154


>gi|167629897|ref|YP_001680396.1| crossover junction endodeoxyribonuclease ruvc [Heliobacterium
           modesticaldum Ice1]
 gi|238687887|sp|B0TF68|RUVC_HELMI RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|167592637|gb|ABZ84385.1| crossover junction endodeoxyribonuclease ruvc [Heliobacterium
           modesticaldum Ice1]
          Length = 162

 Score =  117 bits (293), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 58/156 (37%), Positives = 95/156 (60%), Gaps = 1/156 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG    G+G+++V G+ L  ++ G + +    S A RL  ++  L  +I  +RP 
Sbjct: 3   ILGIDPGTAICGYGLIEVQGNRLSALAYGAVRTPAHTSQASRLQTIFTDLEAIIATYRPT 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             AVE++F N++    L +GQAR + +L+ A A + V EY P+ +K+AV+G G  +K+Q+
Sbjct: 63  HVAVEELFFNRNVTTALTVGQARGVILLAAARAGLSVHEYKPSQVKQAVVGYGRAEKQQV 122

Query: 127 HMMLKMLMP-ESFFKGKDAADALAIAVCHAYHANSG 161
             M+++L+  E   K  D ADALA+A+C A+    G
Sbjct: 123 QQMVRVLLALEEIPKPDDVADALAVAICCAHSLTWG 158


>gi|159901265|ref|YP_001547512.1| Holliday junction resolvase [Herpetosiphon aurantiacus ATCC 23779]
 gi|159894304|gb|ABX07384.1| crossover junction endodeoxyribonuclease RuvC [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 165

 Score =  117 bits (293), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 65/155 (41%), Positives = 100/155 (64%), Gaps = 1/155 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RIIGIDPG    GWGI+D  G +L  V+ G   +  +Q L  RL  +Y  L  V++++R
Sbjct: 1   MRIIGIDPGTAIMGWGIIDADGSDLTMVAYGAFTTPAKQPLPDRLVSIYNDLAHVLEHYR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P  AAVE++F  K+    + +  AR +A+L+   A++P+ EY P ++K+AV+G G+ DK+
Sbjct: 61  PSVAAVEELFFAKNVTTAMAVSHARGVALLALRQAKLPIFEYKPLSVKQAVVGYGNADKQ 120

Query: 125 QIHMMLKM-LMPESFFKGKDAADALAIAVCHAYHA 158
           Q+  +++M L  +   K  DAADALA+A+CHAY A
Sbjct: 121 QMQHLVQMTLNLDHIPKPDDAADALAVAMCHAYAA 155


>gi|58581283|ref|YP_200299.1| Holliday junction resolvase [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84623201|ref|YP_450573.1| Holliday junction resolvase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|75435936|sp|Q5H2A7|RUVC_XANOR RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|123739146|sp|Q2P578|RUVC_XANOM RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|58425877|gb|AAW74914.1| holliday junction resolvase; endodeoxyribonuclease [Xanthomonas
           oryzae pv. oryzae KACC10331]
 gi|84367141|dbj|BAE68299.1| holliday junction resolvase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 174

 Score =  117 bits (293), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 65/155 (41%), Positives = 96/155 (61%), Gaps = 7/155 (4%)

Query: 6   RIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           RI+GIDPG +RTG GI+D+  G     V    ++       + RL +L  GL ++I+ +R
Sbjct: 3   RILGIDPGSQRTGIGIIDIDEGGRSRHVHHAPLILLGEGDFSQRLKRLLHGLGELIETYR 62

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+E A+E+VF+ K A + LKLGQAR  AI +  +  +PV EYA   +K A++G G  DK 
Sbjct: 63  PDEVAIEKVFMGKSAASALKLGQARGAAICAVVMRDLPVHEYAATEVKLALVGKGGADKL 122

Query: 125 QIHMMLKMLMPESFFKGK---DAADALAIAVCHAY 156
           Q+  M+ +++     KGK   DAADALA+A+ HA+
Sbjct: 123 QVQHMVGIMLN---LKGKLQPDAADALAVAITHAH 154


>gi|166712991|ref|ZP_02244198.1| Holliday junction resolvase [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 174

 Score =  117 bits (293), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 65/155 (41%), Positives = 96/155 (61%), Gaps = 7/155 (4%)

Query: 6   RIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           RI+GIDPG +RTG GI+D+  G     V    ++       + RL +L  GL ++I+ +R
Sbjct: 3   RILGIDPGSQRTGIGIIDIDEGGRSRHVHHAPLILLGEGDFSQRLKRLLHGLGELIETYR 62

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+E A+E+VF+ K A + LKLGQAR  AI +  +  +PV EYA   +K A++G G  DK 
Sbjct: 63  PDEVAIEKVFMGKSAASALKLGQARGAAICAVVMRDLPVHEYAATEVKLALVGKGGADKV 122

Query: 125 QIHMMLKMLMPESFFKGK---DAADALAIAVCHAY 156
           Q+  M+ +++     KGK   DAADALA+A+ HA+
Sbjct: 123 QVQHMVGIMLN---LKGKLQPDAADALAVAITHAH 154


>gi|262276114|ref|ZP_06053923.1| crossover junction endodeoxyribonuclease RuvC [Grimontia hollisae
           CIP 101886]
 gi|262219922|gb|EEY71238.1| crossover junction endodeoxyribonuclease RuvC [Grimontia hollisae
           CIP 101886]
          Length = 173

 Score =  117 bits (292), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 75/157 (47%), Positives = 108/157 (68%), Gaps = 10/157 (6%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVR---QSLAFRLCQLYEGLTDVIKNW 63
           I+GIDPG R TG+G++   G +L ++ SG    C+R   + LA RL Q+Y G+++VI  +
Sbjct: 4   ILGIDPGSRITGYGVIRHQGSHLEYLGSG----CIRTDSEDLAGRLGQIYAGVSEVITQF 59

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +P+  A+EQVF+ ++A + LKLGQAR  AI++   A +PVSEYA   IK++V+G G  DK
Sbjct: 60  QPDTFAIEQVFMARNADSALKLGQARGSAIVAAVNAGLPVSEYAARLIKQSVVGKGSADK 119

Query: 124 KQI-HMMLKMLMPESFFKGKDAADALAIAVCHAYHAN 159
           KQ+ HM++ ML   S  +  DAADALA+A+CHA H N
Sbjct: 120 KQVQHMVVHMLKLPSTPQ-ADAADALAVAICHA-HTN 154


>gi|330811394|ref|YP_004355856.1| Crossover junction endodeoxyribonuclease [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327379502|gb|AEA70852.1| Crossover junction endodeoxyribonuclease [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 174

 Score =  117 bits (292), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 63/157 (40%), Positives = 98/157 (62%), Gaps = 7/157 (4%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQ---SLAFRLCQLYEGLTDVIKNW 63
           I+GIDPG R TG+G+V   G    +V+SG    C+R     L  RL  +Y G+ +VI+ +
Sbjct: 4   ILGIDPGSRITGYGVVRDTGRGCVYVASG----CIRTGAGELHERLQIVYRGVREVIQTY 59

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P    +E+VF+ ++A + LKLGQAR  AI++ A   + ++EY+   +K+AV+G G  +K
Sbjct: 60  GPVTMGIEKVFMARNADSALKLGQARGAAIVAGAEENLEIAEYSATQVKQAVVGTGAANK 119

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           +Q+ MM+  L+        DA+DALAIA+CHA+  +S
Sbjct: 120 EQVQMMVMHLLKLVSKPQIDASDALAIAICHAHTRSS 156


>gi|220904014|ref|YP_002479326.1| Holliday junction resolvase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219868313|gb|ACL48648.1| crossover junction endodeoxyribonuclease RuvC [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 173

 Score =  117 bits (292), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 58/152 (38%), Positives = 96/152 (63%), Gaps = 2/152 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTI-VSCVRQSLAFRLCQLYEGLTDVIKNW 63
           + ++GIDPG +RTGWG+V      L  V  G +  +   ++ + RL  +Y  L+ V+   
Sbjct: 10  VTVMGIDPGSQRTGWGVVREVSGVLQLVDCGVVRTASAGKAFSDRLACIYHELSTVLSRL 69

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +PEEAA+EQVF  ++A + LKLGQAR +A+ + A   + +S+Y P  +KK+++G G  +K
Sbjct: 70  KPEEAAIEQVFTAQNAASALKLGQARGVAVAACAAHGLSISDYEPTLVKKSLVGTGRAEK 129

Query: 124 KQIHMMLKMLMP-ESFFKGKDAADALAIAVCH 154
           +Q+  M++ L+  ++     D +DALA+AVCH
Sbjct: 130 EQVAFMVQRLLNVKNASWSLDTSDALAVAVCH 161


>gi|253574943|ref|ZP_04852283.1| crossover junction endodeoxyribonuclease RuvC [Paenibacillus sp.
           oral taxon 786 str. D14]
 gi|251845989|gb|EES73997.1| crossover junction endodeoxyribonuclease RuvC [Paenibacillus sp.
           oral taxon 786 str. D14]
          Length = 167

 Score =  116 bits (291), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 51/153 (33%), Positives = 92/153 (60%), Gaps = 1/153 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPG+   G+G +D  G+ +  V  G I +        RL  +YE +  +I  ++
Sbjct: 1   MRILGIDPGIAIVGFGFIDKQGNRVTPVQYGCIQTEAHTPEEERLMHVYEAMVQLIDKYK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  A E++F N++    + + QAR + +L+ A   +P++EY P  +K+A++G G  +K+
Sbjct: 61  PDAVAFEKLFFNRNVTTAMSVSQARGVLVLAAAQKGLPIAEYTPMQVKQAIVGYGKAEKR 120

Query: 125 QIHMMLKMLMP-ESFFKGKDAADALAIAVCHAY 156
           Q+  M +M +  ++  K  D ADAL++A+CHA+
Sbjct: 121 QVQEMTRMFLKLQAIPKPDDVADALSVAICHAH 153


>gi|308070381|ref|YP_003871986.1| Crossover junction endodeoxyribonuclease ruvC [Paenibacillus
           polymyxa E681]
 gi|305859660|gb|ADM71448.1| Crossover junction endodeoxyribonuclease ruvC [Paenibacillus
           polymyxa E681]
          Length = 167

 Score =  116 bits (291), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 53/153 (34%), Positives = 90/153 (58%), Gaps = 1/153 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R +GIDPG+   G+G VD  G  +  V  G I +        RL  +YEG+  +I  ++
Sbjct: 1   MRFLGIDPGIAIVGFGFVDKIGSKVVPVQYGCIQTEAHTPEEERLLHVYEGMLQLIDKYK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  A+E++F N++    + + QAR + +L+     +P+ EY P  +K+A++G G  +KK
Sbjct: 61  PDAVALEKLFFNRNVTTAMSVSQARGVLVLAAKQRNLPIGEYTPMQVKQAIVGYGKAEKK 120

Query: 125 QIHMMLKMLMP-ESFFKGKDAADALAIAVCHAY 156
           Q+  M++M +  +   K  D ADALA+A+CHA+
Sbjct: 121 QVQEMVRMFLKLQVVPKPDDVADALAVAICHAH 153


>gi|221134421|ref|ZP_03560726.1| crossover junction endodeoxyribonuclease RuvC [Glaciecola sp.
           HTCC2999]
          Length = 172

 Score =  116 bits (291), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 67/157 (42%), Positives = 103/157 (65%), Gaps = 7/157 (4%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVR---QSLAFRLCQLYEGLTDVIKNW 63
           I+GIDPG R TG+G+++  G+ L +++SG    C+R     LA RL Q+++G++++I  +
Sbjct: 3   ILGIDPGSRITGYGVIEQKGNKLTYIASG----CIRLTGDELAGRLQQVFQGVSEIISQY 58

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +P+E A+EQVF+ K+  + LKLGQAR  AI++     +PVSEYA   IK++V+G G  DK
Sbjct: 59  QPKEFAIEQVFMAKNPDSALKLGQARGAAIVAATQFDLPVSEYAARQIKQSVVGKGSADK 118

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
            Q+  M+  L+        DAADALA+A+CH +   S
Sbjct: 119 TQVQHMVSYLLKLPGTPQADAADALAVALCHGHTRQS 155


>gi|77460630|ref|YP_350137.1| Holliday junction resolvase [Pseudomonas fluorescens Pf0-1]
 gi|91771934|sp|Q3K7V8|RUVC_PSEPF RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|77384633|gb|ABA76146.1| crossover junction endodeoxyribonuclease [Pseudomonas fluorescens
           Pf0-1]
          Length = 175

 Score =  116 bits (291), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 64/158 (40%), Positives = 99/158 (62%), Gaps = 8/158 (5%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLC-FVSSGTIVSCVRQ---SLAFRLCQLYEGLTDVIKN 62
           I+GIDPG R TG+GIV   G   C +V+SG    C+R     L  RL  +Y G+ ++I+ 
Sbjct: 4   ILGIDPGSRITGYGIVRDTGRGGCIYVASG----CIRTGAGELHERLQIVYRGVREIIQT 59

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
           + P    +E+VF+ K+A + LKLGQAR  AI++ A   + ++EY    +K+AV+G G  +
Sbjct: 60  YGPVTMGIEKVFMAKNADSALKLGQARGAAIVAGAEESLEIAEYTATQVKQAVVGTGAAN 119

Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           K+Q+ MM+  ++  +     DA+DALAIA+CHA+  +S
Sbjct: 120 KEQVQMMVMHMLKLTSKPQIDASDALAIAICHAHTRSS 157


>gi|171057222|ref|YP_001789571.1| Holliday junction resolvase [Leptothrix cholodnii SP-6]
 gi|170774667|gb|ACB32806.1| crossover junction endodeoxyribonuclease RuvC [Leptothrix cholodnii
           SP-6]
          Length = 183

 Score =  116 bits (291), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 63/159 (39%), Positives = 100/159 (62%), Gaps = 6/159 (3%)

Query: 6   RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQS----LAFRLCQLYEGLTDVIK 61
           RI+GIDPGL  TG+G++DV G  L +V+SGT+ +  R++    L  R+  ++EG+ +V+ 
Sbjct: 3   RILGIDPGLATTGFGVIDVEGQALRYVASGTVHT--READIGDLPGRIKLIFEGVREVMA 60

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
            ++P  A++E VFVN +  +TL LGQAR  A+ +     + V+EY    +KKAV+G GH 
Sbjct: 61  TYQPTCASIEIVFVNVNPQSTLLLGQARGAALAALVTGGLAVTEYTALQMKKAVVGSGHA 120

Query: 122 DKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
            K+Q+  M+  L+       +DA+DAL +A+ HA+   S
Sbjct: 121 RKEQVQEMVMRLLQLPGRPNQDASDALGLAITHAHAGGS 159


>gi|256545111|ref|ZP_05472477.1| crossover junction endodeoxyribonuclease RuvC [Anaerococcus
           vaginalis ATCC 51170]
 gi|256399152|gb|EEU12763.1| crossover junction endodeoxyribonuclease RuvC [Anaerococcus
           vaginalis ATCC 51170]
          Length = 164

 Score =  116 bits (291), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 53/151 (35%), Positives = 92/151 (60%), Gaps = 1/151 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG+   G+G+++V G+    + +G + +  +     RL  LY+ L D+IK ++P+
Sbjct: 3   ILGIDPGIAIMGYGVLEVNGNRYKVLENGVVTTSSKTKTPERLKILYDNLNDIIKQYKPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E++F N++    + +G AR + +L   +  +P+ EY P  IK+A+ G G  +KKQ+
Sbjct: 63  EFAIEELFFNQNVKTAITVGHARGVQVLCAQVNNLPIYEYTPLQIKQAITGFGRANKKQM 122

Query: 127 HMMLKMLMPESFF-KGKDAADALAIAVCHAY 156
              +  L+  S   K  DAADALA+++ HA+
Sbjct: 123 QETVTTLLNLSEIPKPDDAADALAVSLTHAF 153


>gi|229592302|ref|YP_002874421.1| Holliday junction resolvase [Pseudomonas fluorescens SBW25]
 gi|259495691|sp|C3JYS9|RUVC_PSEFS RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|229364168|emb|CAY51823.1| crossover junction endodeoxyribonuclease [Pseudomonas fluorescens
           SBW25]
          Length = 174

 Score =  116 bits (291), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 63/157 (40%), Positives = 98/157 (62%), Gaps = 7/157 (4%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQ---SLAFRLCQLYEGLTDVIKNW 63
           I+GIDPG R TG+G+V        +V+SG    C+R     LA RL  +Y G+ +VI+ +
Sbjct: 4   ILGIDPGSRITGFGVVQQTPRGCVYVASG----CIRTGAGELAERLQIVYRGVREVIQTY 59

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P    +E+VF+ K+A + LKLGQAR  AI++ A   + ++EY    +K+AV+G G  +K
Sbjct: 60  GPVTMGIEKVFMAKNADSALKLGQARGAAIVAGAEEGMEIAEYTATQVKQAVVGTGAANK 119

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           +Q+ MM+  ++  +     DA+DALAIA+CHA+  +S
Sbjct: 120 EQVQMMVMHMLKLTSKPQIDASDALAIAICHAHTRSS 156


>gi|321472928|gb|EFX83897.1| hypothetical protein DAPPUDRAFT_239450 [Daphnia pulex]
          Length = 165

 Score =  116 bits (290), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 65/154 (42%), Positives = 98/154 (63%)

Query: 3   KSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
           K + ++G+DPGLR TGWG V +    + +  SG I +  +     RL  L++ LT +I+ 
Sbjct: 2   KPMIVLGLDPGLRTTGWGSVFLKDKEVIYQPSGLIKTPEKCPTPERLAYLFQALTTIIRE 61

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
           + PEE +VE+VFVNK+  ++LKL  AR + + +PA+  +PV  YAPN +KKA+ G GH D
Sbjct: 62  YCPEEVSVEEVFVNKNPKSSLKLALARGVVLCAPAVIGLPVFSYAPNYMKKALSGYGHAD 121

Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
           K QI   ++ ++       KDAADAL +A+CH+Y
Sbjct: 122 KNQIGWAVQQILKLKTPPQKDAADALGLAICHSY 155


>gi|58616730|ref|YP_195929.1| crossover junction endodeoxyribonuclease RuvC [Ehrlichia
           ruminantium str. Gardel]
 gi|75432634|sp|Q5FF10|RUVC_EHRRG RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|58416342|emb|CAI27455.1| Crossover junction endodeoxyribonuclease RuvC [Ehrlichia
           ruminantium str. Gardel]
          Length = 160

 Score =  116 bits (290), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 52/155 (33%), Positives = 101/155 (65%), Gaps = 3/155 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDN---LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           + IIGIDP L  TGW I+ V  +N   +  V++G+I++  ++++  RL ++Y  L +++ 
Sbjct: 1   MNIIGIDPSLNSTGWAILSVNDNNYNEIRLVNNGSILTSNKKTIGERLNKIYSELLNILN 60

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
           +++ + A++E++F+NK+  ++  L  AR I +L+  +A IP+ EY+ N +KK++ G GH 
Sbjct: 61  SYKVDTASMEEIFINKNPKSSTLLCYARGILLLTLDVACIPLFEYSANRVKKSITGNGHA 120

Query: 122 DKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
            K+Q+  M++ ++    +   D +DA+A+A+CH Y
Sbjct: 121 KKEQVCFMIENILNIKCYGTYDISDAIAVAICHIY 155


>gi|332993890|gb|AEF03945.1| Holliday junction resolvase [Alteromonas sp. SN2]
          Length = 172

 Score =  116 bits (290), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 68/157 (43%), Positives = 100/157 (63%), Gaps = 7/157 (4%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVR---QSLAFRLCQLYEGLTDVIKNW 63
           I+GIDPG R TG+G+++     L +V+SG    C+R     L  RL  +Y G++D+I+ +
Sbjct: 3   ILGIDPGSRVTGYGVIERKQGKLVYVASG----CIRVGTADLPSRLANIYTGISDIIRQY 58

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P + A+EQVF+ K+  + LKLGQAR  AI++     +PV+EY+   IK+AV+G G  DK
Sbjct: 59  NPAQFAIEQVFMAKNPDSALKLGQARGAAIVAATQGELPVAEYSARQIKQAVVGKGSADK 118

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
            Q+  M+K L+  S     DAADALA+A+CHA+   S
Sbjct: 119 TQVQHMVKHLLSLSGTPQADAADALAVALCHAHTEQS 155


>gi|303325470|ref|ZP_07355913.1| crossover junction endodeoxyribonuclease RuvC [Desulfovibrio sp.
           3_1_syn3]
 gi|302863386|gb|EFL86317.1| crossover junction endodeoxyribonuclease RuvC [Desulfovibrio sp.
           3_1_syn3]
          Length = 167

 Score =  116 bits (290), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 60/155 (38%), Positives = 96/155 (61%), Gaps = 4/155 (2%)

Query: 3   KSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTI-VSCVRQSLAFRLCQLYEGLTDVIK 61
           + + +IGIDPG +RTGWG+V      L  V  G +  +   +  + RL ++Y  L  V+ 
Sbjct: 2   QPVTVIGIDPGSQRTGWGVVREVSGVLRLVDCGVVRTASAGKEFSARLARIYHELAKVLG 61

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
             +P+EAA+EQVF  K+A + LKLGQAR +A+ + A   + +S+Y P  +KK+++G G  
Sbjct: 62  RCKPDEAAIEQVFTAKNAASALKLGQARGVAVAACAAYGLGISDYEPTLVKKSLVGTGRA 121

Query: 122 DKKQIHMMLKMLMP--ESFFKGKDAADALAIAVCH 154
           +K+Q+  M+K L+   E+ +   D +DAL +AVCH
Sbjct: 122 EKEQVAFMVKRLLNVREADW-ALDTSDALGVAVCH 155


>gi|78048837|ref|YP_365012.1| Holliday junction resolvase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|90146488|sp|Q3BQF1|RUVC_XANC5 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|78037267|emb|CAJ25012.1| holliday junction resolvase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 174

 Score =  116 bits (290), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 64/155 (41%), Positives = 96/155 (61%), Gaps = 7/155 (4%)

Query: 6   RIIGIDPGLRRTGWGIVDVAGDNLC-FVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           RI+GIDPG +RTG GI+D+  D     V    ++       + RL +L +GL ++I+ +R
Sbjct: 3   RILGIDPGSQRTGIGIIDIDEDGRSRHVHHAPLMLLGEGDFSQRLKRLLQGLGELIETYR 62

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+E A+E+VF+ K A + LKLG AR  AI +  +  +PV EYA   +K A++G G  DK 
Sbjct: 63  PDEVAIERVFMGKSAASALKLGHARGAAICAVVMRDLPVHEYAATEVKLALVGKGGADKV 122

Query: 125 QIHMMLKMLMPESFFKGK---DAADALAIAVCHAY 156
           Q+  M+ +++     KGK   DAADALA+A+ HA+
Sbjct: 123 QVQHMVGIMLN---LKGKLQPDAADALAVAITHAH 154


>gi|66044656|ref|YP_234497.1| Holliday junction resolvase [Pseudomonas syringae pv. syringae
           B728a]
 gi|75502954|sp|Q4ZWL3|RUVC_PSEU2 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|63255363|gb|AAY36459.1| Crossover junction endodeoxyribonuclease RuvC [Pseudomonas syringae
           pv. syringae B728a]
          Length = 174

 Score =  116 bits (290), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 64/157 (40%), Positives = 97/157 (61%), Gaps = 7/157 (4%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQ---SLAFRLCQLYEGLTDVIKNW 63
           I+GIDPG R TG+G+V   G    +V+SG    C+R     L  RL  +Y G+ +VIK +
Sbjct: 4   ILGIDPGSRITGYGVVRDTGRGCVYVASG----CIRTGSGELHERLQIVYRGVREVIKTY 59

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P    +E+VF+ ++A + LKLGQAR  AI++ A   + ++EY    +K+AV G G  +K
Sbjct: 60  EPVTMGIEKVFMARNADSALKLGQARGAAIVAGAEEALEIAEYTATQVKQAVAGTGGANK 119

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           +Q+ MM+  L+  +     DA+DALAIA+CHA+  +S
Sbjct: 120 EQVMMMVMHLLKLTQKPQIDASDALAIALCHAHTRSS 156


>gi|284037130|ref|YP_003387060.1| crossover junction endodeoxyribonuclease RuvC [Spirosoma linguale
           DSM 74]
 gi|283816423|gb|ADB38261.1| crossover junction endodeoxyribonuclease RuvC [Spirosoma linguale
           DSM 74]
          Length = 182

 Score =  116 bits (290), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 62/159 (38%), Positives = 94/159 (59%), Gaps = 9/159 (5%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+G+DPG    G+GI+ V G  +  +  G +      +   +L +LYE +  +I  + P+
Sbjct: 2   ILGVDPGTMIAGYGIISVKGGTMSMIQYGVVQLSKYTTYQLKLQKLYETILRLIDEYHPD 61

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALAR-IPVSEYAPNTIKKAVIGVGHGDKKQ 125
           E A+E  F  K+  A LKLG+A+ + +++ AL+R IP+ EYAP  IK++V G G+  K Q
Sbjct: 62  EMAIEDPFFGKNVQAMLKLGRAQGV-VMAAALSRNIPIVEYAPRRIKQSVTGNGNASKDQ 120

Query: 126 IHMMLKMLMPES----FFKGKDAADALAIAVCHAYHANS 160
           +  M+  L+ E     FF   DA DALAIAVCH +H N+
Sbjct: 121 VSQMVGHLLKEDLDPKFF---DATDALAIAVCHHFHENA 156


>gi|258514396|ref|YP_003190618.1| Holliday junction resolvase [Desulfotomaculum acetoxidans DSM 771]
 gi|257778101|gb|ACV61995.1| crossover junction endodeoxyribonuclease RuvC [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 159

 Score =  116 bits (290), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 60/156 (38%), Positives = 93/156 (59%), Gaps = 3/156 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+G+DPG   TG+G+V   G+    V    I +  +   A RL  LY  L  ++  +RP+
Sbjct: 3   ILGVDPGTAITGYGLVSFHGNRFSTVEYNCIKTPAKMEPADRLLILYRELEKILLKYRPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             AVE++F N +A   L +GQAR + +L  A+A + V EY P  +K+AV+G G  +K+Q+
Sbjct: 63  RMAVEKLFFNTNARTALAVGQARGVVLLLGAMAGLRVYEYTPLEVKQAVVGYGRAEKEQV 122

Query: 127 HMMLK--MLMPESFFKGKDAADALAIAVCHAYHANS 160
             M+K  + +PE   +  D ADALA+A+CHA++ N 
Sbjct: 123 QYMVKAILCLPE-IPRPDDVADALAVAICHAHYGNG 157


>gi|296113753|ref|YP_003627691.1| crossover junction endodeoxyribonuclease RuvC [Moraxella
           catarrhalis RH4]
 gi|295921447|gb|ADG61798.1| crossover junction endodeoxyribonuclease RuvC [Moraxella
           catarrhalis RH4]
 gi|326562102|gb|EGE12430.1| Holliday junction resolvase [Moraxella catarrhalis 7169]
 gi|326564533|gb|EGE14759.1| Holliday junction resolvase [Moraxella catarrhalis 46P47B1]
 gi|326565717|gb|EGE15880.1| Holliday junction resolvase [Moraxella catarrhalis 12P80B1]
 gi|326566285|gb|EGE16437.1| Holliday junction resolvase [Moraxella catarrhalis 103P14B1]
 gi|326567063|gb|EGE17185.1| Holliday junction resolvase [Moraxella catarrhalis BC1]
 gi|326568327|gb|EGE18407.1| Holliday junction resolvase [Moraxella catarrhalis BC7]
 gi|326572228|gb|EGE22223.1| Holliday junction resolvase [Moraxella catarrhalis BC8]
 gi|326574570|gb|EGE24510.1| Holliday junction resolvase [Moraxella catarrhalis O35E]
 gi|326574826|gb|EGE24756.1| Holliday junction resolvase [Moraxella catarrhalis 101P30B1]
 gi|326576150|gb|EGE26065.1| Holliday junction resolvase [Moraxella catarrhalis CO72]
          Length = 196

 Score =  115 bits (289), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 62/159 (38%), Positives = 95/159 (59%), Gaps = 6/159 (3%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW--- 63
           IIGIDPG R TG+GI+    D L F+ +GTI +     +  R+ Q++ G++ ++ ++   
Sbjct: 4   IIGIDPGSRLTGYGIISTNNDQLTFLDAGTIRTN-SSDITERIAQIFAGVSRIVNHYQKY 62

Query: 64  --RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
             +P +AA+EQVF+  +  + LKLGQAR  AI +     + VSEY    IK+AV G G  
Sbjct: 63  SNKPIQAAIEQVFMANNPDSALKLGQARGAAIAALTAQDLQVSEYTARQIKQAVCGYGAA 122

Query: 122 DKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           DK+Q+  M+  ++        DAAD LA A+CHA+ ++S
Sbjct: 123 DKEQVTAMVCRILSLDIIPQADAADGLACAICHAHSSHS 161


>gi|312962760|ref|ZP_07777248.1| Crossover junction endodeoxyribonuclease [Pseudomonas fluorescens
           WH6]
 gi|311282977|gb|EFQ61570.1| Crossover junction endodeoxyribonuclease [Pseudomonas fluorescens
           WH6]
          Length = 182

 Score =  115 bits (289), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 63/157 (40%), Positives = 98/157 (62%), Gaps = 7/157 (4%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQS---LAFRLCQLYEGLTDVIKNW 63
           I+GIDPG R TG+G+V        +V+SG    C+R     LA RL  +Y G+ +VI+ +
Sbjct: 12  ILGIDPGSRITGFGVVQHTPRGCVYVASG----CIRTGAGELAERLQIVYRGVREVIQTY 67

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P    +E+VF+ K+A + LKLGQAR  AI++ A   + ++EY    +K+AV+G G  +K
Sbjct: 68  GPVTMGIEKVFMAKNADSALKLGQARGAAIVAGAEEGMEIAEYTATQVKQAVVGTGAANK 127

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           +Q+ MM+  ++  +     DA+DALAIA+CHA+  +S
Sbjct: 128 EQVQMMVMHMLKLTSKPQIDASDALAIAICHAHTRSS 164


>gi|332288347|ref|YP_004419199.1| Holliday junction resolvase [Gallibacterium anatis UMN179]
 gi|330431243|gb|AEC16302.1| Holliday junction resolvase [Gallibacterium anatis UMN179]
          Length = 187

 Score =  115 bits (289), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 55/128 (42%), Positives = 87/128 (67%), Gaps = 2/128 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I + V   L  RL ++Y G+T++I  ++P+
Sbjct: 4   ILGIDPGSRLTGYGVIKQQGKQLTYLGSGVIRTAV-DDLPSRLQRIYSGVTEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             ++EQVF+ K+A + LKLGQAR +AI++     +PV EYA   +K+ V+G+G  DKKQ+
Sbjct: 63  MLSIEQVFMAKNADSALKLGQARGVAIVAATNQNLPVFEYAARLVKQTVVGIGSADKKQV 122

Query: 127 -HMMLKML 133
            HM+ ++L
Sbjct: 123 QHMVTRIL 130


>gi|156345604|ref|XP_001621416.1| hypothetical protein NEMVEDRAFT_v1g222014 [Nematostella vectensis]
 gi|156207323|gb|EDO29316.1| predicted protein [Nematostella vectensis]
          Length = 162

 Score =  115 bits (289), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 62/157 (39%), Positives = 98/157 (62%), Gaps = 7/157 (4%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQ---SLAFRLCQLYEGLTDVIKNW 63
           I+GIDPG R TG+G+V   G N  +V+SG    C+R    S+  RL  ++ G+ +VI+ +
Sbjct: 4   ILGIDPGSRITGYGVVRDTGRNCEYVASG----CIRTGNGSMPERLQVVFRGVREVIETY 59

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P    +EQVF+ ++  + LKLGQAR +AI++   A + +++Y    +K+A+ G G  DK
Sbjct: 60  GPVTMGIEQVFMARNPDSALKLGQARGVAIVAGMEAGLDIAQYTATQVKQAIAGSGGADK 119

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           +Q+ +M+  L+        DA+DALAIA+CHA+H  S
Sbjct: 120 EQVQLMVMHLLKLVQKPQIDASDALAIALCHAHHRQS 156


>gi|116748438|ref|YP_845125.1| crossover junction endodeoxyribonuclease RuvC [Syntrophobacter
           fumaroxidans MPOB]
 gi|116697502|gb|ABK16690.1| Holliday junction endonuclease RuvC [Syntrophobacter fumaroxidans
           MPOB]
          Length = 183

 Score =  115 bits (289), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 68/156 (43%), Positives = 91/156 (58%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           IR IG+DPG R TG+GIV+  G  L  V++G I       L  RL  +YE LT VI    
Sbjct: 18  IRTIGVDPGSRFTGYGIVEGEGTRLLHVANGVIRLSGELPLTQRLKLIYEQLTRVIAEVG 77

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           PE  A+E +F  K+  + L+LGQAR  AIL+   A +P+ EY+   +KKAV+G G   K 
Sbjct: 78  PECMAIEDIFFAKNVKSALRLGQARGAAILAGVNAGLPIYEYSALEVKKAVVGYGKAGKD 137

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           Q+  M++ L   S     +AADALA+AVCH   + S
Sbjct: 138 QVGEMVRCLFRLSQPIDPNAADALAVAVCHVNTSGS 173


>gi|93005501|ref|YP_579938.1| crossover junction endodeoxyribonuclease RuvC [Psychrobacter
           cryohalolentis K5]
 gi|123264700|sp|Q1QCZ9|RUVC_PSYCK RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|92393179|gb|ABE74454.1| crossover junction endodeoxyribonuclease RuvC [Psychrobacter
           cryohalolentis K5]
          Length = 194

 Score =  115 bits (289), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 64/159 (40%), Positives = 96/159 (60%), Gaps = 6/159 (3%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW--- 63
           IIGIDPG R TG+GI+   GD L ++ SGTI +  ++ +  RL +++ GLT + ++    
Sbjct: 4   IIGIDPGSRMTGYGILQQTGDKLTYIDSGTIRTDTKE-MPERLKRIFNGLTRITQHHLKY 62

Query: 64  --RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
              P   A+EQVF+ ++  + LKLGQAR  AI +     + VSEY    IK+AV G G  
Sbjct: 63  ADEPIYTAIEQVFMAENPDSALKLGQARGAAIAAMVALDLEVSEYTARQIKQAVCGYGAA 122

Query: 122 DKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
            K+Q+  M+  ++   F   +DAAD LA A+CHA+ ++S
Sbjct: 123 AKEQVQEMVCRILTLDFVPQQDAADGLACAICHAHSSHS 161


>gi|325922869|ref|ZP_08184592.1| Holliday junction endonuclease RuvC [Xanthomonas gardneri ATCC
           19865]
 gi|325546646|gb|EGD17777.1| Holliday junction endonuclease RuvC [Xanthomonas gardneri ATCC
           19865]
          Length = 174

 Score =  115 bits (289), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 67/155 (43%), Positives = 94/155 (60%), Gaps = 7/155 (4%)

Query: 6   RIIGIDPGLRRTGWGIVDVAGDNLC-FVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           RI+GIDPG +RTG G++D+        V    +V       A RL +L  GL +VI+ +R
Sbjct: 3   RILGIDPGSQRTGVGVIDIDESGRSRHVYHAPLVLLGEGDFAQRLKRLLHGLGEVIETYR 62

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+E A+E+VF+ K A + LKLG AR  AI +  L  +PV EYA   IK A++G G  DK 
Sbjct: 63  PQEVAIEKVFMGKSADSALKLGHARGAAICAVVLRDLPVHEYAATEIKLALVGKGGADKV 122

Query: 125 QIHMMLKMLMPESFFKGK---DAADALAIAVCHAY 156
           Q+  M+ +++     KGK   DAADALA+A+ HA+
Sbjct: 123 QVQHMVGIMLN---LKGKLQPDAADALAVAITHAH 154


>gi|70732090|ref|YP_261846.1| Holliday junction resolvase [Pseudomonas fluorescens Pf-5]
 gi|110282923|sp|Q4K7D7|RUVC_PSEF5 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|68346389|gb|AAY93995.1| crossover junction endodeoxyribonuclease RuvC [Pseudomonas
           fluorescens Pf-5]
          Length = 174

 Score =  115 bits (289), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 63/157 (40%), Positives = 97/157 (61%), Gaps = 7/157 (4%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQS---LAFRLCQLYEGLTDVIKNW 63
           I+GIDPG R TG+G+V   G    +V+SG    C+R     L  RL  +Y G+ +VI+ +
Sbjct: 4   ILGIDPGSRITGYGVVRDTGRGCVYVASG----CIRTGAGELPDRLQIVYRGVREVIQTY 59

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P    +E+VF+ ++A + LKLGQAR  AI++ A   + ++EY    +K+AV G G  +K
Sbjct: 60  GPVTMGIEKVFMARNADSALKLGQARGAAIVAGAEEGLEIAEYTATQVKQAVAGTGGANK 119

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           +Q+ MM+  L+  +     DA+DALAIA+CHA+  +S
Sbjct: 120 EQVQMMVMHLLKLTTKPQIDASDALAIAICHAHTRSS 156


>gi|150390101|ref|YP_001320150.1| crossover junction endodeoxyribonuclease RuvC [Alkaliphilus
           metalliredigens QYMF]
 gi|167012674|sp|A6TQM3|RUVC_ALKMQ RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|149949963|gb|ABR48491.1| crossover junction endodeoxyribonuclease RuvC [Alkaliphilus
           metalliredigens QYMF]
          Length = 164

 Score =  115 bits (288), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 57/159 (35%), Positives = 96/159 (60%), Gaps = 4/159 (2%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG+   G+GIV   G+    +  G I +  + +   RL ++Y  L ++I  ++P+
Sbjct: 3   ILGIDPGIAILGYGIVKYEGNKFKVIDYGAIKTSSKMATPQRLKEIYLRLDELISEYQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+E++F N +    + +  AR +A+L+ A+    + EY P  +K+AV+G G  +KKQ+
Sbjct: 63  AVAIEELFFNTNTTTAMVVSHARGVAVLAAAIHEKEIYEYTPLQVKQAVVGYGRAEKKQV 122

Query: 127 HMMLKMLMP-ESFFKGKDAADALAIAVCHAYHANSGYYK 164
             M+K+L+  E   K  D ADALA+AVCHA+   SG+++
Sbjct: 123 QQMIKILLNLEQAPKPDDVADALAVAVCHAH---SGHFQ 158


>gi|309388949|gb|ADO76829.1| crossover junction endodeoxyribonuclease RuvC [Halanaerobium
           praevalens DSM 2228]
          Length = 165

 Score =  115 bits (288), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 59/161 (36%), Positives = 99/161 (61%), Gaps = 3/161 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGL   G+ +VD   ++   +  G I +        RL  ++  + +++K ++
Sbjct: 1   MRILGIDPGLATIGYALVDKETNHFDVLEYGVIKTSADTENIKRLEIIHRNIEELVKEFK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+E AVE++F NK+    + +GQAR + +L+ + A + V+EY P  IK+AV+G G  DK 
Sbjct: 61  PKEMAVEELFFNKNVKTAIAVGQARGVILLAGSQAGLKVAEYTPLQIKQAVVGYGRADKM 120

Query: 125 QIHMMLKMLMPESFF-KGKDAADALAIAVCHA--YHANSGY 162
           Q+  M+K L+  S   +  DAADALA+++CH   Y ++SG+
Sbjct: 121 QVQQMVKSLLNLSELPRPDDAADALAVSICHGHVYSSHSGW 161


>gi|188577436|ref|YP_001914365.1| Holliday junction resolvase [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|238689553|sp|B2STK3|RUVC_XANOP RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|188521888|gb|ACD59833.1| crossover junction endodeoxyribonuclease RuvC [Xanthomonas oryzae
           pv. oryzae PXO99A]
          Length = 174

 Score =  115 bits (288), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 64/155 (41%), Positives = 95/155 (61%), Gaps = 7/155 (4%)

Query: 6   RIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           RI+GIDPG +RTG GI+D+  G     V    ++       + RL +L  GL ++I+ +R
Sbjct: 3   RILGIDPGSQRTGIGIIDIDEGGRSRHVHHAPLILLGEGDFSQRLKRLLHGLGELIETYR 62

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+E A+E+VF+ K A + LKLG AR  AI +  +  +PV EYA   +K A++G G  DK 
Sbjct: 63  PDEVAIEKVFMGKSAASALKLGHARGAAICAVVMRDLPVHEYAATEVKLALVGKGGADKV 122

Query: 125 QIHMMLKMLMPESFFKGK---DAADALAIAVCHAY 156
           Q+  M+ +++     KGK   DAADALA+A+ HA+
Sbjct: 123 QVQHMVGIMLN---LKGKLQPDAADALAVAITHAH 154


>gi|330988968|gb|EGH87071.1| Holliday junction resolvase [Pseudomonas syringae pv. lachrymans
           str. M301315]
          Length = 174

 Score =  115 bits (288), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 64/157 (40%), Positives = 97/157 (61%), Gaps = 7/157 (4%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQ---SLAFRLCQLYEGLTDVIKNW 63
           I+GIDPG R TG+G+V   G    +V+SG    C+R     L  RL  +Y G+ +VIK +
Sbjct: 4   ILGIDPGSRITGYGVVRDTGRGCVYVASG----CIRTGSGELHERLQIVYRGVREVIKTY 59

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P    +E+VF+ ++A + LKLGQAR  AI++ A   + ++EY    +K+AV G G  +K
Sbjct: 60  GPVTMGIEKVFMARNADSALKLGQARGAAIVAGAEEALEIAEYTATQVKQAVAGTGGANK 119

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           +Q+ MM+  L+  +     DA+DALAIA+CHA+  +S
Sbjct: 120 EQVMMMVMHLLKLTQKPQIDASDALAIALCHAHTRSS 156


>gi|71738104|ref|YP_275914.1| Holliday junction resolvase [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|237800217|ref|ZP_04588678.1| Holliday junction resolvase [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|257487011|ref|ZP_05641052.1| Holliday junction resolvase [Pseudomonas syringae pv. tabaci ATCC
           11528]
 gi|289626495|ref|ZP_06459449.1| Holliday junction resolvase [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289650941|ref|ZP_06482284.1| Holliday junction resolvase [Pseudomonas syringae pv. aesculi str.
           2250]
 gi|110282922|sp|Q48FC3|RUVC_PSE14 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|71558657|gb|AAZ37868.1| crossover junction endodeoxyribonuclease RuvC [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|320323053|gb|EFW79142.1| Holliday junction resolvase [Pseudomonas syringae pv. glycinea str.
           B076]
 gi|320329675|gb|EFW85664.1| Holliday junction resolvase [Pseudomonas syringae pv. glycinea str.
           race 4]
 gi|330868611|gb|EGH03320.1| Holliday junction resolvase [Pseudomonas syringae pv. aesculi str.
           0893_23]
 gi|330877980|gb|EGH12129.1| Holliday junction resolvase [Pseudomonas syringae pv. glycinea str.
           race 4]
 gi|330892239|gb|EGH24900.1| Holliday junction resolvase [Pseudomonas syringae pv. mori str.
           301020]
 gi|331009347|gb|EGH89403.1| Holliday junction resolvase [Pseudomonas syringae pv. tabaci ATCC
           11528]
 gi|331023074|gb|EGI03131.1| Holliday junction resolvase [Pseudomonas syringae pv. oryzae str.
           1_6]
          Length = 174

 Score =  115 bits (288), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 64/157 (40%), Positives = 97/157 (61%), Gaps = 7/157 (4%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQ---SLAFRLCQLYEGLTDVIKNW 63
           I+GIDPG R TG+G+V   G    +V+SG    C+R     L  RL  +Y G+ +VIK +
Sbjct: 4   ILGIDPGSRITGYGVVRDTGRGCVYVASG----CIRTGSGELHERLQIVYRGVREVIKTY 59

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P    +E+VF+ ++A + LKLGQAR  AI++ A   + ++EY    +K+AV G G  +K
Sbjct: 60  GPVTMGIEKVFMARNADSALKLGQARGAAIVAGAEEALEIAEYTATQVKQAVAGTGGANK 119

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           +Q+ MM+  L+  +     DA+DALAIA+CHA+  +S
Sbjct: 120 EQVMMMVMHLLKLTQKPQIDASDALAIALCHAHTRSS 156


>gi|68171947|ref|ZP_00545259.1| Crossover junction endodeoxyribonuclease RuvC [Ehrlichia
           chaffeensis str. Sapulpa]
 gi|88658422|ref|YP_506861.1| crossover junction endodeoxyribonuclease RuvC [Ehrlichia
           chaffeensis str. Arkansas]
 gi|123736421|sp|Q2GI72|RUVC_EHRCR RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|67998626|gb|EAM85367.1| Crossover junction endodeoxyribonuclease RuvC [Ehrlichia
           chaffeensis str. Sapulpa]
 gi|88599879|gb|ABD45348.1| crossover junction endodeoxyribonuclease RuvC [Ehrlichia
           chaffeensis str. Arkansas]
          Length = 156

 Score =  115 bits (288), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 51/156 (32%), Positives = 100/156 (64%), Gaps = 1/156 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++I+G+DPGL  TGW I+ V+ D +  +  GT+V+  ++    RL +++  + D+++ ++
Sbjct: 1   MKIMGLDPGLNCTGWSILSVSKD-IKLIDKGTVVTNSKEDTGQRLRKIHTDVLDILRLYQ 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
            + A++E++F+NK+  +++ L  AR I +L+ +   IPV EY+ N +KK++ G GH  K+
Sbjct: 60  VDSASMEEIFINKNPKSSISLCYARGILLLTLSTKDIPVFEYSTNYVKKSITGNGHAKKE 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           Q+  M++ ++        D +D++A+A+CHAY   S
Sbjct: 120 QVSFMIEKILNVKCSGTYDISDSIAVALCHAYSKKS 155


>gi|213969184|ref|ZP_03397323.1| Holliday junction resolvase [Pseudomonas syringae pv. tomato T1]
 gi|301384821|ref|ZP_07233239.1| Holliday junction resolvase [Pseudomonas syringae pv. tomato Max13]
 gi|302063525|ref|ZP_07255066.1| Holliday junction resolvase [Pseudomonas syringae pv. tomato K40]
 gi|302130611|ref|ZP_07256601.1| Holliday junction resolvase [Pseudomonas syringae pv. tomato NCPPB
           1108]
 gi|302187158|ref|ZP_07263831.1| Holliday junction resolvase [Pseudomonas syringae pv. syringae 642]
 gi|213926182|gb|EEB59738.1| Holliday junction resolvase [Pseudomonas syringae pv. tomato T1]
 gi|330872654|gb|EGH06803.1| Holliday junction resolvase [Pseudomonas syringae pv. morsprunorum
           str. M302280PT]
 gi|330950610|gb|EGH50870.1| Holliday junction resolvase [Pseudomonas syringae Cit 7]
 gi|330964823|gb|EGH65083.1| Holliday junction resolvase [Pseudomonas syringae pv. actinidiae
           str. M302091]
 gi|331016438|gb|EGH96494.1| Holliday junction resolvase [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 174

 Score =  115 bits (287), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 64/157 (40%), Positives = 97/157 (61%), Gaps = 7/157 (4%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQS---LAFRLCQLYEGLTDVIKNW 63
           I+GIDPG R TG+G+V   G    +V+SG    C+R     L  RL  +Y G+ +VIK +
Sbjct: 4   ILGIDPGSRITGYGVVRDTGRGCVYVASG----CIRTGSGELHERLQIVYRGVREVIKTY 59

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P    +E+VF+ ++A + LKLGQAR  AI++ A   + ++EY    +K+AV G G  +K
Sbjct: 60  GPVTMGIEKVFMARNADSALKLGQARGAAIVAGAEEALEIAEYTATQVKQAVAGTGGANK 119

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           +Q+ MM+  L+  +     DA+DALAIA+CHA+  +S
Sbjct: 120 EQVMMMVMHLLKLTQKPQIDASDALAIALCHAHTRSS 156


>gi|330896127|gb|EGH28348.1| Holliday junction resolvase [Pseudomonas syringae pv. japonica str.
           M301072PT]
 gi|330936722|gb|EGH40907.1| Holliday junction resolvase [Pseudomonas syringae pv. pisi str.
           1704B]
 gi|330975329|gb|EGH75395.1| Holliday junction resolvase [Pseudomonas syringae pv. aptata str.
           DSM 50252]
          Length = 174

 Score =  115 bits (287), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 64/157 (40%), Positives = 97/157 (61%), Gaps = 7/157 (4%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQ---SLAFRLCQLYEGLTDVIKNW 63
           I+GIDPG R TG+G+V   G    +V+SG    C+R     L  RL  +Y G+ +VIK +
Sbjct: 4   ILGIDPGSRITGYGVVRDTGRGCVYVASG----CIRTGSGELHERLQIVYRGVREVIKTY 59

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P    +E+VF+ ++A + LKLGQAR  AI++ A   + ++EY    +K+AV G G  +K
Sbjct: 60  GPVTMGIEKVFMARNADSALKLGQARGAAIVAGAEEALEIAEYTATQVKQAVAGTGGANK 119

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           +Q+ MM+  L+  +     DA+DALAIA+CHA+  +S
Sbjct: 120 EQVMMMVMHLLKLTQKPQIDASDALAIALCHAHTRSS 156


>gi|254490135|ref|ZP_05103326.1| crossover junction endodeoxyribonuclease RuvC [Methylophaga
           thiooxidans DMS010]
 gi|224464621|gb|EEF80879.1| crossover junction endodeoxyribonuclease RuvC [Methylophaga
           thiooxydans DMS010]
          Length = 178

 Score =  115 bits (287), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 69/156 (44%), Positives = 103/156 (66%), Gaps = 1/156 (0%)

Query: 6   RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           RI+GIDPG R+TG+GI+++ G  +  V +G ++       A RL Q++EGLTD+I  ++P
Sbjct: 3   RILGIDPGSRKTGFGIIELDGKKIKHVINGRLM-VGDGEFADRLKQIFEGLTDLIDRYQP 61

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
           E  A+E+VF++K+A + LKLGQAR  AI +     + V+EY+   IKKAV+G GH  K Q
Sbjct: 62  EMMAIEKVFLHKNADSALKLGQARGAAICAAVSKDLAVAEYSATQIKKAVVGNGHAKKDQ 121

Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSG 161
           +  M+ +++       +DAADALA A+ HA HA+ G
Sbjct: 122 VQYMMSVILSLPEVPEEDAADALACALTHANHASIG 157


>gi|71065265|ref|YP_263992.1| Holliday junction resolvase [Psychrobacter arcticus 273-4]
 gi|97274883|sp|Q4FTV0|RUVC_PSYA2 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|71038250|gb|AAZ18558.1| putative crossover junction endodeoxyribonuclease [Psychrobacter
           arcticus 273-4]
          Length = 194

 Score =  115 bits (287), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 64/159 (40%), Positives = 96/159 (60%), Gaps = 6/159 (3%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW--- 63
           IIGIDPG R TG+GI+   GD L ++ SGTI +  ++ +  RL +++ GLT + ++    
Sbjct: 4   IIGIDPGSRMTGYGILQQTGDKLTYIDSGTIRTDTKE-MPERLKRIFNGLTRITQHHLKY 62

Query: 64  --RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
              P   A+EQVF+ ++  + LKLGQAR  AI +     + VSEY    IK+AV G G  
Sbjct: 63  ADEPIYTAIEQVFMAENPDSALKLGQARGAAIAAMVALDLEVSEYTARQIKQAVCGYGAA 122

Query: 122 DKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
            K+Q+  M+  ++   F   +DAAD LA A+CHA+ ++S
Sbjct: 123 AKEQVQDMVCRILTLDFVPQQDAADGLACAICHAHSSHS 161


>gi|298488210|ref|ZP_07006246.1| Crossover junction endodeoxyribonuclease ruvC [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|298157268|gb|EFH98352.1| Crossover junction endodeoxyribonuclease ruvC [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
          Length = 174

 Score =  115 bits (287), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 64/157 (40%), Positives = 97/157 (61%), Gaps = 7/157 (4%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQ---SLAFRLCQLYEGLTDVIKNW 63
           I+GIDPG R TG+G+V   G    +V+SG    C+R     L  RL  +Y G+ +VIK +
Sbjct: 4   ILGIDPGSRITGYGVVRDTGRGCIYVASG----CIRTGSGELHERLQIVYRGVREVIKTY 59

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P    +E+VF+ ++A + LKLGQAR  AI++ A   + ++EY    +K+AV G G  +K
Sbjct: 60  GPVTMGIEKVFMARNADSALKLGQARGAAIVAGAEEALEIAEYTATQVKQAVAGTGGANK 119

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           +Q+ MM+  L+  +     DA+DALAIA+CHA+  +S
Sbjct: 120 EQVMMMVMHLLKLTQKPQIDASDALAIALCHAHTRSS 156


>gi|170726919|ref|YP_001760945.1| Holliday junction resolvase [Shewanella woodyi ATCC 51908]
 gi|238688665|sp|B1KHG5|RUVC_SHEWM RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|169812266|gb|ACA86850.1| crossover junction endodeoxyribonuclease RuvC [Shewanella woodyi
           ATCC 51908]
          Length = 173

 Score =  115 bits (287), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 60/157 (38%), Positives = 101/157 (64%), Gaps = 7/157 (4%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQS---LAFRLCQLYEGLTDVIKNW 63
           I+GIDPG R TG+G++   G +  ++ SG    C+R +     +RL Q+++G++++I+ +
Sbjct: 4   ILGIDPGSRITGYGVIQCNGRSQIYLGSG----CIRTASDDFPYRLKQIFDGVSEIIRQY 59

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +P   A+E+VF+ K+A + LKLGQAR  AI++   A +PV+EY+   IK AV+G G  +K
Sbjct: 60  QPNFFAIERVFLAKNADSALKLGQARGAAIVAATNADLPVAEYSATQIKSAVVGTGKAEK 119

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
            Q+  M++ ++        DAADAL +A+CH + + S
Sbjct: 120 TQVQHMVQQILKLPAAPQADAADALGVAICHFHTSQS 156


>gi|319778456|ref|YP_004129369.1| Crossover junction endodeoxyribonuclease RuvC [Taylorella
           equigenitalis MCE9]
 gi|317108480|gb|ADU91226.1| Crossover junction endodeoxyribonuclease RuvC [Taylorella
           equigenitalis MCE9]
          Length = 182

 Score =  115 bits (287), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 62/153 (40%), Positives = 96/153 (62%), Gaps = 1/153 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGD-NLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +RI+GIDPGLR TG+G+++ + +  L +V+SGTI       L  RL  + EG+ +VI+++
Sbjct: 1   MRIVGIDPGLRFTGYGVIEASQNGQLQYVASGTIAIPTDLPLYKRLVHIMEGVQEVIEHF 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P+ + +E+V VNK+   TL LGQAR  A+++ A   + V EY    IKK+V   G   K
Sbjct: 61  NPKTSCIEEVVVNKNGKTTLLLGQARGAALVTLANLGLEVFEYPALQIKKSVSSNGRAPK 120

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
           +Q+  M+K ++  +     DAADALA A+ HA+
Sbjct: 121 EQVRQMVKYILNLNNMPSSDAADALACAITHAH 153


>gi|325929366|ref|ZP_08190496.1| Holliday junction endonuclease RuvC [Xanthomonas perforans 91-118]
 gi|325540278|gb|EGD11890.1| Holliday junction endonuclease RuvC [Xanthomonas perforans 91-118]
          Length = 174

 Score =  115 bits (287), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 64/155 (41%), Positives = 96/155 (61%), Gaps = 7/155 (4%)

Query: 6   RIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           RI+GIDPG +RTG GI+D+  G     V    ++       + RL +L +GL ++I+ +R
Sbjct: 3   RILGIDPGSQRTGIGIIDIDEGGRSRHVHHAPLMLLGEGDFSQRLKRLLQGLGELIEAYR 62

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+E A+E+VF+ K A + LKLG AR  AI +  +  +PV EYA   +K A++G G  DK 
Sbjct: 63  PDEVAIERVFMGKSAASALKLGHARGAAICAVVMRDLPVHEYAATEVKLALVGKGGADKV 122

Query: 125 QIHMMLKMLMPESFFKGK---DAADALAIAVCHAY 156
           Q+  M+ +++     KGK   DAADALA+A+ HA+
Sbjct: 123 QVQHMVGIMLN---LKGKLQPDAADALAVAITHAH 154


>gi|300112851|ref|YP_003759426.1| crossover junction endodeoxyribonuclease RuvC [Nitrosococcus
           watsonii C-113]
 gi|299538788|gb|ADJ27105.1| crossover junction endodeoxyribonuclease RuvC [Nitrosococcus
           watsonii C-113]
          Length = 174

 Score =  114 bits (286), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 53/132 (40%), Positives = 90/132 (68%), Gaps = 7/132 (5%)

Query: 6   RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQ---SLAFRLCQLYEGLTDVIKN 62
           RI+GIDPG R TG+G+++       ++++G    C+R     LA RL Q+++G+T++I++
Sbjct: 3   RILGIDPGSRITGYGLIETNNKKTIYIAAG----CIRAGGGGLAERLGQIFQGITEIIQD 58

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
           + P+E AVEQVF++++  + LKLGQAR  AI +   A +P+ EY P+ +K+AV+G G   
Sbjct: 59  YHPDEVAVEQVFMHQNPSSALKLGQARGAAICAAVNAVLPIFEYTPSQVKQAVVGRGDAA 118

Query: 123 KKQIHMMLKMLM 134
           K Q+  M+++L+
Sbjct: 119 KSQVQYMVRLLL 130


>gi|89094835|ref|ZP_01167768.1| Holliday junction resolvase [Oceanospirillum sp. MED92]
 gi|89080890|gb|EAR60129.1| Holliday junction resolvase [Oceanospirillum sp. MED92]
          Length = 172

 Score =  114 bits (286), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 69/157 (43%), Positives = 104/157 (66%), Gaps = 7/157 (4%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVR---QSLAFRLCQLYEGLTDVIKNW 63
           I+GIDPG R TG+G+++  G+   +V+SG    C+R     L  RL Q+Y G+++VI+ +
Sbjct: 3   ILGIDPGSRITGYGVINCVGNKNEYVASG----CIRIKGDELPERLQQVYAGVSEVIERY 58

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P+E A+EQVF+ ++A + LKLGQAR +AI++   A +PV EYA   +K++V+G G  DK
Sbjct: 59  CPQEFAIEQVFMARNADSALKLGQARGVAIVAGTNAELPVYEYAARKVKQSVVGKGSADK 118

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
            Q+  M+  ++        DAADALAIA+CHA+  NS
Sbjct: 119 AQVQHMVAHILKLPGLPQADAADALAIALCHAHTRNS 155


>gi|71909672|ref|YP_287259.1| crossover junction endodeoxyribonuclease RuvC [Dechloromonas
           aromatica RCB]
 gi|97274763|sp|Q478E2|RUVC_DECAR RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|71849293|gb|AAZ48789.1| Crossover junction endodeoxyribonuclease RuvC [Dechloromonas
           aromatica RCB]
          Length = 179

 Score =  114 bits (286), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 58/129 (44%), Positives = 87/129 (67%)

Query: 6   RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           RI+GIDPGLR TG+G++++ G  L +V+SG I S  ++SL  R+  L+ G+++VI  ++P
Sbjct: 7   RILGIDPGLRVTGFGVIELHGKQLVYVASGCIKSNDKESLPERIKTLFAGISEVIATYQP 66

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
            +AAVE+VFVN +  +TL LGQAR  AI +   A +PV+EY     K+AV+G G   K Q
Sbjct: 67  NQAAVEKVFVNVNPQSTLLLGQARGAAISALVHADLPVAEYTALQTKQAVVGHGKAAKDQ 126

Query: 126 IHMMLKMLM 134
           +  M+  L+
Sbjct: 127 VQAMVVRLL 135


>gi|152996210|ref|YP_001341045.1| crossover junction endodeoxyribonuclease RuvC [Marinomonas sp.
           MWYL1]
 gi|150837134|gb|ABR71110.1| crossover junction endodeoxyribonuclease RuvC [Marinomonas sp.
           MWYL1]
          Length = 185

 Score =  114 bits (286), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 69/161 (42%), Positives = 107/161 (66%), Gaps = 7/161 (4%)

Query: 4   SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVR---QSLAFRLCQLYEGLTDVI 60
           + RI+ IDPG R TG+GIVDV      +VSSG    C+R   ++L+ RL  +++ ++ ++
Sbjct: 3   TTRILAIDPGSRITGFGIVDVTNGKSIYVSSG----CIRLPDEALSVRLKYIFQNVSALL 58

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             ++P E A+E+VF+ K+A + LKLGQAR  AI++ +L  + V EYA   +K++V+G G+
Sbjct: 59  DEYQPNEFAIEEVFLAKNANSALKLGQARGAAIVAASLKELIVHEYAARRVKQSVVGNGN 118

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSG 161
            DK Q+ MM+++L+  +     DAADALAIA+CHA    SG
Sbjct: 119 ADKAQVQMMVQLLLNITSKPQADAADALAIALCHANTRTSG 159


>gi|323698441|ref|ZP_08110353.1| crossover junction endodeoxyribonuclease RuvC [Desulfovibrio sp.
           ND132]
 gi|323458373|gb|EGB14238.1| crossover junction endodeoxyribonuclease RuvC [Desulfovibrio
           desulfuricans ND132]
          Length = 167

 Score =  114 bits (286), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 62/155 (40%), Positives = 97/155 (62%), Gaps = 1/155 (0%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M + + ++G+DPG R TG+GIV         V +GTI + VR+ +A R+  L+  L ++I
Sbjct: 1   MAEGLVVLGLDPGTRVTGYGIVRELSGKAELVDTGTIRTPVREDMATRMGVLFNRLQELI 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
           +   P EAA+E VFV+K+  + LKLGQAR   + + A+  IP+ EY P+ +KK ++G+G 
Sbjct: 61  RLHAPAEAAIENVFVSKNPSSALKLGQARGACMAACAVHNIPMGEYEPSKVKKNLVGLGS 120

Query: 121 GDKKQI-HMMLKMLMPESFFKGKDAADALAIAVCH 154
             K Q+ +M+   L  +     +DA+DALAIA+CH
Sbjct: 121 APKSQVAYMVAHCLGVKKPDWPEDASDALAIAICH 155


>gi|294626864|ref|ZP_06705456.1| Holliday junction resolvase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|294665403|ref|ZP_06730691.1| Holliday junction resolvase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292598878|gb|EFF43023.1| Holliday junction resolvase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292604814|gb|EFF48177.1| Holliday junction resolvase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 174

 Score =  114 bits (286), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 62/152 (40%), Positives = 94/152 (61%), Gaps = 1/152 (0%)

Query: 6   RIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           RI+GIDPG +RTG GI+D+  G     V    ++       + RL +L +GL ++I+ +R
Sbjct: 3   RILGIDPGSQRTGIGIIDIDEGGRTRHVHHAPLMLLGEGDFSQRLKRLLQGLGELIEIYR 62

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+E A+E+VF+ K A + LKLG AR  AI +  +  +PV EYA   IK A++G G  DK 
Sbjct: 63  PDEVAIEKVFMGKSAASALKLGHARGAAICAVVMRDLPVHEYAAKEIKLALVGKGGADKV 122

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
           Q+  M+ +++  +     DAADALA+A+ HA+
Sbjct: 123 QVQHMVGIMLNLNGKLQPDAADALAVAITHAH 154


>gi|28871124|ref|NP_793743.1| crossover junction endodeoxyribonuclease RuvC [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|37999571|sp|Q87Y33|RUVC_PSESM RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|28854374|gb|AAO57438.1| crossover junction endodeoxyribonuclease RuvC [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 176

 Score =  114 bits (286), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 64/159 (40%), Positives = 97/159 (61%), Gaps = 9/159 (5%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQS-----LAFRLCQLYEGLTDVIK 61
           I+GIDPG R TG+G+V   G    +V+SG    C+R       L  RL  +Y G+ +VIK
Sbjct: 4   ILGIDPGSRITGYGVVRDTGRGCVYVASG----CIRTGTGSGELHERLQIVYRGVREVIK 59

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
            + P    +E+VF+ ++A + LKLGQAR  AI++ A   + ++EY    +K+AV G G  
Sbjct: 60  TYGPVTMGIEKVFMARNADSALKLGQARGAAIVAGAEEALEIAEYTATQVKQAVAGTGGA 119

Query: 122 DKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           +K+Q+ MM+  L+  +     DA+DALAIA+CHA+  +S
Sbjct: 120 NKEQVMMMVMHLLKLTQKPQIDASDALAIALCHAHTRSS 158


>gi|330959264|gb|EGH59524.1| Holliday junction resolvase [Pseudomonas syringae pv. maculicola
           str. ES4326]
          Length = 174

 Score =  114 bits (285), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 64/157 (40%), Positives = 97/157 (61%), Gaps = 7/157 (4%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQS---LAFRLCQLYEGLTDVIKNW 63
           I+GIDPG R TG+G+V   G    +V+SG    C+R     L  RL  +Y G+ +VIK +
Sbjct: 4   ILGIDPGSRITGYGVVRDTGRGCVYVASG----CIRTGSGELHERLQIVYRGVREVIKTY 59

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P    +E+VF+ ++A + LKLGQAR  AI++ A   + ++EY    +K+AV G G  +K
Sbjct: 60  GPVTMGIEKVFMARNADSALKLGQARGGAIVAGAEEALEIAEYTATQVKQAVAGTGGANK 119

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           +Q+ MM+  L+  +     DA+DALAIA+CHA+  +S
Sbjct: 120 EQVMMMVMHLLKLTQKPQIDASDALAIALCHAHTRSS 156


>gi|326795233|ref|YP_004313053.1| Crossover junction endodeoxyribonuclease ruvC [Marinomonas
           mediterranea MMB-1]
 gi|326545997|gb|ADZ91217.1| Crossover junction endodeoxyribonuclease ruvC [Marinomonas
           mediterranea MMB-1]
          Length = 185

 Score =  114 bits (285), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 71/159 (44%), Positives = 102/159 (64%), Gaps = 7/159 (4%)

Query: 6   RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVR---QSLAFRLCQLYEGLTDVIKN 62
           RI+ IDPG R TG+G++D       +VSSG    CVR    +LA RL  ++E ++++I  
Sbjct: 3   RILAIDPGSRITGYGVIDSKNGKTTYVSSG----CVRLPDANLAVRLRVIFESVSELISQ 58

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
           + P E A+E+VF+ K+A + LKLGQAR  AI+S  +A +PV EYA   +K+++ G G+ D
Sbjct: 59  FSPSEFAIEEVFMAKNASSALKLGQARGAAIVSAGVADLPVYEYAARRVKQSIAGNGNAD 118

Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSG 161
           K QI  M+++L+        DAADALAIA+CHA    SG
Sbjct: 119 KAQIQAMVQLLLKLPSPPQADAADALAIAMCHANTRTSG 157


>gi|330968892|gb|EGH68958.1| Holliday junction resolvase [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 174

 Score =  114 bits (285), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 63/157 (40%), Positives = 96/157 (61%), Gaps = 7/157 (4%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQ---SLAFRLCQLYEGLTDVIKNW 63
           I+GIDPG R TG+G+V   G    +V+SG    C+R     L  RL  +Y G+ +VIK +
Sbjct: 4   ILGIDPGSRITGYGVVRDTGRGCVYVASG----CIRTGSGELHERLQIVYRGVREVIKTY 59

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P    +E+VF+ ++A + LKLGQAR   I++ A   + ++EY    +K+AV G G  +K
Sbjct: 60  EPVTMGIEKVFMARNADSALKLGQARGAVIVAGAEEALEIAEYTATQVKQAVAGTGGANK 119

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           +Q+ MM+  L+  +     DA+DALAIA+CHA+  +S
Sbjct: 120 EQVMMMVMHLLKLTQKPQIDASDALAIALCHAHTRSS 156


>gi|258405867|ref|YP_003198609.1| Holliday junction resolvase [Desulfohalobium retbaense DSM 5692]
 gi|257798094|gb|ACV69031.1| crossover junction endodeoxyribonuclease RuvC [Desulfohalobium
           retbaense DSM 5692]
          Length = 170

 Score =  114 bits (285), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 57/148 (38%), Positives = 87/148 (58%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           ++G+DPG R TG+G+V      L  + +GTI     + L+ RL  L   +  VI  W P 
Sbjct: 9   VLGLDPGSRCTGFGVVRERSGQLTLLETGTIRPKSSEGLSLRLGALLTQIAVVIDRWSPH 68

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           EAA+E VFV ++  + LKLGQAR  A+ +     + VSEYAP  +KK ++G G  +K Q+
Sbjct: 69  EAAIEDVFVARNTASALKLGQARGAALAACGSRGLDVSEYAPTVVKKTLVGAGRAEKSQV 128

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCH 154
             M+  ++       +D++DALA+A+CH
Sbjct: 129 AFMVGQMLGCKPQWAEDSSDALAVALCH 156


>gi|21243876|ref|NP_643458.1| Holliday junction resolvase [Xanthomonas axonopodis pv. citri str.
           306]
 gi|24638205|sp|Q8PHU9|RUVC_XANAC RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|21109478|gb|AAM37994.1| holliday junction resolvase [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 174

 Score =  114 bits (284), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 62/152 (40%), Positives = 94/152 (61%), Gaps = 1/152 (0%)

Query: 6   RIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           RI+GIDPG +RTG GI+D+  G     V    ++       + RL +L +GL ++I+ +R
Sbjct: 3   RILGIDPGSQRTGIGIIDIDEGGRSRHVHHAPLMLLGEGDFSQRLKRLLQGLGELIEIYR 62

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+E A+E+VF+ K A + LKLG AR  AI +  +  +PV EYA   IK A++G G  DK 
Sbjct: 63  PDEVAIEKVFMGKSAASALKLGHARGAAICAVVMRDLPVHEYAAKEIKLALVGKGGADKV 122

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
           Q+  M+ +++  +     DAADALA+A+ HA+
Sbjct: 123 QVQHMVGIMLNLNGKLQPDAADALAVAITHAH 154


>gi|54308307|ref|YP_129327.1| Holliday junction resolvase [Photobacterium profundum SS9]
 gi|90411662|ref|ZP_01219672.1| Holliday junction resolvase [Photobacterium profundum 3TCK]
 gi|81615323|sp|Q6LT51|RUVC_PHOPR RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|46912735|emb|CAG19525.1| putative crossover junctionendodeoxyribonuclease RuvC
           [Photobacterium profundum SS9]
 gi|90327552|gb|EAS43905.1| Holliday junction resolvase [Photobacterium profundum 3TCK]
          Length = 173

 Score =  114 bits (284), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 69/153 (45%), Positives = 101/153 (66%), Gaps = 7/153 (4%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQS---LAFRLCQLYEGLTDVIKNW 63
           I+GIDPG R TG+G++   G NL ++ SG    C+R S   +  RL Q+Y G+++VI  +
Sbjct: 4   ILGIDPGSRITGYGVIRQVGRNLEYLGSG----CIRTSAEDIPGRLKQIYAGVSEVITQF 59

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +P+  A+E+VF+ K+A + LKLGQAR  AI++   A +PVSEYA   IK+AV+G G  DK
Sbjct: 60  QPDTFAIEEVFMGKNASSALKLGQARGSAIVAAVNADLPVSEYAARLIKQAVVGTGAADK 119

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
            Q+  M+  ++        DAADALA+A+CHA+
Sbjct: 120 AQVQHMVCSVLKLPGKPQADAADALAVAICHAH 152


>gi|317484653|ref|ZP_07943556.1| crossover junction endodeoxyribonuclease RuvC [Bilophila
           wadsworthia 3_1_6]
 gi|316924127|gb|EFV45310.1| crossover junction endodeoxyribonuclease RuvC [Bilophila
           wadsworthia 3_1_6]
          Length = 169

 Score =  114 bits (284), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 66/157 (42%), Positives = 91/157 (57%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M +SI IIGIDPG R TGWG+V      L  V  G I   +    A RL  +++ +  ++
Sbjct: 1   MSQSITIIGIDPGSRNTGWGVVREVSGVLQLVDCGVIRPPLDGEFASRLGVIFKEMHRLL 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
              +P+EA+VEQVF  K+A   LKLGQAR  AI + A   +PV +Y P  IKK+++GVG 
Sbjct: 61  GRLKPDEASVEQVFTAKNAATALKLGQARGAAIAACAAYDLPVRDYEPTVIKKSLVGVGR 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYH 157
            DK+Q+  M+  ++        D  DALA A+CH  H
Sbjct: 121 ADKEQVSFMVGRVLGVKPDWAVDTGDALAAAICHLTH 157


>gi|300309760|ref|YP_003773852.1| Holliday junction resolvasome, endonuclease subunit [Herbaspirillum
           seropedicae SmR1]
 gi|300072545|gb|ADJ61944.1| Holliday junction resolvasome, endonuclease subunit protein
           [Herbaspirillum seropedicae SmR1]
          Length = 180

 Score =  114 bits (284), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 63/152 (41%), Positives = 95/152 (62%), Gaps = 1/152 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++I+GIDPGLR TG+G++   G+ L +++SGTI       L  RL  +   + +V+K++ 
Sbjct: 1   MKILGIDPGLRTTGFGVIHKQGNTLSYIASGTI-KTPDGDLPSRLKVILASVGEVVKSYT 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ AA+E+VFVN +  +TL LGQAR  AI +   A + V+EY    +K+AV G G   K 
Sbjct: 60  PDCAAIEKVFVNVNPHSTLLLGQARGAAICALVAADLAVAEYTALQVKQAVAGHGRAQKA 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
           Q+  M+  L+      G DAADAL +A+CHA+
Sbjct: 120 QVQEMVARLLKLPGLPGTDAADALGVAICHAH 151


>gi|325479411|gb|EGC82507.1| crossover junction endodeoxyribonuclease RuvC [Anaerococcus
           prevotii ACS-065-V-Col13]
          Length = 164

 Score =  113 bits (283), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 53/150 (35%), Positives = 89/150 (59%), Gaps = 1/150 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG+   G+G+++   + +  + +G I +  +     RL  LY+ L D+I  + P+
Sbjct: 3   ILGIDPGIAIMGYGVIEFKNNKVKVLENGVITTSSKTKTGKRLELLYDNLDDIINEFSPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E++F N +    + +G AR I +L      +P+ EY P  IK+A+ G G  +KKQ+
Sbjct: 63  EFAIEELFFNANVKTAITVGHARGIQVLCAQKNNLPIYEYTPLQIKQAITGYGRANKKQM 122

Query: 127 HMML-KMLMPESFFKGKDAADALAIAVCHA 155
            + + K+L  +   K  DAADAL++A+CHA
Sbjct: 123 QLTITKLLNLKEIPKPDDAADALSVALCHA 152


>gi|119774976|ref|YP_927716.1| Holliday junction resolvase [Shewanella amazonensis SB2B]
 gi|166233296|sp|A1S6P0|RUVC_SHEAM RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|119767476|gb|ABM00047.1| crossover junction endodeoxyribonuclease RuvC [Shewanella
           amazonensis SB2B]
          Length = 173

 Score =  113 bits (283), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 64/156 (41%), Positives = 102/156 (65%), Gaps = 8/156 (5%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQS---LAFRLCQLYEGLTDVIKNW 63
           I+G+DPG R TG+G++   G +  ++ SG    C+R S   L  RL Q+++GL ++I+ +
Sbjct: 4   ILGVDPGSRITGYGVIQCQGRHQLYLGSG----CIRTSSDELPDRLKQIFDGLQEIIRQY 59

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +P + A+E+VF+ K+A + LKLGQAR  AI++  +A +PV+EY+   IK AV+G G   K
Sbjct: 60  QPSQFAIERVFMAKNADSALKLGQARGAAIVAATVAGLPVAEYSATQIKNAVVGTGRAQK 119

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHAN 159
            Q+  M++ ++        DAADALA+A+CH YH +
Sbjct: 120 AQVQHMVQQMLKLPAAPQADAADALAVAMCH-YHTH 154


>gi|220935404|ref|YP_002514303.1| Crossover junction endodeoxyribonuclease [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|219996714|gb|ACL73316.1| Crossover junction endodeoxyribonuclease [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 179

 Score =  113 bits (283), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 67/155 (43%), Positives = 100/155 (64%), Gaps = 7/155 (4%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVR---QSLAFRLCQLYEGLTDVIK 61
           +RI+GIDPG   TG+GIVD  G     V SG    C+R   + L  RL ++++ ++ +++
Sbjct: 1   MRILGIDPGSLVTGFGIVDSDGRRSVHVHSG----CIRVKGEDLVVRLGRIFDEVSLLVE 56

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
             RPE  A+EQVFV+++  + LKLGQAR  AI +   A +PVSEY+P +IK+AV+G G  
Sbjct: 57  THRPEVLAIEQVFVSRNPSSALKLGQARGAAICAGVRAGLPVSEYSPTSIKQAVVGTGAA 116

Query: 122 DKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
            K+Q+  M+ M++        D ADALA+A+CHA+
Sbjct: 117 SKEQVQHMITMILSLKDAPAADQADALAVALCHAH 151


>gi|116625019|ref|YP_827175.1| crossover junction endodeoxyribonuclease RuvC [Candidatus
           Solibacter usitatus Ellin6076]
 gi|122252542|sp|Q01TY0|RUVC_SOLUE RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|116228181|gb|ABJ86890.1| crossover junction endodeoxyribonuclease RuvC [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 166

 Score =  113 bits (283), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 61/155 (39%), Positives = 94/155 (60%), Gaps = 3/155 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++G+D G  RTGWG++D  G     V++G I +  +     RL ++   L  +I+   
Sbjct: 1   MRVLGVDCGSERTGWGVIDSDGGCHRMVAAGVIRTSPKCPFDRRLLEIGTALRGLIREHT 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           PE AAVE+VF   +A   LKL   R +A+L+ A A +  +EY+P  +K +V+G G  +K 
Sbjct: 61  PEFAAVEEVFHAVNAKTALKLAHVRGVALLTIAEAGVVFAEYSPLEVKMSVVGYGRAEKS 120

Query: 125 QIHMMLKML--MPESFFKGKDAADALAIAVCHAYH 157
           Q+ MM++ L  +PE     +DA+DALAIA+CHA H
Sbjct: 121 QVQMMVQSLLRLPE-VIASEDASDALAIAICHATH 154


>gi|167750453|ref|ZP_02422580.1| hypothetical protein EUBSIR_01429 [Eubacterium siraeum DSM 15702]
 gi|167656604|gb|EDS00734.1| hypothetical protein EUBSIR_01429 [Eubacterium siraeum DSM 15702]
          Length = 167

 Score =  113 bits (283), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 56/157 (35%), Positives = 87/157 (55%), Gaps = 1/157 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RIIGIDPG    G+G+VD  G        G I +        RLC++YE    ++ NW+
Sbjct: 1   MRIIGIDPGYAIVGFGVVDYIGGKFSVKDFGAITTDKDTPFPKRLCEIYEDYCQILDNWK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  ++E+++   +    + + QAR I I++ A   I ++EY P  +K+AV+G G   KK
Sbjct: 61  PDALSIERLYFTNNQKTGIDVAQARGIIIMAAAQRGIEINEYTPLQVKQAVVGYGQAVKK 120

Query: 125 QIHMMLKMLMPESFF-KGKDAADALAIAVCHAYHANS 160
           Q+  M K ++   F  K  D ADALA+ +CHA  + S
Sbjct: 121 QVQEMTKNILKLPFVPKPDDTADALAMTICHAQTSGS 157


>gi|57238746|ref|YP_179882.1| crossover junction endodeoxyribonuclease RuvC [Ehrlichia
           ruminantium str. Welgevonden]
 gi|58578667|ref|YP_196879.1| crossover junction endodeoxyribonuclease RuvC [Ehrlichia
           ruminantium str. Welgevonden]
 gi|81557368|sp|Q5HCG1|RUVC_EHRRW RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|57160825|emb|CAH57723.1| crossover junction endodeoxyribonuclease RuvC [Ehrlichia
           ruminantium str. Welgevonden]
 gi|58417293|emb|CAI26497.1| Crossover junction endodeoxyribonuclease RuvC [Ehrlichia
           ruminantium str. Welgevonden]
          Length = 160

 Score =  113 bits (283), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 51/155 (32%), Positives = 99/155 (63%), Gaps = 3/155 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDN---LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           + IIGIDP L  TGW I+ V  +N   +  V +G+I++  ++++  RL ++Y  L +++ 
Sbjct: 1   MNIIGIDPSLNSTGWAILSVHDNNYNEIRLVDNGSILTSNKKTIGERLNKIYSELLNILN 60

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
           +++ + A++E++F+NK+  ++  L  AR + +L+  +A IP+ EY+ N +KK++ G GH 
Sbjct: 61  SYKVDTASMEEIFINKNPKSSTLLCYARGVLLLTLNVACIPLFEYSANRVKKSITGNGHA 120

Query: 122 DKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
            K+Q+  M++ ++        D +DA+A+A+CH Y
Sbjct: 121 KKEQVCFMIENILNIKCHGTYDISDAIAVAICHIY 155


>gi|254468664|ref|ZP_05082070.1| crossover junction endodeoxyribonuclease RuvC [beta proteobacterium
           KB13]
 gi|207087474|gb|EDZ64757.1| crossover junction endodeoxyribonuclease RuvC [beta proteobacterium
           KB13]
          Length = 175

 Score =  113 bits (283), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 55/153 (35%), Positives = 95/153 (62%), Gaps = 3/153 (1%)

Query: 4   SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAF--RLCQLYEGLTDVIK 61
           S R+IGIDPGLR TG+GIVD       +++SG ++    + L +  RL  +++ +++++ 
Sbjct: 3   STRVIGIDPGLRITGYGIVDCENKKTTYITSG-VIKTTSEKLPYPERLKIIFDEVSEIVS 61

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
             +P +  +E+ FVN +A ++L LGQAR +A+ +    ++ + EY    IKK+V+G GH 
Sbjct: 62  KHQPNQMCIEKTFVNMNANSSLALGQARGVAMAAGIQHQLQIYEYTALQIKKSVVGNGHA 121

Query: 122 DKKQIHMMLKMLMPESFFKGKDAADALAIAVCH 154
           +K Q+  M++ L+      G D++DALA  +CH
Sbjct: 122 EKIQVQSMVQKLLNLPEVLGPDSSDALACVLCH 154


>gi|121998990|ref|YP_001003777.1| Holliday junction resolvase [Halorhodospira halophila SL1]
 gi|166233197|sp|A1WZ63|RUVC_HALHL RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|121590395|gb|ABM62975.1| crossover junction endodeoxyribonuclease RuvC [Halorhodospira
           halophila SL1]
          Length = 167

 Score =  113 bits (283), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 59/129 (45%), Positives = 85/129 (65%), Gaps = 1/129 (0%)

Query: 6   RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           RI+GIDPG R TG+GIVD  G     V+ GT+    +  LA RL ++++GL ++I   RP
Sbjct: 3   RILGIDPGSRVTGYGIVD-DGRPTRLVTEGTLRLPRQAGLAERLGRIFDGLAELIAEHRP 61

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
           +E A+EQVFV+++A   LKLG AR  A+ +   A +PV+EYAP  IK+A+ G G  DK Q
Sbjct: 62  QEVALEQVFVHRNADTALKLGHARGAALTACVQAGLPVAEYAPARIKQAIAGSGRADKTQ 121

Query: 126 IHMMLKMLM 134
           +  M++ L+
Sbjct: 122 VGYMVRALL 130


>gi|78357367|ref|YP_388816.1| Holliday junction resolvase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|90146452|sp|Q30YX5|RUVC_DESDG RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|78219772|gb|ABB39121.1| Holliday junction endonuclease RuvC [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 166

 Score =  113 bits (283), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 66/152 (43%), Positives = 88/152 (57%), Gaps = 1/152 (0%)

Query: 3   KSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
           + I ++GIDPG R TGWGIV      L  V  G  V       + RL  +Y GL +VI  
Sbjct: 4   QGITVLGIDPGSRTTGWGIVREVSGVLTLVDCGA-VRPRGDEFSDRLGAIYHGLHEVIAR 62

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
             P+EA+VE VF  K+A + LKLGQAR  A+ + A   +PV+ YAP  IKK ++GVG  +
Sbjct: 63  HMPDEASVENVFTAKNAASALKLGQARGAAVAACAAHHLPVASYAPTEIKKTIVGVGRAE 122

Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAIAVCH 154
           K+Q+  M+  L+      G D  DALA A+CH
Sbjct: 123 KEQVSFMVARLLGVKGDWGPDTGDALAAAICH 154


>gi|319786204|ref|YP_004145679.1| crossover junction endodeoxyribonuclease RuvC [Pseudoxanthomonas
           suwonensis 11-1]
 gi|317464716|gb|ADV26448.1| crossover junction endodeoxyribonuclease RuvC [Pseudoxanthomonas
           suwonensis 11-1]
          Length = 181

 Score =  113 bits (283), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 63/132 (47%), Positives = 85/132 (64%), Gaps = 2/132 (1%)

Query: 4   SIRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
           ++RI+GIDPG +RTG GI+DV AG  +  V    +V       A RL +L  GLT +I+ 
Sbjct: 10  AVRILGIDPGSQRTGVGIIDVEAGGRVRHVHHQPLVLLGEGDFAARLKRLLHGLTGLIEE 69

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
           ++P+E A+EQVFV + A + LKLGQAR  AI +  L  +PVSEYA   +K AV+G G  D
Sbjct: 70  YQPQEVAIEQVFVGRSADSALKLGQARGAAISAVVLRDLPVSEYAAREVKLAVVGTGAAD 129

Query: 123 KKQI-HMMLKML 133
           K Q+ HM+  ML
Sbjct: 130 KAQVQHMVAAML 141


>gi|288939915|ref|YP_003442155.1| crossover junction endodeoxyribonuclease RuvC [Allochromatium
           vinosum DSM 180]
 gi|288895287|gb|ADC61123.1| crossover junction endodeoxyribonuclease RuvC [Allochromatium
           vinosum DSM 180]
          Length = 178

 Score =  113 bits (282), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 60/154 (38%), Positives = 92/154 (59%), Gaps = 7/154 (4%)

Query: 6   RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVR---QSLAFRLCQLYEGLTDVIKN 62
           RI+GIDPG R TG+G++D  G +   V+SG    C+R        RL  +++ +  ++  
Sbjct: 10  RILGIDPGSRNTGFGVIDTDGHHSVRVASG----CIRVGEHPWPDRLGLIFDQVAAIVAE 65

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
           ++P E AVEQ+   +D  A LK+GQAR   + +       V EY+P ++K AV+G G  D
Sbjct: 66  YQPHEMAVEQLIFARDPTAALKIGQARGAVLCAGLKGGAIVHEYSPKSVKLAVVGSGGAD 125

Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
           K Q+  M+++L+      G+D ADALAIA+CHA+
Sbjct: 126 KSQVQHMVRVLLALPETPGEDEADALAIALCHAH 159


>gi|148653235|ref|YP_001280328.1| Holliday junction resolvase [Psychrobacter sp. PRwf-1]
 gi|172048526|sp|A5WFD7|RUVC_PSYWF RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|148572319|gb|ABQ94378.1| Holliday junction endonuclease RuvC [Psychrobacter sp. PRwf-1]
          Length = 194

 Score =  113 bits (282), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 64/159 (40%), Positives = 97/159 (61%), Gaps = 6/159 (3%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK----- 61
           IIGIDPG R TG+GI+   GD L ++ +GTI +  ++ +  RL ++++GLT + +     
Sbjct: 4   IIGIDPGSRMTGYGIIHQKGDTLRYLDAGTIRTDTKE-MPERLKRIFQGLTRITQYHLKY 62

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
           +  P  AAVEQVF+ ++  + LKLGQAR  AI +     + VSEY    IK++V G G  
Sbjct: 63  SDEPIHAAVEQVFMAENPDSALKLGQARGAAIAALVALDLEVSEYTARQIKQSVCGYGAA 122

Query: 122 DKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           DK Q+  M+  ++       +DAAD LA A+CHA+ ++S
Sbjct: 123 DKVQVQEMVCRILKLDVTPQQDAADGLACAICHAHSSHS 161


>gi|127513005|ref|YP_001094202.1| crossover junction endodeoxyribonuclease RuvC [Shewanella loihica
           PV-4]
 gi|166233299|sp|A3QEP5|RUVC_SHELP RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|126638300|gb|ABO23943.1| crossover junction endodeoxyribonuclease RuvC [Shewanella loihica
           PV-4]
          Length = 173

 Score =  113 bits (282), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 60/157 (38%), Positives = 99/157 (63%), Gaps = 7/157 (4%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQS---LAFRLCQLYEGLTDVIKNW 63
           I+G+DPG R TG+G++   G    ++ SG    C+R     L  RL  +++G++++I+ +
Sbjct: 4   ILGVDPGSRITGYGVIQCQGRQQIYLGSG----CIRTQSDDLPSRLKVIFDGISEIIRQY 59

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +P+E A+E+VF+ K+A + LKLGQAR  AI++   A++PV+EY+   IK AV+G G   K
Sbjct: 60  QPDEFAIERVFLAKNADSALKLGQARGAAIVAATNAQLPVAEYSATQIKNAVVGTGRAQK 119

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
            Q+  M++ ++        DAADAL +A+CH +   S
Sbjct: 120 SQVQHMVQQILKLPAAPQADAADALGVALCHFHTYQS 156


>gi|295698522|ref|YP_003603177.1| crossover junction endodeoxyribonuclease RuvC [Candidatus Riesia
           pediculicola USDA]
 gi|291156987|gb|ADD79432.1| crossover junction endodeoxyribonuclease RuvC [Candidatus Riesia
           pediculicola USDA]
          Length = 177

 Score =  113 bits (282), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 58/158 (36%), Positives = 93/158 (58%), Gaps = 7/158 (4%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLA---FRLCQLYEGLTDVIK 61
           I I+GIDPG   TG+GIV      + ++  G    C++  LA    RL  +Y+G+  +I 
Sbjct: 2   ITILGIDPGSCITGYGIVQSQKKRILYIDGG----CIKNRLADMPNRLKTIYDGVQKIIH 57

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
            +RP+  AVEQ+FV+K+  + LKL QA+A+AIL+    ++P+ EY+   ++K+V+G G  
Sbjct: 58  KYRPDIFAVEQIFVSKNVSSALKLSQAKAVAILAAVKNQLPIFEYSTKKVRKSVVGTGSA 117

Query: 122 DKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHAN 159
            K+ I   +  ++  S     D ADALA+A+ H +  N
Sbjct: 118 KKEHIQYAVHAILKLSSHPQSDIADALAVAIAHIFSEN 155


>gi|194433925|ref|ZP_03066197.1| crossover junction endodeoxyribonuclease RuvC [Shigella dysenteriae
           1012]
 gi|194417797|gb|EDX33894.1| crossover junction endodeoxyribonuclease RuvC [Shigella dysenteriae
           1012]
          Length = 174

 Score =  112 bits (281), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 54/128 (42%), Positives = 85/128 (66%), Gaps = 1/128 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I + V   L FRL  +Y G+T++I  ++P+
Sbjct: 5   ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKV-DDLPFRLKLIYAGVTEIITQFQPD 63

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR +AI++     +PV EYA   +K+ V+G+G  +K Q+
Sbjct: 64  YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 123

Query: 127 HMMLKMLM 134
             M++ L+
Sbjct: 124 QHMVRTLL 131


>gi|260220027|emb|CBA27153.1| Crossover junction endodeoxyribonuclease ruvC [Curvibacter putative
           symbiont of Hydra magnipapillata]
          Length = 182

 Score =  112 bits (281), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 70/158 (44%), Positives = 102/158 (64%), Gaps = 2/158 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVS--CVRQSLAFRLCQLYEGLTDVIKN 62
           +RI+GIDPGLR TG+G+VDV G ++ +V+SGTI +     ++L  RL  L++G+ +V++ 
Sbjct: 1   MRILGIDPGLRTTGFGVVDVVGADVRYVASGTIRTEHLDTRALPARLKILFDGIGEVVER 60

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
           +RP  A+VE VFVN +  +TL LGQAR   + +   A +PV+EY    +K+AV G G   
Sbjct: 61  YRPTCASVEIVFVNVNPQSTLLLGQARGALVTALVCANLPVAEYTALQMKQAVAGHGRAH 120

Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           K QI  M+K L+      G DAADAL +A+ HA+   S
Sbjct: 121 KDQIQEMVKRLLHLPGLPGPDAADALGLAITHAHAGKS 158


>gi|156740729|ref|YP_001430858.1| Holliday junction resolvase [Roseiflexus castenholzii DSM 13941]
 gi|156232057|gb|ABU56840.1| crossover junction endodeoxyribonuclease RuvC [Roseiflexus
           castenholzii DSM 13941]
          Length = 168

 Score =  112 bits (281), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 67/154 (43%), Positives = 93/154 (60%), Gaps = 1/154 (0%)

Query: 6   RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           R IGIDPG  R GWGIV+  G  +  V  G + +    S A RL QLY  L  +I  + P
Sbjct: 5   RTIGIDPGTARMGWGIVEETGGTVSLVDCGVLTTPAGVSQASRLLQLYNDLCSLIARYHP 64

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
             AA+E++F  K+    L +GQAR IA+L+ A A IPV EY P  +K+A+ G G  DK+Q
Sbjct: 65  AAAAIEELFFGKNVNTALNVGQARGIALLAFAQAGIPVHEYKPLQVKQALAGYGGADKRQ 124

Query: 126 IHMMLKM-LMPESFFKGKDAADALAIAVCHAYHA 158
           +  M+++ L   +  +  DAADA+A+A+CH Y A
Sbjct: 125 VQEMVRLTLRLPTIPRPDDAADAVAVAICHTYAA 158


>gi|239995980|ref|ZP_04716504.1| Holliday junction resolvase [Alteromonas macleodii ATCC 27126]
          Length = 172

 Score =  112 bits (281), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 67/157 (42%), Positives = 102/157 (64%), Gaps = 7/157 (4%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVR---QSLAFRLCQLYEGLTDVIKNW 63
           I+GIDPG R TG+G++      L +V+SG    C+R     L  RL  ++ G+ D+I+ +
Sbjct: 3   ILGIDPGSRITGYGLIARKQGKLVYVASG----CIRVGTADLPSRLANIFTGVGDIIRQY 58

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +P++ A+EQVF+ K+  + LKLGQAR  AI++   A++PV+EY+   IK++V+G G  DK
Sbjct: 59  KPDQFAIEQVFMAKNPDSALKLGQARGAAIVAATQAQLPVAEYSARQIKQSVVGKGGADK 118

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
            Q+  M+K L+  S     DAADALA+A+CHA+   S
Sbjct: 119 TQVQHMVKHLLNLSGTPQADAADALAVALCHAHTEQS 155


>gi|77163676|ref|YP_342201.1| crossover junction endodeoxyribonuclease RuvC [Nitrosococcus oceani
           ATCC 19707]
 gi|254435564|ref|ZP_05049071.1| crossover junction endodeoxyribonuclease RuvC [Nitrosococcus oceani
           AFC27]
 gi|97274860|sp|Q3JES5|RUVC_NITOC RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|76881990|gb|ABA56671.1| Holliday junction endonuclease RuvC [Nitrosococcus oceani ATCC
           19707]
 gi|207088675|gb|EDZ65947.1| crossover junction endodeoxyribonuclease RuvC [Nitrosococcus oceani
           AFC27]
          Length = 174

 Score =  112 bits (280), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 53/132 (40%), Positives = 88/132 (66%), Gaps = 7/132 (5%)

Query: 6   RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQ---SLAFRLCQLYEGLTDVIKN 62
           RI+GIDPG R TG+G+++       ++++G    C+R     LA RL Q+++G+T +I+ 
Sbjct: 3   RILGIDPGSRITGYGLIETNNKKTVYIAAG----CIRAGEGGLAERLGQIFQGITGIIQA 58

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
           + P+E AVEQVF++++  + LKLGQAR  AI +   A +P+ EY P+ +K+AV+G G   
Sbjct: 59  YHPDEVAVEQVFMHQNPGSALKLGQARGAAICAAVNAVLPIFEYTPSQVKQAVVGRGDAA 118

Query: 123 KKQIHMMLKMLM 134
           K Q+  M+++L+
Sbjct: 119 KSQVQYMIRLLL 130


>gi|89075785|ref|ZP_01162173.1| Holliday junction resolvase [Photobacterium sp. SKA34]
 gi|89048517|gb|EAR54092.1| Holliday junction resolvase [Photobacterium sp. SKA34]
          Length = 173

 Score =  112 bits (279), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/153 (45%), Positives = 102/153 (66%), Gaps = 7/153 (4%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQS---LAFRLCQLYEGLTDVIKNW 63
           I+GIDPG R TG+G++   G NL ++ SG    C+R S   +  RL Q+Y G+++VI  +
Sbjct: 4   ILGIDPGSRITGYGVIRQVGRNLEYLGSG----CIRTSEPGIPGRLKQIYAGVSEVITQF 59

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +P+  A+E+VF+ K+A A +KLGQAR  AI++   A +PVSEYA   IK+AV+G G  DK
Sbjct: 60  QPDFFAIEEVFMGKNASAAIKLGQARGSAIVAAVNADLPVSEYAARLIKQAVVGNGGADK 119

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
            Q+  M+  ++  +     DAADALA+A+CHA+
Sbjct: 120 AQVQHMVCSVLKLAGKPQADAADALAVAICHAH 152


>gi|255020123|ref|ZP_05292193.1| Crossover junction endodeoxyribonuclease ruvC [Acidithiobacillus
           caldus ATCC 51756]
 gi|254970416|gb|EET27908.1| Crossover junction endodeoxyribonuclease ruvC [Acidithiobacillus
           caldus ATCC 51756]
          Length = 166

 Score =  112 bits (279), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/157 (44%), Positives = 102/157 (64%), Gaps = 2/157 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAG-DNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +RIIGIDPG  RTG+G+++V G   L  V  G ++   R  L  R+  ++ GL +V+  +
Sbjct: 1   MRIIGIDPGSLRTGYGVIEVDGRGRLRSVGYGCLMVAGRPFLE-RIGAIHAGLLEVLAEF 59

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RP+EAA+E VF+ ++A + LKLGQAR  A+++     +PV EY    IKKA +G GH  K
Sbjct: 60  RPDEAAIEAVFMARNADSALKLGQARGAALVALLQEGLPVHEYTALQIKKAAVGGGHAAK 119

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           +Q+  M+++L+  S     DAADALA AVCHA+HA +
Sbjct: 120 EQVQHMVRILLSLSEAPQADAADALACAVCHAHHAGT 156


>gi|89895214|ref|YP_518701.1| hypothetical protein DSY2468 [Desulfitobacterium hafniense Y51]
 gi|219669645|ref|YP_002460080.1| Holliday junction resolvase [Desulfitobacterium hafniense DCB-2]
 gi|123397711|sp|Q24UN5|RUVC_DESHY RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|254767469|sp|B8FQV7|RUVC_DESHD RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|89334662|dbj|BAE84257.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219539905|gb|ACL21644.1| crossover junction endodeoxyribonuclease RuvC [Desulfitobacterium
           hafniense DCB-2]
          Length = 165

 Score =  112 bits (279), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 58/154 (37%), Positives = 87/154 (56%), Gaps = 1/154 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG    G+G+++  G+ L  V      +     +  RL  LY  +   IK  +P 
Sbjct: 3   ILGIDPGTAIMGYGLIEKKGNRLFPVDYACWRTPAHTPMPERLLMLYHEIEAYIKEKQPH 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             AVE++F N++    + +GQAR + +L+ A   +PV EY P  +K+AV G G  DK+QI
Sbjct: 63  HVAVEELFFNRNTTTAISVGQARGVVLLAAAQCGLPVYEYTPLQVKQAVAGYGRADKQQI 122

Query: 127 HMMLKMLMP-ESFFKGKDAADALAIAVCHAYHAN 159
             M++ L+  +   K  D ADALAIA+CHA+  N
Sbjct: 123 QQMVRALLGLQEIPKPDDTADALAIAICHAHSVN 156


>gi|299144014|ref|ZP_07037094.1| crossover junction endodeoxyribonuclease RuvC [Peptoniphilus sp.
           oral taxon 386 str. F0131]
 gi|298518499|gb|EFI42238.1| crossover junction endodeoxyribonuclease RuvC [Peptoniphilus sp.
           oral taxon 386 str. F0131]
          Length = 164

 Score =  112 bits (279), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 56/150 (37%), Positives = 88/150 (58%), Gaps = 1/150 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG    G+GI++V G+    +  G I +  + S   RL ++Y  L D++K ++P+
Sbjct: 3   ILGIDPGFAIVGYGIIEVVGNKYKVLDYGAITTDSKMSFPLRLEKIYLKLEDLVKKYKPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           + A E++F NK+A   + +  AR + IL   L    + EY P  IK+A+ G G  +KKQI
Sbjct: 63  DIAFEELFFNKNAKTAMAVSHARGVMILCGKLNHKELFEYTPLQIKQAIAGYGRAEKKQI 122

Query: 127 HMMLKMLMP-ESFFKGKDAADALAIAVCHA 155
             M+K ++  +   K  D ADALA+A+ HA
Sbjct: 123 QEMVKFILKLKETPKPDDVADALAVAITHA 152


>gi|255319284|ref|ZP_05360501.1| crossover junction endodeoxyribonuclease RuvC [Acinetobacter
           radioresistens SK82]
 gi|262379731|ref|ZP_06072887.1| crossover junction endodeoxyribonuclease RuvC [Acinetobacter
           radioresistens SH164]
 gi|255303677|gb|EET82877.1| crossover junction endodeoxyribonuclease RuvC [Acinetobacter
           radioresistens SK82]
 gi|262299188|gb|EEY87101.1| crossover junction endodeoxyribonuclease RuvC [Acinetobacter
           radioresistens SH164]
          Length = 181

 Score =  112 bits (279), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/160 (44%), Positives = 101/160 (63%), Gaps = 2/160 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           IIGIDPG R TG+GI++  G+ L F+ +GTI     Q +  RL +++ G+  ++K   P 
Sbjct: 4   IIGIDPGSRLTGYGIIEKEGNKLRFIDAGTI-RTESQDMPERLKRIFAGIERIVKFHGPT 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           EAAVEQVF+ ++  + LKLGQAR  AI +     + V+EY    IK++V+G G  DK+Q+
Sbjct: 63  EAAVEQVFMAQNPDSALKLGQARGAAIAALVNLDLQVAEYTARQIKQSVVGYGAADKEQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
            MM+  L+  S     DAADALA A+CHA HA+    K+A
Sbjct: 123 QMMVMKLLNLSIRPQADAADALAAAICHA-HASGSMSKLA 161


>gi|147669065|ref|YP_001213883.1| crossover junction endodeoxyribonuclease RuvC [Dehalococcoides sp.
           BAV1]
 gi|189046064|sp|A5FS25|RUVC_DEHSB RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|146270013|gb|ABQ17005.1| crossover junction endodeoxyribonuclease RuvC [Dehalococcoides sp.
           BAV1]
          Length = 167

 Score =  111 bits (278), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 64/165 (38%), Positives = 102/165 (61%), Gaps = 3/165 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPG    G+GI++ A D L  V   ++       +  RL  +Y+GL +VI+ ++
Sbjct: 1   MRILGIDPGTLVVGYGIIETANDELTLVGFSSLTPPACAPIPQRLAYIYKGLVEVIELYQ 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+E AVE  F +K+  + L +G+A+A+A+L+ A   +PV+EY+P  IK  V G G+  K+
Sbjct: 61  PDEVAVESPFADKNIKSALAIGKAQAVALLAAANHSLPVTEYSPACIKSRVAGSGNASKE 120

Query: 125 QIHMMLKMLMP-ESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
           QI  M+++L+      +  DAADALA+A+CH  H+   +  I SQ
Sbjct: 121 QIQEMVRLLLNLAEIPQPNDAADALAVAICH--HSQRAFTNIISQ 163


>gi|149910566|ref|ZP_01899205.1| Holliday junction resolvase [Moritella sp. PE36]
 gi|149806409|gb|EDM66382.1| Holliday junction resolvase [Moritella sp. PE36]
          Length = 173

 Score =  111 bits (278), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 61/152 (40%), Positives = 92/152 (60%), Gaps = 7/152 (4%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQS---LAFRLCQLYEGLTDVIKNW 63
           I+GIDPG R TG+G++        ++ SG    C+R S   L  RL Q++ G+ ++I  +
Sbjct: 4   ILGIDPGSRITGYGVIQHIHGKFQYLGSG----CIRTSGDTLPERLKQIHAGVCEIIIQF 59

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +P++ A+E VF+ K+A + LKLGQAR  AI++     + V EY    IK+AV+G G  DK
Sbjct: 60  QPDKFAIEDVFMGKNAASALKLGQARGAAIVAAVSNDLEVGEYTARQIKQAVVGNGGADK 119

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHA 155
           +Q+  M+  L+        DAAD LA+A+CHA
Sbjct: 120 EQVQQMVVNLLKLPGTPQADAADGLAVALCHA 151


>gi|291530843|emb|CBK96428.1| crossover junction endodeoxyribonuclease RuvC [Eubacterium siraeum
           70/3]
          Length = 167

 Score =  111 bits (278), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 55/157 (35%), Positives = 88/157 (56%), Gaps = 1/157 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RIIGIDPG    G+G+VD  G        G I +        RLC++YE    ++ +W+
Sbjct: 1   MRIIGIDPGYAIVGFGVVDYIGGKFSVKDFGAITTDKDTPFPKRLCEIYEDYCQILDSWK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  ++E+++   +    + + QAR I I++ A   I ++EY P  +K+AV+G G  +KK
Sbjct: 61  PDALSIERLYFTNNQKTGIDVAQARGIIIMAAAQRGIEINEYTPLQVKQAVVGYGQAEKK 120

Query: 125 QIHMMLKMLMPESFF-KGKDAADALAIAVCHAYHANS 160
           Q+  M K ++  S   K  D ADALA+ +CHA  + S
Sbjct: 121 QVQEMTKNILKLSCVPKPDDTADALAMTICHAQTSGS 157


>gi|158320756|ref|YP_001513263.1| crossover junction endodeoxyribonuclease RuvC [Alkaliphilus
           oremlandii OhILAs]
 gi|167012675|sp|A8MHI5|RUVC_ALKOO RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|158140955|gb|ABW19267.1| crossover junction endodeoxyribonuclease RuvC [Alkaliphilus
           oremlandii OhILAs]
          Length = 164

 Score =  111 bits (278), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 57/154 (37%), Positives = 86/154 (55%), Gaps = 1/154 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPGL   G+GI++  G+    +  G I +    +   RL  +Y  L  +I  + P+
Sbjct: 3   ILGIDPGLAILGYGIINYEGNRFKVLDYGAITTPSTMATPERLKTIYRELDRIITEYNPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+E++F N +    L +G AR +A+LS A     + EY P  +K+ V+G G  DK QI
Sbjct: 63  TVAIEELFFNTNVKTALLVGHARGVAVLSAANHNKEIFEYTPLQVKQGVVGYGRADKSQI 122

Query: 127 HMMLKMLMPESFF-KGKDAADALAIAVCHAYHAN 159
             M+K L+  +   K  D ADALA+A+CHA+  N
Sbjct: 123 QQMVKTLLNLTKVPKPDDVADALAVAICHAHTGN 156


>gi|312897338|ref|ZP_07756764.1| crossover junction endodeoxyribonuclease RuvC [Megasphaera
           micronuciformis F0359]
 gi|310621556|gb|EFQ05090.1| crossover junction endodeoxyribonuclease RuvC [Megasphaera
           micronuciformis F0359]
          Length = 166

 Score =  111 bits (278), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 60/157 (38%), Positives = 93/157 (59%), Gaps = 1/157 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R +GIDPG    G+G+VD  G  L  V+ GTI +   +S A RL  +YEGL ++ + ++
Sbjct: 1   MRAMGIDPGTAICGFGVVDSDGSRLRPVTYGTIQTTPDRSDADRLVTIYEGLHELYEKYK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+   VEQ+F N++    + +GQAR I +L+   A IP+ E+ P  +K+ V G G   K+
Sbjct: 61  PDIIGVEQLFFNRNVTTAITVGQARGIILLTAKQAGIPLLEFNPLQVKQGVTGYGRATKE 120

Query: 125 Q-IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           Q I M +++L      K  DAAD LA+A+   Y ++S
Sbjct: 121 QVIDMTMRLLGIREKIKPDDAADGLAMAIYAVYSSHS 157


>gi|332978500|gb|EGK15211.1| crossover junction endoribonuclease subunit C [Psychrobacter sp.
           1501(2011)]
          Length = 194

 Score =  111 bits (278), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 64/159 (40%), Positives = 96/159 (60%), Gaps = 6/159 (3%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK----- 61
           IIGIDPG R TG+GI+   GD L ++ +GTI +  ++ +  RL +++ G+T + +     
Sbjct: 4   IIGIDPGSRMTGYGIIHQKGDTLRYLDAGTIRTDTKE-MPERLKRIFNGITRITEYHLKY 62

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
           +  P  AAVEQVF+ ++  + LKLGQAR  AI +     + VSEY    IK+AV G G  
Sbjct: 63  SDEPIHAAVEQVFMAENPDSALKLGQARGAAIAALVALDLEVSEYTARQIKQAVCGYGAA 122

Query: 122 DKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           DK Q+  M+  ++       +DAAD LA A+CHA+ ++S
Sbjct: 123 DKIQVQEMVCRILKLDVTPQQDAADGLACAICHAHSSHS 161


>gi|262375407|ref|ZP_06068640.1| crossover junction endodeoxyribonuclease RuvC [Acinetobacter
           lwoffii SH145]
 gi|262309661|gb|EEY90791.1| crossover junction endodeoxyribonuclease RuvC [Acinetobacter
           lwoffii SH145]
          Length = 181

 Score =  111 bits (278), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 69/160 (43%), Positives = 103/160 (64%), Gaps = 2/160 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           IIGIDPG R TG+GI++  G  L FV +GTI +   + +  RL +++ G+  ++K + P 
Sbjct: 4   IIGIDPGSRLTGYGIIEKDGSKLTFVDAGTIRTETTE-MPERLKRIFAGVERIVKFYGPT 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           EAAVEQVF+ ++  + LKLGQAR  A+ +     + V+EY    IK++V+G G  DK+Q+
Sbjct: 63  EAAVEQVFMAQNPDSALKLGQARGAAVAALVNLDLKVAEYTARQIKQSVVGYGAADKEQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
            MM+  ++  S    +DAADALA A+CHA HA+    K+A
Sbjct: 123 QMMVMNILKLSIKPQQDAADALAAAICHA-HASGSMSKMA 161


>gi|289432334|ref|YP_003462207.1| crossover junction endodeoxyribonuclease RuvC [Dehalococcoides sp.
           GT]
 gi|288946054|gb|ADC73751.1| crossover junction endodeoxyribonuclease RuvC [Dehalococcoides sp.
           GT]
          Length = 167

 Score =  111 bits (278), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 64/165 (38%), Positives = 102/165 (61%), Gaps = 3/165 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPG    G+GI++ A D L  V   ++       +  RL  +Y+GL +VI+ ++
Sbjct: 1   MRILGIDPGTLVVGYGIIEAANDELTLVGFSSLTPPACAPIPQRLAYIYKGLVEVIELYQ 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+E AVE  F +K+  + L +G+A+A+A+L+ A   +PV+EY+P  IK  V G G+  K+
Sbjct: 61  PDEVAVESPFADKNIKSALAIGKAQAVALLAAANHSLPVTEYSPACIKSRVAGSGNASKE 120

Query: 125 QIHMMLKMLMP-ESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
           QI  M+++L+      +  DAADALA+A+CH  H+   +  I SQ
Sbjct: 121 QIQEMVRLLLNLAEIPQPNDAADALAVAICH--HSERAFTNIISQ 163


>gi|206889628|ref|YP_002248503.1| crossover junction endodeoxyribonuclease RuvC [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|226698768|sp|B5YJT8|RUVC_THEYD RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|206741566|gb|ACI20623.1| crossover junction endodeoxyribonuclease RuvC [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 156

 Score =  111 bits (278), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 61/150 (40%), Positives = 85/150 (56%), Gaps = 2/150 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + +IGIDPG R  G+GIVD     +  + + TI      SL +RL  +YE L  +++ + 
Sbjct: 1   MTVIGIDPGSRHFGYGIVD--AKQMKLIHANTINLSHDISLPYRLKSIYEILLSMVEKYS 58

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+E AVE++FV K   ++  LG ARAIA L  A   IPV EY+   IKKA+ G G   K 
Sbjct: 59  PDEMAVEKIFVGKKITSSFVLGYARAIAFLVAAQKEIPVYEYSSTEIKKALTGYGRAHKV 118

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCH 154
           Q+  M+   +        D ADALA+A+CH
Sbjct: 119 QVKSMVYNFLHIDKKISYDCADALAVAICH 148


>gi|73748285|ref|YP_307524.1| crossover junction endodeoxyribonuclease RuvC [Dehalococcoides sp.
           CBDB1]
 gi|110287672|sp|Q3ZZK5|RUVC_DEHSC RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|73660001|emb|CAI82608.1| crossover junction endodeoxyribonuclease RuvC [Dehalococcoides sp.
           CBDB1]
          Length = 167

 Score =  111 bits (278), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 64/165 (38%), Positives = 102/165 (61%), Gaps = 3/165 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPG    G+GI++ A D L  V   ++       +  RL  +Y+GL +VI+ ++
Sbjct: 1   MRILGIDPGTLVVGYGIIEAANDELTLVGFSSLTPPACAPIPQRLAYIYKGLVEVIELYQ 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+E AVE  F +K+  + L +G+A+A+A+L+ A   +PV+EY+P  IK  V G G+  K+
Sbjct: 61  PDEVAVESPFADKNIKSALAIGKAQAVALLAAANHSLPVTEYSPACIKSRVAGSGNASKE 120

Query: 125 QIHMMLKMLMP-ESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
           QI  M+++L+      +  DAADALA+A+CH  H+   +  I SQ
Sbjct: 121 QIQEMVRLLLNLAEIPQPNDAADALAVAICH--HSQRAFTNIISQ 163


>gi|124010040|ref|ZP_01694702.1| crossover junction endodeoxyribonuclease RuvC [Microscilla marina
           ATCC 23134]
 gi|123983927|gb|EAY24322.1| crossover junction endodeoxyribonuclease RuvC [Microscilla marina
           ATCC 23134]
          Length = 188

 Score =  111 bits (278), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 54/157 (34%), Positives = 97/157 (61%), Gaps = 2/157 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           IIGIDPG +  G+G++ V G  +  V  G I      + A +L +++E ++ +++ + P+
Sbjct: 10  IIGIDPGTQLMGYGLILVKGKKVSVVQYGVIHLAKYSNHALKLKKIFERVSQLVEEYLPD 69

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E  F+ K+  A LKLG+A+ +A+ +  + +IP++EYAP  +K++V G G+  K+Q+
Sbjct: 70  EMALEAPFMGKNVQAALKLGRAQGVAMSAALVRQIPIAEYAPRKVKQSVTGSGNASKEQV 129

Query: 127 HMMLKMLMPESFFKGK--DAADALAIAVCHAYHANSG 161
             ML+  +  +F +    DA+DAL +A+CH +    G
Sbjct: 130 ARMLEKQLNFTFHENDTLDASDALGVALCHYFQGKLG 166


>gi|282164970|ref|YP_003357355.1| crossover junction endodeoxyribonuclease RuvC [Methanocella
           paludicola SANAE]
 gi|282157284|dbj|BAI62372.1| crossover junction endodeoxyribonuclease RuvC [Methanocella
           paludicola SANAE]
          Length = 166

 Score =  111 bits (278), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 61/152 (40%), Positives = 90/152 (59%), Gaps = 1/152 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPG+  TG+GIV+  G  +     G I +     +  RL  LY+ + ++++ +R
Sbjct: 1   MRILGIDPGIALTGFGIVEKEGVRIKAGRYGHISTESGTPVPDRLKILYDDMVNIVQEYR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           PE   VE++F NK+A   +   QAR + ILS     + V EY P  +K+AVIG G   K+
Sbjct: 61  PEVMVVEELFFNKNAKTAIIAAQARGVIILSAVNNGVKVEEYTPLQVKQAVIGYGRASKQ 120

Query: 125 QIHMMLKMLMP-ESFFKGKDAADALAIAVCHA 155
           Q+  M+K L+  +   K  D ADALAIA+CHA
Sbjct: 121 QVQFMVKELLRLKEIPKPDDTADALAIAICHA 152


>gi|304317017|ref|YP_003852162.1| crossover junction endodeoxyribonuclease RuvC
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302778519|gb|ADL69078.1| crossover junction endodeoxyribonuclease RuvC
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 165

 Score =  111 bits (277), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 57/151 (37%), Positives = 92/151 (60%), Gaps = 1/151 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RIIGIDPG+   G+GI+D        +  G I + V    + RL ++Y+G   +I+ +R
Sbjct: 1   MRIIGIDPGIAIMGYGIIDDDCGKFKVLEYGAITTRVGIKKSIRLKEIYDGTILLIEKYR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  A+E++F NK+A   + +G++R +AIL+     I V EY P  +K++V+G G  +KK
Sbjct: 61  PDVMAIEELFFNKNAKTVITIGESRGVAILAAVNCGIDVFEYTPLQVKQSVVGYGRAEKK 120

Query: 125 QIHMMLKMLMP-ESFFKGKDAADALAIAVCH 154
           Q+  M+K ++      K  D ADALA+A+CH
Sbjct: 121 QVQNMVKAILGLNEIPKPDDVADALAVALCH 151


>gi|210622014|ref|ZP_03292957.1| hypothetical protein CLOHIR_00903 [Clostridium hiranonis DSM 13275]
 gi|210154459|gb|EEA85465.1| hypothetical protein CLOHIR_00903 [Clostridium hiranonis DSM 13275]
          Length = 167

 Score =  111 bits (277), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 56/154 (36%), Positives = 89/154 (57%), Gaps = 2/154 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG+   G+G+++  G+N   +  G I +     L  RL  +Y+G+  +IK++  +
Sbjct: 3   ILGIDPGIAIVGYGVIEYKGNNFRVIDYGAITTPAHTDLTTRLEMVYKGVDTIIKSYDID 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E  +E++F NK+    + + QAR + +L+ A   +P+ EY P  IK+ V G G  DK ++
Sbjct: 63  EVGIEELFFNKNVKTAITVAQARGVTLLACAHNNVPIYEYTPPQIKQGVCGYGRADKVRV 122

Query: 127 HM-MLKMLMPESFFKGKDAADALAIAVCHAYHAN 159
              +   L  +   K  D ADALAIA+CHA HAN
Sbjct: 123 QKSVTSFLKLKKVPKPDDVADALAIAICHA-HAN 155


>gi|282601163|ref|ZP_05980968.2| crossover junction endodeoxyribonuclease RuvC [Subdoligranulum
           variabile DSM 15176]
 gi|282570075|gb|EFB75610.1| crossover junction endodeoxyribonuclease RuvC [Subdoligranulum
           variabile DSM 15176]
          Length = 194

 Score =  111 bits (277), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 91/159 (57%), Gaps = 1/159 (0%)

Query: 3   KSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
           + +R++GIDPG    GWG+V+  G+    +  G I++        RLC++Y+ + DV + 
Sbjct: 28  RKLRVLGIDPGYAIVGWGVVEYVGNRFSPIGYGAILTEKDTPFEQRLCEIYDSVLDVCRR 87

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
           + PE  ++E+++   +    + + +AR + +L+ A   +P+ EY P  +K+A+ G G   
Sbjct: 88  YAPEALSIEKLYYQHNQTTVIGVAEARGVILLAAAQCGVPIYEYTPMQVKQAITGYGKAV 147

Query: 123 KKQIHMMLKMLMP-ESFFKGKDAADALAIAVCHAYHANS 160
           KKQI  M +M++  E+  K  D ADAL +A+ H + + S
Sbjct: 148 KKQIQEMTRMMLHLETIPKPDDTADALGMAIAHCHCSRS 186


>gi|226945720|ref|YP_002800793.1| Holliday junction resolvase [Azotobacter vinelandii DJ]
 gi|259495683|sp|C1DRG0|RUVC_AZOVD RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|226720647|gb|ACO79818.1| crossover junction endodeoxyribonuclease RuvC [Azotobacter
           vinelandii DJ]
          Length = 174

 Score =  111 bits (277), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 66/157 (42%), Positives = 100/157 (63%), Gaps = 7/157 (4%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQ---SLAFRLCQLYEGLTDVIKNW 63
           I+GIDPG R TG+G+V   G    +++SG    C+R    SL  RL  +Y G+T++I++ 
Sbjct: 4   ILGIDPGSRITGFGVVRDGGRGCEYIASG----CIRTGSGSLPERLQAVYRGVTEIIRSH 59

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P    +EQVF+ ++A + LKLGQAR  AI++ A A + ++EY    +K+A++G G  DK
Sbjct: 60  GPVTMGIEQVFMARNADSALKLGQARGAAIVAAAEAGLEIAEYTATQVKQAIVGSGGADK 119

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           +Q+ MM+  L+        DA+DALAIA+CHA+H  S
Sbjct: 120 RQVQMMVMHLLRLVQKPQIDASDALAIALCHAHHRQS 156


>gi|332799126|ref|YP_004460625.1| Crossover junction endodeoxyribonuclease ruvC [Tepidanaerobacter
           sp. Re1]
 gi|332696861|gb|AEE91318.1| Crossover junction endodeoxyribonuclease ruvC [Tepidanaerobacter
           sp. Re1]
          Length = 166

 Score =  111 bits (277), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 49/125 (39%), Positives = 84/125 (67%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+G+DPG+  +G+GI+     N   V  G I +  + ++ +RL Q++EG  ++I+ ++P+
Sbjct: 3   IMGVDPGIAISGYGIISNEQSNCYVVEYGVIRTPPKLAMPYRLKQIHEGYIELIQKYKPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             AVE++F NK+A   + +GQAR +A+L+ AL++I V EY P  +K+AV+G G  DK+Q+
Sbjct: 63  VVAVEELFFNKNAKTIISVGQARGVAVLAAALSKIEVFEYTPLQVKQAVVGYGRADKQQV 122

Query: 127 HMMLK 131
             M+K
Sbjct: 123 QQMIK 127


>gi|292490334|ref|YP_003525773.1| crossover junction endodeoxyribonuclease RuvC [Nitrosococcus
           halophilus Nc4]
 gi|291578929|gb|ADE13386.1| crossover junction endodeoxyribonuclease RuvC [Nitrosococcus
           halophilus Nc4]
          Length = 174

 Score =  111 bits (277), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 52/130 (40%), Positives = 88/130 (67%), Gaps = 1/130 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPG R TG+G+++  G    ++++G I +     LA RL ++++G+T +I+++ 
Sbjct: 2   VRILGIDPGSRITGYGLIETNGKEAAYITAGCIQAG-NGELAERLGRIFKGITAIIEDYH 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+E AVEQVF++++  A LKLG AR  AI +     +PV EY P+ +K+AV+G G   K 
Sbjct: 61  PDEVAVEQVFMHQNPGAALKLGHARGAAICAAMNVVLPVFEYTPSQVKQAVVGRGDAAKS 120

Query: 125 QIHMMLKMLM 134
           Q+  M+++L+
Sbjct: 121 QVQYMIRLLL 130


>gi|167627793|ref|YP_001678293.1| Holliday junction resolvase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|189046067|sp|B0TZD9|RUVC_FRAP2 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|167597794|gb|ABZ87792.1| Crossover junction endodeoxyribonuclease [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
          Length = 171

 Score =  111 bits (277), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 69/163 (42%), Positives = 107/163 (65%), Gaps = 8/163 (4%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVR---QSLAFRLCQLYEGLTDVIKNW 63
           I+GIDPG R TG+GI+ +  + L +V+SG    C+R      A RL Q+ +G+T+V+  +
Sbjct: 3   ILGIDPGSRITGFGIIKIHDNKLYYVASG----CIRITETGTARRLKQIADGITEVVNTY 58

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P E+A+EQ+F+ ++  A LKLGQAR +A+ + A+  + VSEY+   IK+AV+G G   K
Sbjct: 59  APTESAIEQIFMFQNPGAALKLGQARGVAMCTLAINNLEVSEYSAKQIKQAVVGTGGAAK 118

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
            Q+  M++ ++  S    +DAADALAIA+CH YH++    +IA
Sbjct: 119 SQVQHMVQSILGLSKKPPEDAADALAIAICH-YHSSKSLARIA 160


>gi|90580115|ref|ZP_01235923.1| Holliday junction resolvase [Vibrio angustum S14]
 gi|90439000|gb|EAS64183.1| Holliday junction resolvase [Vibrio angustum S14]
          Length = 173

 Score =  110 bits (276), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 68/153 (44%), Positives = 102/153 (66%), Gaps = 7/153 (4%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQS---LAFRLCQLYEGLTDVIKNW 63
           I+GIDPG R TG+G++   G NL ++ SG    C+R S   +  RL Q+Y G+++VI  +
Sbjct: 4   ILGIDPGSRITGYGVIRQVGRNLEYLGSG----CIRTSEPGIPGRLKQIYAGVSEVITQF 59

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +P+  A+E+VF+ K+A + +KLGQAR  AI++   A +PVSEYA   IK+AV+G G  DK
Sbjct: 60  QPDFFAIEEVFMGKNASSAIKLGQARGSAIVAAVNADLPVSEYAARLIKQAVVGNGGADK 119

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
            Q+  M+  ++  +     DAADALA+A+CHA+
Sbjct: 120 AQVQHMVCSVLKLAGKPQADAADALAVAICHAH 152


>gi|226954181|ref|ZP_03824645.1| Holliday junction nuclease [Acinetobacter sp. ATCC 27244]
 gi|294650205|ref|ZP_06727579.1| crossover junction endoribonuclease subunit C [Acinetobacter
           haemolyticus ATCC 19194]
 gi|226835050|gb|EEH67433.1| Holliday junction nuclease [Acinetobacter sp. ATCC 27244]
 gi|292823911|gb|EFF82740.1| crossover junction endoribonuclease subunit C [Acinetobacter
           haemolyticus ATCC 19194]
          Length = 181

 Score =  110 bits (276), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 71/160 (44%), Positives = 102/160 (63%), Gaps = 2/160 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           IIGIDPG R TG+GI++  G+ L FV +GTI +   Q +  RL +++ G+  ++K   P 
Sbjct: 4   IIGIDPGSRLTGYGIIEKDGNKLRFVDAGTIRTET-QEMPERLKRIFAGVERIVKFHGPT 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           EAAVEQVF+ ++  + LKLGQAR  AI +     + V+EY    IK++V+G G  DK+Q+
Sbjct: 63  EAAVEQVFMAQNPDSALKLGQARGAAIAALVNLDLQVAEYTARQIKQSVVGYGAADKEQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
            MM+  L+  +     DAADALA A+CHA HA+    K+A
Sbjct: 123 QMMVMRLLNLTIKPQADAADALAAAICHA-HASGSMTKLA 161


>gi|152986043|ref|YP_001349892.1| Holliday junction resolvase [Pseudomonas aeruginosa PA7]
 gi|166233285|sp|A6VA07|RUVC_PSEA7 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|150961201|gb|ABR83226.1| crossover junction endodeoxyribonuclease RuvC [Pseudomonas
           aeruginosa PA7]
          Length = 174

 Score =  110 bits (276), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 62/157 (39%), Positives = 95/157 (60%), Gaps = 7/157 (4%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQS---LAFRLCQLYEGLTDVIKNW 63
           I+GIDPG R TG+G+V        +V+SG    C+R     L  RL  ++  + +VI+  
Sbjct: 4   ILGIDPGSRITGFGVVRETARGCEYVASG----CIRTGNGPLHERLQVVFRSVREVIRTH 59

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P   ++EQVF+ ++A + LKLGQAR  AI++     + V+EY  + +K+AV+G G  DK
Sbjct: 60  GPTTLSIEQVFMARNADSALKLGQARGAAIVAAMEEGLSVAEYTASQVKQAVVGTGGADK 119

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           +Q+ MM+  L+  +     DA+DALAIA+CHA+   S
Sbjct: 120 QQVQMMVMHLLKLTQKPQIDASDALAIALCHAHTQQS 156


>gi|218961234|ref|YP_001741009.1| crossover junction endodeoxyribonuclease RuvC [Candidatus
           Cloacamonas acidaminovorans]
 gi|167729891|emb|CAO80803.1| crossover junction endodeoxyribonuclease RuvC [Candidatus
           Cloacamonas acidaminovorans]
          Length = 159

 Score =  110 bits (276), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 56/149 (37%), Positives = 85/149 (57%), Gaps = 1/149 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           IIG DPG R  G+G++ +    +       I     ++LA RL  LYE +  +++ + PE
Sbjct: 3   IIGFDPGSRYCGYGLLQIESRKVLAAGCDVIDVTRGKTLALRLKSLYENIMQILEEYHPE 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
            AAVE +F ++   +   LG +R + +L+ A+  IPV EY+P  IKK+V G G+  K+Q+
Sbjct: 63  IAAVESIFFHRQVRSIFTLGHSRGVILLALAMQEIPVVEYSPREIKKSVCGNGNASKQQV 122

Query: 127 HMMLKMLMP-ESFFKGKDAADALAIAVCH 154
             M+  L P +   K  DA DALA+A CH
Sbjct: 123 RYMINQLYPLKESPKRDDAFDALAVATCH 151


>gi|290475276|ref|YP_003468164.1| Holliday junction nuclease [Xenorhabdus bovienii SS-2004]
 gi|289174597|emb|CBJ81391.1| Holliday junction nuclease [Xenorhabdus bovienii SS-2004]
          Length = 173

 Score =  110 bits (276), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 55/131 (41%), Positives = 86/131 (65%), Gaps = 1/131 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I + V   L  RL ++Y G+T++I  +RP+
Sbjct: 4   ILGIDPGSRVTGYGVIRQQGRQLIYIGSGCIRTKV-DDLPNRLQRIYAGITEIIIQFRPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQ+F+ K+A + LKLGQAR +AI++ A   IPV EYA   +K+ V+G G  +K Q+
Sbjct: 63  VFAIEQIFMAKNADSALKLGQARGVAIVAAANESIPVFEYAARQVKQTVVGTGAAEKSQV 122

Query: 127 HMMLKMLMPES 137
             M++ ++  S
Sbjct: 123 QHMVRSMLKLS 133


>gi|198282209|ref|YP_002218530.1| Holliday junction resolvase [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|198246730|gb|ACH82323.1| crossover junction endodeoxyribonuclease RuvC [Acidithiobacillus
           ferrooxidans ATCC 53993]
          Length = 185

 Score =  110 bits (276), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 71/159 (44%), Positives = 101/159 (63%), Gaps = 4/159 (2%)

Query: 4   SIRIIGIDPGLRRTGWGIV--DVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           ++RIIGIDPG  RTG+GI+  D AG+ L  V+ G + +   Q    R+  +Y  L  +I 
Sbjct: 19  AVRIIGIDPGSLRTGYGIIESDAAGE-LRHVAHGCL-NVSGQPFLERIGAIYRELKQIIG 76

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
            + PEEAA+EQVF+ ++A + LKLGQAR  A+++   A +PV EY    IKKA +G GH 
Sbjct: 77  TYHPEEAAIEQVFMARNADSALKLGQARGAALVALLEAGLPVEEYTALQIKKAAVGGGHA 136

Query: 122 DKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
            K+Q+  M++ L+  S     DAADALA A+CHA+H  +
Sbjct: 137 AKEQVQSMVRWLLKLSENPQADAADALACAICHAHHGRT 175


>gi|303241605|ref|ZP_07328104.1| crossover junction endodeoxyribonuclease RuvC [Acetivibrio
           cellulolyticus CD2]
 gi|302590825|gb|EFL60574.1| crossover junction endodeoxyribonuclease RuvC [Acetivibrio
           cellulolyticus CD2]
          Length = 188

 Score =  110 bits (276), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 54/151 (35%), Positives = 87/151 (57%), Gaps = 1/151 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG   TG+G+V   G+    V  G I +        RL  L++ L ++I   +P+
Sbjct: 28  ILGIDPGFAITGYGVVKYEGNKFSVVDYGAITTESSMEFPKRLLYLHDSLKELISRHKPD 87

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             ++E++F NK+    L +G  R +A+L+ A + I V EY P  +K++V+G G  +K Q+
Sbjct: 88  AISIEELFFNKNIKTALTVGHGRGVAVLAAAESGIDVYEYTPLQVKQSVVGYGRAEKAQV 147

Query: 127 HMMLKMLMP-ESFFKGKDAADALAIAVCHAY 156
             M+K+++      K  D ADALAIA+CH +
Sbjct: 148 QQMIKVILNLPKIPKPDDVADALAIAICHGH 178


>gi|227825063|ref|ZP_03989895.1| crossover junction endodeoxyribonuclease ruvC [Acidaminococcus sp.
           D21]
 gi|226905562|gb|EEH91480.1| crossover junction endodeoxyribonuclease ruvC [Acidaminococcus sp.
           D21]
          Length = 165

 Score =  110 bits (276), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 58/147 (39%), Positives = 90/147 (61%), Gaps = 1/147 (0%)

Query: 8   IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEE 67
           +GIDPG    G+G+V +    L  +  G+I++        RL  +YE LT +IK ++P+ 
Sbjct: 4   LGIDPGTAICGYGLVKLERSRLIPIHYGSILTDKDMLPEKRLQIIYEALTGLIKEYKPDF 63

Query: 68  AAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI- 126
            +VE++F N++    + +GQAR + +LS A+A +PV EY P  IK+A+ G G  DKKQ+ 
Sbjct: 64  MSVEKLFFNRNVTTAIAVGQARGVIVLSAAMADLPVYEYTPIQIKQAITGTGRADKKQVT 123

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVC 153
           +M++K+L      K  D ADALAIA+ 
Sbjct: 124 YMVMKLLHLTEEPKPDDTADALAIAIT 150


>gi|120602035|ref|YP_966435.1| Holliday junction resolvase [Desulfovibrio vulgaris DP4]
 gi|166233190|sp|A1VC42|RUVC_DESVV RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|120562264|gb|ABM28008.1| Holliday junction endonuclease RuvC [Desulfovibrio vulgaris DP4]
          Length = 166

 Score =  110 bits (275), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 63/154 (40%), Positives = 87/154 (56%), Gaps = 1/154 (0%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M  S+ +IGIDPG + TGWGIV  A   L  V+ G I        A RL  LY  L DV+
Sbjct: 1   MAASVTVIGIDPGSQCTGWGIVREASGVLTLVNCGAIRP-KGADFAARLGDLYRQLADVV 59

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
           +   P+EAAVE V   ++    LKLGQAR + + + A   +PV +Y P+ IKKA++G G 
Sbjct: 60  RAHTPDEAAVEDVHAAQNVATALKLGQARGVVVAACAAHGVPVIDYRPSVIKKALVGTGR 119

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCH 154
            +K+Q+  M+  ++        D  DALA A+CH
Sbjct: 120 AEKEQVGYMVGQVLGVRPDWKLDTGDALAAAICH 153


>gi|15596162|ref|NP_249656.1| Holliday junction resolvase [Pseudomonas aeruginosa PAO1]
 gi|116048890|ref|YP_792309.1| Holliday junction resolvase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218893064|ref|YP_002441933.1| Holliday junction resolvase [Pseudomonas aeruginosa LESB58]
 gi|254239313|ref|ZP_04932636.1| Holliday junction resolvase RuvC [Pseudomonas aeruginosa C3719]
 gi|254245248|ref|ZP_04938570.1| Holliday junction resolvase RuvC [Pseudomonas aeruginosa 2192]
 gi|2498881|sp|Q51424|RUVC_PSEAE RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|122257997|sp|Q02IC7|RUVC_PSEAB RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|226725475|sp|B7UXW7|RUVC_PSEA8 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|9946872|gb|AAG04354.1|AE004530_7 Holliday junction resolvase RuvC [Pseudomonas aeruginosa PAO1]
 gi|1183840|dbj|BAA11817.1| Holliday junction specific endonuclease [Pseudomonas aeruginosa]
 gi|115584111|gb|ABJ10126.1| Holliday junction resolvase RuvC [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126171244|gb|EAZ56755.1| Holliday junction resolvase RuvC [Pseudomonas aeruginosa C3719]
 gi|126198626|gb|EAZ62689.1| Holliday junction resolvase RuvC [Pseudomonas aeruginosa 2192]
 gi|218773292|emb|CAW29104.1| Holliday junction resolvase RuvC [Pseudomonas aeruginosa LESB58]
          Length = 174

 Score =  110 bits (275), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 62/157 (39%), Positives = 95/157 (60%), Gaps = 7/157 (4%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQS---LAFRLCQLYEGLTDVIKNW 63
           I+GIDPG R TG+G+V        +V+SG    C+R     L  RL  ++  + +VI+  
Sbjct: 4   ILGIDPGSRITGFGVVRETARGCEYVASG----CIRTGNGPLHERLHVVFRSVREVIRTH 59

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P   ++EQVF+ ++A + LKLGQAR  AI++     + V+EY  + +K+AV+G G  DK
Sbjct: 60  GPTALSIEQVFMARNADSALKLGQARGAAIVAAMEEGLSVAEYTASQVKQAVVGTGGADK 119

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           +Q+ MM+  L+  +     DA+DALAIA+CHA+   S
Sbjct: 120 QQVQMMVMHLLKLTQKPQIDASDALAIALCHAHTQQS 156


>gi|255035791|ref|YP_003086412.1| crossover junction endodeoxyribonuclease RuvC [Dyadobacter
           fermentans DSM 18053]
 gi|254948547|gb|ACT93247.1| crossover junction endodeoxyribonuclease RuvC [Dyadobacter
           fermentans DSM 18053]
          Length = 174

 Score =  110 bits (275), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 57/145 (39%), Positives = 93/145 (64%), Gaps = 3/145 (2%)

Query: 18  GWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNK 77
           G+G++ V G  +  V  G I      +   +L +++E LT +I+++ P+E A+E  F  K
Sbjct: 2   GYGVISVKGQQISLVQYGVIHLSKYSTHELKLKKIFERLTQLIEDYLPDEMAIEDPFYGK 61

Query: 78  DAVATLKLGQARAIAILSPALAR-IPVSEYAPNTIKKAVIGVGHGDKKQI-HMMLKMLMP 135
           +A + LKLG+A+ +A ++ ALAR IP+ EY+P  +K++V G G+  K+Q+ +M+ K+L  
Sbjct: 62  NAQSMLKLGRAQGVA-MAAALARNIPIVEYSPKKVKQSVTGSGNASKEQVAYMLEKILKM 120

Query: 136 ESFFKGKDAADALAIAVCHAYHANS 160
           E   +  DA D +AIA+CH YHANS
Sbjct: 121 ELSREFMDATDGIAIAICHQYHANS 145


>gi|59711557|ref|YP_204333.1| Holliday junction resolvase [Vibrio fischeri ES114]
 gi|197336110|ref|YP_002155713.1| crossover junction endodeoxyribonuclease RuvC [Vibrio fischeri
           MJ11]
 gi|71649500|sp|Q5E6A1|RUVC_VIBF1 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|226698769|sp|B5FCQ0|RUVC_VIBFM RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|59479658|gb|AAW85445.1| component of RuvABC resolvasome, endonuclease [Vibrio fischeri
           ES114]
 gi|197317600|gb|ACH67047.1| crossover junction endodeoxyribonuclease RuvC [Vibrio fischeri
           MJ11]
          Length = 173

 Score =  110 bits (275), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 71/154 (46%), Positives = 101/154 (65%), Gaps = 11/154 (7%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQS---LAFRLCQLYEGLTDVIKNW 63
           I+GIDPG R TG+G++   G +L ++ SG    C+R S   L  RL Q+Y G++++I  +
Sbjct: 4   ILGIDPGSRITGYGVIRQNGRHLQYLGSG----CIRMSEKELPGRLKQIYAGVSEIITQF 59

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +P+  A+EQVF++K+A + LKLGQAR  AI++   A +PV EYA   IK+AV G G  DK
Sbjct: 60  QPDVFAIEQVFMSKNADSALKLGQARGSAIVAAVNADLPVYEYAARLIKQAVTGTGGADK 119

Query: 124 KQI-HMMLKML-MPESFFKGKDAADALAIAVCHA 155
            Q+ HM++ ML +P       DAADAL  A+CHA
Sbjct: 120 SQVQHMVMSMLKLPAK--PQADAADALGAAICHA 151


>gi|46580663|ref|YP_011471.1| Holliday junction resolvase [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|81566319|sp|Q729U1|RUVC_DESVH RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|46450082|gb|AAS96731.1| crossover junction endodeoxyribonuclease RuvC [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|311234391|gb|ADP87245.1| crossover junction endodeoxyribonuclease RuvC [Desulfovibrio
           vulgaris RCH1]
          Length = 166

 Score =  110 bits (274), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 63/154 (40%), Positives = 86/154 (55%), Gaps = 1/154 (0%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M  S+ +IGIDPG + TGWGIV  A   L  V  G I        A RL  LY  L DV+
Sbjct: 1   MAASVTVIGIDPGSQCTGWGIVREASGVLTLVDCGAIRP-KGGDFAARLGDLYRQLADVV 59

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
           +   P+EAAVE V   ++    LKLGQAR + + + A   +PV +Y P+ IKKA++G G 
Sbjct: 60  RAHTPDEAAVEDVHAAQNVATALKLGQARGVVVAACAAHGVPVIDYRPSVIKKALVGTGR 119

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCH 154
            +K+Q+  M+  ++        D  DALA A+CH
Sbjct: 120 AEKEQVGYMVGQVLGVRPDWKLDTGDALAAAICH 153


>gi|163846621|ref|YP_001634665.1| Holliday junction resolvase [Chloroflexus aurantiacus J-10-fl]
 gi|222524418|ref|YP_002568889.1| Holliday junction resolvase [Chloroflexus sp. Y-400-fl]
 gi|226698748|sp|A9WIH6|RUVC_CHLAA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|254767466|sp|B9LAL7|RUVC_CHLSY RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|163667910|gb|ABY34276.1| crossover junction endodeoxyribonuclease RuvC [Chloroflexus
           aurantiacus J-10-fl]
 gi|222448297|gb|ACM52563.1| crossover junction endodeoxyribonuclease RuvC [Chloroflexus sp.
           Y-400-fl]
          Length = 164

 Score =  110 bits (274), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 67/157 (42%), Positives = 96/157 (61%), Gaps = 1/157 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R +GIDPG    GWGIV+    +L  +  G + +        RL QLY GL  +I+  R
Sbjct: 1   MRALGIDPGTATMGWGIVEFNNGHLRLIDVGALTTPAGMPHPERLLQLYNGLRAIIERLR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ AAVE++F  K+    L +GQAR +A+L+ A A IPV EY P  +K+AV G G  DK+
Sbjct: 61  PDTAAVEELFFGKNVNTALTVGQARGVALLALAQAGIPVHEYKPLAVKQAVAGYGGADKR 120

Query: 125 QIHMMLKMLMP-ESFFKGKDAADALAIAVCHAYHANS 160
           Q+  M+++ +   +  +  DAADALAIA+CHAY A +
Sbjct: 121 QMQEMVRLTLGLATIPRPDDAADALAIAICHAYTAPT 157


>gi|311694933|gb|ADP97806.1| crossover junction endodeoxyribonuclease RuvC [marine bacterium
           HP15]
          Length = 175

 Score =  110 bits (274), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 66/157 (42%), Positives = 103/157 (65%), Gaps = 7/157 (4%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVR---QSLAFRLCQLYEGLTDVIKNW 63
           I+G+DPG R TG+G++   G ++ ++ SG    C+R   + +A RL  +++ L  +I  +
Sbjct: 4   ILGVDPGSRITGYGVIRADGRHIEYIDSG----CIRVGEKPMAERLQTIFQSLATLIGEY 59

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RPEE A+EQVF+ ++  + LKLGQAR  AI+S A + + V EY+   +K+AV+G G  DK
Sbjct: 60  RPEEFAIEQVFMARNPDSALKLGQARGAAIVSAANSGLAVHEYSARQVKQAVVGKGGADK 119

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
            Q+  M+++L+  S     DAADALAIA+CHA+ + S
Sbjct: 120 SQVQHMVQVLLSLSRKPQADAADALAIAMCHAHMSQS 156


>gi|83647603|ref|YP_436038.1| crossover junction endodeoxyribonuclease RuvC [Hahella chejuensis
           KCTC 2396]
 gi|123767362|sp|Q2SCL1|RUVC_HAHCH RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|83635646|gb|ABC31613.1| crossover junction endodeoxyribonuclease RuvC [Hahella chejuensis
           KCTC 2396]
          Length = 172

 Score =  110 bits (274), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 69/166 (41%), Positives = 108/166 (65%), Gaps = 8/166 (4%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVR---QSLAFRLCQLYEGLTDVIK 61
           ++++GIDPG R TG+G+V+  G    +V+SG    C+R   ++LA RL  +Y G+T V+ 
Sbjct: 2   LKVLGIDPGSRFTGYGVVEWGGGKPRYVASG----CIRVTGETLAERLRCIYLGVTQVVS 57

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
            + P+EAA+EQVF+ ++A + LKLGQAR +AIL+ A   + V+EY+   +K++V+G G+ 
Sbjct: 58  MYAPDEAAIEQVFMARNADSALKLGQARGVAILAMAEQGLQVAEYSAKKVKQSVVGKGNA 117

Query: 122 DKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
           +K Q+  M++ ++        DAADALAIAVCH  H      +I S
Sbjct: 118 EKWQVQHMMQAMLDLQAKPQADAADALAIAVCH-LHTQQSLMRIGS 162


>gi|218666715|ref|YP_002424574.1| crossover junction endodeoxyribonuclease RuvC [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|218518928|gb|ACK79514.1| crossover junction endodeoxyribonuclease RuvC [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 166

 Score =  110 bits (274), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 71/158 (44%), Positives = 100/158 (63%), Gaps = 4/158 (2%)

Query: 5   IRIIGIDPGLRRTGWGIV--DVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
           +RIIGIDPG  RTG+GI+  D AG+ L  V+ G + +   Q    R+  +Y  L  +I  
Sbjct: 1   MRIIGIDPGSLRTGYGIIESDAAGE-LRHVAHGCL-NVSGQPFLERIGAIYRELKQIIGT 58

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
           + PEEAA+EQVF+ ++A + LKLGQAR  A+++   A +PV EY    IKKA +G GH  
Sbjct: 59  YHPEEAAIEQVFMARNADSALKLGQARGAALVALLEAGLPVEEYTALQIKKAAVGGGHAA 118

Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           K+Q+  M++ L+  S     DAADALA A+CHA+H  +
Sbjct: 119 KEQVQSMVRWLLKLSENPQADAADALACAICHAHHGRT 156


>gi|291533990|emb|CBL07103.1| crossover junction endodeoxyribonuclease RuvC [Megamonas
           hypermegale ART12/1]
          Length = 164

 Score =  109 bits (273), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 57/158 (36%), Positives = 94/158 (59%), Gaps = 1/158 (0%)

Query: 8   IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEE 67
           +GIDPG    G+G+VD+ G  L  +  G I++  +     RL +++  LTD+I+ ++P+ 
Sbjct: 4   LGIDPGTAICGYGLVDMQGSRLKAIEYGAILTSPQMRPQDRLLKIHRELTDIIQKYKPDV 63

Query: 68  AAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ-I 126
             VEQ+F N++    + +GQAR I +L+ A  +I + E  P  IK++V+G G   K+Q I
Sbjct: 64  MGVEQLFFNRNVTTAIPVGQARGIVLLTAAENQIELVERTPLQIKQSVVGFGRASKEQVI 123

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYK 164
           +M+ K+L      K  D ADALA+A+C  +  NS  ++
Sbjct: 124 YMVTKLLHLPEPPKPDDVADALAVAICTTHCMNSLTWR 161


>gi|219849467|ref|YP_002463900.1| Holliday junction resolvase [Chloroflexus aggregans DSM 9485]
 gi|254767465|sp|B8G4I8|RUVC_CHLAD RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|219543726|gb|ACL25464.1| crossover junction endodeoxyribonuclease RuvC [Chloroflexus
           aggregans DSM 9485]
          Length = 164

 Score =  109 bits (273), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 67/157 (42%), Positives = 96/157 (61%), Gaps = 1/157 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R +GIDPG    GWG+V+  G  L  V  G + +        RL QLY GL  +I+  +
Sbjct: 1   MRALGIDPGTATMGWGVVERDGGVLRLVDVGALTTPAGMPQPERLLQLYNGLRAIIERLQ 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ AAVE++F  K+    L +GQAR +A+L+ A A IPV EY P  +K+AV G G  DK+
Sbjct: 61  PDTAAVEELFFGKNVNTALTVGQARGVALLALAQAGIPVYEYKPTAVKQAVAGYGGADKR 120

Query: 125 QIHMMLKMLMP-ESFFKGKDAADALAIAVCHAYHANS 160
           Q+  M+++ +   +  +  DAADALAIA+CHAY A +
Sbjct: 121 QMQEMVRLTLGLATVPRPDDAADALAIAICHAYTAPT 157


>gi|301060165|ref|ZP_07201032.1| crossover junction endodeoxyribonuclease RuvC [delta
           proteobacterium NaphS2]
 gi|300445677|gb|EFK09575.1| crossover junction endodeoxyribonuclease RuvC [delta
           proteobacterium NaphS2]
          Length = 167

 Score =  109 bits (273), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 53/150 (35%), Positives = 92/150 (61%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           IR++G+DPGLR TG+G+++     + F+ +G I    +   A ++ ++++G  ++++ ++
Sbjct: 2   IRVLGVDPGLRITGYGLLEEKNRRISFMEAGLIKPPEKLPFARKIHRIFQGTVELLERFK 61

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  AVE +F  K+A ++LKLG AR   + +     I V EY P  IKK+V+G G  DK+
Sbjct: 62  PDAMAVEDLFYAKNARSSLKLGHARGAILAAAGQHDISVFEYTPLEIKKSVVGYGRADKE 121

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCH 154
           Q+  M+  ++        DA+DALA A+CH
Sbjct: 122 QVRSMVNAILGLKKQVPIDASDALATAICH 151


>gi|257066396|ref|YP_003152652.1| crossover junction endodeoxyribonuclease RuvC [Anaerococcus
           prevotii DSM 20548]
 gi|256798276|gb|ACV28931.1| crossover junction endodeoxyribonuclease RuvC [Anaerococcus
           prevotii DSM 20548]
          Length = 164

 Score =  109 bits (273), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 50/152 (32%), Positives = 91/152 (59%), Gaps = 1/152 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPG+   G+G+++   + +  + +G + +  +     RL  LY+ L ++I+ ++
Sbjct: 1   MRILGIDPGIAIMGYGVIEFKENKIKVLENGVVTTSSKTKTGKRLELLYDNLHEIIEEFK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+E A+E++F N +    + +G AR I +L      +P+ EY P  IK+A+ G G   K 
Sbjct: 61  PDEFAIEELFFNSNVKTAIIVGHARGIQVLCAQQKGLPIYEYTPLQIKQAITGYGRASKS 120

Query: 125 QIHMMLKMLMP-ESFFKGKDAADALAIAVCHA 155
           Q+ + +  L+  ++  K  DAADAL++A+CHA
Sbjct: 121 QMQLTITQLLNLKAIPKPDDAADALSVALCHA 152


>gi|307545150|ref|YP_003897629.1| crossover junction endodeoxyribonuclease RuvC [Halomonas elongata
           DSM 2581]
 gi|307217174|emb|CBV42444.1| crossover junction endodeoxyribonuclease RuvC [Halomonas elongata
           DSM 2581]
          Length = 180

 Score =  109 bits (273), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 60/131 (45%), Positives = 84/131 (64%), Gaps = 7/131 (5%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVR---QSLAFRLCQLYEGLTDVIKNW 63
           I+GIDPG R TG+G++DV      +V+SG    C+R     LA RL Q+Y G++++I   
Sbjct: 3   ILGIDPGSRITGYGVLDVTTPTPRYVASG----CIRTRGDDLAQRLAQVYAGISELIGMH 58

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P E A+EQVF+ K+A + LKLGQAR  AI+  A   +PVSEY P  IK+AV G G  DK
Sbjct: 59  GPGEFAIEQVFMAKNADSALKLGQARGTAIVCAANHGLPVSEYGPRQIKQAVTGGGGADK 118

Query: 124 KQIHMMLKMLM 134
           +Q+  M+  ++
Sbjct: 119 RQVQHMVTAVL 129


>gi|189183830|ref|YP_001937615.1| Holliday junction resolvase [Orientia tsutsugamushi str. Ikeda]
 gi|238692244|sp|B3CSI0|RUVC_ORITI RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|189180601|dbj|BAG40381.1| holliday junction endodeoxyribonuclease RuvC [Orientia
           tsutsugamushi str. Ikeda]
          Length = 159

 Score =  109 bits (273), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 55/145 (37%), Positives = 85/145 (58%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDP L  TGWG++ ++G  + ++ SG I +  + SL  +L  +   +  +I  + P 
Sbjct: 3   ILGIDPSLVSTGWGVISISGSIVNYIDSGVIKTVSKDSLVLKLGNISLMIEKLITRFNPF 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+E+VF+NK+  +++ L QAR   +       I  SEYAPN IKKA++G G  +K Q+
Sbjct: 63  HVAMEEVFINKNYSSSVTLIQARGAIMSVIGRYNIDFSEYAPNKIKKAIVGAGKAEKHQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIA 151
             M+K+LM       KD +DALA A
Sbjct: 123 QQMVKLLMHIKKAISKDESDALATA 147


>gi|296101798|ref|YP_003611944.1| Holliday junction resolvase [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295056257|gb|ADF60995.1| Holliday junction resolvase [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 173

 Score =  109 bits (273), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 53/128 (41%), Positives = 85/128 (66%), Gaps = 1/128 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I + V + L  RL  +Y G+T++I  ++P+
Sbjct: 4   ILGIDPGSRVTGYGVIRQVGRQLTYLGSGCIRTKV-EDLPSRLKLIYAGVTEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR +AI++     +PV EYA   +K+ V+G+G  +K Q+
Sbjct: 63  YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQDLPVFEYAARQVKQTVVGIGSAEKSQV 122

Query: 127 HMMLKMLM 134
             M++ L+
Sbjct: 123 QHMVRTLL 130


>gi|284007615|emb|CBA73231.1| crossover junction endodeoxyribonuclease RuvC [Arsenophonus
           nasoniae]
          Length = 173

 Score =  109 bits (273), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 55/124 (44%), Positives = 83/124 (66%), Gaps = 1/124 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G+V   G  L ++ SG I + V   L  RL ++Y G+ ++I  ++P+
Sbjct: 4   ILGIDPGSRITGYGVVRQQGRQLIYLGSGCIRTQV-DDLPTRLQRIYAGIIEIITQYQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             AVEQVF+ K+A + LKLGQAR +AIL+    ++PV EYA   +K++V+G G  +KKQ+
Sbjct: 63  SFAVEQVFMAKNADSALKLGQARGVAILAAVNNQLPVFEYAARQVKQSVVGTGAAEKKQV 122

Query: 127 HMML 130
             M+
Sbjct: 123 QHMV 126


>gi|88800178|ref|ZP_01115746.1| Holliday junction resolvase [Reinekea sp. MED297]
 gi|88777024|gb|EAR08231.1| Holliday junction resolvase [Reinekea sp. MED297]
          Length = 171

 Score =  109 bits (273), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/160 (43%), Positives = 104/160 (65%), Gaps = 1/160 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R+TG+G+++  G  + +VSSG I      +LA RL  +Y  ++++I+ + P 
Sbjct: 2   ILGIDPGSRKTGFGLINQHGTRMEYVSSGVIRVHKEPTLADRLDLIYTSVSEIIEQFSPA 61

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ +   + LKLGQAR  AI++   ARI V EYA   +K++V G G+ DK QI
Sbjct: 62  CMAIEQVFMGRGPDSALKLGQARGAAIIAGTQARIDVYEYAARKVKQSVAGNGNADKDQI 121

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
             M+K ++       +DAADALAIA+CHAY+ ++G   IA
Sbjct: 122 GYMVKSILKLPGVPQEDAADALAIALCHAYN-HTGLVNIA 160


>gi|300813218|ref|ZP_07093586.1| crossover junction endodeoxyribonuclease RuvC [Peptoniphilus sp.
           oral taxon 836 str. F0141]
 gi|300512671|gb|EFK39803.1| crossover junction endodeoxyribonuclease RuvC [Peptoniphilus sp.
           oral taxon 836 str. F0141]
          Length = 164

 Score =  109 bits (273), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 56/156 (35%), Positives = 92/156 (58%), Gaps = 1/156 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGL   G+GI+D  G++   VS G I +  +  +  RL  +Y  ++++I  ++
Sbjct: 1   MRILGIDPGLAIIGYGILDFKGNSFKTVSYGQINTPAKTPITDRLDMIYSQMSELIIKFK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P++ A E++F NK+    + + QAR + +L+       V EY P  IKK+++G G   K+
Sbjct: 61  PDDIAFEELFFNKNVKTAITVAQARGVEVLAARQFTRNVYEYTPLQIKKSLVGYGRATKE 120

Query: 125 QIHMMLKMLMP-ESFFKGKDAADALAIAVCHAYHAN 159
           QI  M+K+L+  +   K  D ADALA+A+ H    N
Sbjct: 121 QIQYMVKVLLNLKEVPKPDDVADALAVAITHGSSIN 156


>gi|262372759|ref|ZP_06066038.1| crossover junction endodeoxyribonuclease RuvC [Acinetobacter junii
           SH205]
 gi|262312784|gb|EEY93869.1| crossover junction endodeoxyribonuclease RuvC [Acinetobacter junii
           SH205]
          Length = 181

 Score =  109 bits (273), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/160 (43%), Positives = 102/160 (63%), Gaps = 2/160 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           IIGIDPG R TG+GI++  G+ L FV +GTI +   Q +  RL +++ G+  ++K   P 
Sbjct: 4   IIGIDPGSRLTGYGIIEKDGNKLRFVDAGTIRTET-QEMPERLKRIFAGIERIVKFHGPT 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           EAAVEQVF+ ++  + LKLGQAR  AI +     + V+EY    IK++V+G G  +K+Q+
Sbjct: 63  EAAVEQVFMAQNPDSALKLGQARGAAIAALVNLDLQVAEYTARQIKQSVVGYGAAEKEQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
            MM+  L+  +     DAADALA A+CHA HA+    K+A
Sbjct: 123 QMMVMKLLNLTIQPQADAADALAAAICHA-HASGSMSKMA 161


>gi|241668353|ref|ZP_04755931.1| Holliday junction resolvase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254876886|ref|ZP_05249596.1| crossover junction endodeoxyribonuclease ruvC [Francisella
           philomiragia subsp. philomiragia ATCC 25015]
 gi|254842907|gb|EET21321.1| crossover junction endodeoxyribonuclease ruvC [Francisella
           philomiragia subsp. philomiragia ATCC 25015]
          Length = 171

 Score =  109 bits (273), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 68/162 (41%), Positives = 106/162 (65%), Gaps = 8/162 (4%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVR---QSLAFRLCQLYEGLTDVIKNW 63
           I+GIDPG R TG+GI+ +  + L +V+SG    C+R      A RL Q+ +G+T+V+  +
Sbjct: 3   ILGIDPGSRITGFGIIKIHDNKLYYVASG----CIRITETGTARRLKQIADGITEVVSTY 58

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P E+A+EQ+F+ ++  A LKLGQAR +A+ + A+  + VSEY+   IK+AV+G G   K
Sbjct: 59  APTESAIEQIFMFQNPGAALKLGQARGVAMCTLAINNLEVSEYSAKQIKQAVVGTGGAAK 118

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
            Q+  M++ ++  S    +DAADALAIA+CH YH++    +I
Sbjct: 119 SQVQHMVQSILGLSKKPPEDAADALAIAICH-YHSSKSLARI 159


>gi|293608303|ref|ZP_06690606.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|299770453|ref|YP_003732479.1| Holliday junction resolvase [Acinetobacter sp. DR1]
 gi|292828876|gb|EFF87238.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|298700541|gb|ADI91106.1| Holliday junction resolvase [Acinetobacter sp. DR1]
 gi|325121963|gb|ADY81486.1| Holliday junction nuclease [Acinetobacter calcoaceticus PHEA-2]
          Length = 181

 Score =  109 bits (273), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/160 (43%), Positives = 101/160 (63%), Gaps = 2/160 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           IIGIDPG R TG+GI++  G  L FV +GTI +   Q +  RL +++ G+  ++K   P 
Sbjct: 4   IIGIDPGSRLTGYGIIEKDGSKLRFVDAGTIRTET-QEMPERLKRIFAGVERIVKFHGPT 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           EAAVEQVF+ ++  + LKLGQAR  AI +     + V+EY    IK++V+G G  DK+Q+
Sbjct: 63  EAAVEQVFMAQNPDSALKLGQARGAAIAALVNLDLQVAEYTARQIKQSVVGYGAADKEQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
            MM+  L+  +     DAADALA A+CHA HA+    K++
Sbjct: 123 QMMVMRLLNLTIKPQSDAADALAAAICHA-HASGSMSKLS 161


>gi|85858585|ref|YP_460787.1| crossover junction endodeoxyribonuclease [Syntrophus aciditrophicus
           SB]
 gi|85721676|gb|ABC76619.1| crossover junction endodeoxyribonuclease [Syntrophus aciditrophicus
           SB]
          Length = 181

 Score =  109 bits (273), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 91/158 (57%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++++GIDPG   TG+GIV+   +    +  G I      S    L ++Y+ L  +++  +
Sbjct: 23  LKVLGIDPGSVVTGFGIVEQIQERYIDIVHGEIRLKRGTSFTSSLEKIYDELFSLVEREQ 82

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  A+E +F  K+  + +K G  R +AIL+ +   +PV EY P  IKKAV+G GH +K 
Sbjct: 83  PDAVAIEDIFYGKNIKSLIKQGHVRGVAILAGSKHHLPVFEYTPLEIKKAVVGYGHAEKI 142

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGY 162
           Q+  M+K++M  S     DA+DA+A+A+CH  H    +
Sbjct: 143 QVQNMIKVIMKLSELPPADASDAIAVAICHLNHQKKNH 180


>gi|113460654|ref|YP_718720.1| Holliday junction resolvase [Haemophilus somnus 129PT]
 gi|123327176|sp|Q0I243|RUVC_HAES1 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|112822697|gb|ABI24786.1| Holliday junction endonuclease RuvC [Haemophilus somnus 129PT]
          Length = 189

 Score =  109 bits (272), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 67/149 (44%), Positives = 95/149 (63%), Gaps = 1/149 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G+V   G  L ++ SG I + +   L  RL ++Y G+T++I  + P 
Sbjct: 4   ILGIDPGSRVTGYGVVRQVGHKLEYLGSGVIRTSI-DDLPTRLKRIYAGITEIITQFNPN 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+EQVF+ K+  + LKLGQAR  AI++     +PV EY+P TIK+ V+G G  +K Q+
Sbjct: 63  EFAIEQVFMAKNPDSALKLGQARGTAIVAAVNQNLPVFEYSPRTIKQTVVGTGAAEKSQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHA 155
             M+  L+  S     DAADALAIA+ HA
Sbjct: 123 QEMVVRLLQLSDKPQVDAADALAIAITHA 151


>gi|15802276|ref|NP_288300.1| Holliday junction resolvase [Escherichia coli O157:H7 EDL933]
 gi|15831827|ref|NP_310600.1| Holliday junction resolvase [Escherichia coli O157:H7 str. Sakai]
 gi|16129816|ref|NP_416377.1| component of RuvABC resolvasome, endonuclease [Escherichia coli
           str. K-12 substr. MG1655]
 gi|82543702|ref|YP_407649.1| Holliday junction resolvase [Shigella boydii Sb227]
 gi|82776449|ref|YP_402798.1| Holliday junction resolvase [Shigella dysenteriae Sd197]
 gi|89108703|ref|AP_002483.1| component of RuvABC resolvasome, endonuclease [Escherichia coli
           str. K-12 substr. W3110]
 gi|91211088|ref|YP_541074.1| Holliday junction resolvase [Escherichia coli UTI89]
 gi|110641981|ref|YP_669711.1| Holliday junction resolvase [Escherichia coli 536]
 gi|157161332|ref|YP_001458650.1| Holliday junction resolvase [Escherichia coli HS]
 gi|168747890|ref|ZP_02772912.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           O157:H7 str. EC4113]
 gi|168757897|ref|ZP_02782904.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           O157:H7 str. EC4401]
 gi|168762343|ref|ZP_02787350.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           O157:H7 str. EC4501]
 gi|168770846|ref|ZP_02795853.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           O157:H7 str. EC4486]
 gi|168776590|ref|ZP_02801597.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           O157:H7 str. EC4196]
 gi|168783163|ref|ZP_02808170.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           O157:H7 str. EC4076]
 gi|168801901|ref|ZP_02826908.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           O157:H7 str. EC508]
 gi|170019792|ref|YP_001724746.1| Holliday junction resolvase [Escherichia coli ATCC 8739]
 gi|170081519|ref|YP_001730839.1| component of RuvABC resolvasome, endonuclease [Escherichia coli
           str. K-12 substr. DH10B]
 gi|170682372|ref|YP_001743381.1| Holliday junction resolvase [Escherichia coli SMS-3-5]
 gi|170769344|ref|ZP_02903797.1| crossover junction endodeoxyribonuclease RuvC [Escherichia albertii
           TW07627]
 gi|187733397|ref|YP_001879759.1| Holliday junction resolvase [Shigella boydii CDC 3083-94]
 gi|188495826|ref|ZP_03003096.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           53638]
 gi|191168063|ref|ZP_03029862.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           B7A]
 gi|191173012|ref|ZP_03034546.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           F11]
 gi|193066044|ref|ZP_03047101.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           E22]
 gi|193069930|ref|ZP_03050879.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           E110019]
 gi|194429660|ref|ZP_03062178.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           B171]
 gi|194439042|ref|ZP_03071125.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           101-1]
 gi|195940291|ref|ZP_03085673.1| Holliday junction resolvase [Escherichia coli O157:H7 str. EC4024]
 gi|208810727|ref|ZP_03252603.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           O157:H7 str. EC4206]
 gi|208816719|ref|ZP_03257839.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           O157:H7 str. EC4045]
 gi|208820669|ref|ZP_03260989.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           O157:H7 str. EC4042]
 gi|209397411|ref|YP_002270946.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           O157:H7 str. EC4115]
 gi|209919230|ref|YP_002293314.1| Holliday junction resolvase [Escherichia coli SE11]
 gi|215487076|ref|YP_002329507.1| Holliday junction resolvase [Escherichia coli O127:H6 str.
           E2348/69]
 gi|217328864|ref|ZP_03444945.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           O157:H7 str. TW14588]
 gi|218548576|ref|YP_002382367.1| Holliday junction resolvase [Escherichia fergusonii ATCC 35469]
 gi|218554451|ref|YP_002387364.1| Holliday junction resolvase [Escherichia coli IAI1]
 gi|218558728|ref|YP_002391641.1| Holliday junction resolvase [Escherichia coli S88]
 gi|218689801|ref|YP_002398013.1| Holliday junction resolvase [Escherichia coli ED1a]
 gi|218695429|ref|YP_002403096.1| Holliday junction resolvase [Escherichia coli 55989]
 gi|218699565|ref|YP_002407194.1| Holliday junction resolvase [Escherichia coli IAI39]
 gi|218705364|ref|YP_002412883.1| Holliday junction resolvase [Escherichia coli UMN026]
 gi|227885709|ref|ZP_04003514.1| Holliday junction resolvase [Escherichia coli 83972]
 gi|238901078|ref|YP_002926874.1| component of RuvABC resolvasome, endonuclease [Escherichia coli
           BW2952]
 gi|253773180|ref|YP_003036011.1| Holliday junction resolvase [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|254161923|ref|YP_003045031.1| Holliday junction resolvase [Escherichia coli B str. REL606]
 gi|254793487|ref|YP_003078324.1| Holliday junction resolvase [Escherichia coli O157:H7 str. TW14359]
 gi|256017933|ref|ZP_05431798.1| Holliday junction resolvase [Shigella sp. D9]
 gi|256022471|ref|ZP_05436336.1| Holliday junction resolvase [Escherichia sp. 4_1_40B]
 gi|260844206|ref|YP_003221984.1| endonuclease RuvC [Escherichia coli O103:H2 str. 12009]
 gi|260855803|ref|YP_003229694.1| endonuclease RuvC [Escherichia coli O26:H11 str. 11368]
 gi|260868398|ref|YP_003234800.1| endonuclease RuvC [Escherichia coli O111:H- str. 11128]
 gi|261227636|ref|ZP_05941917.1| Holliday junction resolvase [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261258198|ref|ZP_05950731.1| Holliday junction resolvase [Escherichia coli O157:H7 str. FRIK966]
 gi|291283045|ref|YP_003499863.1| Crossover junction endodeoxyribonuclease ruvC [Escherichia coli
           O55:H7 str. CB9615]
 gi|293405358|ref|ZP_06649350.1| crossover junction endodeoxyribonuclease ruvC [Escherichia coli
           FVEC1412]
 gi|293410175|ref|ZP_06653751.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           B354]
 gi|293415178|ref|ZP_06657821.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           B185]
 gi|293446250|ref|ZP_06662672.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           B088]
 gi|298381000|ref|ZP_06990599.1| crossover junction endodeoxyribonuclease ruvC [Escherichia coli
           FVEC1302]
 gi|300816245|ref|ZP_07096467.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
           107-1]
 gi|300824195|ref|ZP_07104313.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
           119-7]
 gi|300899113|ref|ZP_07117396.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
           198-1]
 gi|300917560|ref|ZP_07134215.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
           115-1]
 gi|300924952|ref|ZP_07140879.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
           182-1]
 gi|300928894|ref|ZP_07144399.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
           187-1]
 gi|300935838|ref|ZP_07150796.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
           21-1]
 gi|300951485|ref|ZP_07165320.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
           116-1]
 gi|300956624|ref|ZP_07168903.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
           175-1]
 gi|300982167|ref|ZP_07175902.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
           200-1]
 gi|300994108|ref|ZP_07180691.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
           45-1]
 gi|301018301|ref|ZP_07182810.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
           69-1]
 gi|301029313|ref|ZP_07192410.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
           196-1]
 gi|301050783|ref|ZP_07197640.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
           185-1]
 gi|301327652|ref|ZP_07220860.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
           78-1]
 gi|301645621|ref|ZP_07245550.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
           146-1]
 gi|306814307|ref|ZP_07448473.1| Holliday junction resolvase [Escherichia coli NC101]
 gi|307138526|ref|ZP_07497882.1| Holliday junction resolvase [Escherichia coli H736]
 gi|307314225|ref|ZP_07593835.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli W]
 gi|309794244|ref|ZP_07688668.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
           145-7]
 gi|312967066|ref|ZP_07781284.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           2362-75]
 gi|312969904|ref|ZP_07784087.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           1827-70]
 gi|331657912|ref|ZP_08358874.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           TA206]
 gi|331663359|ref|ZP_08364269.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           TA143]
 gi|331668558|ref|ZP_08369406.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           TA271]
 gi|331683369|ref|ZP_08383970.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           H299]
 gi|67472394|sp|P0A814|RUVC_ECOLI RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|67472395|sp|P0A815|RUVC_ECOL6 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|67472396|sp|P0A816|RUVC_ECO57 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|90146479|sp|Q322D7|RUVC_SHIBS RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|90146483|sp|Q32H98|RUVC_SHIDS RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|122423490|sp|Q1RAS1|RUVC_ECOUT RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|123343925|sp|Q0TGW9|RUVC_ECOL5 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|167012679|sp|A8A163|RUVC_ECOHS RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|187611416|sp|A1AC24|RUVC_ECOK1 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|189046066|sp|B1J0M5|RUVC_ECOLC RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|226698753|sp|B5YR08|RUVC_ECO5E RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|226698754|sp|B6IBU2|RUVC_ECOSE RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|226725469|sp|B7MBS2|RUVC_ECO45 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|226725470|sp|B7NS55|RUVC_ECO7I RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|226725471|sp|B7M2F4|RUVC_ECO8A RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|226725472|sp|B7NBL4|RUVC_ECOLU RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|226725473|sp|B1LD08|RUVC_ECOSM RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|226725474|sp|B7LPI1|RUVC_ESCF3 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|229484902|sp|B1XHD1|RUVC_ECODH RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|238691720|sp|B2TXL5|RUVC_SHIB3 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|254767471|sp|B7USP0|RUVC_ECO27 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|254767472|sp|B7L7R6|RUVC_ECO55 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|254767473|sp|B7MVZ4|RUVC_ECO81 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|259495686|sp|C4ZQE7|RUVC_ECOBW RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|12515919|gb|AAG56853.1|AE005408_11 Holliday junction nuclease; resolution of structures; repair
           [Escherichia coli O157:H7 str. EDL933]
 gi|42175|emb|CAA42128.1| ruvC [Escherichia coli K-12]
 gi|216653|dbj|BAA01032.1| RuvC [Escherichia coli]
 gi|1736510|dbj|BAA15674.1| component of RuvABC resolvasome, endonuclease [Escherichia coli
           str. K12 substr. W3110]
 gi|1788170|gb|AAC74933.1| component of RuvABC resolvasome, endonuclease [Escherichia coli
           str. K-12 substr. MG1655]
 gi|13362041|dbj|BAB35996.1| Holliday junction nuclease [Escherichia coli O157:H7 str. Sakai]
 gi|81240597|gb|ABB61307.1| Holliday junction nuclease [Shigella dysenteriae Sd197]
 gi|81245113|gb|ABB65821.1| Holliday junction nuclease [Shigella boydii Sb227]
 gi|91072662|gb|ABE07543.1| RuvC protein, Holliday junction nuclease [Escherichia coli UTI89]
 gi|110343573|gb|ABG69810.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           536]
 gi|157067012|gb|ABV06267.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli HS]
 gi|169754720|gb|ACA77419.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           ATCC 8739]
 gi|169889354|gb|ACB03061.1| component of RuvABC resolvasome, endonuclease [Escherichia coli
           str. K-12 substr. DH10B]
 gi|170121668|gb|EDS90599.1| crossover junction endodeoxyribonuclease RuvC [Escherichia albertii
           TW07627]
 gi|170520090|gb|ACB18268.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           SMS-3-5]
 gi|187430389|gb|ACD09663.1| crossover junction endodeoxyribonuclease RuvC [Shigella boydii CDC
           3083-94]
 gi|187768114|gb|EDU31958.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           O157:H7 str. EC4196]
 gi|188017407|gb|EDU55529.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           O157:H7 str. EC4113]
 gi|188491025|gb|EDU66128.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           53638]
 gi|188999434|gb|EDU68420.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           O157:H7 str. EC4076]
 gi|189355185|gb|EDU73604.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           O157:H7 str. EC4401]
 gi|189360291|gb|EDU78710.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           O157:H7 str. EC4486]
 gi|189367402|gb|EDU85818.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           O157:H7 str. EC4501]
 gi|189376053|gb|EDU94469.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           O157:H7 str. EC508]
 gi|190901861|gb|EDV61611.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           B7A]
 gi|190906723|gb|EDV66328.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           F11]
 gi|192926281|gb|EDV80918.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           E22]
 gi|192956830|gb|EDV87284.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           E110019]
 gi|194412302|gb|EDX28606.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           B171]
 gi|194422001|gb|EDX38005.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           101-1]
 gi|208725243|gb|EDZ74950.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           O157:H7 str. EC4206]
 gi|208731062|gb|EDZ79751.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           O157:H7 str. EC4045]
 gi|208740792|gb|EDZ88474.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           O157:H7 str. EC4042]
 gi|209158811|gb|ACI36244.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           O157:H7 str. EC4115]
 gi|209767448|gb|ACI82036.1| Holliday junction nuclease [Escherichia coli]
 gi|209767450|gb|ACI82037.1| Holliday junction nuclease [Escherichia coli]
 gi|209767452|gb|ACI82038.1| Holliday junction nuclease [Escherichia coli]
 gi|209767456|gb|ACI82040.1| Holliday junction nuclease [Escherichia coli]
 gi|209912489|dbj|BAG77563.1| holliday junction nuclease [Escherichia coli SE11]
 gi|215265148|emb|CAS09536.1| RuvC component of RuvABC resolvasome, endonuclease [Escherichia
           coli O127:H6 str. E2348/69]
 gi|217318211|gb|EEC26638.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           O157:H7 str. TW14588]
 gi|218352161|emb|CAU97900.1| component of RuvABC resolvasome, endonuclease [Escherichia coli
           55989]
 gi|218356117|emb|CAQ88734.1| component of RuvABC resolvasome, endonuclease [Escherichia
           fergusonii ATCC 35469]
 gi|218361219|emb|CAQ98803.1| component of RuvABC resolvasome, endonuclease [Escherichia coli
           IAI1]
 gi|218365497|emb|CAR03224.1| component of RuvABC resolvasome, endonuclease [Escherichia coli
           S88]
 gi|218369551|emb|CAR17320.1| component of RuvABC resolvasome, endonuclease [Escherichia coli
           IAI39]
 gi|218427365|emb|CAR08260.2| component of RuvABC resolvasome, endonuclease [Escherichia coli
           ED1a]
 gi|218432461|emb|CAR13354.1| component of RuvABC resolvasome, endonuclease [Escherichia coli
           UMN026]
 gi|222033612|emb|CAP76353.1| Crossover junction endodeoxyribonuclease ruvC [Escherichia coli
           LF82]
 gi|227837282|gb|EEJ47748.1| Holliday junction resolvase [Escherichia coli 83972]
 gi|238860168|gb|ACR62166.1| component of RuvABC resolvasome, endonuclease [Escherichia coli
           BW2952]
 gi|242377584|emb|CAQ32339.1| Holliday junction nuclease; resolution of structures; repair,
           subunit of resolvasome [Escherichia coli BL21(DE3)]
 gi|253324224|gb|ACT28826.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253973824|gb|ACT39495.1| Holliday junction resolvase [Escherichia coli B str. REL606]
 gi|253978018|gb|ACT43688.1| Holliday junction resolvase [Escherichia coli BL21(DE3)]
 gi|254592887|gb|ACT72248.1| component of RuvABC resolvasome, endonuclease [Escherichia coli
           O157:H7 str. TW14359]
 gi|257754452|dbj|BAI25954.1| endonuclease RuvC [Escherichia coli O26:H11 str. 11368]
 gi|257759353|dbj|BAI30850.1| endonuclease RuvC [Escherichia coli O103:H2 str. 12009]
 gi|257764754|dbj|BAI36249.1| endonuclease RuvC [Escherichia coli O111:H- str. 11128]
 gi|260449014|gb|ACX39436.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           DH1]
 gi|281178933|dbj|BAI55263.1| holliday junction nuclease [Escherichia coli SE15]
 gi|284921783|emb|CBG34856.1| crossover junction endodeoxyribonuclease [Escherichia coli 042]
 gi|290762918|gb|ADD56879.1| Crossover junction endodeoxyribonuclease ruvC [Escherichia coli
           O55:H7 str. CB9615]
 gi|291323080|gb|EFE62508.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           B088]
 gi|291427566|gb|EFF00593.1| crossover junction endodeoxyribonuclease ruvC [Escherichia coli
           FVEC1412]
 gi|291432826|gb|EFF05805.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           B185]
 gi|291470643|gb|EFF13127.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           B354]
 gi|294489901|gb|ADE88657.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           IHE3034]
 gi|298278442|gb|EFI19956.1| crossover junction endodeoxyribonuclease ruvC [Escherichia coli
           FVEC1302]
 gi|299877739|gb|EFI85950.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
           196-1]
 gi|300297538|gb|EFJ53923.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
           185-1]
 gi|300307323|gb|EFJ61843.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
           200-1]
 gi|300316606|gb|EFJ66390.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
           175-1]
 gi|300357270|gb|EFJ73140.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
           198-1]
 gi|300399737|gb|EFJ83275.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
           69-1]
 gi|300406370|gb|EFJ89908.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
           45-1]
 gi|300415214|gb|EFJ98524.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
           115-1]
 gi|300418888|gb|EFK02199.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
           182-1]
 gi|300449235|gb|EFK12855.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
           116-1]
 gi|300458950|gb|EFK22443.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
           21-1]
 gi|300463122|gb|EFK26615.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
           187-1]
 gi|300523266|gb|EFK44335.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
           119-7]
 gi|300530935|gb|EFK51997.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
           107-1]
 gi|300845800|gb|EFK73560.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
           78-1]
 gi|301076153|gb|EFK90959.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
           146-1]
 gi|305852466|gb|EFM52917.1| Holliday junction resolvase [Escherichia coli NC101]
 gi|306906194|gb|EFN36712.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli W]
 gi|307553882|gb|ADN46657.1| holliday junction nuclease [Escherichia coli ABU 83972]
 gi|307626654|gb|ADN70958.1| Holliday junction resolvase [Escherichia coli UM146]
 gi|308122149|gb|EFO59411.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
           145-7]
 gi|309702087|emb|CBJ01401.1| crossover junction endodeoxyribonuclease [Escherichia coli ETEC
           H10407]
 gi|310338189|gb|EFQ03278.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           1827-70]
 gi|312288530|gb|EFR16432.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           2362-75]
 gi|312946463|gb|ADR27290.1| Holliday junction resolvase [Escherichia coli O83:H1 str. NRG 857C]
 gi|315061169|gb|ADT75496.1| component of RuvABC resolvasome, endonuclease [Escherichia coli W]
 gi|315136506|dbj|BAJ43665.1| crossover junction endodeoxyribonuclease ruvC [Escherichia coli
           DH1]
 gi|315286568|gb|EFU46003.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
           110-3]
 gi|315290342|gb|EFU49718.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
           153-1]
 gi|315296554|gb|EFU55851.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
           16-3]
 gi|320186108|gb|EFW60852.1| Crossover junction endodeoxyribonuclease RuvC [Shigella flexneri
           CDC 796-83]
 gi|320188564|gb|EFW63226.1| Crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           O157:H7 str. EC1212]
 gi|320194421|gb|EFW69052.1| Crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           WV_060327]
 gi|320198057|gb|EFW72665.1| Crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           EC4100B]
 gi|320641717|gb|EFX11105.1| Holliday junction resolvase [Escherichia coli O157:H7 str. G5101]
 gi|320647077|gb|EFX15910.1| Holliday junction resolvase [Escherichia coli O157:H- str. 493-89]
 gi|320652360|gb|EFX20658.1| Holliday junction resolvase [Escherichia coli O157:H- str. H 2687]
 gi|320657961|gb|EFX25723.1| Holliday junction resolvase [Escherichia coli O55:H7 str. 3256-97
           TW 07815]
 gi|320658534|gb|EFX26228.1| Holliday junction resolvase [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320668432|gb|EFX35259.1| Holliday junction resolvase [Escherichia coli O157:H7 str. LSU-61]
 gi|323152648|gb|EFZ38924.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           EPECa14]
 gi|323158652|gb|EFZ44666.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           E128010]
 gi|323174756|gb|EFZ60372.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           LT-68]
 gi|323186361|gb|EFZ71711.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           1357]
 gi|323186871|gb|EFZ72190.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           RN587/1]
 gi|323378254|gb|ADX50522.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           KO11]
 gi|323937121|gb|EGB33401.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           E1520]
 gi|323940469|gb|EGB36660.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           E482]
 gi|323948251|gb|EGB44239.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           H120]
 gi|323952365|gb|EGB48238.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           H252]
 gi|323956494|gb|EGB52236.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           H263]
 gi|323961918|gb|EGB57517.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           H489]
 gi|323968285|gb|EGB63692.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           M863]
 gi|323972629|gb|EGB67832.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           TA007]
 gi|323977952|gb|EGB73038.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           TW10509]
 gi|324007230|gb|EGB76449.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
           57-2]
 gi|324012868|gb|EGB82087.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
           60-1]
 gi|324018006|gb|EGB87225.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
           117-3]
 gi|324113599|gb|EGC07574.1| crossover junction endodeoxyribonuclease RuvC [Escherichia
           fergusonii B253]
 gi|324118923|gb|EGC12812.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           E1167]
 gi|326342243|gb|EGD66024.1| Crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           O157:H7 str. 1044]
 gi|326343793|gb|EGD67555.1| Crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           O157:H7 str. 1125]
 gi|327252992|gb|EGE64646.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           STEC_7v]
 gi|330911673|gb|EGH40183.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           AA86]
 gi|331056160|gb|EGI28169.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           TA206]
 gi|331059158|gb|EGI31135.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           TA143]
 gi|331063752|gb|EGI35663.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           TA271]
 gi|331079584|gb|EGI50781.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           H299]
 gi|332096544|gb|EGJ01538.1| crossover junction endodeoxyribonuclease RuvC [Shigella boydii
           3594-74]
 gi|332343589|gb|AEE56923.1| holliday junction endodeoxyribonuclease RuvC [Escherichia coli
           UMNK88]
          Length = 173

 Score =  109 bits (272), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 53/128 (41%), Positives = 84/128 (65%), Gaps = 1/128 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I + V   L  RL  +Y G+T++I  ++P+
Sbjct: 4   ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKV-DDLPSRLKLIYAGVTEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR +AI++     +PV EYA   +K+ V+G+G  +K Q+
Sbjct: 63  YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 122

Query: 127 HMMLKMLM 134
             M++ L+
Sbjct: 123 QHMVRTLL 130


>gi|300723090|ref|YP_003712388.1| Holliday junction nuclease [Xenorhabdus nematophila ATCC 19061]
 gi|297629605|emb|CBJ90208.1| Holliday junction nuclease [Xenorhabdus nematophila ATCC 19061]
          Length = 173

 Score =  109 bits (272), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 55/131 (41%), Positives = 85/131 (64%), Gaps = 1/131 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I + V   L  RL ++Y G+T++I  ++P+
Sbjct: 4   ILGIDPGSRVTGYGVIRQQGRQLIYLGSGCIRTKV-DDLPSRLQRIYAGITEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+  + LKLGQAR +AI++ A   IPV EYA   +K+ V+G G  +K QI
Sbjct: 63  AFAIEQVFMAKNPDSALKLGQARGVAIVAAANQSIPVFEYAARQVKQTVVGTGAAEKSQI 122

Query: 127 HMMLKMLMPES 137
             M++ ++  S
Sbjct: 123 QHMVRSMLKLS 133


>gi|330445531|ref|ZP_08309183.1| crossover junction endodeoxyribonuclease RuvC [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
 gi|328489722|dbj|GAA03680.1| crossover junction endodeoxyribonuclease RuvC [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
          Length = 173

 Score =  109 bits (272), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 67/153 (43%), Positives = 101/153 (66%), Gaps = 7/153 (4%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQS---LAFRLCQLYEGLTDVIKNW 63
           I+GIDPG R TG+G++   G  L ++ SG    C+R S   +  RL Q+Y G+++VI  +
Sbjct: 4   ILGIDPGSRITGYGVIRQVGRKLEYLGSG----CIRTSEPDIPGRLKQIYAGVSEVITQF 59

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +P+  A+E+VF+ K+A + +KLGQAR  AI++   A +PVSEYA   IK+AV+G G  DK
Sbjct: 60  QPDCFAIEEVFMGKNASSAIKLGQARGSAIVAAVNADLPVSEYAARLIKQAVVGTGGADK 119

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
            Q+  M+  ++  +     DAADALA+A+CHA+
Sbjct: 120 AQVQHMVCSVLKLAGKPQADAADALAVAICHAH 152


>gi|298529993|ref|ZP_07017395.1| crossover junction endodeoxyribonuclease RuvC [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509367|gb|EFI33271.1| crossover junction endodeoxyribonuclease RuvC [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 170

 Score =  109 bits (272), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 55/148 (37%), Positives = 92/148 (62%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G+V      L  + +GTI +  +  L+ RL  ++  +  +I  + P+
Sbjct: 10  ILGIDPGSRCTGYGVVRETSGCLELLGTGTIRTNGQDDLSTRLDTIFTRICSLIHEFSPD 69

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           +AAVE+VF +K+A + LKLGQAR   I++ +  ++PV  Y P  +KK+++G G   K+Q+
Sbjct: 70  QAAVEEVFTSKNASSALKLGQARGAVIVACSHQKVPVYSYEPTLVKKSLVGGGRAGKEQV 129

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCH 154
             M+  ++       +DA+DALA+A+ H
Sbjct: 130 AFMVAQMLGCKPRWAQDASDALAVAIAH 157


>gi|238898057|ref|YP_002923738.1| Holliday junction nuclease [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|259495689|sp|C4K4U7|RUVC_HAMD5 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|229465816|gb|ACQ67590.1| Holliday junction nuclease [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 159

 Score =  109 bits (272), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 53/128 (41%), Positives = 84/128 (65%), Gaps = 1/128 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++    + L ++ SG I   +   L  +L  +Y G+T++I  +RP+
Sbjct: 4   ILGIDPGSRITGYGVISEKKNQLIYLGSGCI-RTLDNGLPHKLKLIYAGVTEIISQFRPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
              +EQVF++K+A + LKLGQAR +AI++ A   +PV EYA   +K+ V+G G  DKKQ+
Sbjct: 63  FFCIEQVFMSKNADSALKLGQARGVAIVAAANQNLPVFEYAARQVKQTVVGNGAADKKQV 122

Query: 127 HMMLKMLM 134
             M++ L+
Sbjct: 123 QHMVRYLL 130


>gi|212711937|ref|ZP_03320065.1| hypothetical protein PROVALCAL_03012 [Providencia alcalifaciens DSM
           30120]
 gi|212685459|gb|EEB44987.1| hypothetical protein PROVALCAL_03012 [Providencia alcalifaciens DSM
           30120]
          Length = 173

 Score =  109 bits (272), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 54/131 (41%), Positives = 86/131 (65%), Gaps = 1/131 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I + V   L  RL ++Y G++++I  ++P+
Sbjct: 4   ILGIDPGSRITGYGVIRQQGRQLLYLGSGCIRTQV-DDLPSRLQRIYAGVSEIITQYQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             ++EQVF+ K+A + LKLGQAR +AI++ A   IPV EYA   +K+ V+G G  +K Q+
Sbjct: 63  VLSIEQVFMAKNADSALKLGQARGVAIVAAANQNIPVFEYAARQVKQTVVGTGSAEKSQV 122

Query: 127 HMMLKMLMPES 137
             M+K ++  S
Sbjct: 123 QHMVKSILKLS 133


>gi|290967869|ref|ZP_06559419.1| crossover junction endodeoxyribonuclease RuvC [Megasphaera
           genomosp. type_1 str. 28L]
 gi|290782008|gb|EFD94586.1| crossover junction endodeoxyribonuclease RuvC [Megasphaera
           genomosp. type_1 str. 28L]
          Length = 166

 Score =  109 bits (272), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 57/157 (36%), Positives = 90/157 (57%), Gaps = 1/157 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R +GIDPG    G+G+VD  G  L  V+ GTI +    + A RL  L++GL ++   ++
Sbjct: 1   MRALGIDPGTAICGFGVVDAQGSRLHPVTYGTIRTSPEDTDAQRLVMLFKGLKELYATYQ 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+   VEQ+F N++    + +GQAR I +L+   A IP+ E+ P  +K+ V G G   K+
Sbjct: 61  PDVVGVEQLFFNRNVTTAITVGQARGIILLTAEQAGIPILEFTPLQVKQGVTGYGRATKE 120

Query: 125 QI-HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           Q+  M +++L      K  DAAD LA+A+   Y  +S
Sbjct: 121 QVTDMTMRILGIREKIKPDDAADGLAMAIYAVYSQHS 157


>gi|333004716|gb|EGK24239.1| crossover junction endodeoxyribonuclease RuvC [Shigella flexneri
           K-272]
 gi|333018437|gb|EGK37735.1| crossover junction endodeoxyribonuclease RuvC [Shigella flexneri
           K-227]
          Length = 173

 Score =  109 bits (272), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 53/128 (41%), Positives = 84/128 (65%), Gaps = 1/128 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I + V   L  RL  +Y G+T++I  ++P+
Sbjct: 4   ILGIDPGSRVTGYGVISQVGRQLSYLGSGCIRTKV-DDLPSRLKLIYAGVTEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR +AI++     +PV EYA   +K+ V+G+G  +K Q+
Sbjct: 63  YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGMGSAEKSQV 122

Query: 127 HMMLKMLM 134
             M++ L+
Sbjct: 123 QHMVRTLL 130


>gi|213613175|ref|ZP_03371001.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 141

 Score =  109 bits (272), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 53/128 (41%), Positives = 84/128 (65%), Gaps = 1/128 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I + V   L  RL  +Y G+T++I  ++P+
Sbjct: 4   ILGIDPGSRITGYGVIRQVGRQLTYLGSGCIRTKV-DDLPSRLKLIYAGVTEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR +AI++     +PV EYA   +K+ V+G+G  +K Q+
Sbjct: 63  YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 122

Query: 127 HMMLKMLM 134
             M++ L+
Sbjct: 123 QHMVRTLL 130


>gi|149184937|ref|ZP_01863254.1| Holliday junction resolvase [Erythrobacter sp. SD-21]
 gi|148831048|gb|EDL49482.1| Holliday junction resolvase [Erythrobacter sp. SD-21]
          Length = 160

 Score =  109 bits (272), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 53/129 (41%), Positives = 79/129 (61%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+G+DP L  TGWG++   G  +  +++G + +  +  +A RL  L   L  VI   RP+
Sbjct: 3   ILGLDPSLSCTGWGVIRAEGSRIAHIANGQVPTDAKAPMARRLSHLQTALEAVIAEHRPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
            AA E+VFVNK+  +TLKL QAR   + +   A + V+E+A   +KKAV+G G  DK Q+
Sbjct: 63  RAAAEEVFVNKNPQSTLKLAQARGAVLAACGAAGLDVNEHAARLVKKAVVGTGGADKTQV 122

Query: 127 HMMLKMLMP 135
             MLK+L+P
Sbjct: 123 QAMLKVLLP 131


>gi|320182599|gb|EFW57488.1| Crossover junction endodeoxyribonuclease RuvC [Shigella boydii ATCC
           9905]
          Length = 173

 Score =  109 bits (272), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 53/128 (41%), Positives = 84/128 (65%), Gaps = 1/128 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I + V   L  RL  +Y G+T++I  ++P+
Sbjct: 4   ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKV-DDLPSRLKLIYAGVTEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR +AI++     +PV EYA   +K+ V+G+G  +K Q+
Sbjct: 63  YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 122

Query: 127 HMMLKMLM 134
             M++ L+
Sbjct: 123 QHMVRTLL 130


>gi|213582031|ref|ZP_03363857.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
          Length = 162

 Score =  109 bits (272), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 53/128 (41%), Positives = 84/128 (65%), Gaps = 1/128 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I + V   L  RL  +Y G+T++I  ++P+
Sbjct: 4   ILGIDPGSRITGYGVIRQVGRQLTYLGSGCIRTKV-DDLPSRLKLIYAGVTEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR +AI++     +PV EYA   +K+ V+G+G  +K Q+
Sbjct: 63  YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 122

Query: 127 HMMLKMLM 134
             M++ L+
Sbjct: 123 QHMVRTLL 130


>gi|254429277|ref|ZP_05042984.1| crossover junction endodeoxyribonuclease RuvC [Alcanivorax sp.
           DG881]
 gi|196195446|gb|EDX90405.1| crossover junction endodeoxyribonuclease RuvC [Alcanivorax sp.
           DG881]
          Length = 187

 Score =  109 bits (272), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 66/150 (44%), Positives = 100/150 (66%), Gaps = 1/150 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG RRTG+G+VDV G+    V+ GTI +   + +  RL +++ G+  V+K + P 
Sbjct: 19  ILGIDPGSRRTGYGVVDVVGNRSRAVAFGTIAT-THKEIPPRLGEIFAGIDQVVKEFGPA 77

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E ++E+VF+ ++A + LKLGQAR  AI +   A +PV EY+   +K+AV+G G  +K Q+
Sbjct: 78  EVSIEKVFMARNADSALKLGQARGAAIAAVMQAHVPVFEYSARQVKQAVVGKGGAEKNQV 137

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAY 156
             M+K L+       +DAADALAIA+CHA+
Sbjct: 138 GEMVKYLLKLEQRPQEDAADALAIALCHAH 167


>gi|282882970|ref|ZP_06291574.1| crossover junction endodeoxyribonuclease RuvC [Peptoniphilus
           lacrimalis 315-B]
 gi|281297177|gb|EFA89669.1| crossover junction endodeoxyribonuclease RuvC [Peptoniphilus
           lacrimalis 315-B]
          Length = 164

 Score =  109 bits (272), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 56/156 (35%), Positives = 91/156 (58%), Gaps = 1/156 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGL   G+GI+D  G++   VS G I +  +  +  RL  +Y  ++++I  ++
Sbjct: 1   MRILGIDPGLAIIGYGILDFKGNSFKTVSYGQINTPAKTPITDRLEMIYSQMSELIIKFK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P++ A E++F NK+    + + QAR + +L+       V EY P  IKK+++G G   K+
Sbjct: 61  PDDIAFEELFFNKNVKTAITVAQARGVEVLAARQFTRNVYEYTPLQIKKSLVGYGRATKE 120

Query: 125 QIHMMLKMLMP-ESFFKGKDAADALAIAVCHAYHAN 159
           QI  M+K+L+      K  D ADALA+A+ H    N
Sbjct: 121 QIQYMVKVLLNLNEVPKPDDVADALAVAITHGSSIN 156


>gi|999741|pdb|1HJR|A Chain A, Atomic Structure Of The Ruvc Resolvase: A Holliday
           Junction- Specific Endonuclease From E. Coli
 gi|999742|pdb|1HJR|B Chain B, Atomic Structure Of The Ruvc Resolvase: A Holliday
           Junction- Specific Endonuclease From E. Coli
 gi|999743|pdb|1HJR|C Chain C, Atomic Structure Of The Ruvc Resolvase: A Holliday
           Junction- Specific Endonuclease From E. Coli
 gi|999744|pdb|1HJR|D Chain D, Atomic Structure Of The Ruvc Resolvase: A Holliday
           Junction- Specific Endonuclease From E. Coli
          Length = 158

 Score =  109 bits (272), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 53/128 (41%), Positives = 84/128 (65%), Gaps = 1/128 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I + V   L  RL  +Y G+T++I  ++P+
Sbjct: 3   ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKV-DDLPSRLKLIYAGVTEIITQFQPD 61

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR +AI++     +PV EYA   +K+ V+G+G  +K Q+
Sbjct: 62  YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 121

Query: 127 HMMLKMLM 134
             M++ L+
Sbjct: 122 QHMVRTLL 129


>gi|26248129|ref|NP_754169.1| Holliday junction resolvase [Escherichia coli CFT073]
 gi|117624015|ref|YP_852928.1| Holliday junction resolvase [Escherichia coli APEC O1]
 gi|237705817|ref|ZP_04536298.1| holliday junction resolvase [Escherichia sp. 3_2_53FAA]
 gi|331642477|ref|ZP_08343612.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           H736]
 gi|331647460|ref|ZP_08348552.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           M605]
 gi|331653272|ref|ZP_08354277.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           M718]
 gi|331673393|ref|ZP_08374161.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           TA280]
 gi|331677744|ref|ZP_08378419.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           H591]
 gi|332278967|ref|ZP_08391380.1| holliday junction resolvase [Shigella sp. D9]
 gi|26108532|gb|AAN80734.1|AE016761_309 Crossover junction endodeoxyribonuclease ruvC [Escherichia coli
           CFT073]
 gi|115513139|gb|ABJ01214.1| crossover junction endodeoxyribonuclease [Escherichia coli APEC O1]
 gi|195182925|dbj|BAG66493.1| Holliday junction nuclease [Escherichia coli O111:H-]
 gi|226900574|gb|EEH86833.1| holliday junction resolvase [Escherichia sp. 3_2_53FAA]
 gi|325496994|gb|EGC94853.1| Holliday junction resolvase [Escherichia fergusonii ECD227]
 gi|331039275|gb|EGI11495.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           H736]
 gi|331043184|gb|EGI15322.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           M605]
 gi|331049370|gb|EGI21442.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           M718]
 gi|331069591|gb|EGI40978.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           TA280]
 gi|331074204|gb|EGI45524.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           H591]
 gi|332101319|gb|EGJ04665.1| holliday junction resolvase [Shigella sp. D9]
          Length = 174

 Score =  109 bits (272), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 53/128 (41%), Positives = 84/128 (65%), Gaps = 1/128 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I + V   L  RL  +Y G+T++I  ++P+
Sbjct: 5   ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKV-DDLPSRLKLIYAGVTEIITQFQPD 63

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR +AI++     +PV EYA   +K+ V+G+G  +K Q+
Sbjct: 64  YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 123

Query: 127 HMMLKMLM 134
             M++ L+
Sbjct: 124 QHMVRTLL 131


>gi|119952830|ref|YP_945039.1| crossover junction endodeoxyribonuclease RuvC [Borrelia turicatae
           91E135]
 gi|254767460|sp|A1QYH7|RUVC_BORT9 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|119861601|gb|AAX17369.1| crossover junction endodeoxyribonuclease RuvC [Borrelia turicatae
           91E135]
          Length = 161

 Score =  109 bits (272), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 53/157 (33%), Positives = 92/157 (58%), Gaps = 4/157 (2%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGL   GWGI+D  G    +V  GT+++    SL  RL  + + +  +I N++
Sbjct: 3   MRILGIDPGLANVGWGILDRKGSKYMYVQDGTVITHPFMSLKDRLKLISDEIILIIDNFK 62

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ A++E ++  K+    + + +AR   IL+ AL  +   EY P  +K ++ G G  +K 
Sbjct: 63  PDVASIENIYFAKNKKTAISVSEARGAIILTFALKNLDFYEYTPIQVKNSISGFGRIEKV 122

Query: 125 QIHMMLKMLM---PESFFKGKDAADALAIAVCHA-YH 157
           Q+  ++++L+   P+  F    ++DALA+A+CH  YH
Sbjct: 123 QVKYVIRILLGMKPDFIFTSDHSSDALALAICHGNYH 159


>gi|161613546|ref|YP_001587511.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|167552466|ref|ZP_02346219.1| crossover junction endodeoxyribonuclease RuvC [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
 gi|168259827|ref|ZP_02681800.1| crossover junction endodeoxyribonuclease RuvC [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|198245392|ref|YP_002215187.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|200389414|ref|ZP_03216025.1| crossover junction endodeoxyribonuclease RuvC [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|189046078|sp|A9MUC2|RUVC_SALPB RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|226698764|sp|B5FSN3|RUVC_SALDC RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|161362910|gb|ABX66678.1| hypothetical protein SPAB_01266 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|197939908|gb|ACH77241.1| crossover junction endodeoxyribonuclease RuvC [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|199601859|gb|EDZ00405.1| crossover junction endodeoxyribonuclease RuvC [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|205322935|gb|EDZ10774.1| crossover junction endodeoxyribonuclease RuvC [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
 gi|205350788|gb|EDZ37419.1| crossover junction endodeoxyribonuclease RuvC [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|326622935|gb|EGE29280.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
          Length = 173

 Score =  109 bits (272), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 53/128 (41%), Positives = 84/128 (65%), Gaps = 1/128 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I + V   L  RL  +Y G+T++I  ++P+
Sbjct: 4   ILGIDPGSRITGYGVIRQVGRQLTYLGSGCIRTKV-DDLPSRLKLIYAGVTEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR +AI++     +PV EYA   +K+ V+G+G  +K Q+
Sbjct: 63  YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 122

Query: 127 HMMLKMLM 134
             M++ L+
Sbjct: 123 QHMVRTLL 130


>gi|301631770|ref|XP_002944968.1| PREDICTED: uncharacterized protein aq_1259-like [Xenopus (Silurana)
           tropicalis]
          Length = 587

 Score =  108 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 60/135 (44%), Positives = 87/135 (64%), Gaps = 6/135 (4%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTI------VSCVRQSLAFRLCQLYEGLTD 58
           +RI+GIDPGL+ TG+G++DV G +L +V+SGTI       +     L  RL  L++G+T+
Sbjct: 1   MRILGIDPGLQTTGFGVLDVQGQHLRYVASGTIRTTGAGAAPALGDLPGRLKLLFDGITE 60

Query: 59  VIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGV 118
           V   ++P+ AAVE VFVN +  +TL LGQAR  A+ +   AR+PV+EY    +KKAV+G 
Sbjct: 61  VAARYQPDTAAVEIVFVNVNPQSTLLLGQARGAALTALVNARLPVAEYTALQMKKAVVGH 120

Query: 119 GHGDKKQIHMMLKML 133
           G   K Q+  M  +L
Sbjct: 121 GRAAKAQVQEMRALL 135


>gi|34499680|ref|NP_903895.1| Holliday junction resolvase [Chromobacterium violaceum ATCC 12472]
 gi|44888389|sp|Q7NQB5|RUVC_CHRVO RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|34105531|gb|AAQ61885.1| crossover junction endodeoxyribonuclease [Chromobacterium violaceum
           ATCC 12472]
          Length = 176

 Score =  108 bits (271), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 69/163 (42%), Positives = 101/163 (61%)

Query: 4   SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           S RI+GIDPG   TG+G++DV G+   +V+SG I +     LA R+  L +G+  VI  +
Sbjct: 2   SRRILGIDPGSLITGFGVIDVVGNQRHYVASGAIRTKSGSPLAERVKVLVDGIHQVIDTY 61

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RP EAA+E+VFVN +  ATL LGQAR   + +  L  +PV+EY    +K++V+G G   K
Sbjct: 62  RPTEAALERVFVNVNPAATLMLGQARGACMTALVLKDLPVAEYTALQVKQSVVGQGKAPK 121

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
           +Q+  M+  ++  S     DAADALA+A+ HA H+     K+A
Sbjct: 122 EQVQYMVVRMLNLSGTPQADAADALAVALTHANHSGGAIGKLA 164


>gi|110833612|ref|YP_692471.1| endonuclease RuvC [Alcanivorax borkumensis SK2]
 gi|123149640|sp|Q0VRJ9|RUVC_ALCBS RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|110646723|emb|CAL16199.1| endonuclease RuvC [Alcanivorax borkumensis SK2]
          Length = 172

 Score =  108 bits (271), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 66/150 (44%), Positives = 100/150 (66%), Gaps = 1/150 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG RRTG+G+VDV G+    V+ GTI +   + +  RL +++ G+  V+K + P 
Sbjct: 4   ILGIDPGSRRTGYGVVDVVGNRSRAVAFGTITTS-HKEIPPRLGEIFAGIDQVVKEYGPA 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E ++E+VF+ ++A + LKLGQAR  AI +   A +PV EY+   +K+AV+G G  +K Q+
Sbjct: 63  EVSIEKVFMARNADSALKLGQARGAAIAAVMQACVPVFEYSARQVKQAVVGKGGAEKNQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAY 156
             M+K L+       +DAADALAIA+CHA+
Sbjct: 123 GEMVKYLLKLDQRPQEDAADALAIALCHAH 152


>gi|282599693|ref|ZP_05971509.2| crossover junction endodeoxyribonuclease RuvC [Providencia
           rustigianii DSM 4541]
 gi|282568251|gb|EFB73786.1| crossover junction endodeoxyribonuclease RuvC [Providencia
           rustigianii DSM 4541]
          Length = 181

 Score =  108 bits (271), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 54/131 (41%), Positives = 86/131 (65%), Gaps = 1/131 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I + V   L  RL ++Y G++++I  ++P+
Sbjct: 12  ILGIDPGSRITGYGVIRQQGRQLLYLGSGCIRTQV-DDLPSRLQRIYAGVSEIITQYQPD 70

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             ++EQVF+ K+A + LKLGQAR +AI++ A   IPV EYA   +K+ V+G G  +K Q+
Sbjct: 71  VLSIEQVFMAKNADSALKLGQARGVAIVAAANQNIPVFEYAARQVKQTVVGTGAAEKSQV 130

Query: 127 HMMLKMLMPES 137
             M+K ++  S
Sbjct: 131 QHMVKSILKLS 141


>gi|16760848|ref|NP_456465.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|16765240|ref|NP_460855.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|29141460|ref|NP_804802.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|56413183|ref|YP_150258.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|167994199|ref|ZP_02575291.1| crossover junction endodeoxyribonuclease RuvC [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168234040|ref|ZP_02659098.1| crossover junction endodeoxyribonuclease RuvC [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|168238528|ref|ZP_02663586.1| crossover junction endodeoxyribonuclease RuvC [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|168241527|ref|ZP_02666459.1| crossover junction endodeoxyribonuclease RuvC [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|168462570|ref|ZP_02696501.1| crossover junction endodeoxyribonuclease RuvC [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|168820722|ref|ZP_02832722.1| crossover junction endodeoxyribonuclease RuvC [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|194444872|ref|YP_002041163.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194448512|ref|YP_002045951.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194471832|ref|ZP_03077816.1| crossover junction endodeoxyribonuclease RuvC [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|194736889|ref|YP_002114933.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197249729|ref|YP_002146124.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197264932|ref|ZP_03165006.1| crossover junction endodeoxyribonuclease RuvC [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|197362109|ref|YP_002141746.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|204931047|ref|ZP_03221873.1| crossover junction endodeoxyribonuclease RuvC [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|205352396|ref|YP_002226197.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|207856581|ref|YP_002243232.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|213162202|ref|ZP_03347912.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213426401|ref|ZP_03359151.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213649296|ref|ZP_03379349.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
 gi|238912042|ref|ZP_04655879.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
 gi|289808364|ref|ZP_06538993.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
 gi|289824026|ref|ZP_06543624.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
 gi|54039582|sp|P66763|RUVC_SALTI RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|54042209|sp|P66762|RUVC_SALTY RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|81599838|sp|Q5PN00|RUVC_SALPA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|226698763|sp|B5F3J2|RUVC_SALA4 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|226698765|sp|B5R1V5|RUVC_SALEP RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|226698766|sp|B5R8D9|RUVC_SALG2 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|238689769|sp|B4TYS1|RUVC_SALSV RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|238690745|sp|B5BH57|RUVC_SALPK RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|238693527|sp|B4SVE8|RUVC_SALNS RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|238693637|sp|B4T7Z6|RUVC_SALHS RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|25321119|pir||AF0743 crossover junction endodeoxyribonuclease [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16420434|gb|AAL20814.1| Holliday junction nuclease [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|16503145|emb|CAD05649.1| crossover junction endodeoxyribonuclease [Salmonella enterica
           subsp. enterica serovar Typhi]
 gi|29137087|gb|AAO68651.1| crossover junction endodeoxyribonuclease [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
 gi|56127440|gb|AAV76946.1| crossover junction endodeoxyribonuclease [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|194403535|gb|ACF63757.1| crossover junction endodeoxyribonuclease RuvC [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194406816|gb|ACF67035.1| crossover junction endodeoxyribonuclease RuvC [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|194458196|gb|EDX47035.1| crossover junction endodeoxyribonuclease RuvC [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|194712391|gb|ACF91612.1| crossover junction endodeoxyribonuclease RuvC [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|195634247|gb|EDX52599.1| crossover junction endodeoxyribonuclease RuvC [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|197093586|emb|CAR59049.1| crossover junction endodeoxyribonuclease [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|197213432|gb|ACH50829.1| crossover junction endodeoxyribonuclease RuvC [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197243187|gb|EDY25807.1| crossover junction endodeoxyribonuclease RuvC [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|197288682|gb|EDY28057.1| crossover junction endodeoxyribonuclease RuvC [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|204320091|gb|EDZ05296.1| crossover junction endodeoxyribonuclease RuvC [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|205272177|emb|CAR37035.1| crossover junction endodeoxyribonuclease [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|205327886|gb|EDZ14650.1| crossover junction endodeoxyribonuclease RuvC [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205331988|gb|EDZ18752.1| crossover junction endodeoxyribonuclease RuvC [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|205339451|gb|EDZ26215.1| crossover junction endodeoxyribonuclease RuvC [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|205342603|gb|EDZ29367.1| crossover junction endodeoxyribonuclease RuvC [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|206708384|emb|CAR32688.1| crossover junction endodeoxyribonuclease [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|261247068|emb|CBG24889.1| Crossover junction endodeoxyribonuclease ruvC [Salmonella enterica
           subsp. enterica serovar Typhimurium str. D23580]
 gi|267993881|gb|ACY88766.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301158418|emb|CBW17927.1| Crossover junction endodeoxyribonuclease ruvC [Salmonella enterica
           subsp. enterica serovar Typhimurium str. SL1344]
 gi|312912892|dbj|BAJ36866.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|320085484|emb|CBY95265.1| crossover junction endodeoxyribonuclease [Salmonella enterica
           subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|321224542|gb|EFX49605.1| Crossover junction endodeoxyribonuclease RuvC [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|322616898|gb|EFY13806.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322618136|gb|EFY15028.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322625807|gb|EFY22626.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322626259|gb|EFY23069.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322632673|gb|EFY29418.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322639017|gb|EFY35710.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322640457|gb|EFY37110.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322644222|gb|EFY40767.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322649544|gb|EFY45976.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322655452|gb|EFY51760.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322660231|gb|EFY56469.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322662912|gb|EFY59119.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322668097|gb|EFY64256.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322674143|gb|EFY70237.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322675503|gb|EFY71577.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322683083|gb|EFY79099.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322686777|gb|EFY82755.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323130182|gb|ADX17612.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|323195332|gb|EFZ80512.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323199224|gb|EFZ84319.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323204051|gb|EFZ89066.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323207480|gb|EFZ92428.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323210665|gb|EFZ95543.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323217464|gb|EGA02183.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323221955|gb|EGA06345.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323224435|gb|EGA08723.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323231486|gb|EGA15599.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323235928|gb|EGA20007.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323240498|gb|EGA24541.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323245390|gb|EGA29390.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323247810|gb|EGA31748.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323253609|gb|EGA37437.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323255038|gb|EGA38826.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323260271|gb|EGA43892.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323266862|gb|EGA50348.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323269068|gb|EGA52524.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
 gi|326627448|gb|EGE33791.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
 gi|332988791|gb|AEF07774.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 173

 Score =  108 bits (271), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 53/128 (41%), Positives = 84/128 (65%), Gaps = 1/128 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I + V   L  RL  +Y G+T++I  ++P+
Sbjct: 4   ILGIDPGSRITGYGVIRQVGRQLTYLGSGCIRTKV-DDLPSRLKLIYAGVTEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR +AI++     +PV EYA   +K+ V+G+G  +K Q+
Sbjct: 63  YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 122

Query: 127 HMMLKMLM 134
             M++ L+
Sbjct: 123 QHMVRTLL 130


>gi|260550052|ref|ZP_05824266.1| crossover junction endodeoxyribonuclease RuvC [Acinetobacter sp.
           RUH2624]
 gi|260406807|gb|EEX00286.1| crossover junction endodeoxyribonuclease RuvC [Acinetobacter sp.
           RUH2624]
          Length = 181

 Score =  108 bits (271), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/160 (43%), Positives = 101/160 (63%), Gaps = 2/160 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           IIGIDPG R TG+GI++  G  L FV +GTI +   Q +  RL +++ G+  ++K   P 
Sbjct: 4   IIGIDPGSRLTGYGIIEKDGSKLRFVDAGTIRTET-QEMPERLKRIFAGVERIVKFHGPT 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           EAAVEQVF+ ++  + LKLGQAR  AI +     + V+EY    IK++V+G G  DK+Q+
Sbjct: 63  EAAVEQVFMAQNPDSALKLGQARGAAIAALVNLDLQVAEYTARQIKQSVVGYGAADKEQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
            MM+  L+  +     DAADALA A+CHA HA+    K++
Sbjct: 123 QMMVMRLLNLTIKPQADAADALAAAICHA-HASGSMSKLS 161


>gi|224583597|ref|YP_002637395.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|254767484|sp|C0Q2F1|RUVC_SALPC RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|224468124|gb|ACN45954.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|322714951|gb|EFZ06522.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
          Length = 173

 Score =  108 bits (271), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 53/128 (41%), Positives = 84/128 (65%), Gaps = 1/128 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I + V   L  RL  +Y G+T++I  ++P+
Sbjct: 4   ILGIDPGSRITGYGVIRQVGRQLTYLGSGCIRTKV-DDLPSRLKLIYAGVTEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR +AI++     +PV EYA   +K+ V+G+G  +K Q+
Sbjct: 63  YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 122

Query: 127 HMMLKMLM 134
             M++ L+
Sbjct: 123 QHMVRTLL 130


>gi|157964183|ref|YP_001499007.1| Holliday junction resolvase [Rickettsia massiliae MTU5]
 gi|157843959|gb|ABV84460.1| Crossover junction endodeoxyribonuclease RuvC [Rickettsia massiliae
           MTU5]
          Length = 159

 Score =  108 bits (271), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 57/146 (39%), Positives = 85/146 (58%), Gaps = 1/146 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDP L   GW +V      L +++SG I +  + ++  RL  +   L  VI  ++P 
Sbjct: 5   ILGIDPALGSLGWAVVAKETAQLKYLASGIIKTNSKDAIHHRLAFINSTLEKVILEYQPN 64

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
            AA+E+ FVN ++V +LKLG AR   +       + + E+ PNT+KK V G GH +K QI
Sbjct: 65  MAAIEETFVNTNSVTSLKLGYARGAIMSLIGRYNLDMREFKPNTVKKTVTGYGHAEKDQI 124

Query: 127 HMMLKMLMPESFF-KGKDAADALAIA 151
             M+K+L+P +F     D ADA+AIA
Sbjct: 125 LHMIKLLLPGTFLITNSDEADAVAIA 150


>gi|213024295|ref|ZP_03338742.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 135

 Score =  108 bits (271), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 53/128 (41%), Positives = 84/128 (65%), Gaps = 1/128 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I + V   L  RL  +Y G+T++I  ++P+
Sbjct: 4   ILGIDPGSRITGYGVIRQVGRQLTYLGSGCIRTKV-DDLPSRLKLIYAGVTEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR +AI++     +PV EYA   +K+ V+G+G  +K Q+
Sbjct: 63  YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 122

Query: 127 HMMLKMLM 134
             M++ L+
Sbjct: 123 QHMVRTLL 130


>gi|206577404|ref|YP_002237746.1| crossover junction endodeoxyribonuclease RuvC [Klebsiella
           pneumoniae 342]
 gi|288934604|ref|YP_003438663.1| crossover junction endodeoxyribonuclease RuvC [Klebsiella variicola
           At-22]
 gi|290508805|ref|ZP_06548176.1| crossover junction endodeoxyribonuclease RuvC [Klebsiella sp.
           1_1_55]
 gi|226698758|sp|B5XQ03|RUVC_KLEP3 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|206566462|gb|ACI08238.1| crossover junction endodeoxyribonuclease RuvC [Klebsiella
           pneumoniae 342]
 gi|288889313|gb|ADC57631.1| crossover junction endodeoxyribonuclease RuvC [Klebsiella variicola
           At-22]
 gi|289778199|gb|EFD86196.1| crossover junction endodeoxyribonuclease RuvC [Klebsiella sp.
           1_1_55]
          Length = 173

 Score =  108 bits (271), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 53/128 (41%), Positives = 84/128 (65%), Gaps = 1/128 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I + V   L  RL  +Y G+T++I  ++P+
Sbjct: 4   ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKV-DDLPSRLKLIYAGVTEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR +AI++     +PV EYA   +K+ V+G+G  +K Q+
Sbjct: 63  YFAIEQVFMAKNADSALKLGQARGVAIVAATNQSLPVFEYAARQVKQTVVGIGSAEKSQV 122

Query: 127 HMMLKMLM 134
             M++ L+
Sbjct: 123 QHMVRTLL 130


>gi|283785601|ref|YP_003365466.1| crossover junction endodeoxyribonuclease [Citrobacter rodentium
           ICC168]
 gi|282949055|emb|CBG88658.1| crossover junction endodeoxyribonuclease [Citrobacter rodentium
           ICC168]
          Length = 174

 Score =  108 bits (271), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 53/128 (41%), Positives = 84/128 (65%), Gaps = 1/128 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I + V   L  RL  +Y G+T++I  ++P+
Sbjct: 5   ILGIDPGSRVTGYGVIRQVGRQLTYLGSGCIRTKV-DDLPSRLKLIYAGVTEIITQFQPD 63

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR +AI++     +PV EYA   +K+ V+G+G  +K Q+
Sbjct: 64  YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQSLPVFEYAARQVKQTVVGIGSAEKSQV 123

Query: 127 HMMLKMLM 134
             M++ L+
Sbjct: 124 QHMVRTLL 131


>gi|320174358|gb|EFW49507.1| Crossover junction endodeoxyribonuclease RuvC [Shigella dysenteriae
           CDC 74-1112]
          Length = 173

 Score =  108 bits (271), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 53/128 (41%), Positives = 84/128 (65%), Gaps = 1/128 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I + V   L  RL  +Y G+T++I  ++P+
Sbjct: 4   ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKV-DDLPSRLKLIYAGVTEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR +AI++     +PV EYA   +K+ V+G+G  +K Q+
Sbjct: 63  YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 122

Query: 127 HMMLKMLM 134
             M++ L+
Sbjct: 123 QHMVRTLL 130


>gi|169633696|ref|YP_001707432.1| Holliday junction resolvase [Acinetobacter baumannii SDF]
 gi|169796193|ref|YP_001713986.1| Holliday junction resolvase [Acinetobacter baumannii AYE]
 gi|184157877|ref|YP_001846216.1| Holliday junction resolvase [Acinetobacter baumannii ACICU]
 gi|213157073|ref|YP_002319118.1| crossover junction endodeoxyribonuclease RuvC [Acinetobacter
           baumannii AB0057]
 gi|215483648|ref|YP_002325869.1| crossover junction endodeoxyribonuclease RuvC [Acinetobacter
           baumannii AB307-0294]
 gi|239502245|ref|ZP_04661555.1| Holliday junction resolvase [Acinetobacter baumannii AB900]
 gi|260555244|ref|ZP_05827465.1| crossover junction endodeoxyribonuclease RuvC [Acinetobacter
           baumannii ATCC 19606]
 gi|301347625|ref|ZP_07228366.1| Holliday junction resolvase [Acinetobacter baumannii AB056]
 gi|301510310|ref|ZP_07235547.1| Holliday junction resolvase [Acinetobacter baumannii AB058]
 gi|301596868|ref|ZP_07241876.1| Holliday junction resolvase [Acinetobacter baumannii AB059]
 gi|332850550|ref|ZP_08432826.1| crossover junction endodeoxyribonuclease RuvC [Acinetobacter
           baumannii 6013150]
 gi|332865760|ref|ZP_08436555.1| crossover junction endodeoxyribonuclease RuvC [Acinetobacter
           baumannii 6013113]
 gi|332872519|ref|ZP_08440489.1| crossover junction endodeoxyribonuclease RuvC [Acinetobacter
           baumannii 6014059]
 gi|226725465|sp|B7H3S1|RUVC_ACIB3 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|226725466|sp|B7I4I7|RUVC_ACIB5 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|238685510|sp|A3M4U7|RUVC_ACIBT RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|238688095|sp|B0VCA5|RUVC_ACIBY RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|238688243|sp|B0VR37|RUVC_ACIBS RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|238690999|sp|B2HYY2|RUVC_ACIBC RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|169149120|emb|CAM86997.1| holliday junction nuclease [Acinetobacter baumannii AYE]
 gi|169152488|emb|CAP01456.1| holliday junction nuclease [Acinetobacter baumannii]
 gi|183209471|gb|ACC56869.1| Holliday junction resolvasome, endonuclease subunit [Acinetobacter
           baumannii ACICU]
 gi|193077159|gb|ABO11941.2| holliday junction nuclease [Acinetobacter baumannii ATCC 17978]
 gi|213056233|gb|ACJ41135.1| crossover junction endodeoxyribonuclease RuvC [Acinetobacter
           baumannii AB0057]
 gi|213987249|gb|ACJ57548.1| crossover junction endodeoxyribonuclease RuvC [Acinetobacter
           baumannii AB307-0294]
 gi|260411786|gb|EEX05083.1| crossover junction endodeoxyribonuclease RuvC [Acinetobacter
           baumannii ATCC 19606]
 gi|322508194|gb|ADX03648.1| ruvC [Acinetobacter baumannii 1656-2]
 gi|323517282|gb|ADX91663.1| Holliday junction resolvase [Acinetobacter baumannii TCDC-AB0715]
 gi|323517794|gb|ADX92175.1| Holliday junction resolvase [Acinetobacter baumannii TCDC-AB0715]
 gi|332730612|gb|EGJ61926.1| crossover junction endodeoxyribonuclease RuvC [Acinetobacter
           baumannii 6013150]
 gi|332735101|gb|EGJ66185.1| crossover junction endodeoxyribonuclease RuvC [Acinetobacter
           baumannii 6013113]
 gi|332739325|gb|EGJ70182.1| crossover junction endodeoxyribonuclease RuvC [Acinetobacter
           baumannii 6014059]
          Length = 181

 Score =  108 bits (271), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 68/154 (44%), Positives = 98/154 (63%), Gaps = 1/154 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           IIGIDPG R TG+GI++  G  L FV +GTI +   Q +  RL +++ G+  ++K   P 
Sbjct: 4   IIGIDPGSRLTGYGIIEKDGSKLRFVDAGTIRTET-QEMPERLKRIFAGVERIVKFHGPT 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           EAAVEQVF+ ++  + LKLGQAR  AI +     + V+EY    IK++V+G G  DK+Q+
Sbjct: 63  EAAVEQVFMAQNPDSALKLGQARGAAIAALVNLDLQVAEYTARQIKQSVVGYGAADKEQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
            MM+  L+  +     DAADALA A+CHA+ + S
Sbjct: 123 QMMVMRLLNLTIKPQADAADALAAAICHAHASGS 156


>gi|187611517|sp|A8F0M4|RUVC_RICM5 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
          Length = 157

 Score =  108 bits (271), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 57/146 (39%), Positives = 85/146 (58%), Gaps = 1/146 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDP L   GW +V      L +++SG I +  + ++  RL  +   L  VI  ++P 
Sbjct: 3   ILGIDPALGSLGWAVVAKETAQLKYLASGIIKTNSKDAIHHRLAFINSTLEKVILEYQPN 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
            AA+E+ FVN ++V +LKLG AR   +       + + E+ PNT+KK V G GH +K QI
Sbjct: 63  MAAIEETFVNTNSVTSLKLGYARGAIMSLIGRYNLDMREFKPNTVKKTVTGYGHAEKDQI 122

Query: 127 HMMLKMLMPESFF-KGKDAADALAIA 151
             M+K+L+P +F     D ADA+AIA
Sbjct: 123 LHMIKLLLPGTFLITNSDEADAVAIA 148


>gi|208779420|ref|ZP_03246766.1| crossover junction endodeoxyribonuclease RuvC [Francisella novicida
           FTG]
 gi|208745220|gb|EDZ91518.1| crossover junction endodeoxyribonuclease RuvC [Francisella novicida
           FTG]
          Length = 171

 Score =  108 bits (271), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 68/163 (41%), Positives = 107/163 (65%), Gaps = 8/163 (4%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQS---LAFRLCQLYEGLTDVIKNW 63
           I+GIDPG R TG+G++ V  + + +V+SG    C+R +    A RL Q+ +G+T +I  +
Sbjct: 3   ILGIDPGSRITGFGVIKVQDNKIYYVASG----CIRITEITTAKRLKQIADGITQIINIY 58

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P EAA+EQ+F+ ++ +  +KLGQAR +A+ + A+  + VSEY+   IK+AV+G G   K
Sbjct: 59  APTEAAIEQIFMFQNPMGAIKLGQARGVAMCTLAINNLEVSEYSAKQIKQAVVGTGGAAK 118

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
            Q+  M++ L+  S    +DAADALAIA+CH YH++    KI+
Sbjct: 119 SQVQHMVQSLLGLSKKPPEDAADALAIAICH-YHSSKSLAKIS 160


>gi|227329530|ref|ZP_03833554.1| Holliday junction resolvase [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 173

 Score =  108 bits (271), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 55/131 (41%), Positives = 85/131 (64%), Gaps = 1/131 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+GI+   G +L ++ SG I + V   +  RL  +Y G++++I  +RP+
Sbjct: 4   IVGIDPGSRVTGYGIIRQQGRHLTYLGSGCIRTVV-DDMPTRLKLIYAGVSEIITQFRPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+  + LKLGQAR +AI++     +PV EYA   +K+ V+G G  DKKQ+
Sbjct: 63  CMAIEQVFMAKNPDSALKLGQARGVAIVAGVNQDLPVFEYAARLVKQTVVGTGAADKKQV 122

Query: 127 HMMLKMLMPES 137
             M++ L+  S
Sbjct: 123 QHMVRSLLKLS 133


>gi|257095743|ref|YP_003169384.1| crossover junction endodeoxyribonuclease RuvC [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257048267|gb|ACV37455.1| crossover junction endodeoxyribonuclease RuvC [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 184

 Score =  108 bits (271), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 67/161 (41%), Positives = 101/161 (62%), Gaps = 1/161 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+G+DPGLR TG+G++   G+ L +++SG I +  + SL  RL  ++  L +++   +
Sbjct: 9   LRILGVDPGLRITGFGLIAKMGNRLGYLASGCIRTDAKASLPARLGTIHAALRELVAEHQ 68

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P++AAVE VFVN +  +TL LGQAR  AI     + + V+EY    IK+AV+G GH DK 
Sbjct: 69  PDQAAVEIVFVNVNPQSTLLLGQARGAAITGLVSSGLEVAEYTALQIKQAVVGNGHADKL 128

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
           Q+  M++ L+  S     DAADALA A+ HA H   G  ++
Sbjct: 129 QVQHMVRRLLSLSADPSPDAADALACAIAHA-HGGQGLGRL 168


>gi|220928771|ref|YP_002505680.1| Holliday junction resolvase [Clostridium cellulolyticum H10]
 gi|254767467|sp|B8I1A2|RUVC_CLOCE RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|219999099|gb|ACL75700.1| crossover junction endodeoxyribonuclease RuvC [Clostridium
           cellulolyticum H10]
          Length = 166

 Score =  108 bits (271), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 52/149 (34%), Positives = 85/149 (57%), Gaps = 1/149 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG   TG+G+V   G+    +    I +      + RL  LY  L  +I  +RP+
Sbjct: 3   IMGIDPGFAITGYGVVKYEGNKFSVLDYNAITTVASMKFSDRLLVLYNELEKLINKFRPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             ++E++F NK+    L +G  R +A+L+ A + I + EY P  +K++V+G G  +K Q+
Sbjct: 63  AISIEELFFNKNIKTALTVGHGRGVAVLAAAKSGIDIFEYTPLQVKQSVVGYGRAEKAQV 122

Query: 127 HMMLKMLMP-ESFFKGKDAADALAIAVCH 154
             M+K ++   +  K  D ADALA+A+CH
Sbjct: 123 QQMVKAILNLPAIPKPDDVADALAVAICH 151


>gi|161502988|ref|YP_001570100.1| Holliday junction resolvase [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|189046077|sp|A9MND5|RUVC_SALAR RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|160864335|gb|ABX20958.1| hypothetical protein SARI_01050 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 173

 Score =  108 bits (271), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 53/128 (41%), Positives = 84/128 (65%), Gaps = 1/128 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I + V   L  RL  +Y G+T++I  ++P+
Sbjct: 4   ILGIDPGSRITGYGVIRQVGRQLTYLGSGCIRTKV-DDLPSRLKLIYAGVTEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR +AI++     +PV EYA   +K+ V+G+G  +K Q+
Sbjct: 63  YFAIEQVFMAKNADSALKLGQARGVAIVAAVNRELPVFEYAARQVKQTVVGIGSAEKSQV 122

Query: 127 HMMLKMLM 134
             M++ L+
Sbjct: 123 QHMVRTLL 130


>gi|152970924|ref|YP_001336033.1| Holliday junction resolvase [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|262041979|ref|ZP_06015161.1| crossover junction endodeoxyribonuclease RuvC [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
 gi|330001141|ref|ZP_08303908.1| crossover junction endodeoxyribonuclease RuvC [Klebsiella sp. MS
           92-3]
 gi|166233200|sp|A6TB32|RUVC_KLEP7 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|150955773|gb|ABR77803.1| Holliday junction resolvase [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|259040677|gb|EEW41766.1| crossover junction endodeoxyribonuclease RuvC [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
 gi|328537787|gb|EGF63986.1| crossover junction endodeoxyribonuclease RuvC [Klebsiella sp. MS
           92-3]
          Length = 173

 Score =  108 bits (271), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 53/128 (41%), Positives = 84/128 (65%), Gaps = 1/128 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I + V   L  RL  +Y G+T++I  ++P+
Sbjct: 4   ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKV-DDLPSRLKLIYAGVTEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR +AI++     +PV EYA   +K+ V+G+G  +K Q+
Sbjct: 63  YFAIEQVFMAKNADSALKLGQARGVAIVAATNQALPVFEYAARQVKQTVVGIGSAEKSQV 122

Query: 127 HMMLKMLM 134
             M++ L+
Sbjct: 123 QHMVRTLL 130


>gi|227111609|ref|ZP_03825265.1| Holliday junction resolvase [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 173

 Score =  108 bits (271), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 55/131 (41%), Positives = 85/131 (64%), Gaps = 1/131 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+GI+   G +L ++ SG I + V   +  RL  +Y G++++I  +RP+
Sbjct: 4   IVGIDPGSRVTGYGIIRQQGRHLTYLGSGCIRTVV-DDMPTRLKLIYAGVSEIITQFRPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+  + LKLGQAR +AI++     +PV EYA   +K+ V+G G  DKKQ+
Sbjct: 63  CMAIEQVFMAKNPDSALKLGQARGVAIVAGVNQDLPVFEYAARLVKQTVVGTGAADKKQV 122

Query: 127 HMMLKMLMPES 137
             M++ L+  S
Sbjct: 123 QHMVRSLLKLS 133


>gi|168700080|ref|ZP_02732357.1| crossover junction endodeoxyribonuclease ruvC [Gemmata
           obscuriglobus UQM 2246]
          Length = 211

 Score =  108 bits (271), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 62/161 (38%), Positives = 97/161 (60%), Gaps = 5/161 (3%)

Query: 6   RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCV-RQS--LAFRLCQLYEGLTDVIKN 62
           RI+GIDPGL+ TG+G+++V+      V +G I S   R S  +A R+  LY+GL++V+  
Sbjct: 13  RILGIDPGLQTTGYGVLEVSDKGPRVVDAGVIRSADGRDSSDMARRVKALYDGLSEVLGE 72

Query: 63  WRPEEAAVEQVFVNKDAVAT-LKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
           W+P   A+EQ++ + D   T + +  AR + +L+ A   IPV+ YAP  +KK V G GH 
Sbjct: 73  WKPAALAIEQLYAHYDHPRTAILMAHARGVYLLAAAQHSIPVTSYAPTKVKKLVTGHGHA 132

Query: 122 DKKQI-HMMLKMLMPESFFKGKDAADALAIAVCHAYHANSG 161
            K+Q+ + +++ L      +  D ADAL IA+CH +   SG
Sbjct: 133 VKEQMQYAVMRELNLAKLPEPHDVADALGIALCHYFATGSG 173


>gi|253688205|ref|YP_003017395.1| crossover junction endodeoxyribonuclease RuvC [Pectobacterium
           carotovorum subsp. carotovorum PC1]
 gi|259495690|sp|C6DFF0|RUVC_PECCP RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|251754783|gb|ACT12859.1| crossover junction endodeoxyribonuclease RuvC [Pectobacterium
           carotovorum subsp. carotovorum PC1]
          Length = 173

 Score =  108 bits (270), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 55/131 (41%), Positives = 85/131 (64%), Gaps = 1/131 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+GI+   G +L ++ SG I + V   +  RL  +Y G++++I  +RP+
Sbjct: 4   IVGIDPGSRVTGYGIIRQQGRHLTYLGSGCIRTVV-DDMPTRLKLIYAGVSEIITQFRPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+  + LKLGQAR +AI++     +PV EYA   +K+ V+G G  DKKQ+
Sbjct: 63  CMAIEQVFMAKNPDSALKLGQARGVAIVAGVNQDLPVFEYAARLVKQTVVGTGAADKKQV 122

Query: 127 HMMLKMLMPES 137
             M++ L+  S
Sbjct: 123 QHMVRSLLKLS 133


>gi|238895439|ref|YP_002920174.1| Holliday junction resolvase [Klebsiella pneumoniae NTUH-K2044]
 gi|238547756|dbj|BAH64107.1| Holliday junction resolvase [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 174

 Score =  108 bits (270), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 53/128 (41%), Positives = 84/128 (65%), Gaps = 1/128 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I + V   L  RL  +Y G+T++I  ++P+
Sbjct: 5   ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKV-DDLPSRLKLIYAGVTEIITQFQPD 63

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR +AI++     +PV EYA   +K+ V+G+G  +K Q+
Sbjct: 64  YFAIEQVFMAKNADSALKLGQARGVAIVAATNQALPVFEYAARQVKQTVVGIGSAEKSQV 123

Query: 127 HMMLKMLM 134
             M++ L+
Sbjct: 124 QHMVRTLL 131


>gi|333003474|gb|EGK23017.1| crossover junction endodeoxyribonuclease RuvC [Shigella flexneri
           VA-6]
          Length = 173

 Score =  108 bits (270), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 53/128 (41%), Positives = 84/128 (65%), Gaps = 1/128 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I + V   L  RL  +Y G+T++I  ++P+
Sbjct: 4   ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKV-DDLPSRLKLIYAGVTEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR +AI++     +PV EYA   +K+ V+G+G  +K Q+
Sbjct: 63  YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGMGSAEKSQV 122

Query: 127 HMMLKMLM 134
             M++ L+
Sbjct: 123 QHMVRTLL 130


>gi|302344656|ref|YP_003809185.1| crossover junction endodeoxyribonuclease RuvC [Desulfarculus
           baarsii DSM 2075]
 gi|301641269|gb|ADK86591.1| crossover junction endodeoxyribonuclease RuvC [Desulfarculus
           baarsii DSM 2075]
          Length = 168

 Score =  108 bits (270), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 61/151 (40%), Positives = 98/151 (64%), Gaps = 1/151 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAG-DNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPG +RTG+G+V         FV++G I +    +  +RL ++++ L  VI+  
Sbjct: 6   VRVLGLDPGSQRTGYGLVQAGPRGRAVFVAAGVISAPASLAPPWRLRKIHQELCQVIERR 65

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +P E AVE VF  ++A   + LGQAR +A+L+ A A + V EY+P  +KKA+ GVG  DK
Sbjct: 66  QPLEMAVEGVFAAQNARTAIMLGQARGVALLAAAQAGLEVFEYSPAAVKKALTGVGRADK 125

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCH 154
           +Q+  M+++++      G DA+DALAIA+CH
Sbjct: 126 EQVQRMVRVVLGVEEPLGLDASDALAIAICH 156


>gi|291557650|emb|CBL34767.1| crossover junction endodeoxyribonuclease RuvC [Eubacterium siraeum
           V10Sc8a]
          Length = 167

 Score =  108 bits (270), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 54/157 (34%), Positives = 86/157 (54%), Gaps = 1/157 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RIIGIDPG    G+G+VD           G I +        RLC++YE    ++ +W+
Sbjct: 1   MRIIGIDPGYAIVGFGVVDYIDGKFSVKDFGAITTDKDTPFPKRLCEIYEDYCQILDSWK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  ++E+++   +    + + QAR I I++ A   I ++EY P  +K+AV+G G   KK
Sbjct: 61  PDALSIERLYFTNNQKTGIDVAQARGIIIMAAAQRGIEINEYTPLQVKQAVVGYGQAVKK 120

Query: 125 QIHMMLKMLMPESFF-KGKDAADALAIAVCHAYHANS 160
           Q+  M K ++   F  K  D ADALA+ +CHA  + S
Sbjct: 121 QVQEMTKNILKLPFVPKPDDTADALAMTICHAQTSGS 157


>gi|30063273|ref|NP_837444.1| Holliday junction resolvase [Shigella flexneri 2a str. 2457T]
 gi|56479977|ref|NP_707723.2| Holliday junction resolvase [Shigella flexneri 2a str. 301]
 gi|110805807|ref|YP_689327.1| Holliday junction resolvase [Shigella flexneri 5 str. 8401]
 gi|44888402|sp|Q7UAE7|RUVC_SHIFL RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|123048149|sp|Q0T3U3|RUVC_SHIF8 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|30041525|gb|AAP17253.1| Holliday junction nuclease [Shigella flexneri 2a str. 2457T]
 gi|56383528|gb|AAN43430.2| Holliday junction nuclease [Shigella flexneri 2a str. 301]
 gi|110615355|gb|ABF04022.1| Holliday junction nuclease [Shigella flexneri 5 str. 8401]
 gi|281601278|gb|ADA74262.1| Crossover junction endodeoxyribonuclease ruvC [Shigella flexneri
           2002017]
 gi|313650641|gb|EFS15043.1| crossover junction endodeoxyribonuclease RuvC [Shigella flexneri 2a
           str. 2457T]
 gi|332757622|gb|EGJ87955.1| crossover junction endodeoxyribonuclease RuvC [Shigella flexneri
           2747-71]
 gi|332758051|gb|EGJ88377.1| crossover junction endodeoxyribonuclease RuvC [Shigella flexneri
           K-671]
 gi|332766839|gb|EGJ97040.1| crossover junction endodeoxyribonuclease RuvC [Shigella flexneri
           2930-71]
 gi|333004815|gb|EGK24337.1| crossover junction endodeoxyribonuclease RuvC [Shigella flexneri
           K-218]
 gi|333018587|gb|EGK37881.1| crossover junction endodeoxyribonuclease RuvC [Shigella flexneri
           K-304]
          Length = 173

 Score =  108 bits (270), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 53/128 (41%), Positives = 84/128 (65%), Gaps = 1/128 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I + V   L  RL  +Y G+T++I  ++P+
Sbjct: 4   ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKV-DDLPSRLKLIYAGVTEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR +AI++     +PV EYA   +K+ V+G+G  +K Q+
Sbjct: 63  YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGMGSAEKSQV 122

Query: 127 HMMLKMLM 134
             M++ L+
Sbjct: 123 QHMVRTLL 130


>gi|94986712|ref|YP_594645.1| Holliday junction resolvase [Lawsonia intracellularis PHE/MN1-00]
 gi|123262186|sp|Q1MRQ2|RUVC_LAWIP RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|94730961|emb|CAJ54324.1| Holliday junction resolvasome, endonuclease subunit [Lawsonia
           intracellularis PHE/MN1-00]
          Length = 168

 Score =  108 bits (270), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 58/150 (38%), Positives = 85/150 (56%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           I +IGIDPG R TGWGIV      L  V  G I      S A RL  +++ ++ +I  ++
Sbjct: 2   ISVIGIDPGSRNTGWGIVHEVSGVLHLVCCGVIQPSCNGSFAERLAHIFQEISSIIMKYK 61

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P EA+VEQVF  ++ +  LKLGQAR  A+++ A   + + +Y   TIKK ++G G   K+
Sbjct: 62  PVEASVEQVFTAQNPLTALKLGQARGAAVVACANQGLLIKDYEATTIKKTLVGHGRATKE 121

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCH 154
           Q+  M+   +        D +DALA A+CH
Sbjct: 122 QVSFMVGRSLGVKPDWPIDTSDALATAICH 151


>gi|237731900|ref|ZP_04562381.1| holliday junction resolvase [Citrobacter sp. 30_2]
 gi|283832739|ref|ZP_06352480.1| crossover junction endodeoxyribonuclease RuvC [Citrobacter youngae
           ATCC 29220]
 gi|226907439|gb|EEH93357.1| holliday junction resolvase [Citrobacter sp. 30_2]
 gi|291072422|gb|EFE10531.1| crossover junction endodeoxyribonuclease RuvC [Citrobacter youngae
           ATCC 29220]
          Length = 173

 Score =  108 bits (270), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 53/128 (41%), Positives = 84/128 (65%), Gaps = 1/128 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I + V   L  RL  +Y G+T++I  ++P+
Sbjct: 4   ILGIDPGSRITGYGVIRQVGRQLTYLGSGCIRTKV-DDLPSRLKLIYAGVTEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR +AI++     +PV EYA   +K+ V+G+G  +K Q+
Sbjct: 63  YFAIEQVFMAKNADSALKLGQARGVAIVAATNQDLPVFEYAARQVKQTVVGIGSAEKSQV 122

Query: 127 HMMLKMLM 134
             M++ L+
Sbjct: 123 QHMVRTLL 130


>gi|268589738|ref|ZP_06123959.1| crossover junction endodeoxyribonuclease RuvC [Providencia rettgeri
           DSM 1131]
 gi|291314890|gb|EFE55343.1| crossover junction endodeoxyribonuclease RuvC [Providencia rettgeri
           DSM 1131]
          Length = 173

 Score =  108 bits (270), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 54/131 (41%), Positives = 86/131 (65%), Gaps = 1/131 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I + V   L  RL ++Y G++++I  ++P+
Sbjct: 4   ILGIDPGSRVTGYGVIRQQGRQLLYLGSGCIRTQV-DDLPSRLQRIYAGVSEIITQYQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             ++EQVF+ K+A + LKLGQAR +AI++ A   IPV EYA   +K+ V+G G  +K Q+
Sbjct: 63  ILSIEQVFMAKNADSALKLGQARGVAIVAAANMNIPVFEYAARQVKQTVVGTGAAEKSQV 122

Query: 127 HMMLKMLMPES 137
             M+K ++  S
Sbjct: 123 QHMVKSILKLS 133


>gi|311279237|ref|YP_003941468.1| crossover junction endodeoxyribonuclease RuvC [Enterobacter cloacae
           SCF1]
 gi|308748432|gb|ADO48184.1| crossover junction endodeoxyribonuclease RuvC [Enterobacter cloacae
           SCF1]
          Length = 173

 Score =  108 bits (270), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 53/128 (41%), Positives = 84/128 (65%), Gaps = 1/128 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I + V   L  RL  +Y G+T++I  ++P+
Sbjct: 4   ILGIDPGSRVTGYGVIRQVGRQLTYLGSGCIRTKV-DDLPSRLKLIYAGVTEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR +AI++     +PV EYA   +K+ V+G+G  +K Q+
Sbjct: 63  YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQDLPVFEYAARQVKQTVVGIGSAEKSQV 122

Query: 127 HMMLKMLM 134
             M++ L+
Sbjct: 123 QHMVRTLL 130


>gi|157145358|ref|YP_001452677.1| Holliday junction resolvase [Citrobacter koseri ATCC BAA-895]
 gi|166233188|sp|A8AFH8|RUVC_CITK8 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|157082563|gb|ABV12241.1| hypothetical protein CKO_01098 [Citrobacter koseri ATCC BAA-895]
          Length = 173

 Score =  108 bits (270), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 53/128 (41%), Positives = 84/128 (65%), Gaps = 1/128 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I + V   L  RL  +Y G+T++I  ++P+
Sbjct: 4   ILGIDPGSRVTGYGVIRQVGRQLTYLGSGCIRTKV-DDLPSRLKLIYAGVTEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR +AI++     +PV EYA   +K+ V+G+G  +K Q+
Sbjct: 63  YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQDLPVFEYAARQVKQTVVGIGSAEKSQV 122

Query: 127 HMMLKMLM 134
             M++ L+
Sbjct: 123 QHMVRTLL 130


>gi|261821378|ref|YP_003259484.1| Holliday junction resolvase [Pectobacterium wasabiae WPP163]
 gi|261605391|gb|ACX87877.1| crossover junction endodeoxyribonuclease RuvC [Pectobacterium
           wasabiae WPP163]
          Length = 173

 Score =  108 bits (270), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 55/131 (41%), Positives = 84/131 (64%), Gaps = 1/131 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+GI+   G  L ++ SG I + V   +  RL  +Y G++++I  +RP+
Sbjct: 4   IVGIDPGSRVTGYGIIRQQGRQLTYLGSGCIRTVV-DDMPTRLKLIYAGVSEIITQFRPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+  + LKLGQAR +AI++     +PV EYA   +K+ V+G G  DKKQ+
Sbjct: 63  CMAIEQVFMAKNPDSALKLGQARGVAIVAGVNQDLPVFEYAARLVKQTVVGTGAADKKQV 122

Query: 127 HMMLKMLMPES 137
             M++ L+  S
Sbjct: 123 QHMVRSLLKLS 133


>gi|227499582|ref|ZP_03929689.1| crossover junction endodeoxyribonuclease [Anaerococcus tetradius
           ATCC 35098]
 gi|227218341|gb|EEI83595.1| crossover junction endodeoxyribonuclease [Anaerococcus tetradius
           ATCC 35098]
          Length = 164

 Score =  108 bits (270), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 88/150 (58%), Gaps = 1/150 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG+   G+GI++   + +  + +G + +  +     RL  LY+ L  +IK ++P+
Sbjct: 3   ILGIDPGIAIMGYGIIEFKENKVKVLENGVVTTSSKTKTGRRLELLYDNLHQIIKEFKPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E++F N +    + +G AR + +L      +P+ EY P  IK+A+ G G   K Q+
Sbjct: 63  EFAIEELFFNSNVKTAITVGHARGVQVLCAQQNMLPIYEYTPLQIKQAITGYGRASKSQM 122

Query: 127 HMML-KMLMPESFFKGKDAADALAIAVCHA 155
            + + ++L  +   K  DAADAL++A+CHA
Sbjct: 123 QLTVTRLLNLKEMPKPDDAADALSVALCHA 152


>gi|157825294|ref|YP_001493014.1| Holliday junction resolvase [Rickettsia akari str. Hartford]
 gi|166233292|sp|A8GM81|RUVC_RICAH RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|157799252|gb|ABV74506.1| Holliday junction resolvase [Rickettsia akari str. Hartford]
          Length = 157

 Score =  108 bits (270), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 58/150 (38%), Positives = 85/150 (56%), Gaps = 2/150 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           ++GIDP L   GW +V      L +++SG I +  +  +  RL  +   L  VI  ++P 
Sbjct: 3   VLGIDPALGSLGWAVVARQLTKLKYLASGIIKTNSKDEIHNRLACINSTLEKVILEYQPN 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
            AA+E+ FVN ++V +LKLG AR   +       + + E+ PNT+KK V G GH +K QI
Sbjct: 63  MAAIEETFVNTNSVTSLKLGYARGAIMSLCGRYNLDIREFKPNTVKKTVTGYGHAEKDQI 122

Query: 127 HMMLKMLMP-ESFFKGKDAADALAIA-VCH 154
             M+K+L+P  S     D ADA+AIA  CH
Sbjct: 123 LHMIKLLLPGTSLITNSDEADAIAIAYTCH 152


>gi|332090040|gb|EGI95140.1| crossover junction endodeoxyribonuclease RuvC [Shigella boydii
           5216-82]
          Length = 173

 Score =  108 bits (269), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 52/128 (40%), Positives = 84/128 (65%), Gaps = 1/128 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I + V   L  RL  +Y G+T++I  ++P+
Sbjct: 4   ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKV-DDLPSRLKLIYAGVTEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K++ + LKLGQAR +AI++     +PV EYA   +K+ V+G+G  +K Q+
Sbjct: 63  YFAIEQVFMAKNSDSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 122

Query: 127 HMMLKMLM 134
             M++ L+
Sbjct: 123 QHMVRTLL 130


>gi|262278863|ref|ZP_06056648.1| crossover junction endodeoxyribonuclease RuvC [Acinetobacter
           calcoaceticus RUH2202]
 gi|262259214|gb|EEY77947.1| crossover junction endodeoxyribonuclease RuvC [Acinetobacter
           calcoaceticus RUH2202]
          Length = 181

 Score =  108 bits (269), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 68/160 (42%), Positives = 102/160 (63%), Gaps = 2/160 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           IIGIDPG R TG+GI++  G  L F+ +GTI +  ++ +  RL +++ G+  ++K   P 
Sbjct: 4   IIGIDPGSRLTGYGIIEKDGSKLRFIDAGTIRTETKE-MPERLKRIFAGIERIVKFHGPT 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           EAAVEQVF+ ++  + LKLGQAR  AI +     + V+EY    IK++V+G G  DK+Q+
Sbjct: 63  EAAVEQVFMAQNPDSALKLGQARGAAIAALVNLDLQVAEYTARQIKQSVVGYGAADKEQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
            MM+  L+  +     DAADALA A+CHA HA+    K++
Sbjct: 123 QMMVMRLLNLTIKPQADAADALAAAICHA-HASGSMSKLS 161


>gi|302872059|ref|YP_003840695.1| crossover junction endodeoxyribonuclease RuvC [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302574918|gb|ADL42709.1| crossover junction endodeoxyribonuclease RuvC [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 166

 Score =  108 bits (269), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 56/162 (34%), Positives = 92/162 (56%), Gaps = 2/162 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++GIDPG+  TG+GI++   G     +  G I +      + R   LY  L  +I  +
Sbjct: 1   MRVLGIDPGIALTGYGIIESKNGSEFKVIDYGKIETSSSFKKSMRFLHLYTELCSIISLY 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +P+  A+E++F NK++   + +G+AR + IL+     + V EY P  +K+++ G G  DK
Sbjct: 61  QPDVVAIEELFFNKNSKTAITIGEARGVIILTCIQNNLSVYEYTPLQVKQSITGYGRADK 120

Query: 124 KQIHMMLKMLMPESFF-KGKDAADALAIAVCHAYHANSGYYK 164
            QI  M+K L+  S   K  D ADALA+A+CH   ++S  Y+
Sbjct: 121 TQIQKMVKSLLGLSEIPKPDDVADALAVAMCHILSSSSVLYQ 162


>gi|254976402|ref|ZP_05272874.1| crossover junction endodeoxyribonuclease RuvC [Clostridium
           difficile QCD-66c26]
 gi|255093788|ref|ZP_05323266.1| crossover junction endodeoxyribonuclease RuvC [Clostridium
           difficile CIP 107932]
 gi|255101978|ref|ZP_05330955.1| crossover junction endodeoxyribonuclease RuvC [Clostridium
           difficile QCD-63q42]
 gi|255307846|ref|ZP_05352017.1| crossover junction endodeoxyribonuclease RuvC [Clostridium
           difficile ATCC 43255]
 gi|255315539|ref|ZP_05357122.1| crossover junction endodeoxyribonuclease RuvC [Clostridium
           difficile QCD-76w55]
 gi|255518202|ref|ZP_05385878.1| crossover junction endodeoxyribonuclease RuvC [Clostridium
           difficile QCD-97b34]
 gi|255651318|ref|ZP_05398220.1| crossover junction endodeoxyribonuclease RuvC [Clostridium
           difficile QCD-37x79]
 gi|255656791|ref|ZP_05402200.1| crossover junction endodeoxyribonuclease RuvC [Clostridium
           difficile QCD-23m63]
 gi|260684382|ref|YP_003215667.1| Holliday junction resolvase [Clostridium difficile CD196]
 gi|260688041|ref|YP_003219175.1| Holliday junction resolvase [Clostridium difficile R20291]
 gi|296452379|ref|ZP_06894080.1| crossover junction endoribonuclease subunit C [Clostridium
           difficile NAP08]
 gi|296877728|ref|ZP_06901755.1| crossover junction endoribonuclease subunit C [Clostridium
           difficile NAP07]
 gi|306521150|ref|ZP_07407497.1| Holliday junction resolvase [Clostridium difficile QCD-32g58]
 gi|260210545|emb|CBA65077.1| crossover junction endodeoxyribonuclease RuvC [Clostridium
           difficile CD196]
 gi|260214058|emb|CBE06224.1| crossover junction endodeoxyribonuclease RuvC [Clostridium
           difficile R20291]
 gi|296258709|gb|EFH05603.1| crossover junction endoribonuclease subunit C [Clostridium
           difficile NAP08]
 gi|296431261|gb|EFH17081.1| crossover junction endoribonuclease subunit C [Clostridium
           difficile NAP07]
          Length = 169

 Score =  108 bits (269), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 52/154 (33%), Positives = 89/154 (57%), Gaps = 2/154 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG+   G+GI++        +  G + +    +++ RL  +Y+G+  ++KN+  +
Sbjct: 3   ILGIDPGIAIVGYGIIEYKNSKFKVIDYGAVTTPAHMNISRRLELVYKGIDTIVKNYNID 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E  +E++F NK+    + + QAR + +L+ A    PV EY P  +K+ V+G G  DK Q+
Sbjct: 63  EVGMEELFFNKNVKTAITVAQARGVTMLACAHNGKPVYEYTPLQVKQGVVGYGRADKAQV 122

Query: 127 HMMLKMLMP-ESFFKGKDAADALAIAVCHAYHAN 159
             M+   +  +   K  D ADALA+A+CHA H+N
Sbjct: 123 QQMVTSFLSLKKVPKPDDVADALAVAICHA-HSN 155


>gi|50121418|ref|YP_050585.1| Holliday junction resolvase [Pectobacterium atrosepticum SCRI1043]
 gi|81644877|sp|Q6D4A0|RUVC_ERWCT RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|49611944|emb|CAG75393.1| crossover junction endodeoxyribonuclease [Pectobacterium
           atrosepticum SCRI1043]
          Length = 170

 Score =  108 bits (269), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 55/131 (41%), Positives = 85/131 (64%), Gaps = 1/131 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+GI+   G +L ++ SG I + V   +  RL  +Y G++++I  ++P+
Sbjct: 4   IVGIDPGSRVTGYGIIRQQGRHLTYLGSGCIRTVV-DDMPTRLKLIYAGVSEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+  + LKLGQAR +AI++     +PV EYA   +KK V+G G  DKKQ+
Sbjct: 63  CMAIEQVFMAKNPDSALKLGQARGVAIVAGVNQDLPVFEYAARLVKKTVVGTGAADKKQV 122

Query: 127 HMMLKMLMPES 137
             M++ L+  S
Sbjct: 123 QHMVRSLLKLS 133


>gi|300904747|ref|ZP_07122577.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
           84-1]
 gi|301304452|ref|ZP_07210564.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
           124-1]
 gi|300403331|gb|EFJ86869.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
           84-1]
 gi|300840303|gb|EFK68063.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
           124-1]
 gi|315257305|gb|EFU37273.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
           85-1]
          Length = 173

 Score =  108 bits (269), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 53/128 (41%), Positives = 84/128 (65%), Gaps = 1/128 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I + V   L  RL  +Y G+T++I  ++P+
Sbjct: 4   ILGIDPGSRVTGYGVICQVGRQLSYLGSGCIRTKV-DDLPSRLKLIYAGVTEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR +AI++     +PV EYA   +K+ V+G+G  +K Q+
Sbjct: 63  YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 122

Query: 127 HMMLKMLM 134
             M++ L+
Sbjct: 123 QHMVRTLL 130


>gi|307609999|emb|CBW99531.1| crossover junction endodeoxyribonuclease ruvC [Legionella
           pneumophila 130b]
          Length = 174

 Score =  108 bits (269), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 58/153 (37%), Positives = 101/153 (66%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++  +G  + ++ SG I +     L+ +L Q+Y+G+ +++ ++ P 
Sbjct: 4   ILGIDPGSRVTGYGLIKESGRKIAYIDSGCIRTSNDVELSHKLLQIYDGICELMDHYSPT 63

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+EQ+F++ +  + LKLG AR +A+++ A  R+ + EY+   IK++V+G G  +K Q+
Sbjct: 64  EVAIEQIFMHNNPNSALKLGHARGVAMVAAASHRVKICEYSAREIKQSVVGYGAAEKDQV 123

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHAN 159
             M+  L+  +    KDAADALAIA+CH++  N
Sbjct: 124 SHMVVELLQLNRAPQKDAADALAIAICHSHMRN 156


>gi|157156383|ref|YP_001463166.1| Holliday junction resolvase [Escherichia coli E24377A]
 gi|167012678|sp|A7ZMY7|RUVC_ECO24 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|157078413|gb|ABV18121.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           E24377A]
          Length = 173

 Score =  108 bits (269), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 52/128 (40%), Positives = 84/128 (65%), Gaps = 1/128 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I + V   L  RL  +Y G+T++I  ++P+
Sbjct: 4   ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKV-DDLPSRLKLIYAGVTEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR +AI++     +PV EYA   +K+ V+G+G  +K Q+
Sbjct: 63  FFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 122

Query: 127 HMMLKMLM 134
             M++ ++
Sbjct: 123 QHMVRTML 130


>gi|313895597|ref|ZP_07829153.1| crossover junction endodeoxyribonuclease RuvC [Selenomonas sp. oral
           taxon 137 str. F0430]
 gi|312975723|gb|EFR41182.1| crossover junction endodeoxyribonuclease RuvC [Selenomonas sp. oral
           taxon 137 str. F0430]
          Length = 164

 Score =  108 bits (269), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 59/156 (37%), Positives = 92/156 (58%), Gaps = 3/156 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           ++GIDPG    G+G V+  G  L   + G I +  +     RL ++Y  L ++I+  RP 
Sbjct: 3   VLGIDPGTAICGYGFVEQIGSRLVPHAYGAITTPSKMQPERRLLKIYTELENLIQEHRPS 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ- 125
              +EQ+F N++    + +GQAR IA+L+ A   IP+ E+ P  +K+AV G G   K+Q 
Sbjct: 63  AIGIEQLFFNRNVTTAIPVGQARGIALLAAAKNDIPIVEHTPLQVKQAVTGYGKATKEQV 122

Query: 126 IHMMLKML-MPESFFKGKDAADALAIAVCHAYHANS 160
           I+M+ K+L +PE  +   D ADALA+A+C AY  +S
Sbjct: 123 IYMVTKLLHLPEPPYP-DDTADALAVAICTAYCVDS 157


>gi|189502161|ref|YP_001957878.1| Holliday junction resolvase [Candidatus Amoebophilus asiaticus 5a2]
 gi|189497602|gb|ACE06149.1| hypothetical protein Aasi_0769 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 182

 Score =  108 bits (269), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 55/153 (35%), Positives = 94/153 (61%), Gaps = 2/153 (1%)

Query: 7   IIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           IIGIDPG +  G+G++ V        +  G +      S A +L ++++   +++  + P
Sbjct: 7   IIGIDPGTQVMGYGVIKVLQHQQFSILQYGILDLQQCPSHALKLQKIFKYTLEILDEFTP 66

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
           +EAA+E  F  K+  + LKLG+A+ +A+ +  +  +P++EYAP  IK+A+ G G+  K+Q
Sbjct: 67  DEAALEAPFYGKNVQSMLKLGRAQGVAMAAALMREVPITEYAPRKIKQAITGNGNASKEQ 126

Query: 126 I-HMMLKMLMPESFFKGKDAADALAIAVCHAYH 157
           + +M++ ML  +S  +  DA DALA+AVCHAY 
Sbjct: 127 VAYMLMSMLPSKSMPEKLDATDALAVAVCHAYQ 159


>gi|88861320|ref|ZP_01135951.1| Holliday junction nuclease [Pseudoalteromonas tunicata D2]
 gi|88816699|gb|EAR26523.1| Holliday junction nuclease [Pseudoalteromonas tunicata D2]
          Length = 173

 Score =  108 bits (269), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 67/165 (40%), Positives = 102/165 (61%), Gaps = 8/165 (4%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVR---QSLAFRLCQLYEGLTDVIKNW 63
           I+GIDPG R TG+G++ + G    ++ SG    C+R   + LA RL  ++ G++ +I+ +
Sbjct: 4   ILGIDPGSRLTGYGVISMQGSKYSYLGSG----CIRLGDKPLAERLKMIFLGVSQIIEQY 59

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +P   A+EQVF+  +  + LKLGQAR  AI++  +A + V EY+   +K+AV+G G  DK
Sbjct: 60  QPTAFAIEQVFMAHNPDSALKLGQARGAAIVAATMADLLVCEYSARQVKQAVVGNGGADK 119

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
           KQ+  M+K L+        DAADALAIA+CH  H+     K+A Q
Sbjct: 120 KQVQHMVKTLLTLPSMPQADAADALAIAMCHG-HSQQSLIKLAGQ 163


>gi|97274471|sp|Q6FAQ2|RUVC_ACIAD RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
          Length = 181

 Score =  107 bits (268), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 68/160 (42%), Positives = 101/160 (63%), Gaps = 2/160 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           IIGIDPG R TG+GI++  G+ L F+ +GTI     Q +  RL +++ G+  ++K   P 
Sbjct: 4   IIGIDPGSRLTGYGIIEKNGNELRFIDAGTI-RTESQDMPERLKRIFAGVERIVKFHGPT 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           +AAVEQVF+ ++  + LKLGQAR  AI +     + V+EY    IK++V+G G  DK+Q+
Sbjct: 63  QAAVEQVFMAQNPDSALKLGQARGAAIAALVNLDLEVAEYTARQIKQSVVGYGAADKEQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
            MM+  ++  +     DAADALA A+CHA HA+    K+A
Sbjct: 123 QMMVMRILNLTIKPQSDAADALAAAICHA-HASGSMSKMA 161


>gi|253989950|ref|YP_003041306.1| Holliday junction resolvase [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|211639069|emb|CAR67682.1| crossover junction endodeoxyribonuclease ruvc (ec 3.1.22.4)
           (hollida junction nuclease ruvc) (holliday junction
           resolvase ruvc) [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253781400|emb|CAQ84563.1| crossover junction endodeoxyribonuclease RuvC [Photorhabdus
           asymbiotica]
          Length = 173

 Score =  107 bits (268), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 52/128 (40%), Positives = 84/128 (65%), Gaps = 1/128 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           ++GIDPG R TG+G++   G +L ++ SG I + V   L  RL ++Y G+T++I  ++P+
Sbjct: 4   VLGIDPGSRVTGYGVIRQQGRHLIYLGSGCIRTKV-DDLPSRLQRIYAGITEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+  + LKLGQAR +AIL+     +PV EYA   +K+ V+G G  +K QI
Sbjct: 63  AFAIEQVFMAKNPDSALKLGQARGVAILAAVNQSVPVFEYAARQVKQTVVGTGAAEKSQI 122

Query: 127 HMMLKMLM 134
             M++ ++
Sbjct: 123 QHMVRSML 130


>gi|92113969|ref|YP_573897.1| crossover junction endodeoxyribonuclease RuvC [Chromohalobacter
           salexigens DSM 3043]
 gi|123084055|sp|Q1QWG0|RUVC_CHRSD RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|91797059|gb|ABE59198.1| crossover junction endodeoxyribonuclease RuvC [Chromohalobacter
           salexigens DSM 3043]
          Length = 186

 Score =  107 bits (268), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 71/153 (46%), Positives = 97/153 (63%), Gaps = 7/153 (4%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVR---QSLAFRLCQLYEGLTDVIKNW 63
           ++GIDPG R TG+G+VDVA     +V+SG    C+R     LA +L Q+Y G+ ++I   
Sbjct: 10  LLGIDPGSRITGYGVVDVATPTPRYVASG----CIRIKSDQLAQKLAQVYAGIGELIGLH 65

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RP E A+EQVF++K+A + LKLGQAR  AI+  A   + V EYAP  IK+AV G G   K
Sbjct: 66  RPHEIAIEQVFMSKNADSALKLGQARGTAIVCAANHGLEVFEYAPTQIKQAVTGTGAATK 125

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
           +Q+  M+  ++        DAADALAIA+ HAY
Sbjct: 126 EQVQHMVTAILGLDGVPQADAADALAIALTHAY 158


>gi|50085173|ref|YP_046683.1| Holliday junction resolvase [Acinetobacter sp. ADP1]
 gi|49531149|emb|CAG68861.1| holliday junction nuclease [Acinetobacter sp. ADP1]
          Length = 191

 Score =  107 bits (268), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 68/160 (42%), Positives = 101/160 (63%), Gaps = 2/160 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           IIGIDPG R TG+GI++  G+ L F+ +GTI     Q +  RL +++ G+  ++K   P 
Sbjct: 14  IIGIDPGSRLTGYGIIEKNGNELRFIDAGTI-RTESQDMPERLKRIFAGVERIVKFHGPT 72

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           +AAVEQVF+ ++  + LKLGQAR  AI +     + V+EY    IK++V+G G  DK+Q+
Sbjct: 73  QAAVEQVFMAQNPDSALKLGQARGAAIAALVNLDLEVAEYTARQIKQSVVGYGAADKEQV 132

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
            MM+  ++  +     DAADALA A+CHA HA+    K+A
Sbjct: 133 QMMVMRILNLTIKPQSDAADALAAAICHA-HASGSMSKMA 171


>gi|225849642|ref|YP_002729876.1| crossover junction endodeoxyribonuclease RuvC [Persephonella marina
           EX-H1]
 gi|225645877|gb|ACO04063.1| crossover junction endodeoxyribonuclease RuvC [Persephonella marina
           EX-H1]
          Length = 155

 Score =  107 bits (268), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 56/156 (35%), Positives = 84/156 (53%), Gaps = 9/156 (5%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           ++GIDPG   TG+ I  + G     VSSGTI +  ++   FR+  +YE L   I  + P+
Sbjct: 5   VLGIDPGNYSTGFSIFKITGKKHRLVSSGTIKTSRKKPENFRI--IYESLERTINEFSPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E  F   +    +KLG+ R + +L  A  RIPV EY P  +K A+ G G   K+ +
Sbjct: 63  EIALESSFYGNNPQTIIKLGEIRGVILLLSAFYRIPVYEYTPQQVKNAITGYGWAKKEDV 122

Query: 127 HMMLKMLM---PESFFKGKDAADALAIAVCHAYHAN 159
           ++M++ L    PE+     D ADA+A+  CH    N
Sbjct: 123 YLMVQKLFNIKPET----NDEADAIAVGFCHCLSKN 154


>gi|167855799|ref|ZP_02478552.1| crossover junction endodeoxyribonuclease RuvC [Haemophilus parasuis
           29755]
 gi|219871141|ref|YP_002475516.1| Holliday junction resolvase [Haemophilus parasuis SH0165]
 gi|254767475|sp|B8F5G6|RUVC_HAEPS RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|167853078|gb|EDS24339.1| crossover junction endodeoxyribonuclease RuvC [Haemophilus parasuis
           29755]
 gi|219691345|gb|ACL32568.1| holliday junction resolvase [Haemophilus parasuis SH0165]
          Length = 192

 Score =  107 bits (268), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 65/150 (43%), Positives = 99/150 (66%), Gaps = 1/150 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G +L ++ SG I + V + L  RL ++Y G+T++I  ++P+
Sbjct: 4   ILGIDPGSRVTGYGVIRQTGRHLEYLGSGAIRTSV-EDLPTRLKRIYAGVTEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR  AI++     +PV EYA   +K+ V+G+G  DK Q+
Sbjct: 63  MFAIEQVFMAKNADSALKLGQARGTAIVAAVNHDLPVFEYAARLVKQTVVGIGSADKVQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAY 156
             M+  ++  S     DAADALAIA+ HA+
Sbjct: 123 QDMVTRILQLSAKPQADAADALAIAITHAH 152


>gi|313673193|ref|YP_004051304.1| crossover junction endodeoxyribonuclease ruvc [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312939949|gb|ADR19141.1| crossover junction endodeoxyribonuclease RuvC [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 164

 Score =  107 bits (268), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 58/148 (39%), Positives = 90/148 (60%), Gaps = 1/148 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPGL +TG G++ V   NL ++    I +  ++SL  RL ++  GL+D+IK ++P 
Sbjct: 3   ILGIDPGLNKTGVGVLKVDNKNLGYLHHFVIKTDPKESLVLRLKEITTGLSDIIKEFQPS 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
            AAVE +F + +  + + LGQ R   I +   + + V EY    IKK+V+G G  DK+Q+
Sbjct: 63  YAAVEDIFYSVNIKSAILLGQTRGCIISTLVASGVEVMEYTALQIKKSVVGYGKADKEQV 122

Query: 127 HMMLKMLMP-ESFFKGKDAADALAIAVC 153
             M++ML+  E      DA+DALA A+C
Sbjct: 123 KKMVEMLLKIELRNTLNDASDALACAIC 150


>gi|229814934|ref|ZP_04445272.1| hypothetical protein COLINT_01977 [Collinsella intestinalis DSM
           13280]
 gi|229809421|gb|EEP45185.1| hypothetical protein COLINT_01977 [Collinsella intestinalis DSM
           13280]
          Length = 174

 Score =  107 bits (268), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 60/151 (39%), Positives = 89/151 (58%), Gaps = 1/151 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPGL  TGWGIV+     +   + G I +     LA RL ++ + LT V+  +RP+
Sbjct: 3   ILGIDPGLANTGWGIVEERRGEVRCRAYGCIETSSGSDLAARLRRIADELTAVVDRYRPQ 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           EAAVE ++   +  + +    AR  A+++ +L  + V EY P  IK+AV+G G  DK Q+
Sbjct: 63  EAAVEGIYFGANVRSAIPTAHARGAALVACSLCGVEVGEYTPMQIKQAVVGTGAADKTQV 122

Query: 127 HMMLKMLMP-ESFFKGKDAADALAIAVCHAY 156
             M++ L+  +   K   AADALA AVCHA+
Sbjct: 123 TYMVRTLLHLDHDPKPDHAADALACAVCHAH 153


>gi|313114600|ref|ZP_07800108.1| crossover junction endodeoxyribonuclease RuvC [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310623064|gb|EFQ06511.1| crossover junction endodeoxyribonuclease RuvC [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 170

 Score =  107 bits (268), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 56/153 (36%), Positives = 89/153 (58%), Gaps = 3/153 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPG    GWG+VD AG+    V  G + +        RL ++Y G+ +VI+  R
Sbjct: 1   MRVLGIDPGYAIVGWGVVDYAGNRFAPVDFGAVCTDAGVPFERRLDEVYAGIKEVIERTR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           PE  A+E++F   +    + + +AR + +L+ A A +P+ EY P  +K+AV G G   KK
Sbjct: 61  PEVLAIEKLFYQHNQTTVIGVAEARGVILLAAAQAGLPIYEYTPMQVKQAVTGYGKAVKK 120

Query: 125 QIHMMLKMLMP-ESFFKGKDAADALAIAV--CH 154
           Q+  M ++L+   +  K  D ADALA+A+  CH
Sbjct: 121 QVQEMTRVLLHLPAVPKPDDTADALAMAITFCH 153


>gi|317131998|ref|YP_004091312.1| crossover junction endodeoxyribonuclease RuvC [Ethanoligenens
           harbinense YUAN-3]
 gi|315469977|gb|ADU26581.1| crossover junction endodeoxyribonuclease RuvC [Ethanoligenens
           harbinense YUAN-3]
          Length = 167

 Score =  107 bits (268), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 54/155 (34%), Positives = 88/155 (56%), Gaps = 1/155 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           ++GIDPG    G+G V  A +    +  G I +        RL Q+Y+G+ ++ +  RP+
Sbjct: 3   VLGIDPGYAIIGYGAVRYAQNRYTVLEYGAIRTEANTPFPARLAQIYDGMRELFRVCRPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             AVE++F N +    + + +AR + +L+   A + V+EY P+ +K+AV+G G  +K Q+
Sbjct: 63  AVAVEELFFNTNTTTGIAVAEARGVILLAAEQAGVRVAEYTPSQVKQAVVGYGRAEKAQV 122

Query: 127 HMMLKMLMP-ESFFKGKDAADALAIAVCHAYHANS 160
             + +ML+      K  D ADALAIA+CHA  A S
Sbjct: 123 MELTRMLLGLREVPKPDDTADALAIAICHANSAGS 157


>gi|262370333|ref|ZP_06063659.1| crossover junction endodeoxyribonuclease RuvC [Acinetobacter
           johnsonii SH046]
 gi|262314675|gb|EEY95716.1| crossover junction endodeoxyribonuclease RuvC [Acinetobacter
           johnsonii SH046]
          Length = 181

 Score =  107 bits (268), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 70/160 (43%), Positives = 100/160 (62%), Gaps = 2/160 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           IIGIDPG R TG+GI+   G  L FV +GTI +     +  RL +++ G+  ++K   P 
Sbjct: 4   IIGIDPGSRLTGYGIIQKEGQKLIFVDAGTIRTEA-ADMPERLKRIFAGIDRIVKFHGPT 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           EAAVEQVF+ ++  + LKLGQAR  AI +     + V+EY    IK++V+G G  DK+Q+
Sbjct: 63  EAAVEQVFMAQNPDSALKLGQARGAAIAALVNLDLQVAEYTARQIKQSVVGYGAADKEQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
            +M+  L+  S    +DAADALA A+CHA HA+    K+A
Sbjct: 123 QIMVMRLLNLSIKPQQDAADALAAAICHA-HASGSMTKLA 161


>gi|37526026|ref|NP_929370.1| Holliday junction resolvase [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|44888381|sp|Q7N549|RUVC_PHOLL RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|36785456|emb|CAE14403.1| crossover junction endodeoxyribonuclease (Holliday junction
           nuclease RuvC) (Holliday junction resolvase RuvC)
           [Photorhabdus luminescens subsp. laumondii TTO1]
          Length = 173

 Score =  107 bits (267), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 54/131 (41%), Positives = 85/131 (64%), Gaps = 1/131 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G +L ++ SG I + V   L  RL ++Y G+ ++I  ++P+
Sbjct: 4   ILGIDPGSRVTGYGVIRQQGRHLSYLGSGCIRTKV-DDLPNRLQRIYAGILEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR +AIL+     IPV EYA   +K+ V+G G  +K Q+
Sbjct: 63  AFAIEQVFMAKNADSALKLGQARGVAILAAVNQSIPVFEYAARQVKQTVVGTGAAEKSQV 122

Query: 127 HMMLKMLMPES 137
             M++ ++  S
Sbjct: 123 QHMVRSVLKLS 133


>gi|74318232|ref|YP_315972.1| Holliday junction resolvase [Thiobacillus denitrificans ATCC 25259]
 gi|90146485|sp|Q3SGT0|RUVC_THIDA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|74057727|gb|AAZ98167.1| Crossover junction endodeoxyribonuclease RuvC [Thiobacillus
           denitrificans ATCC 25259]
          Length = 171

 Score =  107 bits (267), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 69/157 (43%), Positives = 96/157 (61%), Gaps = 1/157 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGLR TG+G+++  G  L +V+SG +V     SL  RL  L+ G+ +VI  +R
Sbjct: 1   MRILGIDPGLRLTGFGLIEQTGQKLAYVASG-VVKSGEGSLPARLGILFGGINEVIATYR 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  AVE VFVN +  +TL LGQAR  AI +     + V+EY    IK+AV+G G   K 
Sbjct: 60  PDTCAVEIVFVNVNPQSTLLLGQARGAAICAAVSNDLTVAEYTALQIKQAVVGHGKAAKT 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSG 161
           Q+  M+K L+        DAADALA A+ HA+ +  G
Sbjct: 120 QVQEMVKRLLALPIAPTADAADALACAITHAHGSRLG 156


>gi|187611519|sp|A5CES8|RUVC_ORITB RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
          Length = 159

 Score =  107 bits (267), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 58/147 (39%), Positives = 89/147 (60%), Gaps = 4/147 (2%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDP L  TGWG++ ++   + ++ SG I +  + SL  +L  +   +  +I  + P 
Sbjct: 3   ILGIDPSLVSTGWGVISISDSMVNYIDSGVIKTVSKDSLVLKLGNISLMIEKLITRFNPF 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALAR--IPVSEYAPNTIKKAVIGVGHGDKK 124
             A+E+VF+NK+  +++ L QAR  AI+S  + R  I  SEYAPN IKKA++G G  +K 
Sbjct: 63  HVAMEEVFINKNYSSSVTLIQARG-AIMS-VIGRYNIDFSEYAPNKIKKAIVGAGKAEKH 120

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIA 151
           Q+  M+K+LM       KD +DALA A
Sbjct: 121 QVQQMVKLLMHIKKAISKDESDALATA 147


>gi|183598999|ref|ZP_02960492.1| hypothetical protein PROSTU_02443 [Providencia stuartii ATCC 25827]
 gi|188021214|gb|EDU59254.1| hypothetical protein PROSTU_02443 [Providencia stuartii ATCC 25827]
          Length = 173

 Score =  107 bits (267), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 54/131 (41%), Positives = 85/131 (64%), Gaps = 1/131 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I + V   L  RL ++Y G++++I  ++P+
Sbjct: 4   ILGIDPGSRVTGYGVIRQQGRQLFYLGSGCIRTQV-DDLPSRLQRIYAGVSEIITQYQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR +AI++     IPV EYA   +K+ V+G G  +K Q+
Sbjct: 63  VLAIEQVFMAKNADSALKLGQARGVAIVAGVNQNIPVFEYAARQVKQTVVGTGAAEKSQV 122

Query: 127 HMMLKMLMPES 137
             M+K ++  S
Sbjct: 123 QHMVKSILKLS 133


>gi|126700423|ref|YP_001089320.1| Holliday junction resolvase [Clostridium difficile 630]
 gi|122973685|sp|Q183P3|RUVC_CLOD6 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|115251860|emb|CAJ69695.1| Crossover junction endodeoxyribonuclease RuvC (Holliday junction
           nuclease RuvC) (Holliday junction resolvase RuvC)
           [Clostridium difficile]
          Length = 169

 Score =  107 bits (267), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 52/154 (33%), Positives = 89/154 (57%), Gaps = 2/154 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG+   G+GI++        +  G + +    +++ RL  +Y+G+  ++KN+  +
Sbjct: 3   ILGIDPGIAIVGYGIIEYKNSKFKAIDYGAVTTPAHMNISRRLELVYKGIDTIVKNYNID 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E  +E++F NK+    + + QAR + +L+ A    PV EY P  +K+ V+G G  DK Q+
Sbjct: 63  EVGMEELFFNKNVKTAITVAQARGVTMLACAHNGKPVYEYTPLQVKQGVVGYGRADKAQV 122

Query: 127 HMMLKMLMP-ESFFKGKDAADALAIAVCHAYHAN 159
             M+   +  +   K  D ADALA+A+CHA H+N
Sbjct: 123 QQMVTSFLSLKKVPKPDDVADALAVAICHA-HSN 155


>gi|77360815|ref|YP_340390.1| Holliday junction nuclease [Pseudoalteromonas haloplanktis TAC125]
 gi|110282924|sp|Q3IIJ0|RUVC_PSEHT RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|76875726|emb|CAI86947.1| Holliday junction nuclease [Pseudoalteromonas haloplanktis TAC125]
          Length = 174

 Score =  107 bits (267), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 68/160 (42%), Positives = 97/160 (60%), Gaps = 2/160 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G+V   G    ++ SG I          RL  +Y+G+T +I+ + PE
Sbjct: 4   ILGIDPGSRLTGYGVVAHQGSKFTYLGSGCI-KLADHEFHIRLKMIYQGITQLIEQFSPE 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+E+VF+  +  + LKLGQAR  AI+  A+A +PV EY+   IK+AV+G G  DK Q+
Sbjct: 63  TFAIEKVFMAHNPDSALKLGQARGAAIVGAAMADLPVFEYSARQIKQAVVGNGGADKTQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
             M+K ++        DAADALAIA+CHA H+     K+A
Sbjct: 123 QHMVKNILKLPGTPQADAADALAIAICHA-HSEQNLIKLA 161


>gi|326201640|ref|ZP_08191511.1| crossover junction endodeoxyribonuclease RuvC [Clostridium
           papyrosolvens DSM 2782]
 gi|325988240|gb|EGD49065.1| crossover junction endodeoxyribonuclease RuvC [Clostridium
           papyrosolvens DSM 2782]
          Length = 166

 Score =  107 bits (267), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 52/150 (34%), Positives = 85/150 (56%), Gaps = 1/150 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG   TG+G+V   G+    +    I +      + RL  LY  L  +I  ++P+
Sbjct: 3   IMGIDPGFAITGYGVVKYEGNKFSVLDYSAITTGASMKFSDRLLVLYNELEKLIDKYKPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             ++E++F NK+    L +G  R +A+L+ A + I + EY P  +K++V+G G  +K QI
Sbjct: 63  AISIEELFFNKNIKTALTVGHGRGVAVLAAAKSGIDIFEYTPLQVKQSVVGYGRAEKAQI 122

Query: 127 HMMLKMLMP-ESFFKGKDAADALAIAVCHA 155
             M+K ++   +  K  D ADALA+A+CH 
Sbjct: 123 QQMVKAILNLPAIPKPDDVADALAVAICHG 152


>gi|268317947|ref|YP_003291666.1| crossover junction endodeoxyribonuclease RuvC [Rhodothermus marinus
           DSM 4252]
 gi|262335481|gb|ACY49278.1| crossover junction endodeoxyribonuclease RuvC [Rhodothermus marinus
           DSM 4252]
          Length = 191

 Score =  107 bits (267), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 57/154 (37%), Positives = 93/154 (60%), Gaps = 3/154 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++ V G+    ++   I    + +   RL +L+E L  +++ +RP+
Sbjct: 13  ILGIDPGSRHTGYGVLAVEGERARVLAVDVIHLDEQAAHPLRLLRLFEQLGAIVERYRPD 72

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E     ++  + LKLG+A+A A+L+    +IP  EY P  +KKA+ G G+  K+Q+
Sbjct: 73  ECALEMPVYGRNPQSMLKLGRAQAAAMLAVLTRQIPTVEYTPKEVKKALTGRGNATKEQV 132

Query: 127 HMMLKMLMP---ESFFKGKDAADALAIAVCHAYH 157
             M++ L+    E+     DA+DALA+AVCH  H
Sbjct: 133 RFMVQALLELPAEAARLALDASDALAVAVCHWQH 166


>gi|210635286|ref|ZP_03298482.1| hypothetical protein COLSTE_02413 [Collinsella stercoris DSM 13279]
 gi|210158447|gb|EEA89418.1| hypothetical protein COLSTE_02413 [Collinsella stercoris DSM 13279]
          Length = 174

 Score =  107 bits (267), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 59/151 (39%), Positives = 87/151 (57%), Gaps = 1/151 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPGL  TGWGIV+     +   + G I +     LA RL ++   LT V+  + P+
Sbjct: 3   ILGIDPGLAHTGWGIVEERHGEVRCRAYGCIETSAGSDLAARLRRIANELTTVVDRYHPQ 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           EAAVE ++   +  + +    AR  A+++ +L  + V EY P  IK+AV+G G  DK Q+
Sbjct: 63  EAAVEGIYFGANVRSAIPTAHARGAALVACSLCSVEVGEYTPMQIKQAVVGTGSADKAQV 122

Query: 127 HMMLKMLMP-ESFFKGKDAADALAIAVCHAY 156
             M++ L+  +   K   AADALA AVCHA+
Sbjct: 123 TYMVRTLLHLDHDPKPDHAADALACAVCHAH 153


>gi|57234747|ref|YP_181187.1| crossover junction endodeoxyribonuclease RuvC [Dehalococcoides
           ethenogenes 195]
 gi|110287671|sp|Q3Z9B2|RUVC_DEHE1 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|57225195|gb|AAW40252.1| crossover junction endodeoxyribonuclease RuvC [Dehalococcoides
           ethenogenes 195]
          Length = 165

 Score =  107 bits (267), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 61/165 (36%), Positives = 101/165 (61%), Gaps = 3/165 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPG    G+G+++ A D L  +   ++       +  RL  +Y+GL +VI+ ++
Sbjct: 1   MRILGIDPGTMVVGYGVIEAADDELSLIGFSSLTPPASAPIPQRLAYIYKGLVEVIELYQ 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+E AVE  F +K+  + L +G+A+A+A+L+ A   + V+EY+P  IK  V G G   K+
Sbjct: 61  PDEVAVESPFADKNIKSALAIGKAQAVALLAAANHSLSVTEYSPACIKSRVSGSGTASKE 120

Query: 125 QIHMMLKMLMP-ESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
           QI  M+++L+      +  DAADALA+A+CH  H++  +  I SQ
Sbjct: 121 QIQEMVRLLLNLAEIPQPNDAADALAVAICH--HSHRAFANITSQ 163


>gi|256823081|ref|YP_003147044.1| crossover junction endodeoxyribonuclease RuvC [Kangiella koreensis
           DSM 16069]
 gi|256796620|gb|ACV27276.1| crossover junction endodeoxyribonuclease RuvC [Kangiella koreensis
           DSM 16069]
          Length = 176

 Score =  107 bits (267), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 64/156 (41%), Positives = 104/156 (66%), Gaps = 11/156 (7%)

Query: 7   IIGIDPGLRRTGWGIVDVAG----DNLCFVSSGTIVSCVR---QSLAFRLCQLYEGLTDV 59
           I+GIDPG R TG+GI++V G    +   +++SG    C+R   ++L  +L Q+++ + ++
Sbjct: 4   ILGIDPGSRLTGFGIIEVGGQIPANRPRYITSG----CIRIKDETLDLKLKQIFDSVCEL 59

Query: 60  IKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVG 119
           I+ ++P+E A+E VF++K+A + LKLGQAR  AI++ +   +PVSEY    +K++V+G G
Sbjct: 60  IQEFKPDEFAIESVFLSKNADSALKLGQARGAAIVAASHYALPVSEYPATKVKQSVVGTG 119

Query: 120 HGDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHA 155
             DK Q+  M+K L+        DAADALA+A+CHA
Sbjct: 120 GADKSQVQHMVKTLLKLPTSPQADAADALAVALCHA 155


>gi|146296576|ref|YP_001180347.1| crossover junction endodeoxyribonuclease RuvC [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|166231590|sp|A4XJS1|RUVC_CALS8 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|145410152|gb|ABP67156.1| crossover junction endodeoxyribonuclease RuvC [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 166

 Score =  107 bits (267), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 55/162 (33%), Positives = 93/162 (57%), Gaps = 2/162 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++GIDPG+  TG+GI++   G     +  G I +      + RL  LY  L  +I  +
Sbjct: 1   MRVLGIDPGIALTGYGIIESKNGSEFKVIDYGRIETSSSLKKSMRLLHLYTELCSIISLY 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +P+  A+E++F +K++   + +G+AR + IL+     + + EY P  +K+++ G G  DK
Sbjct: 61  QPDVVAIEELFFSKNSKTAITIGEARGVIILTCIQNNLSIYEYTPLQVKQSITGYGRADK 120

Query: 124 KQIHMMLKMLMPESFF-KGKDAADALAIAVCHAYHANSGYYK 164
            QI  M+K L+  S   K  D ADALA+A+CH   ++S  Y+
Sbjct: 121 TQIQKMVKSLLGLSEIPKPDDVADALAVAMCHILSSSSVLYQ 162


>gi|295095543|emb|CBK84633.1| crossover junction endodeoxyribonuclease RuvC [Enterobacter cloacae
           subsp. cloacae NCTC 9394]
          Length = 173

 Score =  107 bits (267), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 52/128 (40%), Positives = 84/128 (65%), Gaps = 1/128 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I + V   L  RL  +Y G++++I  ++P+
Sbjct: 4   ILGIDPGSRVTGYGVIRQVGRQLTYLGSGCIRTKV-DDLPSRLKLIYAGVSEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR +AI++     +PV EYA   +K+ V+G+G  +K Q+
Sbjct: 63  YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQDLPVFEYAARQVKQTVVGIGSAEKSQV 122

Query: 127 HMMLKMLM 134
             M++ L+
Sbjct: 123 QHMVRTLL 130


>gi|224827242|ref|ZP_03700336.1| crossover junction endodeoxyribonuclease RuvC [Lutiella nitroferrum
           2002]
 gi|224600531|gb|EEG06720.1| crossover junction endodeoxyribonuclease RuvC [Lutiella nitroferrum
           2002]
          Length = 176

 Score =  107 bits (266), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 57/131 (43%), Positives = 83/131 (63%)

Query: 4   SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           S RI+GIDPG R TG+G++DV G    +V+SG I +     LA R+  + +GL  V+  +
Sbjct: 2   SRRILGIDPGSRITGFGVIDVIGQQRHYVASGCIRTPQGAPLAERIKVIVDGLFGVVDTY 61

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RP EAAVEQVFVN +  ATL LGQAR   + +  L ++ V+EY    +K++V+G G   K
Sbjct: 62  RPGEAAVEQVFVNVNPAATLMLGQARGAVLAALVLKQLTVAEYTALQVKQSVVGHGKAPK 121

Query: 124 KQIHMMLKMLM 134
           +Q+  M+  L+
Sbjct: 122 EQVQAMIVRLL 132


>gi|270157093|ref|ZP_06185750.1| crossover junction endodeoxyribonuclease RuvC [Legionella
           longbeachae D-4968]
 gi|289164496|ref|YP_003454634.1| Crossover junction endodeoxyribonuclease ruvC [Legionella
           longbeachae NSW150]
 gi|269989118|gb|EEZ95372.1| crossover junction endodeoxyribonuclease RuvC [Legionella
           longbeachae D-4968]
 gi|288857669|emb|CBJ11512.1| Crossover junction endodeoxyribonuclease ruvC [Legionella
           longbeachae NSW150]
          Length = 172

 Score =  107 bits (266), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 60/150 (40%), Positives = 99/150 (66%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++  +   + ++ SG I +     L+ +L Q+Y+G+  ++  + PE
Sbjct: 4   ILGIDPGSRITGYGLIKESDRKIEYIDSGCIRTTPDGELSQKLLQIYDGICQLMDQYSPE 63

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+EQVF++++  + LKLG AR +A+++ A  R+ VSEY+   IK+ V+G G  +K Q+
Sbjct: 64  EVAIEQVFMHENPNSALKLGHARGVAMVAAASHRVKVSEYSAREIKQTVVGYGAAEKNQV 123

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAY 156
             M+  L+  +    KDAADALAIA+CH++
Sbjct: 124 SHMVVSLLALNKAPQKDAADALAIAICHSH 153


>gi|260912902|ref|ZP_05919387.1| crossover junction endodeoxyribonuclease RuvC [Pasteurella dagmatis
           ATCC 43325]
 gi|260632892|gb|EEX51058.1| crossover junction endodeoxyribonuclease RuvC [Pasteurella dagmatis
           ATCC 43325]
          Length = 190

 Score =  107 bits (266), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 64/157 (40%), Positives = 100/157 (63%), Gaps = 1/157 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I + V + L  RL ++Y G++++I  ++PE
Sbjct: 4   ILGIDPGSRVTGYGVIRQTGRQLEYLGSGVIRTSV-EDLPTRLKRIYSGVSEIILQFQPE 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+E+VF+ K+A + LKLGQAR  AI++     +PV EYA   +K+ V+G+G  DK Q+
Sbjct: 63  MFAIEEVFLAKNANSALKLGQARGAAIVAAVNQNLPVFEYAARLVKQTVVGIGSADKIQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYY 163
             M+  ++  S     DAADALAIA+ HA+     ++
Sbjct: 123 QDMVTRILKLSEKPQADAADALAIAITHAHSIQHSFH 159


>gi|162453353|ref|YP_001615720.1| Holliday junction resolvase RuvC [Sorangium cellulosum 'So ce 56']
 gi|189046083|sp|A9FR00|RUVC_SORC5 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|161163935|emb|CAN95240.1| Holliday Junction Resolvase RuvC [Sorangium cellulosum 'So ce 56']
          Length = 179

 Score =  107 bits (266), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 57/150 (38%), Positives = 88/150 (58%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPG R  GWG++   G  +  V+ G I      + A RL ++ + L  VI +  
Sbjct: 1   MRVLGIDPGSRHLGWGLLVRQGTRIEHVAHGVIDIDTSGTFAARLVEIDDELGKVIASHA 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ AAVE +F  KDA +  KLG AR + +L  A A +P+SEY P  +K+ ++G G  +K 
Sbjct: 61  PDAAAVESLFFAKDAQSAAKLGHARGVVLLRLARAGVPISEYPPALVKRTIVGRGAAEKA 120

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCH 154
           Q+  ++  ++  +     DAADALAIA+ H
Sbjct: 121 QVAQVMTAVLRLAAPPRPDAADALAIAMTH 150


>gi|89256281|ref|YP_513643.1| Holliday junction resolvase [Francisella tularensis subsp.
           holarctica LVS]
 gi|115314733|ref|YP_763456.1| Holliday junction resolvase [Francisella tularensis subsp.
           holarctica OSU18]
 gi|156502347|ref|YP_001428412.1| Holliday junction resolvase [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|167011089|ref|ZP_02276020.1| holliday junction endodeoxyribonuclease [Francisella tularensis
           subsp. holarctica FSC200]
 gi|254367616|ref|ZP_04983637.1| holliday junction endodeoxyribonuclease [Francisella tularensis
           subsp. holarctica 257]
 gi|254369264|ref|ZP_04985276.1| holliday junction endodeoxyribonuclease [Francisella tularensis
           subsp. holarctica FSC022]
 gi|290953116|ref|ZP_06557737.1| Holliday junction resolvase [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295313644|ref|ZP_06804228.1| Holliday junction resolvase [Francisella tularensis subsp.
           holarctica URFT1]
 gi|122325246|sp|Q0BM65|RUVC_FRATO RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|122999753|sp|Q2A3Q9|RUVC_FRATH RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|166233192|sp|A7NBV3|RUVC_FRATF RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|89144112|emb|CAJ79369.1| holliday junction endodeoxyribonuclease [Francisella tularensis
           subsp. holarctica LVS]
 gi|115129632|gb|ABI82819.1| crossover junction endodeoxyribonuclease [Francisella tularensis
           subsp. holarctica OSU18]
 gi|134253427|gb|EBA52521.1| holliday junction endodeoxyribonuclease [Francisella tularensis
           subsp. holarctica 257]
 gi|156252950|gb|ABU61456.1| crossover junction endodeoxyribonuclease [Francisella tularensis
           subsp. holarctica FTNF002-00]
 gi|157122214|gb|EDO66354.1| holliday junction endodeoxyribonuclease [Francisella tularensis
           subsp. holarctica FSC022]
          Length = 171

 Score =  107 bits (266), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 66/160 (41%), Positives = 104/160 (65%), Gaps = 2/160 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++ V  + + +V+SG I      +   RL Q+ +G+T +I  + P 
Sbjct: 3   ILGIDPGSRITGFGVIKVQDNKIYYVASGCI-QITEITTPKRLKQIADGITQIINIYAPT 61

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           EAA+EQ+F+ ++ +  +KLGQAR +A+ + A+  + VSEY+   IK+AV+G G   K Q+
Sbjct: 62  EAAIEQIFMFQNPMGAIKLGQARGVAMCTLAINNLEVSEYSAKQIKQAVVGTGGAAKSQV 121

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
             M++ L+  S    +DAADALAIA+CH YH++    KI+
Sbjct: 122 QHMVQSLLGLSKKPPEDAADALAIAICH-YHSSKSLAKIS 160


>gi|110638579|ref|YP_678789.1| Holliday junction resolvase [Cytophaga hutchinsonii ATCC 33406]
 gi|123058720|sp|Q11T17|RUVC_CYTH3 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|110281260|gb|ABG59446.1| crossover junction endodeoxyribonuclease (Holliday junction
           nuclease) [Cytophaga hutchinsonii ATCC 33406]
          Length = 200

 Score =  107 bits (266), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 53/152 (34%), Positives = 89/152 (58%), Gaps = 1/152 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+G+DPG    G+G++ + G  L  +  G I        A +L +++E ++ +I+ + P+
Sbjct: 14  ILGVDPGTNVMGYGLIAIKGTQLTLIQFGVIHLSKYTDHAIKLSKIFERISLLIEEYHPD 73

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E  F   +  + LKLG+A+ +AI +    ++P+ EYAP  IK++V G G+  K+Q+
Sbjct: 74  EMAIEAPFFGSNVQSMLKLGRAQGVAIAAAISKQVPIFEYAPKKIKQSVTGSGNASKEQV 133

Query: 127 HMML-KMLMPESFFKGKDAADALAIAVCHAYH 157
             ML K+L  +   K  DA DAL +AVCH + 
Sbjct: 134 AAMLSKILFFQEIPKLLDATDALGVAVCHYFQ 165


>gi|145632565|ref|ZP_01788299.1| Holliday junction resolvase [Haemophilus influenzae 3655]
 gi|144986760|gb|EDJ93312.1| Holliday junction resolvase [Haemophilus influenzae 3655]
          Length = 190

 Score =  107 bits (266), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 65/150 (43%), Positives = 99/150 (66%), Gaps = 1/150 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G +L ++ SG I + V + L  RL ++Y G+T++I  ++P+
Sbjct: 4   ILGIDPGSRVTGYGVIRQTGRHLEYLGSGAIRTQV-EDLPTRLKRIYAGVTEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR  AI++     +PV EYA   +K+ V+G+G  DK Q+
Sbjct: 63  MFAIEQVFMAKNADSALKLGQARGTAIVAAVNHDLPVFEYAARLVKQTVVGIGSADKVQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAY 156
             M+  ++  S     DAADALAIA+ HA+
Sbjct: 123 QEMITRILKLSDKPQADAADALAIAITHAH 152


>gi|332534228|ref|ZP_08410073.1| crossover junction endodeoxyribonuclease RuvC [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332036308|gb|EGI72779.1| crossover junction endodeoxyribonuclease RuvC [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 174

 Score =  107 bits (266), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 68/160 (42%), Positives = 97/160 (60%), Gaps = 2/160 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G+V   G    ++ SG I          RL  +Y+G+T +I+ + PE
Sbjct: 4   ILGIDPGSRLTGYGVVAHQGSKFTYLGSGCI-KLADHPFPVRLKMIYQGITQLIEQFSPE 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+E+VF+  +  + LKLGQAR  AI+  A+A +PV EY+   IK+AV+G G  DK Q+
Sbjct: 63  TFAIEKVFMAHNPDSALKLGQARGAAIVGAAMADLPVFEYSARQIKQAVVGNGGADKTQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
             M+K ++        DAADALAIA+CHA H+     K+A
Sbjct: 123 QHMVKNILKLPGTPQADAADALAIAICHA-HSEQNLIKLA 161


>gi|326798986|ref|YP_004316805.1| Crossover junction endodeoxyribonuclease ruvC [Sphingobacterium sp.
           21]
 gi|326549750|gb|ADZ78135.1| Crossover junction endodeoxyribonuclease ruvC [Sphingobacterium sp.
           21]
          Length = 188

 Score =  107 bits (266), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 57/157 (36%), Positives = 90/157 (57%), Gaps = 9/157 (5%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG +  G+G++   G  L  +S G I     ++ A +L +++E  T +I  + P+
Sbjct: 11  ILGIDPGTKVMGYGLIQEKGKQLSLISLGIIKLDHLENQALKLQRIFEKTTSLIDQYHPD 70

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+E  F  K+    LKLG+A+ +A+ +    +I ++EYAP  IK++V G G   K+Q+
Sbjct: 71  CMALEDPFYGKNIQVILKLGRAQGVAMAAALAKKIEIAEYAPRKIKQSVTGNGSASKEQV 130

Query: 127 HMMLKMLM-----PESFFKGKDAADALAIAVCHAYHA 158
             MLK L+     P+ F    DA D LA+AVCHA+  
Sbjct: 131 ASMLKNLLNFKESPQFF----DATDGLAVAVCHAFQG 163


>gi|213855274|ref|ZP_03383514.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
          Length = 127

 Score =  107 bits (266), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 52/125 (41%), Positives = 82/125 (65%), Gaps = 1/125 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I + V   L  RL  +Y G+T++I  ++P+
Sbjct: 4   ILGIDPGSRITGYGVIRQVGRQLTYLGSGCIRTKV-DDLPSRLKLIYAGVTEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR +AI++     +PV EYA   +K+ V+G+G  +K Q+
Sbjct: 63  YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 122

Query: 127 HMMLK 131
             M++
Sbjct: 123 QHMVR 127


>gi|261340248|ref|ZP_05968106.1| crossover junction endodeoxyribonuclease RuvC [Enterobacter
           cancerogenus ATCC 35316]
 gi|288317333|gb|EFC56271.1| crossover junction endodeoxyribonuclease RuvC [Enterobacter
           cancerogenus ATCC 35316]
          Length = 173

 Score =  107 bits (266), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 52/128 (40%), Positives = 84/128 (65%), Gaps = 1/128 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I + V   L  RL  +Y G++++I  ++P+
Sbjct: 4   ILGIDPGSRITGYGVIRQVGRQLTYLGSGCIRTKV-DDLPSRLKLIYAGVSEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR +AI++     +PV EYA   +K+ V+G+G  +K Q+
Sbjct: 63  YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQDLPVFEYAARQVKQTVVGIGSAEKSQV 122

Query: 127 HMMLKMLM 134
             M++ L+
Sbjct: 123 QHMVRTLL 130


>gi|269302405|gb|ACZ32505.1| crossover junction endodeoxyribonuclease RuvC [Chlamydophila
           pneumoniae LPCoLN]
          Length = 168

 Score =  107 bits (266), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 62/158 (39%), Positives = 88/158 (55%), Gaps = 4/158 (2%)

Query: 7   IIGIDPGLRRTGWGIVDVAGD-NLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           IIG+DPG    G+ I+ V     L   S G I       L  R   L+E L+ V+ + +P
Sbjct: 5   IIGVDPGTIVAGYAIIAVEQRYQLRPYSYGAIRLSSDMPLPMRYKTLFEQLSGVLDDTQP 64

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
               +E  FVNK+  +T+KL  AR I +L+ A   IP+ EYAPN  KKAV+G GH  K+Q
Sbjct: 65  NAMVLETQFVNKNPQSTMKLAMARGIVLLAAAQRDIPIFEYAPNVAKKAVVGKGHASKRQ 124

Query: 126 IHMMLKMLM--PESFF-KGKDAADALAIAVCHAYHANS 160
           + +M+  ++  PE      +D ADA A+A+CH + A S
Sbjct: 125 VQVMVSKILNVPEVLHPSNEDIADAFALAICHTHVARS 162


>gi|148284887|ref|YP_001248977.1| Holliday junction resolvase [Orientia tsutsugamushi str. Boryong]
 gi|146740326|emb|CAM80733.1| Crossover junction endodeoxyribonuclease [Orientia tsutsugamushi
           str. Boryong]
          Length = 171

 Score =  107 bits (266), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 54/145 (37%), Positives = 84/145 (57%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDP L  TGWG++ ++   + ++ SG I +  + SL  +L  +   +  +I  + P 
Sbjct: 15  ILGIDPSLVSTGWGVISISDSMVNYIDSGVIKTVSKDSLVLKLGNISLMIEKLITRFNPF 74

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+E+VF+NK+  +++ L QAR   +       I  SEYAPN IKKA++G G  +K Q+
Sbjct: 75  HVAMEEVFINKNYSSSVTLIQARGAIMSVIGRYNIDFSEYAPNKIKKAIVGAGKAEKHQV 134

Query: 127 HMMLKMLMPESFFKGKDAADALAIA 151
             M+K+LM       KD +DALA A
Sbjct: 135 QQMVKLLMHIKKAISKDESDALATA 159


>gi|145628664|ref|ZP_01784464.1| Holliday junction resolvase [Haemophilus influenzae 22.1-21]
 gi|148827466|ref|YP_001292219.1| Holliday junction resolvase [Haemophilus influenzae PittGG]
 gi|166233196|sp|A5UGD0|RUVC_HAEIG RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|144979134|gb|EDJ88820.1| Holliday junction resolvase [Haemophilus influenzae 22.1-21]
 gi|148718708|gb|ABQ99835.1| Holliday junction resolvase [Haemophilus influenzae PittGG]
          Length = 190

 Score =  107 bits (266), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 65/150 (43%), Positives = 99/150 (66%), Gaps = 1/150 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G +L ++ SG I + V + L  RL ++Y G+T++I  ++P+
Sbjct: 4   ILGIDPGSRVTGYGVIRQTGRHLEYLGSGAIRTQV-EDLPTRLKRIYAGVTEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR  AI++     +PV EYA   +K+ V+G+G  DK Q+
Sbjct: 63  MFAIEQVFMAKNADSALKLGQARGTAIVAAVNHDLPVFEYAARLVKQTVVGIGSADKVQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAY 156
             M+  ++  S     DAADALAIA+ HA+
Sbjct: 123 QEMVTRILKLSDKPQADAADALAIAITHAH 152


>gi|254372982|ref|ZP_04988471.1| holliday junction endodeoxyribonuclease [Francisella tularensis
           subsp. novicida GA99-3549]
 gi|151570709|gb|EDN36363.1| holliday junction endodeoxyribonuclease [Francisella novicida
           GA99-3549]
          Length = 171

 Score =  107 bits (266), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 67/163 (41%), Positives = 106/163 (65%), Gaps = 8/163 (4%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQS---LAFRLCQLYEGLTDVIKNW 63
           I+GIDPG R TG+G++ V  + + +V+SG    C+R +      RL Q+ +G+T +I  +
Sbjct: 3   ILGIDPGSRITGFGVIKVQENKIYYVASG----CIRITEITTPKRLKQIADGITQIINIY 58

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P EAA+EQ+F+ ++ +  +KLGQAR +A+ + A+  + VSEY+   IK+AV+G G   K
Sbjct: 59  APTEAAIEQIFMFQNPMGAIKLGQARGVAMCTLAINNLEVSEYSAKQIKQAVVGTGGAAK 118

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
            Q+  M++ L+  S    +DAADALAIA+CH YH++    KI+
Sbjct: 119 SQVQHMVQSLLGLSKKPPEDAADALAIAICH-YHSSKSLAKIS 160


>gi|114321640|ref|YP_743323.1| Holliday junction resolvase [Alkalilimnicola ehrlichii MLHE-1]
 gi|122310890|sp|Q0A5Q4|RUVC_ALHEH RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|114228034|gb|ABI57833.1| crossover junction endodeoxyribonuclease RuvC [Alkalilimnicola
           ehrlichii MLHE-1]
          Length = 165

 Score =  107 bits (266), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 69/157 (43%), Positives = 97/157 (61%), Gaps = 7/157 (4%)

Query: 6   RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVR---QSLAFRLCQLYEGLTDVIKN 62
           RI+GIDPG R TG+G+V+ +G     V+SG    CVR        RL  LY  L++++  
Sbjct: 3   RILGIDPGSRITGYGVVEGSGSAPRHVASG----CVRLPTGPFPDRLRVLYRALSELLAQ 58

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
            RPE A VEQVFV+++  + LKLGQAR  AI +   A +PV+EY P  IK+A++G G   
Sbjct: 59  HRPEAAVVEQVFVSRNPDSALKLGQARGAAICACVNAGLPVAEYTPGEIKQALVGHGRAG 118

Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHAN 159
           K Q+  M++ML+       +DA DALA A+CH + A+
Sbjct: 119 KAQVGYMVRMLLRLDATPAEDAGDALAAALCHLHQAD 155


>gi|74311807|ref|YP_310226.1| Holliday junction resolvase [Shigella sonnei Ss046]
 gi|110287674|sp|Q3Z2M1|RUVC_SHISS RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|73855284|gb|AAZ87991.1| Holliday junction nuclease [Shigella sonnei Ss046]
 gi|323165013|gb|EFZ50803.1| crossover junction endodeoxyribonuclease RuvC [Shigella sonnei 53G]
          Length = 173

 Score =  107 bits (266), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 52/128 (40%), Positives = 83/128 (64%), Gaps = 1/128 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R  G+G++   G  L ++ SG I + V   L  RL  +Y G+T++I  ++P+
Sbjct: 4   ILGIDPGSRVIGYGVIRQVGRQLSYLGSGCIRTKV-DDLPSRLKLIYAGVTEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR +AI++     +PV EYA   +K+ V+G+G  +K Q+
Sbjct: 63  YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 122

Query: 127 HMMLKMLM 134
             M++ L+
Sbjct: 123 QHMVRTLL 130


>gi|118497618|ref|YP_898668.1| holliday junction endodeoxyribonuclease [Francisella tularensis
           subsp. novicida U112]
 gi|134302040|ref|YP_001122009.1| Holliday junction resolvase [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|187931871|ref|YP_001891856.1| Holliday junction resolvase [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|195536319|ref|ZP_03079326.1| crossover junction endodeoxyribonuclease RuvC [Francisella
           tularensis subsp. novicida FTE]
 gi|224456849|ref|ZP_03665322.1| Holliday junction resolvase [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254374433|ref|ZP_04989915.1| hypothetical protein FTDG_00602 [Francisella novicida GA99-3548]
 gi|110287673|sp|Q5NH18|RUVC_FRATT RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|166233193|sp|A0Q6P9|RUVC_FRATN RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|166233194|sp|A4IY87|RUVC_FRATW RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|187611415|sp|Q14IH0|RUVC_FRAT1 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|238691572|sp|B2SH69|RUVC_FRATM RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|118423524|gb|ABK89914.1| holliday junction endodeoxyribonuclease [Francisella novicida U112]
 gi|134049817|gb|ABO46888.1| crossover junction endodeoxyribonuclease RuvC [Francisella
           tularensis subsp. tularensis WY96-3418]
 gi|151572153|gb|EDN37807.1| hypothetical protein FTDG_00602 [Francisella novicida GA99-3548]
 gi|187712780|gb|ACD31077.1| crossover junction endodeoxyribonuclease RuvC [Francisella
           tularensis subsp. mediasiatica FSC147]
 gi|194372796|gb|EDX27507.1| crossover junction endodeoxyribonuclease RuvC [Francisella
           tularensis subsp. novicida FTE]
 gi|332678323|gb|AEE87452.1| Crossover junction endodeoxyribonuclease RuvC [Francisella cf.
           novicida Fx1]
          Length = 171

 Score =  106 bits (265), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 67/163 (41%), Positives = 106/163 (65%), Gaps = 8/163 (4%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQS---LAFRLCQLYEGLTDVIKNW 63
           I+GIDPG R TG+G++ V  + + +V+SG    C+R +      RL Q+ +G+T +I  +
Sbjct: 3   ILGIDPGSRITGFGVIKVQDNKIYYVASG----CIRITEITTPKRLKQIADGITQIINIY 58

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P EAA+EQ+F+ ++ +  +KLGQAR +A+ + A+  + VSEY+   IK+AV+G G   K
Sbjct: 59  APTEAAIEQIFMFQNPMGAIKLGQARGVAMCTLAINNLEVSEYSAKQIKQAVVGTGGAAK 118

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
            Q+  M++ L+  S    +DAADALAIA+CH YH++    KI+
Sbjct: 119 SQVQHMVQSLLGLSKKPPEDAADALAIAICH-YHSSKSLAKIS 160


>gi|54113895|gb|AAV29581.1| NT02FT1045 [synthetic construct]
          Length = 178

 Score =  106 bits (265), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 67/163 (41%), Positives = 106/163 (65%), Gaps = 8/163 (4%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQS---LAFRLCQLYEGLTDVIKNW 63
           I+GIDPG R TG+G++ V  + + +V+SG    C+R +      RL Q+ +G+T +I  +
Sbjct: 10  ILGIDPGSRITGFGVIKVQDNKIYYVASG----CIRITEITTPKRLKQIADGITQIINIY 65

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P EAA+EQ+F+ ++ +  +KLGQAR +A+ + A+  + VSEY+   IK+AV+G G   K
Sbjct: 66  APTEAAIEQIFMFQNPMGAIKLGQARGVAMCTLAINNLEVSEYSAKQIKQAVVGTGGAAK 125

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
            Q+  M++ L+  S    +DAADALAIA+CH YH++    KI+
Sbjct: 126 SQVQHMVQSLLGLSKKPPEDAADALAIAICH-YHSSKSLAKIS 167


>gi|56707778|ref|YP_169674.1| Holliday junction resolvase [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110670249|ref|YP_666806.1| Holliday junction resolvase [Francisella tularensis subsp.
           tularensis FSC198]
 gi|254370277|ref|ZP_04986282.1| holliday junction endodeoxyribonuclease [Francisella tularensis
           subsp. tularensis FSC033]
 gi|254874590|ref|ZP_05247300.1| holliday junction endodeoxyribonuclease [Francisella tularensis
           subsp. tularensis MA00-2987]
 gi|56604270|emb|CAG45289.1| holliday junction endodeoxyribonuclease [Francisella tularensis
           subsp. tularensis SCHU S4]
 gi|110320582|emb|CAL08672.1| holliday junction endodeoxyribonuclease [Francisella tularensis
           subsp. tularensis FSC198]
 gi|151568520|gb|EDN34174.1| holliday junction endodeoxyribonuclease [Francisella tularensis
           subsp. tularensis FSC033]
 gi|254840589|gb|EET19025.1| holliday junction endodeoxyribonuclease [Francisella tularensis
           subsp. tularensis MA00-2987]
 gi|282158950|gb|ADA78341.1| holliday junction endodeoxyribonuclease [Francisella tularensis
           subsp. tularensis NE061598]
          Length = 178

 Score =  106 bits (265), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 67/163 (41%), Positives = 106/163 (65%), Gaps = 8/163 (4%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQS---LAFRLCQLYEGLTDVIKNW 63
           I+GIDPG R TG+G++ V  + + +V+SG    C+R +      RL Q+ +G+T +I  +
Sbjct: 10  ILGIDPGSRITGFGVIKVQDNKIYYVASG----CIRITEITTPKRLKQIADGITQIINIY 65

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P EAA+EQ+F+ ++ +  +KLGQAR +A+ + A+  + VSEY+   IK+AV+G G   K
Sbjct: 66  APTEAAIEQIFMFQNPMGAIKLGQARGVAMCTLAINNLEVSEYSAKQIKQAVVGTGGAAK 125

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
            Q+  M++ L+  S    +DAADALAIA+CH YH++    KI+
Sbjct: 126 SQVQHMVQSLLGLSKKPPEDAADALAIAICH-YHSSKSLAKIS 167


>gi|296132698|ref|YP_003639945.1| crossover junction endodeoxyribonuclease RuvC [Thermincola sp. JR]
 gi|296031276|gb|ADG82044.1| crossover junction endodeoxyribonuclease RuvC [Thermincola potens
           JR]
          Length = 166

 Score =  106 bits (265), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 61/161 (37%), Positives = 100/161 (62%), Gaps = 8/161 (4%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+G+DPG   TG+G++ V G+ L  VS G I +     L  RL ++   ++ +I+ ++P 
Sbjct: 3   ILGVDPGTAITGYGLIRVQGNKLDAVSYGCIRTDAGLPLHQRLQKINSEISRLIREFKPT 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+E++F NK+    L +GQAR +A+L+ A A + ++EY P  +K+AV+G G  DK Q+
Sbjct: 63  HFAIEELFFNKNTRTALSVGQARGVALLAAANAGLEIAEYTPLQVKQAVVGYGRADKNQV 122

Query: 127 HMMLKML--MPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
             M+K +  +PE   K  D ADALA+A+CH++     +YK+
Sbjct: 123 QYMVKTILCLPE-IPKPDDTADALAVAICHSH-----FYKM 157


>gi|326336086|ref|ZP_08202258.1| crossover junction endoribonuclease subunit C [Capnocytophaga sp.
           oral taxon 338 str. F0234]
 gi|325691595|gb|EGD33562.1| crossover junction endoribonuclease subunit C [Capnocytophaga sp.
           oral taxon 338 str. F0234]
          Length = 181

 Score =  106 bits (265), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 52/153 (33%), Positives = 90/153 (58%), Gaps = 1/153 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG    G+GI+ V  + + FV    ++     +   +L  ++E  T++I N++P+
Sbjct: 5   ILGIDPGTTVMGFGIIQVIKNQMKFVQMNELLLNKYDNHYLKLKLIFERTTELIDNYKPD 64

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E  F  K+  + LKLG+A+ +A+ +     +P++EY P  +K A+ G G+  K+Q+
Sbjct: 65  ELAIEAPFFGKNVQSMLKLGRAQGVAMAAGLAREVPITEYEPKKVKMAITGNGNATKEQV 124

Query: 127 HMMLKMLMP-ESFFKGKDAADALAIAVCHAYHA 158
             ML+ L+  + F    DA D LA+AVCH ++ 
Sbjct: 125 AKMLQQLLNFKDFPSHLDATDGLAVAVCHFFNG 157


>gi|270307811|ref|YP_003329869.1| crossover junction endodeoxyribonuclease [Dehalococcoides sp. VS]
 gi|270153703|gb|ACZ61541.1| crossover junction endodeoxyribonuclease [Dehalococcoides sp. VS]
          Length = 165

 Score =  106 bits (265), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 60/165 (36%), Positives = 101/165 (61%), Gaps = 3/165 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPG    G+G+++ A D L  +   ++       +  RL  +Y+GL + I+ ++
Sbjct: 1   MRILGIDPGTMVVGYGVIEAADDELSLIGFSSLTPPASAPIPQRLAYIYKGLVEAIELYQ 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+E AVE  F +K+  + L +G+A+A+A+L+ A   + V+EY+P  IK  V G G+  K+
Sbjct: 61  PDEVAVESPFADKNIKSALAIGKAQAVALLAAANHSLSVTEYSPACIKSRVSGSGNASKE 120

Query: 125 QIHMMLKMLMP-ESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
           QI  M+++L+      +  DAADALA+A+CH  H++  +  I SQ
Sbjct: 121 QIQEMVRLLLNLAEIPQPNDAADALAVAICH--HSHRAFANITSQ 163


>gi|240949851|ref|ZP_04754177.1| Holliday junction resolvase [Actinobacillus minor NM305]
 gi|257464831|ref|ZP_05629202.1| Holliday junction resolvase [Actinobacillus minor 202]
 gi|240295705|gb|EER46407.1| Holliday junction resolvase [Actinobacillus minor NM305]
 gi|257450491|gb|EEV24534.1| Holliday junction resolvase [Actinobacillus minor 202]
          Length = 192

 Score =  106 bits (265), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 65/150 (43%), Positives = 98/150 (65%), Gaps = 1/150 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G +L ++ SG I + V   L  RL ++Y G+T++I  ++P+
Sbjct: 4   ILGIDPGSRITGYGVIRQTGKHLEYLGSGAIRTSV-DDLPTRLKRIYAGVTEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR  AI++     +PV EYA   +K+ V+G+G  DK Q+
Sbjct: 63  MFAIEQVFMAKNADSALKLGQARGTAIVAAVNHDLPVFEYAARLVKQTVVGIGSADKVQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAY 156
             M+  ++  S     DAADALAIA+ HA+
Sbjct: 123 QDMVTRILQLSAKPQADAADALAIAITHAH 152


>gi|302335490|ref|YP_003800697.1| crossover junction endodeoxyribonuclease RuvC [Olsenella uli DSM
           7084]
 gi|301319330|gb|ADK67817.1| crossover junction endodeoxyribonuclease RuvC [Olsenella uli DSM
           7084]
          Length = 218

 Score =  106 bits (265), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 57/151 (37%), Positives = 91/151 (60%), Gaps = 3/151 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSS-GTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           I+GIDPGL  TGWG+++  G  LC   + G I +   ++L  RL  +Y+GL++ I  ++P
Sbjct: 3   ILGIDPGLANTGWGVIETRG-TLCRARAYGCISTSSSETLDRRLGAIYDGLSEAIGTYQP 61

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
            + A+E++F  ++  + L    AR  AI++ +   + + EY P  IK+AV+G G  DK+Q
Sbjct: 62  SQLAIEKIFFGENTRSALATAHARGAAIVACSRMGLEMGEYTPMQIKQAVVGTGSADKRQ 121

Query: 126 -IHMMLKMLMPESFFKGKDAADALAIAVCHA 155
            I+M+  +L  +   +    ADALA AVCHA
Sbjct: 122 VIYMVRNILDLDHDPRPDHCADALAAAVCHA 152


>gi|241563433|ref|XP_002401702.1| crossover junction endodeoxyribonuclease ruvC, putative [Ixodes
           scapularis]
 gi|215501894|gb|EEC11388.1| crossover junction endodeoxyribonuclease ruvC, putative [Ixodes
           scapularis]
          Length = 159

 Score =  106 bits (265), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 56/154 (36%), Positives = 85/154 (55%), Gaps = 1/154 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           ++GIDP L   GW +V      L +++SG I +  +  +  RL  +   L  VI  ++P 
Sbjct: 5   VLGIDPALGSLGWAVVAKETAKLKYLASGIIKTNSKDEIHHRLAFINSTLEKVILEYQPN 64

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
            AA+E+ FVN ++V +LKLG AR   +       + + E+ PNT+KK V G GH +K QI
Sbjct: 65  MAAIEETFVNTNSVTSLKLGYARGAIMSLIGRYNLGLREFKPNTVKKTVTGYGHAEKDQI 124

Query: 127 HMMLKMLMP-ESFFKGKDAADALAIAVCHAYHAN 159
             M+K+L+P  S     D AD++AIA  +    N
Sbjct: 125 LHMIKLLLPGTSLITNSDEADSVAIAYTYLVTKN 158


>gi|157803304|ref|YP_001491853.1| Holliday junction resolvase [Rickettsia canadensis str. McKiel]
 gi|157784567|gb|ABV73068.1| Holliday junction resolvase [Rickettsia canadensis str. McKiel]
          Length = 180

 Score =  106 bits (265), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 54/146 (36%), Positives = 86/146 (58%), Gaps = 1/146 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           ++GIDP L   GW +V      L +++SGTI +  +  +  RL  +   L  VI  ++P 
Sbjct: 26  VLGIDPALGSLGWAVVVRQSTKLKYLASGTIKTNSKDEIHHRLAFINITLEKVILEYQPN 85

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
            AA+E++FVN +++ +LKLG AR + +       + + E+ PN +KK+V G GH +K+QI
Sbjct: 86  MAAIEEIFVNTNSLTSLKLGYARGVIMSLIGRYNLGLREFKPNMVKKSVTGYGHAEKEQI 145

Query: 127 HMMLKMLMP-ESFFKGKDAADALAIA 151
             M+K+L+P  S     D  DA+AIA
Sbjct: 146 LHMIKLLLPGTSLITNSDEGDAIAIA 171


>gi|16272268|ref|NP_438480.1| Holliday junction resolvase [Haemophilus influenzae Rd KW20]
 gi|260581218|ref|ZP_05849037.1| crossover junction endodeoxyribonuclease RuvC [Haemophilus
           influenzae RdAW]
 gi|1173332|sp|P44633|RUVC_HAEIN RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|1573284|gb|AAC21978.1| crossover junction endodeoxyribonuclease (ruvC) [Haemophilus
           influenzae Rd KW20]
 gi|260092143|gb|EEW76087.1| crossover junction endodeoxyribonuclease RuvC [Haemophilus
           influenzae RdAW]
          Length = 190

 Score =  106 bits (265), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 65/150 (43%), Positives = 98/150 (65%), Gaps = 1/150 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G +L ++ SG I + V + L  RL ++Y G+T++I  ++P 
Sbjct: 4   ILGIDPGSRVTGYGVIRQTGKHLEYLGSGAIRTQV-EDLPTRLKRIYAGVTEIITQFQPN 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR  AI++     +PV EYA   +K+ V+G+G  DK Q+
Sbjct: 63  MFAIEQVFMAKNADSALKLGQARGTAIVAAVNNDLPVFEYAARLVKQTVVGIGSADKVQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAY 156
             M+  ++  S     DAADALAIA+ HA+
Sbjct: 123 QEMVTRILKLSDKPQADAADALAIAITHAH 152


>gi|315187234|gb|EFU20991.1| crossover junction endodeoxyribonuclease RuvC [Spirochaeta
           thermophila DSM 6578]
          Length = 169

 Score =  106 bits (265), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 94/165 (56%), Gaps = 1/165 (0%)

Query: 6   RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           R +GIDPGL  TG+G+++  G    ++ +GTI +    + + RL +++  + +++  + P
Sbjct: 3   RYLGIDPGLATTGYGVIETDGRGHKYIIAGTIRTSSGHTQSERLLKIFRHVQELLLKYEP 62

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
           E   +E++F  ++  +   + QA  +  L+ A+  IPV  YAP  +K+A++G G  DK +
Sbjct: 63  EAIIMEELFFARNTTSAFYVAQAMGVVSLAAAMEDIPVYTYAPQMVKQAIVGHGRADKAE 122

Query: 126 IHMMLKMLMPESFFKGKD-AADALAIAVCHAYHANSGYYKIASQD 169
           I   L++L+     K  D A+DALAIA+CH +   + +     +D
Sbjct: 123 IQRFLRLLLNLPDTKMSDHASDALAIALCHVHQHGTPFATQGEED 167


>gi|239948354|ref|ZP_04700107.1| crossover junction endodeoxyribonuclease RuvC [Rickettsia
           endosymbiont of Ixodes scapularis]
 gi|239922630|gb|EER22654.1| crossover junction endodeoxyribonuclease RuvC [Rickettsia
           endosymbiont of Ixodes scapularis]
          Length = 172

 Score =  106 bits (265), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 56/154 (36%), Positives = 85/154 (55%), Gaps = 1/154 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           ++GIDP L   GW +V      L +++SG I +  +  +  RL  +   L  VI  ++P 
Sbjct: 18  VLGIDPALGSLGWAVVAKETAKLKYLASGIIKTNSKDEIHHRLAFINSTLEKVILEYQPN 77

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
            AA+E+ FVN ++V +LKLG AR   +       + + E+ PNT+KK V G GH +K QI
Sbjct: 78  MAAIEETFVNTNSVTSLKLGYARGAIMSLIGRYNLGLREFKPNTVKKTVTGYGHAEKDQI 137

Query: 127 HMMLKMLMP-ESFFKGKDAADALAIAVCHAYHAN 159
             M+K+L+P  S     D AD++AIA  +    N
Sbjct: 138 LHMIKLLLPGTSLITNSDEADSVAIAYTYLVTKN 171


>gi|148825407|ref|YP_001290160.1| Holliday junction resolvase [Haemophilus influenzae PittEE]
 gi|166233195|sp|A5UAH6|RUVC_HAEIE RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|148715567|gb|ABQ97777.1| Holliday junction resolvase [Haemophilus influenzae PittEE]
 gi|309972526|gb|ADO95727.1| Holliday junction resolvasome, endodeoxyribonuclease subunit
           [Haemophilus influenzae R2846]
          Length = 190

 Score =  106 bits (264), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 65/150 (43%), Positives = 99/150 (66%), Gaps = 1/150 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G +L ++ SG I + V + L  RL ++Y G+T++I  ++P+
Sbjct: 4   ILGIDPGSRVTGYGVIRQTGRHLEYLGSGAIRTQV-EDLPTRLKRIYAGVTEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR  AI++     +PV EYA   +K+ V+G+G  DK Q+
Sbjct: 63  MFAIEQVFMAKNADSALKLGQARGTAIVAAVNHDLPVFEYAARLVKQTVVGIGSADKVQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAY 156
             M+  ++  S     DAADALAIA+ HA+
Sbjct: 123 QEMVTRILKLSDKPQTDAADALAIAITHAH 152


>gi|114799962|ref|YP_758879.1| Holliday junction resolvase [Hyphomonas neptunium ATCC 15444]
 gi|122942819|sp|Q0C5W4|RUVC_HYPNA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|114740136|gb|ABI78261.1| crossover junction endodeoxyribonuclease RuvC [Hyphomonas neptunium
           ATCC 15444]
          Length = 167

 Score =  106 bits (264), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 55/137 (40%), Positives = 86/137 (62%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M   IRI+GIDPGLR TGWG+++ +G  L  ++ G I      S+A RL  ++E + ++ 
Sbjct: 1   MSTPIRILGIDPGLRHTGWGVIEQSGARLVHIAHGVIDPPTDLSMAERLGHIFEAVGELA 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
           ++  P  A VE+  VN +  + LKLGQAR  A+ + A+A + V+E+AP  IK +V+G G 
Sbjct: 61  RHHAPHAAGVEETLVNANPRSALKLGQARGAAMAALAMAGVSVAEFAPRQIKLSVVGTGT 120

Query: 121 GDKKQIHMMLKMLMPES 137
            DK Q+  M++ L+P +
Sbjct: 121 ADKDQVKFMVQRLLPRA 137


>gi|303233208|ref|ZP_07319881.1| crossover junction endodeoxyribonuclease RuvC [Atopobium vaginae
           PB189-T1-4]
 gi|302480793|gb|EFL43880.1| crossover junction endodeoxyribonuclease RuvC [Atopobium vaginae
           PB189-T1-4]
          Length = 217

 Score =  106 bits (264), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 56/149 (37%), Positives = 86/149 (57%), Gaps = 1/149 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPGL  TGWGI++  G      + G I +   +SL  RL  +Y+G+   I  + P 
Sbjct: 3   ILGIDPGLAHTGWGIIETKGSVCRARAYGCITTHAAESLDRRLGSIYDGIEQAICTYAPA 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ- 125
           E A+E++F  ++  + +    AR  A+++ A A I + EY P  IK+AV+G G  DK+Q 
Sbjct: 63  EVAIEKIFFGENTASAIATAHARGAALVACARAGIVLGEYTPMQIKQAVVGTGSADKRQV 122

Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCH 154
           I+M+  +L  +   +    ADALA A+CH
Sbjct: 123 IYMVRTILKLDHDPRPDHCADALAAAICH 151


>gi|306821004|ref|ZP_07454623.1| crossover junction endoribonuclease subunit C [Eubacterium yurii
           subsp. margaretiae ATCC 43715]
 gi|304550945|gb|EFM38917.1| crossover junction endoribonuclease subunit C [Eubacterium yurii
           subsp. margaretiae ATCC 43715]
          Length = 163

 Score =  106 bits (264), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 91/154 (59%), Gaps = 1/154 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           ++G+DPG+   G+GI++   ++   +S G I +  +  L+ R+  +++ + ++I+ +  E
Sbjct: 3   VLGVDPGIAIVGYGIIEYKNNSFKVLSYGAITTPAKTKLSSRIKIIHDDINELIRTYDIE 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+E++F NK+    + +  AR + ++S     IPV EY P  +K+ V+G G  +KKQI
Sbjct: 63  ALAIEELFFNKNVKTAIDVAHARGVIMVSAVNNNIPVYEYTPLQVKQGVVGYGRAEKKQI 122

Query: 127 HMMLKMLMP-ESFFKGKDAADALAIAVCHAYHAN 159
             M+K+++   S  K  D AD LA+A+CH +  N
Sbjct: 123 QEMVKIILNLNSIPKPDDVADGLALAICHCHSIN 156


>gi|114570974|ref|YP_757654.1| Holliday junction endonuclease RuvC [Maricaulis maris MCS10]
 gi|122315333|sp|Q0ALX7|RUVC_MARMM RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|114341436|gb|ABI66716.1| Holliday junction endonuclease RuvC [Maricaulis maris MCS10]
          Length = 166

 Score =  106 bits (264), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 72/157 (45%), Positives = 105/157 (66%), Gaps = 1/157 (0%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M  S+RI+GIDPGLRR GWG++ V G  L  ++ G +       L+ RL  L+  + D++
Sbjct: 1   MALSVRILGIDPGLRRMGWGVIRVEGSRLSAIAHGVVTPPTAAPLSERLMHLFNSVGDLV 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
           +   P+EAA+E+ F+  +A + LKLG ARA A+L+PA A +PV+EYA   +KK+V+G G 
Sbjct: 61  RQHGPDEAAIEEAFMAANAASALKLGHARAAAMLAPARAGLPVAEYAARLVKKSVVGTGA 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYH 157
            DK Q+  M+ +L+P +     DAADALAIA+CHA+H
Sbjct: 121 ADKAQVAAMVGILLPGTKAT-ADAADALAIAICHAHH 156


>gi|319775818|ref|YP_004138306.1| crossover junction endodeoxyribonuclease RuvC [Haemophilus
           influenzae F3047]
 gi|329123662|ref|ZP_08252222.1| crossover junction endodeoxyribonuclease RuvC [Haemophilus
           aegyptius ATCC 11116]
 gi|317450409|emb|CBY86625.1| crossover junction endodeoxyribonuclease RuvC [Haemophilus
           influenzae F3047]
 gi|327469861|gb|EGF15326.1| crossover junction endodeoxyribonuclease RuvC [Haemophilus
           aegyptius ATCC 11116]
          Length = 190

 Score =  106 bits (264), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 65/150 (43%), Positives = 98/150 (65%), Gaps = 1/150 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G +L ++ SG I + V + L  RL ++Y G+T++I  ++P 
Sbjct: 4   ILGIDPGSRVTGYGVIRQTGRHLEYLGSGAIRTQV-EDLPTRLKRIYAGVTEIITQFQPN 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR  AI++     +PV EYA   +K+ V+G+G  DK Q+
Sbjct: 63  MFAIEQVFMAKNADSALKLGQARGTAIVAAVNHDLPVFEYAARLVKQTVVGIGSADKVQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAY 156
             M+  ++  S     DAADALAIA+ HA+
Sbjct: 123 QEMVTRILKLSDKPQADAADALAIAITHAH 152


>gi|145634687|ref|ZP_01790396.1| Holliday junction resolvase [Haemophilus influenzae PittAA]
 gi|145640258|ref|ZP_01795842.1| Holliday junction resolvase [Haemophilus influenzae R3021]
 gi|260582588|ref|ZP_05850378.1| crossover junction endodeoxyribonuclease RuvC [Haemophilus
           influenzae NT127]
 gi|319896646|ref|YP_004134839.1| crossover junction endodeoxyribonuclease ruvc [Haemophilus
           influenzae F3031]
 gi|145268232|gb|EDK08227.1| Holliday junction resolvase [Haemophilus influenzae PittAA]
 gi|145274844|gb|EDK14706.1| Holliday junction resolvase [Haemophilus influenzae 22.4-21]
 gi|260094399|gb|EEW78297.1| crossover junction endodeoxyribonuclease RuvC [Haemophilus
           influenzae NT127]
 gi|317432148|emb|CBY80499.1| crossover junction endodeoxyribonuclease RuvC [Haemophilus
           influenzae F3031]
          Length = 190

 Score =  106 bits (264), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 65/150 (43%), Positives = 98/150 (65%), Gaps = 1/150 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G +L ++ SG I + V + L  RL ++Y G+T++I  ++P 
Sbjct: 4   ILGIDPGSRVTGYGVIRQTGRHLEYLGSGAIRTQV-EDLPTRLKRIYAGVTEIITQFQPN 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR  AI++     +PV EYA   +K+ V+G+G  DK Q+
Sbjct: 63  MFAIEQVFMAKNADSALKLGQARGTAIVAAVNHDLPVFEYAARLVKQTVVGIGSADKVQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAY 156
             M+  ++  S     DAADALAIA+ HA+
Sbjct: 123 QEMVTRILKLSDKPQADAADALAIAITHAH 152


>gi|68248921|ref|YP_248033.1| Holliday junction resolvase [Haemophilus influenzae 86-028NP]
 gi|81336668|sp|Q4QNM4|RUVC_HAEI8 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|68057120|gb|AAX87373.1| crossover junction endodeoxyribonuclease RuvC [Haemophilus
           influenzae 86-028NP]
          Length = 190

 Score =  106 bits (264), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 65/150 (43%), Positives = 98/150 (65%), Gaps = 1/150 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G +L ++ SG I + V + L  RL ++Y G+T++I  ++P 
Sbjct: 4   ILGIDPGSRVTGYGVIRQTGRHLEYLGSGAIRTQV-EDLPTRLKRIYAGVTEIITQFQPN 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR  AI++     +PV EYA   +K+ V+G+G  DK Q+
Sbjct: 63  MFAIEQVFMAKNADSALKLGQARGTAIVAAVNNDLPVFEYAARLVKQTVVGIGSADKVQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAY 156
             M+  ++  S     DAADALAIA+ HA+
Sbjct: 123 QEMVTRILKLSDKPQADAADALAIAITHAH 152


>gi|88801305|ref|ZP_01116833.1| Holliday junction resolvase [Polaribacter irgensii 23-P]
 gi|88781963|gb|EAR13140.1| Holliday junction resolvase [Polaribacter irgensii 23-P]
          Length = 211

 Score =  106 bits (264), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 58/156 (37%), Positives = 89/156 (57%), Gaps = 3/156 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG    G+G++ V G  + F+    ++         +L  ++E   ++I  + P+
Sbjct: 34  ILGIDPGTTIMGFGLIKVIGKKMEFIQMNELMLKKYDDHYLKLKLIFERTIELIDTYNPD 93

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E  F  K+  + LKLG+A+ +A+ +     IP++EY P  IK AV G G+  K+Q+
Sbjct: 94  EIAIEAPFFGKNVQSMLKLGRAQGVAMAAGLSREIPITEYLPKKIKMAVTGNGNASKEQV 153

Query: 127 HMMLKMLMP-ESFFKGKDAADALAIAVCHAYHANSG 161
            MMLK L+  ++  K  DA D LA AVCH Y  NSG
Sbjct: 154 AMMLKSLLNLKTLPKNLDATDGLAAAVCHFY--NSG 187


>gi|237809452|ref|YP_002893892.1| crossover junction endodeoxyribonuclease RuvC [Tolumonas auensis
           DSM 9187]
 gi|259495696|sp|C4LBN2|RUVC_TOLAT RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|237501713|gb|ACQ94306.1| crossover junction endodeoxyribonuclease RuvC [Tolumonas auensis
           DSM 9187]
          Length = 173

 Score =  106 bits (264), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 63/153 (41%), Positives = 102/153 (66%), Gaps = 7/153 (4%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQS---LAFRLCQLYEGLTDVIKNW 63
           I+GIDPG R TG+G++      + ++ SG    C+R S   L+ +L Q+Y+G++++I  +
Sbjct: 4   ILGIDPGSRITGYGVIRQQAGKVEYLGSG----CIRTSGEQLSDKLKQIYDGISEIILQF 59

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +P+  A+EQVF+ K+  + LKLGQAR  AI++   A +PV+EYA   +K++V+G G  DK
Sbjct: 60  KPDLFAIEQVFMAKNPDSALKLGQARGSAIVAAVNAGLPVAEYAARQVKQSVVGTGAADK 119

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
           +Q+  M+K L+        DAADALA+A+CH++
Sbjct: 120 EQVQHMVKQLLKLPACPQADAADALAVALCHSH 152


>gi|197284985|ref|YP_002150857.1| Holliday junction resolvase [Proteus mirabilis HI4320]
 gi|227355389|ref|ZP_03839790.1| Holliday junction nuclease [Proteus mirabilis ATCC 29906]
 gi|238693145|sp|B4ETP6|RUVC_PROMH RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|194682472|emb|CAR42405.1| Holliday junction nuclease [Proteus mirabilis HI4320]
 gi|227164613|gb|EEI49484.1| Holliday junction nuclease [Proteus mirabilis ATCC 29906]
          Length = 173

 Score =  106 bits (264), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 54/131 (41%), Positives = 85/131 (64%), Gaps = 1/131 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I + V   L  RL ++Y G++++I  + P+
Sbjct: 4   ILGIDPGSRVTGYGVIRQQGRQLIYLGSGCIRTQV-PDLPSRLKRIYAGVSEIITQFSPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             +VEQVF+ K+A + LKLGQAR +AIL+     +PV EYA   +K++V+G G  DK Q+
Sbjct: 63  VFSVEQVFMAKNADSALKLGQARGVAILAAVNNDLPVFEYAARQVKQSVVGTGGADKSQV 122

Query: 127 HMMLKMLMPES 137
             M++ ++  S
Sbjct: 123 QHMVRSILKLS 133


>gi|83590538|ref|YP_430547.1| crossover junction endodeoxyribonuclease RuvC [Moorella
           thermoacetica ATCC 39073]
 gi|123766740|sp|Q2RHT5|RUVC_MOOTA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|83573452|gb|ABC20004.1| crossover junction endodeoxyribonuclease RuvC [Moorella
           thermoacetica ATCC 39073]
          Length = 167

 Score =  106 bits (264), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 58/157 (36%), Positives = 91/157 (57%), Gaps = 9/157 (5%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVR----QSLAFRLCQLYEGLTDVIKN 62
           I+GIDPG    G+G+V+         +   +  C+R    +    RL  +Y G+ ++I+ 
Sbjct: 3   ILGIDPGTAIVGYGLVEARAGQ----TRALVYDCIRTPAGEDPCRRLATIYAGIRELIER 58

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
            +PE  AVE++F NK++   L +GQAR + +L+ A   +PV+EY P  +K+AV G G   
Sbjct: 59  LQPETMAVEELFFNKNSKTALAVGQARGVILLAAAHTGLPVAEYTPLEVKQAVAGFGRAP 118

Query: 123 KKQIHMMLKMLMP-ESFFKGKDAADALAIAVCHAYHA 158
           K+Q+  M++ L+  E   +  D ADALA+AVCHA  A
Sbjct: 119 KEQVQRMVQALLGLEEKPRPDDVADALAVAVCHASFA 155


>gi|156933559|ref|YP_001437475.1| Holliday junction resolvase [Cronobacter sakazakii ATCC BAA-894]
 gi|166233191|sp|A7MEA1|RUVC_ENTS8 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|156531813|gb|ABU76639.1| hypothetical protein ESA_01379 [Cronobacter sakazakii ATCC BAA-894]
          Length = 173

 Score =  106 bits (264), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 65/153 (42%), Positives = 97/153 (63%), Gaps = 7/153 (4%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQS---LAFRLCQLYEGLTDVIKNW 63
           I+GIDPG R TG+G++   G  L ++ SG    C+R S   L  RL  +Y G++++I  +
Sbjct: 4   ILGIDPGSRVTGYGVIRQTGRQLTYLGSG----CIRTSVTDLPSRLKLIYAGVSEIITQF 59

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RP+  A+EQVF+ K+A + LKLGQAR  AI++     +PV EYA   +K+ V+G+G  +K
Sbjct: 60  RPDYFAIEQVFMAKNADSALKLGQARGAAIVAAVNHDLPVFEYAARQVKQTVVGIGSAEK 119

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
            Q+  M++ L+  S     DAADALAIA+ H +
Sbjct: 120 SQVQHMVRTLLKLSANPQADAADALAIAITHCH 152


>gi|145638773|ref|ZP_01794382.1| Holliday junction resolvase [Haemophilus influenzae PittII]
 gi|229845015|ref|ZP_04465152.1| Holliday junction resolvase [Haemophilus influenzae 6P18H1]
 gi|145272368|gb|EDK12276.1| Holliday junction resolvase [Haemophilus influenzae PittII]
 gi|229812149|gb|EEP47841.1| Holliday junction resolvase [Haemophilus influenzae 6P18H1]
 gi|309750263|gb|ADO80247.1| Holliday junction resolvasome, endodeoxyribonuclease subunit
           [Haemophilus influenzae R2866]
          Length = 190

 Score =  106 bits (264), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 65/150 (43%), Positives = 98/150 (65%), Gaps = 1/150 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G +L ++ SG I + V + L  RL ++Y G+T++I  ++P 
Sbjct: 4   ILGIDPGSRVTGYGVIRQTGRHLEYLGSGAIRTQV-EDLPTRLKRIYAGVTEIITQFQPS 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR  AI++     +PV EYA   +K+ V+G+G  DK Q+
Sbjct: 63  MFAIEQVFMAKNADSALKLGQARGTAIVAAVNHDLPVFEYAARLVKQTVVGIGSADKVQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAY 156
             M+  ++  S     DAADALAIA+ HA+
Sbjct: 123 QEMVTRILKLSDKPQADAADALAIAITHAH 152


>gi|293390519|ref|ZP_06634853.1| Holliday junction resolvase [Aggregatibacter actinomycetemcomitans
           D7S-1]
 gi|290951053|gb|EFE01172.1| Holliday junction resolvase [Aggregatibacter actinomycetemcomitans
           D7S-1]
          Length = 190

 Score =  106 bits (264), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 66/161 (40%), Positives = 102/161 (63%), Gaps = 1/161 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G +L ++ SG I + V + L  RL ++Y  +T++I  ++P+
Sbjct: 4   ILGIDPGSRVTGYGVIRQNGRHLEYLGSGAIRTQV-EDLPTRLKRIYASVTEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR  AI++     +PV EYA   IK+ V+G+G  DK Q+
Sbjct: 63  MFAIEQVFMAKNADSALKLGQARGTAIVAAVNHNLPVFEYAARLIKQTVVGIGSADKVQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
             M+  ++  S     DAADALAIA+ HA+     ++  +S
Sbjct: 123 QEMVTRILKLSDKPQADAADALAIAITHAHSIQHSFHVASS 163


>gi|229846402|ref|ZP_04466510.1| Holliday junction resolvase [Haemophilus influenzae 7P49H1]
 gi|229810495|gb|EEP46213.1| Holliday junction resolvase [Haemophilus influenzae 7P49H1]
          Length = 190

 Score =  106 bits (264), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 65/150 (43%), Positives = 99/150 (66%), Gaps = 1/150 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G +L ++ SG I + V + L  RL ++Y G+T++I  ++P+
Sbjct: 4   ILGIDPGSRITGYGVIRQTGRHLEYLGSGAIRTQV-EDLPTRLKRIYAGVTEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR  AI++     +PV EYA   +K+ V+G+G  DK Q+
Sbjct: 63  MFAIEQVFMAKNADSALKLGQARGTAIVAAVNHDLPVFEYAARLVKQTVVGIGSADKVQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAY 156
             M+  ++  S     DAADALAIA+ HA+
Sbjct: 123 QEMVTRILKLSDKPQTDAADALAIAITHAH 152


>gi|315634724|ref|ZP_07890008.1| crossover junction endodeoxyribonuclease RuvC [Aggregatibacter
           segnis ATCC 33393]
 gi|315476672|gb|EFU67420.1| crossover junction endodeoxyribonuclease RuvC [Aggregatibacter
           segnis ATCC 33393]
          Length = 190

 Score =  106 bits (264), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 66/157 (42%), Positives = 99/157 (63%), Gaps = 1/157 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I + V   L  RL ++Y G+T++I  ++P+
Sbjct: 4   ILGIDPGSRVTGYGVIRQTGRQLEYLGSGAIRTQV-DDLPTRLKRIYAGVTEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR  AI++     +PV EYA   IK+ V+G+G  DK Q+
Sbjct: 63  MFAIEQVFMAKNADSALKLGQARGTAIVAAVNHDLPVFEYAARLIKQTVVGIGSADKIQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYY 163
             M+  ++  S     DAADALAIA+ HA+     ++
Sbjct: 123 QDMVTRILKLSDKPQADAADALAIAITHAHSIQHSFH 159


>gi|114776335|ref|ZP_01451380.1| Crossover junction endodeoxyribonuclease RuvC [Mariprofundus
           ferrooxydans PV-1]
 gi|114553165|gb|EAU55563.1| Crossover junction endodeoxyribonuclease RuvC [Mariprofundus
           ferrooxydans PV-1]
          Length = 163

 Score =  106 bits (264), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 65/154 (42%), Positives = 98/154 (63%), Gaps = 1/154 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+G+DPG  +TG GI+DV G+ +  V   +++ C       RL  L+ GL  VI  + 
Sbjct: 1   MRILGVDPGSLKTGVGIIDVQGNRIRHVHH-SVIRCGAGDFDDRLHILFSGLKLVIAEFH 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P  AA+E VFV+K+  + LKLGQAR   I +   + + VS Y+P  +K+AV+G G  DK+
Sbjct: 60  PTLAAIEDVFVSKNVNSALKLGQARGALIAACTDSGLRVSPYSPTKVKQAVVGFGRADKE 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHA 158
           Q+  M+++L+       +DAADALA+A+CHA+HA
Sbjct: 120 QVQHMIRILLHPPEPLAEDAADALAVAICHAHHA 153


>gi|62263337|gb|AAX78153.1| unknown protein [synthetic construct]
          Length = 213

 Score =  106 bits (264), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 67/163 (41%), Positives = 106/163 (65%), Gaps = 8/163 (4%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQS---LAFRLCQLYEGLTDVIKNW 63
           I+GIDPG R TG+G++ V  + + +V+SG    C+R +      RL Q+ +G+T +I  +
Sbjct: 36  ILGIDPGSRITGFGVIKVQDNKIYYVASG----CIRITEITTPKRLKQIADGITQIINIY 91

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P EAA+EQ+F+ ++ +  +KLGQAR +A+ + A+  + VSEY+   IK+AV+G G   K
Sbjct: 92  APTEAAIEQIFMFQNPMGAIKLGQARGVAMCTLAINNLEVSEYSAKQIKQAVVGTGGAAK 151

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
            Q+  M++ L+  S    +DAADALAIA+CH YH++    KI+
Sbjct: 152 SQVQHMVQSLLGLSKKPPEDAADALAIAICH-YHSSKSLAKIS 193


>gi|301169023|emb|CBW28620.1| component of RuvABC resolvasome, endonuclease [Haemophilus
           influenzae 10810]
          Length = 190

 Score =  106 bits (264), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 65/150 (43%), Positives = 97/150 (64%), Gaps = 1/150 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R  G+G++   G +L ++ SG I + V + L  RL ++Y G+T++I  ++P 
Sbjct: 4   ILGIDPGSRVAGYGVIRQTGRHLEYLGSGAIRTQV-EDLPTRLKRIYAGVTEIITQFQPN 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR  AI++     +PV EYA   +K+ V+G+G  DK Q+
Sbjct: 63  MFAIEQVFMAKNADSALKLGQARGTAIVAAVNHDLPVFEYAARLVKQTVVGIGSADKVQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAY 156
             M+  ++  S     DAADALAIA+ HAY
Sbjct: 123 QEMVTRILKLSDKPQADAADALAIAITHAY 152


>gi|170718043|ref|YP_001785082.1| Holliday junction resolvase [Haemophilus somnus 2336]
 gi|168826172|gb|ACA31543.1| crossover junction endodeoxyribonuclease RuvC [Haemophilus somnus
           2336]
          Length = 199

 Score =  105 bits (263), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 69/154 (44%), Positives = 97/154 (62%), Gaps = 2/154 (1%)

Query: 2   RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           R SI I+GIDPG R TG+G+V   G  L ++ SG I + +   L  RL ++Y G+T++I 
Sbjct: 10  RMSI-ILGIDPGSRVTGYGVVRQVGHKLEYLGSGVIRTSI-DDLPTRLKRIYAGITEIIT 67

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
            + P E A+EQVF+ K+  + LKLGQAR  AI++     +PV EY+  TIK+ V+G G  
Sbjct: 68  QFNPNEFAIEQVFMAKNPDSALKLGQARGTAIVAAVNQNLPVFEYSARTIKQTVVGTGAA 127

Query: 122 DKKQIHMMLKMLMPESFFKGKDAADALAIAVCHA 155
           +K Q+  M+  L+  S     DAADALAIA+ HA
Sbjct: 128 EKSQVQEMVVRLLQLSDKPQVDAADALAIAITHA 161


>gi|307718818|ref|YP_003874350.1| crossover junction endodeoxyribonuclease ruvC [Spirochaeta
           thermophila DSM 6192]
 gi|306532543|gb|ADN02077.1| crossover junction endodeoxyribonuclease ruvC [Spirochaeta
           thermophila DSM 6192]
          Length = 169

 Score =  105 bits (263), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 92/158 (58%), Gaps = 1/158 (0%)

Query: 6   RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           R +GIDPGL  TG+G+++  G    ++ +GTI +    + + RL +++  + +++  + P
Sbjct: 3   RYLGIDPGLATTGYGVIETDGRGHKYIVAGTIRTSSSHTQSARLLKIFRHVQELLLKYAP 62

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
           E   +E++F  ++  +   + QA  +  L+ A+  IPV  YAP  +K+A++G G  DK +
Sbjct: 63  EAIIMEELFFARNTTSAFYVAQAMGVVSLAAAMEDIPVYTYAPQMVKQAIVGHGRADKAE 122

Query: 126 IHMMLKMLMPESFFKGKD-AADALAIAVCHAYHANSGY 162
           I   L++L+     K  D A+DALAIA+CH +   + +
Sbjct: 123 IQRFLRLLLDLPDTKMSDHASDALAIALCHVHQHGTPF 160


>gi|261868503|ref|YP_003256425.1| Holliday junction resolvase [Aggregatibacter actinomycetemcomitans
           D11S-1]
 gi|261413835|gb|ACX83206.1| Holliday junction resolvase [Aggregatibacter actinomycetemcomitans
           D11S-1]
          Length = 190

 Score =  105 bits (263), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 66/161 (40%), Positives = 102/161 (63%), Gaps = 1/161 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G +L ++ SG I + V + L  RL ++Y  +T++I  ++P+
Sbjct: 4   ILGIDPGSRVTGYGVIRQNGRHLEYLGSGAIRTQV-EDLPTRLKRIYASVTEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR  AI++     +PV EYA   IK+ V+G+G  DK Q+
Sbjct: 63  MFAIEQVFMAKNADSALKLGQARGTAIVAAVNHNLPVFEYAARLIKQTVVGIGSADKVQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
             M+  ++  S     DAADALAIA+ HA+     ++  +S
Sbjct: 123 QEMVTRILKLSDKPQADAADALAIAITHAHSIQHSFHVASS 163


>gi|312793293|ref|YP_004026216.1| crossover junction endodeoxyribonuclease ruvc [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312180433|gb|ADQ40603.1| crossover junction endodeoxyribonuclease RuvC [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 164

 Score =  105 bits (263), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 56/161 (34%), Positives = 91/161 (56%), Gaps = 4/161 (2%)

Query: 7   IIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           ++GIDPG+  TG+GIV+   G     +  G I +      + R   LY  L  +I  ++P
Sbjct: 1   MLGIDPGIALTGYGIVESKNGSEFKVIDYGRIETSSSLKKSMRFLHLYTELCSIISLYQP 60

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
           +  A+E++F NK++   + +G+AR + IL+     + + EY P  +K+++ G G  DK Q
Sbjct: 61  DVVAIEELFFNKNSKTAITIGEARGVIILTCIQNNLSIYEYTPLQVKQSITGYGRADKTQ 120

Query: 126 IHMMLKML--MPESFFKGKDAADALAIAVCHAYHANSGYYK 164
           I  M+K L  +PE   K  D ADALA+A+CH   ++S  Y+
Sbjct: 121 IQKMVKSLLSLPE-IPKPDDVADALAVAMCHILSSSSVLYQ 160


>gi|313677321|ref|YP_004055317.1| crossover junction endodeoxyribonuclease ruvc [Marivirga tractuosa
           DSM 4126]
 gi|312944019|gb|ADR23209.1| crossover junction endodeoxyribonuclease RuvC [Marivirga tractuosa
           DSM 4126]
          Length = 182

 Score =  105 bits (263), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 53/159 (33%), Positives = 94/159 (59%), Gaps = 1/159 (0%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M K   I+G+DPG    G+G++ + G+ +  +  G I      +   +L ++++ +T +I
Sbjct: 1   MPKDKIILGLDPGTSVMGYGVIQITGNKMSMLQYGVIHLSKYANHEIKLRKIFDRVTSLI 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
           +++ P+E A+E  F  K+  + LKLG+A+ +A+ +     +P+SEYAP  +K++V G G+
Sbjct: 61  EDYAPDEVALEAPFYGKNIQSMLKLGRAQGVAMAAALRLDLPISEYAPKKVKQSVTGNGN 120

Query: 121 GDKKQIHMMLKMLMP-ESFFKGKDAADALAIAVCHAYHA 158
             K+Q+  MLK L+  +   K  DA DAL +AVCH +  
Sbjct: 121 ASKEQVAEMLKTLLGIKEIPKLLDATDALGVAVCHHFQG 159


>gi|332184197|gb|AEE26451.1| Crossover junction endodeoxyribonuclease RuvC [Francisella cf.
           novicida 3523]
          Length = 171

 Score =  105 bits (263), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 66/163 (40%), Positives = 106/163 (65%), Gaps = 8/163 (4%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQS---LAFRLCQLYEGLTDVIKNW 63
           I+GIDPG R TG+G++ V  + + +V+SG    C+R +      RL Q+ +G+T +I  +
Sbjct: 3   ILGIDPGSRITGFGVIKVQDNKIYYVASG----CIRITEITTPRRLKQIADGITQIINIY 58

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P EAA+EQ+F+ ++ +  +KLGQAR +A+ + A+  + VSEY+   IK+AV+G G   K
Sbjct: 59  APTEAAIEQIFMFQNPMGAIKLGQARGVAMCTLAINNLEVSEYSAKQIKQAVVGTGGAAK 118

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
            Q+  M++ L+  S    +DAADALAIA+CH YH++    +I+
Sbjct: 119 SQVQHMVQSLLGLSKKPPEDAADALAIAICH-YHSSKSLARIS 160


>gi|320528951|ref|ZP_08030043.1| crossover junction endodeoxyribonuclease RuvC [Selenomonas
           artemidis F0399]
 gi|320138581|gb|EFW30471.1| crossover junction endodeoxyribonuclease RuvC [Selenomonas
           artemidis F0399]
          Length = 164

 Score =  105 bits (263), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 58/156 (37%), Positives = 91/156 (58%), Gaps = 3/156 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           ++GIDPG    G+G V+  G  L   + G I +  +     RL ++Y  L ++I+  RP 
Sbjct: 3   VLGIDPGTAICGYGFVEQIGSRLVPHAYGAITTPSKMQPERRLLKIYTELENLIQEHRPS 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ- 125
              +EQ+F N++    + +GQAR IA+L+ A   IP+ E+ P  +K+AV G G   K+Q 
Sbjct: 63  AIGIEQLFFNRNVTTAIPVGQARGIALLAAAKNDIPIVEHTPLQVKQAVTGYGKATKEQV 122

Query: 126 IHMMLKML-MPESFFKGKDAADALAIAVCHAYHANS 160
           I+M+ K+L +P   +   D ADALA+A+C AY  +S
Sbjct: 123 IYMVTKLLHLPHPPYP-DDTADALAVAICTAYCVDS 157


>gi|91205993|ref|YP_538348.1| Holliday junction resolvase [Rickettsia bellii RML369-C]
 gi|123266180|sp|Q1RHA5|RUVC_RICBR RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|91069537|gb|ABE05259.1| Crossover junction endodeoxyribonuclease RuvC [Rickettsia bellii
           RML369-C]
          Length = 157

 Score =  105 bits (263), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 60/148 (40%), Positives = 88/148 (59%), Gaps = 5/148 (3%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           ++GIDP L   GW +V      L +++SG I +  +  +  RL  +   L  VI  ++P 
Sbjct: 3   VLGIDPALGSLGWAVVAKESAKLKYLASGVIKTSSKDEIHHRLSYINSILEKVILEYKPN 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALAR--IPVSEYAPNTIKKAVIGVGHGDKK 124
            AA+E+ FVN ++V +LKLG AR  AI+S  + R  + + E+ PNTIKK V G GH +K 
Sbjct: 63  MAAIEETFVNTNSVTSLKLGYARG-AIMS-LIGRYDLDMREFKPNTIKKTVTGYGHAEKD 120

Query: 125 QIHMMLKMLMP-ESFFKGKDAADALAIA 151
           QI  M+K+L+P  +     D ADA+AIA
Sbjct: 121 QILHMIKLLLPGTAAITNSDEADAVAIA 148


>gi|257440217|ref|ZP_05615972.1| crossover junction endodeoxyribonuclease RuvC [Faecalibacterium
           prausnitzii A2-165]
 gi|257197251|gb|EEU95535.1| crossover junction endodeoxyribonuclease RuvC [Faecalibacterium
           prausnitzii A2-165]
          Length = 170

 Score =  105 bits (263), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 55/153 (35%), Positives = 89/153 (58%), Gaps = 3/153 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPG    GWG++D AG+    V  G + +        RL ++Y G+ +VI+  +
Sbjct: 1   MRVLGIDPGYAIVGWGVLDYAGNRFAPVDFGAVCTDAGVPFEQRLDEVYTGIREVIERTQ 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           PE  A+E++F   +    + + +AR + +L+ A A IP+ EY P  +K+AV G G   KK
Sbjct: 61  PEVLAIEKLFYQHNQTTVIGVAEARGVILLAAAQAGIPIYEYTPMQVKQAVTGYGKAVKK 120

Query: 125 QIHMMLKMLMP-ESFFKGKDAADALAIAV--CH 154
           Q+  M ++L+   +  K  D ADALA+A+  CH
Sbjct: 121 QVQEMTRILLHLPAVPKPDDTADALAMAITFCH 153


>gi|312877192|ref|ZP_07737161.1| crossover junction endodeoxyribonuclease RuvC [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311796001|gb|EFR12361.1| crossover junction endodeoxyribonuclease RuvC [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 164

 Score =  105 bits (263), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 56/161 (34%), Positives = 91/161 (56%), Gaps = 4/161 (2%)

Query: 7   IIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           ++GIDPG+  TG+GIV+   G     +  G I +      + R   LY  L  +I  ++P
Sbjct: 1   MLGIDPGIALTGYGIVESKNGSEFKVIDYGRIETLSSLKKSMRFLHLYTELCSIISLYQP 60

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
           +  A+E++F NK++   + +G+AR + IL+     + + EY P  +K+++ G G  DK Q
Sbjct: 61  DVVAIEELFFNKNSKTAITIGEARGVIILTCIQNNLSIYEYTPLQVKQSITGYGRADKTQ 120

Query: 126 IHMMLKML--MPESFFKGKDAADALAIAVCHAYHANSGYYK 164
           I  M+K L  +PE   K  D ADALA+A+CH   ++S  Y+
Sbjct: 121 IQKMVKSLLSLPE-IPKPDDVADALAVAMCHILSSSSVLYQ 160


>gi|301155727|emb|CBW15195.1| component of RuvABC resolvasome, endonuclease [Haemophilus
           parainfluenzae T3T1]
          Length = 190

 Score =  105 bits (263), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 65/150 (43%), Positives = 99/150 (66%), Gaps = 1/150 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G +L ++ SG I + V + L  RL ++Y G+T++I  ++P+
Sbjct: 4   ILGIDPGSRVTGYGVIRQNGRHLEYLGSGAIRTQV-EDLPTRLKRIYAGVTEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR  AI++     +PV EYA   +K+ V+G+G  DK Q+
Sbjct: 63  MFAIEQVFMAKNADSALKLGQARGTAIVAAVNHDLPVFEYAARLVKQTVVGIGSADKVQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAY 156
             M+  ++  S     DAADALAIA+ HA+
Sbjct: 123 QDMVTRILKLSDKPQADAADALAIAITHAH 152


>gi|322515241|ref|ZP_08068239.1| crossover junction endoribonuclease subunit C [Actinobacillus ureae
           ATCC 25976]
 gi|322118746|gb|EFX90952.1| crossover junction endoribonuclease subunit C [Actinobacillus ureae
           ATCC 25976]
          Length = 192

 Score =  105 bits (263), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 65/150 (43%), Positives = 97/150 (64%), Gaps = 1/150 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G +L ++ SG I + V   L  RL ++Y G+T++I  ++P+
Sbjct: 4   ILGIDPGSRVTGYGVIHQTGRHLEYLGSGAIRTSV-DDLPTRLKRIYAGVTEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR  AI++     +PV EYA   +K+ V G+G  DK Q+
Sbjct: 63  MFAIEQVFMAKNADSALKLGQARGTAIVAAVNHDLPVFEYAARLVKQTVTGIGSADKIQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAY 156
             M+  ++  S     DAADALAIA+ HA+
Sbjct: 123 QDMVTRMLQLSSKPQADAADALAIAITHAH 152


>gi|325914900|ref|ZP_08177233.1| Holliday junction endonuclease RuvC [Xanthomonas vesicatoria ATCC
           35937]
 gi|325538888|gb|EGD10551.1| Holliday junction endonuclease RuvC [Xanthomonas vesicatoria ATCC
           35937]
          Length = 146

 Score =  105 bits (262), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 63/147 (42%), Positives = 88/147 (59%), Gaps = 7/147 (4%)

Query: 6   RIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           RI+GIDPG +RTG GI+DV  G     V    ++       A RL +L  GL ++I+ +R
Sbjct: 3   RILGIDPGSQRTGVGIIDVDEGGRSRHVHHAPLLLLGEGDFAQRLKRLLHGLGELIETYR 62

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+E A+E+VF+ K A + LKLG AR  AI +  +  +PV EYA   IK A++G G  DK 
Sbjct: 63  PDEVAIEKVFMGKSADSALKLGHARGAAICAVVMRDLPVHEYAATEIKLALVGKGGADKV 122

Query: 125 QIHMMLKMLMPESFFKGK---DAADAL 148
           Q+  M+ +++     KGK   DAADAL
Sbjct: 123 QVQHMVGIMLN---LKGKLQADAADAL 146


>gi|259908218|ref|YP_002648574.1| Holliday junction resolvase [Erwinia pyrifoliae Ep1/96]
 gi|224963840|emb|CAX55342.1| Crossover junction endodeoxyribonuclease [Erwinia pyrifoliae
           Ep1/96]
 gi|283478148|emb|CAY74064.1| Holliday junction nuclease [Erwinia pyrifoliae DSM 12163]
 gi|310767867|gb|ADP12817.1| Holliday junction resolvase [Erwinia sp. Ejp617]
          Length = 173

 Score =  105 bits (262), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 65/157 (41%), Positives = 98/157 (62%), Gaps = 7/157 (4%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQS---LAFRLCQLYEGLTDVIKNW 63
           I+GIDPG R TG+G++   G  L ++ SG    C+R S   L  RL  +Y G++++I  +
Sbjct: 4   ILGIDPGSRVTGYGVIRQTGRQLSYLGSG----CIRTSVTDLPSRLKLIYAGVSEIITQF 59

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RPE  A+EQVF+ K+A + LKLGQAR  AI++     +PV EYA   +K+ V+G+G  +K
Sbjct: 60  RPEYFAIEQVFMAKNADSALKLGQARGAAIVAAVNQDLPVFEYAARQVKQTVVGIGSAEK 119

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
            Q+  M++ L+        DAADALAIA+ H + + +
Sbjct: 120 SQVQHMVRTLLKLPANPQADAADALAIAITHCHMSQN 156


>gi|145631438|ref|ZP_01787208.1| Holliday junction resolvase [Haemophilus influenzae R3021]
 gi|144982975|gb|EDJ90484.1| Holliday junction resolvase [Haemophilus influenzae R3021]
          Length = 190

 Score =  105 bits (262), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 64/150 (42%), Positives = 98/150 (65%), Gaps = 1/150 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G +L ++ SG I + V + L  RL ++Y G+ ++I  ++P+
Sbjct: 4   ILGIDPGSRVTGYGVIRQTGRHLEYLGSGAIRTQV-EDLPTRLKRIYAGVAEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR  AI++     +PV EYA   +K+ V+G+G  DK Q+
Sbjct: 63  MFAIEQVFMAKNADSALKLGQARGTAIVAAVNHNLPVFEYAARLVKQTVVGIGSADKVQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAY 156
             M+  ++  S     DAADALAIA+ HA+
Sbjct: 123 QEMITRILKLSDKPQADAADALAIAITHAH 152


>gi|325579044|ref|ZP_08149000.1| crossover junction endodeoxyribonuclease RuvC [Haemophilus
           parainfluenzae ATCC 33392]
 gi|325159279|gb|EGC71413.1| crossover junction endodeoxyribonuclease RuvC [Haemophilus
           parainfluenzae ATCC 33392]
          Length = 190

 Score =  105 bits (262), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 66/161 (40%), Positives = 102/161 (63%), Gaps = 1/161 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G +L ++ SG I + V + L  RL ++Y G+T++I  ++P+
Sbjct: 4   ILGIDPGSRVTGYGVIRQNGRHLEYLGSGAIRTQV-EDLPTRLKRIYAGVTEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR  AI++     +PV EYA   +K+ V+G+G  DK Q+
Sbjct: 63  MFAIEQVFMAKNADSALKLGQARGTAIVAAVNHDLPVFEYAARLVKQTVVGIGSADKVQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
             M+  ++  S     DAADALAIA+ HA+      + + S
Sbjct: 123 QDMVTRILKLSDKPQADAADALAIAITHAHTIQHSLHIVGS 163


>gi|227484941|ref|ZP_03915257.1| crossover junction endodeoxyribonuclease [Anaerococcus lactolyticus
           ATCC 51172]
 gi|227237096|gb|EEI87111.1| crossover junction endodeoxyribonuclease [Anaerococcus lactolyticus
           ATCC 51172]
          Length = 164

 Score =  105 bits (262), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 48/149 (32%), Positives = 88/149 (59%), Gaps = 1/149 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           ++GIDPG+   G+G+V+   + +  + +G + +  +     RL  LY+ L  +IK ++P+
Sbjct: 3   VLGIDPGIAIMGYGVVEFKSNKVKVLENGVVTTSSKTRTPERLKILYDNLDKIIKEFKPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E++F N++    + +G AR + +L      + + EY P  IK+A+ G G  DK+Q+
Sbjct: 63  EFAIEELFFNQNVKTAITVGHARGVQVLCAQDNGLDIYEYTPLQIKQAITGYGRADKQQM 122

Query: 127 HMMLKMLMP-ESFFKGKDAADALAIAVCH 154
            + +  L+  +   K  DAADAL++A+CH
Sbjct: 123 QLTITTLLNLKEIPKPDDAADALSVALCH 151


>gi|167770541|ref|ZP_02442594.1| hypothetical protein ANACOL_01887 [Anaerotruncus colihominis DSM
           17241]
 gi|167667136|gb|EDS11266.1| hypothetical protein ANACOL_01887 [Anaerotruncus colihominis DSM
           17241]
          Length = 163

 Score =  105 bits (262), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 52/155 (33%), Positives = 89/155 (57%), Gaps = 1/155 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG    G+G+V+        V  G I +  +   + RL  +Y+ +T ++   +P+
Sbjct: 3   ILGIDPGYATVGYGVVNYDRGRFAPVRFGAITTPPKTDFSARLEMIYDDMTVLLDKSQPQ 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             ++EQ+F + +    + + QAR + +LS     +PV EY P  +K++V+G G  +KKQ+
Sbjct: 63  ALSIEQLFFSNNKTTAIDVAQARGVILLSARKHGVPVFEYTPMQVKQSVVGYGLAEKKQV 122

Query: 127 HMMLKMLMP-ESFFKGKDAADALAIAVCHAYHANS 160
             M +ML+  E+  +  D ADALA+A+CH + A S
Sbjct: 123 MEMTRMLLGLEAVPRPDDTADALALAICHGHSAGS 157


>gi|254495252|ref|ZP_05108176.1| crossover junction endodeoxyribonuclease RuvC [Polaribacter sp.
           MED152]
 gi|85819605|gb|EAQ40762.1| crossover junction endodeoxyribonuclease RuvC [Polaribacter sp.
           MED152]
          Length = 184

 Score =  105 bits (262), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 55/156 (35%), Positives = 89/156 (57%), Gaps = 3/156 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG    G+G++ + G  + F+    ++         +L  ++E   ++I  + P+
Sbjct: 7   ILGIDPGTTIMGFGLIKIVGKKMEFIQMNELILKKYDDHYLKLKLIFERTVELIDTYHPD 66

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E  F  K+  + LKLG+A+ +A+ +     IP++EY P  IK A+ G G+  K+Q+
Sbjct: 67  EIAIEAPFFGKNVQSMLKLGRAQGVAMAAGLSREIPITEYLPKKIKMAITGNGNASKEQV 126

Query: 127 HMMLKMLMP-ESFFKGKDAADALAIAVCHAYHANSG 161
            +MLK L+  ++  K  DA D LA AVCH Y  NSG
Sbjct: 127 ALMLKSLLNLKTLPKNLDATDGLAAAVCHYY--NSG 160


>gi|78485237|ref|YP_391162.1| crossover junction endodeoxyribonuclease RuvC [Thiomicrospira
           crunogena XCL-2]
 gi|123555644|sp|Q31H85|RUVC_THICR RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|78363523|gb|ABB41488.1| crossover junction endodeoxyribonuclease RuvC [Thiomicrospira
           crunogena XCL-2]
          Length = 172

 Score =  105 bits (262), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 60/156 (38%), Positives = 97/156 (62%), Gaps = 1/156 (0%)

Query: 6   RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           RI+GIDPG R+TG+GI++    +  +VSSG ++   + + A RL  ++E +  +I  ++P
Sbjct: 6   RILGIDPGSRKTGFGIIESGRFHPNYVSSG-VIRVEKLTGAQRLKTIFESVCQIIDQYQP 64

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
              A+E+VFV K+  + +KLGQAR + + + A+  IP+ EY P  IK  ++G GH  K Q
Sbjct: 65  HVMAIEKVFVYKNPSSAIKLGQARGVILCAAAIKEIPIMEYTPTQIKSTIVGQGHATKDQ 124

Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSG 161
           +  M++ L+  +    +DAADALA A+CH  +   G
Sbjct: 125 VQFMVQNLLKLTESPQEDAADALAGALCHDRYLTLG 160


>gi|258512079|ref|YP_003185513.1| crossover junction endodeoxyribonuclease RuvC [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257478805|gb|ACV59124.1| crossover junction endodeoxyribonuclease RuvC [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 184

 Score =  105 bits (262), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 51/133 (38%), Positives = 85/133 (63%), Gaps = 1/133 (0%)

Query: 3   KSIRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           +S+RI+G+DPGL R G+GI++   GD+L  V+ G I +     L  RL  +++ LT++ +
Sbjct: 2   ESLRILGVDPGLARLGFGIIERGPGDSLHHVAHGCIETGADTPLPERLRHIFQQLTELCR 61

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
             RP   AVE++F +++      +GQAR +A+L+ A A + V EY P  +K+AV G G  
Sbjct: 62  THRPAVMAVEELFFSRNTTTAFTVGQARGVALLAGAEAGLAVMEYTPMQVKQAVTGYGRA 121

Query: 122 DKKQIHMMLKMLM 134
           DK+Q+  M+++L+
Sbjct: 122 DKRQVQEMVRLLL 134


>gi|149927723|ref|ZP_01915975.1| Crossover junction endodeoxyribonuclease RuvC [Limnobacter sp.
           MED105]
 gi|149823549|gb|EDM82779.1| Crossover junction endodeoxyribonuclease RuvC [Limnobacter sp.
           MED105]
          Length = 182

 Score =  105 bits (262), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 54/130 (41%), Positives = 84/130 (64%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGLR TG+G+VD+      +V+SG I S    SL  RL  L+ GL ++ + ++
Sbjct: 1   MRILGIDPGLRITGYGVVDIIESQQIYVASGVIRSNSDASLPDRLHTLFTGLCELAELYK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ A VE+VFVN +  +TL LGQAR   + +   + + V+EY    IK+A++G G  +K+
Sbjct: 61  PQVAVVEKVFVNVNPQSTLLLGQARGAVLTALTHSGLAVTEYTALQIKQAIVGHGKANKE 120

Query: 125 QIHMMLKMLM 134
           Q+  M+K L+
Sbjct: 121 QVQEMVKRLL 130


>gi|120554626|ref|YP_958977.1| crossover junction endodeoxyribonuclease RuvC [Marinobacter
           aquaeolei VT8]
 gi|166233202|sp|A1U1C1|RUVC_MARAV RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|120324475|gb|ABM18790.1| Holliday junction endonuclease RuvC [Marinobacter aquaeolei VT8]
          Length = 175

 Score =  105 bits (262), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 69/163 (42%), Positives = 102/163 (62%), Gaps = 8/163 (4%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVR---QSLAFRLCQLYEGLTDVIKNW 63
           I+G+DPG R TG+G++   G  L ++ SG    C+R   + +A RL  ++  L  +I  +
Sbjct: 4   ILGVDPGSRITGYGLIRSEGRLLEYLDSG----CIRVGEKPMAERLQTIFHSLAVLIGEY 59

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RPEE A+EQVF+ ++  + LKLGQAR  AI+S A + + V EY+   +K+AV+G G  DK
Sbjct: 60  RPEEFAIEQVFMARNPDSALKLGQARGAAIVSAANSGLAVHEYSARQVKQAVVGTGGADK 119

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
            Q+  M++ L+  S     DAADALAIA+CHA H N    ++A
Sbjct: 120 SQVQHMVQALLGLSRKPQADAADALAIALCHA-HMNQSVLRMA 161


>gi|322382933|ref|ZP_08056765.1| hypothetical protein PL1_0639 [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321153053|gb|EFX45511.1| hypothetical protein PL1_0639 [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 155

 Score =  105 bits (262), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 51/144 (35%), Positives = 84/144 (58%), Gaps = 2/144 (1%)

Query: 18  GWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNK 77
           G+G +D     L  V  G+I +        RL Q+YE   +++  ++P+  A E++F N+
Sbjct: 2   GFGFIDKVSSRLVPVQYGSIQTEAYTDPGLRLKQVYEATGELLDKYKPDAVAFEKLFFNR 61

Query: 78  DAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPES 137
           +      +GQAR + IL+     +P++EY P  +K+AV+G G  +KKQ+  M++M +  S
Sbjct: 62  NVTTAFSVGQARGVMILASVQRGLPIAEYTPLQVKQAVVGYGKAEKKQVQEMVRMFLKLS 121

Query: 138 FF-KGKDAADALAIAVCHAYHANS 160
              K  D ADALA+A+CHA H++S
Sbjct: 122 AVPKPDDVADALAVAICHA-HSSS 144


>gi|315126270|ref|YP_004068273.1| Holliday junction nuclease [Pseudoalteromonas sp. SM9913]
 gi|315014784|gb|ADT68122.1| Holliday junction nuclease [Pseudoalteromonas sp. SM9913]
          Length = 174

 Score =  105 bits (261), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 67/160 (41%), Positives = 97/160 (60%), Gaps = 2/160 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G+V   G    ++ SG I          RL  +Y+G+T +I+ + PE
Sbjct: 4   ILGIDPGSRLTGYGVVAHQGAKFTYLGSGCI-KLADHDFPTRLKMIYQGITQLIEQFSPE 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+E+VF+  +  + LKLGQAR  AI+  ++A +PV EY+   IK+AV+G G  DK Q+
Sbjct: 63  TFAIEKVFMAHNPDSALKLGQARGAAIVGASMADLPVFEYSARQIKQAVVGNGGADKSQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
             M+K ++        DAADALAIA+CHA H+     K+A
Sbjct: 123 QHMVKNILKLPGTPQADAADALAIAICHA-HSEQNLIKLA 161


>gi|303250097|ref|ZP_07336299.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307246068|ref|ZP_07528150.1| Crossover junction endodeoxyribonuclease ruvC [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307250409|ref|ZP_07532356.1| Crossover junction endodeoxyribonuclease ruvC [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|307252791|ref|ZP_07534682.1| Crossover junction endodeoxyribonuclease ruvC [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307255050|ref|ZP_07536868.1| Crossover junction endodeoxyribonuclease ruvC [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307259486|ref|ZP_07541211.1| Crossover junction endodeoxyribonuclease ruvC [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|302651160|gb|EFL81314.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306853003|gb|EFM85226.1| Crossover junction endodeoxyribonuclease ruvC [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306857538|gb|EFM89647.1| Crossover junction endodeoxyribonuclease ruvC [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306859823|gb|EFM91845.1| Crossover junction endodeoxyribonuclease ruvC [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306861923|gb|EFM93899.1| Crossover junction endodeoxyribonuclease ruvC [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306866422|gb|EFM98285.1| Crossover junction endodeoxyribonuclease ruvC [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
          Length = 192

 Score =  105 bits (261), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 65/150 (43%), Positives = 97/150 (64%), Gaps = 1/150 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G +L ++ SG I + V   L  RL ++Y G+T++I  ++P+
Sbjct: 4   ILGIDPGSRVTGYGVIRQTGRHLEYLGSGAIRTSV-DDLPTRLKRIYAGVTEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR  AI++     +PV EYA   +K+ V G+G  DK Q+
Sbjct: 63  MFAIEQVFMAKNADSALKLGQARGTAIVAAVNHDLPVFEYAARLVKQTVTGIGSADKIQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAY 156
             M+  ++  S     DAADALAIA+ HA+
Sbjct: 123 QDMVTRMLQLSSKPQADAADALAIAITHAH 152


>gi|42523919|ref|NP_969299.1| crossover junction endodeoxyribonuclease RuvC [Bdellovibrio
           bacteriovorus HD100]
 gi|81616889|sp|Q6MKB6|RUVC_BDEBA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|39576126|emb|CAE80292.1| crossover junction endodeoxyribonuclease RuvC [Bdellovibrio
           bacteriovorus HD100]
          Length = 168

 Score =  105 bits (261), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 52/154 (33%), Positives = 88/154 (57%)

Query: 4   SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           S+ I+G+DPG R TG+G+V VA   +  ++ G IV     +   R+ +L     +V++ +
Sbjct: 2   SLVILGVDPGSRITGFGVVRVANGKIEHINHGVIVMDGDDAFPRRMTELGSAFREVMEKY 61

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +PE+  +E++F+ K+A +  KLG AR + +    L    V EYA  ++KK V G G   K
Sbjct: 62  KPEQVVIEKIFLGKNADSAFKLGHARGVIMYEAGLGGAEVQEYATRSVKKGVTGNGGASK 121

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYH 157
           + +  +LK+++        DA+DALA+A  HA+ 
Sbjct: 122 EDVQAILKVMLSLKTISRIDASDALAMACYHAFE 155


>gi|54294186|ref|YP_126601.1| crossover junction endodeoxyribonuclease ruvC [Legionella
           pneumophila str. Lens]
 gi|81601404|sp|Q5WX48|RUVC_LEGPL RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|53754018|emb|CAH15489.1| Crossover junction endodeoxyribonuclease ruvC [Legionella
           pneumophila str. Lens]
          Length = 174

 Score =  105 bits (261), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 57/153 (37%), Positives = 100/153 (65%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++  +   + ++ SG I +     L+ +L Q+Y+G+ +++ ++ P 
Sbjct: 4   ILGIDPGSRVTGYGLIKESDRKIAYIDSGCIRTSNDVELSHKLLQIYDGICELMDHYSPT 63

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+EQ+F++ +  + LKLG AR +A+++ A  R+ + EY+   IK++V+G G  +K Q+
Sbjct: 64  EVAIEQIFMHNNPNSALKLGHARGVAMVAAASHRVKICEYSAREIKQSVVGYGAAEKDQV 123

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHAN 159
             M+  L+  +    KDAADALAIA+CH++  N
Sbjct: 124 SHMVVELLQLNRAPQKDAADALAIAICHSHMRN 156


>gi|29839887|ref|NP_828993.1| Holliday junction resolvase [Chlamydophila caviae GPIC]
 gi|33301630|sp|Q824M6|RUVC_CHLCV RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|29834234|gb|AAP04871.1| crossover junction endodeoxyribonuclease RuvC [Chlamydophila caviae
           GPIC]
          Length = 168

 Score =  105 bits (261), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 58/154 (37%), Positives = 93/154 (60%), Gaps = 4/154 (2%)

Query: 7   IIGIDPGLRRTGWGIVDVAGD-NLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           I+GIDPG   +G+ I+ +     +   S G I    + SL  R  QL++ L+ V+ +  P
Sbjct: 5   IMGIDPGTLVSGYAIIHIEQRYKIRAHSYGAIRLSSKDSLTQRYKQLFQTLSGVLDDITP 64

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
           +   +E  +V+K+  +T+KLG AR + IL+ AL  IPV EYAPN  K+AV+G G+  K+Q
Sbjct: 65  DAVVLETQYVHKNPQSTIKLGMARGVLILAAALRDIPVFEYAPNVAKRAVVGKGNASKQQ 124

Query: 126 IHMMLKMLM--PESFFKG-KDAADALAIAVCHAY 156
           + +M+  ++  P+      +D ADA A+A+CHA+
Sbjct: 125 VQLMVSKILNIPDVLNSNCEDIADAFALAICHAH 158


>gi|209767454|gb|ACI82039.1| Holliday junction nuclease [Escherichia coli]
          Length = 173

 Score =  105 bits (261), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 52/128 (40%), Positives = 83/128 (64%), Gaps = 1/128 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG   TG+G++   G  L ++ SG I + V   L  RL  +Y G+T++I  ++P+
Sbjct: 4   ILGIDPGSCVTGYGVIRQVGRQLSYLGSGCIRTKV-DDLPSRLKLIYAGVTEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR +AI++     +PV EYA   +K+ V+G+G  +K Q+
Sbjct: 63  YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 122

Query: 127 HMMLKMLM 134
             M++ L+
Sbjct: 123 QHMVRTLL 130


>gi|160942949|ref|ZP_02090188.1| hypothetical protein FAEPRAM212_00426 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445850|gb|EDP22853.1| hypothetical protein FAEPRAM212_00426 [Faecalibacterium prausnitzii
           M21/2]
          Length = 170

 Score =  105 bits (261), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 54/153 (35%), Positives = 89/153 (58%), Gaps = 3/153 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPG    GWG+V+ AG+    V  G + +        RL ++Y G+ +VI+  +
Sbjct: 1   MRVLGIDPGYAIVGWGVVEYAGNRFAPVDFGAVCTDAGVPFERRLDEVYTGIKEVIERTK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           PE  A+E++F   +    + + +AR + +L+ A A +P+ EY P  +K+AV G G   KK
Sbjct: 61  PEVLAIEKLFYQHNQTTVIGVAEARGVILLAAAQAGLPIYEYTPMQVKQAVTGYGKAVKK 120

Query: 125 QIHMMLKMLMP-ESFFKGKDAADALAIAV--CH 154
           Q+  M ++L+   +  K  D ADALA+A+  CH
Sbjct: 121 QVQEMTRVLLHLPAVPKPDDTADALAMAITFCH 153


>gi|192362195|ref|YP_001981525.1| Holliday junction resolvase [Cellvibrio japonicus Ueda107]
 gi|190688360|gb|ACE86038.1| crossover junction endodeoxyribonuclease RuvC [Cellvibrio japonicus
           Ueda107]
          Length = 196

 Score =  105 bits (261), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 67/149 (44%), Positives = 99/149 (66%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R+TG+GI+++ G    +V+SG I       L  RL  +++ LT +I+ + P+
Sbjct: 27  ILGIDPGSRKTGFGIINLLGGKSEYVTSGVIRMRDDDELPVRLKVIFDSLTQIIERYTPQ 86

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+EQVF+ K+A + LKLGQAR  AI++ A   +PVSEY    +K++V+G G  DK Q+
Sbjct: 87  EMAIEQVFMAKNAASALKLGQARGAAIVAAAAQNLPVSEYEARKVKQSVVGNGAADKLQV 146

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHA 155
             M+K L+       +DAADALA+A+CHA
Sbjct: 147 QHMVKTLLRLPAAPQEDAADALAVALCHA 175


>gi|312134957|ref|YP_004002295.1| crossover junction endodeoxyribonuclease ruvc [Caldicellulosiruptor
           owensensis OL]
 gi|311775008|gb|ADQ04495.1| crossover junction endodeoxyribonuclease RuvC [Caldicellulosiruptor
           owensensis OL]
          Length = 164

 Score =  105 bits (261), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 59/163 (36%), Positives = 96/163 (58%), Gaps = 8/163 (4%)

Query: 7   IIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVS--CVRQSLAFRLCQLYEGLTDVIKNW 63
           ++GIDPG+  TG+GI++   G     +  G I +  C+++S+  R   L+  L  +I  +
Sbjct: 1   MLGIDPGIALTGYGIIESKNGSEFKVIDYGKIETSNCLKKSM--RFLHLHTELCSIISLY 58

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +P+  A+E++F NK++   + +G+AR + IL+     + V EY P  IK+++ G G  DK
Sbjct: 59  QPDVVAIEELFFNKNSKTAITIGEARGVIILTCIQNSLSVYEYTPLQIKQSITGYGRADK 118

Query: 124 KQIHMMLKML--MPESFFKGKDAADALAIAVCHAYHANSGYYK 164
            QI  M+K L  +PE   K  D ADALA+AVCH   ++S  Y+
Sbjct: 119 VQIQKMVKSLLGLPE-IPKPDDVADALAVAVCHILSSSSVLYQ 160


>gi|292488539|ref|YP_003531423.1| Holliday junction nuclease [Erwinia amylovora CFBP1430]
 gi|292899715|ref|YP_003539084.1| crossover junction endodeoxyribonuclease [Erwinia amylovora ATCC
           49946]
 gi|291199563|emb|CBJ46680.1| crossover junction endodeoxyribonuclease [Erwinia amylovora ATCC
           49946]
 gi|291553970|emb|CBA21015.1| Holliday junction nuclease [Erwinia amylovora CFBP1430]
 gi|312172682|emb|CBX80938.1| Holliday junction nuclease [Erwinia amylovora ATCC BAA-2158]
          Length = 173

 Score =  105 bits (261), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 65/157 (41%), Positives = 98/157 (62%), Gaps = 7/157 (4%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQS---LAFRLCQLYEGLTDVIKNW 63
           I+GIDPG R TG+G++   G  L ++ SG    C+R S   L  RL  +Y G++++I  +
Sbjct: 4   ILGIDPGSRVTGYGVIRQTGRQLSYLGSG----CIRTSVTDLPSRLKLIYAGVSEIITQF 59

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RPE  A+EQVF+ K+A + LKLGQAR  AI++     +PV EYA   +K+ V+G+G  +K
Sbjct: 60  RPEYFAIEQVFMAKNADSALKLGQARGAAIVAAVNHDLPVFEYAARQVKQTVVGIGSAEK 119

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
            Q+  M++ L+        DAADALAIA+ H + + +
Sbjct: 120 SQVQHMVRTLLKLPANPQADAADALAIAITHCHMSQN 156


>gi|226329882|ref|ZP_03805400.1| hypothetical protein PROPEN_03795 [Proteus penneri ATCC 35198]
 gi|225200677|gb|EEG83031.1| hypothetical protein PROPEN_03795 [Proteus penneri ATCC 35198]
          Length = 173

 Score =  105 bits (261), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 53/128 (41%), Positives = 83/128 (64%), Gaps = 1/128 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I + V   L  RL ++Y G++++I  + P+
Sbjct: 4   ILGIDPGSRVTGYGVIRQQGRQLIYLGSGCIRTQV-PDLPNRLKRIYAGVSEIITQFSPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             AVEQVF+ K+A + LKLGQAR +AIL+     +PV EYA   +K+ V+G G  +K Q+
Sbjct: 63  VFAVEQVFMAKNADSALKLGQARGVAILAAVNNDLPVFEYAARQVKQTVVGTGAAEKSQV 122

Query: 127 HMMLKMLM 134
             M++ ++
Sbjct: 123 QHMVRSIL 130


>gi|268324526|emb|CBH38114.1| crossover junction endodeoxyribonuclease RuvC [uncultured archaeon]
          Length = 162

 Score =  105 bits (261), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 84/151 (55%), Gaps = 1/151 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R+IGIDPG  RTGWG+V++    L  +  G + +   QS A RL ++Y  L  VIK   
Sbjct: 1   MRVIGIDPGTARTGWGVVELNNGRLKPIDFGYVKTTTAQSNAERLKKIYYDLLAVIKAVT 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  A+E +F N +    L +GQAR + +L+ A++ IP  EY  + +K  + G G   K 
Sbjct: 61  PDVMAIEMIFFNTNVKTALSVGQARGVCLLAAAISDIPAYEYNTSEVKSIITGYGRATKS 120

Query: 125 QIHM-MLKMLMPESFFKGKDAADALAIAVCH 154
           ++   +++ L  E   K  D  DALAIA  H
Sbjct: 121 EVATSVMEKLKLEEMPKPDDVTDALAIAATH 151


>gi|85709535|ref|ZP_01040600.1| Holliday junction resolvasome endonuclease subunit [Erythrobacter
           sp. NAP1]
 gi|85688245|gb|EAQ28249.1| Holliday junction resolvasome endonuclease subunit [Erythrobacter
           sp. NAP1]
          Length = 157

 Score =  105 bits (261), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 52/129 (40%), Positives = 79/129 (61%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+G+DP L  TGWG++   G  L  +++G I +  +  +A RL  L  G+ +VI    PE
Sbjct: 3   ILGLDPSLTCTGWGLIRAEGSRLSHIANGQIKTNSKAPMAERLAALSCGIAEVIAAHGPE 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
            AA E+VFVN++  +TLKL QAR   + +   A + V+E+A   +KKA +G G  DK Q+
Sbjct: 63  RAACEEVFVNENPKSTLKLAQARGAVLAACGAAGLSVNEHAARLVKKATVGTGAADKSQV 122

Query: 127 HMMLKMLMP 135
             M+K+L+P
Sbjct: 123 AAMIKVLLP 131


>gi|119477228|ref|ZP_01617464.1| Holliday junction resolvase [marine gamma proteobacterium HTCC2143]
 gi|119449591|gb|EAW30829.1| Holliday junction resolvase [marine gamma proteobacterium HTCC2143]
          Length = 173

 Score =  104 bits (260), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 63/154 (40%), Positives = 98/154 (63%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R+TG+GI++V G +  +V+SG I   + Q L  R+  L   + ++I    P+
Sbjct: 4   ILGIDPGSRKTGFGIINVNGSHHDYVTSGVIRLPIEQELPERIKVLVSSIQEIIALHCPQ 63

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           + ++EQVF+  +A + LKLGQAR  AI +     + V+EY+   IK+AV+G G   K+Q+
Sbjct: 64  QVSIEQVFMASNAGSALKLGQARGAAIAACVSNDLEVAEYSARQIKQAVVGTGAAKKEQV 123

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
             M+K+L+       +DAADALA A+CHA+ + S
Sbjct: 124 QHMVKILLKLPAMPQEDAADALAAAICHAHTSAS 157


>gi|145636552|ref|ZP_01792220.1| Holliday junction resolvase [Haemophilus influenzae PittHH]
 gi|145270377|gb|EDK10312.1| Holliday junction resolvase [Haemophilus influenzae PittHH]
          Length = 190

 Score =  104 bits (260), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 64/150 (42%), Positives = 98/150 (65%), Gaps = 1/150 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G +L ++ SG I + V + L  RL ++Y G+ ++I  ++P+
Sbjct: 4   ILGIDPGSRVTGYGVIRQTGRHLEYLGSGAIRTQV-EDLPTRLKRIYAGVAEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR  AI++     +PV EYA   +K+ V+G+G  DK Q+
Sbjct: 63  MFAIEQVFMAKNADSALKLGQARGTAIVAAVNHDLPVFEYAARLVKQTVVGIGSADKVQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAY 156
             M+  ++  S     DAADALAIA+ HA+
Sbjct: 123 QEMITRILKLSDKPQADAADALAIAITHAH 152


>gi|153003860|ref|YP_001378185.1| crossover junction endodeoxyribonuclease RuvC [Anaeromyxobacter sp.
           Fw109-5]
 gi|171769467|sp|A7H905|RUVC_ANADF RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|152027433|gb|ABS25201.1| crossover junction endodeoxyribonuclease RuvC [Anaeromyxobacter sp.
           Fw109-5]
          Length = 206

 Score =  104 bits (260), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 61/147 (41%), Positives = 86/147 (58%), Gaps = 1/147 (0%)

Query: 8   IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEE 67
           +GIDPG RR G+G+V   G  L  V+SG +     + +A RL ++ +GL +VI+   P E
Sbjct: 4   LGIDPGSRRCGYGVVAREGTRLVVVASGVLAPRAERPVAERLARILDGLAEVIRRAGPAE 63

Query: 68  AAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIH 127
            ++EQVF      + L LGQAR +A+ + A A +PV EYAP+ +K A  G G   K Q+ 
Sbjct: 64  CSIEQVFSGASVRSALVLGQARGVALAAAAQAGLPVFEYAPSEVKLAFTGSGRATKDQMI 123

Query: 128 MMLKMLMPESFFKGKDAADALAIAVCH 154
               ML+  +     D ADALA+AVCH
Sbjct: 124 RTAHMLLGATPGL-SDEADALALAVCH 149


>gi|148658443|ref|YP_001278648.1| Holliday junction resolvase [Roseiflexus sp. RS-1]
 gi|187611449|sp|A5V1E5|RUVC_ROSS1 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|148570553|gb|ABQ92698.1| crossover junction endodeoxyribonuclease RuvC [Roseiflexus sp.
           RS-1]
          Length = 168

 Score =  104 bits (260), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 63/156 (40%), Positives = 92/156 (58%), Gaps = 1/156 (0%)

Query: 4   SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           + R IGIDPG  R GWG+V+     L  V  G + +    S A RL  LY  L  +I+ +
Sbjct: 3   ATRTIGIDPGTARMGWGVVEETDGVLRLVDCGVLTTSAELSQAERLLLLYNELRHLIEQY 62

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P  AA+E++F  K+    L +GQAR + +L+ A A IPV EY P  +K+A+ G G  DK
Sbjct: 63  HPAAAAIEELFFGKNVNTALTVGQARGVVLLTLAQAGIPVYEYKPLQVKQALAGYGGADK 122

Query: 124 KQIHMMLKM-LMPESFFKGKDAADALAIAVCHAYHA 158
           +Q+  M+++ L   +  +  DAADA+A+A+CH Y A
Sbjct: 123 RQMQEMVRLTLRLPAIPRPDDAADAVAVAICHTYAA 158


>gi|304413289|ref|ZP_07394762.1| endonuclease subunit of Holliday junction resolvasome [Candidatus
           Regiella insecticola LSR1]
 gi|304284132|gb|EFL92525.1| endonuclease subunit of Holliday junction resolvasome [Candidatus
           Regiella insecticola LSR1]
          Length = 176

 Score =  104 bits (260), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 53/131 (40%), Positives = 86/131 (65%), Gaps = 7/131 (5%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQS---LAFRLCQLYEGLTDVIKNW 63
           IIGIDPG R TG+G++ + G  L +++SG    C+R     L  RL  +Y G++++I  +
Sbjct: 3   IIGIDPGSRITGYGVIALKGRQLSYLASG----CIRTGGGPLPTRLKLIYAGVSEIITQF 58

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +P+  A+EQVF+ K+A + LKLGQAR +AI++     + V EYA   +K++V+G G  +K
Sbjct: 59  QPDFFAIEQVFMAKNADSALKLGQARGVAIVAAVNQHLTVFEYAARLVKQSVVGSGAAEK 118

Query: 124 KQIHMMLKMLM 134
           KQ+  M++ L+
Sbjct: 119 KQVQHMVRCLL 129


>gi|32033874|ref|ZP_00134145.1| COG0817: Holliday junction resolvasome, endonuclease subunit
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|126208623|ref|YP_001053848.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae L20]
 gi|190150481|ref|YP_001969006.1| crossover junction endodeoxyribonuclease RuvC [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|307261635|ref|ZP_07543303.1| Crossover junction endodeoxyribonuclease ruvC [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|307263825|ref|ZP_07545430.1| Crossover junction endodeoxyribonuclease ruvC [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|166231574|sp|A3N1F7|RUVC_ACTP2 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|238692344|sp|B3GY41|RUVC_ACTP7 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|126097415|gb|ABN74243.1| crossover junction endodeoxyribonuclease RuvC [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
 gi|189915612|gb|ACE61864.1| crossover junction endodeoxyribonuclease RuvC [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|306868758|gb|EFN00567.1| Crossover junction endodeoxyribonuclease ruvC [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|306870814|gb|EFN02553.1| Crossover junction endodeoxyribonuclease ruvC [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 192

 Score =  104 bits (260), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 65/150 (43%), Positives = 96/150 (64%), Gaps = 1/150 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G +L ++ SG I + V   L  RL ++Y G+T++I  + P+
Sbjct: 4   ILGIDPGSRVTGYGVIRQTGRHLEYLGSGAIRTSV-DDLPTRLKRIYAGVTEIITQFHPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR  AI++     +PV EYA   +K+ V G+G  DK Q+
Sbjct: 63  MFAIEQVFMAKNADSALKLGQARGTAIVAAVNHDLPVFEYAARLVKQTVTGIGSADKIQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAY 156
             M+  ++  S     DAADALAIA+ HA+
Sbjct: 123 QDMVTRMLQLSSKPQADAADALAIAITHAH 152


>gi|307257207|ref|ZP_07538979.1| Crossover junction endodeoxyribonuclease ruvC [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306864369|gb|EFM96280.1| Crossover junction endodeoxyribonuclease ruvC [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
          Length = 192

 Score =  104 bits (260), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 65/150 (43%), Positives = 96/150 (64%), Gaps = 1/150 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G +L ++ SG I + V   L  RL ++Y G+T++I  + P+
Sbjct: 4   ILGIDPGSRVTGYGVIRQTGRHLEYLGSGAIRTSV-DDLPTRLKRIYAGVTEIITQFHPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR  AI++     +PV EYA   +K+ V G+G  DK Q+
Sbjct: 63  MFAIEQVFMAKNADSALKLGQARGTAIVAAVNHDLPVFEYAARLVKQTVTGIGSADKIQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAY 156
             M+  ++  S     DAADALAIA+ HA+
Sbjct: 123 QDMVTRMLQLSSKPQADAADALAIAITHAH 152


>gi|165976580|ref|YP_001652173.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|165876681|gb|ABY69729.1| crossover junction endodeoxyribonuclease [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
          Length = 200

 Score =  104 bits (260), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 65/150 (43%), Positives = 96/150 (64%), Gaps = 1/150 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G +L ++ SG I + V   L  RL ++Y G+T++I  + P+
Sbjct: 12  ILGIDPGSRVTGYGVIRQTGRHLEYLGSGAIRTSV-DDLPTRLKRIYAGVTEIITQFHPD 70

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR  AI++     +PV EYA   +K+ V G+G  DK Q+
Sbjct: 71  MFAIEQVFMAKNADSALKLGQARGTAIVAAVNHDLPVFEYAARLVKQTVTGIGSADKIQV 130

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAY 156
             M+  ++  S     DAADALAIA+ HA+
Sbjct: 131 QDMVTRMLQLSSKPQADAADALAIAITHAH 160


>gi|89898694|ref|YP_515804.1| Holliday junction resolvase [Chlamydophila felis Fe/C-56]
 gi|123722295|sp|Q252X9|RUVC_CHLFF RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|89332066|dbj|BAE81659.1| holliday junction nuclease [Chlamydophila felis Fe/C-56]
          Length = 168

 Score =  104 bits (260), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 60/160 (37%), Positives = 98/160 (61%), Gaps = 4/160 (2%)

Query: 7   IIGIDPGLRRTGWGIVDVAGD-NLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           I+GIDPG   +G+ I+ V     +   S G I    + SL  R  QL++ ++ V+ +  P
Sbjct: 5   IMGIDPGTLVSGYAIILVEQRYKIRAHSYGAIRLSSKDSLTQRYKQLFQTISGVLNDITP 64

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
           +   +E  +V+K+  +T+KLG AR + +L+ AL  IPV EYAPN  K+AV+G G+  K+Q
Sbjct: 65  DAVVLETQYVHKNPQSTIKLGMARGVLVLAAALRDIPVFEYAPNVAKRAVVGRGNASKQQ 124

Query: 126 IHMML-KML-MPESFFKG-KDAADALAIAVCHAYHANSGY 162
           + +M+ KML +P+      +D ADA A+A+CHA+ ++  +
Sbjct: 125 VQLMVSKMLNIPDVLNANCEDIADAFALAICHAHTSSYDF 164


>gi|67459565|ref|YP_247189.1| Holliday junction resolvase [Rickettsia felis URRWXCal2]
 gi|75536035|sp|Q4UKB1|RUVC_RICFE RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|67005098|gb|AAY62024.1| Crossover junction endodeoxyribonuclease RuvC [Rickettsia felis
           URRWXCal2]
          Length = 156

 Score =  104 bits (259), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 57/150 (38%), Positives = 84/150 (56%), Gaps = 2/150 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           ++GIDP L   GW +V      L +++SG I +  +  +  RL  +   L  VI  ++P 
Sbjct: 3   VLGIDPALGSLGWAVVAKDTAKLKYLASGIIKTNSKDEIHNRLAFINSTLEKVILEYQPN 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
            AA+E+ FVN ++V +LKLG AR   +       + + E+ PN +KK V G GH +K QI
Sbjct: 63  MAAIEETFVNTNSVTSLKLGYARGAIMSLIGRYNLDMREFKPNMVKKTVTGYGHAEKDQI 122

Query: 127 HMMLKMLMP-ESFFKGKDAADALAIA-VCH 154
             M+K+L+P  S     D ADA+AIA  CH
Sbjct: 123 LHMIKLLLPGTSAITNSDEADAVAIAYTCH 152


>gi|157826643|ref|YP_001495707.1| Holliday junction resolvase [Rickettsia bellii OSU 85-389]
 gi|166233293|sp|A8GUZ9|RUVC_RICB8 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|157801947|gb|ABV78670.1| Holliday junction resolvase [Rickettsia bellii OSU 85-389]
          Length = 157

 Score =  104 bits (259), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 59/148 (39%), Positives = 87/148 (58%), Gaps = 5/148 (3%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           ++GIDP L   GW +V      L +++SG I +  +  +  RL  +   L  VI  ++P 
Sbjct: 3   VLGIDPALGSLGWAVVAKESAKLKYLASGVIKTSSKDEIHHRLSYINSILEKVILEYKPN 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALAR--IPVSEYAPNTIKKAVIGVGHGDKK 124
            A +E+ FVN ++V +LKLG AR  AI+S  + R  + + E+ PNTIKK V G GH +K 
Sbjct: 63  MATIEETFVNTNSVTSLKLGYARG-AIMS-LIGRYDLDMREFKPNTIKKTVTGYGHAEKD 120

Query: 125 QIHMMLKMLMP-ESFFKGKDAADALAIA 151
           QI  M+K+L+P  +     D ADA+AIA
Sbjct: 121 QILHMIKLLLPGTAAITNSDEADAVAIA 148


>gi|228472766|ref|ZP_04057524.1| crossover junction endodeoxyribonuclease RuvC [Capnocytophaga
           gingivalis ATCC 33624]
 gi|228275817|gb|EEK14583.1| crossover junction endodeoxyribonuclease RuvC [Capnocytophaga
           gingivalis ATCC 33624]
          Length = 181

 Score =  104 bits (259), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 89/157 (56%), Gaps = 9/157 (5%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+G+DPG    G+GI+ V  + + FV    ++         +L  ++E  T++I  ++P+
Sbjct: 5   ILGVDPGTTVMGFGIIQVMKNQMKFVQMNELILSKYDDHYLKLKLIFERTTELIDTYKPD 64

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E  F  K+  + LKLG+A+ +A+ +    ++P++EY P  +K A+ G G+  K+Q+
Sbjct: 65  ELAIEAPFFGKNVQSMLKLGRAQGVAMAAGLARQVPITEYEPKKVKMAITGNGNASKEQV 124

Query: 127 HMMLKML-----MPESFFKGKDAADALAIAVCHAYHA 158
             ML+ L     +PE      DA D LA+AVCH ++ 
Sbjct: 125 AKMLQQLLHFRELPEHL----DATDGLAVAVCHFFNG 157


>gi|114566957|ref|YP_754111.1| hypothetical protein Swol_1433 [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|122318039|sp|Q0AX14|RUVC_SYNWW RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|114337892|gb|ABI68740.1| Holliday junction endonuclease RuvC [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
          Length = 172

 Score =  104 bits (259), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 54/151 (35%), Positives = 98/151 (64%), Gaps = 1/151 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++++GIDPG   TG+G++      +  ++ GTIV+  +  +  RL Q+Y  L  ++  ++
Sbjct: 1   MKVLGIDPGTATTGYGLIRSEAGRVKAITYGTIVTPAQLEMPLRLYQIYRELQALLMEYK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  AVE++F N+++   + + Q+R + +++ A A IPV+EY P  +K+AV+G G  +KK
Sbjct: 61  PDAVAVEEIFYNRNSKTVITVAQSRGVILMTAAAAGIPVAEYTPLQVKQAVVGYGAAEKK 120

Query: 125 QIHMML-KMLMPESFFKGKDAADALAIAVCH 154
           Q+ +M+ K+L  +   +  DAADALA+A+CH
Sbjct: 121 QVQLMVQKILGLQQLPRPDDAADALAVAICH 151


>gi|87118958|ref|ZP_01074856.1| crossover junction endodeoxyribonuclease RuvC [Marinomonas sp.
           MED121]
 gi|86165349|gb|EAQ66616.1| crossover junction endodeoxyribonuclease RuvC [Marinomonas sp.
           MED121]
          Length = 183

 Score =  104 bits (259), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 70/158 (44%), Positives = 105/158 (66%), Gaps = 7/158 (4%)

Query: 6   RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVR---QSLAFRLCQLYEGLTDVIKN 62
           RI+ IDPG R TG+GI+DV G  + +V SG    C+R     LA RL  +Y  +T+++  
Sbjct: 3   RILAIDPGSRITGFGIIDVQGQQIQYVDSG----CIRLPDAVLAERLKNIYTNVTELLSR 58

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
           ++P E A+E+VF+ K+A + LKLGQAR  AI++ A+A + V+EYA   +K++V+G G  D
Sbjct: 59  YQPHEFAIEEVFLAKNANSALKLGQARGAAIVAAAMAGLEVAEYAAKRVKQSVVGSGSAD 118

Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           K+Q+  M+++L+        DAADALAIA+CHA+   S
Sbjct: 119 KEQVQQMVQLLLKLEKAPQADAADALAIAMCHAHTRTS 156


>gi|188586413|ref|YP_001917958.1| Holliday junction endonuclease RuvC [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|229558766|sp|B2A5L6|RUVC_NATTJ RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|179351100|gb|ACB85370.1| Holliday junction endonuclease RuvC [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 161

 Score =  104 bits (259), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 90/150 (60%), Gaps = 1/150 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+G+DPG+   G+GI+   G  L  ++ G + +   +S   RL  +Y+G++++I  + P 
Sbjct: 3   IMGLDPGIAACGYGIIHAKGTKLECLACGVLRTYSDESATKRLESIYQGVSNLISEFSPN 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             AVE +F  K++   +K+GQA+ + +L+ A   + + EY P  +K+ V G G   K+Q+
Sbjct: 63  TVAVESLFFAKNSKTAMKVGQAKGVLMLAAAHNNLEIFEYTPLQVKQGVCGYGSASKEQV 122

Query: 127 HMMLKMLMP-ESFFKGKDAADALAIAVCHA 155
             M+K ++  +   K  DAADALA+++CH+
Sbjct: 123 QKMVKQILSLDKIPKPDDAADALAVSLCHS 152


>gi|269468515|gb|EEZ80169.1| Holliday junction resolvasome, endonuclease subunit [uncultured
           SUP05 cluster bacterium]
          Length = 156

 Score =  104 bits (259), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 92/158 (58%), Gaps = 9/158 (5%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQ--SLAFRLCQLYEGLTDVIKN 62
           ++I+G+DPG R TG+G+++       +++SG    C+R    L  R+  ++  +  ++K 
Sbjct: 1   MKILGVDPGSRVTGFGLIEAQKLKFTYIASG----CIRTKGELTDRITTIFLEIDQIVKK 56

Query: 63  WRPEEAAVEQVFVNKDAV---ATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVG 119
           ++P+   +E+ F+  D     A +KLG AR   I +  +  I + EY+PN IKKAV+G G
Sbjct: 57  YQPDVVVIERAFMRPDRPNPDAAIKLGHARGAIISAAGVNGITMVEYSPNQIKKAVVGKG 116

Query: 120 HGDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYH 157
           H  K Q+  M++  +  +    +DAADALA A+CH YH
Sbjct: 117 HATKDQVSYMVQESLKLNKAPQEDAADALAGAMCHGYH 154


>gi|303249144|ref|ZP_07335384.1| crossover junction endodeoxyribonuclease RuvC [Desulfovibrio
           fructosovorans JJ]
 gi|302489469|gb|EFL49416.1| crossover junction endodeoxyribonuclease RuvC [Desulfovibrio
           fructosovorans JJ]
          Length = 169

 Score =  104 bits (259), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 59/150 (39%), Positives = 87/150 (58%), Gaps = 4/150 (2%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           ++G+DPG R TG+G V      L  +++G + +        RL  +Y  +  +I    P 
Sbjct: 9   VLGLDPGSRVTGYGFVRERSGVLELMAAGVVRTGWDTDFCRRLGTIYTAVAKLIGQHAPV 68

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           EAAVE VFV+K+A   LKLGQAR  A+ + ++A +PV  Y P  IKK+++G G  +K Q+
Sbjct: 69  EAAVENVFVSKNAGTALKLGQARGAALAACSVAGLPVFSYEPTIIKKSLVGTGRAEKSQV 128

Query: 127 HMMLKMLMP--ESFFKGKDAADALAIAVCH 154
             M+  ++   E+F    DA DALA AVCH
Sbjct: 129 AFMVGRVLACRETF--AVDATDALAAAVCH 156


>gi|328955750|ref|YP_004373083.1| crossover junction endodeoxyribonuclease RuvC [Coriobacterium
           glomerans PW2]
 gi|328456074|gb|AEB07268.1| crossover junction endodeoxyribonuclease RuvC [Coriobacterium
           glomerans PW2]
          Length = 174

 Score =  104 bits (259), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 58/152 (38%), Positives = 93/152 (61%), Gaps = 3/152 (1%)

Query: 7   IIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           ++GIDPGL  TGWG+V+  +GD  C  + G I +     LA RL ++ + L  V++ +RP
Sbjct: 3   VLGIDPGLANTGWGVVEERSGDVRCR-AYGCIQTASGSPLAVRLRRIADDLRAVVERYRP 61

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
           + AA+E ++   +  + +    AR  A+++ +LA + V EY P  IK+AV+G G  DK Q
Sbjct: 62  QTAAIEDIYFGVNVRSAIPTAHARGAALVACSLAGMDVGEYTPMQIKQAVVGTGAADKAQ 121

Query: 126 I-HMMLKMLMPESFFKGKDAADALAIAVCHAY 156
           I +M+ ++L  +   +   AADALA A+CHA+
Sbjct: 122 IAYMVRRLLQLDREPRPDHAADALACAICHAH 153


>gi|148358829|ref|YP_001250036.1| crossover junction endodeoxyribonuclease RuvC [Legionella
           pneumophila str. Corby]
 gi|296106874|ref|YP_003618574.1| crossover junction endodeoxyribonuclease RuvC [Legionella
           pneumophila 2300/99 Alcoy]
 gi|166233201|sp|A5IBE0|RUVC_LEGPC RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|148280602|gb|ABQ54690.1| crossover junction endodeoxyribonuclease RuvC [Legionella
           pneumophila str. Corby]
 gi|295648775|gb|ADG24622.1| crossover junction endodeoxyribonuclease RuvC [Legionella
           pneumophila 2300/99 Alcoy]
          Length = 174

 Score =  104 bits (259), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 57/153 (37%), Positives = 99/153 (64%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++  +   + ++ SG I +     L+ +L Q+Y+G+ +++ ++ P 
Sbjct: 4   ILGIDPGSRVTGYGLIKESDRKIAYIDSGCIRTSNDAELSHKLLQIYDGICELMDHYSPT 63

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+EQ+F++ +  + LKLG AR +A+++ A  R  + EY+   IK++V+G G  +K Q+
Sbjct: 64  EVAIEQIFMHNNPNSALKLGHARGVAMVAAASHRAKICEYSAREIKQSVVGYGAAEKDQV 123

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHAN 159
             M+  L+  +    KDAADALAIA+CH++  N
Sbjct: 124 SHMVVELLQLNRAPQKDAADALAIAICHSHMRN 156


>gi|241767727|ref|ZP_04765346.1| crossover junction endodeoxyribonuclease RuvC [Acidovorax
           delafieldii 2AN]
 gi|241361285|gb|EER57852.1| crossover junction endodeoxyribonuclease RuvC [Acidovorax
           delafieldii 2AN]
          Length = 126

 Score =  103 bits (258), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 55/125 (44%), Positives = 80/125 (64%), Gaps = 2/125 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTI--VSCVRQSLAFRLCQLYEGLTDVIKN 62
           +RI+GIDPGL+ TG+G++DV G  L +V+SGTI   +     L  RL  L++G+++V   
Sbjct: 1   MRILGIDPGLQTTGFGLIDVDGHRLSYVASGTIRTTALALGDLPGRLKVLFDGISEVAAR 60

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
           + P+ A VE VFVN +  +TL LGQAR  AI +   + +PV+EY    +KKAV+G G   
Sbjct: 61  YEPDVATVEIVFVNVNPQSTLLLGQARGAAITALVASNLPVAEYTALQMKKAVVGHGRAA 120

Query: 123 KKQIH 127
           K Q+ 
Sbjct: 121 KAQVQ 125


>gi|269469245|gb|EEZ80771.1| Holliday junction resolvasome, endonuclease subunit [uncultured
           SUP05 cluster bacterium]
          Length = 156

 Score =  103 bits (258), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 54/156 (34%), Positives = 92/156 (58%), Gaps = 5/156 (3%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++I+G+DPG R TG+G+++       +++SG I +  +  L  R+  ++  +  ++K ++
Sbjct: 1   MKILGVDPGSRVTGFGLIEAQKLKFIYIASGCIRT--KGELTDRITTIFLEIDQIVKKYQ 58

Query: 65  PEEAAVEQVFVNKDAV---ATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
           P+   +E+ F+  D     A +KLG AR   I +  +  I + EY+PN IKKAV+G GH 
Sbjct: 59  PDVVVIERAFMRPDRPNPDAAIKLGHARGAIISAAGVNGITMVEYSPNQIKKAVVGKGHA 118

Query: 122 DKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYH 157
            K Q+  M++  +  +    +DAADALA A+CH YH
Sbjct: 119 TKDQVSYMVQESLKLNKAPQEDAADALAGAMCHGYH 154


>gi|312127830|ref|YP_003992704.1| crossover junction endodeoxyribonuclease ruvc [Caldicellulosiruptor
           hydrothermalis 108]
 gi|312622646|ref|YP_004024259.1| crossover junction endodeoxyribonuclease ruvc [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|311777849|gb|ADQ07335.1| crossover junction endodeoxyribonuclease RuvC [Caldicellulosiruptor
           hydrothermalis 108]
 gi|312203113|gb|ADQ46440.1| crossover junction endodeoxyribonuclease RuvC [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 164

 Score =  103 bits (258), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 54/160 (33%), Positives = 91/160 (56%), Gaps = 2/160 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           ++GIDPG+  TG+GI++   G     +  G I +      + RL  LY  L  +I  ++P
Sbjct: 1   MLGIDPGIALTGYGIIESKNGSEFKVIDYGRIETSSSLKKSMRLLHLYTELCSIISLYQP 60

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
           +  A+E++F +K++   + +G+AR + IL+     + + EY P  +K+++ G G  DK Q
Sbjct: 61  DVVAIEELFFSKNSKTAITIGEARGVIILTCIQNNLSIYEYTPLQVKQSITGYGRADKTQ 120

Query: 126 IHMMLKMLMPESFF-KGKDAADALAIAVCHAYHANSGYYK 164
           I  M+K L+  S   K  D ADALA+A+CH   ++S  Y+
Sbjct: 121 IQKMVKSLLGLSEIPKPDDVADALAVAMCHILSSSSVLYQ 160


>gi|260598337|ref|YP_003210908.1| Holliday junction resolvase [Cronobacter turicensis z3032]
 gi|260217514|emb|CBA31693.1| Crossover junction endodeoxyribonuclease ruvC [Cronobacter
           turicensis z3032]
          Length = 173

 Score =  103 bits (258), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 64/153 (41%), Positives = 96/153 (62%), Gaps = 7/153 (4%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQS---LAFRLCQLYEGLTDVIKNW 63
           I+GIDPG R TG+G++   G  L ++ SG    C+R S   L  RL  +Y G++++I  +
Sbjct: 4   ILGIDPGSRVTGYGVIRQTGRQLTYLGSG----CIRTSVTDLPSRLKLIYAGVSEIITQF 59

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P+  A+EQVF+ K+A + LKLGQAR  AI++     +PV EYA   +K+ V+G+G  +K
Sbjct: 60  HPDYFAIEQVFMAKNADSALKLGQARGAAIVAAVNQDLPVFEYAARQVKQTVVGIGSAEK 119

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
            Q+  M++ L+  S     DAADALAIA+ H +
Sbjct: 120 SQVQHMVRTLLKLSANPQADAADALAIAITHCH 152


>gi|52841518|ref|YP_095317.1| Holliday junction resolvase [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|81603398|sp|Q5ZW01|RUVC_LEGPH RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|52628629|gb|AAU27370.1| crossover junction endodeoxyribonuclease RuvC [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
          Length = 174

 Score =  103 bits (258), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 57/153 (37%), Positives = 99/153 (64%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++  +   + ++ SG I +     L+ +L Q+Y+G+ +++ ++ P 
Sbjct: 4   ILGIDPGSRVTGYGLIKESDRKIAYIDSGCIRTSNDTELSHKLLQIYDGICELMDHYSPT 63

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+EQ+F++ +  + LKLG AR +A+++ A  R  + EY+   IK++V+G G  +K Q+
Sbjct: 64  EVAIEQIFMHNNPNSALKLGHARGVAMVAAASHRAKIFEYSAREIKQSVVGYGAAEKDQV 123

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHAN 159
             M+  L+  +    KDAADALAIA+CH++  N
Sbjct: 124 SHMVVELLQLNRAPQKDAADALAIAICHSHMRN 156


>gi|15602843|ref|NP_245915.1| Holliday junction resolvase [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|13431842|sp|P57894|RUVC_PASMU RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|12721304|gb|AAK03062.1| RuvC [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 190

 Score =  103 bits (258), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 64/157 (40%), Positives = 100/157 (63%), Gaps = 1/157 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++  AG +L ++ SG I + V   L  RL ++Y G+ ++I  ++P+
Sbjct: 4   ILGIDPGSRVTGYGVIRQAGRHLEYLGSGVIRTSV-TDLPTRLKRIYMGVNEIILQYQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+E+VF+ K+A + LKLGQAR  AI++     +PV EYA   +K+ V+G+G  DK Q+
Sbjct: 63  MFAIEEVFLAKNANSALKLGQARGAAIVAAVNHDLPVFEYAARLVKQTVVGIGSADKIQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYY 163
             M+  ++  S     DAADALAIA+ HA+     ++
Sbjct: 123 QDMVTRILTLSEKPQADAADALAIAITHAHSLQHAFH 159


>gi|220932070|ref|YP_002508978.1| crossover junction endodeoxyribonuclease RuvC [Halothermothrix
           orenii H 168]
 gi|254767476|sp|B8CXG4|RUVC_HALOH RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|219993380|gb|ACL69983.1| crossover junction endodeoxyribonuclease RuvC [Halothermothrix
           orenii H 168]
          Length = 165

 Score =  103 bits (258), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 88/150 (58%), Gaps = 1/150 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+G+DPGL   G+ +++  G+    +  G+I +  +     RL  ++  + ++I  + P+
Sbjct: 3   ILGVDPGLAIVGYALIEKQGNKYRVIDYGSINTPSKLESVDRLKIIHTDMVNIINKYNPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           + AVE++F NK+    +++GQAR + +L+ + AR+ + EY P  +K+AV G G   K Q+
Sbjct: 63  QMAVEKLFFNKNVKTAIEVGQARGVILLAGSQARLKIYEYTPLQVKQAVAGYGRAHKSQV 122

Query: 127 HMMLKMLMP-ESFFKGKDAADALAIAVCHA 155
             M+K L+      K  D ADALAI++CH 
Sbjct: 123 QRMVKALLNLNEIPKPDDVADALAISICHG 152


>gi|164687539|ref|ZP_02211567.1| hypothetical protein CLOBAR_01180 [Clostridium bartlettii DSM
           16795]
 gi|164603313|gb|EDQ96778.1| hypothetical protein CLOBAR_01180 [Clostridium bartlettii DSM
           16795]
          Length = 165

 Score =  103 bits (257), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 54/154 (35%), Positives = 86/154 (55%), Gaps = 2/154 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG+   G+GI++   +    +  G + +        RL  +Y+G+  +IK +  +
Sbjct: 3   ILGIDPGIAIVGYGIIEYKNNKFRVIDYGAVTTNANTPTDQRLALVYKGIDILIKKYDID 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E++F NK+    + + QAR + +L+      P+ EY P  +K+ V+G G   K Q+
Sbjct: 63  EVAIEELFFNKNVKTAITVAQARGVIMLACTHNGKPIYEYTPLQVKQGVVGYGRAQKMQV 122

Query: 127 HMMLKMLMP-ESFFKGKDAADALAIAVCHAYHAN 159
             M+  L+  +   K  D ADALAIAVCHA HAN
Sbjct: 123 QQMVTSLLKLKEIPKPDDTADALAIAVCHA-HAN 155


>gi|289422392|ref|ZP_06424238.1| crossover junction endodeoxyribonuclease RuvC [Peptostreptococcus
           anaerobius 653-L]
 gi|289157227|gb|EFD05846.1| crossover junction endodeoxyribonuclease RuvC [Peptostreptococcus
           anaerobius 653-L]
          Length = 164

 Score =  103 bits (257), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 55/154 (35%), Positives = 83/154 (53%), Gaps = 2/154 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPGL   G+GIV+        +  G I +        RL  +Y G+  +   +  +
Sbjct: 3   ILGIDPGLAIIGYGIVEYKNSKFRTIDYGAITTPAEMPTVERLDMIYRGMNQLFHLYDID 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E ++E++F NK+    + + QAR + +LS     +P+ EY P  +K+ V G G  DK Q+
Sbjct: 63  EISIEELFFNKNITTGITVAQARGVILLSCVQHSVPIYEYTPLQVKQGVCGYGRADKSQV 122

Query: 127 H-MMLKMLMPESFFKGKDAADALAIAVCHAYHAN 159
             M+   L  +S  K  D ADALAIA+CHA H+N
Sbjct: 123 QRMVTSFLNLKSVPKPDDVADALAIAICHA-HSN 155


>gi|146312077|ref|YP_001177151.1| Holliday junction resolvase [Enterobacter sp. 638]
 gi|167012680|sp|A4WBM0|RUVC_ENT38 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|145318953|gb|ABP61100.1| Holliday junction endonuclease RuvC [Enterobacter sp. 638]
          Length = 173

 Score =  103 bits (257), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 52/128 (40%), Positives = 82/128 (64%), Gaps = 1/128 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I + V   L  RL  +Y G++++I  ++P+
Sbjct: 4   ILGIDPGSRITGYGVIRQVGRQLTYLGSGCIRTKV-DDLPSRLKLIYAGVSEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR +AI++     +PV EYA   +K+ V+G G   K Q+
Sbjct: 63  FFAIEQVFMAKNADSALKLGQARGVAIVAAVNQDLPVFEYAARQVKQTVVGTGGAAKSQV 122

Query: 127 HMMLKMLM 134
             M++ L+
Sbjct: 123 QHMVRTLL 130


>gi|51473230|ref|YP_066987.1| Holliday junction resolvase [Rickettsia typhi str. Wilmington]
 gi|81610846|sp|Q68XY7|RUVC_RICTY RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|51459542|gb|AAU03505.1| Holliday junction nuclease [Rickettsia typhi str. Wilmington]
          Length = 157

 Score =  103 bits (257), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 54/146 (36%), Positives = 83/146 (56%), Gaps = 1/146 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           ++GIDP L   GW +V      L +++SGTI +  +  +  RL  +   L  VI  ++P 
Sbjct: 3   VLGIDPALGNLGWALVAKEYTKLKYLASGTIKTHSKDEIHNRLAFINSTLEKVILKYQPN 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
            AA+E+ F+N ++V +LKLG AR   +       + + E+ PNT+KK V G GH  K+QI
Sbjct: 63  IAAIEETFINTNSVTSLKLGYARGAIMSLIGRYNLNMQEFKPNTVKKTVTGYGHAKKEQI 122

Query: 127 HMMLKMLMPES-FFKGKDAADALAIA 151
             M+K L+P +      D ADA+A+A
Sbjct: 123 LYMIKHLIPGTDLITNSDEADAVALA 148


>gi|54297205|ref|YP_123574.1| Holliday junction resolvase [Legionella pneumophila str. Paris]
 gi|81601888|sp|Q5X5S0|RUVC_LEGPA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|53750990|emb|CAH12401.1| Crossover junction endodeoxyribonuclease ruvC [Legionella
           pneumophila str. Paris]
          Length = 174

 Score =  103 bits (257), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 57/153 (37%), Positives = 99/153 (64%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++  +   + ++ SG I +     L+ +L Q+Y+G+ +++ ++ P 
Sbjct: 4   ILGIDPGSRVTGYGLIKESDRKIAYIDSGCIRTSNDVELSHKLLQIYDGICELMDHYSPT 63

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+EQ+F++ +  + LKLG AR +A+++ A  R  + EY+   IK++V+G G  +K Q+
Sbjct: 64  EVAIEQIFMHNNPNSALKLGHARGVAMVAAASHRAKICEYSAREIKQSVVGYGAAEKDQV 123

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHAN 159
             M+  L+  +    KDAADALAIA+CH++  N
Sbjct: 124 SHMVVELLQLNRAPQKDAADALAIAICHSHMRN 156


>gi|325290233|ref|YP_004266414.1| Crossover junction endodeoxyribonuclease ruvC [Syntrophobotulus
           glycolicus DSM 8271]
 gi|324965634|gb|ADY56413.1| Crossover junction endodeoxyribonuclease ruvC [Syntrophobotulus
           glycolicus DSM 8271]
          Length = 156

 Score =  103 bits (257), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 53/151 (35%), Positives = 84/151 (55%), Gaps = 1/151 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG   TG+G+++  G  +  V      +     +  RL  L E L +V+  + P 
Sbjct: 3   ILGIDPGTATTGYGLIEKTGQKITPVEYSCWRTPAGLPMPQRLLMLSEFLEEVLGKYSPS 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
              VE++F N++    + +GQAR + +L+ A  +IP  EY P  +K+AV G G   K+Q+
Sbjct: 63  HLVVEELFFNRNVTTVISVGQARGVILLAAAKYKIPAYEYTPLQVKQAVAGYGKATKQQV 122

Query: 127 HMMLKMLMP-ESFFKGKDAADALAIAVCHAY 156
             M+K ++  +   K  D ADALAI +CHA+
Sbjct: 123 QYMVKAILGLKECPKPDDTADALAIGICHAF 153


>gi|308234388|ref|ZP_07665125.1| crossover junction endodeoxyribonuclease RuvC [Atopobium vaginae
           DSM 15829]
 gi|328944204|ref|ZP_08241668.1| crossover junction endoribonuclease subunit C [Atopobium vaginae
           DSM 15829]
 gi|327491123|gb|EGF22898.1| crossover junction endoribonuclease subunit C [Atopobium vaginae
           DSM 15829]
          Length = 216

 Score =  103 bits (257), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 54/150 (36%), Positives = 88/150 (58%), Gaps = 1/150 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPGL  TGWGIV+  G      +   +V+   QSL  RL  +Y+G++  I+ ++P 
Sbjct: 3   ILGIDPGLAHTGWGIVETRGSVYRARAYDCVVTTSAQSLPERLDAIYQGISYAIERYQPV 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+E++F  ++  + +    +R  A+++ A A + + EY P  IK+AV+G G  DK+Q+
Sbjct: 63  HVAIEKIFFGENVRSAIDTAHSRGAALVACARAGVVLGEYTPMQIKQAVVGTGSADKRQV 122

Query: 127 HMMLKMLMPESFFKGKD-AADALAIAVCHA 155
             M++ ++        D  ADALA A+CHA
Sbjct: 123 IFMVRNILNLDHDPRPDHCADALAAAICHA 152


>gi|301168495|emb|CBW28085.1| putative crossover Holliday junction endodeoxyribonuclease RuvC
           [Bacteriovorax marinus SJ]
          Length = 179

 Score =  103 bits (257), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 54/153 (35%), Positives = 91/153 (59%), Gaps = 3/153 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++I+GIDPG R+ GW +++  G    +++SG +      +   RL  +++ + ++I+ +R
Sbjct: 1   MKILGIDPGSRKAGWALIEKEGRKTTYLASGVLKYDKIDNFLDRLGVIHQSICELIEEYR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARA--IAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
           P+E A+E +   K+  +  KL QAR   +A + P+  +  V EY+P  IK++V G GH D
Sbjct: 61  PDEVALESLIFVKNVNSLAKLAQARGAMLAAIIPSY-QGSVFEYSPTLIKQSVSGYGHAD 119

Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAIAVCHA 155
           K  I   L M+  +  FK  D +DALAIA+CH+
Sbjct: 120 KAAIEKTLGMIFGKIEFKTNDESDALAIALCHS 152


>gi|296282047|ref|ZP_06860045.1| Holliday junction resolvase [Citromicrobium bathyomarinum JL354]
          Length = 155

 Score =  103 bits (257), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 49/129 (37%), Positives = 78/129 (60%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+G+DP L  TGWG++   G  L  +++G I +  +  +  RL QL   L  VI+ +RP 
Sbjct: 4   ILGLDPSLTCTGWGVIRSEGSRLSHIANGQIATDAKAPMTERLAQLQRELAVVIEQYRPA 63

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A E++F+NK+  +TLKL QAR   + +     + V E+A   +KK+V+G G  +K+Q+
Sbjct: 64  RGACEEIFLNKNPKSTLKLAQARGSVLAACGAHGLDVREHAARYVKKSVVGTGAAEKRQV 123

Query: 127 HMMLKMLMP 135
             MLK+L+P
Sbjct: 124 QAMLKVLLP 132


>gi|254282357|ref|ZP_04957325.1| crossover junction endodeoxyribonuclease RuvC [gamma
           proteobacterium NOR51-B]
 gi|219678560|gb|EED34909.1| crossover junction endodeoxyribonuclease RuvC [gamma
           proteobacterium NOR51-B]
          Length = 176

 Score =  103 bits (257), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 53/128 (41%), Positives = 82/128 (64%), Gaps = 1/128 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R+TG+GI+ +      +V+SG I   V   LA RL  L+  L ++I  ++P 
Sbjct: 4   ILGIDPGSRKTGFGIIRLVSGRSTYVTSGVIRLPVEAELATRLGVLFASLNELIDEYQPT 63

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E ++EQVF+  +A + LKLGQAR  A+++     + V EY+   IK+AV+G G  DK+Q+
Sbjct: 64  ELSIEQVFMAHNAGSALKLGQARGAAMVACVQRDMAVHEYSARQIKQAVVGTGGADKQQV 123

Query: 127 -HMMLKML 133
            HM+ ++L
Sbjct: 124 QHMVTRLL 131


>gi|147919263|ref|YP_687001.1| holliday junction resolvasome, endonuclease subunit [uncultured
           methanogenic archaeon RC-I]
 gi|110622397|emb|CAJ37675.1| holliday junction resolvasome, endonuclease subunit [uncultured
           methanogenic archaeon RC-I]
          Length = 172

 Score =  103 bits (257), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 56/155 (36%), Positives = 90/155 (58%), Gaps = 1/155 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPG    G+GIV+   + L     G I +     +  RL  LY+ ++ VI  ++
Sbjct: 1   MRILGIDPGFALVGFGIVEAGKNGLKAGKYGHISTESGLPVPDRLKILYDDMSTVIAEYK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  AVE++F NK+    +    AR + +L+   A + V+EY P  +K+AV+G G   K+
Sbjct: 61  PDVVAVEELFFNKNVKTAIVASHARGVLVLAAVNAGLEVAEYTPLQVKQAVVGYGRATKQ 120

Query: 125 QIHMML-KMLMPESFFKGKDAADALAIAVCHAYHA 158
           Q+ +M+ ++L  +   K  D ADALA+A+CHA  A
Sbjct: 121 QVQLMVTRLLALKEVPKPDDTADALAVAICHANSA 155


>gi|222529106|ref|YP_002572988.1| Holliday junction resolvase [Caldicellulosiruptor bescii DSM 6725]
 gi|222455953|gb|ACM60215.1| crossover junction endodeoxyribonuclease RuvC [Caldicellulosiruptor
           bescii DSM 6725]
          Length = 164

 Score =  103 bits (257), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 54/161 (33%), Positives = 91/161 (56%), Gaps = 4/161 (2%)

Query: 7   IIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           ++GIDPG+  TG+GI++   G     +  G I +      + R   LY  L  +I  ++P
Sbjct: 1   MLGIDPGIALTGYGIIESKNGSEFKVIDYGRIETSSSLKKSMRFLHLYTELCSIISLYQP 60

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
           +  A+E++F NK++   + +G+AR + IL+     + + EY P  +K+++ G G  +K Q
Sbjct: 61  DVVAIEELFFNKNSKTAITIGEARGVIILTCIQNNLSIYEYTPLQVKQSITGYGRANKTQ 120

Query: 126 IHMMLKML--MPESFFKGKDAADALAIAVCHAYHANSGYYK 164
           I  M+K L  +PE   K  D ADALA+A+CH   ++S  Y+
Sbjct: 121 IQKMVKSLLSLPE-IPKPDDVADALAVAMCHILSSSSVLYQ 160


>gi|317121685|ref|YP_004101688.1| crossover junction endodeoxyribonuclease RuvC [Thermaerobacter
           marianensis DSM 12885]
 gi|315591665|gb|ADU50961.1| crossover junction endodeoxyribonuclease RuvC [Thermaerobacter
           marianensis DSM 12885]
          Length = 185

 Score =  103 bits (256), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 52/130 (40%), Positives = 84/130 (64%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++++GIDPG    G+G+V VAG  L  V+ G I +   Q  A RL  +Y  L +++  +R
Sbjct: 1   MQVLGIDPGTATMGFGVVAVAGTTLVPVTYGVIRTPASQPPALRLASIYRDLQELLGRYR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  AVE++F+ K+  + L +GQAR +A+L+ A A +PV EYAP+ +K+AV+G G   K 
Sbjct: 61  PQAMAVERLFLQKNRSSALHVGQARGVALLAAAQAGLPVYEYAPHEVKQAVVGYGRASKA 120

Query: 125 QIHMMLKMLM 134
           Q+  M++ L+
Sbjct: 121 QVQRMVQALL 130


>gi|188533630|ref|YP_001907427.1| Holliday junction resolvase [Erwinia tasmaniensis Et1/99]
 gi|238691996|sp|B2VJ93|RUVC_ERWT9 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|188028672|emb|CAO96534.1| Crossover junction endodeoxyribonuclease [Erwinia tasmaniensis
           Et1/99]
          Length = 173

 Score =  103 bits (256), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 64/153 (41%), Positives = 96/153 (62%), Gaps = 7/153 (4%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQS---LAFRLCQLYEGLTDVIKNW 63
           I+GIDPG R TG+G++   G  L ++ SG    C+R S   L  RL  +Y G++++I  +
Sbjct: 4   ILGIDPGSRITGYGVIRQTGRQLTYLGSG----CIRTSVTDLPSRLKLIYAGVSEIITQF 59

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +PE  A+EQVF+ K+A + LKLGQAR  AI++     +PV EYA   +K+ V+G+G  +K
Sbjct: 60  QPEYFAIEQVFMAKNADSALKLGQARGAAIVAAVNQDLPVFEYAARQVKQTVVGIGSAEK 119

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
            Q+  M++ L+        DAADALAIA+ H +
Sbjct: 120 SQVQHMVRTLLKLPANPQADAADALAIAITHCH 152


>gi|76789239|ref|YP_328325.1| Holliday junction resolvase [Chlamydia trachomatis A/HAR-13]
 gi|91771933|sp|Q3KLJ5|RUVC_CHLTA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|76167769|gb|AAX50777.1| RuvC [Chlamydia trachomatis A/HAR-13]
          Length = 170

 Score =  103 bits (256), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 56/156 (35%), Positives = 95/156 (60%), Gaps = 4/156 (2%)

Query: 7   IIGIDPGLRRTGWGIVDVAGD-NLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           I+GIDPG    G+ ++ V    ++   S G +    + +LA R  QL+  ++ +++   P
Sbjct: 5   IMGIDPGTLVCGYALIKVENRYHIHPHSFGKVKLSQKLALAHRYKQLFTEISTILQQESP 64

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
           +   +E  +V+K+  +T+KLG AR + +L+ +L  +PV EYAPNT KKA +G G+  KKQ
Sbjct: 65  KAVVLETQYVHKNPQSTIKLGMARGVLLLAASLQDVPVFEYAPNTAKKAAVGKGNASKKQ 124

Query: 126 IHMMLKMLM--PESFFK-GKDAADALAIAVCHAYHA 158
           + +M+  L+  P+   +  +D ADA A+A+CHA+ A
Sbjct: 125 VQLMVSKLLRVPDLLAEDNEDIADAFALAMCHAHLA 160


>gi|303253271|ref|ZP_07339420.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|307248176|ref|ZP_07530204.1| Crossover junction endodeoxyribonuclease ruvC [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|302647953|gb|EFL78160.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|306855353|gb|EFM87528.1| Crossover junction endodeoxyribonuclease ruvC [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
          Length = 192

 Score =  103 bits (256), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 65/150 (43%), Positives = 96/150 (64%), Gaps = 1/150 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G +L ++ SG I + V   L  RL ++Y G+T++I  + P+
Sbjct: 4   ILGIDPGSRVTGYGVIRQTGCHLEYLGSGAIRTSV-DDLPTRLKRIYAGVTEIITQFHPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR  AI++     +PV EYA   +K+ V G+G  DK Q+
Sbjct: 63  MFAIEQVFMAKNADSALKLGQARGTAIVAAVNHDLPVFEYAARLVKQTVTGIGSADKIQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAY 156
             M+  ++  S     DAADALAIA+ HA+
Sbjct: 123 QDMVTRMLQLSSKPQADAADALAIAITHAH 152


>gi|251793067|ref|YP_003007793.1| Holliday junction resolvase [Aggregatibacter aphrophilus NJ8700]
 gi|247534460|gb|ACS97706.1| crossover junction endodeoxyribonuclease RuvC [Aggregatibacter
           aphrophilus NJ8700]
          Length = 190

 Score =  103 bits (256), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 65/157 (41%), Positives = 98/157 (62%), Gaps = 1/157 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I + V   L  RL ++Y G+T++I  ++P+
Sbjct: 4   ILGIDPGSRVTGYGVIRQHGRQLEYLGSGAIRTQV-DDLPTRLKRIYAGVTEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
              +EQVF+ K+A + LKLGQAR  AI++     +PV EYA   IK+ V+G+G  DK Q+
Sbjct: 63  MFVIEQVFMAKNADSALKLGQARGTAIVAAVNHDLPVFEYAARLIKQTVVGIGSADKIQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYY 163
             M+  ++  S     DAADALAIA+ HA+     ++
Sbjct: 123 QDMVMRILNLSDKPQADAADALAIAITHAHSIQHSFH 159


>gi|15605231|ref|NP_220017.1| Holliday junction resolvase [Chlamydia trachomatis D/UW-3/CX]
 gi|166154717|ref|YP_001654835.1| Holliday junction resolvase [Chlamydia trachomatis 434/Bu]
 gi|166155592|ref|YP_001653847.1| Holliday junction resolvase [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|237802931|ref|YP_002888125.1| Holliday junction resolvase [Chlamydia trachomatis B/Jali20/OT]
 gi|237804853|ref|YP_002889007.1| Holliday junction resolvase [Chlamydia trachomatis B/TZ1A828/OT]
 gi|255311320|ref|ZP_05353890.1| Holliday junction resolvase [Chlamydia trachomatis 6276]
 gi|255317621|ref|ZP_05358867.1| Holliday junction resolvase [Chlamydia trachomatis 6276s]
 gi|255348879|ref|ZP_05380886.1| Holliday junction resolvase [Chlamydia trachomatis 70]
 gi|255503419|ref|ZP_05381809.1| Holliday junction resolvase [Chlamydia trachomatis 70s]
 gi|255507097|ref|ZP_05382736.1| Holliday junction resolvase [Chlamydia trachomatis D(s)2923]
 gi|301335991|ref|ZP_07224235.1| Holliday junction resolvase [Chlamydia trachomatis L2tet1]
 gi|6685941|sp|O84510|RUVC_CHLTR RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|226698749|sp|B0BCE1|RUVC_CHLTB RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|238687388|sp|B0B876|RUVC_CHLT2 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|3328939|gb|AAC68103.1| Crossover Junction Endonuclease [Chlamydia trachomatis D/UW-3/CX]
 gi|165930705|emb|CAP04202.1| endodeoxyribonuclease [Chlamydia trachomatis 434/Bu]
 gi|165931580|emb|CAP07156.1| endodeoxyribonuclease [Chlamydia trachomatis L2b/UCH-1/proctitis]
 gi|231273153|emb|CAX10066.1| endodeoxyribonuclease [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231274165|emb|CAX10959.1| endodeoxyribonuclease [Chlamydia trachomatis B/Jali20/OT]
 gi|289525547|emb|CBJ15025.1| endodeoxyribonuclease [Chlamydia trachomatis Sweden2]
 gi|296435107|gb|ADH17285.1| Holliday junction resolvase [Chlamydia trachomatis E/150]
 gi|296436035|gb|ADH18209.1| Holliday junction resolvase [Chlamydia trachomatis G/9768]
 gi|296436963|gb|ADH19133.1| Holliday junction resolvase [Chlamydia trachomatis G/11222]
 gi|296437896|gb|ADH20057.1| Holliday junction resolvase [Chlamydia trachomatis G/11074]
 gi|296438827|gb|ADH20980.1| Holliday junction resolvase [Chlamydia trachomatis E/11023]
 gi|297140396|gb|ADH97154.1| Holliday junction resolvase [Chlamydia trachomatis G/9301]
 gi|297748632|gb|ADI51178.1| RuvC [Chlamydia trachomatis D-EC]
 gi|297749512|gb|ADI52190.1| RuvC [Chlamydia trachomatis D-LC]
          Length = 170

 Score =  103 bits (256), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 56/156 (35%), Positives = 95/156 (60%), Gaps = 4/156 (2%)

Query: 7   IIGIDPGLRRTGWGIVDVAGD-NLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           I+GIDPG    G+ ++ V    ++   S G +    + +LA R  QL+  ++ +++   P
Sbjct: 5   IMGIDPGTLVCGYALIKVENRYHIHPHSFGKVKLSQKLALAHRYKQLFTEISTILQQESP 64

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
           +   +E  +V+K+  +T+KLG AR + +L+ +L  +PV EYAPNT KKA +G G+  KKQ
Sbjct: 65  KAVVLETQYVHKNPQSTIKLGMARGVLLLAASLQDVPVFEYAPNTAKKAAVGKGNASKKQ 124

Query: 126 IHMMLKMLM--PESFFK-GKDAADALAIAVCHAYHA 158
           + +M+  L+  P+   +  +D ADA A+A+CHA+ A
Sbjct: 125 VQLMVSKLLRVPDLLAEDNEDIADAFALAMCHAHLA 160


>gi|309790184|ref|ZP_07684756.1| crossover junction endodeoxyribonuclease RuvC [Oscillochloris
           trichoides DG6]
 gi|308227769|gb|EFO81425.1| crossover junction endodeoxyribonuclease RuvC [Oscillochloris
           trichoides DG6]
          Length = 158

 Score =  102 bits (255), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 60/158 (37%), Positives = 94/158 (59%), Gaps = 1/158 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R IGIDPG  R GWG+V+  G ++  V  G + +      A RL  LY GL  +++ ++
Sbjct: 1   MRTIGIDPGTARMGWGVVEKQGSDVRLVEFGVLTTPAGMPQAERLHHLYTGLVQILQRYQ 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  AVE++F  K+    + +GQAR + +L+   A + + EY P  +K+A+ G G  DK+
Sbjct: 61  PQAGAVEELFFGKNVNTAITVGQARGVVLLALHQAGLSIHEYKPLVVKQALTGYGGADKR 120

Query: 125 QIHMMLKMLMP-ESFFKGKDAADALAIAVCHAYHANSG 161
           Q+  M+++ +   S  +  DAADALAIA+CHAY    G
Sbjct: 121 QMQEMVRITLGLSSIPRPDDAADALAIAICHAYTNQVG 158


>gi|239617282|ref|YP_002940604.1| crossover junction endodeoxyribonuclease RuvC [Kosmotoga olearia
           TBF 19.5.1]
 gi|239506113|gb|ACR79600.1| crossover junction endodeoxyribonuclease RuvC [Kosmotoga olearia
           TBF 19.5.1]
          Length = 168

 Score =  102 bits (255), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 43/129 (33%), Positives = 81/129 (62%)

Query: 6   RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           RI+GIDPG    G+G++DV+G  +  V  G I +   + +  RL ++Y+ L ++++ +RP
Sbjct: 7   RILGIDPGFGTLGYGLIDVSGSKVSLVGYGVIQTKPGEPIPNRLLKIYDRLHEIVEEYRP 66

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
           +EAA+E++F  ++    +++G+AR + +L      IP+ EY P+ +K++V G G  +K Q
Sbjct: 67  DEAAIEELFFFRNVTTAIQVGEARGVVLLVLKQLSIPIFEYTPHQVKQSVTGYGRSEKGQ 126

Query: 126 IHMMLKMLM 134
           I  ++K  +
Sbjct: 127 IQRVMKKFL 135


>gi|313206320|ref|YP_004045497.1| crossover junction endodeoxyribonuclease ruvc [Riemerella
           anatipestifer DSM 15868]
 gi|312445636|gb|ADQ81991.1| crossover junction endodeoxyribonuclease RuvC [Riemerella
           anatipestifer DSM 15868]
 gi|315023186|gb|EFT36197.1| Holliday junction resolvase [Riemerella anatipestifer RA-YM]
 gi|325336235|gb|ADZ12509.1| Holliday junction resolvasome, endonuclease subunit [Riemerella
           anatipestifer RA-GD]
          Length = 184

 Score =  102 bits (255), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 57/157 (36%), Positives = 89/157 (56%), Gaps = 4/157 (2%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG    G+GI+ V    +  VS   ++     +   +L  ++E    +I  + P+
Sbjct: 7   ILGIDPGTSVMGFGIISVLNQKMELVSINELILKKYPNHETKLKYIFERTLSLIDEFHPD 66

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E  F  K+  + LKLG+A+ +A+ +     IP++EY+P  IK A+ G G+  K+Q+
Sbjct: 67  EVALEAPFYGKNVQSMLKLGRAQGVAMAASLYRDIPITEYSPKKIKMAITGNGNASKEQV 126

Query: 127 HMMLKMLMPESFFKGK--DAADALAIAVCHAYHANSG 161
             ML+ L+    F  K  DA+D LA+AVCH  H NSG
Sbjct: 127 AGMLQNLLKLKEFPTKYLDASDGLAVAVCH--HFNSG 161


>gi|229586357|ref|YP_002844858.1| Holliday junction resolvase [Rickettsia africae ESF-5]
 gi|259495693|sp|C3PMF5|RUVC_RICAE RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|228021407|gb|ACP53115.1| Crossover junction endodeoxyribonuclease RuvC [Rickettsia africae
           ESF-5]
          Length = 157

 Score =  102 bits (255), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 54/146 (36%), Positives = 83/146 (56%), Gaps = 1/146 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDP L   GW +V      L +++SG I +  + ++  RL  +   L  VI  ++P 
Sbjct: 3   ILGIDPALGSLGWAVVAKENAQLKYLASGIIRTNSKDAIHHRLAFINSTLEKVILEYQPN 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
            AA+E+ FVN ++V +LKLG AR   +       + + E+ PNT+KK V G GH +K Q+
Sbjct: 63  MAAIEETFVNTNSVTSLKLGYARGAIMSLIGRYNLDMREFKPNTVKKTVTGYGHAEKDQM 122

Query: 127 HMMLKMLMP-ESFFKGKDAADALAIA 151
             M+K+L+   +     D ADA+AIA
Sbjct: 123 LHMIKLLLSGTALITNSDEADAVAIA 148


>gi|62180476|ref|YP_216893.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|81309668|sp|Q57N99|RUVC_SALCH RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|62128109|gb|AAX65812.1| Holliday junction nuclease [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
          Length = 173

 Score =  102 bits (255), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 62/150 (41%), Positives = 95/150 (63%), Gaps = 1/150 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I + V   L  RL  +Y G+T++I  ++P+
Sbjct: 4   ILGIDPGSRITGYGVIRQVGRQLTYLGSGCIRTKV-DDLPSRLKLIYAGVTEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQ R +AI++     +PV EYA   +K+ V+G+G  +K Q+
Sbjct: 63  YFAIEQVFMAKNADSALKLGQVRGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAY 156
             M++ L+        DAADALAIA+ H +
Sbjct: 123 QHMVRTLLKLPANPQADAADALAIAITHCH 152


>gi|15618531|ref|NP_224817.1| Holliday junction resolvase [Chlamydophila pneumoniae CWL029]
 gi|15836153|ref|NP_300677.1| Holliday junction resolvase [Chlamydophila pneumoniae J138]
 gi|16752419|ref|NP_444678.1| Holliday junction resolvase [Chlamydophila pneumoniae AR39]
 gi|33241978|ref|NP_876919.1| Holliday junction resolvase [Chlamydophila pneumoniae TW-183]
 gi|6685954|sp|Q9Z7T3|RUVC_CHLPN RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|4376918|gb|AAD18760.1| Crossover Junction Endonuclease [Chlamydophila pneumoniae CWL029]
 gi|7189061|gb|AAF38009.1| Holliday junction resolvase [Chlamydophila pneumoniae AR39]
 gi|8978993|dbj|BAA98828.1| crossover junction endonuclease [Chlamydophila pneumoniae J138]
 gi|33236488|gb|AAP98576.1| RuvC [Chlamydophila pneumoniae TW-183]
          Length = 168

 Score =  102 bits (255), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 61/158 (38%), Positives = 87/158 (55%), Gaps = 4/158 (2%)

Query: 7   IIGIDPGLRRTGWGIVDVAGD-NLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           IIG+DPG    G+ I+ V     L   S G I       L  R   L+E L+ V+ + +P
Sbjct: 5   IIGVDPGTIVAGYAIIAVEQRYQLRPYSYGAIRLSSDMPLPMRYKTLFEQLSGVLDDTQP 64

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
               +E  FVNK+  +T+KL  AR I +L+ A   I + EYAPN  KKAV+G GH  K+Q
Sbjct: 65  NAMVLETQFVNKNPQSTMKLAMARGIVLLAAAQRDILIFEYAPNVAKKAVVGKGHASKRQ 124

Query: 126 IHMMLKMLM--PESFF-KGKDAADALAIAVCHAYHANS 160
           + +M+  ++  PE      +D ADA A+A+CH + A S
Sbjct: 125 VQVMVSKILNVPEVLHPSNEDIADAFALAICHTHVARS 162


>gi|52424766|ref|YP_087903.1| Holliday junction resolvase [Mannheimia succiniciproducens MBEL55E]
 gi|81609597|sp|Q65UP2|RUVC_MANSM RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|52306818|gb|AAU37318.1| RuvC protein [Mannheimia succiniciproducens MBEL55E]
          Length = 199

 Score =  102 bits (255), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 65/150 (43%), Positives = 95/150 (63%), Gaps = 1/150 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+GI+   G  L ++ SG I + V + L  RL ++Y G+T++I  +RP+
Sbjct: 13  ILGIDPGSRVTGYGIIRQTGRTLEYLGSGAIRTQV-EDLPTRLKRIYAGVTEIITQFRPD 71

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+E+VF+ K+  + LKLGQAR  AI++     +PV EYA   +K+ V G G  DK Q+
Sbjct: 72  MFAIEEVFLAKNPNSALKLGQARGTAIVAAVNQNLPVFEYAARLVKQTVTGSGSADKVQV 131

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAY 156
             M+  ++  S     DAADALAIA+ HA+
Sbjct: 132 QDMVTRILRLSDKPQADAADALAIAITHAH 161


>gi|294085859|ref|YP_003552619.1| Holliday junction resolvase [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292665434|gb|ADE40535.1| Holliday junction resolvase [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 200

 Score =  102 bits (255), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 52/130 (40%), Positives = 80/130 (61%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPGLR TGWG++DV    L  V++G I    ++  A RL ++ + L+ +I   +
Sbjct: 1   MRVLGIDPGLRATGWGVIDVTAGRLIHVANGVIKPNHKEPDAQRLGRIADDLSAIIAAHQ 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P  AA+E++FV K A + LKLG AR + I+    A + V E A   +KK++ G G  DK+
Sbjct: 61  PTYAAIEEIFVAKSAKSALKLGMARGVGIMICGQAGLEVHELAARLVKKSITGTGTADKR 120

Query: 125 QIHMMLKMLM 134
           QI  M+  L+
Sbjct: 121 QIQDMVSRLL 130


>gi|157828031|ref|YP_001494273.1| Holliday junction resolvase [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165932729|ref|YP_001649518.1| Holliday junction resolvase [Rickettsia rickettsii str. Iowa]
 gi|166233294|sp|A8GQU0|RUVC_RICRS RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|189046076|sp|B0BW86|RUVC_RICRO RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|157800512|gb|ABV75765.1| Holliday junction resolvase [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165907816|gb|ABY72112.1| crossover junction endodeoxyribonuclease [Rickettsia rickettsii
           str. Iowa]
          Length = 157

 Score =  102 bits (255), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 54/146 (36%), Positives = 83/146 (56%), Gaps = 1/146 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDP L   GW +V      L +++SG I +  + ++  RL  +   L  VI  ++P 
Sbjct: 3   ILGIDPALGSLGWAVVAKETAQLKYLASGIIRTNSKDAMHHRLAFINSTLEKVILEYQPN 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
            AA+E+ FVN ++V +LKLG AR   +       + + E+ PNT+KK V G GH +K Q+
Sbjct: 63  MAAIEETFVNTNSVTSLKLGYARGAIMSLIGRYNLDMREFKPNTVKKTVTGYGHAEKDQM 122

Query: 127 HMMLKMLMP-ESFFKGKDAADALAIA 151
             M+K+L+   +     D ADA+AIA
Sbjct: 123 LHMIKLLLSGTALITNSDEADAVAIA 148


>gi|218288866|ref|ZP_03493117.1| crossover junction endodeoxyribonuclease RuvC [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218240955|gb|EED08132.1| crossover junction endodeoxyribonuclease RuvC [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 184

 Score =  102 bits (254), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 50/131 (38%), Positives = 83/131 (63%), Gaps = 1/131 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +RI+G+DPGL R G+GI++   GD+L  V+ G I +     L  RL  +++ LT++ +  
Sbjct: 4   LRILGVDPGLARLGFGIIERGPGDSLHHVAHGCIETDADTPLPERLRHIFQQLTELCRTH 63

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RP    VE++F +++A     +GQAR +A+L+ A A + V EY P  +K+AV G G  DK
Sbjct: 64  RPAVMVVEELFFSRNATTAFTVGQARGVALLAGAEAGLAVMEYTPMQVKQAVTGYGRADK 123

Query: 124 KQIHMMLKMLM 134
           +Q+  M+++L+
Sbjct: 124 RQVQEMVRLLL 134


>gi|271500733|ref|YP_003333758.1| crossover junction endodeoxyribonuclease RuvC [Dickeya dadantii
           Ech586]
 gi|270344288|gb|ACZ77053.1| crossover junction endodeoxyribonuclease RuvC [Dickeya dadantii
           Ech586]
          Length = 173

 Score =  102 bits (254), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 64/150 (42%), Positives = 95/150 (63%), Gaps = 1/150 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+GIV   G  + ++ SG I + V   L  RL  +Y G++++I  ++P+
Sbjct: 4   ILGIDPGSRVTGYGIVRQQGRQITYLGSGCIRTGV-DDLPTRLKLIYAGVSEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ ++A + LKLGQAR  AI++     +PV EYA   +K+ V+G G  +K Q+
Sbjct: 63  YFAIEQVFMARNADSALKLGQARGAAIVAAVNQSLPVFEYAARQVKQTVVGTGAAEKSQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAY 156
             M+K L+  S     DAADALAIA+ H +
Sbjct: 123 QHMVKTLLKLSANPQADAADALAIAITHCH 152


>gi|313888451|ref|ZP_07822118.1| crossover junction endodeoxyribonuclease RuvC [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312845480|gb|EFR32874.1| crossover junction endodeoxyribonuclease RuvC [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 164

 Score =  102 bits (254), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 89/149 (59%), Gaps = 1/149 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG+   G+G +++ G++   +  G I +  +  L  RL  +YE + ++I+ ++P+
Sbjct: 3   ILGIDPGIAIVGYGFLELKGNSYKVLDYGAITTEAKVPLPERLNTIYEEMNELIERYKPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           + A E++F NK+    + + QAR + +L+   +   + EY P  +K+A++G G   K Q+
Sbjct: 63  DIAFEELFFNKNVKTAITVAQARGVEVLAAKESGAGLYEYTPLQVKQAIVGYGRATKNQV 122

Query: 127 HMMLKMLMP-ESFFKGKDAADALAIAVCH 154
             M+++++  E   K  D ADALA+A+ H
Sbjct: 123 QEMVRIILNLEKVPKPDDVADALAVAITH 151


>gi|34580887|ref|ZP_00142367.1| crossover junction endodeoxyribonuclease RuvC [Rickettsia sibirica
           246]
 gi|238650707|ref|YP_002916560.1| Holliday junction resolvase [Rickettsia peacockii str. Rustic]
 gi|259495694|sp|C4K1R1|RUVC_RICPU RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|28262272|gb|EAA25776.1| crossover junction endodeoxyribonuclease RuvC [Rickettsia sibirica
           246]
 gi|238624805|gb|ACR47511.1| Holliday junction resolvase [Rickettsia peacockii str. Rustic]
          Length = 157

 Score =  102 bits (254), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 54/146 (36%), Positives = 83/146 (56%), Gaps = 1/146 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDP L   GW +V      L +++SG I +  + ++  RL  +   L  VI  ++P 
Sbjct: 3   ILGIDPALGSLGWAVVAKETAQLKYLASGIIRTNSKDAIHHRLAFINSTLEKVILEYQPN 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
            AA+E+ FVN ++V +LKLG AR   +       + + E+ PNT+KK V G GH +K Q+
Sbjct: 63  MAAIEETFVNTNSVTSLKLGYARGAIMSLIGRYNLDMREFKPNTVKKTVTGYGHAEKDQM 122

Query: 127 HMMLKMLMP-ESFFKGKDAADALAIA 151
             M+K+L+   +     D ADA+AIA
Sbjct: 123 LHMIKLLLSGTALITNSDEADAVAIA 148


>gi|149370094|ref|ZP_01889945.1| Holliday junction resolvase [unidentified eubacterium SCB49]
 gi|149356585|gb|EDM45141.1| Holliday junction resolvase [unidentified eubacterium SCB49]
          Length = 186

 Score =  102 bits (254), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 60/163 (36%), Positives = 93/163 (57%), Gaps = 4/163 (2%)

Query: 1   MRKSIRII-GIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDV 59
           M K+ +II GIDPG    G+G++ V G  + F+    +          RL  +++   ++
Sbjct: 1   MSKTEKIILGIDPGTSIMGFGLIKVVGKKMEFMLLNELQLSKYDDHYKRLKIIFDRTIEL 60

Query: 60  IKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVG 119
           I N+ P+E A+E  F  K+  + LKLG+A+ +A+ +     IP++EYAP  IK A+ G G
Sbjct: 61  IDNYHPDEIAIEAPFFGKNVQSMLKLGRAQGVAMAAGLSREIPITEYAPKKIKMAITGSG 120

Query: 120 HGDKKQIHMMLK-MLMPESFFKGKDAADALAIAVCHAYHANSG 161
           +  K+Q+  ML+ ML  ++  K  D+ D LA AVCH Y  NSG
Sbjct: 121 NASKEQVAKMLQSMLGLKTLPKNLDSTDGLAAAVCHFY--NSG 161


>gi|255658186|ref|ZP_05403595.1| crossover junction endodeoxyribonuclease RuvC [Mitsuokella
           multacida DSM 20544]
 gi|260849494|gb|EEX69501.1| crossover junction endodeoxyribonuclease RuvC [Mitsuokella
           multacida DSM 20544]
          Length = 164

 Score =  102 bits (254), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 59/155 (38%), Positives = 91/155 (58%), Gaps = 3/155 (1%)

Query: 8   IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEE 67
           +GIDPG    G+G V+  G  L   + G+I +  +  +  RL ++Y+ L  +IK ++P+ 
Sbjct: 4   LGIDPGTAICGFGFVESRGSRLIPRAYGSIFTSPKMKMEDRLMKIYDELDALIKKYKPDV 63

Query: 68  AAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ-I 126
             VE++F N++    + +GQAR I +L+ A   + + E  P  IK+ V G G  DKKQ I
Sbjct: 64  MGVEKLFFNRNVTTAIPVGQARGIVLLTAAKNGLRLVERTPMQIKQDVTGYGKADKKQVI 123

Query: 127 HMMLKML-MPESFFKGKDAADALAIAVCHAYHANS 160
           +M+ K+L +PE   K  D ADALAIA+C  +  NS
Sbjct: 124 YMVTKILNLPEP-PKPDDTADALAIAICTTHCLNS 157


>gi|109899253|ref|YP_662508.1| crossover junction endodeoxyribonuclease RuvC [Pseudoalteromonas
           atlantica T6c]
 gi|123064359|sp|Q15RN4|RUVC_PSEA6 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|109701534|gb|ABG41454.1| crossover junction endodeoxyribonuclease RuvC [Pseudoalteromonas
           atlantica T6c]
          Length = 173

 Score =  102 bits (253), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 64/165 (38%), Positives = 104/165 (63%), Gaps = 8/165 (4%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVR---QSLAFRLCQLYEGLTDVIKNW 63
           I+GIDPG R TG+G++  AG    ++ SG    C+R    +LA RL Q+++G++ +I  +
Sbjct: 4   ILGIDPGSRITGYGVIQRAGRQQQYLGSG----CIRMQGDALAPRLQQIFDGVSQLILQY 59

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +P+  A+EQVF+ K+  + LKLGQAR  AI++ +   + V+EY+   IK++V+G G+  K
Sbjct: 60  KPDMFAIEQVFMAKNPDSALKLGQARGAAIVAASNQGLDVAEYSARQIKQSVVGNGNAQK 119

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
            Q+  M+  ++        DAADALA+A+CH+ H N    K++ Q
Sbjct: 120 SQVQHMVTFILKLPGTPQADAADALAVALCHS-HTNENLIKMSGQ 163


>gi|294782151|ref|ZP_06747477.1| crossover junction endodeoxyribonuclease RuvC [Fusobacterium sp.
           1_1_41FAA]
 gi|294480792|gb|EFG28567.1| crossover junction endodeoxyribonuclease RuvC [Fusobacterium sp.
           1_1_41FAA]
          Length = 194

 Score =  102 bits (253), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 54/151 (35%), Positives = 82/151 (54%), Gaps = 1/151 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R+IGIDPG    G+GI+D   +    V  G I++    S   RL  +Y  L  ++K ++
Sbjct: 1   MRVIGIDPGTAIVGYGIIDYNKNKYSIVDYGVILTSKDLSNEERLEIVYNELDKILKKYK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           PE  A+E +F  K+    + + QAR + +L+     IP+S Y P  +K  + G G  +KK
Sbjct: 61  PEFMAIEDLFYFKNNKTVISVAQARGVILLAGKQNNIPISNYTPLQVKIGITGYGKAEKK 120

Query: 125 QIHMML-KMLMPESFFKGKDAADALAIAVCH 154
           Q+ +M+ K L      K  DAADALAI + H
Sbjct: 121 QVQLMVQKFLGLSEIPKPDDAADALAICITH 151


>gi|300717085|ref|YP_003741888.1| Crossover junction endodeoxyribonuclease [Erwinia billingiae Eb661]
 gi|299062921|emb|CAX60041.1| Crossover junction endodeoxyribonuclease [Erwinia billingiae Eb661]
          Length = 174

 Score =  102 bits (253), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 64/153 (41%), Positives = 96/153 (62%), Gaps = 7/153 (4%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQS---LAFRLCQLYEGLTDVIKNW 63
           I+GIDPG R TG+G++   G  L ++ SG    C+R +   L  RL  +Y G++++I  +
Sbjct: 4   ILGIDPGSRITGYGVIRQVGRQLTYLGSG----CIRTNVVDLPSRLKLIYAGVSEIITQF 59

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +PE  A+EQVF+ K+A + LKLGQAR  AI++     +PV EYA   +K+ V+G G  +K
Sbjct: 60  QPEFFAIEQVFMAKNADSALKLGQARGAAIVAAVNHDLPVFEYAARQVKQTVVGTGSAEK 119

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
            Q+  M++ L+  S     DAADALAIA+ H +
Sbjct: 120 SQVQHMVRTLLKLSANPQADAADALAIAITHCH 152


>gi|256827687|ref|YP_003151646.1| crossover junction endodeoxyribonuclease RuvC [Cryptobacterium
           curtum DSM 15641]
 gi|256583830|gb|ACU94964.1| crossover junction endodeoxyribonuclease RuvC [Cryptobacterium
           curtum DSM 15641]
          Length = 174

 Score =  102 bits (253), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 49/128 (38%), Positives = 75/128 (58%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           ++GIDPGL  TGWGIV+  G  L   + G IV+   Q L+ RL ++YE +  VI ++RP 
Sbjct: 6   VMGIDPGLAHTGWGIVNQTGLRLSCEAYGCIVTTAAQPLSSRLNKIYEQIGAVINHYRPA 65

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
              +E ++   +  +    GQAR  A+++ A  +I V EY P+ IK AV+G G  DK Q+
Sbjct: 66  CVGIETIWFGNNVTSAFATGQARGAALVACAQGKIQVGEYTPSAIKMAVVGTGSADKHQV 125

Query: 127 HMMLKMLM 134
             M+  ++
Sbjct: 126 QYMVAQIL 133


>gi|85059238|ref|YP_454940.1| Holliday junction resolvase [Sodalis glossinidius str. 'morsitans']
 gi|123725411|sp|Q2NTJ0|RUVC_SODGM RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|84779758|dbj|BAE74535.1| crossover junction endodeoxyribonuclease [Sodalis glossinidius str.
           'morsitans']
          Length = 173

 Score =  101 bits (252), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 54/128 (42%), Positives = 82/128 (64%), Gaps = 1/128 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+GIV   G  L ++ SG I + V   L  RL  +Y G++++I  ++P+
Sbjct: 4   ILGIDPGSRITGYGIVRQEGCKLTYLGSGCIRTKV-DDLPARLKLIYAGVSEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR +AI+      +PV EYA   +K+ V+G G  +K Q+
Sbjct: 63  CLAIEQVFMAKNADSALKLGQARGVAIVVAMNLDLPVFEYAARQVKQTVVGSGAAEKSQV 122

Query: 127 HMMLKMLM 134
             M++ L+
Sbjct: 123 QHMVRTLL 130


>gi|212696230|ref|ZP_03304358.1| hypothetical protein ANHYDRO_00766 [Anaerococcus hydrogenalis DSM
           7454]
 gi|325846639|ref|ZP_08169554.1| crossover junction endodeoxyribonuclease RuvC [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
 gi|212676859|gb|EEB36466.1| hypothetical protein ANHYDRO_00766 [Anaerococcus hydrogenalis DSM
           7454]
 gi|325481397|gb|EGC84438.1| crossover junction endodeoxyribonuclease RuvC [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
          Length = 164

 Score =  101 bits (252), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 78/128 (60%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           ++GIDPG+   G+G+++V G+    + +G + +  +     RL  LY+ L+D+I+ ++P+
Sbjct: 3   VLGIDPGIAIMGYGVLEVNGNRYNVLENGVVTTSAKTKTPERLEILYKNLSDIIRQYKPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E++F N++    + +G AR I +L   +  +P+ EY P  IK+A+ G G  +KKQ+
Sbjct: 63  EFAIEELFFNQNVKTAITVGHARGIQVLCAQMNNLPIYEYTPLQIKQAITGFGRANKKQM 122

Query: 127 HMMLKMLM 134
              +  L+
Sbjct: 123 QETITTLL 130


>gi|308049718|ref|YP_003913284.1| crossover junction endodeoxyribonuclease RuvC [Ferrimonas balearica
           DSM 9799]
 gi|307631908|gb|ADN76210.1| crossover junction endodeoxyribonuclease RuvC [Ferrimonas balearica
           DSM 9799]
          Length = 173

 Score =  101 bits (252), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 63/152 (41%), Positives = 97/152 (63%), Gaps = 7/152 (4%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVR---QSLAFRLCQLYEGLTDVIKNW 63
           I+GIDPG R TG+G++   G    ++ SG    C+R     L  RL  +++G+++++K +
Sbjct: 4   ILGIDPGSRLTGYGVIRFCGRQFQYLGSG----CIRLPETDLPSRLKIIFDGVSELVKQF 59

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P+E AVE+VF+ ++A + LKLGQAR  AI++     + VSEY+P  +K+AV+G G   K
Sbjct: 60  EPDELAVERVFMGRNADSALKLGQARGAAIVAALNGGLTVSEYSPTQVKQAVVGTGGAKK 119

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHA 155
           +Q+  M+K L+        DAADALAIA+ HA
Sbjct: 120 EQVQHMVKHLLKLPGTPQADAADALAIAITHA 151


>gi|307130886|ref|YP_003882902.1| component of RuvABC resolvasome, endonuclease [Dickeya dadantii
           3937]
 gi|306528415|gb|ADM98345.1| component of RuvABC resolvasome, endonuclease [Dickeya dadantii
           3937]
          Length = 173

 Score =  101 bits (252), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 66/160 (41%), Positives = 98/160 (61%), Gaps = 2/160 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+GIV   G  + ++ SG I + V   L  RL  +Y G+++VI  ++P 
Sbjct: 4   ILGIDPGSRVTGYGIVRQQGRQISYLGSGCIRTAV-DDLPTRLKLIYAGVSEVITQFQPN 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ ++A + LKLGQAR  AI++     +PV EYA   +K+ V+G G  +K Q+
Sbjct: 63  YFAIEQVFMARNADSALKLGQARGAAIVAAVNQSLPVFEYAARQVKQTVVGTGAAEKSQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
             M+K L+        DAADALAIA+ H  H +  + +I+
Sbjct: 123 QHMVKTLLKLPASPQADAADALAIAITHC-HFSQNFSRIS 161


>gi|300775852|ref|ZP_07085712.1| crossover junction endoribonuclease subunit C [Chryseobacterium
           gleum ATCC 35910]
 gi|300505402|gb|EFK36540.1| crossover junction endoribonuclease subunit C [Chryseobacterium
           gleum ATCC 35910]
          Length = 184

 Score =  101 bits (252), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 57/157 (36%), Positives = 89/157 (56%), Gaps = 4/157 (2%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG    G+GI+ V    +  VS   ++     +   +L  ++E    +I  + P+
Sbjct: 7   ILGIDPGTTVMGFGIISVKKGKMELVSIHELILKKYPNHETKLKYIFERTLSLIDEFHPD 66

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E  F  K+  + LKLG+A+ +A+ +     IP++EY+P  IK A+ G G+  K+Q+
Sbjct: 67  EVALEAPFYGKNVQSMLKLGRAQGVAMAASLYRNIPITEYSPKKIKMAITGNGNASKEQV 126

Query: 127 HMMLKMLMPESFFKGK--DAADALAIAVCHAYHANSG 161
             ML+ L+    F  K  DA+D LA+AVCH  H NSG
Sbjct: 127 AGMLQNLLKLKEFPTKYLDASDGLAVAVCH--HFNSG 161


>gi|193212195|ref|YP_001998148.1| crossover junction endodeoxyribonuclease RuvC [Chlorobaculum parvum
           NCIB 8327]
 gi|238692617|sp|B3QLZ5|RUVC_CHLP8 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|193085672|gb|ACF10948.1| crossover junction endodeoxyribonuclease RuvC [Chlorobaculum parvum
           NCIB 8327]
          Length = 187

 Score =  101 bits (252), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 58/148 (39%), Positives = 81/148 (54%), Gaps = 1/148 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           ++G+DPG R+TG+G++  A   L  +  G I      +L  R+ QL  GL +VI N +PE
Sbjct: 3   VLGVDPGSRKTGYGVIAEAEGRLSVLGCGLIRPAASGTLHERIGQLCSGLEEVIANMKPE 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+E  FV ++  + L LGQ R   + +     +PV EYAP  IK AV G G   K+Q+
Sbjct: 63  AVALETAFVGRNVRSALILGQVRGAVLATVIKLGLPVREYAPREIKLAVTGTGAARKEQV 122

Query: 127 HMML-KMLMPESFFKGKDAADALAIAVC 153
             ML ++L  E   K  D  DAL IA C
Sbjct: 123 ASMLPRLLGLEEAPKPLDVTDALGIAYC 150


>gi|302338525|ref|YP_003803731.1| crossover junction endodeoxyribonuclease RuvC [Spirochaeta
           smaragdinae DSM 11293]
 gi|301635710|gb|ADK81137.1| crossover junction endodeoxyribonuclease RuvC [Spirochaeta
           smaragdinae DSM 11293]
          Length = 167

 Score =  101 bits (252), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 76/129 (58%)

Query: 6   RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           RI+G+DPG   TGWG+V+  G+    V  G I +  ++ + FRL  +Y+ +  +++ +RP
Sbjct: 3   RILGLDPGFAETGWGVVEAEGNRFRHVDHGAIRTKAKEQVGFRLSSIYDAVKSLVEQYRP 62

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
           E   +E+++  K+  + L + QAR + +L      I    Y+P  IK+ + GVG  DK+Q
Sbjct: 63  ECCGIEELYFAKNITSALPVAQARGVLLLVLEQHSIVTESYSPPLIKQTITGVGRADKRQ 122

Query: 126 IHMMLKMLM 134
           +  M+++L+
Sbjct: 123 VQEMVRLLL 131


>gi|262068025|ref|ZP_06027637.1| crossover junction endodeoxyribonuclease RuvC [Fusobacterium
           periodonticum ATCC 33693]
 gi|291378247|gb|EFE85765.1| crossover junction endodeoxyribonuclease RuvC [Fusobacterium
           periodonticum ATCC 33693]
          Length = 190

 Score =  101 bits (252), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 54/151 (35%), Positives = 82/151 (54%), Gaps = 1/151 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R+IGIDPG    G+GI+D   +    V  G I++    S   RL  +Y  L  ++K ++
Sbjct: 1   MRVIGIDPGTAIVGYGIIDYNKNKYSIVDYGVILTSKDLSNEERLEIVYNELDKILKKYK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           PE  A+E +F  K+    + + QAR + +L+     IP+S Y P  +K  + G G  +KK
Sbjct: 61  PEFMAIEDLFYFKNNKTVISVAQARGVILLAGKQNNIPMSNYTPLQVKIGITGYGKAEKK 120

Query: 125 QIHMML-KMLMPESFFKGKDAADALAIAVCH 154
           Q+ +M+ K L      K  DAADALAI + H
Sbjct: 121 QVQLMVQKFLGLSEIPKPDDAADALAICITH 151


>gi|83816429|ref|YP_446766.1| Holliday junction resolvase [Salinibacter ruber DSM 13855]
 gi|123726125|sp|Q2RZ65|RUVC_SALRD RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|83757823|gb|ABC45936.1| crossover junction endodeoxyribonuclease RuvC [Salinibacter ruber
           DSM 13855]
          Length = 179

 Score =  101 bits (251), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 60/151 (39%), Positives = 91/151 (60%), Gaps = 3/151 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+G+DPG R TG+G+VD +G +   V++ TI          RL Q+Y+ L DVI    P+
Sbjct: 3   ILGVDPGSRATGYGLVDPSGGDEHLVAADTIRLADTDDHPTRLKQIYDALVDVIDAHGPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E AVE     ++  + LKLG+A+A A+++     +PV++Y P  +KK+V G G+  KKQ+
Sbjct: 63  EFAVEMPVYGQNPQSMLKLGRAQAAAMMAALNRDLPVAQYTPKEVKKSVTGNGNASKKQV 122

Query: 127 HMMLKMLMP--ESFFKGKDAADALAIAVCHA 155
             M++ ++   E  F   D ADALAIA+CH 
Sbjct: 123 GFMIESILSAREQTF-AHDTADALAIALCHG 152


>gi|317491786|ref|ZP_07950221.1| crossover junction endodeoxyribonuclease RuvC [Enterobacteriaceae
           bacterium 9_2_54FAA]
 gi|316920220|gb|EFV41544.1| crossover junction endodeoxyribonuclease RuvC [Enterobacteriaceae
           bacterium 9_2_54FAA]
          Length = 173

 Score =  101 bits (251), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 64/153 (41%), Positives = 96/153 (62%), Gaps = 7/153 (4%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQS---LAFRLCQLYEGLTDVIKNW 63
           I+GIDPG R TG+G++   G  L ++ SG    C+R S   L  RL  +Y G++++I  +
Sbjct: 4   ILGIDPGSRITGYGVIRQVGRKLEYLGSG----CIRTSVDDLPTRLKLVYAGVSEIITQF 59

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +P+  A+EQVF+ K+A + LKLGQAR  AI++     +PV EYA   IK+ V+G G  +K
Sbjct: 60  QPDIFAIEQVFMAKNADSALKLGQARGAAIVAAVNVDLPVFEYAARQIKQTVVGTGAAEK 119

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
            Q+  M++ L+  S     DAADALA+A+ H +
Sbjct: 120 AQVQHMVRSLLKLSANPQADAADALAVAITHCH 152


>gi|251789859|ref|YP_003004580.1| Holliday junction resolvase [Dickeya zeae Ech1591]
 gi|247538480|gb|ACT07101.1| crossover junction endodeoxyribonuclease RuvC [Dickeya zeae
           Ech1591]
          Length = 173

 Score =  101 bits (251), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 65/160 (40%), Positives = 99/160 (61%), Gaps = 2/160 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+GIV   G  + ++ SG I + V   L  RL  +Y G++++I  ++P+
Sbjct: 4   ILGIDPGSRVTGYGIVRQQGRQISYLGSGCIRTAV-DDLPTRLKLIYAGVSEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ ++A + LKLGQAR  AI++     +PV EYA   +K+ V+G G  +K Q+
Sbjct: 63  FFAIEQVFMARNADSALKLGQARGAAIVAAVNQSLPVFEYAARQVKQTVVGTGAAEKSQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
             M+K L+        DAADALAIA+ H  H +  + +I+
Sbjct: 123 QHMVKTLLKLPASPQADAADALAIAITHC-HFSQNFSRIS 161


>gi|91218360|ref|ZP_01255304.1| Holliday junction resolvase [Psychroflexus torquis ATCC 700755]
 gi|91183498|gb|EAS69897.1| Holliday junction resolvase [Psychroflexus torquis ATCC 700755]
          Length = 184

 Score =  101 bits (251), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 89/154 (57%), Gaps = 1/154 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG    G+G++++  + + F+    ++         +L  +++   D+I  + P+
Sbjct: 7   ILGIDPGTTIMGFGVIEIVNNKMKFIQLNELMLKKYDDPYTKLKLIFDRTIDLIDTFHPD 66

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E  F  K+  + LKLG+A+ +A+ +    ++P++EY P  IK A+ G G+  K+Q+
Sbjct: 67  EIAIEAPFFGKNVQSMLKLGRAQGVAMAAGLSRQVPITEYLPKKIKMAITGNGNASKEQV 126

Query: 127 HMML-KMLMPESFFKGKDAADALAIAVCHAYHAN 159
             ML +ML  +   K  D+ D LA AVCH Y++N
Sbjct: 127 AKMLQQMLKIKELPKNLDSTDGLAAAVCHFYNSN 160


>gi|163787294|ref|ZP_02181741.1| Holliday junction resolvase [Flavobacteriales bacterium ALC-1]
 gi|159877182|gb|EDP71239.1| Holliday junction resolvase [Flavobacteriales bacterium ALC-1]
          Length = 184

 Score =  101 bits (251), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 54/158 (34%), Positives = 88/158 (55%), Gaps = 1/158 (0%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M K   I+GIDPG    G+G++ V G  + F+    ++         +L  ++E   ++I
Sbjct: 1   MSKEKIILGIDPGTTIMGFGLIKVVGKKMEFMQLNELMLKKYDDHYLKLKLIFERTVELI 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             + P+E A+E  F  K+  + LKLG+A+ +A+ +     +P++EYAP  IK A+ G G+
Sbjct: 61  DTYHPDEIAIEAPFFGKNVQSMLKLGRAQGVAMAAGLSREVPITEYAPKKIKMAITGNGN 120

Query: 121 GDKKQIHMMLK-MLMPESFFKGKDAADALAIAVCHAYH 157
             K+Q+  ML+ ML  +   K  D+ D LA AVCH Y+
Sbjct: 121 ASKEQVAKMLQGMLGLKELPKNLDSMDGLAAAVCHFYN 158


>gi|237740695|ref|ZP_04571176.1| crossover junction endodeoxyribonuclease ruvC [Fusobacterium sp.
           2_1_31]
 gi|229422712|gb|EEO37759.1| crossover junction endodeoxyribonuclease ruvC [Fusobacterium sp.
           2_1_31]
          Length = 190

 Score =  101 bits (251), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 54/151 (35%), Positives = 82/151 (54%), Gaps = 1/151 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R+IGIDPG    G+GI+D   +    V  G I++    S   RL  +Y  L  ++K ++
Sbjct: 1   MRVIGIDPGTAIVGYGIIDYNKNKYSIVDYGVILTSKDLSNEERLEIVYNELDKILKKYK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           PE  A+E +F  K+    + + QAR + +L+     IP+S Y P  +K  + G G  +KK
Sbjct: 61  PEFMAIEDLFYFKNNKTVISVAQARGVILLAGKQNNIPMSSYTPLQVKIGITGYGKAEKK 120

Query: 125 QIHMML-KMLMPESFFKGKDAADALAIAVCH 154
           Q+ +M+ K L      K  DAADALAI + H
Sbjct: 121 QVQLMVQKFLGLSEIPKPDDAADALAICITH 151


>gi|119504257|ref|ZP_01626337.1| Crossover junction endodeoxyribonuclease RuvC [marine gamma
           proteobacterium HTCC2080]
 gi|119459765|gb|EAW40860.1| Crossover junction endodeoxyribonuclease RuvC [marine gamma
           proteobacterium HTCC2080]
          Length = 172

 Score =  101 bits (251), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 63/154 (40%), Positives = 91/154 (59%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R+TG+G++   G    +V+SG I   V Q+L  RL  L+  L  +I  + P+
Sbjct: 4   ILGIDPGSRKTGFGVIRTEGKAAVYVTSGIIRLPVDQALGPRLGVLFSSLNSIIDEFNPD 63

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E+VFV ++  A LKLG AR  A+       + V EYA   IK AV+G G   K+Q+
Sbjct: 64  ELAIEEVFVARNPGAALKLGHARGAAMAVCVHRGMHVYEYAARQIKLAVVGTGAASKEQV 123

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
             M+K+L+       +DAAD LA A+CH + + S
Sbjct: 124 QHMVKVLLKLPAAPKEDAADGLAAALCHLHSSQS 157


>gi|304383181|ref|ZP_07365654.1| crossover junction endoribonuclease subunit C [Prevotella marshii
           DSM 16973]
 gi|304335652|gb|EFM01909.1| crossover junction endoribonuclease subunit C [Prevotella marshii
           DSM 16973]
          Length = 187

 Score =  101 bits (251), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 58/158 (36%), Positives = 89/158 (56%), Gaps = 4/158 (2%)

Query: 1   MRKSIRII-GIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDV 59
           M K+ R+I GIDPG    G+G++ +  +    +S G I          RL +++E +T +
Sbjct: 1   MEKAERVILGIDPGTNVMGYGVIGITNNKAHMISMGVIDMRKMADPYLRLGKIFERVTGI 60

Query: 60  IKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVG 119
           I+++ P+E A+E  F  K+  + LKLG+A+ +AI +     IP+ EYAP  IK A+ G G
Sbjct: 61  IESFLPDELAIEAPFFGKNVQSMLKLGRAQGVAIAAAIRRDIPIHEYAPLKIKVAITGQG 120

Query: 120 HGDKKQIHMMLKMLM---PESFFKGKDAADALAIAVCH 154
              K+Q+  ML+ L+    E   +  DA DALA A CH
Sbjct: 121 QASKQQVADMLRRLLNLHKEELPRFMDATDALAAAYCH 158


>gi|157371018|ref|YP_001479007.1| Holliday junction resolvase [Serratia proteamaculans 568]
 gi|167012682|sp|A8GFI9|RUVC_SERP5 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|157322782|gb|ABV41879.1| crossover junction endodeoxyribonuclease RuvC [Serratia
           proteamaculans 568]
          Length = 173

 Score =  101 bits (251), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 51/131 (38%), Positives = 83/131 (63%), Gaps = 1/131 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L +V+SG I + V   +  RL  +Y G++++I  ++P+
Sbjct: 4   ILGIDPGSRVTGYGLIRQQGRQLTYVASGCIRTVV-DDMPTRLKLIYAGVSEIITQFKPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+  + LKLGQAR +AI++     + V EYA   +K+ V+G G  +K Q+
Sbjct: 63  FFAIEQVFMAKNPDSALKLGQARGVAIVAAVNQDLEVFEYAARQVKQTVVGTGAAEKAQV 122

Query: 127 HMMLKMLMPES 137
             M++ L+  S
Sbjct: 123 QHMVRSLLKLS 133


>gi|187611417|sp|A6VQA5|RUVC_ACTSZ RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
          Length = 190

 Score =  101 bits (251), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 62/150 (41%), Positives = 95/150 (63%), Gaps = 1/150 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I +     L  RL ++Y G+T++I  ++P+
Sbjct: 4   ILGIDPGSRVTGYGVIRQTGRTLEYLGSGVIRTQA-DDLPTRLKRIYAGVTEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+E+VF+ K+  + LKLGQAR  AI++     +PV EYA   +K+ V+G+G  DK Q+
Sbjct: 63  MFAIEEVFLAKNPNSALKLGQARGTAIVAAVNRDLPVFEYAARLVKQTVVGIGSADKSQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAY 156
             M+  ++  S     DAADALAIA+ HA+
Sbjct: 123 QDMVARILKLSDKPQADAADALAIAITHAH 152


>gi|152979458|ref|YP_001345087.1| Holliday junction resolvase [Actinobacillus succinogenes 130Z]
 gi|150841181|gb|ABR75152.1| crossover junction endodeoxyribonuclease RuvC [Actinobacillus
           succinogenes 130Z]
          Length = 205

 Score =  100 bits (250), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 62/150 (41%), Positives = 95/150 (63%), Gaps = 1/150 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I +     L  RL ++Y G+T++I  ++P+
Sbjct: 19  ILGIDPGSRVTGYGVIRQTGRTLEYLGSGVIRTQA-DDLPTRLKRIYAGVTEIITQFQPD 77

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+E+VF+ K+  + LKLGQAR  AI++     +PV EYA   +K+ V+G+G  DK Q+
Sbjct: 78  MFAIEEVFLAKNPNSALKLGQARGTAIVAAVNRDLPVFEYAARLVKQTVVGIGSADKSQV 137

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAY 156
             M+  ++  S     DAADALAIA+ HA+
Sbjct: 138 QDMVARILKLSDKPQADAADALAIAITHAH 167


>gi|293395807|ref|ZP_06640089.1| crossover junction endoribonuclease subunit C [Serratia odorifera
           DSM 4582]
 gi|291421744|gb|EFE94991.1| crossover junction endoribonuclease subunit C [Serratia odorifera
           DSM 4582]
          Length = 173

 Score =  100 bits (250), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 50/131 (38%), Positives = 83/131 (63%), Gaps = 1/131 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L +++SG I + V   +  RL  +Y G++++I  ++P+
Sbjct: 4   ILGIDPGSRITGYGLIRQQGRQLSYIASGCIRTVV-DDMPTRLKLIYAGVSEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+  + LKLGQAR +AI++     + V EYA   +K+ V+G G  +K Q+
Sbjct: 63  FFAIEQVFMAKNPDSALKLGQARGVAIVAAVNQNLEVFEYAARQVKQTVVGTGAAEKSQV 122

Query: 127 HMMLKMLMPES 137
             M++ L+  S
Sbjct: 123 QHMVRSLLKLS 133


>gi|332305757|ref|YP_004433608.1| crossover junction endodeoxyribonuclease RuvC [Glaciecola
           agarilytica 4H-3-7+YE-5]
 gi|332173086|gb|AEE22340.1| crossover junction endodeoxyribonuclease RuvC [Glaciecola
           agarilytica 4H-3-7+YE-5]
          Length = 173

 Score =  100 bits (250), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 64/165 (38%), Positives = 104/165 (63%), Gaps = 8/165 (4%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVR---QSLAFRLCQLYEGLTDVIKNW 63
           I+GIDPG R TG+G++  AG    ++ SG    C+R    +LA RL Q+++G++ +I  +
Sbjct: 4   ILGIDPGSRITGYGVIQRAGRQQQYLGSG----CIRMQGDALAPRLQQIFDGVSQLILQY 59

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +P+  A+EQVF+ K+  + LKLGQAR  AI++ +   + V+EY+   IK++V+G G+  K
Sbjct: 60  KPDMFAIEQVFMAKNPDSALKLGQARGAAIVAASNQGLDVAEYSARQIKQSVVGNGNAQK 119

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
            Q+  M+  ++        DAADALA+A+CH+ H+     K+A Q
Sbjct: 120 TQVQHMVTFILKLPGTPQADAADALAVALCHS-HSEENLIKMAGQ 163


>gi|3860687|emb|CAA14588.1| CROSSOVER JUNCTION ENDODEOXYRIBONUCLEASE RUVC (ruvC) [Rickettsia
           prowazekii]
          Length = 169

 Score =  100 bits (250), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 54/146 (36%), Positives = 82/146 (56%), Gaps = 1/146 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           ++GIDP L + GW +V      L +++SGTI +  +  +  RL  +   L  VI  ++P 
Sbjct: 15  VLGIDPALGKLGWAVVAKESTKLHYLASGTIKTHSKDEIHNRLAFINSILEKVILEYQPN 74

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
            AA+E+ FVN + V +LKLG AR   +       + + E+ PNT+KK V G GH  K+QI
Sbjct: 75  IAAIEETFVNTNNVTSLKLGYARGAIMSLIGRYNLDMQEFKPNTVKKTVTGYGHAGKEQI 134

Query: 127 HMMLKMLMPES-FFKGKDAADALAIA 151
             M+K L+  +      D ADA+A+A
Sbjct: 135 LYMIKHLISGTDLITNSDEADAVALA 160


>gi|238754859|ref|ZP_04616209.1| Crossover junction endodeoxyribonuclease ruvC [Yersinia ruckeri
           ATCC 29473]
 gi|238706870|gb|EEP99237.1| Crossover junction endodeoxyribonuclease ruvC [Yersinia ruckeri
           ATCC 29473]
          Length = 177

 Score =  100 bits (250), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 62/150 (41%), Positives = 94/150 (62%), Gaps = 1/150 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           ++GIDPG R TG+G++   G  L ++ SG I + V   +  RL  +Y G+T++I  + P+
Sbjct: 8   VLGIDPGSRVTGYGVIRQEGRQLTYLGSGCIRTVV-DDMPTRLKLIYAGVTEIITQFHPD 66

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR  AI++     +PVSEYA   +K+ V+G G  +K Q+
Sbjct: 67  FFAIEQVFMAKNADSALKLGQARGAAIVAAVNLDLPVSEYAARQVKQTVVGTGAAEKSQV 126

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAY 156
             M++ L+        DAADALAIA+ H +
Sbjct: 127 QHMVRSLLKLPANPQADAADALAIAITHCH 156


>gi|86132383|ref|ZP_01050977.1| crossover junction endodeoxyribonuclease RuvC [Dokdonia donghaensis
           MED134]
 gi|85816944|gb|EAQ38128.1| crossover junction endodeoxyribonuclease RuvC [Dokdonia donghaensis
           MED134]
          Length = 184

 Score =  100 bits (250), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 57/161 (35%), Positives = 89/161 (55%), Gaps = 3/161 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG    G+G++ V G  + F+    ++         +L  ++E    +I  + P+
Sbjct: 7   ILGIDPGTTIMGFGLIKVVGKKMEFMQLNELLLQKYNDPYVKLKLIFERTIHLIDTYHPD 66

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E  F  K+  + LKLG+A+ +A+ +     IP++EY P  IK AV G G+  K+Q+
Sbjct: 67  EIAIEAPFFGKNVQSMLKLGRAQGVAMAAGLSREIPITEYLPKKIKMAVTGNGNASKEQV 126

Query: 127 HMMLKMLMP-ESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
             ML+ L+  ++  K  DA D LA AVCH Y  NSG  +I 
Sbjct: 127 ARMLQSLLKLKTLPKNLDATDGLAAAVCHFY--NSGKVEIG 165


>gi|270262224|ref|ZP_06190496.1| crossover junction endodeoxyribonuclease ruvC [Serratia odorifera
           4Rx13]
 gi|270044100|gb|EFA17192.1| crossover junction endodeoxyribonuclease ruvC [Serratia odorifera
           4Rx13]
          Length = 173

 Score =  100 bits (249), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 50/131 (38%), Positives = 83/131 (63%), Gaps = 1/131 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L +++SG I + V   +  RL  +Y G++++I  ++P+
Sbjct: 4   ILGIDPGSRVTGYGLIRQQGRQLSYIASGCIRTVV-DDMPTRLKLIYAGVSEIITQFKPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+  + LKLGQAR +AI++     + V EYA   +K+ V+G G  +K Q+
Sbjct: 63  FFAIEQVFMAKNPDSALKLGQARGVAIVAAVNQDLEVFEYAARQVKQTVVGTGAAEKAQV 122

Query: 127 HMMLKMLMPES 137
             M++ L+  S
Sbjct: 123 QHMVRSLLKLS 133


>gi|260893479|ref|YP_003239576.1| crossover junction endodeoxyribonuclease RuvC [Ammonifex degensii
           KC4]
 gi|260865620|gb|ACX52726.1| crossover junction endodeoxyribonuclease RuvC [Ammonifex degensii
           KC4]
          Length = 160

 Score =  100 bits (249), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 51/152 (33%), Positives = 86/152 (56%), Gaps = 7/152 (4%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           ++G+DPG  R G+G+V   G +L  ++ G + +   Q L  RL  LY  L ++++ ++P 
Sbjct: 3   VMGVDPGAERLGYGLVREDGQHLKAIAYGCLHTPADQPLPLRLKSLYRALKELLQKYQPN 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             AVE++F  ++    + +G+   + +L+ A +  PV  Y P  +K+AV G G   K+Q+
Sbjct: 63  ALAVEELFWGQNVRTAMMVGKVAGVVLLAAAESNCPVFSYPPQVVKQAVTGYGRATKRQV 122

Query: 127 HMMLKMLM----PESFFKGKDAADALAIAVCH 154
             M+K L+    P S     D ADALA+A+CH
Sbjct: 123 QYMVKELLGLPAPPS---PDDTADALALAICH 151


>gi|161729090|ref|NP_220511.2| Holliday junction resolvase [Rickettsia prowazekii str. Madrid E]
 gi|6685957|sp|Q9ZE29|RUVC_RICPR RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|292571712|gb|ADE29627.1| Crossover junction endodeoxyribonuclease RuvC [Rickettsia
           prowazekii Rp22]
          Length = 157

 Score =  100 bits (249), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 54/146 (36%), Positives = 82/146 (56%), Gaps = 1/146 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           ++GIDP L + GW +V      L +++SGTI +  +  +  RL  +   L  VI  ++P 
Sbjct: 3   VLGIDPALGKLGWAVVAKESTKLHYLASGTIKTHSKDEIHNRLAFINSILEKVILEYQPN 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
            AA+E+ FVN + V +LKLG AR   +       + + E+ PNT+KK V G GH  K+QI
Sbjct: 63  IAAIEETFVNTNNVTSLKLGYARGAIMSLIGRYNLDMQEFKPNTVKKTVTGYGHAGKEQI 122

Query: 127 HMMLKMLMPES-FFKGKDAADALAIA 151
             M+K L+  +      D ADA+A+A
Sbjct: 123 LYMIKHLISGTDLITNSDEADAVALA 148


>gi|15892082|ref|NP_359796.1| Holliday junction resolvase [Rickettsia conorii str. Malish 7]
 gi|20140121|sp|Q92JA8|RUVC_RICCN RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|15619204|gb|AAL02697.1| crossover junction endodeoxyribonuclease RuvC [Rickettsia conorii
           str. Malish 7]
          Length = 157

 Score =  100 bits (249), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 53/146 (36%), Positives = 82/146 (56%), Gaps = 1/146 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDP L   GW +V      L +++SG I +  + ++  RL  +   L  VI  ++P 
Sbjct: 3   ILGIDPALGSLGWAVVAKETAQLKYLASGIIRTNSKDAIHHRLAFINSTLEKVILEYQPN 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+E+ FVN ++V +LKLG AR   +       + + E+ PNT+KK V G GH +K Q+
Sbjct: 63  MVAIEETFVNTNSVTSLKLGYARGAIMSLIGRYNLDMREFKPNTVKKTVTGYGHAEKDQM 122

Query: 127 HMMLKMLMP-ESFFKGKDAADALAIA 151
             M+K+L+   +     D ADA+AIA
Sbjct: 123 LHMIKLLLSGTALITNSDEADAVAIA 148


>gi|238751589|ref|ZP_04613079.1| Crossover junction endodeoxyribonuclease ruvC [Yersinia rohdei ATCC
           43380]
 gi|238710151|gb|EEQ02379.1| Crossover junction endodeoxyribonuclease ruvC [Yersinia rohdei ATCC
           43380]
          Length = 173

 Score =  100 bits (249), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 61/150 (40%), Positives = 94/150 (62%), Gaps = 1/150 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           ++GIDPG R TG+G++   G  L ++ SG I + V   +  RL  +Y G+T++I  ++P+
Sbjct: 4   VLGIDPGSRVTGYGVIHQQGRQLTYLGSGCIRTVV-DDMPTRLKLIYAGVTEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+  + LKLGQAR  AI++     +PVSEYA   +K+ V+G G  +K Q+
Sbjct: 63  FFAIEQVFMAKNPDSALKLGQARGAAIVAAVNLNLPVSEYAARQVKQTVVGTGAAEKSQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAY 156
             M++ L+        DAADALAIA+ H +
Sbjct: 123 QHMVRSLLKLPANPQADAADALAIAITHCH 152


>gi|299137113|ref|ZP_07030296.1| crossover junction endodeoxyribonuclease RuvC [Acidobacterium sp.
           MP5ACTX8]
 gi|298601628|gb|EFI57783.1| crossover junction endodeoxyribonuclease RuvC [Acidobacterium sp.
           MP5ACTX8]
          Length = 167

 Score =  100 bits (249), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 63/162 (38%), Positives = 101/162 (62%), Gaps = 5/162 (3%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGD----NLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           +R+ G+D G   TG+G+V+V        L ++ +G +    + S A RL Q+Y  L  ++
Sbjct: 1   MRVFGVDCGTEFTGYGVVEVDDSARTPKLRYLCAGAVKLSKKDSTAMRLAQVYSELIALM 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
           + W+PE  A+E+VF + +A + LKLGQ R +A+L+ A   + V+EYAP +IK +V+G G 
Sbjct: 61  QLWQPEMVAIEEVFFSANAKSALKLGQVRGVAMLAAANCGLTVAEYAPLSIKSSVVGYGL 120

Query: 121 GDKKQIHMML-KMLMPESFFKGKDAADALAIAVCHAYHANSG 161
             K+Q+  M+ ++L  +   K  DAADALAIA+CH +HA + 
Sbjct: 121 AAKEQVQFMVARLLELDEAPKPADAADALAIAICHIHHAQTA 162


>gi|329942437|ref|ZP_08291247.1| crossover junction endodeoxyribonuclease RuvC [Chlamydophila
           psittaci Cal10]
 gi|332287078|ref|YP_004421979.1| Holliday junction resolvase [Chlamydophila psittaci 6BC]
 gi|313847674|emb|CBY16662.1| putative crossover junction endodeoxyribonuclease RuvC
           [Chlamydophila psittaci RD1]
 gi|325507012|gb|ADZ18650.1| Holliday junction resolvase [Chlamydophila psittaci 6BC]
 gi|328815347|gb|EGF85335.1| crossover junction endodeoxyribonuclease RuvC [Chlamydophila
           psittaci Cal10]
          Length = 168

 Score =  100 bits (249), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 56/154 (36%), Positives = 90/154 (58%), Gaps = 4/154 (2%)

Query: 7   IIGIDPGLRRTGWGIVDVAGD-NLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           I+GIDPG   +G+ I+ V     +   S G I    + SL  R  QL++ L+ V+ N  P
Sbjct: 5   IMGIDPGTLVSGYAIILVEQRYKIRAHSYGAIRLSSKDSLTQRYKQLFQTLSGVLDNVTP 64

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
           +   +E  +V+K+  + +KLG  R + +L+ AL  IPV EY PN  K+AV+G G+  K+Q
Sbjct: 65  DAVVLETQYVHKNPQSAIKLGMGRGVLVLAAALRDIPVFEYTPNVAKRAVVGKGNASKQQ 124

Query: 126 IHMMLKMLM--PESFFKG-KDAADALAIAVCHAY 156
           + +M+  ++  P+      +D ADA A+A+CHA+
Sbjct: 125 VQLMVSKILNIPDVLNSNCEDIADAFALAICHAH 158


>gi|328914312|gb|AEB55145.1| crossover junction endodeoxyribonuclease RuvC [Chlamydophila
           psittaci 6BC]
          Length = 165

 Score =  100 bits (249), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 56/154 (36%), Positives = 90/154 (58%), Gaps = 4/154 (2%)

Query: 7   IIGIDPGLRRTGWGIVDVAGD-NLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           I+GIDPG   +G+ I+ V     +   S G I    + SL  R  QL++ L+ V+ N  P
Sbjct: 2   IMGIDPGTLVSGYAIILVEQRYKIRAHSYGAIRLSSKDSLTQRYKQLFQTLSGVLDNVTP 61

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
           +   +E  +V+K+  + +KLG  R + +L+ AL  IPV EY PN  K+AV+G G+  K+Q
Sbjct: 62  DAVVLETQYVHKNPQSAIKLGMGRGVLVLAAALRDIPVFEYTPNVAKRAVVGKGNASKQQ 121

Query: 126 IHMMLKMLM--PESFFKG-KDAADALAIAVCHAY 156
           + +M+  ++  P+      +D ADA A+A+CHA+
Sbjct: 122 VQLMVSKILNIPDVLNSNCEDIADAFALAICHAH 155


>gi|238756968|ref|ZP_04618156.1| Crossover junction endodeoxyribonuclease ruvC [Yersinia aldovae
           ATCC 35236]
 gi|238704798|gb|EEP97327.1| Crossover junction endodeoxyribonuclease ruvC [Yersinia aldovae
           ATCC 35236]
          Length = 198

 Score =  100 bits (249), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 62/150 (41%), Positives = 94/150 (62%), Gaps = 1/150 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I + V   +  RL  +Y G+T++I  ++P+
Sbjct: 29  ILGIDPGSRVTGYGVIRQQGRQLIYLGSGCIRTVV-DDMPTRLKLIYAGVTEIITQFQPD 87

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+  + LKLGQAR  AI++     +PVSEYA   +K+ V+G G  +K Q+
Sbjct: 88  FFAIEQVFMAKNPDSALKLGQARGAAIVAAVNLNLPVSEYAARQVKQTVVGTGAAEKSQV 147

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAY 156
             M++ L+        DAADALAIA+ H +
Sbjct: 148 QHMVRSLLKLPANPQADAADALAIAITHCH 177


>gi|298372975|ref|ZP_06982965.1| crossover junction endodeoxyribonuclease RuvC [Bacteroidetes oral
           taxon 274 str. F0058]
 gi|298275879|gb|EFI17430.1| crossover junction endodeoxyribonuclease RuvC [Bacteroidetes oral
           taxon 274 str. F0058]
          Length = 190

 Score =  100 bits (249), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 57/158 (36%), Positives = 86/158 (54%), Gaps = 3/158 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG    G+GI+ V G  + FV+ G I     +     L ++ E +T +++ + P+
Sbjct: 8   ILGIDPGTTVMGYGILRVVGKKVEFVTLGIINLRAIKDHYLTLRKISEEVTKLVETYLPD 67

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E  F  K+  + LKLG+A+ +AI       IP++EYAP  IK A+ G G   K+Q+
Sbjct: 68  ELAIEAPFFEKNVQSMLKLGRAQGVAITVAITHDIPIAEYAPLKIKMAITGQGRASKEQV 127

Query: 127 HMMLKMLM---PESFFKGKDAADALAIAVCHAYHANSG 161
             ML  ++   P S  K  DA D LA A CH    ++ 
Sbjct: 128 AAMLCKILKISPSSLPKELDATDGLAAAYCHYLQTSTA 165


>gi|260887322|ref|ZP_05898585.1| crossover junction endodeoxyribonuclease RuvC [Selenomonas
           sputigena ATCC 35185]
 gi|330838925|ref|YP_004413505.1| crossover junction endodeoxyribonuclease RuvC [Selenomonas
           sputigena ATCC 35185]
 gi|260862958|gb|EEX77458.1| crossover junction endodeoxyribonuclease RuvC [Selenomonas
           sputigena ATCC 35185]
 gi|329746689|gb|AEC00046.1| crossover junction endodeoxyribonuclease RuvC [Selenomonas
           sputigena ATCC 35185]
          Length = 164

 Score =  100 bits (249), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 53/158 (33%), Positives = 90/158 (56%), Gaps = 1/158 (0%)

Query: 8   IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEE 67
           +GIDPG    G+G V   G  L   + G + +  +  +  RL +LY+GL  +IK ++P+ 
Sbjct: 4   LGIDPGTAICGFGFVSSEGSRLVPHAYGALTTSPKARMEDRLMKLYDGLDALIKEYKPDV 63

Query: 68  AAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ-I 126
             +EQ+F N++    + +GQAR + +L+ A   + ++E+ P  +K+AV G G   K+Q I
Sbjct: 64  MGIEQLFFNRNVTTAIPVGQARGVVLLAAAKNGLEIAEHTPLQVKQAVTGYGKARKEQVI 123

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYK 164
           +M+ K+L      K  D ADALA+A+C  +   S  ++
Sbjct: 124 YMVSKLLHLAKPPKPDDVADALAVAICTTHCMASAAWR 161


>gi|291165808|gb|EFE27856.1| crossover junction endodeoxyribonuclease RuvC [Filifactor alocis
           ATCC 35896]
          Length = 163

 Score =  100 bits (249), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 52/151 (34%), Positives = 86/151 (56%), Gaps = 1/151 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           ++GIDPG    G+GI+D  G +   +  G+I +  ++    R+ ++Y+GL  +I+ +  E
Sbjct: 3   VLGIDPGYAIVGYGILDYNGTSFRVIDYGSIETDAKEPFVDRIQRIYKGLCFLIEKYHIE 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E++F  K+A   + + QAR + +L+     IPV EY P  +K+ + G G   K+Q+
Sbjct: 63  EMAIEELFFFKNAKTVIDVAQARGVMLLAAKEHNIPVYEYTPLQVKQGICGYGKAPKEQV 122

Query: 127 HMMLK-MLMPESFFKGKDAADALAIAVCHAY 156
             M+K  L  +   K  D ADALAIA  H +
Sbjct: 123 QQMVKTTLRLKEVPKPDDTADALAIATNHCH 153


>gi|238788521|ref|ZP_04632314.1| Crossover junction endodeoxyribonuclease ruvC [Yersinia
           frederiksenii ATCC 33641]
 gi|238723434|gb|EEQ15081.1| Crossover junction endodeoxyribonuclease ruvC [Yersinia
           frederiksenii ATCC 33641]
          Length = 173

 Score =  100 bits (249), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 61/150 (40%), Positives = 94/150 (62%), Gaps = 1/150 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           ++GIDPG R TG+G++   G  L ++ SG I + V   +  RL  +Y G+T++I  ++P+
Sbjct: 4   VLGIDPGSRVTGYGVIRQQGRQLTYLGSGCIRTVV-DDMPTRLKLIYAGVTEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+  + LKLGQAR  AI++     +PVSEYA   +K+ V+G G  +K Q+
Sbjct: 63  FFAIEQVFMAKNPDSALKLGQARGAAIVAAVNLNLPVSEYAARQVKQTVVGTGAAEKSQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAY 156
             M++ L+        DAADALAIA+ H +
Sbjct: 123 QHMVRSLLKLPANPQADAADALAIAITHCH 152


>gi|238786429|ref|ZP_04630349.1| Crossover junction endodeoxyribonuclease ruvC [Yersinia bercovieri
           ATCC 43970]
 gi|238712663|gb|EEQ04755.1| Crossover junction endodeoxyribonuclease ruvC [Yersinia bercovieri
           ATCC 43970]
          Length = 173

 Score =  100 bits (249), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 61/150 (40%), Positives = 94/150 (62%), Gaps = 1/150 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           ++GIDPG R TG+G++   G  L ++ SG I + V   +  RL  +Y G+T++I  ++P+
Sbjct: 4   VLGIDPGSRVTGYGVIRQEGRQLTYLGSGCIRTVV-DDMPTRLKLIYAGVTEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+  + LKLGQAR  AI++     +PVSEYA   +K+ V+G G  +K Q+
Sbjct: 63  FFAIEQVFMAKNPDSALKLGQARGAAIVAAVNLNLPVSEYAARQVKQTVVGTGAAEKSQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAY 156
             M++ L+        DAADALAIA+ H +
Sbjct: 123 QHMVRSLLKLPANPQADAADALAIAITHCH 152


>gi|88608702|ref|YP_506819.1| crossover junction endodeoxyribonuclease RuvC [Neorickettsia
           sennetsu str. Miyayama]
 gi|123763686|sp|Q2GCH7|RUVC_NEOSM RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|88600871|gb|ABD46339.1| crossover junction endodeoxyribonuclease RuvC [Neorickettsia
           sennetsu str. Miyayama]
          Length = 166

 Score =  100 bits (249), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 55/149 (36%), Positives = 88/149 (59%), Gaps = 7/149 (4%)

Query: 8   IGIDPGLRRTGWGIVDVAGDNLC---FVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +G+DPGL RTGW +V+   D LC   ++ SG + +  + SL+ RL +++ G++DVI+   
Sbjct: 6   LGVDPGLLRTGWAVVEY--DGLCNVRYIDSGIVKTASQGSLSARLEKIHRGISDVIEKVN 63

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P  A +E+VFVN +  ++L L   R   IL+ AL  + + E+AP+ +KK + G G   K 
Sbjct: 64  PSVAVLEKVFVNNNPYSSLNLAYCRGALILTLALKGLFIVEFAPSVLKKRITGNGRATKA 123

Query: 125 QIHMMLKML--MPESFFKGKDAADALAIA 151
           Q+  M++ L  +     K  D  DALA+A
Sbjct: 124 QVKYMVEQLLGLDPCLSKYSDLYDALALA 152


>gi|154149660|ref|YP_001403278.1| Holliday junction resolvase [Candidatus Methanoregula boonei 6A8]
 gi|153998212|gb|ABS54635.1| crossover junction endodeoxyribonuclease RuvC [Methanoregula boonei
           6A8]
          Length = 156

 Score =  100 bits (249), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 51/151 (33%), Positives = 85/151 (56%), Gaps = 1/151 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           +IGIDPGL R G+G++         +  G + +        RL ++  GL  + + + P+
Sbjct: 3   VIGIDPGLARLGYGVIRAERGTAVPLCYGCLETRAGARPGERLLEISRGLASLFERYPPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             AVE++F +K+  + + + + R I +L+     IPV+EY PN +K+AV G G  DK Q+
Sbjct: 63  ALAVEKLFFSKNVTSAMGVSEVRGIVLLAAEERGIPVTEYTPNQVKQAVTGSGRADKAQV 122

Query: 127 HMML-KMLMPESFFKGKDAADALAIAVCHAY 156
             M+ ++L      +  DAADAL+IA+CH +
Sbjct: 123 QQMITRLLRLHEVPQPDDAADALSIALCHIH 153


>gi|22126140|ref|NP_669563.1| Holliday junction resolvase [Yersinia pestis KIM 10]
 gi|45441701|ref|NP_993240.1| Holliday junction resolvase [Yersinia pestis biovar Microtus str.
           91001]
 gi|51596365|ref|YP_070556.1| Holliday junction resolvase [Yersinia pseudotuberculosis IP 32953]
 gi|108807434|ref|YP_651350.1| Holliday junction resolvase [Yersinia pestis Antiqua]
 gi|108811696|ref|YP_647463.1| Holliday junction resolvase [Yersinia pestis Nepal516]
 gi|145598361|ref|YP_001162437.1| Holliday junction resolvase [Yersinia pestis Pestoides F]
 gi|149366015|ref|ZP_01888050.1| crossover junction endodeoxyribonuclease [Yersinia pestis
           CA88-4125]
 gi|153949084|ref|YP_001401005.1| Holliday junction resolvase [Yersinia pseudotuberculosis IP 31758]
 gi|162418674|ref|YP_001606845.1| Holliday junction resolvase [Yersinia pestis Angola]
 gi|165926386|ref|ZP_02222218.1| crossover junction endodeoxyribonuclease RuvC [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165938887|ref|ZP_02227441.1| crossover junction endodeoxyribonuclease RuvC [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|166009096|ref|ZP_02229994.1| crossover junction endodeoxyribonuclease RuvC [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166210551|ref|ZP_02236586.1| crossover junction endodeoxyribonuclease RuvC [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|167401485|ref|ZP_02306982.1| crossover junction endodeoxyribonuclease RuvC [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167420351|ref|ZP_02312104.1| crossover junction endodeoxyribonuclease RuvC [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167424499|ref|ZP_02316252.1| crossover junction endodeoxyribonuclease RuvC [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|167470864|ref|ZP_02335568.1| crossover junction endodeoxyribonuclease RuvC [Yersinia pestis
           FV-1]
 gi|170024379|ref|YP_001720884.1| Holliday junction resolvase [Yersinia pseudotuberculosis YPIII]
 gi|186895406|ref|YP_001872518.1| Holliday junction resolvase [Yersinia pseudotuberculosis PB1/+]
 gi|218929163|ref|YP_002347038.1| Holliday junction resolvase [Yersinia pestis CO92]
 gi|229894770|ref|ZP_04509950.1| component of RuvABC resolvasome, endonuclease [Yersinia pestis
           Pestoides A]
 gi|229897472|ref|ZP_04512628.1| component of RuvABC resolvasome, endonuclease [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229898119|ref|ZP_04513268.1| component of RuvABC resolvasome, endonuclease [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229901978|ref|ZP_04517099.1| component of RuvABC resolvasome, endonuclease [Yersinia pestis
           Nepal516]
 gi|270490838|ref|ZP_06207912.1| crossover junction endodeoxyribonuclease RuvC [Yersinia pestis KIM
           D27]
 gi|294503878|ref|YP_003567940.1| Holliday junction resolvase [Yersinia pestis Z176003]
 gi|20978748|sp|Q8ZEU7|RUVC_YERPE RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|81639433|sp|Q66AU1|RUVC_YERPS RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|123372470|sp|Q1C817|RUVC_YERPA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|123373280|sp|Q1CJG7|RUVC_YERPN RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|166233312|sp|A4TJK2|RUVC_YERPP RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|167012684|sp|A7FIC7|RUVC_YERP3 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|226698770|sp|A9QYX5|RUVC_YERPG RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|238688452|sp|B1JLL2|RUVC_YERPY RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|238691370|sp|B2K322|RUVC_YERPB RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|21959101|gb|AAM85814.1|AE013828_5 Holliday junction nuclease [Yersinia pestis KIM 10]
 gi|45436563|gb|AAS62117.1| crossover junction endodeoxyribonuclease [Yersinia pestis biovar
           Microtus str. 91001]
 gi|51589647|emb|CAH21277.1| crossover junction endodeoxyribonuclease [Yersinia
           pseudotuberculosis IP 32953]
 gi|108775344|gb|ABG17863.1| Holliday junction endonuclease RuvC [Yersinia pestis Nepal516]
 gi|108779347|gb|ABG13405.1| Holliday junction endonuclease RuvC [Yersinia pestis Antiqua]
 gi|115347774|emb|CAL20691.1| crossover junction endodeoxyribonuclease [Yersinia pestis CO92]
 gi|145210057|gb|ABP39464.1| Holliday junction endonuclease RuvC [Yersinia pestis Pestoides F]
 gi|149292428|gb|EDM42502.1| crossover junction endodeoxyribonuclease [Yersinia pestis
           CA88-4125]
 gi|152960579|gb|ABS48040.1| crossover junction endodeoxyribonuclease RuvC [Yersinia
           pseudotuberculosis IP 31758]
 gi|162351489|gb|ABX85437.1| crossover junction endodeoxyribonuclease RuvC [Yersinia pestis
           Angola]
 gi|165913250|gb|EDR31873.1| crossover junction endodeoxyribonuclease RuvC [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|165921607|gb|EDR38804.1| crossover junction endodeoxyribonuclease RuvC [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165991651|gb|EDR43952.1| crossover junction endodeoxyribonuclease RuvC [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166207731|gb|EDR52211.1| crossover junction endodeoxyribonuclease RuvC [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|166962046|gb|EDR58067.1| crossover junction endodeoxyribonuclease RuvC [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167049181|gb|EDR60589.1| crossover junction endodeoxyribonuclease RuvC [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167056381|gb|EDR66150.1| crossover junction endodeoxyribonuclease RuvC [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|169750913|gb|ACA68431.1| crossover junction endodeoxyribonuclease RuvC [Yersinia
           pseudotuberculosis YPIII]
 gi|186698432|gb|ACC89061.1| crossover junction endodeoxyribonuclease RuvC [Yersinia
           pseudotuberculosis PB1/+]
 gi|229680874|gb|EEO76969.1| component of RuvABC resolvasome, endonuclease [Yersinia pestis
           Nepal516]
 gi|229688835|gb|EEO80902.1| component of RuvABC resolvasome, endonuclease [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229693809|gb|EEO83858.1| component of RuvABC resolvasome, endonuclease [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229702243|gb|EEO90262.1| component of RuvABC resolvasome, endonuclease [Yersinia pestis
           Pestoides A]
 gi|262362003|gb|ACY58724.1| Holliday junction resolvase [Yersinia pestis D106004]
 gi|262365860|gb|ACY62417.1| Holliday junction resolvase [Yersinia pestis D182038]
 gi|270339342|gb|EFA50119.1| crossover junction endodeoxyribonuclease RuvC [Yersinia pestis KIM
           D27]
 gi|294354337|gb|ADE64678.1| Holliday junction resolvase [Yersinia pestis Z176003]
 gi|320015266|gb|ADV98837.1| component of RuvABC resolvasome, endonuclease [Yersinia pestis
           biovar Medievalis str. Harbin 35]
          Length = 173

 Score =  100 bits (249), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 61/150 (40%), Positives = 94/150 (62%), Gaps = 1/150 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           ++GIDPG R TG+G++   G  L ++ SG I + V   +  RL  +Y G+T++I  ++P+
Sbjct: 4   VLGIDPGSRVTGYGVIRQQGRQLTYLGSGCIRTVV-DDMPTRLKLIYAGVTEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+  + LKLGQAR  AI++     +PVSEYA   +K+ V+G G  +K Q+
Sbjct: 63  FFAIEQVFMAKNPDSALKLGQARGAAIVAAVNLNLPVSEYAARQVKQTVVGTGAAEKSQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAY 156
             M++ L+        DAADALAIA+ H +
Sbjct: 123 QHMVRSLLKLPANPQADAADALAIAITHCH 152


>gi|312129060|ref|YP_003996400.1| crossover junction endodeoxyribonuclease ruvc [Leadbetterella
           byssophila DSM 17132]
 gi|311905606|gb|ADQ16047.1| crossover junction endodeoxyribonuclease RuvC [Leadbetterella
           byssophila DSM 17132]
          Length = 189

 Score =  100 bits (249), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 52/158 (32%), Positives = 89/158 (56%), Gaps = 7/158 (4%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+G+DPG R  G+GI++V    L  +  G +      S   +L +++E +T +I  + P+
Sbjct: 10  ILGVDPGTRVMGYGIIEVKNSQLKVIQYGVLRLEKLTSHELKLKRIFERITQLINEYLPD 69

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E  F  ++  + LKLG+A+ +A+ +     I + EY P  +K++V G G+  K+Q+
Sbjct: 70  EMAIEAPFYGENVQSMLKLGRAQGVAMAAALAKDINIVEYLPKKVKQSVTGNGNATKEQV 129

Query: 127 HMMLKML----MPESFFKGKDAADALAIAVCHAYHANS 160
             ML+ L    +  +F    DA DALA+ VCH  H+ +
Sbjct: 130 AYMLEKLFNHPLERTFL---DATDALAVGVCHFMHSGT 164


>gi|300770216|ref|ZP_07080095.1| crossover junction endoribonuclease subunit C [Sphingobacterium
           spiritivorum ATCC 33861]
 gi|300762692|gb|EFK59509.1| crossover junction endoribonuclease subunit C [Sphingobacterium
           spiritivorum ATCC 33861]
          Length = 189

 Score =  100 bits (249), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 89/158 (56%), Gaps = 9/158 (5%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG    G+G+V   G  +  +S G I        A +L ++++  + +I+ ++P+
Sbjct: 11  ILGIDPGTVVLGYGLVKETGKKISLISLGVIKMGHLDDHALKLQRIFKKTSALIEEYKPD 70

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+E  F  K+    LKLG+A+ +A+ +     IP+ EY+P  IK++V G G+  K+Q+
Sbjct: 71  CVALEAPFYGKNIQVMLKLGRAQGVAMAAALNHDIPIFEYSPRKIKQSVTGNGNATKEQV 130

Query: 127 HMMLKMLM-----PESFFKGKDAADALAIAVCHAYHAN 159
             MLK L+     PE      DA D LA+AVCH++  N
Sbjct: 131 AAMLKTLLSFNETPEFL----DATDGLAVAVCHSFQQN 164


>gi|123442636|ref|YP_001006613.1| Holliday junction resolvase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|166233311|sp|A1JRK2|RUVC_YERE8 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|122089597|emb|CAL12446.1| crossover junction endodeoxyribonuclease [Yersinia enterocolitica
           subsp. enterocolitica 8081]
          Length = 173

 Score =  100 bits (249), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 61/150 (40%), Positives = 94/150 (62%), Gaps = 1/150 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           ++GIDPG R TG+G++   G  L ++ SG I + V   +  RL  +Y G+T++I  ++P+
Sbjct: 4   VLGIDPGSRVTGYGVIRQQGRQLTYLGSGCIRTVV-DDMPTRLKLIYAGVTEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+  + LKLGQAR  AI++     +PVSEYA   +K+ V+G G  +K Q+
Sbjct: 63  FFAIEQVFMAKNPDSALKLGQARGAAIVAAVNLNLPVSEYAARQVKQTVVGTGAAEKSQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAY 156
             M++ L+        DAADALAIA+ H +
Sbjct: 123 QHMVRSLLQLPANPQADAADALAIAITHCH 152


>gi|254448977|ref|ZP_05062431.1| crossover junction endodeoxyribonuclease RuvC [gamma
           proteobacterium HTCC5015]
 gi|198261371|gb|EDY85662.1| crossover junction endodeoxyribonuclease RuvC [gamma
           proteobacterium HTCC5015]
          Length = 194

 Score =  100 bits (248), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 52/134 (38%), Positives = 82/134 (61%), Gaps = 1/134 (0%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M ++ RI+GIDPG    G G+V+VA      +    + +   + L  RL  + E +  VI
Sbjct: 1   MAETRRILGIDPGSVTMGLGVVEVASSRQAHLYHAAVKTGGGE-LPKRLGVIVEAVAQVI 59

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             W+P+E A+E+VFV+ +A++ LKLGQAR  AI +   A++PVSEY+   +K++V+G G 
Sbjct: 60  VEWQPDEVAIEEVFVSANAMSALKLGQARGAAICAAVQAQLPVSEYSARQVKQSVVGTGA 119

Query: 121 GDKKQIHMMLKMLM 134
             K Q+  M+K L+
Sbjct: 120 ASKDQVQHMVKALL 133


>gi|33151782|ref|NP_873135.1| Holliday junction resolvase [Haemophilus ducreyi 35000HP]
 gi|38372439|sp|Q7VNF5|RUVC_HAEDU RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|33148003|gb|AAP95524.1| crossover junction endodeoxyribonuclease [Haemophilus ducreyi
           35000HP]
          Length = 192

 Score =  100 bits (248), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 65/150 (43%), Positives = 93/150 (62%), Gaps = 1/150 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+GI+   G  L ++ SG I       L  RL  +Y G+T++I  ++P+
Sbjct: 4   ILGIDPGSRITGYGIIRQQGRQLEYLGSGAI-RINASDLPSRLKHIYAGVTEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR  AI++     +PV EYA   +K+ V G+G  DK Q+
Sbjct: 63  MFAIEQVFMAKNADSALKLGQARGTAIVAAVNHDLPVFEYAARLVKQTVTGIGSADKLQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAY 156
             M+  ++  S     DAADALAIA+ HA+
Sbjct: 123 QDMVTRMLQLSAKPQVDAADALAIAITHAH 152


>gi|238792582|ref|ZP_04636215.1| Crossover junction endodeoxyribonuclease ruvC [Yersinia intermedia
           ATCC 29909]
 gi|238728217|gb|EEQ19738.1| Crossover junction endodeoxyribonuclease ruvC [Yersinia intermedia
           ATCC 29909]
          Length = 173

 Score =  100 bits (248), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 61/150 (40%), Positives = 94/150 (62%), Gaps = 1/150 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           ++GIDPG R TG+G++   G  L ++ SG I + V   +  RL  +Y G+T++I  ++P+
Sbjct: 4   VLGIDPGSRVTGYGVIRQQGRQLTYLGSGCIRTVV-DDMPTRLKLIYAGVTEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+  + LKLGQAR  AI++     +PVSEYA   +K+ V+G G  +K Q+
Sbjct: 63  FFAIEQVFMAKNPDSALKLGQARGAAIVAAVNLNLPVSEYAARQVKQTVVGTGAAEKSQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAY 156
             M++ L+        DAADALAIA+ H +
Sbjct: 123 QHMVRSLLKLPANPQADAADALAIAITHCH 152


>gi|169831523|ref|YP_001717505.1| crossover junction endodeoxyribonuclease RuvC [Candidatus
           Desulforudis audaxviator MP104C]
 gi|169638367|gb|ACA59873.1| crossover junction endodeoxyribonuclease RuvC [Candidatus
           Desulforudis audaxviator MP104C]
          Length = 162

 Score =  100 bits (248), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 54/152 (35%), Positives = 92/152 (60%), Gaps = 1/152 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           ++G+DPGL  TG+G++ V G++   ++   + +      A RL  LY  +  + +  RP+
Sbjct: 4   VMGLDPGLATTGYGVLQVTGNSYEVIAYDCLRTPAGLPDADRLEMLYRLIATLHERHRPQ 63

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E AVEQ+F +++    L++GQAR +A+L+ A A   + EY P  IK+ + G G  DKKQ+
Sbjct: 64  EVAVEQLFFHRNVTTALQVGQARGVALLAAAQAGARIIEYTPLQIKQGITGSGRADKKQV 123

Query: 127 HMMLKMLMPESFF-KGKDAADALAIAVCHAYH 157
             M++ ++  +   +  D ADALA+A+CH +H
Sbjct: 124 QYMVRTILGLAVTPQPDDVADALAVALCHCHH 155


>gi|325914721|ref|ZP_08177059.1| Holliday junction endonuclease RuvC [Xanthomonas vesicatoria ATCC
           35937]
 gi|325915803|ref|ZP_08178103.1| Holliday junction endonuclease RuvC [Xanthomonas vesicatoria ATCC
           35937]
 gi|325918024|ref|ZP_08180187.1| Holliday junction endonuclease RuvC [Xanthomonas vesicatoria ATCC
           35937]
 gi|325535757|gb|EGD07590.1| Holliday junction endonuclease RuvC [Xanthomonas vesicatoria ATCC
           35937]
 gi|325537986|gb|EGD09682.1| Holliday junction endonuclease RuvC [Xanthomonas vesicatoria ATCC
           35937]
 gi|325538998|gb|EGD10656.1| Holliday junction endonuclease RuvC [Xanthomonas vesicatoria ATCC
           35937]
          Length = 147

 Score =  100 bits (248), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 57/138 (41%), Positives = 82/138 (59%), Gaps = 4/138 (2%)

Query: 6   RIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           RI+GIDPG +RTG GI+DV  G     V    ++       A RL +L  GL ++I+ +R
Sbjct: 3   RILGIDPGSQRTGVGIIDVDEGGRSRHVHHAPLLLLGEGDFAQRLKRLLHGLGELIETYR 62

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+E A+E+VF+ K A + LKLG AR  AI +  +  +PV EYA   IK A++G G  DK 
Sbjct: 63  PDEVAIEKVFMGKSADSALKLGHARGAAICAVVMRDLPVHEYAATEIKLALVGKGGADKV 122

Query: 125 QIHMMLKMLMPESFFKGK 142
           Q+  M+ +++     KGK
Sbjct: 123 QVQHMVGIMLN---LKGK 137


>gi|238762970|ref|ZP_04623937.1| Crossover junction endodeoxyribonuclease ruvC [Yersinia
           kristensenii ATCC 33638]
 gi|238698728|gb|EEP91478.1| Crossover junction endodeoxyribonuclease ruvC [Yersinia
           kristensenii ATCC 33638]
          Length = 173

 Score =  100 bits (248), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 61/150 (40%), Positives = 94/150 (62%), Gaps = 1/150 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           ++GIDPG R TG+G++   G  L ++ SG I + V   +  RL  +Y G+T++I  ++P+
Sbjct: 4   VLGIDPGSRVTGYGVIRQQGRQLTYLGSGCIRTVV-DDMPTRLKLIYAGVTEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+  + LKLGQAR  AI++     +PVSEYA   +K+ V+G G  +K Q+
Sbjct: 63  FFAIEQVFMAKNPDSALKLGQARGAAIVAAVNLNLPVSEYAARQVKQTVVGTGAAEKSQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAY 156
             M++ L+        DAADALAIA+ H +
Sbjct: 123 QHMVRSLLKLPANPQADAADALAIAITHCH 152


>gi|254362419|ref|ZP_04978528.1| crossover junction endodeoxyribonuclease [Mannheimia haemolytica
           PHL213]
 gi|261494088|ref|ZP_05990591.1| crossover junction endodeoxyribonuclease [Mannheimia haemolytica
           serotype A2 str. BOVINE]
 gi|261496071|ref|ZP_05992481.1| crossover junction endodeoxyribonuclease [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|153094008|gb|EDN74924.1| crossover junction endodeoxyribonuclease [Mannheimia haemolytica
           PHL213]
 gi|261308321|gb|EEY09614.1| crossover junction endodeoxyribonuclease [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261310254|gb|EEY11454.1| crossover junction endodeoxyribonuclease [Mannheimia haemolytica
           serotype A2 str. BOVINE]
          Length = 192

 Score =  100 bits (248), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 62/150 (41%), Positives = 94/150 (62%), Gaps = 1/150 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I +   + L  RL ++Y G++++I  ++P 
Sbjct: 4   ILGIDPGSRVTGYGVIRQNGRQLEYLGSGAIRTTA-EDLPTRLKRIYAGVSEIITQFQPN 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+  + LKLGQAR  AI++     +PV EYA   +K+ V G+G  DK Q+
Sbjct: 63  MFAIEQVFMAKNPDSALKLGQARGTAIVAAVNHDLPVFEYAARLVKQTVTGIGSADKVQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAY 156
             M+  ++  S     DAADALAIA+ HA+
Sbjct: 123 QDMVTRMLKLSAKPQADAADALAIAITHAH 152


>gi|238796295|ref|ZP_04639804.1| Crossover junction endodeoxyribonuclease ruvC [Yersinia mollaretii
           ATCC 43969]
 gi|238719740|gb|EEQ11547.1| Crossover junction endodeoxyribonuclease ruvC [Yersinia mollaretii
           ATCC 43969]
          Length = 173

 Score =  100 bits (248), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 62/150 (41%), Positives = 94/150 (62%), Gaps = 1/150 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I + V   +  RL  +Y G+T++I  ++P+
Sbjct: 4   ILGIDPGSRVTGYGVIRQEGRQLTYLGSGCIRTVV-DDMPTRLKLIYAGVTEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+  + LKLGQAR  AI++     +PVSEYA   +K+ V+G G  +K Q+
Sbjct: 63  FFAIEQVFMAKNPDSALKLGQARGAAIVAAVNLDLPVSEYAARQVKQTVVGTGAAEKSQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAY 156
             M++ L+        DAADALAIA+ H +
Sbjct: 123 QHMVRSLLKLPANPQADAADALAIAITHCH 152


>gi|325917781|ref|ZP_08179965.1| Holliday junction endonuclease RuvC [Xanthomonas vesicatoria ATCC
           35937]
 gi|325535997|gb|EGD07809.1| Holliday junction endonuclease RuvC [Xanthomonas vesicatoria ATCC
           35937]
          Length = 174

 Score =  100 bits (248), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 57/138 (41%), Positives = 82/138 (59%), Gaps = 4/138 (2%)

Query: 6   RIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           RI+GIDPG +RTG GI+DV  G     V    ++       A RL +L  GL ++I+ +R
Sbjct: 3   RILGIDPGSQRTGVGIIDVDEGGRSRHVHHAPLLLLGEGDFAQRLKRLLHGLGELIETYR 62

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+E A+E+VF+ K A + LKLG AR  AI +  +  +PV EYA   IK A++G G  DK 
Sbjct: 63  PDEVAIEKVFMGKSADSALKLGHARGAAICAVVMRDLPVHEYAATEIKLALVGKGGADKV 122

Query: 125 QIHMMLKMLMPESFFKGK 142
           Q+  M+ +++     KGK
Sbjct: 123 QVQHMVGIMLN---LKGK 137


>gi|161501898|ref|YP_219548.2| Holliday junction resolvase [Chlamydophila abortus S26/3]
          Length = 168

 Score =  100 bits (248), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 56/154 (36%), Positives = 90/154 (58%), Gaps = 4/154 (2%)

Query: 7   IIGIDPGLRRTGWGIVDVAGD-NLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           I+GIDPG   +G+ I+ V     +   S G I    + SL  R  QL++ L+ V+ N  P
Sbjct: 5   IMGIDPGTLVSGYAIILVEQRYKIRAHSYGAIRLSSKDSLTQRYKQLFQTLSGVLDNVTP 64

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
           +   +E  +V+K+  + +KLG  R + +L+ AL  IPV EY PN  K+AV+G G+  K+Q
Sbjct: 65  DAVVLETQYVHKNPQSAIKLGMGRGVLVLAAALRDIPVFEYTPNVAKRAVVGKGNASKQQ 124

Query: 126 IHMMLKMLM--PESFFKG-KDAADALAIAVCHAY 156
           + +M+  ++  P+      +D ADA A+A+CHA+
Sbjct: 125 VQLMVSKILNIPDVLNSDCEDIADAFALAICHAH 158


>gi|163753114|ref|ZP_02160238.1| Holliday junction resolvase [Kordia algicida OT-1]
 gi|161326846|gb|EDP98171.1| Holliday junction resolvase [Kordia algicida OT-1]
          Length = 191

 Score =  100 bits (248), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 50/152 (32%), Positives = 87/152 (57%), Gaps = 1/152 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG    G+G++ V G  + F+    +     +    +L  ++E   ++I  + P+
Sbjct: 14  ILGIDPGTTIMGFGLIKVVGKKMHFLQLNELQLQKYKDHYLKLKLIFERTVELIDTYHPD 73

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E  F  K+  + LKLG+A+ +A+ +     +P++EY+P  IK A+ G G+  K+Q+
Sbjct: 74  EIAIEAPFFGKNVQSMLKLGRAQGVAMAAGLSREVPITEYSPKKIKMAITGNGNASKEQV 133

Query: 127 HMMLKMLMP-ESFFKGKDAADALAIAVCHAYH 157
             ML+ L+  ++  K  D+ D LA AVCH Y+
Sbjct: 134 AKMLQSLLQLKTLPKNLDSTDGLAAAVCHFYN 165


>gi|81313057|sp|Q5L6Z4|RUVC_CHLAB RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|62147830|emb|CAH63576.1| putative crossover junction endodeoxyribonuclease RuvC
           [Chlamydophila abortus S26/3]
          Length = 165

 Score =  100 bits (248), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 56/154 (36%), Positives = 90/154 (58%), Gaps = 4/154 (2%)

Query: 7   IIGIDPGLRRTGWGIVDVAGD-NLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           I+GIDPG   +G+ I+ V     +   S G I    + SL  R  QL++ L+ V+ N  P
Sbjct: 2   IMGIDPGTLVSGYAIILVEQRYKIRAHSYGAIRLSSKDSLTQRYKQLFQTLSGVLDNVTP 61

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
           +   +E  +V+K+  + +KLG  R + +L+ AL  IPV EY PN  K+AV+G G+  K+Q
Sbjct: 62  DAVVLETQYVHKNPQSAIKLGMGRGVLVLAAALRDIPVFEYTPNVAKRAVVGKGNASKQQ 121

Query: 126 IHMMLKMLM--PESFFKG-KDAADALAIAVCHAY 156
           + +M+  ++  P+      +D ADA A+A+CHA+
Sbjct: 122 VQLMVSKILNIPDVLNSDCEDIADAFALAICHAH 155


>gi|331000257|ref|ZP_08323941.1| crossover junction endodeoxyribonuclease RuvC [Parasutterella
           excrementihominis YIT 11859]
 gi|329572423|gb|EGG54076.1| crossover junction endodeoxyribonuclease RuvC [Parasutterella
           excrementihominis YIT 11859]
          Length = 201

 Score =  100 bits (248), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 55/155 (35%), Positives = 92/155 (59%), Gaps = 2/155 (1%)

Query: 2   RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           +K++RI+GIDPGL  TG+G VD    +  +V+SG +++     L+ RL  +++ L+ +I+
Sbjct: 3   QKAVRILGIDPGLNHTGYGFVDFVPGHFTYVASG-VLNVPAGELSDRLGFIFKSLSALIE 61

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
              P  A++E+ F+N +A +++ L  AR  A+ + A   I   E +   IKK+V G G  
Sbjct: 62  EHHPNVASIEKTFLNTNAQSSMLLSHARGAAMCAVACHSILCKEISTREIKKSVTGYGAA 121

Query: 122 DKKQI-HMMLKMLMPESFFKGKDAADALAIAVCHA 155
           DK+Q+  M+L+ L  E      D +DALA A+C+ 
Sbjct: 122 DKEQVQQMVLRHLKLEDTRFSPDESDALATAICYG 156


>gi|329296285|ref|ZP_08253621.1| Holliday junction resolvase [Plautia stali symbiont]
          Length = 175

 Score =  100 bits (248), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/150 (42%), Positives = 93/150 (62%), Gaps = 1/150 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I + V   L  RL  +Y G++++I  + P+
Sbjct: 4   ILGIDPGSRVTGYGVIRQTGRQLSYLGSGCIRTNV-TDLPSRLKLIYAGVSEIITQFAPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR  AI++     +PV EYA   +K+ V G+G  +K Q+
Sbjct: 63  YFAIEQVFMAKNADSALKLGQARGAAIVAAVNLDLPVFEYAARQVKQTVTGIGSAEKSQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAY 156
             M++ L+        DAADALAIA+ H Y
Sbjct: 123 QHMVRTLLKLLANPQADAADALAIAITHCY 152


>gi|303258187|ref|ZP_07344194.1| crossover junction endodeoxyribonuclease RuvC [Burkholderiales
           bacterium 1_1_47]
 gi|302858940|gb|EFL82024.1| crossover junction endodeoxyribonuclease RuvC [Burkholderiales
           bacterium 1_1_47]
          Length = 201

 Score =  100 bits (248), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 55/155 (35%), Positives = 92/155 (59%), Gaps = 2/155 (1%)

Query: 2   RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           +K++RI+GIDPGL  TG+G+VD    +  +V+SG +++     L+ RL  +++ L+ +I+
Sbjct: 3   QKAVRILGIDPGLNHTGYGLVDFVPGHFTYVASG-VLNVPAGELSDRLGFIFKSLSALIE 61

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
              P  A++E+ F+N +A +++ L  AR  A+ + A   I   E +   IKK+V G G  
Sbjct: 62  EHHPNVASIEKTFLNTNAQSSMLLSHARGAAMCAVACHSILCKEISTREIKKSVTGYGAA 121

Query: 122 DKKQI-HMMLKMLMPESFFKGKDAADALAIAVCHA 155
           DK Q+  M+L+ L  E      D +DALA A+C+ 
Sbjct: 122 DKDQVQQMVLRHLKLEDTRFSPDESDALATAICYG 156


>gi|120434443|ref|YP_860149.1| Holliday junction resolvase [Gramella forsetii KT0803]
 gi|187611414|sp|A0LXG7|RUVC_GRAFK RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|117576593|emb|CAL65062.1| crossover junction endodeoxyribonuclease RuvC [Gramella forsetii
           KT0803]
          Length = 192

 Score =  100 bits (248), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 59/166 (35%), Positives = 90/166 (54%), Gaps = 4/166 (2%)

Query: 3   KSIRII-GIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           KS RII GIDPG    G+G++ V    + F+    +     +    +L  ++E   ++I 
Sbjct: 11  KSERIILGIDPGTTIMGFGLIKVENKKMSFIQMNELQLSKYKDHYVKLKLIFERTIELID 70

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
           N+ P+E A+E  F  K+  + LKLG+A+ +A+ +     +P++EY P  IK A+ G G+ 
Sbjct: 71  NYHPDEIAIEAPFFGKNVQSMLKLGRAQGVAMAAGLSREVPITEYLPKKIKMAITGNGNA 130

Query: 122 DKKQIHMMLK-MLMPESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
            K+Q+  ML+  L      K  DA D LA AVCH Y  NSG  +I 
Sbjct: 131 SKEQVARMLQSQLNIGKLPKNLDATDGLAAAVCHFY--NSGKTEIG 174


>gi|256027132|ref|ZP_05440966.1| crossover junction endodeoxyribonuclease ruvC [Fusobacterium sp.
           D11]
 gi|260497919|ref|ZP_05816037.1| crossover junction endodeoxyribonuclease RuvC [Fusobacterium sp.
           3_1_33]
 gi|289765113|ref|ZP_06524491.1| crossover junction endodeoxyribonuclease ruvC [Fusobacterium sp.
           D11]
 gi|260196534|gb|EEW94063.1| crossover junction endodeoxyribonuclease RuvC [Fusobacterium sp.
           3_1_33]
 gi|289716668|gb|EFD80680.1| crossover junction endodeoxyribonuclease ruvC [Fusobacterium sp.
           D11]
          Length = 190

 Score = 99.8 bits (247), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 53/151 (35%), Positives = 80/151 (52%), Gaps = 1/151 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R+IGIDPG    G+GI+D   +    V  G I++    S   RL  +Y  +  ++K ++
Sbjct: 1   MRVIGIDPGTAIVGYGIIDYDKNKYSVVDYGVILTSKDLSTEERLEVIYNNMDKILKKYK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           PE  A+E +F  K+    + + QAR + +L      IP+S Y P  +K  + G G  +KK
Sbjct: 61  PEFMAIEDLFYFKNNKTVISVAQARGVILLVGKQNNIPMSNYTPLQVKIGITGYGKAEKK 120

Query: 125 QIHMML-KMLMPESFFKGKDAADALAIAVCH 154
           Q+  M+ K L      K  DAADALAI + H
Sbjct: 121 QVQQMVQKFLGLSEIPKPDDAADALAICITH 151


>gi|242280347|ref|YP_002992476.1| Holliday junction resolvase [Desulfovibrio salexigens DSM 2638]
 gi|242123241|gb|ACS80937.1| crossover junction endodeoxyribonuclease RuvC [Desulfovibrio
           salexigens DSM 2638]
          Length = 168

 Score = 99.8 bits (247), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 54/145 (37%), Positives = 85/145 (58%), Gaps = 1/145 (0%)

Query: 11  DPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAV 70
           DPG R TG+GIV      +  V +GTI +  ++ +  RL ++Y  + ++IK + P+EAA+
Sbjct: 12  DPGTRVTGYGIVRELSGQVSLVDAGTIRTNTKKPMCSRLGEIYSRIAELIKEYSPDEAAI 71

Query: 71  EQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMML 130
           E  FV  +  + LKLGQAR  A+ + A++ + VS Y P  +K  ++G G  DK Q+  M+
Sbjct: 72  ENAFVASNPASALKLGQARGAAMAACAVSGLVVSGYEPTKVKSNLVGSGRADKSQVAFMV 131

Query: 131 KMLMPESFFK-GKDAADALAIAVCH 154
           + ++     K   D  DAL IA+CH
Sbjct: 132 ERILGVKNTKWANDTTDALGIAICH 156


>gi|313901945|ref|ZP_07835362.1| crossover junction endodeoxyribonuclease RuvC [Thermaerobacter
           subterraneus DSM 13965]
 gi|313467791|gb|EFR63288.1| crossover junction endodeoxyribonuclease RuvC [Thermaerobacter
           subterraneus DSM 13965]
          Length = 187

 Score = 99.8 bits (247), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 51/130 (39%), Positives = 84/130 (64%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++++GIDPG    G+G+V VAG  L  V+ G I +   Q  A RL  +Y  L ++++ ++
Sbjct: 1   MQVLGIDPGTATMGFGVVAVAGTTLVPVTYGVIRTPASQPPAQRLAAIYRDLQELLRRYQ 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  AVE++F  K+  + L +GQAR +A+L+ A A +PV EYAP+ +K+AV+G G   K 
Sbjct: 61  PQAMAVERLFFQKNRSSALHVGQARGVALLAAAQAGLPVHEYAPHEVKQAVVGYGRASKV 120

Query: 125 QIHMMLKMLM 134
           Q+  M++ L+
Sbjct: 121 QVQRMVQALL 130


>gi|260060745|ref|YP_003193825.1| Holliday junction resolvase [Robiginitalea biformata HTCC2501]
 gi|88784875|gb|EAR16044.1| Holliday junction resolvase [Robiginitalea biformata HTCC2501]
          Length = 188

 Score = 99.8 bits (247), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 52/152 (34%), Positives = 87/152 (57%), Gaps = 1/152 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG    G+GI+ V G  + FV    ++         +L  +++   ++I  + P+
Sbjct: 11  ILGIDPGTTIMGFGIIRVQGKQMEFVQMNELILRKYDDPFTKLKLIFDRTLELIDTYHPD 70

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E  F  K+  + LKLG+A+ +A+ +    ++P++EY P  IK A+ G G+  K+Q+
Sbjct: 71  EIAIEAPFYGKNVQSMLKLGRAQGVAMAAGLSRQVPITEYLPKKIKMAITGNGNASKEQV 130

Query: 127 HMMLKMLMP-ESFFKGKDAADALAIAVCHAYH 157
             ML+ L+  +S  K  D+ D LA AVCH Y+
Sbjct: 131 ARMLQSLLELKSLPKNLDSTDGLAAAVCHFYN 162


>gi|188994977|ref|YP_001929229.1| Holliday junction resolvase [Porphyromonas gingivalis ATCC 33277]
 gi|238691482|sp|B2RJT7|RUVC_PORG3 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|188594657|dbj|BAG33632.1| putative crossover junction endodeoxyribonuclease RuvC
           [Porphyromonas gingivalis ATCC 33277]
          Length = 189

 Score = 99.8 bits (247), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 58/157 (36%), Positives = 95/157 (60%), Gaps = 5/157 (3%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+G+DPG    G+G++ VAG+    ++ G I      +   RL ++++ +T +I  + P+
Sbjct: 8   IMGVDPGTILMGYGMLHVAGNTPRLMAMGVIRLEKFDNHYIRLKRIFDRITGLIDEFLPD 67

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALAR-IPVSEYAPNTIKKAVIGVGHGDKKQ 125
           E A+E  F  K+  + LKLG+A+ +A ++ ALAR IP++EYAP  IK+A+ G G+  K+Q
Sbjct: 68  EMAIEAPFFGKNVQSMLKLGRAQGVA-MAAALARDIPITEYAPMRIKQAITGNGNASKEQ 126

Query: 126 IHMMLK--MLMP-ESFFKGKDAADALAIAVCHAYHAN 159
           +  ML+  + +P E      DA D LA AVCH +  +
Sbjct: 127 VAGMLQRYLRIPDEQMLPEMDATDGLAAAVCHFFQTS 163


>gi|300728000|ref|ZP_07061378.1| crossover junction endodeoxyribonuclease RuvC [Prevotella bryantii
           B14]
 gi|299774842|gb|EFI71456.1| crossover junction endodeoxyribonuclease RuvC [Prevotella bryantii
           B14]
          Length = 232

 Score = 99.8 bits (247), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 54/158 (34%), Positives = 92/158 (58%), Gaps = 5/158 (3%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAF-RLCQLYEGLTDVIKNWRP 65
           I+GIDPG    G+G++ V G++   +  G ++   R+S  + RL ++++ +T +I  + P
Sbjct: 14  ILGIDPGTNVMGYGLIKVVGNHASMMVMG-VIDMRRESDPYLRLGKIFDRVTGIIDEYLP 72

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
           +E A+E  F  K+  + LKLG+A+ +AI +     +P+ EYAP  IK+A+ G G   K+Q
Sbjct: 73  DEMAIEAPFFEKNIQSMLKLGRAQGVAIAAAIHHDVPIHEYAPLKIKQAITGQGQASKEQ 132

Query: 126 IHMMLKMLM---PESFFKGKDAADALAIAVCHAYHANS 160
           +  ML+ L+    +   K  DA DAL  A CH   +++
Sbjct: 133 VASMLQRLLHISQDDMPKFMDATDALGAAYCHFLQSST 170


>gi|126668400|ref|ZP_01739357.1| Holliday junction resolvase [Marinobacter sp. ELB17]
 gi|126627109|gb|EAZ97749.1| Holliday junction resolvase [Marinobacter sp. ELB17]
          Length = 175

 Score = 99.8 bits (247), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 69/165 (41%), Positives = 107/165 (64%), Gaps = 8/165 (4%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVR---QSLAFRLCQLYEGLTDVIKNW 63
           I+G+DPG R TG+GI+ V G +  ++ SG    C+R   + +A RL  +++ L  +I  +
Sbjct: 4   ILGVDPGSRITGYGIIRVEGRHTEYIDSG----CIRVGEKPMAERLRVIFQSLVTLIAEF 59

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RPEE A+EQVF+ ++  + LKLGQAR  AI++ A + + V EY+   +K+AV+G G  +K
Sbjct: 60  RPEEFAIEQVFMARNPDSALKLGQARGAAIVAAATSGLEVHEYSARQVKQAVVGSGGAEK 119

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
            Q+  M+++L+  S    +DAADALAIA+CHA H N    ++A Q
Sbjct: 120 AQVQHMVQVLLSLSRKPQEDAADALAIALCHA-HMNQSLLRVAGQ 163


>gi|257457989|ref|ZP_05623148.1| crossover junction endodeoxyribonuclease RuvC [Treponema vincentii
           ATCC 35580]
 gi|257444702|gb|EEV19786.1| crossover junction endodeoxyribonuclease RuvC [Treponema vincentii
           ATCC 35580]
          Length = 164

 Score = 99.8 bits (247), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 46/128 (35%), Positives = 80/128 (62%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPGL  TG+GI+ V G  +  +  G I +   Q    RL  +++ LT++I+ + P 
Sbjct: 12  IMGIDPGLASTGYGIIAVTGSRMRCIDYGVIQTEAGQIQGNRLLIVFDRLTELIRAYHPI 71

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
            A +E ++  K+  + L + +AR + +L+ A A +PV +YAPN IKKAV G+   +K+Q+
Sbjct: 72  AAGIETLYFAKNVTSALSVSEARGVTLLALAQAGVPVFQYAPNAIKKAVTGIAQAEKQQV 131

Query: 127 HMMLKMLM 134
            + +++L+
Sbjct: 132 QLTVQLLL 139


>gi|218888285|ref|YP_002437606.1| Holliday junction resolvase [Desulfovibrio vulgaris str. 'Miyazaki
           F']
 gi|218759239|gb|ACL10138.1| crossover junction endodeoxyribonuclease RuvC [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 197

 Score = 99.4 bits (246), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 56/145 (38%), Positives = 79/145 (54%), Gaps = 1/145 (0%)

Query: 10  IDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAA 69
           IDPG + TGWG+V      L  V  G I        A RL  L+  L  ++  + P+EAA
Sbjct: 41  IDPGSQCTGWGVVREMSGVLTLVDCGAIRP-KGDDFAARLGHLFRELHALVGRYAPDEAA 99

Query: 70  VEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMM 129
           +E V   ++    LKLGQAR +A+ + A   + V++Y P  IKKA++G G  DK+Q+  M
Sbjct: 100 IENVHAARNVATALKLGQARGVAVAACAAHGVVVADYQPTEIKKALVGTGGADKEQVSFM 159

Query: 130 LKMLMPESFFKGKDAADALAIAVCH 154
           +  ++      G D  DALA AVCH
Sbjct: 160 VARVLGAKGGWGLDTGDALAAAVCH 184


>gi|256420289|ref|YP_003120942.1| crossover junction endodeoxyribonuclease RuvC [Chitinophaga
           pinensis DSM 2588]
 gi|256035197|gb|ACU58741.1| crossover junction endodeoxyribonuclease RuvC [Chitinophaga
           pinensis DSM 2588]
          Length = 202

 Score = 99.4 bits (246), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 92/163 (56%), Gaps = 9/163 (5%)

Query: 3   KSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
           KS  I+GIDPG    G+G++ V G     +    +     +    RL  ++  + ++I+ 
Sbjct: 20  KSKIILGIDPGTLVMGYGLILVEGSKASLLDMNVLKLSRHKDHYERLQLIHARVHELIRE 79

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
            +P   A+E  F  K+  + LKLG+A+ +AI +   A +PV+EYAP  +K+++ G G+ D
Sbjct: 80  HKPVSCAIEAPFFGKNVQSMLKLGRAQGVAIATAMQAGVPVTEYAPKKVKQSITGNGNAD 139

Query: 123 KKQIHMMLKMLM-----PESFFKGKDAADALAIAVCHAYHANS 160
           K+QI  ML+ ++     PE      DA+DALA+AVCH +  +S
Sbjct: 140 KEQIWQMLQRILHFNERPEFL----DASDALAVAVCHFFQESS 178


>gi|42527370|ref|NP_972468.1| crossover junction endodeoxyribonuclease RuvC [Treponema denticola
           ATCC 35405]
 gi|81570208|sp|Q73LJ8|RUVC_TREDE RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|41817955|gb|AAS12379.1| crossover junction endodeoxyribonuclease RuvC [Treponema denticola
           ATCC 35405]
          Length = 178

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 87/135 (64%), Gaps = 2/135 (1%)

Query: 2   RKSIR--IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDV 59
           +K++R  +IGIDPGL  TG+GI+  + +    +  G+I +        RL ++++ ++++
Sbjct: 10  KKNLRPCVIGIDPGLANTGYGIISFSNNRFECIEYGSISTEPHLLQGERLLKIFDKVSEL 69

Query: 60  IKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVG 119
           I+ +RP+EA +E ++  K+A + + + +AR + +L+ A   + V EYAPN+IKKAV G+ 
Sbjct: 70  IEKYRPKEAGIETLYFAKNATSAMSVSEARGVVLLALAQGGVRVGEYAPNSIKKAVTGIA 129

Query: 120 HGDKKQIHMMLKMLM 134
             +K+Q+   +K+++
Sbjct: 130 QAEKRQVQEAVKLIL 144


>gi|85712317|ref|ZP_01043368.1| Holliday junction resolvasome, endonuclease subunit [Idiomarina
           baltica OS145]
 gi|85693944|gb|EAQ31891.1| Holliday junction resolvasome, endonuclease subunit [Idiomarina
           baltica OS145]
          Length = 179

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/158 (43%), Positives = 104/158 (65%), Gaps = 4/158 (2%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTI----VSCVRQSLAFRLCQLYEGLTDVIKN 62
           I+GIDPG R TG+GI+   G +L +++SG I     +    SLA +L +++  + ++I  
Sbjct: 4   ILGIDPGSRLTGFGIIQQQGRHLSYIASGCIRVTGTTAQPLSLAEKLKRIHNSVVELITQ 63

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
           ++P+E A+EQVF+ ++  + LKLGQAR  AI++ A A +PV+EY+   IK+AV+G G  D
Sbjct: 64  YQPDEFAIEQVFMARNPDSALKLGQARGAAIVAAACADLPVAEYSARQIKQAVVGNGGAD 123

Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           K Q+  M+  L+  S     DAADALA+A+CHA+ A S
Sbjct: 124 KTQVQHMVMALLNLSKSPQADAADALAVALCHAHSAQS 161


>gi|227538683|ref|ZP_03968732.1| crossover junction endodeoxyribonuclease [Sphingobacterium
           spiritivorum ATCC 33300]
 gi|227241602|gb|EEI91617.1| crossover junction endodeoxyribonuclease [Sphingobacterium
           spiritivorum ATCC 33300]
          Length = 189

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 54/158 (34%), Positives = 89/158 (56%), Gaps = 9/158 (5%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG    G+G++   G  +  +S G I        A +L ++++  + +I+ ++P+
Sbjct: 11  ILGIDPGTVVLGYGLLKETGKKISLISLGVIKMGHLDDHALKLQRIFKKTSALIEEYKPD 70

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+E  F  K+    LKLG+A+ +A+ +     IP+ EY+P  IK++V G G+  K+Q+
Sbjct: 71  CVALEAPFYGKNIQVMLKLGRAQGVAMAAALNHDIPIFEYSPRKIKQSVTGNGNATKEQV 130

Query: 127 HMMLKMLM-----PESFFKGKDAADALAIAVCHAYHAN 159
             MLK L+     PE      DA D LA+AVCH++  N
Sbjct: 131 AAMLKTLLSFNETPEFL----DATDGLAVAVCHSFQQN 164


>gi|237743571|ref|ZP_04574052.1| crossover junction endodeoxyribonuclease ruvC [Fusobacterium sp.
           7_1]
 gi|229433350|gb|EEO43562.1| crossover junction endodeoxyribonuclease ruvC [Fusobacterium sp.
           7_1]
          Length = 190

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 52/151 (34%), Positives = 80/151 (52%), Gaps = 1/151 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R+IGIDPG    G+GI+D   +    V  G I++    S   RL  +Y  +  ++K ++
Sbjct: 1   MRVIGIDPGTAIVGYGIIDYDKNKYSVVDYGVILTSKDLSTEERLEVIYNNMNKILKKYK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           PE  A+E +F  K+    + + QAR + +L      IP+S Y P  +K  + G G  +KK
Sbjct: 61  PEFMAIEDLFYFKNNKTVISVAQARGVILLVGKQNNIPMSNYTPLQVKIGITGYGKAEKK 120

Query: 125 QIHMML-KMLMPESFFKGKDAADALAIAVCH 154
           Q+  M+ K L      +  DAADALAI + H
Sbjct: 121 QVQQMVQKFLGLSEIPRPDDAADALAICITH 151


>gi|294508699|ref|YP_003572758.1| Crossover junction endodeoxyribonuclease RuvC [Salinibacter ruber
           M8]
 gi|294345028|emb|CBH25806.1| Crossover junction endodeoxyribonuclease RuvC [Salinibacter ruber
           M8]
          Length = 179

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 59/151 (39%), Positives = 90/151 (59%), Gaps = 3/151 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+G+DPG R TG+G+VD +  +   V++ TI          RL Q+Y+ L DVI    P+
Sbjct: 3   ILGVDPGSRATGYGLVDPSSGDEHLVAADTIRLADTDDHPTRLKQIYDALVDVIDAHGPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E AVE     ++  + LKLG+A+A A+++     +PV++Y P  +KK+V G G+  KKQ+
Sbjct: 63  EFAVEMPVYGQNPQSMLKLGRAQAAAMMAALNRDLPVAQYTPKEVKKSVTGNGNASKKQV 122

Query: 127 HMMLKMLMP--ESFFKGKDAADALAIAVCHA 155
             M++ ++   E  F   D ADALAIA+CH 
Sbjct: 123 GFMIESILSAGEQTF-AHDTADALAIALCHG 152


>gi|332292054|ref|YP_004430663.1| crossover junction endodeoxyribonuclease RuvC [Krokinobacter
           diaphorus 4H-3-7-5]
 gi|332170140|gb|AEE19395.1| crossover junction endodeoxyribonuclease RuvC [Krokinobacter
           diaphorus 4H-3-7-5]
          Length = 184

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 56/161 (34%), Positives = 89/161 (55%), Gaps = 3/161 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG    G+G++ V G  + F+    ++         +L  ++E    +I  + P+
Sbjct: 7   ILGIDPGTTIMGFGLIKVVGKKMEFMLLNELLLQKYSDPYVKLKLIFERTIQLIDTYHPD 66

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E  F  K+  + LKLG+A+ +A+ +     IP++EY P  IK AV G G+  K+Q+
Sbjct: 67  EIAIEAPFFGKNVQSMLKLGRAQGVAMAAGLSREIPITEYLPKKIKMAVTGNGNASKEQV 126

Query: 127 HMMLKMLMP-ESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
             ML+ L+  ++  K  D+ D LA AVCH Y  NSG  +I 
Sbjct: 127 ARMLQSLLKLKTLPKNLDSTDGLAAAVCHYY--NSGKVEIG 165


>gi|307244296|ref|ZP_07526411.1| crossover junction endodeoxyribonuclease RuvC [Peptostreptococcus
           stomatis DSM 17678]
 gi|306492446|gb|EFM64484.1| crossover junction endodeoxyribonuclease RuvC [Peptostreptococcus
           stomatis DSM 17678]
          Length = 165

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 53/154 (34%), Positives = 83/154 (53%), Gaps = 2/154 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPGL   G+G+V+   +    +  G I +    S   RL ++Y+G+  +   +  +
Sbjct: 3   ILGIDPGLAIIGYGLVEYKNNRFRTIDYGAITTPAGMSTVERLERIYKGMNQLFHMYDID 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E  +E++F NK+    + + QAR + +LS      P  EY P  +K+ V G G  DK Q+
Sbjct: 63  EVGIEELFFNKNVKTAITVAQARGVILLSCQHHAKPTYEYTPLQVKQGVCGYGRADKPQV 122

Query: 127 H-MMLKMLMPESFFKGKDAADALAIAVCHAYHAN 159
             M+   L  +   K  D ADALA+A+CHA H+N
Sbjct: 123 QKMVTSFLNLKEVPKPDDVADALAVAICHA-HSN 155


>gi|295136120|ref|YP_003586796.1| Holliday junction resolvase [Zunongwangia profunda SM-A87]
 gi|294984135|gb|ADF54600.1| Holliday junction resolvase [Zunongwangia profunda SM-A87]
          Length = 182

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 56/156 (35%), Positives = 86/156 (55%), Gaps = 3/156 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG    G+G++ V   N+ F+    +          +L  ++E    +I  + P+
Sbjct: 6   ILGIDPGTTIMGFGLIKVKNKNMEFLQLNELQLKKYDDHYVKLKLIFERTIQLIDTFHPD 65

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E  F  K+  + LKLG+A+ +A+ +     IP++EY P  IK A+ G G+  K+Q+
Sbjct: 66  EIAIEAPFFGKNVQSMLKLGRAQGVAMAAGLSREIPITEYLPKKIKMAITGNGNASKEQV 125

Query: 127 HMMLK-MLMPESFFKGKDAADALAIAVCHAYHANSG 161
             ML+ ML  +S  K  D+ D LA AVCH Y  NSG
Sbjct: 126 AKMLQSMLKLKSLPKNLDSTDGLAAAVCHFY--NSG 159


>gi|289209178|ref|YP_003461244.1| crossover junction endodeoxyribonuclease RuvC [Thioalkalivibrio sp.
           K90mix]
 gi|288944809|gb|ADC72508.1| crossover junction endodeoxyribonuclease RuvC [Thioalkalivibrio sp.
           K90mix]
          Length = 171

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/155 (40%), Positives = 95/155 (61%), Gaps = 1/155 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPG R TG+ +++ A         G ++    +    RL +++ G+ +VI   +
Sbjct: 1   MRILGIDPGSRITGFAVIEYAKGQGRSRGHG-VIRPRSKGFPERLGEIFAGVVEVIGELK 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  A+E VFV ++A + +KLG AR  AI +   A +PV EYAP  IK AV+GVG  DK+
Sbjct: 60  PDVLAIETVFVARNAQSAIKLGHARGAAICAATQAGLPVHEYAPRAIKMAVVGVGSADKE 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHAN 159
           Q+  M++ L+  +     DAADALA+A+CHA+ A 
Sbjct: 120 QVQHMMQQLLRLTEPASSDAADALAVALCHAHTAQ 154


>gi|296126684|ref|YP_003633936.1| crossover junction endodeoxyribonuclease RuvC [Brachyspira
           murdochii DSM 12563]
 gi|296018500|gb|ADG71737.1| crossover junction endodeoxyribonuclease RuvC [Brachyspira
           murdochii DSM 12563]
          Length = 157

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 82/148 (55%), Gaps = 1/148 (0%)

Query: 8   IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEE 67
           +GIDPG  R G+  ++        V+SG I +   Q+   RL  +Y  L ++IK + P +
Sbjct: 4   LGIDPGFARCGYAFIEAKNSAYKIVNSGLIETFSNQNYNQRLSFIYTQLDELIKKYSPSD 63

Query: 68  AAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIH 127
           AA+E++F +K+    +K+ +AR + IL+  L  I  +EY P  +K  + G G+ +K  + 
Sbjct: 64  AAIEELFFSKNTKTAIKVAEARGVIILALTLNNIDFTEYKPKEVKSQITGNGNANKDAMM 123

Query: 128 MMLKMLMPESFFKGKDAADALAIAVCHA 155
            M+ +    +  +  D ADA+AIA+ HA
Sbjct: 124 KMVNLFTGSNIIQ-DDTADAVAIALAHA 150


>gi|311745860|ref|ZP_07719645.1| crossover junction endodeoxyribonuclease RuvC [Algoriphagus sp.
           PR1]
 gi|126576063|gb|EAZ80341.1| crossover junction endodeoxyribonuclease RuvC [Algoriphagus sp.
           PR1]
          Length = 191

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 53/153 (34%), Positives = 91/153 (59%), Gaps = 3/153 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG    G+G++   G     +  G I      +   +L +++E ++ +I+ + P+
Sbjct: 14  ILGIDPGTNVMGYGLIKTEGKKYELLQYGVIHLKKYGTHELKLKKIFERISGIIEEFLPD 73

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALAR-IPVSEYAPNTIKKAVIGVGHGDKKQ 125
             A+E  F   +  + LKLG+A+ +A ++ ALAR IP++EY+P  +K++V G G+  K+Q
Sbjct: 74  SVALEAPFYGVNVQSMLKLGRAQGVA-MAAALAREIPITEYSPKKVKQSVTGNGNASKEQ 132

Query: 126 IHMMLKMLMP-ESFFKGKDAADALAIAVCHAYH 157
           +  ML+ L   +   K  DA DALA+A+CH +H
Sbjct: 133 VAAMLQTLFDLKELPKMLDATDALAVALCHHFH 165


>gi|303235799|ref|ZP_07322406.1| crossover junction endodeoxyribonuclease RuvC [Prevotella disiens
           FB035-09AN]
 gi|302484246|gb|EFL47234.1| crossover junction endodeoxyribonuclease RuvC [Prevotella disiens
           FB035-09AN]
          Length = 192

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 54/156 (34%), Positives = 84/156 (53%), Gaps = 3/156 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG    G+G++   G+    V  G I     +    RL +++E +T +I+ + P+
Sbjct: 12  ILGIDPGTNVMGYGVIQAKGNKAEMVVMGVIDMRKEKDPYLRLGKIFERVTGIIEEYLPD 71

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E  F  K+  + LKLG+A+ +AI +     +P+ EYAP  IK A+ G G   K Q+
Sbjct: 72  EMAIEAPFFGKNIQSMLKLGRAQGVAIAAAIQRDVPIHEYAPLKIKMAITGNGQASKNQV 131

Query: 127 HMMLKMLM---PESFFKGKDAADALAIAVCHAYHAN 159
             ML+ L+    +   +  DA DAL  A CH   +N
Sbjct: 132 AGMLQRLLHLKDDEMPQFMDATDALGAAYCHFLQSN 167


>gi|90022180|ref|YP_528007.1| Holliday junction resolvase [Saccharophagus degradans 2-40]
 gi|122996072|sp|Q21HN4|RUVC_SACD2 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|89951780|gb|ABD81795.1| crossover junction endodeoxyribonuclease RuvC [Saccharophagus
           degradans 2-40]
          Length = 173

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 58/148 (39%), Positives = 93/148 (62%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           ++G+DPG  +TG+G+V+       +++SG I       L  RL  ++E L ++I+ ++P 
Sbjct: 4   VLGVDPGSLKTGFGLVNHVSGRCEYIASGVIRMKSSDELPERLKTIFESLVEIIECYQPS 63

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E+VF+ K A + LKLGQAR  AI++     +PV EY    +K++V+G G  DK Q+
Sbjct: 64  EFAIEKVFMAKSAGSALKLGQARGAAIVAAVTNGLPVGEYEARKVKQSVVGSGAADKSQV 123

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCH 154
             M++ L+  +    +DAADALAIA+CH
Sbjct: 124 QHMVRTLLHLTATPQEDAADALAIALCH 151


>gi|150020930|ref|YP_001306284.1| Holliday junction resolvase [Thermosipho melanesiensis BI429]
 gi|166233307|sp|A6LLU8|RUVC_THEM4 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|149793451|gb|ABR30899.1| crossover junction endodeoxyribonuclease RuvC [Thermosipho
           melanesiensis BI429]
          Length = 157

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 79/130 (60%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++IIGIDPG    G+G+++ +G+ +  ++ G I +    S+  RL  +YE    ++K + 
Sbjct: 1   MKIIGIDPGYGILGYGVLEKSGNKISHITHGVITTDKELSMYKRLQVIYEEFLRLLKEYS 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  A+E +F  K+    +++G+AR + +L+ +   +P+ E+ P  +K  + G GH DKK
Sbjct: 61  PDACAIESLFFYKNVKTAIRVGEARGVILLATSQMDLPLYEFTPYQVKNNITGYGHSDKK 120

Query: 125 QIHMMLKMLM 134
           Q+  M+KML+
Sbjct: 121 QVQKMVKMLL 130


>gi|300870811|ref|YP_003785682.1| crossover junction endodeoxyribonuclease RuvC [Brachyspira
           pilosicoli 95/1000]
 gi|300688510|gb|ADK31181.1| crossover junction endodeoxyribonuclease, RuvC [Brachyspira
           pilosicoli 95/1000]
          Length = 157

 Score = 98.6 bits (244), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 51/148 (34%), Positives = 80/148 (54%), Gaps = 1/148 (0%)

Query: 8   IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEE 67
           +GIDPG  R G+  V+        V+SG I +   +    RL  +Y  L  +IK ++P+ 
Sbjct: 4   LGIDPGFARCGYAFVESKNSEYKIVNSGLIETFSNEEYNQRLSFIYTQLDSLIKQYKPDN 63

Query: 68  AAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIH 127
           A++E++F +K+    +K+ +AR + IL+  L  I   EY P  IK  + G G+ +K  + 
Sbjct: 64  ASIEELFFSKNTKTAIKVAEARGVIILALTLNNIEFREYKPREIKSQITGNGNANKDAVI 123

Query: 128 MMLKMLMPESFFKGKDAADALAIAVCHA 155
            M+  L   S  K  D ADA+AIA+ HA
Sbjct: 124 KMVN-LFTGSNIKQDDTADAVAIALAHA 150


>gi|15835403|ref|NP_297162.1| Holliday junction resolvase [Chlamydia muridarum Nigg]
 gi|270285582|ref|ZP_06194976.1| Holliday junction resolvase [Chlamydia muridarum Nigg]
 gi|270289592|ref|ZP_06195894.1| Holliday junction resolvase [Chlamydia muridarum Weiss]
 gi|301336978|ref|ZP_07225180.1| Holliday junction resolvase [Chlamydia muridarum MopnTet14]
 gi|13431872|sp|Q9PJN9|RUVC_CHLMU RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|7190817|gb|AAF39592.1| Holliday junction resolvase [Chlamydia muridarum Nigg]
          Length = 170

 Score = 98.6 bits (244), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 56/156 (35%), Positives = 92/156 (58%), Gaps = 4/156 (2%)

Query: 7   IIGIDPGLRRTGWGIVDVAGD-NLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           I+GIDPG    G+  + V     +   S G I    +Q+L+ R  QL+  ++ +++   P
Sbjct: 5   IMGIDPGTLVCGYAFIRVENRYQIQPHSFGKIKLSQKQALSHRYRQLFTEISTILQREAP 64

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
           +   +E  +V+K+  +T+KLG AR + +L+ +L  I V EYAPNT KKA +G G+  K+Q
Sbjct: 65  KAVVLETQYVHKNPQSTIKLGMARGVLLLAASLQDISVFEYAPNTAKKAAVGKGNASKQQ 124

Query: 126 IHMML-KMLMPESFF--KGKDAADALAIAVCHAYHA 158
           + +M+ K+L  +       +D ADA A+A+CHA+ A
Sbjct: 125 VQLMVSKLLNIQDLLADDNEDIADAFALAMCHAHLA 160


>gi|238919501|ref|YP_002933016.1| Holliday junction resolvase [Edwardsiella ictaluri 93-146]
 gi|259495687|sp|C5B9T0|RUVC_EDWI9 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|238869070|gb|ACR68781.1| crossover junction endodeoxyribonuclease RuvC, putative
           [Edwardsiella ictaluri 93-146]
          Length = 173

 Score = 98.6 bits (244), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 65/161 (40%), Positives = 98/161 (60%), Gaps = 2/161 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I + V   L  RL  +Y G++++I  + P+
Sbjct: 4   ILGIDPGSRITGYGVIRQQGRQLEYIGSGCIRTAV-DDLPTRLKLVYAGVSEIITQFNPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR  AI++     +PV EYA   IK+ V+G G  +K Q+
Sbjct: 63  CFAIEQVFMAKNADSALKLGQARGAAIVAAVNRDLPVFEYAARQIKQTVVGNGGAEKAQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
             M++ L+        DAADALA+A+ H  H +    +I+S
Sbjct: 123 QHMVRSLLKLPANPQADAADALAVAITHC-HVSQNALRISS 162


>gi|281420104|ref|ZP_06251103.1| crossover junction endodeoxyribonuclease RuvC [Prevotella copri DSM
           18205]
 gi|281405904|gb|EFB36584.1| crossover junction endodeoxyribonuclease RuvC [Prevotella copri DSM
           18205]
          Length = 191

 Score = 98.6 bits (244), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 54/156 (34%), Positives = 84/156 (53%), Gaps = 3/156 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG    G+G++ + G+    V  G I          RL ++++ +T +I ++ P+
Sbjct: 11  ILGIDPGTNVMGYGVIRIIGNKAELVVMGVIDMRKESDPYLRLGKIFDRVTGIIDSYLPD 70

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E  F  K+  + LKLG+A+ +AI +     +P+ EYAP  IK A+ G G   K+Q+
Sbjct: 71  EMAIEAPFFGKNVQSMLKLGRAQGVAIAAAIHHSVPIHEYAPLKIKMAITGQGQASKEQV 130

Query: 127 HMMLKMLM---PESFFKGKDAADALAIAVCHAYHAN 159
             ML+ L+    +   K  DA DAL  A CH    N
Sbjct: 131 AGMLQRLLHIQQDEMPKFMDATDALGAAYCHFLQMN 166


>gi|194335780|ref|YP_002017574.1| crossover junction endodeoxyribonuclease RuvC [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|238693392|sp|B4SDW6|RUVC_PELPB RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|194308257|gb|ACF42957.1| crossover junction endodeoxyribonuclease RuvC [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 191

 Score = 98.6 bits (244), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 61/160 (38%), Positives = 91/160 (56%), Gaps = 11/160 (6%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           ++G+DPG R TG+G++   G     +S G I    R S A R+ Q+Y  L  VI ++ PE
Sbjct: 3   VLGVDPGSRLTGYGVIRQEGTFFTVLSCGVIRLHPRSSHAERIGQIYRELEAVITDYAPE 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALAR-IPVSEYAPNTIKKAVIGVGHGDKKQ 125
             A+E VF++++  + LKLGQ R  A+++ A+ R + + EYAP  +K AV G G   K+Q
Sbjct: 63  CVALETVFLSRNVQSALKLGQVRG-AVIALAMNRNLLLHEYAPREVKSAVTGKGAASKEQ 121

Query: 126 IHMML-KML----MPESFFKGKDAADALAIAVCHAYHANS 160
           +  M+ +ML    +PE F    D  DAL IA+C      S
Sbjct: 122 VAFMVARMLALNPVPEPF----DVTDALGIALCDLLRGGS 157


>gi|32473246|ref|NP_866240.1| crossover junction endodeoxyribonuclease ruvC [Rhodopirellula
           baltica SH 1]
 gi|44888406|sp|Q7US71|RUVC_RHOBA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|32397925|emb|CAD73926.1| crossover junction endodeoxyribonuclease ruvC [Rhodopirellula
           baltica SH 1]
          Length = 178

 Score = 98.6 bits (244), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 58/156 (37%), Positives = 88/156 (56%), Gaps = 2/156 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPGL  TG+ ++   G  LC   +G I S    +L  RL +++ GL++V      +
Sbjct: 16  ILGIDPGLNTTGYAVISREGPRLCLREAGVIKSRRSDTLPERLREIHVGLSEVFAVHAVD 75

Query: 67  EAAVEQVFVNKDAVAT-LKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
             A+EQ+F + D   T + +G AR +  L+ A A +PV  Y P  +KK + G G   K Q
Sbjct: 76  LMALEQLFSHYDRPRTAILMGHARGVICLAAASAGVPVEHYEPTRVKKVMTGNGRAPKSQ 135

Query: 126 IHMMLKM-LMPESFFKGKDAADALAIAVCHAYHANS 160
           I + +KM L  +S  +  D ADA+AI++C  Y AN+
Sbjct: 136 IQLAVKMQLNLQSVPEPADVADAMAISLCGHYLANN 171


>gi|291617755|ref|YP_003520497.1| RuvC [Pantoea ananatis LMG 20103]
 gi|291152785|gb|ADD77369.1| RuvC [Pantoea ananatis LMG 20103]
 gi|327394174|dbj|BAK11596.1| Crossover junction endodeoxyribonuclease RuvC [Pantoea ananatis
           AJ13355]
          Length = 175

 Score = 98.6 bits (244), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 64/157 (40%), Positives = 96/157 (61%), Gaps = 7/157 (4%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQS---LAFRLCQLYEGLTDVIKNW 63
           I+GIDPG R TG+G++   G  L ++ SG    C+R +   L  RL  +Y G+ ++I  +
Sbjct: 4   ILGIDPGSRVTGYGVIRQTGRQLTYLGSG----CIRTNTTELPARLKLIYAGVCEIITQF 59

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P+  A+EQVF+ K+A + LKLGQAR  AI++     +PV EYA   +K+ V+G G  +K
Sbjct: 60  SPDFFAIEQVFMAKNADSALKLGQARGAAIVAAVNHDLPVFEYAARQVKQTVVGTGGAEK 119

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
            Q+  M+K L+  +     DAADALAIA+ H + A +
Sbjct: 120 SQVQHMVKSLLKLAANPQADAADALAIAITHCHVAQN 156


>gi|317048521|ref|YP_004116169.1| crossover junction endodeoxyribonuclease RuvC [Pantoea sp. At-9b]
 gi|316950138|gb|ADU69613.1| crossover junction endodeoxyribonuclease RuvC [Pantoea sp. At-9b]
          Length = 175

 Score = 98.2 bits (243), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 62/150 (41%), Positives = 93/150 (62%), Gaps = 1/150 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I + V   L  RL  +Y G++++I  + P+
Sbjct: 4   ILGIDPGSRVTGYGVIRQTGRQLSYLGSGCIRTNV-TDLPSRLKLIYAGVSEIITQFSPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR  AI++     +PV EYA   +K+ V G+G  +K Q+
Sbjct: 63  FFAIEQVFMAKNADSALKLGQARGAAIVAAVNLDLPVFEYAARQVKQTVTGIGSAEKSQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAY 156
             M++ L+        DAADALAIA+ H +
Sbjct: 123 QHMVRTLLKLPANPQADAADALAIAITHCH 152


>gi|86141893|ref|ZP_01060417.1| Holliday junction resolvase [Leeuwenhoekiella blandensis MED217]
 gi|85831456|gb|EAQ49912.1| Holliday junction resolvase [Leeuwenhoekiella blandensis MED217]
          Length = 184

 Score = 98.2 bits (243), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 55/162 (33%), Positives = 89/162 (54%), Gaps = 3/162 (1%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M+    I+GIDPG    G+G++ V    + F+    ++         +L  ++E   ++I
Sbjct: 1   MKSEKIILGIDPGTTIMGFGLIKVVDKKMQFMQLNELMLKKYDDPYVKLKLIFERTVELI 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             + P+E A+E  F  K+  + LKLG+A+ +A+ +     IPV+EY P  IK A+ G G+
Sbjct: 61  DTYHPDEMAIEAPFFGKNVQSMLKLGRAQGVAMAAGLSREIPVTEYLPKKIKMAITGNGN 120

Query: 121 GDKKQIHMMLKMLMP-ESFFKGKDAADALAIAVCHAYHANSG 161
             K+Q+  ML+ L+  ++  K  D+ D LA AVCH  H NSG
Sbjct: 121 ASKEQVAKMLQSLLGLKTLPKNLDSTDGLAAAVCH--HFNSG 160


>gi|304440230|ref|ZP_07400120.1| crossover junction endoribonuclease subunit C [Peptoniphilus
           duerdenii ATCC BAA-1640]
 gi|304371279|gb|EFM24895.1| crossover junction endoribonuclease subunit C [Peptoniphilus
           duerdenii ATCC BAA-1640]
          Length = 164

 Score = 98.2 bits (243), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 42/128 (32%), Positives = 78/128 (60%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPGL   G+G+++V G+   +++ G I +        RL ++Y+ +TD++  ++PE
Sbjct: 3   ILGIDPGLALVGYGVIEVIGNKYKYLTHGVIKTEAGVPFQNRLKKIYKEMTDIVIKYKPE 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           + A E++F NK+    + + QAR + +L  +     V EY P  +K+A++G G  +K+Q+
Sbjct: 63  DIAFEELFFNKNIKTAISVAQARGVEVLVASTFTDNVYEYTPLQVKQAIVGYGRAEKRQV 122

Query: 127 HMMLKMLM 134
             M KM++
Sbjct: 123 QEMTKMIL 130


>gi|284048864|ref|YP_003399203.1| crossover junction endodeoxyribonuclease RuvC [Acidaminococcus
           fermentans DSM 20731]
 gi|283953085|gb|ADB47888.1| crossover junction endodeoxyribonuclease RuvC [Acidaminococcus
           fermentans DSM 20731]
          Length = 165

 Score = 98.2 bits (243), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 53/147 (36%), Positives = 85/147 (57%), Gaps = 1/147 (0%)

Query: 8   IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEE 67
           +GIDPG    G+G+V +    L  V  G + +        RL ++YE LTD+I  + P+ 
Sbjct: 4   LGIDPGTAICGYGLVRLERSRLIPVHYGAVFTDKDMLPERRLNKIYEELTDLIDRYHPDF 63

Query: 68  AAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI- 126
            +VE++F N++    + +G+AR + +L+ A A IPV  Y P  +K+A+ G G  +K+Q+ 
Sbjct: 64  MSVEKLFFNRNVTTAIAVGEARGVILLTAARAGIPVYGYTPIQVKQAITGTGRANKEQVT 123

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVC 153
           +M+ K+L  E   K  D ADALAI + 
Sbjct: 124 YMVQKLLHIEEKPKPDDVADALAIGIT 150


>gi|302389939|ref|YP_003825760.1| crossover junction endodeoxyribonuclease RuvC [Thermosediminibacter
           oceani DSM 16646]
 gi|302200567|gb|ADL08137.1| crossover junction endodeoxyribonuclease RuvC [Thermosediminibacter
           oceani DSM 16646]
          Length = 177

 Score = 98.2 bits (243), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 47/128 (36%), Positives = 80/128 (62%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG+  +G+G+V   G     +  G + +    S+  RL  +YEG  ++I+N++P 
Sbjct: 13  IMGIDPGIAISGYGVVCCNGTEFEVLDFGVLKTESSLSVPERLKAIYEGYLNLIENYKPA 72

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             AVE++F NK+A   + +GQAR +A+L+ A   + V EY P  +K+AV+G G  +K Q+
Sbjct: 73  AIAVEELFFNKNAKTAIAVGQARGVALLAAASRNVKVYEYTPLQVKQAVVGYGRAEKMQV 132

Query: 127 HMMLKMLM 134
             M+++L+
Sbjct: 133 QEMVRVLL 140


>gi|305665346|ref|YP_003861633.1| Holliday junction resolvase [Maribacter sp. HTCC2170]
 gi|88710101|gb|EAR02333.1| Holliday junction resolvase [Maribacter sp. HTCC2170]
          Length = 184

 Score = 98.2 bits (243), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 53/152 (34%), Positives = 85/152 (55%), Gaps = 1/152 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG    G+GI+ V    + FV    ++    +    +L  ++E   ++I  + P+
Sbjct: 7   ILGIDPGTTIMGFGIIKVVNKQMKFVQMNELLLQKYKDPYTKLKLIFERTIELIDTYHPD 66

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E  F  K+  + LKLG+A+ +A+ +     IP++EY P  IK A+ G G+  K+Q+
Sbjct: 67  EIAIEAPFFGKNVQSMLKLGRAQGVAMAAGLSREIPITEYLPKKIKMAITGNGNASKEQV 126

Query: 127 HMMLK-MLMPESFFKGKDAADALAIAVCHAYH 157
             ML+  L  +S  K  D+ D LA AVCH Y+
Sbjct: 127 AKMLQSTLGLKSLPKNLDSTDGLAAAVCHFYN 158


>gi|304396236|ref|ZP_07378118.1| crossover junction endodeoxyribonuclease RuvC [Pantoea sp. aB]
 gi|304356605|gb|EFM20970.1| crossover junction endodeoxyribonuclease RuvC [Pantoea sp. aB]
          Length = 175

 Score = 98.2 bits (243), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 63/157 (40%), Positives = 96/157 (61%), Gaps = 7/157 (4%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQS---LAFRLCQLYEGLTDVIKNW 63
           I+GIDPG R TG+G++   G  L ++ SG    C+R +   L  RL  +Y G+ ++I  +
Sbjct: 4   ILGIDPGSRITGYGVIRQTGRQLTYLGSG----CIRTNTTELPARLKLIYAGVCEIITQF 59

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P+  A+EQVF+ K+A + LKLGQAR  AI++     +PV EYA   +K+ V+G+G  +K
Sbjct: 60  SPDFFAIEQVFMAKNADSALKLGQARGAAIVAAVNHDLPVFEYAARQVKQTVVGIGSAEK 119

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
            Q+  M++ L+        DAADALAIA+ H + A +
Sbjct: 120 SQVQHMVRTLLKLPANPQADAADALAIAITHCHVAQN 156


>gi|255994630|ref|ZP_05427765.1| crossover junction endodeoxyribonuclease RuvC [Eubacterium saphenum
           ATCC 49989]
 gi|255993343|gb|EEU03432.1| crossover junction endodeoxyribonuclease RuvC [Eubacterium saphenum
           ATCC 49989]
          Length = 159

 Score = 98.2 bits (243), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 60/158 (37%), Positives = 99/158 (62%), Gaps = 4/158 (2%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPG    G+G++D  G++   V  G I +   + L  RL ++   L+ +++ +R
Sbjct: 1   MRILGIDPGYAIMGYGLIDKIGNSFKPVDYGVIKTKAGEPLPERLLKIRMELSSIVEKYR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+E AVE++F N ++   + + ++R +A++  A+  I V+EY P  +K+ V+G G   K 
Sbjct: 61  PDEMAVEELFFNTNSKTVIHVAESRGVALVEGAVRGINVNEYTPLQVKQGVVGYGRAQKV 120

Query: 125 QIHMMLKMLMP-ESFFKGKDAADALAIAVCHAYHANSG 161
           Q+  M+K+L+  ES  K  DAADALA+A+C   HANSG
Sbjct: 121 QVMQMVKVLLNLESVPKPDDAADALAVAIC---HANSG 155


>gi|225620451|ref|YP_002721708.1| crossover junction endodeoxyribonuclease [Brachyspira
           hyodysenteriae WA1]
 gi|254767461|sp|C0R1L6|RUVC_BRAHW RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|225215270|gb|ACN84004.1| crossover junction endodeoxyribonuclease [Brachyspira
           hyodysenteriae WA1]
          Length = 160

 Score = 98.2 bits (243), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 79/148 (53%), Gaps = 1/148 (0%)

Query: 8   IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEE 67
           +GIDPG  R G+  ++        V SG I +   Q    RL  +Y  L ++IK ++P  
Sbjct: 4   LGIDPGFARCGYAFIEAKNSAYKIVDSGLIETFQNQEYNQRLSFIYTQLDELIKKYKPNN 63

Query: 68  AAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIH 127
           AA+E++F +K+    +K+ +AR + IL+  L  I   EY P  +K  + G G+ +K  + 
Sbjct: 64  AAIEELFFSKNTKTAIKVAEARGVIILALTLNNIEFQEYKPKEVKSQITGNGNANKDAMM 123

Query: 128 MMLKMLMPESFFKGKDAADALAIAVCHA 155
            M+ +    +  +  D ADA+AIA+ HA
Sbjct: 124 KMVNLFTGSNIIQD-DTADAVAIALAHA 150


>gi|323143600|ref|ZP_08078277.1| crossover junction endodeoxyribonuclease RuvC [Succinatimonas
           hippei YIT 12066]
 gi|322416663|gb|EFY07320.1| crossover junction endodeoxyribonuclease RuvC [Succinatimonas
           hippei YIT 12066]
          Length = 177

 Score = 98.2 bits (243), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 56/150 (37%), Positives = 95/150 (63%), Gaps = 1/150 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R+TG+G++ + G  L ++ SG I +    +L  RL  ++  ++ +I+ + P 
Sbjct: 5   ILGIDPGSRKTGYGVIKIQGSALVYLGSGCI-NAGSGALYKRLQTIFVAVSTIIEQFSPT 63

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+E+ F++K+  +T+KL +ARA A+++ + A + + EY P  IK+AV+G G   K Q+
Sbjct: 64  VFAIEETFLSKNVQSTVKLSEARAAAMIAGSNAGLEIFEYTPRQIKQAVVGYGAAQKHQV 123

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAY 156
             M++ ++  S     DAADALA A+CH Y
Sbjct: 124 QYMVERILKLSGTPQADAADALACAICHGY 153


>gi|297170982|gb|ADI21997.1| holliday junction resolvasome, endonuclease subunit [uncultured
           myxobacterium HF0200_01L06]
          Length = 181

 Score = 98.2 bits (243), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 54/130 (41%), Positives = 77/130 (59%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RIIGIDPG   TGWG+V++    +  V+ GT+      SLA RL  L+ GL DVI+   
Sbjct: 1   MRIIGIDPGSVATGWGLVEIVEGRMRHVAHGTVRPPRGGSLASRLAFLHRGLLDVIERNE 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ A VE+VFV+++  + L LG AR  A+ +     I V E +   IK+AV+G G   K 
Sbjct: 61  PDRAVVERVFVSRNPRSALVLGHARGTALAALGGFSIGVEELSAREIKQAVVGTGSASKS 120

Query: 125 QIHMMLKMLM 134
           Q+  M+K L+
Sbjct: 121 QVQGMVKKLL 130


>gi|34541016|ref|NP_905495.1| Holliday junction resolvase [Porphyromonas gingivalis W83]
 gi|44888374|sp|Q7MUZ6|RUVC_PORGI RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|34397331|gb|AAQ66394.1| crossover junction endodeoxyribonuclease RuvC [Porphyromonas
           gingivalis W83]
          Length = 189

 Score = 98.2 bits (243), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 57/157 (36%), Positives = 94/157 (59%), Gaps = 5/157 (3%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+G+DPG    G+G++ V G+    ++ G I      +   RL ++++ +T +I  + P+
Sbjct: 8   IMGVDPGTILMGYGMLHVVGNTPRLMAMGVIRLEKFDNHYIRLKRIFDRITGLIDEFLPD 67

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALAR-IPVSEYAPNTIKKAVIGVGHGDKKQ 125
           E A+E  F  K+  + LKLG+A+ +A ++ ALAR IP++EYAP  IK+A+ G G+  K+Q
Sbjct: 68  EMAIEAPFFGKNVQSMLKLGRAQGVA-MAAALARDIPITEYAPMRIKQAITGNGNASKEQ 126

Query: 126 IHMMLK--MLMP-ESFFKGKDAADALAIAVCHAYHAN 159
           +  ML+  + +P E      DA D LA AVCH +  +
Sbjct: 127 VAGMLQRYLRIPDEQMLPEMDATDGLAAAVCHFFQTS 163


>gi|308187174|ref|YP_003931305.1| crossover junction endodeoxyribonuclease [Pantoea vagans C9-1]
 gi|308057684|gb|ADO09856.1| crossover junction endodeoxyribonuclease [Pantoea vagans C9-1]
          Length = 175

 Score = 98.2 bits (243), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 63/157 (40%), Positives = 96/157 (61%), Gaps = 7/157 (4%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQS---LAFRLCQLYEGLTDVIKNW 63
           I+GIDPG R TG+G++   G  L ++ SG    C+R +   L  RL  +Y G+ ++I  +
Sbjct: 4   ILGIDPGSRITGYGVIRQTGRQLTYLGSG----CIRTNTPELPARLKLIYAGVCEIITQF 59

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P+  A+EQVF+ K+A + LKLGQAR  AI++     +PV EYA   +K+ V+G+G  +K
Sbjct: 60  SPDFFAIEQVFMAKNADSALKLGQARGAAIVAAVNHDLPVFEYAARQVKQTVVGIGSAEK 119

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
            Q+  M++ L+        DAADALAIA+ H + A +
Sbjct: 120 SQVQHMVRTLLKLPANPQADAADALAIAITHCHVAQN 156


>gi|332982457|ref|YP_004463898.1| crossover junction endodeoxyribonuclease RuvC [Mahella
           australiensis 50-1 BON]
 gi|332700135|gb|AEE97076.1| crossover junction endodeoxyribonuclease RuvC [Mahella
           australiensis 50-1 BON]
          Length = 162

 Score = 97.8 bits (242), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 48/128 (37%), Positives = 74/128 (57%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           ++GIDPGL   G+G VD   + L  +  G + +     L  RL  +Y+ +T +I+ + P 
Sbjct: 3   VLGIDPGLATLGYGAVDYDKNKLKLIDYGVVTTQPDMPLPQRLKSIYDDVTALIERYEPR 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             AVE++F NK+A   L +G AR +AIL+ A   +PV EY P  IK+ + G G   K Q+
Sbjct: 63  ACAVEELFFNKNAKTALTIGHARGVAILAAANNAVPVYEYTPLQIKQGITGYGMAQKLQV 122

Query: 127 HMMLKMLM 134
             M+K+L+
Sbjct: 123 QRMVKLLL 130


>gi|89889363|ref|ZP_01200874.1| crossover junction endodeoxyribonuclease ruvC [Flavobacteria
           bacterium BBFL7]
 gi|89517636|gb|EAS20292.1| crossover junction endodeoxyribonuclease ruvC [Flavobacteria
           bacterium BBFL7]
          Length = 184

 Score = 97.8 bits (242), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 55/161 (34%), Positives = 89/161 (55%), Gaps = 3/161 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG    G+G++ V G+ + F+    +          +L +++E   ++I    P+
Sbjct: 7   ILGIDPGTALMGFGVIKVVGNKMSFLQMNELDLRKYTDHYVKLRKIFERTIELIDTHHPD 66

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E  F  K+  + LKLG+A+ +A+ +     IPV+EYAP  IK+++ G G   K+Q+
Sbjct: 67  EIALEAPFFGKNVQSMLKLGRAQGVAMAAGLSRDIPVTEYAPRKIKQSITGKGTASKEQV 126

Query: 127 HMMLKMLMP-ESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
             ML+ L+  +   K  D  D LA AVCH Y  NSG  ++ 
Sbjct: 127 AKMLQNLLGFKEMPKNLDMTDGLAAAVCHFY--NSGRIEVG 165


>gi|328948461|ref|YP_004365798.1| Crossover junction endodeoxyribonuclease ruvC [Treponema
           succinifaciens DSM 2489]
 gi|328448785|gb|AEB14501.1| Crossover junction endodeoxyribonuclease ruvC [Treponema
           succinifaciens DSM 2489]
          Length = 161

 Score = 97.8 bits (242), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 56/160 (35%), Positives = 84/160 (52%), Gaps = 8/160 (5%)

Query: 3   KSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
           K  RIIGIDPGL  TG+GI+D     +  VS G I +    S   RL  +Y  L  ++  
Sbjct: 2   KERRIIGIDPGLAHTGFGIIDCENSRISLVSYGVIETSSNDSHEVRLFYIYNKLLAILNE 61

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
           +RP EA +E +F  ++  + L + +A+ +  L      IP+  Y+PN IK AV G    D
Sbjct: 62  FRPTEAEMETLFFARNTTSALAVAEAKGVVNLCLVQQAIPIFMYSPNQIKCAVTGTKTAD 121

Query: 123 K----KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHA 158
           K    + + ++L +  P    +   AADALA A+ H +H+
Sbjct: 122 KDTVARYVQLLLNLKQPP---RPDHAADALAGAITH-FHS 157


>gi|317503186|ref|ZP_07961247.1| crossover junction endoribonuclease subunit C [Prevotella salivae
           DSM 15606]
 gi|315665689|gb|EFV05295.1| crossover junction endoribonuclease subunit C [Prevotella salivae
           DSM 15606]
          Length = 203

 Score = 97.8 bits (242), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 83/151 (54%), Gaps = 3/151 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG    G+G++ V G+     + G I          RL  ++E +T +I+++ P+
Sbjct: 10  ILGIDPGTNLMGYGVLRVQGNRAKMEAMGVIDLRKMPDPYLRLGHIFERVTGIIESYLPD 69

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E  F  K+  + LKLG+A+ +AI +     IP+ EYAP  IK A+ G G   K+Q+
Sbjct: 70  ELAIEAPFFGKNVQSMLKLGRAQGVAIAAAIHRDIPIHEYAPLKIKMAITGQGQSSKEQV 129

Query: 127 HMMLKM---LMPESFFKGKDAADALAIAVCH 154
             ML+    L  E   +  DA DALA A CH
Sbjct: 130 AGMLQRVLNLKKEEMPRFMDATDALAAAYCH 160


>gi|327402181|ref|YP_004343019.1| Crossover junction endodeoxyribonuclease ruvC [Fluviicola taffensis
           DSM 16823]
 gi|327317689|gb|AEA42181.1| Crossover junction endodeoxyribonuclease ruvC [Fluviicola taffensis
           DSM 16823]
          Length = 185

 Score = 97.8 bits (242), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 51/156 (32%), Positives = 88/156 (56%), Gaps = 1/156 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG    G+G++ + G  +  ++ G I      +   +L ++++ +  +++ ++P+
Sbjct: 7   ILGIDPGTTVLGYGLIHIKGTKIEMLNFGIIQLNKLDNQPDKLKRIFDRIDGLMEEYKPD 66

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E  F  K+  + LKLG+A+ +AI +     IP  EY P  IK+A+ G G+  K+Q+
Sbjct: 67  EMAIEAPFFGKNVQSMLKLGRAQGVAIAASLRRNIPYEEYTPKRIKQAITGNGNASKEQV 126

Query: 127 HMMLKMLMP-ESFFKGKDAADALAIAVCHAYHANSG 161
             ML+ L+  +   K  DA D LA AVCH +    G
Sbjct: 127 AAMLQTLLKFDEIPKYLDATDGLAAAVCHHFSKGIG 162


>gi|269138789|ref|YP_003295490.1| holliday junction resolvasome, endonuclease subunit [Edwardsiella
           tarda EIB202]
 gi|267984450|gb|ACY84279.1| holliday junction resolvasome, endonuclease subunit [Edwardsiella
           tarda EIB202]
 gi|304558781|gb|ADM41445.1| Crossover junction endodeoxyribonuclease RuvC [Edwardsiella tarda
           FL6-60]
          Length = 173

 Score = 97.8 bits (242), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 65/161 (40%), Positives = 98/161 (60%), Gaps = 2/161 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I + V   L  RL  +Y G++++I  + P+
Sbjct: 4   ILGIDPGSRITGYGVIRQQGRQLEYIGSGCIRTGV-DDLPTRLKLVYAGVSEIITQFNPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR  AI++     +PV EYA   IK+ V+G G  +K Q+
Sbjct: 63  CFAIEQVFMAKNADSALKLGQARGAAIVAAVNRDLPVFEYAARQIKQTVVGNGGAEKAQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
             M++ L+        DAADALA+A+ H  H +    +I+S
Sbjct: 123 QHMVRSLLKLPANPQADAADALAVAITHC-HVSQNALRISS 162


>gi|325269874|ref|ZP_08136484.1| crossover junction endoribonuclease subunit C [Prevotella
           multiformis DSM 16608]
 gi|324987847|gb|EGC19820.1| crossover junction endoribonuclease subunit C [Prevotella
           multiformis DSM 16608]
          Length = 191

 Score = 97.8 bits (242), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 54/156 (34%), Positives = 87/156 (55%), Gaps = 3/156 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           ++GIDPG    G+G++ V+G+    V  G I     + +  RL ++++ +T +I  + P+
Sbjct: 12  LLGIDPGTNVMGYGVLRVSGNKAELVVMGVIDMRKERDVYLRLGKIFDRVTGIIDEFLPD 71

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E  F  K+  + LKLG+A+ +AI +     +P+SEYAP  IK A+ G G   K+Q+
Sbjct: 72  ELAIEAPFFGKNVQSMLKLGRAQGVAIAAAIHHDVPISEYAPLKIKLAITGNGSASKEQV 131

Query: 127 HMMLKMLM---PESFFKGKDAADALAIAVCHAYHAN 159
             ML+ L+    +      DA DA+A A CH    N
Sbjct: 132 AGMLQKLLHLRDDQMPHFMDATDAVAAAYCHFLQMN 167


>gi|299142645|ref|ZP_07035775.1| crossover junction endodeoxyribonuclease RuvC [Prevotella oris
           C735]
 gi|298575860|gb|EFI47736.1| crossover junction endodeoxyribonuclease RuvC [Prevotella oris
           C735]
          Length = 205

 Score = 97.8 bits (242), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 54/151 (35%), Positives = 84/151 (55%), Gaps = 3/151 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG    G+G++ V G+     + G I          RL  ++E +T +I+++ P+
Sbjct: 10  ILGIDPGTNVMGYGVLRVNGNKAKMEAMGVIDLRKMHDPYLRLGHIFERVTGIIESYLPD 69

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E  F  K+  + LKLG+A+ +AI +     +P+ EYAP  IK A+ G G   K+Q+
Sbjct: 70  ELAIEAPFFGKNVQSMLKLGRAQGVAIAAAIRRDVPIHEYAPLKIKMAITGQGQASKEQV 129

Query: 127 HMMLKMLM---PESFFKGKDAADALAIAVCH 154
             ML+ ++    E   +  DA DALA A CH
Sbjct: 130 AGMLQRVLHLEEEDMPRFMDATDALAAAYCH 160


>gi|330444139|ref|YP_004377125.1| crossover junction endodeoxyribonuclease RuvC [Chlamydophila
           pecorum E58]
 gi|328807249|gb|AEB41422.1| crossover junction endodeoxyribonuclease RuvC [Chlamydophila
           pecorum E58]
          Length = 168

 Score = 97.8 bits (242), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 58/154 (37%), Positives = 92/154 (59%), Gaps = 4/154 (2%)

Query: 7   IIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           I+G+DPG    G+ I+ V A   L   S G +    +  L+ R  +L+  ++ V+++  P
Sbjct: 5   IMGVDPGTIAAGYAILRVEARYQLSAHSYGVVRLSPKLLLSQRYKKLFLEISKVLEDVSP 64

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
           +   +E  FV+K+  +T+KLG AR + +L+ AL  IP+ EY PN  KKAV+G G   K+Q
Sbjct: 65  DVLVLETQFVSKNPQSTIKLGMARGVVLLAAALKEIPIVEYTPNVAKKAVVGRGGASKQQ 124

Query: 126 IHMML-KML-MPESFFKG-KDAADALAIAVCHAY 156
           + +M+ KML +PE      +D ADA A+A+CH +
Sbjct: 125 VQLMVSKMLGLPELVQPDCEDIADAFALAICHTH 158


>gi|331007230|ref|ZP_08330437.1| Crossover junction endodeoxyribonuclease RuvC [gamma
           proteobacterium IMCC1989]
 gi|330418946|gb|EGG93405.1| Crossover junction endodeoxyribonuclease RuvC [gamma
           proteobacterium IMCC1989]
          Length = 172

 Score = 97.8 bits (242), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 59/149 (39%), Positives = 96/149 (64%), Gaps = 1/149 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R+TG+G+++       +V+SG ++     +L  RL  ++  + +VI+ + P+
Sbjct: 4   ILGIDPGSRKTGFGVINNINGRCEYVASG-VIRLKNDTLPERLKVIFHSVCEVIEEYCPQ 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           + A+EQVF+ K+A + L LGQAR  AI++     + V+EY    +K++V+G G  DK Q+
Sbjct: 63  QVAIEQVFMAKNANSALILGQARGAAIVAAVSHDLEVAEYEAKKVKQSVVGNGGADKTQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHA 155
             M+K L+  S    +DAADALA+A+CHA
Sbjct: 123 QHMVKQLLKLSGIPQEDAADALAVALCHA 151


>gi|317154310|ref|YP_004122358.1| crossover junction endodeoxyribonuclease RuvC [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316944561|gb|ADU63612.1| crossover junction endodeoxyribonuclease RuvC [Desulfovibrio
           aespoeensis Aspo-2]
          Length = 168

 Score = 97.4 bits (241), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 62/160 (38%), Positives = 91/160 (56%), Gaps = 13/160 (8%)

Query: 2   RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           + S+ +IG+DPG R TG+GIV         V +GTI +   + +  RL  +Y  L ++I 
Sbjct: 3   QDSVVVIGLDPGSRVTGYGIVRECSGQAELVVTGTIRTPAGKDMGTRLGVIYTRLAELIT 62

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
              P EAA+E VFV K+  + LKLGQAR  A+ + A   + V+EY P+ +KK ++GVG  
Sbjct: 63  THCPAEAAIENVFVAKNPSSALKLGQARGAAMAACATHGLSVAEYEPSKVKKNLVGVGGA 122

Query: 122 DKKQIHMMLKMLM-------PESFFKGKDAADALAIAVCH 154
            K Q+  M+   +       PE      DA+DALA+A+CH
Sbjct: 123 PKDQVAFMVARCLGIRKPDWPE------DASDALAVAICH 156


>gi|33861610|ref|NP_893171.1| crossover junction endodeoxyribonuclease RuvC [Prochlorococcus
           marinus subsp. pastoris str. CCMP1986]
 gi|44888409|sp|Q7V132|RUVC_PROMP RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|33634187|emb|CAE19513.1| Crossover junction endodeoxyribonuclease RuvC [Prochlorococcus
           marinus subsp. pastoris str. CCMP1986]
          Length = 157

 Score = 97.4 bits (241), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 86/151 (56%), Gaps = 2/151 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RIIGIDPGL R G+GI+++  +   F+  G I +   +    RL +++  L  +I  W+
Sbjct: 1   MRIIGIDPGLGRVGYGIIEIQNEKKIFLDCGVIETNKNKGEGDRLYEIFNDLNTLIDQWK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ AAVE+ F  + +  T+ + QAR + ++  A   I VSEYAP+ +K  + G G   KK
Sbjct: 61  PDIAAVEKFFFYRSS-TTISVVQARGVIMMVFAFKSIKVSEYAPSQVKLTIAGSGKASKK 119

Query: 125 Q-IHMMLKMLMPESFFKGKDAADALAIAVCH 154
           + I  ++  L      K  D+ADALAIA+  
Sbjct: 120 EVIEAVMYNLNLTRAPKPDDSADALAIALTK 150


>gi|104783074|ref|YP_609572.1| Holliday junction resolvase [Pseudomonas entomophila L48]
 gi|123255378|sp|Q1I6E7|RUVC_PSEE4 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|95112061|emb|CAK16788.1| holliday junction nuclease [Pseudomonas entomophila L48]
          Length = 174

 Score = 97.4 bits (241), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 61/157 (38%), Positives = 99/157 (63%), Gaps = 7/157 (4%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQ---SLAFRLCQLYEGLTDVIKNW 63
           I+GIDPG R TG+G+V        +V+SG    C+R     L  RL  ++ G++++I+  
Sbjct: 4   ILGIDPGSRITGFGVVRQTARGCEYVASG----CIRTGGGELHERLQIVFRGVSEIIRQH 59

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P    +E+VF+ ++A + LKLGQAR  AI++ A A + ++EY+ + +K+AV G G  +K
Sbjct: 60  GPVTMGIERVFMARNADSALKLGQARGAAIVAAAEAGLEIAEYSASQVKQAVAGTGGANK 119

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           +Q+ MM+  L+  +     DA+DALAIA+CHA+  +S
Sbjct: 120 EQVMMMVMHLLKLTQKPQIDASDALAIALCHAHTRSS 156


>gi|332161517|ref|YP_004298094.1| Holliday junction resolvase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318605499|emb|CBY26997.1| crossover junction endodeoxyribonuclease RuvC [Yersinia
           enterocolitica subsp. palearctica Y11]
 gi|325665747|gb|ADZ42391.1| Holliday junction resolvase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330860792|emb|CBX71079.1| crossover junction endodeoxyribonuclease ruvC [Yersinia
           enterocolitica W22703]
          Length = 173

 Score = 97.4 bits (241), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 60/150 (40%), Positives = 93/150 (62%), Gaps = 1/150 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           ++GIDPG R TG+G++   G  L ++ SG I + V   +  RL  +Y G+T++I  ++P+
Sbjct: 4   VLGIDPGSRVTGYGVIRQQGRQLTYLGSGCIRTVV-DDMPTRLKLIYAGVTEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+  + LKLGQAR  AI++     +PV EYA   +K+ V+G G  +K Q+
Sbjct: 63  FFAIEQVFMAKNPDSALKLGQARGAAIVAAVNLNLPVFEYAARQVKQTVVGTGAAEKSQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAY 156
             M++ L+        DAADALAIA+ H +
Sbjct: 123 QHMVRSLLKLPANPQADAADALAIAITHCH 152


>gi|281425236|ref|ZP_06256149.1| crossover junction endodeoxyribonuclease RuvC [Prevotella oris
           F0302]
 gi|281400702|gb|EFB31533.1| crossover junction endodeoxyribonuclease RuvC [Prevotella oris
           F0302]
          Length = 205

 Score = 97.4 bits (241), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 54/151 (35%), Positives = 84/151 (55%), Gaps = 3/151 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG    G+G++ V G+     + G I          RL  ++E +T +I+++ P+
Sbjct: 10  ILGIDPGTNVMGYGVLRVNGNKAKMEAMGVIDLRKMHDPYLRLGHIFERVTGIIESYLPD 69

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E  F  K+  + LKLG+A+ +AI +     +P+ EYAP  IK A+ G G   K+Q+
Sbjct: 70  ELAIEAPFFGKNVQSMLKLGRAQGVAIAAAIRRDVPIHEYAPLKIKMAITGQGQASKEQV 129

Query: 127 HMMLKMLM---PESFFKGKDAADALAIAVCH 154
             ML+ ++    E   +  DA DALA A CH
Sbjct: 130 AGMLQRVLHLEEEDMPRFMDATDALAAAYCH 160


>gi|330996975|ref|ZP_08320840.1| crossover junction endodeoxyribonuclease RuvC [Paraprevotella
           xylaniphila YIT 11841]
 gi|329572049|gb|EGG53720.1| crossover junction endodeoxyribonuclease RuvC [Paraprevotella
           xylaniphila YIT 11841]
          Length = 192

 Score = 97.4 bits (241), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 53/151 (35%), Positives = 83/151 (54%), Gaps = 3/151 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG    G+G++ V G+     + G I          +L +++E +T +I+++ P+
Sbjct: 11  ILGIDPGTNLMGYGVLRVTGNKAVMETMGIIDLRKYTGPYLKLGRIFERVTGIIESYLPD 70

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E  F  K+  + LKLG+A+ +AI +     IP++EYAP  IK A+ G G   K+Q+
Sbjct: 71  EMAIEAPFFGKNVQSMLKLGRAQGVAIAAAIHRDIPITEYAPLKIKMAITGNGQASKEQV 130

Query: 127 HMMLKMLM---PESFFKGKDAADALAIAVCH 154
             ML  ++    E      DA D LA A CH
Sbjct: 131 AGMLTRMLHIREEDMLPYMDATDGLAAAYCH 161


>gi|294635833|ref|ZP_06714288.1| crossover junction endodeoxyribonuclease RuvC [Edwardsiella tarda
           ATCC 23685]
 gi|291090805|gb|EFE23366.1| crossover junction endodeoxyribonuclease RuvC [Edwardsiella tarda
           ATCC 23685]
          Length = 173

 Score = 97.4 bits (241), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 62/150 (41%), Positives = 93/150 (62%), Gaps = 1/150 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I + V   L  RL  +Y G++++I  + P+
Sbjct: 4   ILGIDPGSRITGYGVIRQCGRQLDYLGSGCIRTAV-DDLPTRLKLVYAGVSEIITQFNPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR  AI++     +PV EYA   IK+ V+G G  +K Q+
Sbjct: 63  YFAIEQVFMAKNADSALKLGQARGAAIVAAVNRDLPVFEYAARQIKQTVVGNGGAEKAQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAY 156
             M++ L+        DAADALA+A+ H +
Sbjct: 123 QHMVRSLLKLPANPQADAADALAVAITHCH 152


>gi|332878375|ref|ZP_08446099.1| crossover junction endodeoxyribonuclease RuvC [Capnocytophaga sp.
           oral taxon 329 str. F0087]
 gi|332683700|gb|EGJ56573.1| crossover junction endodeoxyribonuclease RuvC [Capnocytophaga sp.
           oral taxon 329 str. F0087]
          Length = 192

 Score = 97.4 bits (241), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 53/151 (35%), Positives = 83/151 (54%), Gaps = 3/151 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG    G+G++ V G+     + G I          +L +++E +T +I+++ P+
Sbjct: 11  ILGIDPGTNLMGYGVLRVTGNKAVMETMGVIDLRKYAGPYLKLGRIFERVTGIIESYLPD 70

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E  F  K+  + LKLG+A+ +AI +     IP++EYAP  IK A+ G G   K+Q+
Sbjct: 71  EMAIEAPFFGKNVQSMLKLGRAQGVAIAAAIHRDIPITEYAPLKIKMAITGNGQASKEQV 130

Query: 127 HMMLKMLM---PESFFKGKDAADALAIAVCH 154
             ML  ++    E      DA D LA A CH
Sbjct: 131 AGMLTRMLHIREEDMLPYMDATDGLAAAYCH 161


>gi|21232456|ref|NP_638373.1| Holliday junction resolvase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66767460|ref|YP_242222.1| Holliday junction resolvase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|188990566|ref|YP_001902576.1| Holliday junction resolvase [Xanthomonas campestris pv. campestris
           str. B100]
 gi|24638204|sp|Q8P6E4|RUVC_XANCP RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|81306560|sp|Q4UXM1|RUVC_XANC8 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|229558765|sp|B0RPY3|RUVC_XANCB RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|21114238|gb|AAM42297.1| holliday junction resolvase, endodeoxyribonuclease [Xanthomonas
           campestris pv. campestris str. ATCC 33913]
 gi|66572792|gb|AAY48202.1| holliday junction resolvase, endodeoxyribonuclease [Xanthomonas
           campestris pv. campestris str. 8004]
 gi|167732326|emb|CAP50518.1| holliday junction resolvase [Xanthomonas campestris pv. campestris]
          Length = 174

 Score = 97.4 bits (241), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 57/138 (41%), Positives = 81/138 (58%), Gaps = 4/138 (2%)

Query: 6   RIIGIDPGLRRTGWGIVDVAGDNLC-FVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           RI+GIDPG +RTG GI+DV        V    +V       A RL +L  GL ++I+ ++
Sbjct: 3   RILGIDPGSQRTGIGIIDVDESGRSRHVFHAPLVLLGEGDFAQRLKRLLHGLGELIETYQ 62

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+E A+E+VF+ K A + LKLG AR  AI +  L  +PV EYA   IK A++G G  DK 
Sbjct: 63  PQEVAIEKVFMGKSADSALKLGHARGAAICAVVLRDLPVHEYAATEIKLALVGKGGADKV 122

Query: 125 QIHMMLKMLMPESFFKGK 142
           Q+  M+ +++     KGK
Sbjct: 123 QVQHMVGIMLN---LKGK 137


>gi|319953519|ref|YP_004164786.1| crossover junction endodeoxyribonuclease ruvc [Cellulophaga
           algicola DSM 14237]
 gi|319422179|gb|ADV49288.1| Crossover junction endodeoxyribonuclease ruvC [Cellulophaga
           algicola DSM 14237]
          Length = 184

 Score = 97.4 bits (241), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 51/152 (33%), Positives = 85/152 (55%), Gaps = 1/152 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG    G+G++ V    + F+    ++         +L  ++E   ++I  + P+
Sbjct: 7   ILGIDPGTTIMGFGLIKVVNKKMEFLQMNELLLQKYNDPYVKLKLIFERTIELIDTYHPD 66

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E  F  K+  + LKLG+A+ +A+ +     IP++EY P  IK A+ G G+  K+Q+
Sbjct: 67  EIAIEAPFFGKNVQSMLKLGRAQGVAMAAGLSREIPITEYLPKKIKMAITGNGNASKEQV 126

Query: 127 HMMLK-MLMPESFFKGKDAADALAIAVCHAYH 157
             ML+ ML  ++  K  D+ D LA AVCH Y+
Sbjct: 127 AKMLQSMLGLKTLPKNLDSTDGLAAAVCHFYN 158


>gi|123966378|ref|YP_001011459.1| Holliday junction resolvase [Prochlorococcus marinus str. MIT 9515]
 gi|166233283|sp|A2BX41|RUVC_PROM5 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|123200744|gb|ABM72352.1| Crossover junction endodeoxyribonuclease RuvC [Prochlorococcus
           marinus str. MIT 9515]
          Length = 157

 Score = 97.4 bits (241), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 57/155 (36%), Positives = 87/155 (56%), Gaps = 2/155 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RIIGIDPGL R G+GI+++  +   F+  G I +   +    RL +++  L  +I  W+
Sbjct: 1   MRIIGIDPGLGRVGYGIIEIQNEKKKFLDCGVIETDKNKKEEDRLYEIFNDLNTLINQWK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ AAVE+ F  K +  T+ + QAR + ++  A   I VSEYAP+ +K  + G G   KK
Sbjct: 61  PDIAAVEKFFFYKSS-TTISVVQARGVIMMVLASKNIQVSEYAPSQVKLTIAGSGKASKK 119

Query: 125 Q-IHMMLKMLMPESFFKGKDAADALAIAVCHAYHA 158
           + I  ++  L      K  D+ADALAIA+     A
Sbjct: 120 EVIEAVMFNLNLNYAPKPDDSADALAIALTKLNEA 154


>gi|254302616|ref|ZP_04969974.1| crossover junction endodeoxyribonuclease [Fusobacterium nucleatum
           subsp. polymorphum ATCC 10953]
 gi|148322808|gb|EDK88058.1| crossover junction endodeoxyribonuclease [Fusobacterium nucleatum
           subsp. polymorphum ATCC 10953]
          Length = 190

 Score = 97.1 bits (240), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 52/151 (34%), Positives = 80/151 (52%), Gaps = 1/151 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R+IGIDPG    G+GI+D   +N   V  G +++    S   RL  +Y  +  ++K +R
Sbjct: 1   MRVIGIDPGTAIVGYGIIDYDKNNYSIVDYGVVLTSKDLSTEERLEIVYNEIDKILKKYR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           PE  A+E +F  K+    + + QAR + +L      I ++ Y P  +K  + G G  +KK
Sbjct: 61  PEFMAIEDLFYFKNNKTVISVAQARGVILLVGKQNNIAMTSYTPLQVKIGITGYGKAEKK 120

Query: 125 QIHMML-KMLMPESFFKGKDAADALAIAVCH 154
           Q+  M+ K L      K  DAADALAI + H
Sbjct: 121 QVQQMVQKFLGLSEIPKPDDAADALAICITH 151


>gi|88602181|ref|YP_502359.1| Holliday junction resolvase [Methanospirillum hungatei JF-1]
 gi|88187643|gb|ABD40640.1| crossover junction endodeoxyribonuclease RuvC [Methanospirillum
           hungatei JF-1]
          Length = 164

 Score = 97.1 bits (240), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 85/150 (56%), Gaps = 2/150 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQ-SLAFRLCQLYEGLTDVIKNWRP 65
           ++GIDPG  R G+G+V    +       G I +  +      RL  +Y+ + ++I+ + P
Sbjct: 8   VLGIDPGFARCGYGVVGKEKNTPVAYEWGCIETTPKTGDTPVRLLSIYDSIENLIRTYAP 67

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
              A E++F +++    +++ +A+ + IL+ A  +IPV EY P  +K A+ G G  DKKQ
Sbjct: 68  ACLACEKLFFSRNTTTAMQVSEAKGVIILAAAKHQIPVFEYTPKQVKLAITGSGLADKKQ 127

Query: 126 IHMML-KMLMPESFFKGKDAADALAIAVCH 154
           I MM+ ++L      +  DAAD LA+A+CH
Sbjct: 128 IQMMITRLLRLSEIPQPDDAADGLALALCH 157


>gi|228471068|ref|ZP_04055903.1| crossover junction endodeoxyribonuclease RuvC [Porphyromonas
           uenonis 60-3]
 gi|313886912|ref|ZP_07820615.1| crossover junction endodeoxyribonuclease RuvC [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|332300798|ref|YP_004442719.1| crossover junction endodeoxyribonuclease RuvC [Porphyromonas
           asaccharolytica DSM 20707]
 gi|228307190|gb|EEK16227.1| crossover junction endodeoxyribonuclease RuvC [Porphyromonas
           uenonis 60-3]
 gi|312923609|gb|EFR34415.1| crossover junction endodeoxyribonuclease RuvC [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|332177861|gb|AEE13551.1| crossover junction endodeoxyribonuclease RuvC [Porphyromonas
           asaccharolytica DSM 20707]
          Length = 192

 Score = 97.1 bits (240), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 56/156 (35%), Positives = 89/156 (57%), Gaps = 13/156 (8%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           +IGIDPG    G+G++ V G +   ++ G I     +    RL ++Y+ +  +I  + P+
Sbjct: 10  LIGIDPGTIVMGYGLLSVRGQHAEMLTMGVIELSRYEDHYTRLGRIYKRVAGLIDEFLPD 69

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALAR-IPVSEYAPNTIKKAVIGVGHGDKKQ 125
           E A+E  F  K+  + LKLG+A+ +A ++ AL+R IP++EY P  +K+A+ G G   K+Q
Sbjct: 70  EMALEAPFYGKNVQSMLKLGRAQGVA-MAAALSRDIPIAEYVPMRVKQAITGTGQASKEQ 128

Query: 126 IHMMLKM-------LMPESFFKGKDAADALAIAVCH 154
           +  ML+        LMPE      DA D LA+A CH
Sbjct: 129 VATMLQRVLRIPAELMPEKL----DATDGLAVAYCH 160


>gi|298242493|ref|ZP_06966300.1| crossover junction endodeoxyribonuclease RuvC [Ktedonobacter
           racemifer DSM 44963]
 gi|297555547|gb|EFH89411.1| crossover junction endodeoxyribonuclease RuvC [Ktedonobacter
           racemifer DSM 44963]
          Length = 182

 Score = 97.1 bits (240), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 45/127 (35%), Positives = 78/127 (61%)

Query: 8   IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEE 67
           +GIDPG    G+ +V   G NL  ++   I +  +  LA RL  +Y  L+++I  ++P+E
Sbjct: 17  LGIDPGTAIVGYAVVMAQGSNLSLLACDVITTPAKTPLAQRLQTIYAELSNIIATFKPQE 76

Query: 68  AAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIH 127
           AA+E++F  K+A   + +G AR +A+L+ A   + V+EY P  +K+AV G G  +K Q+ 
Sbjct: 77  AAIEELFFAKNARTAMTVGHARGVAMLALANGGLTVAEYKPKQVKQAVTGYGDANKDQVG 136

Query: 128 MMLKMLM 134
            M+++L+
Sbjct: 137 EMVRILL 143


>gi|325274573|ref|ZP_08140631.1| Holliday junction resolvase [Pseudomonas sp. TJI-51]
 gi|324100300|gb|EGB98088.1| Holliday junction resolvase [Pseudomonas sp. TJI-51]
          Length = 174

 Score = 97.1 bits (240), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 61/157 (38%), Positives = 97/157 (61%), Gaps = 7/157 (4%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQ---SLAFRLCQLYEGLTDVIKNW 63
           I+GIDPG R TG+G+V        +V+SG    C+R     L  RL  ++ G++++I   
Sbjct: 4   ILGIDPGSRITGYGVVRQTARGCDYVASG----CIRTGSGELHERLQIVFRGVSEIITQH 59

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P    +E+VF+ ++A + LKLGQAR  AI++ A A + ++EY+   +K+AV G G  +K
Sbjct: 60  GPVTMGIERVFMARNADSALKLGQARGAAIVAAAEAGLEIAEYSATQVKQAVAGTGGANK 119

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           +Q+ MM+  L+  +     DA+DALAIA+CHA+  +S
Sbjct: 120 EQVMMMVMHLLKLTQKPQIDASDALAIALCHAHTRSS 156


>gi|300087334|ref|YP_003757856.1| crossover junction endodeoxyribonuclease RuvC [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299527067|gb|ADJ25535.1| crossover junction endodeoxyribonuclease RuvC [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 166

 Score = 97.1 bits (240), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 51/130 (39%), Positives = 79/130 (60%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPG R  G+GI+D  G +L FV SGT+    +  +  RL  +Y  L  +I  ++
Sbjct: 1   MRVLGIDPGTRCLGYGIIDADGADLTFVISGTVKCADKTPMPERLKYIYSELVAIITRYQ 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ AA+E  F+ ++A + L LG+A+A+A+L+ A A + V EY P  IK  V G G   K 
Sbjct: 61  PQCAAIETPFMAENARSALTLGKAQAVAVLASANAGLEVYEYPPARIKSHVAGFGASAKD 120

Query: 125 QIHMMLKMLM 134
           QI  M+ + +
Sbjct: 121 QIIRMVTLQL 130


>gi|26987950|ref|NP_743375.1| Holliday junction resolvase [Pseudomonas putida KT2440]
 gi|37999647|sp|Q88NJ2|RUVC_PSEPK RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|24982662|gb|AAN66839.1|AE016312_10 crossover junction endodeoxyribonuclease RuvC [Pseudomonas putida
           KT2440]
          Length = 174

 Score = 97.1 bits (240), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 61/157 (38%), Positives = 97/157 (61%), Gaps = 7/157 (4%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQ---SLAFRLCQLYEGLTDVIKNW 63
           I+GIDPG R TG+G+V        +V+SG    C+R     L  RL  ++ G++++I   
Sbjct: 4   ILGIDPGSRITGYGVVRQTARGCEYVASG----CIRTGSGELHERLQIVFRGVSEIIAQH 59

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P    +E+VF+ ++A + LKLGQAR  AI++ A A + ++EY+   +K+AV G G  +K
Sbjct: 60  GPVTMGIERVFMARNADSALKLGQARGAAIVAAAEAGLEIAEYSATQVKQAVAGTGGANK 119

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           +Q+ MM+  L+  +     DA+DALAIA+CHA+  +S
Sbjct: 120 EQVMMMVMHLLKLTQKPQIDASDALAIALCHAHTRSS 156


>gi|167035196|ref|YP_001670427.1| Holliday junction resolvase [Pseudomonas putida GB-1]
 gi|189046074|sp|B0KTJ4|RUVC_PSEPG RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|166861684|gb|ABZ00092.1| crossover junction endodeoxyribonuclease RuvC [Pseudomonas putida
           GB-1]
          Length = 174

 Score = 97.1 bits (240), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 61/157 (38%), Positives = 97/157 (61%), Gaps = 7/157 (4%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQ---SLAFRLCQLYEGLTDVIKNW 63
           I+GIDPG R TG+G+V        +V+SG    C+R     L  RL  ++ G++++I   
Sbjct: 4   ILGIDPGSRITGYGVVRQTARGCEYVASG----CIRTGSGELHERLQIVFRGVSEIIAQH 59

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P    +E+VF+ ++A + LKLGQAR  AI++ A A + ++EY+   +K+AV G G  +K
Sbjct: 60  GPVTMGIERVFMARNADSALKLGQARGAAIVAAAEAGLEIAEYSATQVKQAVAGTGGANK 119

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           +Q+ MM+  L+  +     DA+DALAIA+CHA+  +S
Sbjct: 120 EQVMMMVMHLLKLTQKPQIDASDALAIALCHAHTRSS 156


>gi|253583871|ref|ZP_04861069.1| crossover junction endodeoxyribonuclease ruvC [Fusobacterium varium
           ATCC 27725]
 gi|251834443|gb|EES63006.1| crossover junction endodeoxyribonuclease ruvC [Fusobacterium varium
           ATCC 27725]
          Length = 190

 Score = 97.1 bits (240), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 56/160 (35%), Positives = 91/160 (56%), Gaps = 1/160 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPG    G+G++D   +    +  G + +     +  RLCQ+YE L+++IK + 
Sbjct: 1   MRVLGIDPGTAIVGFGVIDYENNKFKVIDYGCLYTDKDTPMEERLCQIYEKLSELIKKYN 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           PE  A+E++F  K+    + +GQAR + +L      + +  Y P  +K  + G G  +KK
Sbjct: 61  PEHMAIEELFFFKNNKTVISVGQARGVLLLCGKQNGLKIQGYTPLQVKTGITGYGKAEKK 120

Query: 125 QIHMML-KMLMPESFFKGKDAADALAIAVCHAYHANSGYY 163
           Q+ +M+ K L  +   K  DAADALAIA+ H    NSGY+
Sbjct: 121 QVQLMVQKFLGMKELPKPDDAADALAIAITHINSLNSGYF 160


>gi|148546487|ref|YP_001266589.1| Holliday junction resolvase [Pseudomonas putida F1]
 gi|166233287|sp|A5VZU5|RUVC_PSEP1 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|148510545|gb|ABQ77405.1| Holliday junction endonuclease RuvC [Pseudomonas putida F1]
 gi|313497566|gb|ADR58932.1| RuvC [Pseudomonas putida BIRD-1]
          Length = 174

 Score = 97.1 bits (240), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 61/157 (38%), Positives = 97/157 (61%), Gaps = 7/157 (4%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQ---SLAFRLCQLYEGLTDVIKNW 63
           I+GIDPG R TG+G+V        +V+SG    C+R     L  RL  ++ G++++I   
Sbjct: 4   ILGIDPGSRITGYGVVRQTARGCEYVASG----CIRTGSGELHERLQIVFRGVSEIIAQH 59

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P    +E+VF+ ++A + LKLGQAR  AI++ A A + ++EY+   +K+AV G G  +K
Sbjct: 60  GPVTMGIERVFMARNADSALKLGQARGAAIVAAAEAGLEIAEYSATQVKQAVAGTGGANK 119

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           +Q+ MM+  L+  +     DA+DALAIA+CHA+  +S
Sbjct: 120 EQVMMMVMHLLKLTQKPQIDASDALAIALCHAHTRSS 156


>gi|254797272|ref|YP_003082114.1| crossover junction endodeoxyribonuclease RuvC [Neorickettsia
           risticii str. Illinois]
 gi|254590513|gb|ACT69875.1| crossover junction endodeoxyribonuclease RuvC [Neorickettsia
           risticii str. Illinois]
          Length = 166

 Score = 96.7 bits (239), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 52/147 (35%), Positives = 87/147 (59%), Gaps = 3/147 (2%)

Query: 8   IGIDPGLRRTGWGIVDVAGD-NLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           +G+DPGL RTGW +V+  G  ++ ++ SG + +   ++L  RL +++ G++DVI+   P 
Sbjct: 6   LGVDPGLIRTGWAVVEYDGPCDVRYIDSGVVKTASHENLFSRLEKIHRGISDVIERVNPS 65

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
            A +E+VFVN +  ++L L   R   IL+ AL  + + E+AP+ +KK + G G   K Q+
Sbjct: 66  IAVLEKVFVNSNPYSSLNLAYCRGALILTLALKGLFIVEFAPSVLKKRITGNGRATKAQV 125

Query: 127 HMMLKML--MPESFFKGKDAADALAIA 151
             M++ L  +     K  D  DALA+A
Sbjct: 126 KYMVEQLLGLDPCLSKYSDLYDALALA 152


>gi|269926073|ref|YP_003322696.1| crossover junction endodeoxyribonuclease RuvC [Thermobaculum
           terrenum ATCC BAA-798]
 gi|269789733|gb|ACZ41874.1| crossover junction endodeoxyribonuclease RuvC [Thermobaculum
           terrenum ATCC BAA-798]
          Length = 171

 Score = 96.7 bits (239), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 61/152 (40%), Positives = 90/152 (59%), Gaps = 1/152 (0%)

Query: 4   SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           SIR++G+DPG    G+G+V   G +      G I +  +  L  RL  ++E L ++I+  
Sbjct: 2   SIRVLGLDPGTAIVGFGLVIFDGQSYQPEKYGVIRTPSKTPLPHRLLMIHEQLDELIEEL 61

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +PE  AVE+VF  +     L +G AR + +L+ A   +P+ EY P  +K+A+IG G  +K
Sbjct: 62  KPEHVAVEEVFFARATTTALAVGHARGVILLTAAEHNLPIFEYTPLQVKQAIIGYGGAEK 121

Query: 124 KQIHMMLK-MLMPESFFKGKDAADALAIAVCH 154
           KQI   +K +L  ES  K  DAADALAIA+CH
Sbjct: 122 KQIQQFIKNLLRLESIPKPDDAADALAIAICH 153


>gi|189460820|ref|ZP_03009605.1| hypothetical protein BACCOP_01467 [Bacteroides coprocola DSM 17136]
 gi|189432394|gb|EDV01379.1| hypothetical protein BACCOP_01467 [Bacteroides coprocola DSM 17136]
          Length = 189

 Score = 96.7 bits (239), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 61/153 (39%), Positives = 86/153 (56%), Gaps = 7/153 (4%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTI--VSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           I+GIDPG    G+G++ V G     V+ G I    C    L  +L  +YE +  VI ++ 
Sbjct: 10  ILGIDPGTNIMGYGVLKVTGVKPQVVALGVIDLRKCTDPYL--KLKHIYERVQGVISSYL 67

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+E A+E  F  K+  + LKLG+A+ +AI++     IPV+EYAP  IK A+ G G   K+
Sbjct: 68  PDELAIEAPFFGKNVQSMLKLGRAQGVAIVAALCRDIPVTEYAPLKIKMAITGNGQASKE 127

Query: 125 QIHMMLKMLM--PESFFKG-KDAADALAIAVCH 154
           Q+  MLK ++  PES      DA DAL  A CH
Sbjct: 128 QVADMLKRMLHIPESEMGPFMDATDALGAAYCH 160


>gi|85375731|ref|YP_459793.1| Holliday junction resolvase [Erythrobacter litoralis HTCC2594]
 gi|123409472|sp|Q2N5P5|RUVC_ERYLH RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|84788814|gb|ABC64996.1| Holliday junction resolvase [Erythrobacter litoralis HTCC2594]
          Length = 163

 Score = 96.7 bits (239), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 50/129 (38%), Positives = 79/129 (61%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+G+DP L  TGWG++   G  +  V++G + +  +  +A RL  L+  +  VI    P+
Sbjct: 4   ILGLDPSLSCTGWGVIRAEGSRIAHVANGQVKTDAKAPIADRLHHLHAAIAAVIAAHDPD 63

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
            AA E++F+NK+  +TLKL QAR   + + A   + V+E+A   +KK+V+G G  DK Q+
Sbjct: 64  RAAAEEIFINKNPQSTLKLAQARGCVLAACAAGGLAVNEHAARLVKKSVVGTGGADKAQV 123

Query: 127 HMMLKMLMP 135
             MLK+LMP
Sbjct: 124 QAMLKVLMP 132


>gi|154494158|ref|ZP_02033478.1| hypothetical protein PARMER_03505 [Parabacteroides merdae ATCC
           43184]
 gi|154086020|gb|EDN85065.1| hypothetical protein PARMER_03505 [Parabacteroides merdae ATCC
           43184]
          Length = 185

 Score = 96.7 bits (239), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 90/163 (55%), Gaps = 3/163 (1%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M K   I+GIDPG    G+G++ + G+     + G +     +    RL +++E +  +I
Sbjct: 1   MTKDRVILGIDPGTIVMGYGVLTIEGNKPKLEAMGILQLNKYEDHYLRLRKIFERVLGLI 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             + P+E A+E  F  K+  + LKLG+A+ +A+ +     IP+ EYAP  IK ++ G G+
Sbjct: 61  DQYHPDELAIEAPFFGKNVQSMLKLGRAQGVAMAAALERDIPIFEYAPLKIKMSITGNGN 120

Query: 121 GDKKQIHMMLK--MLMPE-SFFKGKDAADALAIAVCHAYHANS 160
             K+Q+  ML+  + +PE S     DA D LA AVCH +  N+
Sbjct: 121 AAKEQVAGMLQRYLHIPEASMLPQLDATDGLAAAVCHYFQTNN 163


>gi|213962625|ref|ZP_03390886.1| crossover junction endodeoxyribonuclease RuvC [Capnocytophaga
           sputigena Capno]
 gi|213954620|gb|EEB65941.1| crossover junction endodeoxyribonuclease RuvC [Capnocytophaga
           sputigena Capno]
          Length = 181

 Score = 96.7 bits (239), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 86/157 (54%), Gaps = 9/157 (5%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG    G+G++ V  D +  +    +      +   +L  ++    ++I  ++P+
Sbjct: 5   ILGIDPGTTIMGFGLIQVERDTMKLLQLNELQLSKYSNHYLKLSVIFNRTLELIDTYKPD 64

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E  F  K+  + LKLG+A+ +A+ +    +IP++EY P  +K A+ G G   K+Q+
Sbjct: 65  ELAIEAPFFGKNVQSMLKLGRAQGVAMAAGLSRQIPITEYEPKKVKMAITGNGSASKEQV 124

Query: 127 HMMLKML-----MPESFFKGKDAADALAIAVCHAYHA 158
             ML+ L     +P+ F    DA D LA+AVCH ++ 
Sbjct: 125 AKMLQQLLNIKELPKHF----DATDGLAVAVCHFFNG 157


>gi|310823012|ref|YP_003955370.1| crossover junction endodeoxyribonuclease ruvc [Stigmatella
           aurantiaca DW4/3-1]
 gi|309396084|gb|ADO73543.1| Crossover junction endodeoxyribonuclease RuvC [Stigmatella
           aurantiaca DW4/3-1]
          Length = 194

 Score = 96.7 bits (239), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 59/154 (38%), Positives = 88/154 (57%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M   +R++G+DPG R  G+G+V+     L  +  G I       L  RL  L+  LT ++
Sbjct: 1   MESHLRVLGVDPGSRFMGYGVVEERRGQLVHLGHGVIKVDPEAPLHQRLMVLHVELTAML 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
           K +RPE  AVE VF  ++A + L LG AR +A+L+ A A + V EYAP  +K++V   G 
Sbjct: 61  KKYRPESVAVEGVFTFRNARSALVLGHARGVALLAAAQAGLSVHEYAPARVKRSVGAGGA 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCH 154
             K+ I  M+  L+     +  DA+DALA+A+CH
Sbjct: 121 SGKESIARMVCSLLKLEAIERADASDALAVALCH 154


>gi|288927303|ref|ZP_06421150.1| crossover junction endodeoxyribonuclease RuvC [Prevotella sp. oral
           taxon 317 str. F0108]
 gi|288330137|gb|EFC68721.1| crossover junction endodeoxyribonuclease RuvC [Prevotella sp. oral
           taxon 317 str. F0108]
          Length = 190

 Score = 96.7 bits (239), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 81/151 (53%), Gaps = 3/151 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG    G+G++ V G     V+ G I          RL  ++E ++ +I  + P+
Sbjct: 10  IMGIDPGTTLMGYGVIRVVGKKAQMVAMGVIDLRKMPDPYLRLGHIFERVSGIIDAYLPD 69

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E  F  K+  + LKLG+A+ +AI +     IP+ EYAP  IK A+ G G   K+Q+
Sbjct: 70  ELAIEAPFFGKNVQSMLKLGRAQGVAIAAAIQRDIPIHEYAPLKIKMAITGQGQASKEQV 129

Query: 127 HMMLKMLMP---ESFFKGKDAADALAIAVCH 154
             MLK ++    +   K  DA DAL  A CH
Sbjct: 130 AGMLKRMLKLSDDDMPKFMDATDALGAAYCH 160


>gi|189218505|ref|YP_001939146.1| Holliday junction resolvasome, endonuclease subunit
           [Methylacidiphilum infernorum V4]
 gi|189185363|gb|ACD82548.1| Holliday junction resolvasome, endonuclease subunit
           [Methylacidiphilum infernorum V4]
          Length = 169

 Score = 96.3 bits (238), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 58/157 (36%), Positives = 91/157 (57%), Gaps = 1/157 (0%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M K +RI+GIDP LR+TG+GI++  G +   +  G IV+      A +L  +YE L  +I
Sbjct: 2   MNKPLRILGIDPALRKTGYGIIESNGTSTRLIDFGVIVTE-HADQARKLRSIYERLLSII 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
           + + PE  A+E +   ++    + +G AR +A+L  +L  +PV EY+P  IK A  G G 
Sbjct: 61  QEYSPEHVAMESIIFVQNRKTAIDMGAARGVALLLFSLKELPVFEYSPRKIKMAATGKGS 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYH 157
             K+Q+  M++ L+        DAADALA+A+ H +H
Sbjct: 121 ARKEQVSFMIRALLAMDSLPPLDAADALAVALTHVHH 157


>gi|329893678|ref|ZP_08269812.1| Crossover junction endodeoxyribonuclease RuvC [gamma
           proteobacterium IMCC3088]
 gi|328923605|gb|EGG30917.1| Crossover junction endodeoxyribonuclease RuvC [gamma
           proteobacterium IMCC3088]
          Length = 172

 Score = 96.3 bits (238), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 50/128 (39%), Positives = 81/128 (63%), Gaps = 1/128 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R+TG+GI++       +V+SG ++  V +++  RL  L E L ++I+ + P 
Sbjct: 4   ILGIDPGSRKTGFGIIEFNQGKSRYVTSG-VIRLVDRAIPARLKVLSESLEELIQCYSPS 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E ++EQVF+ + A A LKLG AR  AI++     + V+EY+   IK++V+G G  DK Q+
Sbjct: 63  ELSIEQVFLARSADAALKLGHARGAAIVACVTRGMSVNEYSARQIKQSVVGSGGADKSQV 122

Query: 127 HMMLKMLM 134
             M+  L+
Sbjct: 123 QHMVSRLL 130


>gi|256818926|ref|YP_003140205.1| Holliday junction resolvase [Capnocytophaga ochracea DSM 7271]
 gi|315224307|ref|ZP_07866141.1| crossover junction endoribonuclease subunit C [Capnocytophaga
           ochracea F0287]
 gi|256580509|gb|ACU91644.1| crossover junction endodeoxyribonuclease RuvC [Capnocytophaga
           ochracea DSM 7271]
 gi|314945697|gb|EFS97712.1| crossover junction endoribonuclease subunit C [Capnocytophaga
           ochracea F0287]
          Length = 181

 Score = 96.3 bits (238), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 85/157 (54%), Gaps = 9/157 (5%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG    G+G++ V  D +  +    +      +   +L  ++    ++I  ++P+
Sbjct: 5   ILGIDPGTTIMGFGLIQVERDTMKLLQLNELQLSKYSNHYLKLSVIFNRTLELIDTYKPD 64

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E  F  K+  + LKLG+A+ +A+ +     IP++EY P  +K A+ G G   K+Q+
Sbjct: 65  ELAIEAPFFGKNVQSMLKLGRAQGVAMAAGLSREIPITEYEPKKVKMAITGNGSASKEQV 124

Query: 127 HMMLKML-----MPESFFKGKDAADALAIAVCHAYHA 158
             ML+ L     +P+ F    DA D LA+AVCH ++ 
Sbjct: 125 AKMLQQLLNIKELPKHF----DATDGLAVAVCHFFNG 157


>gi|260911196|ref|ZP_05917799.1| crossover junction endoribonuclease subunit C [Prevotella sp. oral
           taxon 472 str. F0295]
 gi|260634676|gb|EEX52763.1| crossover junction endoribonuclease subunit C [Prevotella sp. oral
           taxon 472 str. F0295]
          Length = 190

 Score = 96.3 bits (238), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 81/151 (53%), Gaps = 3/151 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG    G+G++ V G     V+ G I          RL  ++E ++ +I  + P+
Sbjct: 10  ILGIDPGTTLMGYGVIRVVGKKAQMVAMGVIDLRKMPDPYLRLGHIFERVSGIIDAYLPD 69

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E  F  K+  + LKLG+A+ +AI +     IP+ EYAP  IK A+ G G   K+Q+
Sbjct: 70  ELAIEAPFFGKNVQSMLKLGRAQGVAIAAAIHRDIPIHEYAPLKIKMAITGQGQASKEQV 129

Query: 127 HMMLKMLMP---ESFFKGKDAADALAIAVCH 154
             MLK ++    +   K  DA DAL  A CH
Sbjct: 130 AGMLKRMLKLSDDDMPKFMDATDALGAAYCH 160


>gi|282860256|ref|ZP_06269327.1| crossover junction endodeoxyribonuclease RuvC [Prevotella bivia
           JCVIHMP010]
 gi|282586989|gb|EFB92223.1| crossover junction endodeoxyribonuclease RuvC [Prevotella bivia
           JCVIHMP010]
          Length = 192

 Score = 96.3 bits (238), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 52/156 (33%), Positives = 85/156 (54%), Gaps = 3/156 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG    G+G++ + G+    +  G I     + +  RL ++++ +T +I  + P+
Sbjct: 12  ILGIDPGTNVMGYGLLHIVGNKAELIVMGVIDMRKEKDVYLRLGKIFDRVTGIIDEYLPD 71

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E  F  K+  + LKLG+A+ +AI +     +P+ EYAP  IK A+ G G   K+Q+
Sbjct: 72  ELAIEAPFFGKNVQSMLKLGRAQGVAIAAAIHHDVPIHEYAPLKIKMAITGNGAASKEQV 131

Query: 127 HMMLKMLM---PESFFKGKDAADALAIAVCHAYHAN 159
             ML+ L+    +      DA DA+A A CH    N
Sbjct: 132 AKMLQKLLHLRDDQMPHFMDATDAIAAAYCHFLQIN 167


>gi|285019191|ref|YP_003376902.1| holliday junction resolvasome, endonuclease subunit protein
           [Xanthomonas albilineans GPE PC73]
 gi|283474409|emb|CBA16910.1| putative holliday junction resolvasome, endonuclease subunit
           protein [Xanthomonas albilineans]
          Length = 207

 Score = 96.3 bits (238), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 65/153 (42%), Positives = 92/153 (60%), Gaps = 1/153 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +RI+GIDPG +RTG GI+DV A      V    +          RL +L  GL  +I+ +
Sbjct: 36  VRILGIDPGSQRTGVGIIDVDAAGRARHVYHAPLRLLGEGDFPQRLKRLLHGLDALIEEY 95

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RP+E A+E+VF+ K A A LKLG AR  AI +  L  +PV EYA   IK A++G G  +K
Sbjct: 96  RPQEVAIERVFMGKSADAALKLGHARGAAICAVVLRDLPVHEYAAKEIKLALVGKGAAEK 155

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
           +Q+  M+ +++  S     DAADALA+A+ HA+
Sbjct: 156 QQVQHMVGLMLSLSGKLQADAADALAVAITHAH 188


>gi|213421205|ref|ZP_03354271.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
          Length = 166

 Score = 96.3 bits (238), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 47/120 (39%), Positives = 77/120 (64%), Gaps = 1/120 (0%)

Query: 15  RRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVF 74
           R TG+G++   G  L ++ SG I + V   L  RL  +Y G+T++I  ++P+  A+EQVF
Sbjct: 5   RITGYGVIRQVGRQLTYLGSGCIRTKV-DDLPSRLKLIYAGVTEIITQFQPDYFAIEQVF 63

Query: 75  VNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLM 134
           + K+A + LKLGQAR +AI++     +PV EYA   +K+ V+G+G  +K Q+  M++ L+
Sbjct: 64  MAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQVQHMVRTLL 123


>gi|229496128|ref|ZP_04389849.1| crossover junction endodeoxyribonuclease RuvC [Porphyromonas
           endodontalis ATCC 35406]
 gi|229316959|gb|EEN82871.1| crossover junction endodeoxyribonuclease RuvC [Porphyromonas
           endodontalis ATCC 35406]
          Length = 192

 Score = 96.3 bits (238), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 92/166 (55%), Gaps = 6/166 (3%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+G+DPG +  G+G++ +       ++ G I     +    RL  ++  +T +I+ + P+
Sbjct: 9   ILGVDPGTQLMGYGLIRITASQPKLLALGVIELSKYEDHYLRLSHIFNRITGLIEEFLPD 68

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E  F  K+  + LKLG+A+  A+++     +P++EYAP  IK+++ G G   K+Q+
Sbjct: 69  EMALEAPFYGKNVQSMLKLGRAQGAAMIAGLQRGLPITEYAPLRIKQSITGSGSASKEQV 128

Query: 127 HMMLKMLM---PESFFKGKDAADALAIAVCHAYHANSGYYKIASQD 169
             ML+ ++        K  DA D LA+A+CH Y  ++    +AS D
Sbjct: 129 AAMLQRILAIPAADMPKHLDATDGLAVALCHFYQTSN---TLASSD 171


>gi|283781354|ref|YP_003372109.1| crossover junction endodeoxyribonuclease RuvC [Pirellula staleyi
           DSM 6068]
 gi|283439807|gb|ADB18249.1| crossover junction endodeoxyribonuclease RuvC [Pirellula staleyi
           DSM 6068]
          Length = 186

 Score = 95.9 bits (237), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 93/163 (57%), Gaps = 8/163 (4%)

Query: 6   RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           R++G+DPGL  TG+G++++ G +   + +G +      +LA R+ ++Y G+ DVI++  P
Sbjct: 15  RVLGVDPGLGITGYGVIELVGMSPKIIEAGVVRGRSGATLAARIGEIYAGIHDVIQSLAP 74

Query: 66  EEAAVEQVFVNKDAVAT-LKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
            E A+E+++ + D   T + +G AR   +L+   A IPV  YA   +KK + G G   K 
Sbjct: 75  TELAIEELYSHYDRPRTAILMGHARGAILLAGHQAGIPVLSYASTQVKKLLTGNGRAPKD 134

Query: 125 QIH----MMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYY 163
           Q+       LK+  P    +  D ADALAIA+CH + + SG +
Sbjct: 135 QMQNAVCRELKLAAPP---EPPDVADALAIALCHIHLSRSGLH 174


>gi|225181940|ref|ZP_03735374.1| crossover junction endodeoxyribonuclease RuvC [Dethiobacter
           alkaliphilus AHT 1]
 gi|225167380|gb|EEG76197.1| crossover junction endodeoxyribonuclease RuvC [Dethiobacter
           alkaliphilus AHT 1]
          Length = 168

 Score = 95.9 bits (237), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 47/130 (36%), Positives = 81/130 (62%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RIIGIDPG+  TG+GIV+  G     +  G +++        RL  +Y  L+ V+  + 
Sbjct: 1   MRIIGIDPGIATTGYGIVESDGHRSVAIEYGCVITDKDLPGPQRLQCIYRELSAVVSRFE 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  AVE++F NK+  + +++G+AR +AIL+   A + + EY P  +K++V+G G  +KK
Sbjct: 61  PQVMAVEKLFFNKNINSAMQVGEARGVAILTGMHAGLDIFEYTPLQVKQSVVGFGRAEKK 120

Query: 125 QIHMMLKMLM 134
           Q+  M+K+L+
Sbjct: 121 QVQQMVKVLL 130


>gi|255012370|ref|ZP_05284496.1| Holliday junction resolvase [Bacteroides sp. 2_1_7]
 gi|256839216|ref|ZP_05544726.1| crossover junction endodeoxyribonuclease RuvC [Parabacteroides sp.
           D13]
 gi|262382336|ref|ZP_06075473.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides sp.
           2_1_33B]
 gi|301308455|ref|ZP_07214409.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides sp.
           20_3]
 gi|256740135|gb|EEU53459.1| crossover junction endodeoxyribonuclease RuvC [Parabacteroides sp.
           D13]
 gi|262295214|gb|EEY83145.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides sp.
           2_1_33B]
 gi|300833925|gb|EFK64541.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides sp.
           20_3]
          Length = 185

 Score = 95.9 bits (237), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 88/163 (53%), Gaps = 3/163 (1%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M K   I+GIDPG    G+GI+ + G+     + G +     +    RL +++E +  +I
Sbjct: 1   MIKDRIILGIDPGTIVMGYGILKIEGNKPKLEAMGILQLNKYEDHYLRLRKIFERVLALI 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             + P+E A+E  F  K+  + LKLG+A+ +A+ +     IP+ EYAP  IK ++ G G+
Sbjct: 61  DQYHPDELAIEAPFFGKNVQSMLKLGRAQGVAMAAALERDIPIFEYAPLKIKLSITGNGN 120

Query: 121 GDKKQIHMMLKMLMP---ESFFKGKDAADALAIAVCHAYHANS 160
             K+Q+  ML+  +    ES     DA D LA AVCH +  N+
Sbjct: 121 AAKEQVAGMLQRYLKIPDESMLPQLDATDGLAAAVCHYFQTNN 163


>gi|71277765|ref|YP_268841.1| crossover junction endodeoxyribonuclease RuvC [Colwellia
           psychrerythraea 34H]
 gi|110287670|sp|Q483C6|RUVC_COLP3 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|71143505|gb|AAZ23978.1| crossover junction endodeoxyribonuclease RuvC [Colwellia
           psychrerythraea 34H]
          Length = 175

 Score = 95.9 bits (237), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/155 (37%), Positives = 95/155 (61%), Gaps = 1/155 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVR-QSLAFRLCQLYEGLTDVIKNWRP 65
           I+GIDPG R TG+G++        ++ SG I +  + + LA RL  ++ G++++I  ++P
Sbjct: 4   ILGIDPGSRFTGYGVIKQEKQRFTYLGSGCIKAMSQGEDLASRLQTIFAGVSELIIQFKP 63

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
           +  A+EQVF+  +    LKLGQAR  AI++   + + ++EY+   IK+AV+G G  DK Q
Sbjct: 64  DMFAIEQVFMGVNPGGALKLGQARGAAIVAATNSGLTIAEYSARQIKQAVVGTGAADKNQ 123

Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           +  M+K ++        DAADALA+A+CH +   S
Sbjct: 124 VQHMVKSILKLPGTPQADAADALAVALCHGHSHTS 158


>gi|154707139|ref|YP_001423841.1| Holliday junction resolvase [Coxiella burnetii Dugway 5J108-111]
 gi|164686123|ref|ZP_01946975.2| crossover junction endodeoxyribonuclease RuvC [Coxiella burnetii
           'MSU Goat Q177']
 gi|212219279|ref|YP_002306066.1| Holliday junction resolvase [Coxiella burnetii CbuK_Q154]
 gi|189046062|sp|A9KF42|RUVC_COXBN RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|226698750|sp|B6J504|RUVC_COXB1 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|154356425|gb|ABS77887.1| crossover junction endodeoxyribonuclease [Coxiella burnetii Dugway
           5J108-111]
 gi|164601688|gb|EAX32393.2| crossover junction endodeoxyribonuclease RuvC [Coxiella burnetii
           'MSU Goat Q177']
 gi|212013541|gb|ACJ20921.1| crossover junction endodeoxyribonuclease [Coxiella burnetii
           CbuK_Q154]
          Length = 172

 Score = 95.9 bits (237), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/149 (45%), Positives = 90/149 (60%), Gaps = 1/149 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           IIGIDPG R TG+GI+   G     ++ G I      SL FRL Q+   L D+I   RP 
Sbjct: 8   IIGIDPGSRITGYGIIWSQGSKQGCIAFGQI-KTDNDSLNFRLHQIERELRDLILIHRPH 66

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           EAA+EQVF   +  + LKLGQAR  A+++ A   +PV+EY+   IK+AV+G G   K Q+
Sbjct: 67  EAAIEQVFTFHNHQSALKLGQARGAALVATAACALPVAEYSARQIKQAVVGYGAATKAQV 126

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHA 155
             M+ +L+        DAADALAIA+CHA
Sbjct: 127 QHMVHLLLQLEKAPPADAADALAIALCHA 155


>gi|82703834|ref|YP_413400.1| crossover junction endodeoxyribonuclease RuvC [Nitrosospira
           multiformis ATCC 25196]
 gi|82411899|gb|ABB76008.1| Holliday junction endonuclease RuvC [Nitrosospira multiformis ATCC
           25196]
          Length = 133

 Score = 95.9 bits (237), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 49/112 (43%), Positives = 70/112 (62%)

Query: 45  LAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVS 104
           +  RL  + + L +VI   +P+  A+EQVFVN +  +TL LGQAR  AI +  L  + V+
Sbjct: 1   MPLRLKSIMDHLNEVIAEHKPDHVAIEQVFVNVNPKSTLMLGQARGAAICTAVLNNLSVA 60

Query: 105 EYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
           EY    IK+AV+G GH  K+Q+  M++ L+  S     DAADALA A+CHA+
Sbjct: 61  EYTALQIKQAVVGEGHARKEQVQEMVRRLLRLSGQPASDAADALACAICHAH 112


>gi|257470233|ref|ZP_05634324.1| crossover junction endodeoxyribonuclease ruvC [Fusobacterium
           ulcerans ATCC 49185]
 gi|317064447|ref|ZP_07928932.1| crossover junction endodeoxyribonuclease ruvC [Fusobacterium
           ulcerans ATCC 49185]
 gi|313690123|gb|EFS26958.1| crossover junction endodeoxyribonuclease ruvC [Fusobacterium
           ulcerans ATCC 49185]
          Length = 190

 Score = 95.9 bits (237), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/160 (36%), Positives = 88/160 (55%), Gaps = 1/160 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPG    G+G++D        V  G   +     +  RLCQ+YE L D+IK + 
Sbjct: 1   MRVLGIDPGTAIVGFGVIDYEESKFKIVDYGCFYTDKDTPMEDRLCQIYEKLDDLIKKYN 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           PE  A+E++F  K+    + +GQAR + +L      + +  Y P  +K  + G G  +KK
Sbjct: 61  PEHMAIEELFFFKNNKTVISVGQARGVLLLCGKQNGLKIQGYTPLQVKTGITGYGKAEKK 120

Query: 125 QIHMML-KMLMPESFFKGKDAADALAIAVCHAYHANSGYY 163
           Q+ +M+ K L  +   K  DAADALAIA+ H    NSGY+
Sbjct: 121 QVQLMVQKFLGMKEIPKPDDAADALAIAITHINSLNSGYF 160


>gi|119356376|ref|YP_911020.1| crossover junction endodeoxyribonuclease RuvC [Chlorobium
           phaeobacteroides DSM 266]
 gi|166233187|sp|A1BDW9|RUVC_CHLPD RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|119353725|gb|ABL64596.1| crossover junction endodeoxyribonuclease RuvC [Chlorobium
           phaeobacteroides DSM 266]
          Length = 187

 Score = 95.9 bits (237), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 51/148 (34%), Positives = 80/148 (54%), Gaps = 1/148 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           ++G+DPG  +TG+G+V         ++ G I     +S A R+ Q+Y  L ++I + +P 
Sbjct: 3   VLGVDPGSLKTGYGVVRQDSSGFSVLTCGVIRLHSGKSHAERIGQIYRELEEIINSTKPR 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+E VF++K+A + LKLGQ R   I       + + EYAP  +K AV G G   K+Q+
Sbjct: 63  RVALETVFLSKNAQSALKLGQVRGAVIALSMNTDLELHEYAPREVKSAVTGRGSASKEQV 122

Query: 127 HMML-KMLMPESFFKGKDAADALAIAVC 153
             M+ +ML         D  DAL +A+C
Sbjct: 123 AFMVTRMLQVTGHITSYDVTDALGLALC 150


>gi|258645439|ref|ZP_05732908.1| crossover junction endodeoxyribonuclease RuvC [Dialister invisus
           DSM 15470]
 gi|260402790|gb|EEW96337.1| crossover junction endodeoxyribonuclease RuvC [Dialister invisus
           DSM 15470]
          Length = 165

 Score = 95.9 bits (237), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 87/154 (56%), Gaps = 1/154 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPG  R G+GIV+  G+ +  ++ G I +   Q+   RL  +YEG+ ++I+ +R
Sbjct: 1   MRVLGIDPGTGRCGFGIVEKHGNRIVPINYGVIETFKEQNSLERLNIVYEGVAELIEMYR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P    VE ++ N +    +++ QAR + +L+     +P     P  +K+ + G G  +KK
Sbjct: 61  PHFMGVESLYFNTNITTGIEVAQARGVILLAGYRQSVPAVNVTPLQVKQQLAGYGRAEKK 120

Query: 125 Q-IHMMLKMLMPESFFKGKDAADALAIAVCHAYH 157
           Q I M+++++   +     DAADALAI +   Y 
Sbjct: 121 QVIEMVMRIMHINTKINPDDAADALAIGLTAIYQ 154


>gi|297183450|gb|ADI19582.1| holliday junction resolvasome, endonuclease subunit [uncultured
           Acidobacteria bacterium HF0770_27F21]
          Length = 167

 Score = 95.9 bits (237), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 62/156 (39%), Positives = 94/156 (60%), Gaps = 1/156 (0%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M +S+RI+G+DPG R TG+ ++DV G ++  V+ G +    ++ ++ RL QL   L  + 
Sbjct: 1   MPESVRILGVDPGSRFTGYAVIDVFGADVNVVAYGVLKLPQKKPVSERLKQLDMLLRQLG 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
           +   P E  VE+ FV  +A + L L Q R +AI++ A A  PV EY+   +KKAV+G G 
Sbjct: 61  EEHCPGEVVVEEAFVAVNARSALVLAQVRGVAIVA-AGASCPVFEYSARAVKKAVVGYGQ 119

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
            DK Q+  M+K L+       +DAADALA+ +CH Y
Sbjct: 120 ADKGQVVQMVKTLLHLPEAPPQDAADALALVLCHMY 155


>gi|218263283|ref|ZP_03477454.1| hypothetical protein PRABACTJOHN_03138 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222829|gb|EEC95479.1| hypothetical protein PRABACTJOHN_03138 [Parabacteroides johnsonii
           DSM 18315]
          Length = 185

 Score = 95.9 bits (237), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 89/163 (54%), Gaps = 3/163 (1%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M K   I+GIDPG    G+G++ + G      + G +     +    RL +++E +  +I
Sbjct: 1   MTKDRVILGIDPGTIVMGYGVLKIEGHKPKLEAMGILQLNKYEDHYLRLRKIFERVLGLI 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             + P+E A+E  F  K+  + LKLG+A+ +A+ +     IP+ EYAP  IK ++ G G+
Sbjct: 61  DQYHPDELAIEAPFFGKNVQSMLKLGRAQGVAMAAALERDIPIFEYAPLKIKMSITGNGN 120

Query: 121 GDKKQIHMMLK--MLMPE-SFFKGKDAADALAIAVCHAYHANS 160
             K+Q+  ML+  + +PE S     DA D LA AVCH +  N+
Sbjct: 121 AAKEQVAGMLQRYLHIPEASMLPQLDATDGLAAAVCHYFQTNN 163


>gi|332828729|gb|EGK01421.1| crossover junction endodeoxyribonuclease ruvC [Dysgonomonas gadei
           ATCC BAA-286]
          Length = 187

 Score = 95.5 bits (236), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 54/158 (34%), Positives = 89/158 (56%), Gaps = 5/158 (3%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG +  G+GI+ V  +    ++ G +          +L +++E +  +I  + P+
Sbjct: 8   ILGIDPGTQVMGYGILRVVNNKPEMLAMGILQLSKYDDHYLKLRRIFERIISLIDEFLPD 67

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALAR-IPVSEYAPNTIKKAVIGVGHGDKKQ 125
           E A+E  F  K+  + LKLG+A+ +A ++ AL+R IP+ EYAP  IK ++ G G   K+Q
Sbjct: 68  ELAIEAPFFGKNVQSMLKLGRAQGVA-MAAALSRDIPIFEYAPLKIKMSITGNGRAAKEQ 126

Query: 126 IHMMLKMLMP---ESFFKGKDAADALAIAVCHAYHANS 160
           +  ML+  +    E+     DA D LA AVCH +  N+
Sbjct: 127 VAYMLQNFLKIPDENMLPQMDATDGLAAAVCHFFQTNN 164


>gi|19703559|ref|NP_603121.1| Holliday junction resolvase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|296327632|ref|ZP_06870175.1| crossover junction endoribonuclease subunit C [Fusobacterium
           nucleatum subsp. nucleatum ATCC 23726]
 gi|22096144|sp|Q8RGS0|RUVC_FUSNN RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|19713657|gb|AAL94420.1| Crossover junction endodeoxyribonuclease ruvC [Fusobacterium
           nucleatum subsp. nucleatum ATCC 25586]
 gi|296155222|gb|EFG95996.1| crossover junction endoribonuclease subunit C [Fusobacterium
           nucleatum subsp. nucleatum ATCC 23726]
          Length = 190

 Score = 95.5 bits (236), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 51/151 (33%), Positives = 81/151 (53%), Gaps = 1/151 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R+IGIDPG    G+GI+D   +    V  G +++    S   RL  +Y+ +  ++K ++
Sbjct: 1   MRVIGIDPGTAIVGYGIIDYDKNKYSIVDYGVVLTSKDLSTEERLEIVYDEIDKILKKYK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           PE  A+E +F  K+    + + QAR + +L+     I ++ Y P  +K  + G G  +KK
Sbjct: 61  PEFMAIEDLFYFKNNKTVISVAQARGVILLAGKQNNIAMTSYTPLQVKIGITGYGKAEKK 120

Query: 125 QIHMML-KMLMPESFFKGKDAADALAIAVCH 154
           QI  M+ K L      K  DAADALAI + H
Sbjct: 121 QIQQMVQKFLGLSEIPKPDDAADALAICITH 151


>gi|242239585|ref|YP_002987766.1| Holliday junction resolvase [Dickeya dadantii Ech703]
 gi|242131642|gb|ACS85944.1| crossover junction endodeoxyribonuclease RuvC [Dickeya dadantii
           Ech703]
          Length = 173

 Score = 95.5 bits (236), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 59/154 (38%), Positives = 96/154 (62%), Gaps = 1/154 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G+V   G  + ++ SG I + V   +  RL  ++ G++++I  ++P+
Sbjct: 4   ILGIDPGSRITGYGVVRQQGRQISYLGSGCIRTVV-DDIPGRLKLIFAGVSEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ ++A + LKLGQAR  AI++     +PV EYA   +K+ V+G G  +K Q+
Sbjct: 63  CVAIEQVFMARNADSALKLGQARGAAIVAAVNQSLPVFEYAARQVKQTVVGTGAAEKSQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
             M++ L+        DAADALAIA+ H + + +
Sbjct: 123 QHMVRSLLKLPANPQADAADALAIAITHCHFSQN 156


>gi|323180660|gb|EFZ66205.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           1180]
          Length = 161

 Score = 95.5 bits (236), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 46/118 (38%), Positives = 76/118 (64%), Gaps = 1/118 (0%)

Query: 17  TGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVN 76
           TG+G++   G  L ++ SG I + V   L  RL  +Y G+T++I  ++P+  A+EQVF+ 
Sbjct: 2   TGYGVIRQVGRQLSYLGSGCIRTKV-DDLPSRLKLIYAGVTEIITQFQPDYFAIEQVFMA 60

Query: 77  KDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLM 134
           K+A + LKLGQAR +AI++     +PV EYA   +K+ V+G+G  +K Q+  M++ L+
Sbjct: 61  KNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQVQHMVRTLL 118


>gi|307565534|ref|ZP_07628014.1| crossover junction endodeoxyribonuclease RuvC [Prevotella amnii
           CRIS 21A-A]
 gi|307345693|gb|EFN91050.1| crossover junction endodeoxyribonuclease RuvC [Prevotella amnii
           CRIS 21A-A]
          Length = 193

 Score = 95.5 bits (236), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 52/156 (33%), Positives = 85/156 (54%), Gaps = 3/156 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG    G+G++   G+    +  G I     + +  RL ++++ +T +I+ + P+
Sbjct: 12  ILGIDPGTNVMGYGLLRAVGNKANLIVMGIIDMRKEKDIYLRLGKIFDRVTGIIEEYLPD 71

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E  F  K+  + LKLG+A+ +AI +     IP+ EYAP  IK A+ G G   K+Q+
Sbjct: 72  ELAIEAPFFGKNVQSMLKLGRAQGVAIAAAIHHDIPIHEYAPLKIKMAITGNGAASKEQV 131

Query: 127 HMMLKMLM---PESFFKGKDAADALAIAVCHAYHAN 159
             ML+ L+    +      DA DA+  A CH   +N
Sbjct: 132 ANMLQKLLHLRDDQMPHFMDATDAVGAAYCHFLQSN 167


>gi|258648397|ref|ZP_05735866.1| crossover junction endodeoxyribonuclease RuvC [Prevotella tannerae
           ATCC 51259]
 gi|260851567|gb|EEX71436.1| crossover junction endodeoxyribonuclease RuvC [Prevotella tannerae
           ATCC 51259]
          Length = 235

 Score = 95.5 bits (236), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 55/159 (34%), Positives = 88/159 (55%), Gaps = 5/159 (3%)

Query: 1   MRKSIR--IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTD 58
           MRK+I   I+GIDPG    G+G++ +  + +   + G I     + +  +L +++E +  
Sbjct: 27  MRKTIDKVILGIDPGTNLLGYGVLHIRNNKVEMEAMGVIDLRKVKDVYLKLGRIHERIIG 86

Query: 59  VIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGV 118
           +I ++ P+E A+E  F  K+  + LKLG+A+ +AI +     IP+ EYAP  IK A+ G 
Sbjct: 87  IIDSFHPDELAIEAPFFGKNIQSMLKLGRAQGVAIAAAISRDIPIHEYAPLKIKMAITGN 146

Query: 119 GHGDKKQIHMMLKMLM---PESFFKGKDAADALAIAVCH 154
           G   K+Q+   LK ++    E      DA DALA A CH
Sbjct: 147 GQASKEQVADFLKRILSLKEEQMLSYMDATDALAAAYCH 185


>gi|88705604|ref|ZP_01103314.1| Crossover junction endodeoxyribonuclease RuvC [Congregibacter
           litoralis KT71]
 gi|88700117|gb|EAQ97226.1| Crossover junction endodeoxyribonuclease RuvC [Congregibacter
           litoralis KT71]
          Length = 172

 Score = 95.5 bits (236), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 51/128 (39%), Positives = 80/128 (62%), Gaps = 1/128 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG ++TG+GI+        +++SG ++   + +L  RL  + E + ++++   P 
Sbjct: 4   ILGIDPGSQKTGFGIISTLNGKNSYITSG-VIRLPKGALPERLRIIAESVAELVELHGPT 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E +VEQVF+ K A A LKLGQAR  AI+   L  + VSEY+   IK++V+G G  DK Q+
Sbjct: 63  ELSVEQVFLAKSADAALKLGQARGAAIVPCVLRGLEVSEYSARQIKQSVVGTGAADKAQV 122

Query: 127 HMMLKMLM 134
             M+K L+
Sbjct: 123 QHMVKALL 130


>gi|288802195|ref|ZP_06407635.1| crossover junction endodeoxyribonuclease RuvC [Prevotella
           melaninogenica D18]
 gi|302346585|ref|YP_003814883.1| crossover junction endodeoxyribonuclease RuvC [Prevotella
           melaninogenica ATCC 25845]
 gi|288335162|gb|EFC73597.1| crossover junction endodeoxyribonuclease RuvC [Prevotella
           melaninogenica D18]
 gi|302150436|gb|ADK96697.1| crossover junction endodeoxyribonuclease RuvC [Prevotella
           melaninogenica ATCC 25845]
          Length = 191

 Score = 95.5 bits (236), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 53/151 (35%), Positives = 83/151 (54%), Gaps = 3/151 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           ++GIDPG    G+G++ V G+    V  G I     + +  RL +++E +T +I  + P+
Sbjct: 12  LLGIDPGTNVMGYGVLRVCGNKAELVVMGVIDMRREKDVYLRLGRIFERVTGIIDEYLPD 71

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E AVE  F  K+  + LKLG+A+ + I +     +P+ EYAP  IK A+ G G   K+Q+
Sbjct: 72  EVAVEAPFFGKNVQSMLKLGRAQGVVIAAAINHDVPIQEYAPLKIKMAITGNGSASKEQV 131

Query: 127 HMMLKMLM---PESFFKGKDAADALAIAVCH 154
             ML+ L+    +      DA DA+A A CH
Sbjct: 132 AGMLQKLLHLRDDQMPHFMDATDAVAAAYCH 162


>gi|150010366|ref|YP_001305109.1| Holliday junction resolvase [Parabacteroides distasonis ATCC 8503]
 gi|298374762|ref|ZP_06984720.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides sp.
           3_1_19]
 gi|149938790|gb|ABR45487.1| crossover junction endodeoxyribonuclease RuvC [Parabacteroides
           distasonis ATCC 8503]
 gi|298269130|gb|EFI10785.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides sp.
           3_1_19]
          Length = 185

 Score = 95.5 bits (236), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 88/163 (53%), Gaps = 3/163 (1%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M K   I+GIDPG    G+GI+ + G+     + G +     +    RL +++E +  +I
Sbjct: 1   MIKDRIILGIDPGTIVMGYGILKIEGNKPKLEAMGILQLNKYEDHYLRLRKIFERVLALI 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             + P+E A+E  F  K+  + LKLG+A+ +A+ +     +P+ EYAP  IK ++ G G+
Sbjct: 61  DQYHPDELAIEAPFFGKNVQSMLKLGRAQGVAMAAALERDVPIFEYAPLKIKLSITGNGN 120

Query: 121 GDKKQIHMMLKMLMP---ESFFKGKDAADALAIAVCHAYHANS 160
             K+Q+  ML+  +    ES     DA D LA AVCH +  N+
Sbjct: 121 AAKEQVAGMLQRYLKIPDESMLPQLDATDGLAAAVCHYFQTNN 163


>gi|312892426|ref|ZP_07751921.1| crossover junction endodeoxyribonuclease RuvC [Mucilaginibacter
           paludis DSM 18603]
 gi|311295210|gb|EFQ72384.1| crossover junction endodeoxyribonuclease RuvC [Mucilaginibacter
           paludis DSM 18603]
          Length = 227

 Score = 95.1 bits (235), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 54/157 (34%), Positives = 90/157 (57%), Gaps = 11/157 (7%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG    G+G++   G  +  +S G +        A +L +++E    +I  ++P+
Sbjct: 34  ILGIDPGTAVMGYGLIKETGPRIELISLGVVKMEHLDDHALKLQRIFEKTLSLIDQYKPD 93

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALAR-IPVSEYAPNTIKKAVIGVGHGDKKQ 125
             A+E  F  K+    LKLG+A+ +A ++ AL+R +P+ EYAP  IK+++ G G+  K+Q
Sbjct: 94  CMALEAPFYGKNIQVMLKLGRAQGVA-MAAALSRNLPICEYAPRKIKQSITGNGNATKEQ 152

Query: 126 IHMMLKMLM-----PESFFKGKDAADALAIAVCHAYH 157
           +  ML+ L+     P+      DA D LA+AVCHA+ 
Sbjct: 153 VAAMLQTLLKFTETPQFL----DATDGLAVAVCHAFQ 185


>gi|108757135|ref|YP_633129.1| crossover junction endodeoxyribonuclease RuvC [Myxococcus xanthus
           DK 1622]
 gi|122980861|sp|Q1D2J4|RUVC_MYXXD RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|108461015|gb|ABF86200.1| crossover junction endodeoxyribonuclease RuvC [Myxococcus xanthus
           DK 1622]
          Length = 191

 Score = 95.1 bits (235), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 60/158 (37%), Positives = 88/158 (55%), Gaps = 2/158 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++G+DPG R  G+G+V+     L  V  G I       L+ RL  L+  LT  +  +R
Sbjct: 1   MRVLGVDPGSRFMGFGVVEEKRGRLVHVGHGVIKGDPALPLSDRLRDLHGALTAALVKYR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P   AVE VF  ++A + L LG AR +A+L+ A A +PV EYAP  +KKAV   G   K 
Sbjct: 61  PAAVAVEGVFTFRNARSALVLGHARGVALLAAAQAGLPVFEYAPAKVKKAVGAGGADGKD 120

Query: 125 QIHMMLKMLMP--ESFFKGKDAADALAIAVCHAYHANS 160
            +  M++  +    S  +  DA+DALA+A+CH  H  +
Sbjct: 121 AVARMVRTFLELDASVLERADASDALAVALCHLNHGRA 158


>gi|78779448|ref|YP_397560.1| Holliday junction endonuclease RuvC [Prochlorococcus marinus str.
           MIT 9312]
 gi|123554117|sp|Q31AH1|RUVC_PROM9 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|78712947|gb|ABB50124.1| Holliday junction endonuclease RuvC [Prochlorococcus marinus str.
           MIT 9312]
          Length = 157

 Score = 95.1 bits (235), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 53/150 (35%), Positives = 87/150 (58%), Gaps = 2/150 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RIIGIDPGL R G+GI+++  D    +  G I +   +    RL ++++ L ++I +W+
Sbjct: 1   MRIIGIDPGLARVGYGIIEIKNDKKILLDCGVIETGKEKKEEDRLYEIFKDLNELISHWK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P  AAVE+ F  + +  T+ + QAR + ++  A  +I +SEY+P  IK  + G G   KK
Sbjct: 61  PNLAAVEKFFFYRSS-TTISVVQARGVIMMVLASKKINISEYSPAQIKLTIAGSGKASKK 119

Query: 125 QI-HMMLKMLMPESFFKGKDAADALAIAVC 153
           ++   ++  L      K  D+ADALAIA+ 
Sbjct: 120 EVLDAVMYNLELNKPPKPDDSADALAIALT 149


>gi|197121425|ref|YP_002133376.1| crossover junction endodeoxyribonuclease RuvC [Anaeromyxobacter sp.
           K]
 gi|238689869|sp|B4UFX9|RUVC_ANASK RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|196171274|gb|ACG72247.1| crossover junction endodeoxyribonuclease RuvC [Anaeromyxobacter sp.
           K]
          Length = 185

 Score = 95.1 bits (235), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 66/151 (43%), Positives = 87/151 (57%), Gaps = 8/151 (5%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           ++GIDPG RR G+G+V   G  L  V SG +V      +A RL ++ EGL  +I   RP 
Sbjct: 3   VLGIDPGSRRCGYGVVAREGARLTVVESGVLVPG-DLPMAQRLGRILEGLDALIARARPV 61

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           EA+VE VF      + L LGQAR +A+ + A A +PV EYAP+ +K A  G G   K Q+
Sbjct: 62  EASVESVFSGASPRSALVLGQARGVALAAAARAGLPVFEYAPSEVKLAFTGNGRAGKDQM 121

Query: 127 HMMLKMLM---PESFFKGKDAADALAIAVCH 154
               +ML+   P+      D ADALAIAVCH
Sbjct: 122 LRTARMLLGAAPDL----SDEADALAIAVCH 148


>gi|325954429|ref|YP_004238089.1| Crossover junction endodeoxyribonuclease ruvC [Weeksella virosa DSM
           16922]
 gi|323437047|gb|ADX67511.1| Crossover junction endodeoxyribonuclease ruvC [Weeksella virosa DSM
           16922]
          Length = 182

 Score = 95.1 bits (235), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 86/154 (55%), Gaps = 1/154 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG    G+G++ +    L  ++   ++     +   +L +++E    +I  + P+
Sbjct: 5   ILGIDPGTTVMGFGVIAIENKQLKLITLDELLLHKLPNHEMKLKRIFEKTLAIIDQYHPD 64

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E  F  K+  + LKLG+A+ +A+ +     IP++EY+P  IK A+ G G+  K+ +
Sbjct: 65  ELAIEAPFFGKNVQSMLKLGRAQGVAMAAGLYREIPITEYSPKKIKMAITGNGNASKEMV 124

Query: 127 HMMLKMLMP-ESFFKGKDAADALAIAVCHAYHAN 159
             MLK L+  +   K  DA D LA AVCH ++ N
Sbjct: 125 AGMLKNLLGLKEIPKRLDATDGLAAAVCHYFNMN 158


>gi|34763629|ref|ZP_00144559.1| Crossover junction endodeoxyribonuclease ruvC [Fusobacterium
           nucleatum subsp. vincentii ATCC 49256]
 gi|27886706|gb|EAA23849.1| Crossover junction endodeoxyribonuclease ruvC [Fusobacterium
           nucleatum subsp. vincentii ATCC 49256]
          Length = 190

 Score = 95.1 bits (235), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 51/151 (33%), Positives = 80/151 (52%), Gaps = 1/151 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R+IGIDPG    G+GI+D   +    V  G +++    S   RL  +Y  +  ++K ++
Sbjct: 1   MRVIGIDPGTAIVGYGIIDYDKNKYSIVDYGVVLTSKDLSTEERLEIVYSEIDKILKKYK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           PE  A+E +F  K+    + + QAR + +L+     I +S Y P  +K  + G G  +KK
Sbjct: 61  PEFMAIEDLFYFKNNKTVISVAQARGVILLAGKQNNIAMSSYTPLQVKIGITGYGKAEKK 120

Query: 125 QIHMML-KMLMPESFFKGKDAADALAIAVCH 154
           Q+  M+ K L      K  DAADALAI + H
Sbjct: 121 QVQQMVQKFLGLSEIPKPDDAADALAICITH 151


>gi|322832434|ref|YP_004212461.1| crossover junction endodeoxyribonuclease RuvC [Rahnella sp. Y9602]
 gi|321167635|gb|ADW73334.1| crossover junction endodeoxyribonuclease RuvC [Rahnella sp. Y9602]
          Length = 173

 Score = 95.1 bits (235), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 60/154 (38%), Positives = 95/154 (61%), Gaps = 1/154 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+GI+   G  L ++ SG I + V   +  RL  +Y G++++I  ++P+
Sbjct: 4   ILGIDPGSRITGYGIIRQTGRQLSYLGSGCIRTVV-DDMPGRLKLIYAGVSEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+E VF+ K+A + LKLGQAR  AI++     +PV EYA   +K+ V+G G  +K Q+
Sbjct: 63  FFAIESVFMAKNADSALKLGQARGAAIVAAVNQDLPVFEYAARQVKQTVVGTGAAEKAQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
             M++ ++        DAADALAIA+ H + + +
Sbjct: 123 QHMVRSILKLPANPQADAADALAIAITHCHMSQN 156


>gi|237741150|ref|ZP_04571631.1| crossover junction endodeoxyribonuclease ruvC [Fusobacterium sp.
           4_1_13]
 gi|256846283|ref|ZP_05551740.1| crossover junction endodeoxyribonuclease RuvC [Fusobacterium sp.
           3_1_36A2]
 gi|294784633|ref|ZP_06749922.1| crossover junction endodeoxyribonuclease RuvC [Fusobacterium sp.
           3_1_27]
 gi|229430682|gb|EEO40894.1| crossover junction endodeoxyribonuclease ruvC [Fusobacterium sp.
           4_1_13]
 gi|256718052|gb|EEU31608.1| crossover junction endodeoxyribonuclease RuvC [Fusobacterium sp.
           3_1_36A2]
 gi|294487849|gb|EFG35208.1| crossover junction endodeoxyribonuclease RuvC [Fusobacterium sp.
           3_1_27]
          Length = 190

 Score = 95.1 bits (235), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 51/151 (33%), Positives = 80/151 (52%), Gaps = 1/151 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R+IGIDPG    G+GI+D   +    V  G +++    S   RL  +Y  +  ++K ++
Sbjct: 1   MRVIGIDPGTAIVGYGIIDYDKNKYSIVDYGVVLTSKDLSTEERLEIVYSEIDKILKKYK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           PE  A+E +F  K+    + + QAR + +L+     I +S Y P  +K  + G G  +KK
Sbjct: 61  PEFMAIEDLFYFKNNKTVISVAQARGVILLAGKQNNIAMSSYTPLQVKIGITGYGKAEKK 120

Query: 125 QIHMML-KMLMPESFFKGKDAADALAIAVCH 154
           Q+  M+ K L      K  DAADALAI + H
Sbjct: 121 QVQQMVQKFLGLSEIPKPDDAADALAICITH 151


>gi|323345431|ref|ZP_08085654.1| crossover junction endoribonuclease subunit C [Prevotella oralis
           ATCC 33269]
 gi|323093545|gb|EFZ36123.1| crossover junction endoribonuclease subunit C [Prevotella oralis
           ATCC 33269]
          Length = 194

 Score = 95.1 bits (235), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 54/151 (35%), Positives = 81/151 (53%), Gaps = 3/151 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG    G+G++ V G     V+ G I          RL ++++ +T +I  + P+
Sbjct: 15  ILGIDPGTNVMGYGVIRVYGRTAQMVAMGVIDMRRELDPYIRLGKIFDRVTGIIDEYLPD 74

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E  F  K+  + LKLG+A+ +AI +     +P+ EYAP  IK A+ G G   K+Q+
Sbjct: 75  EMAIEAPFFGKNVQSMLKLGRAQGVAIAAAIHHDVPIHEYAPLKIKMAITGQGQASKEQV 134

Query: 127 HMMLKMLMP---ESFFKGKDAADALAIAVCH 154
             ML+ L+        K  DA DAL  A CH
Sbjct: 135 AGMLQRLLRINGNDMPKFMDATDALGAAYCH 165


>gi|224023778|ref|ZP_03642144.1| hypothetical protein BACCOPRO_00494 [Bacteroides coprophilus DSM
           18228]
 gi|224017000|gb|EEF75012.1| hypothetical protein BACCOPRO_00494 [Bacteroides coprophilus DSM
           18228]
          Length = 189

 Score = 95.1 bits (235), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 58/151 (38%), Positives = 84/151 (55%), Gaps = 3/151 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG    G+G++ V G     ++ G I          +L  +YE +  VI ++ P+
Sbjct: 10  ILGIDPGTNIMGYGVLKVTGTRPQVMTLGVIDLRKCSDPYLKLKHIYERVQGVITSFLPD 69

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E  F  K+  + LKLG+A+ +AI++     IPV+EYAP  IK A+ G G   K+Q+
Sbjct: 70  ELAIEAPFFGKNVQSMLKLGRAQGVAIVAALCRDIPVTEYAPLKIKMAITGNGQASKEQV 129

Query: 127 HMMLKMLM--PESFFKG-KDAADALAIAVCH 154
             MLK ++  P S      DA DALA A CH
Sbjct: 130 ADMLKRMLHIPASEMGPFMDATDALAAAYCH 160


>gi|190575570|ref|YP_001973415.1| Holliday junction resolvase [Stenotrophomonas maltophilia K279a]
 gi|229558764|sp|B2FRN7|RUVC_STRMK RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|190013492|emb|CAQ47127.1| putative crossover junction endodeoxyribonuclease [Stenotrophomonas
           maltophilia K279a]
          Length = 173

 Score = 95.1 bits (235), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 62/152 (40%), Positives = 93/152 (61%), Gaps = 1/152 (0%)

Query: 6   RIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           RI+GIDPG +RTG GI+DV A   + +V    +V         R+  L  GL D+ + + 
Sbjct: 3   RILGIDPGSQRTGVGIIDVDATGRVSYVHHQPLVLLGADDFPQRMKLLVLGLADLCREYE 62

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+E A+E+VF+ ++  + LKLGQAR  AI +  L  +PV EYA + IK AV+G G  +K+
Sbjct: 63  PQEVAIERVFMARNPDSALKLGQARGAAISAVVLRDLPVHEYAASEIKLAVVGRGGAEKQ 122

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
           Q+  M+ +++        DAADALA+A+ HA+
Sbjct: 123 QVQHMVGLMLNLKIKLQADAADALAVAITHAH 154


>gi|320539866|ref|ZP_08039525.1| component of RuvABC resolvasome, endonuclease [Serratia symbiotica
           str. Tucson]
 gi|320030052|gb|EFW12072.1| component of RuvABC resolvasome, endonuclease [Serratia symbiotica
           str. Tucson]
          Length = 173

 Score = 95.1 bits (235), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 59/150 (39%), Positives = 95/150 (63%), Gaps = 1/150 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L +++SG I + V + +  RL  +Y G++++I  ++P+
Sbjct: 4   ILGIDPGSRITGYGLIRQQGRQLTYIASGCIRTVV-EDMPMRLKLIYAGVSEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+  + LKLGQA  +AI++     + V EYA   +K+ V+G G  +K Q+
Sbjct: 63  FFAIEQVFMAKNPDSALKLGQACGVAIVAAVNQNLDVFEYAARQVKQTVVGTGAAEKAQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAY 156
             M++ L+  S     DAADALAIA+ H +
Sbjct: 123 QHMVRSLLKLSANPRADAADALAIAITHCH 152


>gi|160872220|ref|ZP_02062352.1| crossover junction endodeoxyribonuclease RuvC [Rickettsiella
           grylli]
 gi|159121019|gb|EDP46357.1| crossover junction endodeoxyribonuclease RuvC [Rickettsiella
           grylli]
          Length = 184

 Score = 94.7 bits (234), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 61/149 (40%), Positives = 102/149 (68%), Gaps = 1/149 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG   TG+G++ + G  L ++ SG I   V  + + RL +++ GL  +++++ P 
Sbjct: 17  ILGIDPGSCITGYGLIQMEGSELNYLDSGCI-KVVNVAFSERLEKIFTGLQKLLQDYTPH 75

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           EAA+EQVF++ +  A LKLGQAR +A+++ ALA++ + EY+   +K++V+G G   K+Q+
Sbjct: 76  EAAIEQVFMHINPHAALKLGQARGVALVAAALAKLRICEYSARQVKQSVVGYGAASKQQV 135

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHA 155
             M+++L+  +     DAADALAIA+CHA
Sbjct: 136 QHMVRVLLHLNCTPSVDAADALAIAICHA 164


>gi|332884766|gb|EGK05022.1| crossover junction endodeoxyribonuclease ruvC [Dysgonomonas mossii
           DSM 22836]
          Length = 186

 Score = 94.7 bits (234), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 91/158 (57%), Gaps = 5/158 (3%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG +  G+GI+ V  +    ++ G +          +L +++E +  +I  + P+
Sbjct: 8   ILGIDPGTQVMGYGILRVVNNKPELLAMGVLQLSKYDDHYLKLRRIFERIIGLIDEFLPD 67

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALAR-IPVSEYAPNTIKKAVIGVGHGDKKQ 125
           E A+E  F  K+  + LKLG+A+ +A ++ AL+R IP+ EYAP  IK ++ G G   K+Q
Sbjct: 68  ELAIEAPFFGKNVQSMLKLGRAQGVA-MAAALSRDIPIFEYAPLKIKMSITGNGRAAKEQ 126

Query: 126 IHMMLKMLM--PESFFKGK-DAADALAIAVCHAYHANS 160
           +  ML+  +  P+S    + DA D LA AVCH +  N+
Sbjct: 127 VAYMLQHFLHIPDSNMPTQMDATDGLAAAVCHYFQTNN 164


>gi|332520041|ref|ZP_08396505.1| crossover junction endodeoxyribonuclease RuvC [Lacinutrix algicola
           5H-3-7-4]
 gi|332044600|gb|EGI80794.1| crossover junction endodeoxyribonuclease RuvC [Lacinutrix algicola
           5H-3-7-4]
          Length = 184

 Score = 94.7 bits (234), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 56/162 (34%), Positives = 85/162 (52%), Gaps = 3/162 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG    G+G++ V    + F+    +          +L  ++E   ++I    P+
Sbjct: 7   ILGIDPGTTIMGFGLIKVVNKKMHFLQLNELDLKKYDDHYLKLKLIFERTIELIDTHHPD 66

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E  F  K+  + LKLG+A+ +A+ +     IPV+EYAP  IK A+ G G+  K+Q+
Sbjct: 67  EIAIEAPFFGKNVQSMLKLGRAQGVAMAAGLSREIPVTEYAPKKIKMAITGNGNASKEQV 126

Query: 127 HMMLK-MLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
             ML+ ML  +   K  DA D L  AVCH Y  N G  +I  
Sbjct: 127 AKMLQGMLGIKKLPKNLDAMDGLGAAVCHFY--NQGRVEIGK 166


>gi|255534542|ref|YP_003094913.1| Holliday junction resolvase [Flavobacteriaceae bacterium 3519-10]
 gi|255340738|gb|ACU06851.1| Crossover junction endodeoxyribonuclease ruvC [Flavobacteriaceae
           bacterium 3519-10]
          Length = 184

 Score = 94.7 bits (234), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 91/163 (55%), Gaps = 4/163 (2%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M+    I+GIDPG    G+G++ V    +  +S   ++     +   +L  +++    +I
Sbjct: 1   MQTEKIILGIDPGTTIMGFGLISVVKGKMEMLSIHELILKKYPNHETKLKVIFDRTLALI 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             + P+E A+E  F  K+  + LKLG+A+ +A+ +     IP++EY+P  IK A+ G G+
Sbjct: 61  DEFHPDEVALEAPFFGKNVQSMLKLGRAQGVAMAAALHRDIPITEYSPKKIKMAITGNGN 120

Query: 121 GDKKQIHMMLKMLMPESFFKGK--DAADALAIAVCHAYHANSG 161
             K+Q+  ML+ L+    F  K  DA+D LA+AVCH  H NSG
Sbjct: 121 ASKEQVAGMLQSLLNLKEFPTKYLDASDGLAVAVCH--HFNSG 161


>gi|189424312|ref|YP_001951489.1| Holliday junction resolvase [Geobacter lovleyi SZ]
 gi|238692134|sp|B3E789|RUVC_GEOLS RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|189420571|gb|ACD94969.1| crossover junction endodeoxyribonuclease RuvC [Geobacter lovleyi
           SZ]
          Length = 178

 Score = 94.7 bits (234), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 60/150 (40%), Positives = 94/150 (62%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPG R TG+G+V+  G  L  + +G + +   +    RL  ++EGL+ VI  + 
Sbjct: 1   MRVLGIDPGSRITGYGLVEQHGSRLVHLDNGAVFTDKAKDFPDRLRLIFEGLSRVIAEYA 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  AVE V+V+++  A LKLGQAR  AI +   A +PV EY  + +K+AV+G G   K+
Sbjct: 61  PDAVAVEDVYVSENVRAALKLGQARGAAIAAAVHAGLPVFEYTASQVKQAVVGQGRAGKE 120

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCH 154
           Q+  M+K L+        DA+DA+A+A+CH
Sbjct: 121 QVQKMVKALLGLPEIAQADASDAVAVAICH 150


>gi|284044633|ref|YP_003394973.1| crossover junction endodeoxyribonuclease RuvC [Conexibacter woesei
           DSM 14684]
 gi|283948854|gb|ADB51598.1| crossover junction endodeoxyribonuclease RuvC [Conexibacter woesei
           DSM 14684]
          Length = 164

 Score = 94.7 bits (234), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 52/153 (33%), Positives = 81/153 (52%), Gaps = 1/153 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           ++GIDPG   TG+G+V      +  +  G I +   Q+L  RL  ++  L ++I   RP 
Sbjct: 3   VLGIDPGTANTGYGVVAQRRGRVVALDGGVIETPAGQALERRLATIHRRLCELIAEHRPV 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             AVE ++   +A +   +GQAR + +L+     +  S Y P  IK AV G G  +K Q+
Sbjct: 63  AVAVEDLYFGANARSAFAVGQARGVVLLAAGQHDLACSSYTPQQIKSAVCGSGRAEKLQV 122

Query: 127 HMMLKMLMPESFFKGKD-AADALAIAVCHAYHA 158
             M++ L+  +     D AADALA+A+CH   A
Sbjct: 123 QQMVQRLLSLTELPRPDHAADALAVAICHTNRA 155


>gi|189499517|ref|YP_001958987.1| crossover junction endodeoxyribonuclease RuvC [Chlorobium
           phaeobacteroides BS1]
 gi|189494958|gb|ACE03506.1| crossover junction endodeoxyribonuclease RuvC [Chlorobium
           phaeobacteroides BS1]
          Length = 186

 Score = 94.7 bits (234), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 57/151 (37%), Positives = 78/151 (51%), Gaps = 7/151 (4%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           +IGIDPG  +TG+GIV   GD    VS G I    RQ +  R+  +Y+ L  +I   RP 
Sbjct: 2   VIGIDPGSVKTGYGIVRSEGDTFSLVSCGVIRLSSRQCIPERIKIIYDTLEALIAQHRPA 61

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+E  +VN++A + LKLGQ R   +         + EYAP  +KK + G G   K Q+
Sbjct: 62  RLALETAYVNRNAQSALKLGQVRGAIVALAMNTGTGLHEYAPREVKKMLTGRGAASKDQV 121

Query: 127 HMM----LKMLMPESFFKGKDAADALAIAVC 153
             M    L ++ P    K  D  DAL IA+C
Sbjct: 122 AYMARHFLNVVEP---IKPHDITDALGIALC 149


>gi|225018934|ref|ZP_03708126.1| hypothetical protein CLOSTMETH_02885 [Clostridium methylpentosum
           DSM 5476]
 gi|224948278|gb|EEG29487.1| hypothetical protein CLOSTMETH_02885 [Clostridium methylpentosum
           DSM 5476]
          Length = 180

 Score = 94.7 bits (234), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 83/161 (51%), Gaps = 1/161 (0%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M + ++IIGIDPG    GWG+V         +  G I +        RL  +Y  L  ++
Sbjct: 1   MDEQMKIIGIDPGYAIVGWGVVSYNRTKFTTLDYGAITTHASMPFEQRLLAVYNELDLLL 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
           +  +P+  +VE++F + +    + + QAR + +L+     IP  +Y P  +K +V+G G 
Sbjct: 61  RMHKPDAMSVEKLFFSNNQKTAIDVAQARGVILLAATQHGIPCYQYTPLQVKLSVVGYGK 120

Query: 121 GDKKQIHMMLKMLMP-ESFFKGKDAADALAIAVCHAYHANS 160
             K Q+  M K L+  +   K  D ADALAIA+ HA+  NS
Sbjct: 121 AVKSQVMEMTKRLLHLKEVPKPDDTADALAIAITHAHSFNS 161


>gi|226226040|ref|YP_002760146.1| Holliday junction endonuclease RuvC [Gemmatimonas aurantiaca T-27]
 gi|226089231|dbj|BAH37676.1| Holliday junction endonuclease RuvC [Gemmatimonas aurantiaca T-27]
          Length = 181

 Score = 94.4 bits (233), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 47/134 (35%), Positives = 75/134 (55%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M++   ++GIDPG   TG+G+V   G     V  G I +  +  L  RL  ++EG+ ++I
Sbjct: 1   MKQPSLVLGIDPGTAVTGYGVVASDGRATTLVECGVIRTNAKDPLPSRLLDIHEGVRELI 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
              RP+  ++E VF  ++   TL LG AR + +L+   A + + EYAP  IKKA+ G G 
Sbjct: 61  ARHRPDTLSIEDVFFARNVRTTLVLGHARGVILLAGQQAELTIHEYAPTEIKKAITGRGG 120

Query: 121 GDKKQIHMMLKMLM 134
             K+Q+  M+  L+
Sbjct: 121 ATKEQVQYMVARLL 134


>gi|198274694|ref|ZP_03207226.1| hypothetical protein BACPLE_00850 [Bacteroides plebeius DSM 17135]
 gi|198272141|gb|EDY96410.1| hypothetical protein BACPLE_00850 [Bacteroides plebeius DSM 17135]
          Length = 189

 Score = 94.4 bits (233), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 58/153 (37%), Positives = 86/153 (56%), Gaps = 7/153 (4%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTI--VSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           I+GIDPG    G+G++ V G     ++ G I    C    L  +L  +YE +  +I ++ 
Sbjct: 10  ILGIDPGTNIMGYGVLKVTGVKPEVMTLGVIDLRKCTDSYL--KLKHIYERVQGIISSYL 67

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+E A+E  F  K+  + LKLG+A+ +AI++     IPV+EYAP  IK A+ G G   K+
Sbjct: 68  PDELAIEAPFFGKNVQSMLKLGRAQGVAIVAALTRDIPVTEYAPLKIKMAITGNGQASKE 127

Query: 125 QIHMMLKMLM--PESFFKG-KDAADALAIAVCH 154
           Q+  MLK ++  P+S      DA DAL  A CH
Sbjct: 128 QVADMLKRMLHIPDSEMGPFMDATDALGAAYCH 160


>gi|260592445|ref|ZP_05857903.1| crossover junction endodeoxyribonuclease RuvC [Prevotella veroralis
           F0319]
 gi|260535491|gb|EEX18108.1| crossover junction endodeoxyribonuclease RuvC [Prevotella veroralis
           F0319]
          Length = 191

 Score = 94.4 bits (233), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 52/155 (33%), Positives = 86/155 (55%), Gaps = 11/155 (7%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           ++GIDPG    G+G++ V G+ +  +  G I     + +  RL ++++ ++ +I+ + P+
Sbjct: 12  LLGIDPGTNVMGYGVLRVRGNKVELIVMGVIDMRREKDVYLRLGKIFDRVSGIIEEYLPD 71

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E  F  K+  + LKLG+A+ +AI +     +P+ EYAP  IK A+ G G   K+Q+
Sbjct: 72  ELAIEAPFFGKNVQSMLKLGRAQGVAIAAAIHHDVPIQEYAPLKIKMAITGNGSASKEQV 131

Query: 127 HMMLKML-------MPESFFKGKDAADALAIAVCH 154
             ML+ L       MP       DA DA+A A CH
Sbjct: 132 AGMLQKLLHLRDNQMPHFM----DATDAVAAAYCH 162


>gi|21674482|ref|NP_662547.1| Holliday junction resolvase [Chlorobium tepidum TLS]
 gi|27923852|sp|Q8KBW8|RUVC_CHLTE RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|21647671|gb|AAM72889.1| Holliday junction resolvase [Chlorobium tepidum TLS]
          Length = 186

 Score = 94.4 bits (233), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 54/148 (36%), Positives = 78/148 (52%), Gaps = 1/148 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           ++GIDPG R+TG+G++         +  G +      +L  R+ QL  GL +VI+  +PE
Sbjct: 3   VLGIDPGSRKTGYGVIAETAAGYRVLGCGLVRPRAADTLHERISQLCAGLDEVIEQLKPE 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+E  FV ++  + L LGQ R   + +     +PV EYAP  IK +V G G   K+Q+
Sbjct: 63  AVALETAFVGRNVRSALILGQVRGAVLATVMRHSLPVREYAPREIKLSVTGTGSACKEQV 122

Query: 127 HMML-KMLMPESFFKGKDAADALAIAVC 153
             ML +ML      K  D  DAL IA C
Sbjct: 123 AAMLSRMLELGGELKPLDVTDALGIAYC 150


>gi|145220235|ref|YP_001130944.1| crossover junction endodeoxyribonuclease RuvC [Prosthecochloris
           vibrioformis DSM 265]
 gi|189046073|sp|A4SG33|RUVC_PROVI RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|145206399|gb|ABP37442.1| crossover junction endodeoxyribonuclease RuvC [Chlorobium
           phaeovibrioides DSM 265]
          Length = 189

 Score = 94.4 bits (233), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 56/157 (35%), Positives = 85/157 (54%), Gaps = 2/157 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAG-DNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           ++GIDPG   TG+G+V   G ++   +S G I    R+S A R+ ++Y  L+++I   +P
Sbjct: 3   VLGIDPGSLATGYGVVSGDGRESFRALSCGLIRLHPRKSHAVRVGEIYRELSELIGELKP 62

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
           +  A+E  FV K+  + LKLGQ R   +     + +P+ EYAP  +K AV G G   K+Q
Sbjct: 63  DRVAIETAFVGKNVQSALKLGQVRGAIMALSFNSGVPIFEYAPREVKSAVTGRGGAAKEQ 122

Query: 126 IHMML-KMLMPESFFKGKDAADALAIAVCHAYHANSG 161
           +  M+  ML   S  K  D  DAL +A+C       G
Sbjct: 123 VAFMVASMLSLSSVPKPFDVTDALGVALCDLLRCGGG 159


>gi|157413524|ref|YP_001484390.1| Holliday junction resolvase [Prochlorococcus marinus str. MIT 9215]
 gi|167012681|sp|A8G5C3|RUVC_PROM2 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|157388099|gb|ABV50804.1| Crossover junction endodeoxyribonuclease RuvC [Prochlorococcus
           marinus str. MIT 9215]
          Length = 157

 Score = 94.4 bits (233), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 54/154 (35%), Positives = 87/154 (56%), Gaps = 8/154 (5%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RIIGIDPGL R G+GI+++  +    +  G I +   +    RL ++++ L ++I +W 
Sbjct: 1   MRIIGIDPGLARVGYGIIEIENEKKILLDCGVIETGKDKKEEDRLYEIFKDLNELINHWN 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P  AAVE+ F  + +  T+ + QAR + ++  A  +I VSEY+P  IK  + G G   KK
Sbjct: 61  PTSAAVEKFFFYRSS-TTISVVQARGVIMMVLASKKIQVSEYSPAQIKLTIAGSGKASKK 119

Query: 125 Q----IHMMLKMLMPESFFKGKDAADALAIAVCH 154
           +    +   L++  P    K  D+ADALAIA+  
Sbjct: 120 EVLDAVMFSLELKKPP---KPDDSADALAIALTK 150


>gi|325105437|ref|YP_004275091.1| crossover junction endodeoxyribonuclease RuvC [Pedobacter saltans
           DSM 12145]
 gi|324974285|gb|ADY53269.1| crossover junction endodeoxyribonuclease RuvC [Pedobacter saltans
           DSM 12145]
          Length = 188

 Score = 94.4 bits (233), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 86/156 (55%), Gaps = 9/156 (5%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG    G+G++   G  +  ++ G I          +L +++E  + +I+ ++P+
Sbjct: 11  ILGIDPGTAVMGYGLIKETGSKISLINLGVIRLDHLDDHPLKLQRIFEKTSLLIEQYKPD 70

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+E  F  K+    LKLG+A+ +A+ +     +P+ EY+P  +K+A+ G G+  K+Q+
Sbjct: 71  CMALEAPFYGKNVQVMLKLGRAQGVAMAAGLAKNLPIMEYSPKKVKQAITGNGNAGKEQV 130

Query: 127 HMMLKMLM-----PESFFKGKDAADALAIAVCHAYH 157
             ML  L+     PE      DA D LA+AVCH++ 
Sbjct: 131 AAMLMQLLDFKETPEFL----DATDGLAVAVCHSFQ 162


>gi|149277091|ref|ZP_01883233.1| Holliday junction resolvase [Pedobacter sp. BAL39]
 gi|149231968|gb|EDM37345.1| Holliday junction resolvase [Pedobacter sp. BAL39]
          Length = 187

 Score = 94.4 bits (233), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 55/162 (33%), Positives = 91/162 (56%), Gaps = 11/162 (6%)

Query: 2   RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           +K   I+GIDPG    G+G++   G  +  V+ G +          +L +++E    +I 
Sbjct: 5   KKERVIMGIDPGTSIMGYGVILERGSKIELVTMGIVRMDHMDDHFLKLQRIFEKTVVLID 64

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALAR-IPVSEYAPNTIKKAVIGVGH 120
            ++P+  A+E  F  K+    LKLG+A+ +A ++ AL+R IP++EYAP  IK+++ G G 
Sbjct: 65  EFKPDTMALEAPFYGKNIQVMLKLGRAQGVA-MAAALSRNIPITEYAPRKIKQSITGNGS 123

Query: 121 GDKKQIHMMLKMLM-----PESFFKGKDAADALAIAVCHAYH 157
             K+Q+  ML+ L+     PE      DA D LA+AVCH++ 
Sbjct: 124 SGKEQVAAMLQRLLNFKETPEFL----DATDGLAVAVCHSFQ 161


>gi|269837238|ref|YP_003319466.1| crossover junction endodeoxyribonuclease RuvC [Sphaerobacter
           thermophilus DSM 20745]
 gi|269786501|gb|ACZ38644.1| crossover junction endodeoxyribonuclease RuvC [Sphaerobacter
           thermophilus DSM 20745]
          Length = 168

 Score = 94.0 bits (232), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 44/128 (34%), Positives = 77/128 (60%), Gaps = 1/128 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+G+DPG    G+G+V V  D    +  G + +   + +  RL +LYEGL+ +++   P+
Sbjct: 8   ILGVDPGTALLGYGLV-VGNDEPLALEYGVLSTPSSERMPARLLKLYEGLSTLLRRHAPD 66

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
              +E++F +++    L +GQAR + +L+ A A +PV EY P  +K+AV G G  DK Q+
Sbjct: 67  VVVIEELFFSRNVTTALSVGQARGVVLLAAAQAGVPVVEYKPAEVKQAVAGYGKADKAQM 126

Query: 127 HMMLKMLM 134
             M+++L+
Sbjct: 127 QEMVRILL 134


>gi|225011446|ref|ZP_03701884.1| crossover junction endodeoxyribonuclease RuvC [Flavobacteria
           bacterium MS024-2A]
 gi|225003949|gb|EEG41921.1| crossover junction endodeoxyribonuclease RuvC [Flavobacteria
           bacterium MS024-2A]
          Length = 184

 Score = 94.0 bits (232), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 90/161 (55%), Gaps = 1/161 (0%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M+    I+GIDPG    G+G++    +++  +    +      +   +L  +++   ++I
Sbjct: 1   MQNEQIILGIDPGTTIMGFGLIKTTKNSMELIQMHELHLKKYDNHFMKLGIIFKRTIELI 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
           + + P+E A+E  F  K+  + LKLG+A+ +A+ +     IP++EY+P  IK A+ G G+
Sbjct: 61  EEYHPDELAIEAPFFGKNVQSMLKLGRAQGVAMAAGLSREIPITEYSPKKIKMAITGNGN 120

Query: 121 GDKKQIHMMLKMLMP-ESFFKGKDAADALAIAVCHAYHANS 160
             K+Q+  ML+ L+  ++  K  DA D LA AVCH Y+  +
Sbjct: 121 ASKEQVAKMLQSLLKIKTLPKNLDATDGLAAAVCHYYNQGT 161


>gi|325856898|ref|ZP_08172396.1| crossover junction endodeoxyribonuclease RuvC [Prevotella denticola
           CRIS 18C-A]
 gi|327314586|ref|YP_004330023.1| crossover junction endodeoxyribonuclease RuvC [Prevotella denticola
           F0289]
 gi|325483271|gb|EGC86248.1| crossover junction endodeoxyribonuclease RuvC [Prevotella denticola
           CRIS 18C-A]
 gi|326944457|gb|AEA20342.1| crossover junction endodeoxyribonuclease RuvC [Prevotella denticola
           F0289]
          Length = 191

 Score = 94.0 bits (232), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 52/156 (33%), Positives = 84/156 (53%), Gaps = 3/156 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           ++GIDPG    G+G++ V G+    +  G I     + +  RL ++++ +T +I  + P+
Sbjct: 12  LLGIDPGTNVMGYGVLRVRGNKAELIVMGVIDMRKEKDVYLRLGKIFDRVTGIIDEYLPD 71

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E  F  K+  + LKLG+A+ +AI +     +P+ EYAP  IK A+ G G   K Q+
Sbjct: 72  ELAIEAPFFGKNVQSMLKLGRAQGVAIAAAIHHDVPICEYAPLKIKMAITGNGSASKDQV 131

Query: 127 HMMLKMLM---PESFFKGKDAADALAIAVCHAYHAN 159
             ML+ L+    +      DA DA+A A CH    N
Sbjct: 132 AGMLQKLLHLRDDQMPHFMDATDAVAAAYCHFLQMN 167


>gi|56460195|ref|YP_155476.1| Holliday junction resolvase [Idiomarina loihiensis L2TR]
 gi|81600179|sp|Q5QYV0|RUVC_IDILO RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|56179205|gb|AAV81927.1| Holliday junction resolvasome, endonuclease subunit [Idiomarina
           loihiensis L2TR]
          Length = 178

 Score = 94.0 bits (232), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 65/164 (39%), Positives = 109/164 (66%), Gaps = 5/164 (3%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTI--VSCVRQ--SLAFRLCQLYEGLTDVIKN 62
           I+GIDPG R TG+G+++  G  L ++ SG I  +   ++  +LA +L ++++ ++++I  
Sbjct: 4   ILGIDPGSRLTGYGVIEQRGRQLNYLGSGCIKVIGTTKEPLTLAEKLRRIHDSVSELITQ 63

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
           ++P E A+EQVF+ K+  + LKLGQAR  AI++ A A +PV+EY+   IK++V+G G  +
Sbjct: 64  FKPNEFAIEQVFMAKNPDSALKLGQARGAAIVAAACAELPVAEYSARQIKQSVVGNGGAE 123

Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
           K Q+  M+  L+       +DAADALA+A+CHA H++    K+A
Sbjct: 124 KSQVQHMVMALLNLQRCPQEDAADALAVALCHA-HSSQNLIKMA 166


>gi|86157378|ref|YP_464163.1| crossover junction endodeoxyribonuclease RuvC [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|123764248|sp|Q2IPJ7|RUVC_ANADE RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|85773889|gb|ABC80726.1| crossover junction endodeoxyribonuclease RuvC [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 185

 Score = 94.0 bits (232), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 64/148 (43%), Positives = 86/148 (58%), Gaps = 2/148 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           ++GIDPG RR G+G+V   G  L  V SG +V      +A RL ++ +GL  +I   RP 
Sbjct: 3   VLGIDPGSRRCGYGVVAREGARLTVVESGVLVPG-DLPMAQRLGRILDGLDALIARARPA 61

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           EA+VE VF      + L LGQAR +A+ + A A +PV EYAP+ +K A  G G   K Q+
Sbjct: 62  EASVEAVFSGASPRSALVLGQARGVALAAAARAGLPVFEYAPSEVKLAFTGNGRAGKDQM 121

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCH 154
               +ML+  +     D ADALAIAVCH
Sbjct: 122 LRTARMLLGAAPGL-SDEADALAIAVCH 148


>gi|239907720|ref|YP_002954461.1| crossover junction endodeoxyribonuclease RuvC [Desulfovibrio
           magneticus RS-1]
 gi|259495684|sp|C4XIK0|RUVC_DESMR RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|239797586|dbj|BAH76575.1| crossover junction endodeoxyribonuclease RuvC [Desulfovibrio
           magneticus RS-1]
          Length = 169

 Score = 94.0 bits (232), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 57/150 (38%), Positives = 88/150 (58%), Gaps = 4/150 (2%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+G+DPG R TG+G+V      L  V +G + +  +     RL  ++  + ++I+   P 
Sbjct: 9   ILGLDPGSRATGYGLVRERSGVLELVDAGVVRTTSQPDFPSRLGVIFTAVAELIQRHGPA 68

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E +VE VFV+K+A   LKLGQAR  A+ + A+A + V  Y P  IK++++G G  +K Q+
Sbjct: 69  EVSVENVFVSKNAATALKLGQARGAALAACAVAGLSVHSYEPTVIKQSLVGTGRAEKSQV 128

Query: 127 HMMLKMLMP--ESFFKGKDAADALAIAVCH 154
             M+  ++   E+F    DA DALA AVCH
Sbjct: 129 AFMVARVLACRETF--AVDATDALAAAVCH 156


>gi|325286716|ref|YP_004262506.1| Crossover junction endodeoxyribonuclease ruvC [Cellulophaga lytica
           DSM 7489]
 gi|324322170|gb|ADY29635.1| Crossover junction endodeoxyribonuclease ruvC [Cellulophaga lytica
           DSM 7489]
          Length = 184

 Score = 94.0 bits (232), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 55/162 (33%), Positives = 88/162 (54%), Gaps = 3/162 (1%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M K   I+G+DPG    G+G++ V G  + F+    ++         +L  ++E   ++I
Sbjct: 1   MAKERIILGVDPGTTIMGFGLIKVVGKKMEFLQMNELLLQKYNDPYTKLKLIFERTIELI 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             + P+E A+E  F  K+  + LKLG+A+ +A+ +    ++ ++EY P  IK A+ G G+
Sbjct: 61  DTYHPDEMALEAPFYGKNVQSMLKLGRAQGVAMAAGLSRQLVITEYMPKKIKMAITGNGN 120

Query: 121 GDKKQIHMMLK-MLMPESFFKGKDAADALAIAVCHAYHANSG 161
             K+Q+  MLK  L  +   K  DA D LA AVCH Y  NSG
Sbjct: 121 ASKEQVAGMLKSTLGLKELPKNLDATDGLAAAVCHFY--NSG 160


>gi|256831251|ref|YP_003159979.1| crossover junction endodeoxyribonuclease RuvC [Desulfomicrobium
           baculatum DSM 4028]
 gi|256580427|gb|ACU91563.1| crossover junction endodeoxyribonuclease RuvC [Desulfomicrobium
           baculatum DSM 4028]
          Length = 173

 Score = 94.0 bits (232), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 50/152 (32%), Positives = 85/152 (55%), Gaps = 1/152 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+G+DPG R  G+G+V      L  V +G +V    ++++ RL  +Y  +++++    P 
Sbjct: 7   ILGVDPGSRCMGYGLVRERSGVLSLVEAG-VVRPGEEAMSARLGLMYTRISELLHAHSPH 65

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             AVE VF  +++ + LKLGQAR   + +  +    V  Y P  +KK+++G G  +K Q+
Sbjct: 66  AVAVENVFFARNSASALKLGQARGAVLAACGVHGAEVFGYEPTLVKKSLVGAGRAEKSQV 125

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHA 158
             M+  L+       +DA DALA+A+CH  H+
Sbjct: 126 SFMVGQLLGVKPDWAEDAGDALALAICHLNHS 157


>gi|254526917|ref|ZP_05138969.1| crossover junction endodeoxyribonuclease RuvC [Prochlorococcus
           marinus str. MIT 9202]
 gi|221538341|gb|EEE40794.1| crossover junction endodeoxyribonuclease RuvC [Prochlorococcus
           marinus str. MIT 9202]
          Length = 157

 Score = 94.0 bits (232), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 53/150 (35%), Positives = 87/150 (58%), Gaps = 2/150 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RIIGIDPGL R G+GI+++  +    +  G I +   +    RL ++++ L ++I +W 
Sbjct: 1   MRIIGIDPGLARVGYGIIEIENEKKILLDCGVIETGKDKKEEDRLYEIFKDLNELINHWN 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P  AAVE+ F  + +  T+ + QAR + ++  A  +I VSEY+P  IK  + G G   KK
Sbjct: 61  PTSAAVEKFFFYRSS-TTISVVQARGVIMMVLASKKIHVSEYSPAQIKLTIAGSGKASKK 119

Query: 125 QI-HMMLKMLMPESFFKGKDAADALAIAVC 153
           ++   ++  L  +   K  D+ADALAIA+ 
Sbjct: 120 EVLDAVMYSLELKKPPKPDDSADALAIALT 149


>gi|289450708|ref|YP_003475228.1| crossover junction endodeoxyribonuclease RuvC [Clostridiales
           genomosp. BVAB3 str. UPII9-5]
 gi|289185255|gb|ADC91680.1| crossover junction endodeoxyribonuclease RuvC [Clostridiales
           genomosp. BVAB3 str. UPII9-5]
          Length = 167

 Score = 94.0 bits (232), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 43/128 (33%), Positives = 76/128 (59%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+G+DPG   TG+GI++   + L  +  G + +  R  +  RL +++ GL  +++ + P 
Sbjct: 3   IMGVDPGYAITGYGILETKNNRLNPLDFGVLTTPARMPIERRLYKIHTGLIAIMREYNPA 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             AVE++F  ++    +   +AR IA+L+ A  +IPV EY P  +K AV G G  +K+Q+
Sbjct: 63  VLAVEELFFARNTTTAIGTAEARGIALLAAAQYKIPVFEYTPLQVKLAVTGYGKSEKRQV 122

Query: 127 HMMLKMLM 134
             M+K+L+
Sbjct: 123 QSMVKLLL 130


>gi|212693428|ref|ZP_03301556.1| hypothetical protein BACDOR_02944 [Bacteroides dorei DSM 17855]
 gi|237710485|ref|ZP_04540966.1| holliday junction resolvase [Bacteroides sp. 9_1_42FAA]
 gi|237726992|ref|ZP_04557473.1| holliday junction resolvase [Bacteroides sp. D4]
 gi|254884538|ref|ZP_05257248.1| holliday junction resolvase [Bacteroides sp. 4_3_47FAA]
 gi|265756503|ref|ZP_06090709.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides sp.
           3_1_33FAA]
 gi|294778646|ref|ZP_06744068.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides vulgatus
           PC510]
 gi|319640770|ref|ZP_07995483.1| crossover junction endodeoxyribonuclease ruvC [Bacteroides sp.
           3_1_40A]
 gi|212664072|gb|EEB24646.1| hypothetical protein BACDOR_02944 [Bacteroides dorei DSM 17855]
 gi|229433848|gb|EEO43925.1| holliday junction resolvase [Bacteroides dorei 5_1_36/D4]
 gi|229455207|gb|EEO60928.1| holliday junction resolvase [Bacteroides sp. 9_1_42FAA]
 gi|254837331|gb|EET17640.1| holliday junction resolvase [Bacteroides sp. 4_3_47FAA]
 gi|263233691|gb|EEZ19306.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides sp.
           3_1_33FAA]
 gi|294447595|gb|EFG16173.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides vulgatus
           PC510]
 gi|317387582|gb|EFV68448.1| crossover junction endodeoxyribonuclease ruvC [Bacteroides sp.
           3_1_40A]
          Length = 189

 Score = 93.6 bits (231), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 57/152 (37%), Positives = 88/152 (57%), Gaps = 5/152 (3%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG    G+G++ V G     ++ G I          +L +++E +  +I+ + P+
Sbjct: 10  ILGIDPGTTIMGYGLLKVVGTKPQVMTMGVIDLRKYGDHYLKLRRIFERVVGIIEAYLPD 69

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALAR-IPVSEYAPNTIKKAVIGVGHGDKKQ 125
           E A+E  F  K+  + LKLG+A+ +A ++ AL+R IP++EYAP  IK A+ G G   K+Q
Sbjct: 70  ELAIEAPFFGKNVQSMLKLGRAQGVA-MAAALSRDIPITEYAPLKIKMAITGNGQASKEQ 128

Query: 126 IHMMLKMLM--PES-FFKGKDAADALAIAVCH 154
           +  MLK ++  PES      DA D LA A CH
Sbjct: 129 VADMLKRMLHIPESDMLPFMDATDGLAAAYCH 160


>gi|288924951|ref|ZP_06418887.1| crossover junction endodeoxyribonuclease RuvC [Prevotella buccae
           D17]
 gi|315607984|ref|ZP_07882977.1| crossover junction endoribonuclease subunit C [Prevotella buccae
           ATCC 33574]
 gi|288338141|gb|EFC76491.1| crossover junction endodeoxyribonuclease RuvC [Prevotella buccae
           D17]
 gi|315250453|gb|EFU30449.1| crossover junction endoribonuclease subunit C [Prevotella buccae
           ATCC 33574]
          Length = 186

 Score = 93.6 bits (231), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 54/151 (35%), Positives = 82/151 (54%), Gaps = 3/151 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG    G+G++ V  +    V  G I     +    RL ++++ +T VI  + P+
Sbjct: 7   ILGIDPGTNVMGYGVLRVVDNKASLVVMGIIDMRKERDPYLRLGKIFDRVTGVIDEYLPD 66

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E  F  K+  + LKLG+A+ +AI +     IP+ EYAP  IK ++ G G   K+Q+
Sbjct: 67  EMAIEAPFFGKNVQSMLKLGRAQGVAIAAAIHHDIPIHEYAPLKIKLSITGQGKASKEQV 126

Query: 127 HMMLKMLMPES---FFKGKDAADALAIAVCH 154
             ML+ ++  S     K  DA DAL  A CH
Sbjct: 127 AEMLRRILNISDGDMPKFMDATDALGAAYCH 157


>gi|325297411|ref|YP_004257328.1| Crossover junction endodeoxyribonuclease ruvC [Bacteroides
           salanitronis DSM 18170]
 gi|324316964|gb|ADY34855.1| Crossover junction endodeoxyribonuclease ruvC [Bacteroides
           salanitronis DSM 18170]
          Length = 189

 Score = 93.6 bits (231), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 85/151 (56%), Gaps = 3/151 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG    G+G++ + G     ++ G I     +    +L  +Y+ +  VI ++ P+
Sbjct: 10  ILGIDPGTNIMGYGVLKITGIKPEVMTLGVIDLRKCEDPYLKLKHIYQRVQGVIASYLPD 69

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E  F  K+  + LKLG+A+ +AI++     IPV+EYAP  IK A+ G G   K+Q+
Sbjct: 70  ELAIEAPFYGKNVQSMLKLGRAQGVAIVAALCRDIPVTEYAPLKIKMAITGNGQASKEQV 129

Query: 127 HMMLKMLM--PESFFKG-KDAADALAIAVCH 154
             MLK ++  P+S      DA DAL  A CH
Sbjct: 130 ASMLKRMLHIPDSEMGPFMDATDALGAAYCH 160


>gi|222475638|ref|YP_002564055.1| holliday (crossover) junction endodeoxyribonuclease (ruvC)
           [Anaplasma marginale str. Florida]
 gi|254767456|sp|B9KH95|RUVC_ANAMF RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|222419776|gb|ACM49799.1| holliday (crossover) junction endodeoxyribonuclease (ruvC)
           [Anaplasma marginale str. Florida]
          Length = 165

 Score = 93.6 bits (231), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 88/155 (56%), Gaps = 3/155 (1%)

Query: 7   IIGIDPGLRRTGWGIVD-VAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           IIGIDPGL  TGWG+V      ++C + SG I +      + +L ++Y  L  V+  ++ 
Sbjct: 3   IIGIDPGLEFTGWGVVSSTNSQSVCLLDSGVISTRGISRESEKLYKIYVSLLSVLSLYKI 62

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
           +EA++E+VF+N +  +++ L  ARA + +S     I + EY+   IKK + G G   K+Q
Sbjct: 63  DEASIEKVFINSNPRSSMSLCYARAASTISVMSRGIDIYEYSSTAIKKCITGSGMAPKEQ 122

Query: 126 IHMMLK--MLMPESFFKGKDAADALAIAVCHAYHA 158
           +  M++  + + +       ++DA+A A+CH Y+ 
Sbjct: 123 VSFMVRSSLGIKQDVEINNHSSDAIAAALCHVYNT 157


>gi|94970645|ref|YP_592693.1| crossover junction endodeoxyribonuclease RuvC [Candidatus
           Koribacter versatilis Ellin345]
 gi|123256221|sp|Q1IKI1|RUVC_ACIBL RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|94552695|gb|ABF42619.1| crossover junction endodeoxyribonuclease RuvC [Candidatus
           Koribacter versatilis Ellin345]
          Length = 166

 Score = 93.6 bits (231), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 57/156 (36%), Positives = 89/156 (57%), Gaps = 6/156 (3%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDN---LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           +R++GID G   TG+GIV+   D+   L  + +G +    R  L  +L +++  L  VI+
Sbjct: 1   MRVMGIDCGSEYTGFGIVE--SDDRARLHCIVAGAVHLSARDPLENKLAKIFRELCSVIR 58

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
              PE  A+E VF   +A + LKLG  R +A+L+ A   + V+ YAP  +K AV+G G  
Sbjct: 59  EHDPEVVAIEDVFYAVNAKSALKLGHVRGVAMLAVAECGLRVATYAPLAVKSAVVGYGKA 118

Query: 122 DKKQIHMML-KMLMPESFFKGKDAADALAIAVCHAY 156
           +K Q+  M+ ++L      +  D ADALAIA+CH +
Sbjct: 119 EKCQVQAMVARLLNLPQVPEPADVADALAIAICHLH 154


>gi|255530314|ref|YP_003090686.1| crossover junction endodeoxyribonuclease RuvC [Pedobacter heparinus
           DSM 2366]
 gi|255343298|gb|ACU02624.1| crossover junction endodeoxyribonuclease RuvC [Pedobacter heparinus
           DSM 2366]
          Length = 187

 Score = 93.6 bits (231), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 87/161 (54%), Gaps = 9/161 (5%)

Query: 2   RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           +K   I+GIDPG    G+G++   G  +  ++ G +          +L +++E    +I 
Sbjct: 5   KKERVIMGIDPGTSIMGYGVILERGSKIELITMGIVRMDHLDDHFLKLQRIFEKTVRLID 64

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
            ++P+  A+E  F  K+    LKLG+A+ IA+ +     IP++EYAP  IK+++ G G  
Sbjct: 65  EYKPDILALEAPFYGKNIQVMLKLGRAQGIAMAAALSKNIPINEYAPRKIKQSITGNGSA 124

Query: 122 DKKQIHMMLKMLM-----PESFFKGKDAADALAIAVCHAYH 157
            K+Q+  ML+ L+     PE      DA D LA+AVCH++ 
Sbjct: 125 GKEQVAAMLQRLLNFKETPEFL----DATDGLAVAVCHSFQ 161


>gi|291544343|emb|CBL17452.1| crossover junction endodeoxyribonuclease RuvC [Ruminococcus sp.
           18P13]
          Length = 168

 Score = 93.6 bits (231), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 54/158 (34%), Positives = 92/158 (58%), Gaps = 2/158 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RIIGIDPG    G+G++D  G     +  G I++        RL  +YE +  +++ ++
Sbjct: 1   MRIIGIDPGYAIVGFGVLDYRGVEFTTLEYGAILTEAHTDFPQRLGNIYEDMCFILERFK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  A+EQ+F   +    + + QAR + +L+     +P++EY P+ +K+AV+G G  +K+
Sbjct: 61  PDALAIEQLFFYSNKTTGIDVAQARGVILLAAVQHGVPIAEYTPSQVKQAVVGYGKAEKR 120

Query: 125 QI-HMMLKMLMPESFFKGKDAADALAIAVCHAYHANSG 161
           Q+  M  ++L  E   K  DAADALA+A+CH  H + G
Sbjct: 121 QVMEMTRRILHLEQIPKPDDAADALALAICHG-HCSRG 157


>gi|189346019|ref|YP_001942548.1| crossover junction endodeoxyribonuclease RuvC [Chlorobium limicola
           DSM 245]
 gi|238692189|sp|B3EG36|RUVC_CHLL2 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|189340166|gb|ACD89569.1| crossover junction endodeoxyribonuclease RuvC [Chlorobium limicola
           DSM 245]
          Length = 190

 Score = 93.6 bits (231), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 54/148 (36%), Positives = 78/148 (52%), Gaps = 1/148 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           ++G+DPG   TG+G++         +  G I    R+S   R+ ++Y  L  VI  + P 
Sbjct: 3   VLGVDPGSLHTGYGVIRYDNAGFHLLGCGVIRLHRRKSYFERIGEIYRELDSVIGGYAPV 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+E VF+NK+  + LKLGQ R   I      R+ +SEYAP  +K AV G G   K+Q+
Sbjct: 63  RLALETVFLNKNVQSALKLGQVRGAVIALAMNHRLELSEYAPREVKAAVTGRGAASKEQV 122

Query: 127 HMML-KMLMPESFFKGKDAADALAIAVC 153
             M+ +ML         D  DALAIA+C
Sbjct: 123 AFMVTRMLKITGNPATHDVTDALAIALC 150


>gi|220916122|ref|YP_002491426.1| crossover junction endodeoxyribonuclease RuvC [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|254767455|sp|B8JF03|RUVC_ANAD2 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|219953976|gb|ACL64360.1| crossover junction endodeoxyribonuclease RuvC [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 185

 Score = 93.2 bits (230), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 64/148 (43%), Positives = 86/148 (58%), Gaps = 2/148 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           ++GIDPG RR G+G+V   G  L  V SG +V      +A RL ++ +GL  +I   RP 
Sbjct: 3   VLGIDPGSRRCGYGVVAREGARLTVVESGVLVPG-DLPMAQRLGRILDGLDALIARARPL 61

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           EA+VE VF      + L LGQAR +A+ + A A +PV EYAP+ +K A  G G   K Q+
Sbjct: 62  EASVESVFSGASPRSALVLGQARGVALAAAARAGLPVFEYAPSEVKLAFTGNGRAGKDQM 121

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCH 154
               +ML+  +     D ADALAIAVCH
Sbjct: 122 LRTARMLLGAAPGL-SDEADALAIAVCH 148


>gi|170723161|ref|YP_001750849.1| Holliday junction resolvase [Pseudomonas putida W619]
 gi|229558762|sp|B1JD72|RUVC_PSEPW RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|169761164|gb|ACA74480.1| crossover junction endodeoxyribonuclease RuvC [Pseudomonas putida
           W619]
          Length = 174

 Score = 93.2 bits (230), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/157 (37%), Positives = 96/157 (61%), Gaps = 7/157 (4%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQ---SLAFRLCQLYEGLTDVIKNW 63
           I+GIDPG R TG+G+V        +V+SG    C+R     L  RL  ++ G++++I   
Sbjct: 4   ILGIDPGSRITGYGVVRQTARGCEYVASG----CIRTGSGELHERLQIVFRGVSEIIAQH 59

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P    +E+VF+ ++  + LKLGQAR  AI++ A A + ++EY+   +K+AV G G  +K
Sbjct: 60  GPVTMGIERVFMARNPDSALKLGQARGAAIVAAAEAGLEIAEYSATQVKQAVAGTGGANK 119

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           +Q+ +M+  L+  +     DA+DALAIA+CHA+  +S
Sbjct: 120 EQVMLMVMHLLKLTQKPQIDASDALAIALCHAHTRSS 156


>gi|123968692|ref|YP_001009550.1| Holliday junction resolvase [Prochlorococcus marinus str. AS9601]
 gi|166233284|sp|A2BRN2|RUVC_PROMS RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|123198802|gb|ABM70443.1| Crossover junction endodeoxyribonuclease RuvC [Prochlorococcus
           marinus str. AS9601]
          Length = 157

 Score = 93.2 bits (230), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 54/150 (36%), Positives = 87/150 (58%), Gaps = 2/150 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RIIGIDPGL R G+GI+++  +    +  G I +   +    RL ++++ L ++I +W+
Sbjct: 1   MRIIGIDPGLARVGYGIIEIENERKILLDCGVIETGKDKKEEDRLYEIFQDLNELINHWK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P  AAVE+ F  + +  T+ + QAR + ++  A  +I VSEY+P  IK  + G G   KK
Sbjct: 61  PTVAAVEKFFFYRSS-TTISVVQARGVIMMVLASKKIHVSEYSPAKIKLTIAGSGKASKK 119

Query: 125 QI-HMMLKMLMPESFFKGKDAADALAIAVC 153
            I   ++  L  +   K  D+ADALAIA+ 
Sbjct: 120 DILDAVMYNLDLDKPPKPDDSADALAIALT 149


>gi|254524664|ref|ZP_05136719.1| crossover junction endodeoxyribonuclease RuvC [Stenotrophomonas sp.
           SKA14]
 gi|219722255|gb|EED40780.1| crossover junction endodeoxyribonuclease RuvC [Stenotrophomonas sp.
           SKA14]
          Length = 173

 Score = 93.2 bits (230), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/152 (40%), Positives = 92/152 (60%), Gaps = 1/152 (0%)

Query: 6   RIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           RI+GIDPG +RTG GI+DV A   +  V    +V         R+  L  GL D+ + ++
Sbjct: 3   RILGIDPGSQRTGVGIIDVDAAGRVSHVHHQPLVLLGADDFPQRMKLLVLGLADLCREYQ 62

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P E A+E+VF+ ++  + LKLGQAR  AI +  L  +PV EYA + IK AV+G G  +K+
Sbjct: 63  PNEVAIEKVFMARNPDSALKLGQARGAAISAVVLRDLPVHEYAASEIKLAVVGRGGAEKQ 122

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
           Q+  M+ +++        DAADALA+A+ HA+
Sbjct: 123 QVQHMVGLMLNLKTKLQADAADALAVAITHAH 154


>gi|56417274|ref|YP_154348.1| holliday (crossover) junction endodeoxyribonuclease [Anaplasma
           marginale str. St. Maries]
 gi|81599081|sp|Q5P9D7|RUVC_ANAMM RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|56388506|gb|AAV87093.1| holliday (crossover) junction endodeoxyribonuclease [Anaplasma
           marginale str. St. Maries]
          Length = 165

 Score = 93.2 bits (230), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 88/155 (56%), Gaps = 3/155 (1%)

Query: 7   IIGIDPGLRRTGWGIVD-VAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           IIGIDPGL  TGWG+V      ++C + SG I +      + +L ++Y  L  V+  ++ 
Sbjct: 3   IIGIDPGLEFTGWGVVSSTNSQSVCLLDSGVISTRGISRESEKLYKIYVSLLSVLSLYKI 62

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
           +EA++E+VF+N +  +++ L  ARA + +S     I + EY+   IKK + G G   K+Q
Sbjct: 63  DEASIEKVFINSNPRSSMSLCYARAASTISVMSRGIDIYEYSSTAIKKCITGNGMAPKEQ 122

Query: 126 IHMMLK--MLMPESFFKGKDAADALAIAVCHAYHA 158
           +  M++  + + +       ++DA+A A+CH Y+ 
Sbjct: 123 VSFMVRSSLGIKQDVEINNHSSDAIAAALCHVYNT 157


>gi|255003631|ref|ZP_05278595.1| holliday (crossover) junction endodeoxyribonuclease [Anaplasma
           marginale str. Puerto Rico]
 gi|255004758|ref|ZP_05279559.1| holliday (crossover) junction endodeoxyribonuclease [Anaplasma
           marginale str. Virginia]
          Length = 164

 Score = 93.2 bits (230), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 88/155 (56%), Gaps = 3/155 (1%)

Query: 7   IIGIDPGLRRTGWGIVD-VAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           IIGIDPGL  TGWG+V      ++C + SG I +      + +L ++Y  L  V+  ++ 
Sbjct: 2   IIGIDPGLEFTGWGVVSSTNSQSVCLLDSGVISTRGISRESEKLYKIYVSLLSVLSLYKI 61

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
           +EA++E+VF+N +  +++ L  ARA + +S     I + EY+   IKK + G G   K+Q
Sbjct: 62  DEASIEKVFINSNPRSSMSLCYARAASTISVMSRGIDIYEYSSTAIKKCITGNGMAPKEQ 121

Query: 126 IHMMLK--MLMPESFFKGKDAADALAIAVCHAYHA 158
           +  M++  + + +       ++DA+A A+CH Y+ 
Sbjct: 122 VSFMVRSSLGIKQDVEINNHSSDAIAAALCHVYNT 156


>gi|150024319|ref|YP_001295145.1| Holliday junction resolvase [Flavobacterium psychrophilum JIP02/86]
 gi|149770860|emb|CAL42325.1| Crossover junction endoribonuclease [Flavobacterium psychrophilum
           JIP02/86]
          Length = 184

 Score = 93.2 bits (230), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 51/156 (32%), Positives = 86/156 (55%), Gaps = 3/156 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG    G+G++ +    + F+    ++     +   +L  ++E   ++I    P+
Sbjct: 7   ILGIDPGTTIMGFGLIKIINKKMEFLQLNELILSKYDNHYQKLKVIFERTIELIDTHNPD 66

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E  F  K+  + LKLG+A+ +A+ +     IP++EY P  IK A+ G G+  K+Q+
Sbjct: 67  EIAIEAPFFGKNVQSMLKLGRAQGVAMAAGLSRDIPITEYEPKKIKMAITGNGNASKEQV 126

Query: 127 HMMLKMLMP-ESFFKGKDAADALAIAVCHAYHANSG 161
             ML+ L+  +   K  D+ D LA AVCH +  NSG
Sbjct: 127 AKMLQQLLGLKELPKNLDSTDGLAAAVCHFF--NSG 160


>gi|94676931|ref|YP_588763.1| crossover junction endodeoxyribonuclease RuvC [Baumannia
           cicadellinicola str. Hc (Homalodisca coagulata)]
 gi|123081487|sp|Q1LTF1|RUVC_BAUCH RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|94220081|gb|ABF14240.1| crossover junction endodeoxyribonuclease RuvC [Baumannia
           cicadellinicola str. Hc (Homalodisca coagulata)]
          Length = 173

 Score = 93.2 bits (230), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 60/153 (39%), Positives = 92/153 (60%), Gaps = 7/153 (4%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVR---QSLAFRLCQLYEGLTDVIKNW 63
           ++GIDPG R TG+G++   G  L +++SG    C+R        RL ++Y  +  VI  +
Sbjct: 4   VLGIDPGSRITGYGVICKQGKILSYLASG----CIRTKTNDFPNRLKRIYIDVNQVITQF 59

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +P   A+EQ+F+ K+  + LKL QAR++AI+      IPV EYA   +KK ++G+G  DK
Sbjct: 60  KPLVFAIEQLFIAKNMNSALKLSQARSVAIVVAMNNNIPVFEYAARQVKKTLVGIGSADK 119

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
            Q+  M++ ++  S     DAADALAIA+ H Y
Sbjct: 120 HQVKHMVRTILNLSNNPQTDAADALAIAITHCY 152


>gi|332298167|ref|YP_004440089.1| Crossover junction endodeoxyribonuclease ruvC [Treponema
           brennaborense DSM 12168]
 gi|332181270|gb|AEE16958.1| Crossover junction endodeoxyribonuclease ruvC [Treponema
           brennaborense DSM 12168]
          Length = 189

 Score = 93.2 bits (230), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 74/132 (56%)

Query: 3   KSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
           ++ R++GIDPGL  TG+G+V+  G+    V+ G I +        RL  +Y  L  V+  
Sbjct: 31  RTRRVLGIDPGLASTGYGVVESCGNRYRLVAYGVIETPASAPRGERLLAIYSRLCAVLDE 90

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
           W+P EA +E ++  K+  + + + +AR +A L  A   +P+ EY PNTIK +V G     
Sbjct: 91  WQPREAGMETLYFAKNVSSAMAVAEARGVATLCLAQHCVPLGEYTPNTIKLSVTGTASAG 150

Query: 123 KKQIHMMLKMLM 134
           KK +   +++L+
Sbjct: 151 KKLVQEYVRLLL 162


>gi|269958336|ref|YP_003328123.1| Holliday (crossover) junction endodeoxyribonuclease [Anaplasma
           centrale str. Israel]
 gi|269848165|gb|ACZ48809.1| Holliday (crossover) junction endodeoxyribonuclease [Anaplasma
           centrale str. Israel]
          Length = 162

 Score = 93.2 bits (230), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 87/158 (55%), Gaps = 11/158 (6%)

Query: 8   IGIDPGLRRTGWGIVD-VAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           IGIDPGL  TGWG+V  +   ++C + SG I +      + +L ++Y  L  V+  +R E
Sbjct: 4   IGIDPGLEFTGWGVVSSLDSHSICLLDSGVISTRGISKESEKLYKIYVSLLSVLGMYRIE 63

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           EA++E+VFVN +  +++ L  ARA + +S     I + EY+   IKK + G G   K Q+
Sbjct: 64  EASIEKVFVNSNPRSSMSLCYARAASTISVMSKGINIYEYSSTAIKKCITGNGMAPKDQV 123

Query: 127 HMMLKMLMPESFFKGKD------AADALAIAVCHAYHA 158
             M++     S   G D      ++DA+A A+CH Y+ 
Sbjct: 124 LFMVR----NSLGIGSDIKINNHSSDAIAAALCHIYNT 157


>gi|149375110|ref|ZP_01892882.1| Holliday junction resolvase [Marinobacter algicola DG893]
 gi|149360474|gb|EDM48926.1| Holliday junction resolvase [Marinobacter algicola DG893]
          Length = 172

 Score = 93.2 bits (230), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/156 (42%), Positives = 100/156 (64%), Gaps = 7/156 (4%)

Query: 8   IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVR---QSLAFRLCQLYEGLTDVIKNWR 64
           +G+DPG R TG+GIV   G  + ++ SG    C+R   + +A RL  ++  L  +I  +R
Sbjct: 1   MGVDPGSRITGYGIVRAEGRVIEYIDSG----CIRVGEKPMAERLQTIFHSLATLIGEYR 56

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           PEE A+EQVF+ ++  + LKLGQAR  AI++ A + + V EY+   +K+AV+G G  DK 
Sbjct: 57  PEEFAIEQVFMARNPDSALKLGQARGAAIVAAANSGLAVHEYSARQVKQAVVGKGGADKA 116

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           Q+  M+++L+  S     DAADALAIA+CHA+ + S
Sbjct: 117 QVQHMVQVLLALSRKPQADAADALAIALCHAHMSQS 152


>gi|295695625|ref|YP_003588863.1| crossover junction endodeoxyribonuclease RuvC [Bacillus tusciae DSM
           2912]
 gi|295411227|gb|ADG05719.1| crossover junction endodeoxyribonuclease RuvC [Bacillus tusciae DSM
           2912]
          Length = 179

 Score = 92.8 bits (229), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 45/130 (34%), Positives = 76/130 (58%), Gaps = 1/130 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPG+ R G+G+V   G+ L     G  V      +  RL ++YE + ++++N  
Sbjct: 1   MRVLGIDPGIGRMGYGLVRSQGNRLRTEDYGC-VETRPGPIGERLVRIYEKMQELLQNLN 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  AVEQ+F  ++      +GQAR + +L+   A + V+EY P  +K+AV G G  +K 
Sbjct: 60  PDVVAVEQLFFYRNVTTAFHVGQARGVVLLAARQAEVAVAEYTPMQVKQAVTGYGSAEKG 119

Query: 125 QIHMMLKMLM 134
           Q+  M+ ML+
Sbjct: 120 QVQRMVAMLL 129


>gi|194366899|ref|YP_002029509.1| Holliday junction resolvase [Stenotrophomonas maltophilia R551-3]
 gi|226698767|sp|B4ST35|RUVC_STRM5 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|194349703|gb|ACF52826.1| crossover junction endodeoxyribonuclease RuvC [Stenotrophomonas
           maltophilia R551-3]
          Length = 173

 Score = 92.8 bits (229), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/152 (40%), Positives = 92/152 (60%), Gaps = 1/152 (0%)

Query: 6   RIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           RI+GIDPG +RTG GI+DV A   +  V    +V         R+  L  GL D+ + + 
Sbjct: 3   RILGIDPGSQRTGVGIIDVDATGRVSHVHHQPLVLLGADDFPQRMKLLVLGLADLCREYE 62

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+E A+E+VF+ ++  + LKLGQAR  AI +  L  +PV EYA + IK AV+G G  +K+
Sbjct: 63  PQEVAIERVFMARNPDSALKLGQARGAAISAVVLRDLPVHEYAASEIKLAVVGRGGAEKQ 122

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
           Q+  M+ +++        DAADALA+A+ HA+
Sbjct: 123 QVQHMVGLMLNLKTKLQADAADALAVAITHAH 154


>gi|126696498|ref|YP_001091384.1| Holliday junction resolvase [Prochlorococcus marinus str. MIT 9301]
 gi|166233280|sp|A3PDF8|RUVC_PROM0 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|126543541|gb|ABO17783.1| Crossover junction endodeoxyribonuclease RuvC [Prochlorococcus
           marinus str. MIT 9301]
          Length = 157

 Score = 92.8 bits (229), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 54/150 (36%), Positives = 85/150 (56%), Gaps = 2/150 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RIIGIDPGL R G+GI+++  +    +  G I +   +    RL ++++ L ++I +W 
Sbjct: 1   MRIIGIDPGLARVGYGIIEIENERKILLDCGVIETGKDKKEEDRLYEIFQDLNELINHWN 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P  AAVE+ F  + +  T+ + QAR + ++  A  +I VSEY+P  IK  + G G   KK
Sbjct: 61  PTSAAVEKFFFYRSS-TTISVVQARGVIMMVLASKKINVSEYSPAQIKLTIAGSGKASKK 119

Query: 125 QI-HMMLKMLMPESFFKGKDAADALAIAVC 153
            I   ++  L      K  D+ADALAIA+ 
Sbjct: 120 DILDAVMYNLDLNKPPKPDDSADALAIALT 149


>gi|282892420|ref|ZP_06300770.1| hypothetical protein pah_c253o046 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281497822|gb|EFB40183.1| hypothetical protein pah_c253o046 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 164

 Score = 92.8 bits (229), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 53/157 (33%), Positives = 82/157 (52%), Gaps = 2/157 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++IIGIDPG   TG+GI    G N   +  G I       L+ R   +Y+ +  +++   
Sbjct: 1   MKIIGIDPGTNITGYGIASFDGFNFSAIDYGCIRPPSSLKLSDRYLIIYDSIAHLLEQHT 60

Query: 65  PEEAAVEQVFVNK-DAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            +   VE  F +K +  + +KLG AR   I++    +IPV EY+P  +K A +G GH  K
Sbjct: 61  VDALVVETQFASKANPQSGIKLGMARGAIIIAAKKRQIPVYEYSPTQVKLAAVGYGHASK 120

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAY-HAN 159
            Q+  M++     +     DAADALA+ +C+ Y H N
Sbjct: 121 HQVQAMIQSQFQLNQLPPPDAADALALTLCYMYSHKN 157


>gi|51892297|ref|YP_074988.1| Holliday junction endodeoxyribonuclease RuvC [Symbiobacterium
           thermophilum IAM 14863]
 gi|81610584|sp|Q67Q99|RUVC_SYMTH RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|51855986|dbj|BAD40144.1| Holliday junction endodeoxyribonuclease RuvC [Symbiobacterium
           thermophilum IAM 14863]
          Length = 166

 Score = 92.8 bits (229), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 48/131 (36%), Positives = 75/131 (57%), Gaps = 1/131 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAG-DNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +RI+GIDPG  R G+GIV+ AG      V  G + +        RL  LY GL D++   
Sbjct: 1   MRILGIDPGTARMGYGIVEDAGAGRERAVEYGCLETPPDMRPELRLQALYRGLADLMARH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RP+  AVE++F  ++    + +GQAR + +L+ A + +PV E+ P  +K AV G G  +K
Sbjct: 61  RPDALAVEELFFGRNVTTAIHVGQARGVVLLAAADSGVPVREFTPMQVKMAVTGYGRANK 120

Query: 124 KQIHMMLKMLM 134
            Q+  M++ L+
Sbjct: 121 AQVQRMVQALL 131


>gi|254516710|ref|ZP_05128769.1| crossover junction endodeoxyribonuclease RuvC [gamma
           proteobacterium NOR5-3]
 gi|219675133|gb|EED31500.1| crossover junction endodeoxyribonuclease RuvC [gamma
           proteobacterium NOR5-3]
          Length = 172

 Score = 92.8 bits (229), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/128 (38%), Positives = 80/128 (62%), Gaps = 1/128 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG ++TG+GI+        +++SG ++   + +L  RL  + E + ++++   P 
Sbjct: 4   ILGIDPGSQKTGFGIISTLNGKNSYITSG-VIRLPKGALPERLRIIAESVAELVELHGPT 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E +VEQVF+ K A A LKLGQAR  AI+   +  + V+EY+   IK++V+G G  DK Q+
Sbjct: 63  ELSVEQVFLAKSADAALKLGQARGAAIVPCVIRGMEVAEYSARQIKQSVVGTGAADKAQV 122

Query: 127 HMMLKMLM 134
             M+K L+
Sbjct: 123 QHMVKALL 130


>gi|29654858|ref|NP_820550.1| Holliday junction resolvase [Coxiella burnetii RSA 493]
 gi|161830597|ref|YP_001597404.1| Holliday junction resolvase [Coxiella burnetii RSA 331]
 gi|212212081|ref|YP_002303017.1| Holliday junction resolvase [Coxiella burnetii CbuG_Q212]
 gi|44888459|sp|Q83BE3|RUVC_COXBU RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|189046063|sp|A9N9A1|RUVC_COXBR RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|226698751|sp|B6IYU4|RUVC_COXB2 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|29542127|gb|AAO91064.1| crossover junction endodeoxyribonuclease [Coxiella burnetii RSA
           493]
 gi|161762464|gb|ABX78106.1| crossover junction endodeoxyribonuclease RuvC [Coxiella burnetii
           RSA 331]
 gi|212010491|gb|ACJ17872.1| crossover junction endodeoxyribonuclease [Coxiella burnetii
           CbuG_Q212]
          Length = 172

 Score = 92.8 bits (229), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/149 (44%), Positives = 89/149 (59%), Gaps = 1/149 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           IIGIDPG R TG+GI+   G     ++ G I      SL FRL Q+   L D+I   RP 
Sbjct: 8   IIGIDPGSRITGYGIIWSQGSKQGCIAFGQI-KTDNDSLNFRLHQIERELRDLILIHRPH 66

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           EAA+EQVF   +  + LKLGQAR  A+++ A   + V+EY+   IK+AV+G G   K Q+
Sbjct: 67  EAAIEQVFTFHNHQSALKLGQARGAALVATAACALSVAEYSARQIKQAVVGYGAATKAQV 126

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHA 155
             M+ +L+        DAADALAIA+CHA
Sbjct: 127 QHMVHLLLQLEKAPPADAADALAIALCHA 155


>gi|288800187|ref|ZP_06405646.1| crossover junction endodeoxyribonuclease RuvC [Prevotella sp. oral
           taxon 299 str. F0039]
 gi|288333435|gb|EFC71914.1| crossover junction endodeoxyribonuclease RuvC [Prevotella sp. oral
           taxon 299 str. F0039]
          Length = 192

 Score = 92.4 bits (228), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 52/151 (34%), Positives = 84/151 (55%), Gaps = 3/151 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG    G+G++ V  +    ++ G I          RL  +++ +  +I+ + P+
Sbjct: 12  ILGIDPGTNIMGYGVIKVVSNKAEMIAMGIIDMRKMTDPYLRLGNIFQRVKGIIEEYLPD 71

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E  F  K+  + LKLG+A+ +AI +     IP+ EYAP  IK A+ G G   K+Q+
Sbjct: 72  EMAIEAPFFGKNIQSMLKLGRAQGVAIAAAINHDIPIFEYAPLKIKMAITGQGQASKEQV 131

Query: 127 -HMMLKMLMPE--SFFKGKDAADALAIAVCH 154
             M+L++L  +  +  K  DA DAL +A CH
Sbjct: 132 ADMLLRLLKLDKGNLPKFMDATDALGVAYCH 162


>gi|257784698|ref|YP_003179915.1| crossover junction endodeoxyribonuclease RuvC [Atopobium parvulum
           DSM 20469]
 gi|257473205|gb|ACV51324.1| crossover junction endodeoxyribonuclease RuvC [Atopobium parvulum
           DSM 20469]
          Length = 167

 Score = 92.4 bits (228), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/150 (37%), Positives = 86/150 (57%), Gaps = 1/150 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPGL  TGWGIV+  G      + G I +   + +  RL ++Y  + DVI  + PE
Sbjct: 3   ILGIDPGLAHTGWGIVETRGSECRARAYGCITTTADEPIDMRLGRIYNQIIDVIDKFSPE 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             ++E ++  ++  + +    AR  AI++ + A + V EY P  IK+AV+G G  DK+Q+
Sbjct: 63  ALSIESIYFGQNVKSAIPTAHARGAAIVACSKAGLTVGEYTPMQIKQAVVGTGAADKQQV 122

Query: 127 HMMLKMLMPESFFKGKD-AADALAIAVCHA 155
             M++ ++        D AADALA AVCHA
Sbjct: 123 MYMVQNILCLDHQPHPDHAADALAAAVCHA 152


>gi|160902929|ref|YP_001568510.1| crossover junction endodeoxyribonuclease RuvC [Petrotoga mobilis
           SJ95]
 gi|189046071|sp|A9BIM4|RUVC_PETMO RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|160360573|gb|ABX32187.1| crossover junction endodeoxyribonuclease RuvC [Petrotoga mobilis
           SJ95]
          Length = 163

 Score = 92.4 bits (228), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 71/121 (58%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG  R G+G+++  G+    +  G I +     L  RL  + E L ++I+ ++P+
Sbjct: 3   ILGIDPGYGRIGYGVLEKKGNMFNLIDYGVIYTSKEDELPKRLLNIDEQLRNLIETYKPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E+AVE+++  K+    +++G+AR + +L      IP+ EY P  IK+AV G G  +K QI
Sbjct: 63  ESAVEKLYFFKNVATAIQVGEARGVILLCLEKENIPIYEYTPFQIKQAVTGYGRAEKGQI 122

Query: 127 H 127
            
Sbjct: 123 Q 123


>gi|320536681|ref|ZP_08036694.1| crossover junction endodeoxyribonuclease RuvC [Treponema phagedenis
           F0421]
 gi|320146472|gb|EFW38075.1| crossover junction endodeoxyribonuclease RuvC [Treponema phagedenis
           F0421]
          Length = 161

 Score = 92.4 bits (228), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 47/134 (35%), Positives = 79/134 (58%), Gaps = 1/134 (0%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           MR+ I I+GIDPGL   G+G+V  +G  L  ++ G I +    +   RL  +++ +  V+
Sbjct: 1   MREKI-IVGIDPGLASAGYGVVAQSGSRLRCLTYGVIQTKPENTQGERLAIIFDSIGGVL 59

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
           K + P+ A +E ++  K+    L + +AR + +L+ A  +IPV EYAPN IKK V G+  
Sbjct: 60  KEFTPDAAGIETLYFAKNVTNGLSVAEARGVILLAFAQWQIPVREYAPNAIKKTVTGIAQ 119

Query: 121 GDKKQIHMMLKMLM 134
            +K Q+   +K+L+
Sbjct: 120 ANKHQVQESVKILL 133


>gi|297588496|ref|ZP_06947139.1| crossover junction endoribonuclease subunit C [Finegoldia magna
           ATCC 53516]
 gi|297573869|gb|EFH92590.1| crossover junction endoribonuclease subunit C [Finegoldia magna
           ATCC 53516]
          Length = 164

 Score = 92.4 bits (228), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 74/130 (56%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPG+   G+ I+D   + +  +  G I +  +  L  RL  +Y  +  +I  ++
Sbjct: 1   MRVLGIDPGIAIVGYSILDYDNNKIKCLEYGCITTSSKSPLPDRLSFIYNEMNKIIDEFQ 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           PE+ A E++F NK+    + + QAR + ILS     + + EY P  IK+AV+G G  DK+
Sbjct: 61  PEDCAFEELFFNKNVKTAITVSQARGVEILSCINKNLNLYEYTPLQIKQAVVGYGRADKR 120

Query: 125 QIHMMLKMLM 134
           Q+   +K ++
Sbjct: 121 QVQETVKTIL 130


>gi|160934124|ref|ZP_02081511.1| hypothetical protein CLOLEP_02987 [Clostridium leptum DSM 753]
 gi|156866797|gb|EDO60169.1| hypothetical protein CLOLEP_02987 [Clostridium leptum DSM 753]
          Length = 170

 Score = 92.4 bits (228), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 84/157 (53%), Gaps = 1/157 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG    G+G +         +  G I +      + RL  +Y+ + ++I+  RP+
Sbjct: 3   ILGIDPGYAIVGYGALRFERGQYRAIGFGAITTEAGMDFSARLQYIYDNMMEMIRQCRPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+E+++ + +    + + +AR I +L+   + +P+ EY P  +K AV G G   K Q+
Sbjct: 63  AVAIEKLYFHTNQKTVIHVAEARGIILLAAQKSGVPIFEYTPLQVKTAVTGYGRAHKPQV 122

Query: 127 -HMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGY 162
             M  ++L  +   K  D ADALA+A+CHA+ + S +
Sbjct: 123 MEMTTRLLKLKEVPKPDDTADALAVAICHAHASGSRF 159


>gi|88607636|ref|YP_504655.1| crossover junction endodeoxyribonuclease RuvC [Anaplasma
           phagocytophilum HZ]
 gi|123763836|sp|Q2GLU6|RUVC_ANAPZ RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|88598699|gb|ABD44169.1| crossover junction endodeoxyribonuclease RuvC [Anaplasma
           phagocytophilum HZ]
          Length = 163

 Score = 92.4 bits (228), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 89/159 (55%), Gaps = 3/159 (1%)

Query: 7   IIGIDPGLRRTGWGIV-DVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           + G+DPGL  TGW +V      +L  + +GTI +     L  +L  ++ GL+ +I+ +  
Sbjct: 3   VFGLDPGLNYTGWAVVLKEPSGSLSLLDTGTICTTSCSDLNDKLFCIFSGLSAIIQKFSV 62

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
             A++E VFVN +  A++ L  ARA ++L+   + + + EY+P  IKK V G G   K+Q
Sbjct: 63  SVASIENVFVNLNPKASMFLCYARAASLLACLSSNVKIFEYSPTKIKKCVFGNGRASKEQ 122

Query: 126 IHMMLK--MLMPESFFKGKDAADALAIAVCHAYHANSGY 162
           I  +++  + + E       A+DA+A A+CH + + + Y
Sbjct: 123 IAFVVRSSLGLSEDASFSSHASDAIAAALCHIFSSGNRY 161


>gi|302380677|ref|ZP_07269142.1| crossover junction endodeoxyribonuclease RuvC [Finegoldia magna
           ACS-171-V-Col3]
 gi|302311620|gb|EFK93636.1| crossover junction endodeoxyribonuclease RuvC [Finegoldia magna
           ACS-171-V-Col3]
          Length = 164

 Score = 92.4 bits (228), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 76/130 (58%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPG+   G+ I+D   + +  +  G I +  + +L  RL  +Y+ +  +I  ++
Sbjct: 1   MRVLGIDPGIAIVGYSILDYDNNKIKCLEYGCITTSSKSALPDRLSFIYQEMNKIIDEFQ 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P++ A E++F NK+    + + QAR + ILS     + + EY P  IK+AV+G G  DK+
Sbjct: 61  PDDCAFEELFFNKNVKTAITVSQARGVEILSCINKDLSLYEYTPLQIKQAVVGYGRADKR 120

Query: 125 QIHMMLKMLM 134
           Q+   +K ++
Sbjct: 121 QVQETVKTIL 130


>gi|307298438|ref|ZP_07578241.1| crossover junction endodeoxyribonuclease RuvC [Thermotogales
           bacterium mesG1.Ag.4.2]
 gi|306915603|gb|EFN45987.1| crossover junction endodeoxyribonuclease RuvC [Thermotogales
           bacterium mesG1.Ag.4.2]
          Length = 168

 Score = 92.0 bits (227), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 83/140 (59%), Gaps = 5/140 (3%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M   +R++GIDPG    G+G+V++    +  VS G I +  ++ +  RL ++++ L +++
Sbjct: 1   MPACVRVLGIDPGFGAVGYGVVEMRSSRIDLVSYGAIRTEPQEPIPDRLLKIHDRLEELL 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             +RP+E+AVE++F  ++    +++ +AR + +L+     +P+ EY P+ +K AV G G 
Sbjct: 61  LEFRPDESAVEELFFFRNVTTAIQVSEARGVILLAMRRHEVPIFEYTPHQVKLAVTGYGR 120

Query: 121 GDKKQIHMMLKMLMPESFFK 140
            +K Q+   LK     +FF+
Sbjct: 121 AEKGQVQRTLK-----TFFR 135


>gi|303233816|ref|ZP_07320470.1| crossover junction endodeoxyribonuclease RuvC [Finegoldia magna
           BVS033A4]
 gi|302495250|gb|EFL55002.1| crossover junction endodeoxyribonuclease RuvC [Finegoldia magna
           BVS033A4]
          Length = 164

 Score = 92.0 bits (227), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 76/130 (58%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPG+   G+ I+D   + +  +  G I +  + +L  RL  +Y+ +  +I  ++
Sbjct: 1   MRVLGIDPGIAIVGYSILDYDNNKINCLEYGCITTSSKSALPDRLSFIYQEMNKIIDEFQ 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P++ A E++F NK+    + + QAR + ILS     + + EY P  IK+AV+G G  DK+
Sbjct: 61  PDDCAFEELFFNKNVKTAITVSQARGVEILSCINKDLRLYEYTPLQIKQAVVGYGRADKR 120

Query: 125 QIHMMLKMLM 134
           Q+   +K ++
Sbjct: 121 QVQETVKTIL 130


>gi|282879013|ref|ZP_06287775.1| crossover junction endodeoxyribonuclease RuvC [Prevotella buccalis
           ATCC 35310]
 gi|281298848|gb|EFA91255.1| crossover junction endodeoxyribonuclease RuvC [Prevotella buccalis
           ATCC 35310]
          Length = 197

 Score = 91.7 bits (226), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 53/155 (34%), Positives = 79/155 (50%), Gaps = 11/155 (7%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG    G+G++ +       V+ G I          RL  +++ +T +I  + P+
Sbjct: 14  ILGIDPGTNVMGYGVIKILERKPSMVAMGVIDMRKTDDPYLRLGHIFDRITGIIDEYLPD 73

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E  F  K+  + LKLG+A+ +AI +     +P+ EYAP  IK A+ G G   K+Q+
Sbjct: 74  EMAIEAPFFGKNVQSMLKLGRAQGVAIAAAIHHDVPIHEYAPLKIKMAITGQGQASKEQV 133

Query: 127 HMMLKML-------MPESFFKGKDAADALAIAVCH 154
             ML+ L       MP       DA DAL  A CH
Sbjct: 134 AGMLQRLLKINQSEMPHFM----DATDALGAAYCH 164


>gi|258593139|emb|CBE69450.1| Crossover junction endodeoxyribonuclease ruvC (Holliday junction
           nuclease ruvC) [NC10 bacterium 'Dutch sediment']
          Length = 166

 Score = 91.7 bits (226), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 49/128 (38%), Positives = 75/128 (58%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           ++G+DPG   TG+G+V  +   L  V  G+I++  R     RL Q+Y  L ++I+  +PE
Sbjct: 3   VLGVDPGAGATGYGMVARSDGALRAVEYGSIITTPRDPFPARLQQIYSRLAELIRCHQPE 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
            AA+E +   K+  +  KLGQAR +AIL  A   + V+EY+P  IK AV G G   K Q+
Sbjct: 63  WAAIESLIFAKNVQSAFKLGQARGVAILVAAQNGLTVAEYSPLQIKSAVTGYGAAGKFQV 122

Query: 127 HMMLKMLM 134
             M++ L+
Sbjct: 123 QQMVQSLL 130


>gi|322435997|ref|YP_004218209.1| crossover junction endodeoxyribonuclease RuvC [Acidobacterium sp.
           MP5ACTX9]
 gi|321163724|gb|ADW69429.1| crossover junction endodeoxyribonuclease RuvC [Acidobacterium sp.
           MP5ACTX9]
          Length = 172

 Score = 91.7 bits (226), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 62/161 (38%), Positives = 97/161 (60%), Gaps = 5/161 (3%)

Query: 5   IRIIGIDPGLRRTGWGIVDV----AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           +R+ GID G   TG+G+V++        L   ++GTI    +++   RL +++  LT  I
Sbjct: 1   MRVFGIDCGTEFTGYGVVEMDARARNSRLVHCAAGTIRLNKKEATPTRLVKIFGELTAQI 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
               P+  A+E+VF + +A + LKLGQ R +A+L+ A    PV EYAP +IK AV+G G 
Sbjct: 61  TLHEPDVVAIEEVFFSANAKSALKLGQVRGVAMLAAATCGKPVVEYAPLSIKSAVVGYGL 120

Query: 121 GDKKQIH-MMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
             K+Q+  M++++L  E+     DAADALAIA+CH + A +
Sbjct: 121 AAKEQVQFMVMRLLALETAPDSADAADALAIAICHLHTAQT 161


>gi|154250387|ref|YP_001411212.1| crossover junction endodeoxyribonuclease RuvC [Fervidobacterium
           nodosum Rt17-B1]
 gi|171769405|sp|A7HNS2|RUVC_FERNB RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|154154323|gb|ABS61555.1| crossover junction endodeoxyribonuclease RuvC [Fervidobacterium
           nodosum Rt17-B1]
          Length = 166

 Score = 91.7 bits (226), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 76/130 (58%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPG    G+G+V+  G+ + +VS G I +   +    RL  +Y  + ++I+ + 
Sbjct: 1   MRILGIDPGYGIVGYGVVEKLGNKIAYVSHGAIKTEKGEHFEDRLDYIYNQVNEIIEKYN 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           PE  A+E ++  K+    + +G+AR + +L+   + IP  E+ P+ +K  V G G  +K 
Sbjct: 61  PELVAIESLYFYKNVKTAIYVGEARGVILLAIKHSNIPFVEFTPHQVKLTVTGYGRAEKT 120

Query: 125 QIHMMLKMLM 134
           QI  ++K+L+
Sbjct: 121 QIQKVMKILL 130


>gi|169824514|ref|YP_001692125.1| crossover junction endodeoxyribonuclease [Finegoldia magna ATCC
           29328]
 gi|238687749|sp|B0S1J5|RUVC_FINM2 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|167831319|dbj|BAG08235.1| crossover junction endodeoxyribonuclease [Finegoldia magna ATCC
           29328]
          Length = 164

 Score = 91.7 bits (226), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 76/130 (58%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPG+   G+ I+D   + +  +  G I +  + +L  RL  +Y+ +  +I  ++
Sbjct: 1   MRVLGIDPGIAIVGYSILDYDNNKIKCLEYGCITTSSKSALPDRLSFIYQEMNKIIDEFQ 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P++ A E++F NK+    + + QAR + ILS     + + EY P  IK+AV+G G  DK+
Sbjct: 61  PDDCAFEELFFNKNVKTAITVSQARGVEILSCINKDLRLYEYTPLQIKQAVVGYGRADKR 120

Query: 125 QIHMMLKMLM 134
           Q+   +K ++
Sbjct: 121 QVQETVKTIL 130


>gi|317057208|ref|YP_004105675.1| crossover junction endodeoxyribonuclease RuvC [Ruminococcus albus
           7]
 gi|315449477|gb|ADU23041.1| crossover junction endodeoxyribonuclease RuvC [Ruminococcus albus
           7]
          Length = 169

 Score = 91.7 bits (226), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 73/130 (56%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPG    G+G V+        + +GTI +        RL  +Y  +  +I  +R
Sbjct: 1   MRIMGIDPGYGIVGYGFVEYDRGRFTPIKAGTIKTPSDMDFMKRLRVIYLDMQKLIGYYR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+E AVE++F N +    + + QAR + +L   +  +PV EY P  +K +++G G+ +KK
Sbjct: 61  PDEVAVEKLFFNTNITTGIDVAQARGVTLLPAVMNELPVYEYTPLQVKSSIVGYGYAEKK 120

Query: 125 QIHMMLKMLM 134
           Q+  M++ ++
Sbjct: 121 QVQEMVRSML 130


>gi|262165956|ref|ZP_06033693.1| crossover junction endodeoxyribonuclease RuvC [Vibrio mimicus
           VM223]
 gi|262025672|gb|EEY44340.1| crossover junction endodeoxyribonuclease RuvC [Vibrio mimicus
           VM223]
          Length = 122

 Score = 91.3 bits (225), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 44/100 (44%), Positives = 67/100 (67%)

Query: 56  LTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAV 115
           ++++I  ++P+  A+EQVF+ K+A + LKLGQAR  AI++   A +PV EYA   IK+AV
Sbjct: 1   MSEIITQFQPDAFAIEQVFMAKNADSALKLGQARGSAIVAAVNANLPVYEYAARLIKQAV 60

Query: 116 IGVGHGDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHA 155
           +G G  DK Q+  M++ ++        DAADAL +A+CHA
Sbjct: 61  VGTGAADKSQVQHMVQQMLKLPGKPQADAADALGVAICHA 100


>gi|320107653|ref|YP_004183243.1| crossover junction endodeoxyribonuclease RuvC [Terriglobus
           saanensis SP1PR4]
 gi|319926174|gb|ADV83249.1| crossover junction endodeoxyribonuclease RuvC [Terriglobus
           saanensis SP1PR4]
          Length = 168

 Score = 91.3 bits (225), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 51/134 (38%), Positives = 76/134 (56%), Gaps = 4/134 (2%)

Query: 5   IRIIGIDPGLRRTGWGIVDV----AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           +R+ GID G   TGWG+V+V        L  +++G I    +     RL Q+Y  LT +I
Sbjct: 1   MRVFGIDCGTEYTGWGVVEVDDSGKRQRLVPIAAGAIKLHKKHKTPERLQQVYVELTGLI 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             + PE  A+E VF   +A + LKLG  R +A+L+ A   + V+EYAP +IK AV+G G 
Sbjct: 61  TAYEPEVVAIEDVFFAANAKSALKLGHVRGVAMLAAASCGLQVAEYAPLSIKSAVVGYGL 120

Query: 121 GDKKQIHMMLKMLM 134
             K+Q+  M+  L+
Sbjct: 121 AAKEQVQFMVARLL 134


>gi|237736750|ref|ZP_04567231.1| crossover junction endodeoxyribonuclease ruvC [Fusobacterium
           mortiferum ATCC 9817]
 gi|229420612|gb|EEO35659.1| crossover junction endodeoxyribonuclease ruvC [Fusobacterium
           mortiferum ATCC 9817]
          Length = 192

 Score = 91.3 bits (225), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 73/130 (56%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPG    G+ I+D   +    +  G I +     +  RLC++Y  LT++IK + 
Sbjct: 1   MRVLGIDPGTAIVGFSILDFENNRFNVIDYGCIYTDKDMPMEDRLCKIYSELTEIIKKYS 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P E A+E++F  K+    + +GQAR + +L      + ++ Y P  +K  + G G  +KK
Sbjct: 61  PSEMAIEELFYFKNNKTVISVGQARGVIVLCGRQNNLVINHYTPLQVKTGITGYGKAEKK 120

Query: 125 QIHMMLKMLM 134
           QI +M++ ++
Sbjct: 121 QIQLMVQRIL 130


>gi|298207569|ref|YP_003715748.1| Holliday junction resolvase [Croceibacter atlanticus HTCC2559]
 gi|83850205|gb|EAP88073.1| Holliday junction resolvase [Croceibacter atlanticus HTCC2559]
          Length = 184

 Score = 91.3 bits (225), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 85/159 (53%), Gaps = 1/159 (0%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M K   I+GIDPG    G+G++ V    +  +    +          +L  ++E   ++I
Sbjct: 1   MSKERIILGIDPGTTIMGFGVIKVVNKKMECLQLNELQLKKYTDPYIKLKLIFERTIELI 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             + P+E A+E  F  K+  + LKLG+A+ +A+ +     +PV+EY P  IK A+ G G+
Sbjct: 61  DTFNPDEIAIEAPFFGKNVQSMLKLGRAQGVAMAAGLSREVPVTEYLPKKIKMAITGNGN 120

Query: 121 GDKKQIHMMLK-MLMPESFFKGKDAADALAIAVCHAYHA 158
             K+Q+  ML+ +L  ++  K  D+ D LA AVCH Y+ 
Sbjct: 121 ASKEQVAKMLQSVLKLKTLPKNLDSTDGLAAAVCHFYNT 159


>gi|325832017|ref|ZP_08165114.1| crossover junction endodeoxyribonuclease RuvC [Eggerthella sp.
           HGA1]
 gi|325486338|gb|EGC88790.1| crossover junction endodeoxyribonuclease RuvC [Eggerthella sp.
           HGA1]
          Length = 187

 Score = 90.9 bits (224), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 57/152 (37%), Positives = 87/152 (57%), Gaps = 1/152 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPGL  TGWGIV+  G  L   + G + +     LA RL +++E +  VI  +RP 
Sbjct: 8   ILGIDPGLANTGWGIVEQRGPRLACTAYGCVSTPKELPLAQRLRKIHEQMAAVIARFRPT 67

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
            A +E V+   +  +    GQAR  A+++ A   + V E++P+ IK AV+G G  +K Q+
Sbjct: 68  CAGIETVWFGVNVQSAFATGQARGAALVACAECDLEVLEFSPSQIKLAVVGTGSAEKDQV 127

Query: 127 HMMLKMLMP-ESFFKGKDAADALAIAVCHAYH 157
             M++ L+  E   +   AADALA A+C+  H
Sbjct: 128 QYMVRQLLALEDVPRPDHAADALAAAICYTTH 159


>gi|325111100|ref|YP_004272168.1| Crossover junction endodeoxyribonuclease ruvC [Planctomyces
           brasiliensis DSM 5305]
 gi|324971368|gb|ADY62146.1| Crossover junction endodeoxyribonuclease ruvC [Planctomyces
           brasiliensis DSM 5305]
          Length = 167

 Score = 90.9 bits (224), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 82/158 (51%), Gaps = 2/158 (1%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M +  RI+GIDPGL RTG+G++            G I +    +LA R+ ++   +  VI
Sbjct: 1   MAQEQRILGIDPGLTRTGYGVLHAQDGRTILDEGGVIATTTNDTLADRIHEIATEVKAVI 60

Query: 61  KNWRPEEAAVEQVF-VNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVG 119
            +W+P    +EQVF + K+  + + +   R   +      R+ V  Y P  IKK + G G
Sbjct: 61  NDWKPSVMVIEQVFSLGKNPKSAILMAHVRGALLALARQERLRVVHYKPTQIKKLLTGSG 120

Query: 120 HGDKKQIHMMLKM-LMPESFFKGKDAADALAIAVCHAY 156
             +K+Q+ +++K  L      +  D ADALAIA+CH +
Sbjct: 121 RANKEQMQLVVKAELGLTEVPRPHDVADALAIALCHLH 158


>gi|217077386|ref|YP_002335104.1| crossover junction endodeoxyribonuclease RuvC [Thermosipho
           africanus TCF52B]
 gi|226725477|sp|B7ICN6|RUVC_THEAB RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|217037241|gb|ACJ75763.1| crossover junction endodeoxyribonuclease RuvC [Thermosipho
           africanus TCF52B]
          Length = 157

 Score = 90.9 bits (224), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 75/130 (57%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RIIG+DPG    G+GI++   + +  V+ G I +     +  RL  +Y+   ++++ + 
Sbjct: 1   MRIIGVDPGYGILGYGILEKNKNKISHVTHGVITTEKDVPMYKRLGYIYDRFVELLEEYS 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  A+E +F  K+    + +G+AR + +L+ +   IP+ E+ P  +K  V G G  DKK
Sbjct: 61  PDACAIESLFFYKNVKTAIHVGEARGVILLASSQRNIPLYEFTPYQVKNNVTGYGRADKK 120

Query: 125 QIHMMLKMLM 134
           Q+  M+KML+
Sbjct: 121 QVQKMVKMLL 130


>gi|110597083|ref|ZP_01385372.1| crossover junction endodeoxyribonuclease RuvC [Chlorobium
           ferrooxidans DSM 13031]
 gi|110341274|gb|EAT59739.1| crossover junction endodeoxyribonuclease RuvC [Chlorobium
           ferrooxidans DSM 13031]
          Length = 188

 Score = 90.9 bits (224), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 57/160 (35%), Positives = 86/160 (53%), Gaps = 11/160 (6%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           ++GIDPG   TG+G++      L  ++SG I     +S A R+ Q+Y  L  +I  + P+
Sbjct: 3   VLGIDPGSLITGYGVIRQESGVLRVLASGVIRMQASRSHAERIGQIYRELDALITAFVPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALAR-IPVSEYAPNTIKKAVIGVGHGDKKQ 125
              +E VF+NK+  + LKLGQ R  A+++  + R + + EYAP  +K AV G G   K+Q
Sbjct: 63  RVVLETVFLNKNVQSALKLGQVRG-AVIALVMNRNLLLHEYAPREVKSAVTGRGSATKEQ 121

Query: 126 IHMMLKMLM-----PESFFKGKDAADALAIAVCHAYHANS 160
           +  M+  L+     PE F    D  DAL IA+C      S
Sbjct: 122 VAFMVGRLLGLNPVPEPF----DVTDALGIALCDLLRGES 157


>gi|325678948|ref|ZP_08158546.1| crossover junction endodeoxyribonuclease RuvC [Ruminococcus albus
           8]
 gi|324109452|gb|EGC03670.1| crossover junction endodeoxyribonuclease RuvC [Ruminococcus albus
           8]
          Length = 170

 Score = 90.9 bits (224), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 73/130 (56%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPG    G+G V+        V  GTI +        RL  +Y  +  +I+++R
Sbjct: 1   MRIMGIDPGYGIVGYGFVEYDHGKFTPVKVGTITTPSDMEFYKRLRVIYLDMQKLIEHYR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+E AVE++F N +    + + QAR + +L   +  +P+ +Y P  +K ++ G G+ +KK
Sbjct: 61  PDEIAVEKLFFNTNITTGIDVAQARGVTLLPAVMMNLPIYDYTPLQVKSSITGYGYAEKK 120

Query: 125 QIHMMLKMLM 134
           Q+  M++ ++
Sbjct: 121 QVQEMVRSML 130


>gi|167763317|ref|ZP_02435444.1| hypothetical protein BACSTE_01691 [Bacteroides stercoris ATCC
           43183]
 gi|167698611|gb|EDS15190.1| hypothetical protein BACSTE_01691 [Bacteroides stercoris ATCC
           43183]
          Length = 189

 Score = 90.9 bits (224), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 58/166 (34%), Positives = 91/166 (54%), Gaps = 10/166 (6%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG    G+G++ VAG     ++ G I          +L  ++E +  +I+++ P+
Sbjct: 10  ILGIDPGTTIMGYGVLRVAGTKPEMIAMGIIDFRKFGDHYLKLRHIHERVLGIIESYLPD 69

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALAR-IPVSEYAPNTIKKAVIGVGHGDKKQ 125
           E A+E  F  K+  + LKLG+A+ +A ++ AL+R IP++EYAP  IK A+ G G   K+Q
Sbjct: 70  ELAIEAPFFGKNVQSMLKLGRAQGVA-MAAALSRDIPITEYAPLKIKMAITGNGQASKEQ 128

Query: 126 IHMMLKMLM---PESFFKGKDAADALAIAVCHAYH-----ANSGYY 163
           +  ML+ ++    E      DA D LA A CH        A  GY+
Sbjct: 129 VADMLQRMLHFPKEEMPVFMDATDGLAAAYCHFLQMGRPVAEKGYH 174


>gi|317060583|ref|ZP_07925068.1| crossover junction endodeoxyribonuclease ruvC [Fusobacterium sp.
           D12]
 gi|313686259|gb|EFS23094.1| crossover junction endodeoxyribonuclease ruvC [Fusobacterium sp.
           D12]
          Length = 191

 Score = 90.5 bits (223), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 43/131 (32%), Positives = 73/131 (55%)

Query: 4   SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
            +R++GIDPG    G+GI+D        V  G I +     +  RL +++E L+ +I+ +
Sbjct: 2   KMRVLGIDPGTAIVGYGIIDYEKGKFQIVDYGCIYTAKDLPMEDRLVKIHEELSALIEKY 61

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RPEE AVE++F  K+    + +GQAR + +L+  L  + +  Y P  +K  + G G  +K
Sbjct: 62  RPEEMAVEELFYFKNNKTVISVGQARGVIVLTGRLHGLQMHAYTPLQVKMGITGYGRAEK 121

Query: 124 KQIHMMLKMLM 134
           KQI  M++  +
Sbjct: 122 KQIQQMVQRFL 132


>gi|72382538|ref|YP_291893.1| Holliday junction resolvase [Prochlorococcus marinus str. NATL2A]
 gi|110282921|sp|Q46JY8|RUVC_PROMT RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|72002388|gb|AAZ58190.1| Holliday junction endonuclease RuvC [Prochlorococcus marinus str.
           NATL2A]
          Length = 154

 Score = 90.5 bits (223), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 45/122 (36%), Positives = 68/122 (55%), Gaps = 1/122 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RIIGIDPGL R G+GI+D        +  G I +   Q    RL ++   L+ +IK W 
Sbjct: 1   MRIIGIDPGLARVGYGIIDEIEGKKIMIDCGIIETKSTQKEEERLVEISNDLSSIIKKWN 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P  AAVE+ F  + +  T+ + QAR + +++    ++P+ E+ P  IK AV G GH DK 
Sbjct: 61  PNSAAVEKFFFYRSS-TTISVVQARGVIMMTLGKYKLPIQEFPPMQIKLAVTGYGHSDKN 119

Query: 125 QI 126
            +
Sbjct: 120 DV 121


>gi|257462966|ref|ZP_05627370.1| crossover junction endodeoxyribonuclease ruvC [Fusobacterium sp.
           D12]
          Length = 189

 Score = 90.5 bits (223), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 43/130 (33%), Positives = 73/130 (56%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPG    G+GI+D        V  G I +     +  RL +++E L+ +I+ +R
Sbjct: 1   MRVLGIDPGTAIVGYGIIDYEKGKFQIVDYGCIYTAKDLPMEDRLVKIHEELSALIEKYR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           PEE AVE++F  K+    + +GQAR + +L+  L  + +  Y P  +K  + G G  +KK
Sbjct: 61  PEEMAVEELFYFKNNKTVISVGQARGVIVLTGRLHGLQMHAYTPLQVKMGITGYGRAEKK 120

Query: 125 QIHMMLKMLM 134
           QI  M++  +
Sbjct: 121 QIQQMVQRFL 130


>gi|294673564|ref|YP_003574180.1| crossover junction endodeoxyribonuclease RuvC [Prevotella
           ruminicola 23]
 gi|294473525|gb|ADE82914.1| crossover junction endodeoxyribonuclease RuvC [Prevotella
           ruminicola 23]
          Length = 189

 Score = 90.5 bits (223), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 53/151 (35%), Positives = 80/151 (52%), Gaps = 3/151 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG    G+G++ V       ++ G I          +L  ++E +T +I  + P+
Sbjct: 5   ILGIDPGTNLMGYGLLKVVDGKAQMMTMGVIDLRKFPDAYLKLGHIFERVTGIIDGFLPD 64

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E  F  K+  + LKLG+A+  AI +     +P+ EYAP  IK A+ G G   K+Q+
Sbjct: 65  EMAIEAPFFGKNVQSMLKLGRAQGTAIAAAVHHGVPIHEYAPMKIKMALTGNGGASKEQV 124

Query: 127 HMMLKMLMP---ESFFKGKDAADALAIAVCH 154
             ML+ L+    +   K  DA DALA A CH
Sbjct: 125 AGMLQRLLKIPNDEMGKYMDATDALAAAYCH 155


>gi|224540498|ref|ZP_03681037.1| hypothetical protein BACCELL_05411 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224517879|gb|EEF86984.1| hypothetical protein BACCELL_05411 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 189

 Score = 90.5 bits (223), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 54/152 (35%), Positives = 86/152 (56%), Gaps = 5/152 (3%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG    G+G++ V G     ++ G I          +L  ++E +  +I+++ P+
Sbjct: 10  ILGIDPGTTIMGYGVLRVQGTKPEMIAMGIIDLRKMGDHYLKLRHIHERVLSIIESYLPD 69

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALAR-IPVSEYAPNTIKKAVIGVGHGDKKQ 125
           E A+E  F  K+  + LKLG+A+ +A ++ AL+R IP++EYAP  IK A+ G G   K+Q
Sbjct: 70  ELAIEAPFFGKNVQSMLKLGRAQGVA-MAAALSRDIPITEYAPLKIKMAITGNGQASKEQ 128

Query: 126 IHMMLKMLM---PESFFKGKDAADALAIAVCH 154
           +  ML+ ++    E      DA D LA A CH
Sbjct: 129 VADMLQRMLHFAKEDMPTFMDATDGLAAAYCH 160


>gi|160888818|ref|ZP_02069821.1| hypothetical protein BACUNI_01237 [Bacteroides uniformis ATCC 8492]
 gi|270293592|ref|ZP_06199794.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides sp. D20]
 gi|317479439|ref|ZP_07938572.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides sp.
           4_1_36]
 gi|156861717|gb|EDO55148.1| hypothetical protein BACUNI_01237 [Bacteroides uniformis ATCC 8492]
 gi|270275059|gb|EFA20919.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides sp. D20]
 gi|316904405|gb|EFV26226.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides sp.
           4_1_36]
          Length = 189

 Score = 90.5 bits (223), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 55/152 (36%), Positives = 87/152 (57%), Gaps = 5/152 (3%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG    G+G++ VAG     ++ G I          +L  ++E +  +I+++ P+
Sbjct: 10  ILGIDPGTTIMGYGVLRVAGVKPEMIAMGIIDLRKFGDHYLKLRHIHERVLSIIESYLPD 69

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALAR-IPVSEYAPNTIKKAVIGVGHGDKKQ 125
           E A+E  F  K+  + LKLG+A+ +A ++ AL+R IP++EYAP  IK A+ G G   K+Q
Sbjct: 70  ELAIEAPFFGKNVQSMLKLGRAQGVA-MAAALSRDIPITEYAPLKIKMAITGNGQASKEQ 128

Query: 126 IHMMLKMLM---PESFFKGKDAADALAIAVCH 154
           +  ML+ ++    E      DA D LA A CH
Sbjct: 129 VADMLQRMLHFPKEDMPTFMDATDGLAAAYCH 160


>gi|290769834|gb|ADD61607.1| putative protein [uncultured organism]
          Length = 189

 Score = 90.5 bits (223), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 76/155 (49%), Gaps = 1/155 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           + GIDPG    GWG ++   +    +  G I +        RL  +Y+    ++   RP+
Sbjct: 24  VFGIDPGYAIVGWGAINFQSNTYKTLGYGAIETVAGTDFNKRLEYIYDETYAILNRCRPD 83

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+E+++   +    + + QAR + +L+    +IP+ EY P  +K AV G G   K Q+
Sbjct: 84  ALAIEKLYFQTNQKTAINVAQARGVTLLAAQKLKIPIFEYTPLQVKTAVTGYGKAKKPQV 143

Query: 127 -HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
             M  ++L  +   K  D  DALAIA+CH   A S
Sbjct: 144 MEMTARLLKLKEIPKPDDTCDALAIAICHTQAAGS 178


>gi|161511192|ref|NP_810577.2| Holliday junction resolvase [Bacteroides thetaiotaomicron VPI-5482]
 gi|253571815|ref|ZP_04849220.1| holliday junction resolvase [Bacteroides sp. 1_1_6]
 gi|298387606|ref|ZP_06997158.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides sp.
           1_1_14]
 gi|251838412|gb|EES66498.1| holliday junction resolvase [Bacteroides sp. 1_1_6]
 gi|298259813|gb|EFI02685.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides sp.
           1_1_14]
          Length = 188

 Score = 90.1 bits (222), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 54/152 (35%), Positives = 87/152 (57%), Gaps = 5/152 (3%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG    G+G++ V G     ++ G I      +   +L  ++E +  +I+++ P+
Sbjct: 10  ILGIDPGTTIMGYGVLRVKGTKPEMIAMGIIDLRKFANHYLKLRHIHERVLSIIESYLPD 69

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALAR-IPVSEYAPNTIKKAVIGVGHGDKKQ 125
           E A+E  F  K+  + LKLG+A+ +A ++ AL+R IP++EYAP  IK A+ G G   K+Q
Sbjct: 70  ELAIEAPFFGKNVQSMLKLGRAQGVA-MAVALSRDIPITEYAPLKIKMAITGNGQASKEQ 128

Query: 126 IHMMLKMLM---PESFFKGKDAADALAIAVCH 154
           +  ML+ ++    E      DA D LA A CH
Sbjct: 129 VADMLQRMLHFPKEEMPTFMDATDGLAAAYCH 160


>gi|282880737|ref|ZP_06289438.1| crossover junction endodeoxyribonuclease RuvC [Prevotella
           timonensis CRIS 5C-B1]
 gi|281305399|gb|EFA97458.1| crossover junction endodeoxyribonuclease RuvC [Prevotella
           timonensis CRIS 5C-B1]
          Length = 196

 Score = 90.1 bits (222), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 54/155 (34%), Positives = 81/155 (52%), Gaps = 11/155 (7%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG    G+G++ +       ++ G I          +L  ++E +T +I  + P+
Sbjct: 13  ILGIDPGTNVMGYGVLRIVKGKPSMLAMGVIDMRKTGDPYLKLGHIFERVTGIIDEYLPD 72

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E  F  K+  + LKLG+A+ +AI +     IP+ EYAP  IK ++ G G   K+Q+
Sbjct: 73  EMAIEAPFFGKNVQSMLKLGRAQGVAIAAAIQHDIPIHEYAPLKIKMSITGQGQASKEQV 132

Query: 127 HMMLKML-------MPESFFKGKDAADALAIAVCH 154
             ML+ L       MP SF    DA DAL  A CH
Sbjct: 133 AGMLQRLLKIDAQEMP-SFM---DATDALGAAYCH 163


>gi|325279153|ref|YP_004251695.1| Crossover junction endodeoxyribonuclease ruvC [Odoribacter
           splanchnicus DSM 20712]
 gi|324310962|gb|ADY31515.1| Crossover junction endodeoxyribonuclease ruvC [Odoribacter
           splanchnicus DSM 20712]
          Length = 185

 Score = 90.1 bits (222), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 56/152 (36%), Positives = 87/152 (57%), Gaps = 5/152 (3%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLC--FVSSGTIVSCVRQSLAF-RLCQLYEGLTDVIKNW 63
           I+GIDPG    G+ I+ V G N     V SG IV  ++ +  + +L +++     VI ++
Sbjct: 5   IMGIDPGTNFMGYAIIKVFGKNQKPELVVSG-IVDMIKITDPYIKLQRIFSRTLQVIDSY 63

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +P+E A+E  F  K+  + LKLG+A+ +AI +     IP+ EYAP  IK +V G G   K
Sbjct: 64  QPDELAIEAQFYGKNVQSMLKLGRAQGVAIAAALQRDIPIFEYAPRKIKMSVTGSGTASK 123

Query: 124 KQIHMML-KMLMPESFFKGKDAADALAIAVCH 154
           +QI ++L K +   +  +  D  DA+AIA CH
Sbjct: 124 EQIALLLGKFMTLHTTSEMLDETDAIAIAYCH 155


>gi|159903678|ref|YP_001551022.1| Holliday junction resolvase [Prochlorococcus marinus str. MIT 9211]
 gi|238687111|sp|A9BB56|RUVC_PROM4 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|159888854|gb|ABX09068.1| Crossover junction endodeoxyribonuclease RuvC [Prochlorococcus
           marinus str. MIT 9211]
          Length = 158

 Score = 90.1 bits (222), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 51/152 (33%), Positives = 85/152 (55%), Gaps = 2/152 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPGL R G+G++D        +  G I +    +   R+ ++   L  +I  W+P+
Sbjct: 3   ILGIDPGLARVGYGLIDCNMTQKKMLDCGIIKTSQDHNDGERMVEITRDLRYLINKWKPQ 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
            A+VE+ F  + +  T+K+ QAR + I++ A  R+P+ E+ P  IK AV G G  +K ++
Sbjct: 63  IASVEKFFFYRSS-TTIKVVQARGVVIMTLARFRVPILEFPPMQIKLAVTGSGKANKDEV 121

Query: 127 HM-MLKMLMPESFFKGKDAADALAIAVCHAYH 157
            M +++ L      +  DA+DALAIA+   Y 
Sbjct: 122 SMAVIRELDLSKPPRPDDASDALAIALTAYYQ 153


>gi|189466727|ref|ZP_03015512.1| hypothetical protein BACINT_03102 [Bacteroides intestinalis DSM
           17393]
 gi|189434991|gb|EDV03976.1| hypothetical protein BACINT_03102 [Bacteroides intestinalis DSM
           17393]
          Length = 189

 Score = 90.1 bits (222), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 54/152 (35%), Positives = 86/152 (56%), Gaps = 5/152 (3%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG    G+G++ V G     ++ G I          +L  ++E +  +I+++ P+
Sbjct: 10  ILGIDPGTTIMGYGVLRVVGTKPEMIAMGIIDLRKFGDHYLKLRHIHERVLSIIESYLPD 69

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALAR-IPVSEYAPNTIKKAVIGVGHGDKKQ 125
           E A+E  F  K+  + LKLG+A+ +A ++ AL+R IP++EYAP  IK A+ G G   K+Q
Sbjct: 70  ELAIEAPFFGKNVQSMLKLGRAQGVA-MAAALSRDIPITEYAPLKIKMAITGNGQASKEQ 128

Query: 126 IHMMLKMLM---PESFFKGKDAADALAIAVCH 154
           +  ML+ ++    E      DA D LA A CH
Sbjct: 129 VADMLQRMLHFAKEDMPTFMDATDGLAAAYCH 160


>gi|221194795|ref|ZP_03567852.1| crossover junction endodeoxyribonuclease RuvC [Atopobium rimae ATCC
           49626]
 gi|221185699|gb|EEE18089.1| crossover junction endodeoxyribonuclease RuvC [Atopobium rimae ATCC
           49626]
          Length = 167

 Score = 90.1 bits (222), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 54/150 (36%), Positives = 87/150 (58%), Gaps = 1/150 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+G+DPGL  TGWGIV+  G      + G + +   + +  RL ++Y+ L+ VI+ + P 
Sbjct: 3   ILGVDPGLAHTGWGIVETRGSVCRARAYGCVETKAHEPIDMRLGRIYDELSRVIQKYEPT 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             ++E ++  ++  + +   QAR  AI++ + A + V EY P  IK+AV+G G  DK Q+
Sbjct: 63  ALSIEGIYFGQNVRSAIPTAQARGAAIVACSKAGLTVGEYTPMQIKQAVVGTGSADKAQV 122

Query: 127 HMMLKMLMPESFFKGKD-AADALAIAVCHA 155
             M++ ++        D AADALA AVCHA
Sbjct: 123 MYMIRSVLALDHEPHPDHAADALAAAVCHA 152


>gi|319902833|ref|YP_004162561.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides
           helcogenes P 36-108]
 gi|319417864|gb|ADV44975.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides
           helcogenes P 36-108]
          Length = 189

 Score = 90.1 bits (222), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 54/152 (35%), Positives = 87/152 (57%), Gaps = 5/152 (3%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG    G+GI+ + G     ++ G I      +   +L  ++E +  +I+++ P+
Sbjct: 10  ILGIDPGTTIMGYGILRIVGTKPEMIAMGIIDLRKFGNHYLKLRHIHERVLSIIESYLPD 69

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALAR-IPVSEYAPNTIKKAVIGVGHGDKKQ 125
           E A+E  F  K+  + LKLG+A+ +A ++ AL+R IP++EYAP  IK A+ G G   K+Q
Sbjct: 70  ELAIEAPFFGKNVQSMLKLGRAQGVA-MAVALSRDIPITEYAPLKIKMAITGNGQASKEQ 128

Query: 126 IHMMLKMLM---PESFFKGKDAADALAIAVCH 154
           +  ML+ ++    E      DA D LA A CH
Sbjct: 129 VADMLQRMLRFPKEDMPTFMDATDGLAAAYCH 160


>gi|160886386|ref|ZP_02067389.1| hypothetical protein BACOVA_04396 [Bacteroides ovatus ATCC 8483]
 gi|237723258|ref|ZP_04553739.1| holliday junction resolvase [Bacteroides sp. 2_2_4]
 gi|260173482|ref|ZP_05759894.1| Holliday junction resolvase [Bacteroides sp. D2]
 gi|293372766|ref|ZP_06619147.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides ovatus
           SD CMC 3f]
 gi|298482941|ref|ZP_07001123.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides sp. D22]
 gi|299146874|ref|ZP_07039942.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides sp.
           3_1_23]
 gi|315921752|ref|ZP_07917992.1| holliday junction resolvase [Bacteroides sp. D2]
 gi|156108271|gb|EDO10016.1| hypothetical protein BACOVA_04396 [Bacteroides ovatus ATCC 8483]
 gi|229447780|gb|EEO53571.1| holliday junction resolvase [Bacteroides sp. 2_2_4]
 gi|292632275|gb|EFF50872.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides ovatus
           SD CMC 3f]
 gi|298270913|gb|EFI12492.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides sp. D22]
 gi|298517365|gb|EFI41246.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides sp.
           3_1_23]
 gi|313695627|gb|EFS32462.1| holliday junction resolvase [Bacteroides sp. D2]
          Length = 188

 Score = 89.7 bits (221), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 54/152 (35%), Positives = 87/152 (57%), Gaps = 5/152 (3%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG    G+G++ V G     ++ G I      +   +L  ++E +  +I+++ P+
Sbjct: 10  ILGIDPGTTIMGYGVLRVKGTKPEMIAMGIIDLRKFANHYLKLRHIHERVLSIIESYLPD 69

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALAR-IPVSEYAPNTIKKAVIGVGHGDKKQ 125
           E A+E  F  K+  + LKLG+A+ +A ++ AL+R IP++EYAP  IK A+ G G   K+Q
Sbjct: 70  ELAIEAPFFGKNVQSMLKLGRAQGVA-MAVALSRDIPITEYAPLKIKMAITGNGQASKEQ 128

Query: 126 IHMMLKMLM---PESFFKGKDAADALAIAVCH 154
           +  ML+ ++    E      DA D LA A CH
Sbjct: 129 VADMLQRMLRFPKEDMPTFMDATDGLAAAYCH 160


>gi|146299137|ref|YP_001193728.1| Holliday junction resolvase [Flavobacterium johnsoniae UW101]
 gi|146153555|gb|ABQ04409.1| crossover junction endodeoxyribonuclease RuvC [Flavobacterium
           johnsoniae UW101]
          Length = 184

 Score = 89.7 bits (221), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/156 (33%), Positives = 86/156 (55%), Gaps = 3/156 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG    G+G++ V    + F+    +      +   +L  ++E   ++I+   P+
Sbjct: 7   ILGIDPGTTIMGFGLIKVINKKMEFLQLNELQLSKYDNHYQKLRIIFERTIELIETHCPD 66

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E  F  K+  + LKLG+A+ +A+ +     IP++EY P  IK A+ G G+  K+Q+
Sbjct: 67  EIAIEAPFFGKNVQSMLKLGRAQGVAMAAGLSRGIPITEYEPKKIKMAITGNGNASKEQV 126

Query: 127 HMMLKMLMP-ESFFKGKDAADALAIAVCHAYHANSG 161
             ML+ L+  +   K  D+ D LA AVCH +  NSG
Sbjct: 127 AKMLQQLLGLKELPKNLDSTDGLAAAVCHFF--NSG 160


>gi|149175962|ref|ZP_01854579.1| crossover junction endodeoxyribonuclease ruvC [Planctomyces maris
           DSM 8797]
 gi|148845116|gb|EDL59462.1| crossover junction endodeoxyribonuclease ruvC [Planctomyces maris
           DSM 8797]
          Length = 170

 Score = 89.7 bits (221), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 54/161 (33%), Positives = 87/161 (54%), Gaps = 7/161 (4%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVD--VAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTD 58
           +  ++R +GIDPGL RTG+ ++   V G  LC    G I S    +LA R+ ++  G+ +
Sbjct: 6   LTTAVRFLGIDPGLNRTGYALLQQSVKGPVLC--EGGIIRSNQEANLAARVHEIASGIRE 63

Query: 59  VIKNWRPEEAAVEQVFVN-KDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIG 117
           VI  ++P+   +EQVF   +   +++ +  AR   + +   A +PV  Y P  IKK + G
Sbjct: 64  VIAEYQPDVMVIEQVFTTPRFPKSSIIMAHARGAILFAAHDAGVPVVHYTPTQIKKLITG 123

Query: 118 VGHGDKKQIHMMLKM-LMPESFFKGKDAADALAIAVCHAYH 157
            G   K+Q+   +K  L  ++  +  D ADA A A+CH YH
Sbjct: 124 SGRASKEQMQHAIKTELGLKAILEPNDVADAFAAALCH-YH 163


>gi|218130384|ref|ZP_03459188.1| hypothetical protein BACEGG_01973 [Bacteroides eggerthii DSM 20697]
 gi|317473845|ref|ZP_07933125.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides
           eggerthii 1_2_48FAA]
 gi|217987385|gb|EEC53715.1| hypothetical protein BACEGG_01973 [Bacteroides eggerthii DSM 20697]
 gi|316909922|gb|EFV31596.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides
           eggerthii 1_2_48FAA]
          Length = 189

 Score = 89.7 bits (221), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 58/166 (34%), Positives = 91/166 (54%), Gaps = 10/166 (6%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG    G+G++ VAG     ++ G I          +L  ++E +  +I+++ P+
Sbjct: 10  ILGIDPGTTIMGYGVLRVAGVKPEMIAMGIIDLRKFGDHYLKLRHIHERVLSIIESYLPD 69

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALAR-IPVSEYAPNTIKKAVIGVGHGDKKQ 125
           E A+E  F  K+  + LKLG+A+ +A ++ AL+R IP++EYAP  IK A+ G G   K+Q
Sbjct: 70  ELAIEAPFFGKNVQSMLKLGRAQGVA-MAAALSRDIPITEYAPLKIKMAITGNGQASKEQ 128

Query: 126 IHMMLKMLM---PESFFKGKDAADALAIAVCHAYH-----ANSGYY 163
           +  ML+ ++    E      DA D LA A CH        A  GY+
Sbjct: 129 VADMLQRMLHFPKEEMPVFLDATDGLAAAYCHFLQMGRPAAEKGYH 174


>gi|329956855|ref|ZP_08297423.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides clarus
           YIT 12056]
 gi|328523612|gb|EGF50704.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides clarus
           YIT 12056]
          Length = 189

 Score = 89.7 bits (221), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/152 (36%), Positives = 87/152 (57%), Gaps = 5/152 (3%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG    G+G++ VAG     ++ G I          +L  ++E +  +I+++ P+
Sbjct: 10  ILGIDPGTTIMGYGVLRVAGVKPEMIAMGIIDLRKFGDHYLKLRHIHERVLSIIESYLPD 69

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALAR-IPVSEYAPNTIKKAVIGVGHGDKKQ 125
           E A+E  F  K+  + LKLG+A+ +A ++ AL+R IP++EYAP  IK A+ G G   K+Q
Sbjct: 70  ELAIEAPFFGKNVQSMLKLGRAQGVA-MAAALSRDIPITEYAPLKIKMAITGNGQASKEQ 128

Query: 126 IHMMLKMLM---PESFFKGKDAADALAIAVCH 154
           +  ML+ ++    E      DA D LA A CH
Sbjct: 129 VADMLQRMLHFPKEDMPVFMDATDGLAAAYCH 160


>gi|124026239|ref|YP_001015355.1| crossover junction endodeoxyribonuclease RuvC [Prochlorococcus
           marinus str. NATL1A]
 gi|166233281|sp|A2C3N0|RUVC_PROM1 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|123961307|gb|ABM76090.1| Crossover junction endodeoxyribonuclease RuvC [Prochlorococcus
           marinus str. NATL1A]
          Length = 154

 Score = 89.7 bits (221), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 44/122 (36%), Positives = 69/122 (56%), Gaps = 1/122 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RIIGIDPGL R G+GI+D        +  G I +   +    RL ++   L+ +IK W 
Sbjct: 1   MRIIGIDPGLARVGYGIIDEIEGKKIMIDCGIIETKSTKKEEERLVEISNDLSSIIKKWN 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P  AAVE+ F  + +  T+ + QAR + +++    ++P+ E+ P  IK AV G GH DK 
Sbjct: 61  PNSAAVEKFFFYRSS-TTISVVQARGVIMMTLGKYKLPIQEFPPMQIKLAVTGYGHSDKN 119

Query: 125 QI 126
           ++
Sbjct: 120 EV 121


>gi|313203724|ref|YP_004042381.1| crossover junction endodeoxyribonuclease ruvc [Paludibacter
           propionicigenes WB4]
 gi|312443040|gb|ADQ79396.1| crossover junction endodeoxyribonuclease RuvC [Paludibacter
           propionicigenes WB4]
          Length = 198

 Score = 89.7 bits (221), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 86/158 (54%), Gaps = 5/158 (3%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M K   I+GIDPG    G+GI+ V+G+    ++ G +      +   +L +++     +I
Sbjct: 1   MIKEHIILGIDPGTTIMGYGILKVSGNKTEMLAMGVLDLKKYSNHYLKLQRVFARTLSLI 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALAR-IPVSEYAPNTIKKAVIGVG 119
             + P+  A+E  F  K+  + LKLG+A+ +A +S AL R +P++EYAP  IK A+ G G
Sbjct: 61  DEFHPDHLAIEAPFFGKNVQSMLKLGRAQGVA-MSAALYRDVPITEYAPLKIKMAITGSG 119

Query: 120 HGDKKQIHMMLKMLMP---ESFFKGKDAADALAIAVCH 154
              K+Q+  ML+  +    ES     DA D LA A CH
Sbjct: 120 SASKEQVADMLRRYLKIPQESMLPQLDATDGLAAAYCH 157


>gi|257466060|ref|ZP_05630371.1| crossover junction endodeoxyribonuclease ruvC [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|315917215|ref|ZP_07913455.1| crossover junction endodeoxyribonuclease ruvC [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|313691090|gb|EFS27925.1| crossover junction endodeoxyribonuclease ruvC [Fusobacterium
           gonidiaformans ATCC 25563]
          Length = 189

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 73/130 (56%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPG    G+G++D        V  G I +     +  RL +++E L+ +I+ ++
Sbjct: 1   MRILGIDPGTAIVGYGVIDYEKGKFHVVDYGCIYTEKDLPMEDRLIKIHEELSSLIQKYQ 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           PEE AVE++F  K+    + +GQAR + +L+  L  + +  Y P  +K  + G G  +KK
Sbjct: 61  PEEMAVEELFYFKNNKTVISVGQARGVIVLTGRLHGLQIHSYTPLQVKMGITGYGRAEKK 120

Query: 125 QIHMMLKMLM 134
           QI  M++  +
Sbjct: 121 QIQQMVQRFL 130


>gi|257452147|ref|ZP_05617446.1| crossover junction endodeoxyribonuclease ruvC [Fusobacterium sp.
           3_1_5R]
 gi|317058692|ref|ZP_07923177.1| crossover junction endodeoxyribonuclease ruvC [Fusobacterium sp.
           3_1_5R]
 gi|313684368|gb|EFS21203.1| crossover junction endodeoxyribonuclease ruvC [Fusobacterium sp.
           3_1_5R]
          Length = 189

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 73/130 (56%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPG    G+G++D        V  G I +     +  RL +++E L+ +I+ ++
Sbjct: 1   MRILGIDPGTAIVGYGVIDYEKGKFHVVDYGCIYTEKDLPMEDRLVKVHEELSSLIQKYQ 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           PEE AVE++F  K+    + +GQAR + +L+  L  + +  Y P  +K  + G G  +KK
Sbjct: 61  PEEMAVEELFYFKNNKTVISVGQARGVIVLTGRLHGLQIHSYTPLQVKMGITGYGRAEKK 120

Query: 125 QIHMMLKMLM 134
           QI  M++  +
Sbjct: 121 QIQQMVQRFL 130


>gi|260889010|ref|ZP_05900273.1| crossover junction endodeoxyribonuclease RuvC [Leptotrichia
           hofstadii F0254]
 gi|260861070|gb|EEX75570.1| crossover junction endodeoxyribonuclease RuvC [Leptotrichia
           hofstadii F0254]
          Length = 189

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 73/130 (56%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+G+DPG    G+ IVD        +  G I +   + +  RL ++Y+GL ++IK W+
Sbjct: 1   MRILGVDPGTAIVGYAIVDYENGKYVPLDYGCIFTDKDEDMPVRLEKIYDGLENIIKLWK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P + A+E +F  K+    +K+GQAR +  L+    ++ +  Y P  +K  +   G  +KK
Sbjct: 61  PTDMAIEDLFFFKNQKTVIKVGQARGVITLAGQKNKLNLYSYTPLQVKMGIASYGRAEKK 120

Query: 125 QIHMMLKMLM 134
           QI  M+K+++
Sbjct: 121 QIQEMVKLIL 130


>gi|33865249|ref|NP_896808.1| Holliday junction resolvase [Synechococcus sp. WH 8102]
 gi|44888399|sp|Q7U8A6|RUVC_SYNPX RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|33632418|emb|CAE07230.1| Holliday junction resolvase RuvC [Synechococcus sp. WH 8102]
          Length = 154

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 44/122 (36%), Positives = 75/122 (61%), Gaps = 1/122 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGL R G+G++D +G +   +  G I +   +S   R+ ++   L  +I+ WR
Sbjct: 1   MRILGIDPGLARVGYGVIDTSGGHQRMLDCGIIRTDPGRSDGERMVEIASDLRQLIRAWR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           PE AAVE+ F  + +  T+ + QAR + +++ A  ++PV E+ P  IK A+ G GH +K 
Sbjct: 61  PELAAVEKFFFYRSS-NTINVVQARGVVMMTLARFKVPVVEFPPMQIKLALAGFGHAEKD 119

Query: 125 QI 126
           ++
Sbjct: 120 EV 121


>gi|297616927|ref|YP_003702086.1| crossover junction endodeoxyribonuclease RuvC [Syntrophothermus
           lipocalidus DSM 12680]
 gi|297144764|gb|ADI01521.1| crossover junction endodeoxyribonuclease RuvC [Syntrophothermus
           lipocalidus DSM 12680]
          Length = 165

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/153 (33%), Positives = 93/153 (60%), Gaps = 1/153 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           ++GIDPG   TG+G+++  G     +  G + +    + A RL +++  +  VI+ + P 
Sbjct: 3   VLGIDPGTATTGYGVLEDIGGKARLIDYGVVRTSSGTNQAIRLLEIHNRIEQVIQCYSPS 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             AVE++F +++A   + +GQAR + +++ A   + + EY P  +K+AV+G G+ DK+Q+
Sbjct: 63  VLAVEELFFSRNAKTAITVGQARGVVLMTAAERGLVIYEYTPLEVKQAVVGFGNADKRQV 122

Query: 127 HMMLK-MLMPESFFKGKDAADALAIAVCHAYHA 158
             M+K +L  +   K  DAADALA+A+CH + A
Sbjct: 123 QAMVKAILQMKEIPKPDDAADALAVAICHIHAA 155


>gi|60682570|ref|YP_212714.1| Holliday junction resolvase [Bacteroides fragilis NCTC 9343]
 gi|161936263|ref|YP_100540.2| Holliday junction resolvase [Bacteroides fragilis YCH46]
 gi|253565051|ref|ZP_04842507.1| Holliday junction resolvase [Bacteroides sp. 3_2_5]
 gi|265765990|ref|ZP_06094031.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides sp.
           2_1_16]
 gi|81314369|sp|Q5LAS7|RUVC_BACFN RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|60494004|emb|CAH08796.1| putative crossover junction endodeoxyribonuclease [Bacteroides
           fragilis NCTC 9343]
 gi|251946516|gb|EES86893.1| Holliday junction resolvase [Bacteroides sp. 3_2_5]
 gi|263253658|gb|EEZ25123.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides sp.
           2_1_16]
 gi|301164046|emb|CBW23602.1| putative crossover junction endodeoxyribonuclease [Bacteroides
           fragilis 638R]
          Length = 188

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/152 (35%), Positives = 87/152 (57%), Gaps = 5/152 (3%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG    G+G++ V G     ++ G I      +   +L  ++E +  +I+++ P+
Sbjct: 10  ILGIDPGTTIMGYGVLRVCGTRPEMIAMGIIDLRKFGNHYLKLRHIHERVLSIIESYLPD 69

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALAR-IPVSEYAPNTIKKAVIGVGHGDKKQ 125
           E A+E  F  K+  + LKLG+A+ +A ++ AL+R IP++EYAP  IK A+ G G   K+Q
Sbjct: 70  ELAIEAPFFGKNVQSMLKLGRAQGVA-MAAALSRDIPITEYAPLKIKMAITGNGQASKEQ 128

Query: 126 IHMMLKMLM---PESFFKGKDAADALAIAVCH 154
           +  ML+ ++    E      DA D LA A CH
Sbjct: 129 VADMLQRMLHFAKEDMPVFMDATDGLAAAYCH 160


>gi|118474695|ref|YP_892929.1| Holliday junction resolvase [Campylobacter fetus subsp. fetus
           82-40]
 gi|166231593|sp|A0RRU6|RUVC_CAMFF RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|118413921|gb|ABK82341.1| crossover junction endodeoxyribonuclease RuvC [Campylobacter fetus
           subsp. fetus 82-40]
          Length = 157

 Score = 89.0 bits (219), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/154 (33%), Positives = 82/154 (53%), Gaps = 2/154 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++I+GIDPG R  G+ +++  G+    + +G ++   + SL +++ QL EGL  + K+ +
Sbjct: 1   MKILGIDPGTRNCGYAVIEKTGNKKTLIEAG-LIKIKQDSLQYQITQLCEGLDIIFKSHK 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
            +  A+E +F   +    LKL Q R    L         SEY P  IKKAV G     K+
Sbjct: 60  IDAVAIEDIFYAHNPKTVLKLAQFRGALSLKILQIHGEFSEYTPLQIKKAVTGKAKAAKE 119

Query: 125 QIHMML-KMLMPESFFKGKDAADALAIAVCHAYH 157
           Q+  M+ KML      K  D  DA+AIA+ H+++
Sbjct: 120 QVAFMVKKMLGINQEIKPLDVTDAIAIALTHSFN 153


>gi|268608400|ref|ZP_06142127.1| crossover junction endodeoxyribonuclease RuvC [Ruminococcus
           flavefaciens FD-1]
          Length = 162

 Score = 89.0 bits (219), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 73/132 (55%)

Query: 3   KSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
           K IRI+GIDPG    G+G++D  G     +  G +++        RL  ++E +  + + 
Sbjct: 2   KKIRILGIDPGYAIVGFGVLDYDGVRFTPIEYGAVLTEAGTPFPERLRAIHEDIEFIFEK 61

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
           +RP+  AVE+++   +    + + QAR I +LS A   +PVSEY P  +K +V G G  +
Sbjct: 62  FRPDCMAVERLYFTTNQKTAIDVAQARGITVLSAAKRNVPVSEYTPLQVKLSVTGYGKAE 121

Query: 123 KKQIHMMLKMLM 134
           K+Q+  M + L+
Sbjct: 122 KRQVMEMTRQLL 133


>gi|289674669|ref|ZP_06495559.1| Holliday junction resolvase [Pseudomonas syringae pv. syringae FF5]
          Length = 137

 Score = 89.0 bits (219), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 46/113 (40%), Positives = 73/113 (64%)

Query: 48  RLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYA 107
           RL  +Y G+ +VIK + P    +E+VF+ ++A + LKLGQAR  AI++ A   + ++EY 
Sbjct: 7   RLQIVYRGVREVIKTYGPVTMGIEKVFMARNADSALKLGQARGAAIVAGAEEALEIAEYT 66

Query: 108 PNTIKKAVIGVGHGDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
              +K+AV G G  +K+Q+ MM+  L+  +     DA+DALAIA+CHA+  +S
Sbjct: 67  ATQVKQAVAGTGGANKEQVMMMVMHLLKLTQKPQIDASDALAIALCHAHTRSS 119


>gi|255010743|ref|ZP_05282869.1| Holliday junction resolvase [Bacteroides fragilis 3_1_12]
 gi|313148549|ref|ZP_07810742.1| holliday junction resolvase [Bacteroides fragilis 3_1_12]
 gi|313137316|gb|EFR54676.1| holliday junction resolvase [Bacteroides fragilis 3_1_12]
          Length = 188

 Score = 88.6 bits (218), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/152 (35%), Positives = 86/152 (56%), Gaps = 5/152 (3%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG    G+G++ V G     ++ G I          +L  ++E +  +I+++ P+
Sbjct: 10  ILGIDPGTTIMGYGVLRVRGTKPEMIAMGIIDLRKFGDHYLKLRHIHERVLSIIESYLPD 69

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALAR-IPVSEYAPNTIKKAVIGVGHGDKKQ 125
           E A+E  F  K+  + LKLG+A+ +A ++ AL+R IP++EYAP  IK A+ G G   K+Q
Sbjct: 70  ELAIEAPFFGKNVQSMLKLGRAQGVA-MAAALSRDIPITEYAPLKIKMAITGNGQASKEQ 128

Query: 126 IHMMLKMLM---PESFFKGKDAADALAIAVCH 154
           +  ML+ ++    E      DA D LA A CH
Sbjct: 129 VADMLQRMLHFAKEDMPVFMDATDGLAAAYCH 160


>gi|310778263|ref|YP_003966596.1| crossover junction endodeoxyribonuclease RuvC [Ilyobacter
           polytropus DSM 2926]
 gi|309747586|gb|ADO82248.1| crossover junction endodeoxyribonuclease RuvC [Ilyobacter
           polytropus DSM 2926]
          Length = 190

 Score = 88.6 bits (218), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 59/165 (35%), Positives = 92/165 (55%), Gaps = 1/165 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPG    G+GIVD   +N   V+ G I +     ++ RL ++Y+ L  +I+ ++
Sbjct: 1   MRVLGIDPGTATVGYGIVDFKNNNYDTVTYGCIYTDKDLPMSKRLEKIYDELYALIEEYK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P   AVE++F  K+    + +GQAR + IL      + +  Y P  +K  + G G  +KK
Sbjct: 61  PAHMAVEELFYFKNNKTVISVGQARGVIILCGEKQGLCLDSYTPLQVKMGITGYGKSEKK 120

Query: 125 QIHMML-KMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
           Q+ +M+ K+L      +  DAADALAIAV H    NSG Y I+  
Sbjct: 121 QVQIMVQKILKLNELPEPDDAADALAIAVTHINSLNSGCYSISDN 165


>gi|91227615|ref|ZP_01261919.1| Holliday junction resolvase [Vibrio alginolyticus 12G01]
 gi|91188508|gb|EAS74801.1| Holliday junction resolvase [Vibrio alginolyticus 12G01]
          Length = 120

 Score = 88.6 bits (218), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 44/98 (44%), Positives = 65/98 (66%)

Query: 58  DVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIG 117
           ++I  ++P+  A+EQVF+ K+A + LKLGQAR  AI++   A +PV EYA   IK+AV+G
Sbjct: 1   EIITQFQPDVFAIEQVFMAKNADSALKLGQARGSAIVAAVNAELPVFEYAARLIKQAVVG 60

Query: 118 VGHGDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHA 155
            G  DK Q+  M++ ++        DAADAL +A+CHA
Sbjct: 61  TGGADKAQVQHMVQQMLKLPAKPQADAADALGVAICHA 98


>gi|237712895|ref|ZP_04543376.1| holliday junction resolvase [Bacteroides sp. D1]
 gi|262409664|ref|ZP_06086204.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides sp.
           2_1_22]
 gi|294643216|ref|ZP_06721043.1| putative crossover junction endodeoxyribonuclease RuvC [Bacteroides
           ovatus SD CC 2a]
 gi|294807169|ref|ZP_06765985.1| putative crossover junction endodeoxyribonuclease RuvC [Bacteroides
           xylanisolvens SD CC 1b]
 gi|229447014|gb|EEO52805.1| holliday junction resolvase [Bacteroides sp. D1]
 gi|262352517|gb|EEZ01617.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides sp.
           2_1_22]
 gi|292641452|gb|EFF59643.1| putative crossover junction endodeoxyribonuclease RuvC [Bacteroides
           ovatus SD CC 2a]
 gi|294445620|gb|EFG14271.1| putative crossover junction endodeoxyribonuclease RuvC [Bacteroides
           xylanisolvens SD CC 1b]
          Length = 188

 Score = 88.6 bits (218), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 55/154 (35%), Positives = 88/154 (57%), Gaps = 9/154 (5%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG    G+G++ V G     ++ G I      +   +L  ++E +  +I+++ P+
Sbjct: 10  ILGIDPGTTIMGYGVLRVRGTKPEMIAMGIIDLRKFANHYLKLRHIHERVLSIIESYLPD 69

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALAR-IPVSEYAPNTIKKAVIGVGHGDKKQ 125
           E A+E  F  K+  + LKLG+A+ +A ++ AL+R IP++EYAP  IK A+ G G   K+Q
Sbjct: 70  ELAIEAPFFGKNVQSMLKLGRAQGVA-MAVALSRDIPITEYAPLKIKMAITGNGQASKEQ 128

Query: 126 IHMMLKMLMPESFFKGK-----DAADALAIAVCH 154
           +  ML+ ++   F K       DA D LA A CH
Sbjct: 129 VADMLQRML--RFSKDDMPTFMDATDGLAAAYCH 160


>gi|194333340|ref|YP_002015200.1| crossover junction endodeoxyribonuclease RuvC [Prosthecochloris
           aestuarii DSM 271]
 gi|238693318|sp|B4S5F6|RUVC_PROA2 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|194311158|gb|ACF45553.1| crossover junction endodeoxyribonuclease RuvC [Prosthecochloris
           aestuarii DSM 271]
          Length = 187

 Score = 88.2 bits (217), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 77/148 (52%), Gaps = 1/148 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           ++G+DPG   TG+G+V   G     V+ G I     QS+A R+  +Y+ L  +I  + P+
Sbjct: 3   VLGVDPGSVHTGYGVVLCNGQKFSLVACGLIRLSSNQSIADRIKIIYDELGAIIAEYNPQ 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+E  +VN++  + LKLGQ R   +       + + EYAP  +K  + G G   K+Q+
Sbjct: 63  RLALETAYVNRNPQSALKLGQVRGAIVALTMNKGLELHEYAPREVKYVLTGKGSAGKEQV 122

Query: 127 HMMLKMLMP-ESFFKGKDAADALAIAVC 153
             M +  +  +   K  D  DAL IA+C
Sbjct: 123 SYMARHFLNIQEPIKPYDVTDALGIALC 150


>gi|329961042|ref|ZP_08299321.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides fluxus
           YIT 12057]
 gi|328532328|gb|EGF59132.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides fluxus
           YIT 12057]
          Length = 192

 Score = 88.2 bits (217), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 54/152 (35%), Positives = 86/152 (56%), Gaps = 5/152 (3%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG    G+G++ V G     ++ G I          +L  ++E +  +I+++ P+
Sbjct: 10  ILGIDPGTTIMGYGVLRVTGVKPEMIAMGIIDLRKFGDHYLKLRHIHERVLSIIESYLPD 69

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALAR-IPVSEYAPNTIKKAVIGVGHGDKKQ 125
           E A+E  F  K+  + LKLG+A+ +A ++ AL+R IP++EYAP  IK A+ G G   K+Q
Sbjct: 70  ELAIEAPFFGKNVQSMLKLGRAQGVA-MAAALSRDIPITEYAPLKIKMAITGNGQASKEQ 128

Query: 126 IHMMLKMLM---PESFFKGKDAADALAIAVCH 154
           +  ML+ ++    E      DA D LA A CH
Sbjct: 129 VADMLQRMLHFPKEDMPVFMDATDGLAAAYCH 160


>gi|285808234|gb|ADC35768.1| crossover junction endodeoxyribonuclease RuvC [uncultured bacterium
           293]
          Length = 167

 Score = 88.2 bits (217), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 57/150 (38%), Positives = 84/150 (56%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+G+DPG R TG+G ++  G     +  G +    RQ L  RL  ++E L  +I   RP 
Sbjct: 3   ILGVDPGSRHTGYGAIESDGRRHHLLEKGVLSPAPRQDLPLRLHFIHERLAALIVRLRPA 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             AVE VF  + A + L LGQ R + +L+ A A + V  + P T+K  V G G  +K Q+
Sbjct: 63  AMAVEDVFHAQSARSALVLGQVRGVVLLAGAQAGLDVRSFPPATVKLQVTGHGQAEKAQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAY 156
            +M+  L+     +  DAADALA+A+CHA+
Sbjct: 123 ALMVSHLLALPAQEAGDAADALAVALCHAH 152


>gi|296390676|ref|ZP_06880151.1| Holliday junction resolvase [Pseudomonas aeruginosa PAb1]
          Length = 134

 Score = 87.8 bits (216), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 45/113 (39%), Positives = 72/113 (63%)

Query: 48  RLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYA 107
           RL  ++  + +VI+   P   ++EQVF+ ++A + LKLGQAR  AI++     + V+EY 
Sbjct: 4   RLHVVFRSVREVIRTHGPTALSIEQVFMARNADSALKLGQARGAAIVAAMEEGLSVAEYT 63

Query: 108 PNTIKKAVIGVGHGDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
            + +K+AV+G G  DK+Q+ MM+  L+  +     DA+DALAIA+CHA+   S
Sbjct: 64  ASQVKQAVVGTGGADKQQVQMMVMHLLKLTQKPQIDASDALAIALCHAHTQQS 116


>gi|225631047|ref|ZP_03787789.1| crossover junction endodeoxyribonuclease RuvC [Wolbachia
           endosymbiont of Muscidifurax uniraptor]
 gi|225591255|gb|EEH12395.1| crossover junction endodeoxyribonuclease RuvC [Wolbachia
           endosymbiont of Muscidifurax uniraptor]
          Length = 108

 Score = 87.4 bits (215), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 41/106 (38%), Positives = 68/106 (64%), Gaps = 1/106 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           ++IIG+DPG+ +TGW I+ +   +N+ F+  GTI +  +     RL  ++E L  VI  +
Sbjct: 2   VKIIGLDPGISKTGWAIISLNEKNNIEFLGGGTISTDGKLGTGERLHTIFEQLKKVISLY 61

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPN 109
            P EAAVE++FVNK+  ++L LG AR + IL+  + ++ ++EY  N
Sbjct: 62  SPNEAAVEKIFVNKNPKSSLTLGYARGVVILALKITKLTMNEYDAN 107


>gi|317488564|ref|ZP_07947109.1| crossover junction endodeoxyribonuclease RuvC [Eggerthella sp.
           1_3_56FAA]
 gi|316912306|gb|EFV33870.1| crossover junction endodeoxyribonuclease RuvC [Eggerthella sp.
           1_3_56FAA]
          Length = 192

 Score = 87.4 bits (215), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 56/157 (35%), Positives = 86/157 (54%), Gaps = 1/157 (0%)

Query: 2   RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           R    I+GIDPGL  TGWGIV+  G  L   + G + +     LA RL +++E +  VI 
Sbjct: 3   RTERTILGIDPGLANTGWGIVEQCGPRLACTAYGCVSTAKDLPLAQRLRKIHEQMAAVIA 62

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
            + P    +E V+   +  +    GQAR  A+++ A   + V E++P+ IK AV+G G  
Sbjct: 63  RFEPACVGIETVWFGVNVQSAFATGQARGAALVACAERDLEVLEFSPSQIKLAVVGTGSA 122

Query: 122 DKKQIHMMLKMLMP-ESFFKGKDAADALAIAVCHAYH 157
           +K Q+  M++ L+  E   +   AADALA A+C+  H
Sbjct: 123 EKDQVQYMVRQLLALEDVPRPDHAADALAAAICYTTH 159


>gi|257125464|ref|YP_003163578.1| Holliday junction resolvase [Leptotrichia buccalis C-1013-b]
 gi|257049403|gb|ACV38587.1| crossover junction endodeoxyribonuclease RuvC [Leptotrichia
           buccalis C-1013-b]
          Length = 189

 Score = 87.4 bits (215), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 73/130 (56%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPG    G+ +VD        +  G I +   + +  RL ++Y+G+ ++I+ W+
Sbjct: 1   MRILGIDPGTAIVGYAVVDYENGKYKPLDYGCIFTDKDEDMPVRLEKIYDGIENIIQLWK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P + A+E +F  K+    +K+GQAR +  L+    ++ +  Y P  +K  +   G  DKK
Sbjct: 61  PVDMAIEDLFFFKNQKTVIKVGQARGVITLAGQKNKLNLYSYTPLQVKMGIASYGRADKK 120

Query: 125 QIHMMLKMLM 134
           QI  M+K+++
Sbjct: 121 QIQEMVKLML 130


>gi|294811585|ref|ZP_06770228.1| Crossover junction endodeoxyribonuclease ruvC [Streptomyces
           clavuligerus ATCC 27064]
 gi|326440226|ref|ZP_08214960.1| Holliday junction resolvase [Streptomyces clavuligerus ATCC 27064]
 gi|294324184|gb|EFG05827.1| Crossover junction endodeoxyribonuclease ruvC [Streptomyces
           clavuligerus ATCC 27064]
          Length = 202

 Score = 87.4 bits (215), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 59/158 (37%), Positives = 90/158 (56%), Gaps = 2/158 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVD-VAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G G+V+  AG  L  +  G + S     LA RL  + +GL   +  +
Sbjct: 2   VRVLGVDPGLTRCGVGVVEGEAGRPLAMLGVGVVRSSPDADLAGRLVAIEQGLERWLDEY 61

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RPE  AVE+VF   +    +   QA A+A+L      IPV  + P+ +K AV G G  DK
Sbjct: 62  RPERVAVERVFSQHNVRTVMGTAQASAVAMLCAGRRGIPVVLHTPSEVKAAVTGTGRADK 121

Query: 124 KQI-HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
            Q+  M+ ++L  ++  +  DAADALA+A+CH + A +
Sbjct: 122 AQVGAMVTRLLRLDAPPRPADAADALALAICHIWRAPA 159


>gi|148927929|ref|ZP_01811335.1| crossover junction endodeoxyribonuclease RuvC [candidate division
           TM7 genomosp. GTL1]
 gi|147886718|gb|EDK72282.1| crossover junction endodeoxyribonuclease RuvC [candidate division
           TM7 genomosp. GTL1]
          Length = 158

 Score = 87.4 bits (215), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 42/128 (32%), Positives = 71/128 (55%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RIIGIDPG    G+G++D        V +G + + V Q L  RL ++Y  +  +I + R
Sbjct: 1   MRIIGIDPGTGILGFGVIDAEQGTTNLVDAGVVRTKVHQPLDERLVEIYGAIQSIIADTR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P   A+E++F  ++    + +  AR +A+L+   A + + EY P  IK+ + G G   KK
Sbjct: 61  PTIMAIERLFFAQNVTTAMSVAHARGVAMLAGKQADLAIHEYTPLQIKQTMTGYGRATKK 120

Query: 125 QIHMMLKM 132
           QI  M+++
Sbjct: 121 QIQEMVRL 128


>gi|333030433|ref|ZP_08458494.1| Crossover junction endodeoxyribonuclease ruvC [Bacteroides
           coprosuis DSM 18011]
 gi|332741030|gb|EGJ71512.1| Crossover junction endodeoxyribonuclease ruvC [Bacteroides
           coprosuis DSM 18011]
          Length = 189

 Score = 87.4 bits (215), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 56/154 (36%), Positives = 87/154 (56%), Gaps = 9/154 (5%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG    G+G++ V G      + G I     +    +L  ++E +  +I ++ P+
Sbjct: 10  ILGIDPGTTIMGYGVIRVNGTTPKMEAMGVIDMRKIKDHYLKLKHIHERVYGLIDSFLPD 69

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALAR-IPVSEYAPNTIKKAVIGVGHGDKKQ 125
           E A+E  F  K+  + LKLG+A+ IA ++ AL+R IP++EYAP  IK A+ G G   K+Q
Sbjct: 70  EVAIEAPFYGKNVQSMLKLGRAQGIA-MAVALSRDIPITEYAPLKIKMAITGNGKASKEQ 128

Query: 126 IHMMLKMLMPESFFKGK-----DAADALAIAVCH 154
           +  ML+ ++   F K +     DA D LA A CH
Sbjct: 129 VAEMLQRIL--RFDKSEMPVFLDATDGLAAAYCH 160


>gi|257790727|ref|YP_003181333.1| crossover junction endodeoxyribonuclease RuvC [Eggerthella lenta
           DSM 2243]
 gi|257474624|gb|ACV54944.1| crossover junction endodeoxyribonuclease RuvC [Eggerthella lenta
           DSM 2243]
          Length = 192

 Score = 87.4 bits (215), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 56/157 (35%), Positives = 86/157 (54%), Gaps = 1/157 (0%)

Query: 2   RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           R    I+GIDPGL  TGWGIV+  G  L   + G + +     LA RL +++E +  VI 
Sbjct: 3   RTERTILGIDPGLANTGWGIVEQRGPRLACTAYGCVSTAKDLPLAQRLRKIHEQMAAVIA 62

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
            + P    +E V+   +  +    GQAR  A+++ A   + V E++P+ IK AV+G G  
Sbjct: 63  RFEPACVGIETVWFGVNVQSAFATGQARGAALVACAERDLEVLEFSPSQIKLAVVGTGSA 122

Query: 122 DKKQIHMMLKMLMP-ESFFKGKDAADALAIAVCHAYH 157
           +K Q+  M++ L+  E   +   AADALA A+C+  H
Sbjct: 123 EKDQVQYMVRQLLALEDIPRPDHAADALAAAICYTTH 159


>gi|189485464|ref|YP_001956405.1| crossover junction endodeoxyribonuclease RuvC [uncultured Termite
           group 1 bacterium phylotype Rs-D17]
 gi|238058359|sp|B1H0B2|RUVC_UNCTG RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|170287423|dbj|BAG13944.1| crossover junction endodeoxyribonuclease RuvC [uncultured Termite
           group 1 bacterium phylotype Rs-D17]
          Length = 190

 Score = 87.4 bits (215), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 46/129 (35%), Positives = 73/129 (56%), Gaps = 1/129 (0%)

Query: 7   IIGIDPGLRRTGWGIVD-VAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           I+GIDPGL  TGWG+V+  + D +  +  G I +     L  RL  +   L  VI  ++P
Sbjct: 3   ILGIDPGLSLTGWGVVEAFSRDKVNPLQYGCIKTMPSVPLIQRLQTINTKLQSVIDKYKP 62

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
           E A++E++F  K   +   +GQ R   IL+ +L +IP+ EY P ++K A+ G G  DK Q
Sbjct: 63  EVASIEELFFFKATKSIAAVGQTRGAIILTASLNKIPLFEYNPKSVKTALTGYGSADKYQ 122

Query: 126 IHMMLKMLM 134
           +  ++K  +
Sbjct: 123 MQRIVKTFL 131


>gi|154498070|ref|ZP_02036448.1| hypothetical protein BACCAP_02051 [Bacteroides capillosus ATCC
           29799]
 gi|150273060|gb|EDN00217.1| hypothetical protein BACCAP_02051 [Bacteroides capillosus ATCC
           29799]
          Length = 186

 Score = 87.4 bits (215), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 74/128 (57%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG    G+G+++ A      +  G I +     L  RL Q+ + +  +++ ++P+
Sbjct: 10  ILGIDPGFAIVGFGVLEAAPGRQRLIRCGAITTPAGLPLPARLLQISDDMATLLRQFKPD 69

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             AVE++F N++    + + QAR + +     A +P+ EY+P+ +K+AV+G G  +K+Q+
Sbjct: 70  AMAVEELFFNQNVTTGISVAQARGVILTEAERACVPIFEYSPSQVKQAVVGYGKAEKRQV 129

Query: 127 HMMLKMLM 134
             M K L+
Sbjct: 130 MDMTKRLL 137


>gi|313892055|ref|ZP_07825653.1| crossover junction endodeoxyribonuclease RuvC [Dialister
           microaerophilus UPII 345-E]
 gi|313119507|gb|EFR42701.1| crossover junction endodeoxyribonuclease RuvC [Dialister
           microaerophilus UPII 345-E]
          Length = 164

 Score = 87.0 bits (214), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 76/130 (58%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R +GIDPG  R G+GIVD  G+++  V  G I +    SL+ RL  ++ G+ ++I+ ++
Sbjct: 1   MRALGIDPGTGRCGFGIVDKKGNSISAVDYGVIETTKEYSLSERLNIIFTGVNELIEIYK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+   +E ++ NK+    + + QAR +  L+    +I + E  P  +K+ V+G G  +KK
Sbjct: 61  PDVMGIETLYFNKNITTAISVAQARGVIQLAGFQKKIKIFECTPLQVKQQVVGYGRAEKK 120

Query: 125 QIHMMLKMLM 134
           Q+  M+  +M
Sbjct: 121 QVIEMIMQIM 130


>gi|78184289|ref|YP_376724.1| Holliday junction resolvase [Synechococcus sp. CC9902]
 gi|116071065|ref|ZP_01468334.1| Holliday junction resolvase RuvC [Synechococcus sp. BL107]
 gi|123770968|sp|Q3AYZ7|RUVC_SYNS9 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|78168583|gb|ABB25680.1| Holliday junction endonuclease RuvC [Synechococcus sp. CC9902]
 gi|116066470|gb|EAU72227.1| Holliday junction resolvase RuvC [Synechococcus sp. BL107]
          Length = 154

 Score = 86.7 bits (213), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 44/122 (36%), Positives = 72/122 (59%), Gaps = 1/122 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGL R G+G++D +G     +  G I +    S   R+  +   L  +I+ WR
Sbjct: 1   MRILGIDPGLARVGYGVIDTSGGQQRMLDCGIIRTEPGYSEGDRMVVIASDLRQLIRAWR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           PE AAVE+ F  + +  T+ + QAR + +++ A  ++PV E+ P  IK A+ G GH +K 
Sbjct: 61  PELAAVEKFFFYRSS-TTISVVQARGVVMMTLARFKVPVVEFPPMQIKLALAGFGHAEKD 119

Query: 125 QI 126
           ++
Sbjct: 120 EV 121


>gi|78188147|ref|YP_378485.1| crossover junction endodeoxyribonuclease RuvC [Chlorobium
           chlorochromatii CaD3]
 gi|90146448|sp|Q3AU83|RUVC_CHLCH RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|78170346|gb|ABB27442.1| Crossover junction endodeoxyribonuclease RuvC [Chlorobium
           chlorochromatii CaD3]
          Length = 192

 Score = 86.7 bits (213), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 50/148 (33%), Positives = 78/148 (52%), Gaps = 1/148 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           ++G+DPG  +TG+G+V     +   +++G I      S   R+  +   L  VI  ++PE
Sbjct: 3   VLGVDPGSLKTGYGVVQHHNGSFSVLAAGVIRLQAAWSHPERIGIICRELEQVIAEFQPE 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+E  F++ +  A LKLGQ R   I       +P+ EYAP  +K A+ G G   K+Q+
Sbjct: 63  RVALETAFLSHNVQAALKLGQVRGAVIGLVVRYALPIYEYAPREVKSAITGKGAATKEQV 122

Query: 127 HMML-KMLMPESFFKGKDAADALAIAVC 153
             M+ +ML   +  K  D  DAL IA+C
Sbjct: 123 AFMVSRMLSLHTVPKPHDVTDALGIALC 150


>gi|310658622|ref|YP_003936343.1| RuvABC resolvasome endonuclease subunit [Clostridium sticklandii
           DSM 519]
 gi|308825400|emb|CBH21438.1| component of RuvABC resolvasome, endonuclease [Clostridium
           sticklandii]
          Length = 163

 Score = 86.7 bits (213), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 72/128 (56%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           ++GIDPG+   G+GI++  G+    +  G I +    S   RL  ++ GL  +I ++  +
Sbjct: 3   VLGIDPGIAIVGYGIIEYIGNKFKVLDYGVIRTKSDLSYPERLELIFNGLNQIISSYNID 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E AVE++F  K+    + +  AR + +L   L + P+ EY P  +K+ V G G  DK+Q+
Sbjct: 63  EIAVEELFFCKNVKTAIDVAHARGVIVLCGQLNKKPIYEYTPLQVKQGVSGYGKADKRQV 122

Query: 127 HMMLKMLM 134
             M+K+L+
Sbjct: 123 QEMVKLLL 130


>gi|72162494|ref|YP_290151.1| Holliday junction resolvase [Thermobifida fusca YX]
 gi|110287675|sp|Q47N41|RUVC_THEFY RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|71916226|gb|AAZ56128.1| Holliday junction endonuclease RuvC [Thermobifida fusca YX]
          Length = 182

 Score = 86.7 bits (213), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 45/131 (34%), Positives = 76/131 (58%), Gaps = 1/131 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++GIDPGL R G G+VD A G  L  V++G + +   + L  RL  + +G+   + ++
Sbjct: 1   MRVLGIDPGLTRCGIGVVDGAVGAPLTMVAAGAVRTLADEELPARLLGIEKGIEQWLDDY 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +P+  AVE+VF   +    +   QA AIA++  A   +PVS + P+ +K A+ G G  DK
Sbjct: 61  QPDAVAVERVFAQHNVRTVMGTAQASAIAVVCAARRGLPVSLHTPSEVKAAITGSGRADK 120

Query: 124 KQIHMMLKMLM 134
            Q+  M+  ++
Sbjct: 121 AQVGTMVARIL 131


>gi|194477212|ref|YP_002049391.1| Holliday junction resolvase RuvC [Paulinella chromatophora]
 gi|171192219|gb|ACB43181.1| Holliday junction resolvase RuvC [Paulinella chromatophora]
          Length = 154

 Score = 86.7 bits (213), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 78/132 (59%), Gaps = 4/132 (3%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGL   G+G+VD+  +    +  G I +  +++   RL ++   +  ++K WR
Sbjct: 1   MRILGIDPGLASLGYGVVDIFNNQKQMLGCGVIQTDKKRAEGDRLVEISRDIRTIVKLWR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           PE A++EQ F  +    T+ + QAR +AIL+ A  +IP+ E+ P  +K  ++G G+  K 
Sbjct: 61  PELASIEQFFFYRSN-NTVSILQARGVAILTLAYLKIPIVEFTPMQVKLTLVGSGNAKKY 119

Query: 125 QIHMMLKMLMPE 136
           Q+   L+ +M E
Sbjct: 120 QV---LETVMKE 128


>gi|206900234|ref|YP_002251321.1| crossover junction endodeoxyribonuclease RuvC [Dictyoglomus
           thermophilum H-6-12]
 gi|226698752|sp|B5YFL3|RUVC_DICT6 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|206739337|gb|ACI18395.1| crossover junction endodeoxyribonuclease RuvC [Dictyoglomus
           thermophilum H-6-12]
          Length = 158

 Score = 86.3 bits (212), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 82/151 (54%), Gaps = 1/151 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           +IG DPG   TG+GI++   D +  +  G + +    S+  RL  L++ ++ ++  + P+
Sbjct: 3   VIGFDPGTAITGYGILNKEDDKIAVIEYGALTTPSNWSIGRRLNYLFDQVSSLLDLYNPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
              +E+VF NK+    + +GQA+ + IL+    +  VS   P  +K +V+G G   K Q+
Sbjct: 63  AVVMEEVFFNKNIKTAISIGQAQGVIILAAQQHQREVSILTPLEVKLSVVGYGRATKDQV 122

Query: 127 HMMLK-MLMPESFFKGKDAADALAIAVCHAY 156
             M+K +L  +   K  D ADALA+ + + Y
Sbjct: 123 QYMVKEVLKLKDIPKPDDVADALALCISYIY 153


>gi|104161982|emb|CAJ75691.1| crossover junction endodeoxyribonuclease [uncultured Thermotogales
           bacterium]
          Length = 168

 Score = 86.3 bits (212), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 77/134 (57%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M   +R++GIDPG    G+G++++    +  VS G I +   + +  RL ++++ L  ++
Sbjct: 1   MPACVRVLGIDPGFGTVGYGVLEMRASKIELVSYGAIRTEPDEPIPDRLLKIHDQLERLL 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
           +   P+E+AVE++F  ++    +++ +AR + +L+     +P+ EY P+ +K AV G G 
Sbjct: 61  QECSPDESAVEELFFFRNVTTAIQVSEARGVILLAMRRHEVPIFEYTPHQVKLAVTGYGR 120

Query: 121 GDKKQIHMMLKMLM 134
            +K Q+   LK  +
Sbjct: 121 AEKGQVQRTLKAFL 134


>gi|121535578|ref|ZP_01667385.1| crossover junction endodeoxyribonuclease RuvC [Thermosinus
           carboxydivorans Nor1]
 gi|121305818|gb|EAX46753.1| crossover junction endodeoxyribonuclease RuvC [Thermosinus
           carboxydivorans Nor1]
          Length = 165

 Score = 86.3 bits (212), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 45/127 (35%), Positives = 72/127 (56%)

Query: 8   IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEE 67
           +GIDPG    G+G V++ G  L  V  G + +  + S   RL  +++ L  +IK  RP+ 
Sbjct: 4   LGIDPGTAICGYGFVELRGSTLHAVDWGAVETSPKLSSTERLKIIFQDLDSLIKRQRPDI 63

Query: 68  AAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIH 127
             VEQ+F NK+    + +GQAR + +L+ AL  I V E  P  +K++V+G G   K+Q+ 
Sbjct: 64  IGVEQLFFNKNVTTAMTVGQARGVVLLAAALNNIKVLECTPLQVKQSVVGYGRATKEQVM 123

Query: 128 MMLKMLM 134
            M + L+
Sbjct: 124 YMTQRLL 130


>gi|227542218|ref|ZP_03972267.1| Holliday junction resolvase [Corynebacterium glucuronolyticum ATCC
           51866]
 gi|227182047|gb|EEI63019.1| Holliday junction resolvase [Corynebacterium glucuronolyticum ATCC
           51866]
          Length = 222

 Score = 86.3 bits (212), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 46/131 (35%), Positives = 74/131 (56%), Gaps = 1/131 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++GIDPGL R G  IV    G  +  V+ G   +  + S+  RL +LYE +TD I  +
Sbjct: 7   LRVLGIDPGLTRCGLSIVQAGKGRTVIPVAVGVARTPYKSSMGDRLKELYEAITDWIAEY 66

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +P+  A+E++F   +    L    A  + IL+ + A + V EY P+ +KKA+ G G  DK
Sbjct: 67  KPDVVAMERLFERGEVSTVLHTAHAVGVLILAASQANLDVHEYTPSQVKKAITGNGRADK 126

Query: 124 KQIHMMLKMLM 134
           KQ+  M+  ++
Sbjct: 127 KQMTAMVTRIL 137


>gi|88808985|ref|ZP_01124494.1| Holliday junction resolvase RuvC [Synechococcus sp. WH 7805]
 gi|88786927|gb|EAR18085.1| Holliday junction resolvase RuvC [Synechococcus sp. WH 7805]
          Length = 154

 Score = 86.3 bits (212), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 43/122 (35%), Positives = 72/122 (59%), Gaps = 1/122 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGL R G+G+++ AG     +  G I +   +    R+ ++   L  +I+ W 
Sbjct: 1   MRILGIDPGLARVGYGVIETAGGEQTMLDCGIIQTDSGRPEGERMVEIARDLRQLIRAWN 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           PE AAVE+ F  + +  T+ + QAR + I++ A   +P+ E+ P  IK+A+ G GH DK 
Sbjct: 61  PELAAVEKFFFYRSS-NTIAVVQARGVVIMTLARFGLPIVEFPPMQIKQALTGHGHADKD 119

Query: 125 QI 126
           ++
Sbjct: 120 EV 121


>gi|221632807|ref|YP_002522029.1| crossover junction endodeoxyribonuclease RuvC [Thermomicrobium
           roseum DSM 5159]
 gi|254767486|sp|B9KZ87|RUVC_THERP RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|221156400|gb|ACM05527.1| crossover junction endodeoxyribonuclease RuvC [Thermomicrobium
           roseum DSM 5159]
          Length = 163

 Score = 86.3 bits (212), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 74/125 (59%), Gaps = 1/125 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++G+DPG+   G+G+V+  G+ L  +S G + +     +  RL  L++ L  ++++W+
Sbjct: 1   MRVLGVDPGMALLGYGVVE-GGEPLRALSFGVVSTPAHLPVERRLVVLHDELAQLLEHWQ 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  A+EQ+F  ++    L +GQAR I +L      IPV EY P  +K+AV G G   K+
Sbjct: 60  PDVVALEQLFFARNVTTALAVGQARGIVLLLCGQRTIPVVEYTPAQVKQAVGGYGRARKR 119

Query: 125 QIHMM 129
           ++  M
Sbjct: 120 EMQEM 124


>gi|107100422|ref|ZP_01364340.1| hypothetical protein PaerPA_01001447 [Pseudomonas aeruginosa PACS2]
 gi|313105852|ref|ZP_07792115.1| Holliday junction resolvase RuvC [Pseudomonas aeruginosa 39016]
 gi|310878617|gb|EFQ37211.1| Holliday junction resolvase RuvC [Pseudomonas aeruginosa 39016]
          Length = 128

 Score = 86.3 bits (212), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 43/109 (39%), Positives = 70/109 (64%)

Query: 52  LYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTI 111
           ++  + +VI+   P   ++EQVF+ ++A + LKLGQAR  AI++     + V+EY  + +
Sbjct: 2   VFRSVREVIRTHGPTALSIEQVFMARNADSALKLGQARGAAIVAAMEEGLSVAEYTASQV 61

Query: 112 KKAVIGVGHGDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           K+AV+G G  DK+Q+ MM+  L+  +     DA+DALAIA+CHA+   S
Sbjct: 62  KQAVVGTGGADKQQVQMMVMHLLKLTQKPQIDASDALAIALCHAHTQQS 110


>gi|255692852|ref|ZP_05416527.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides
           finegoldii DSM 17565]
 gi|260621418|gb|EEX44289.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides
           finegoldii DSM 17565]
          Length = 188

 Score = 86.3 bits (212), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/154 (34%), Positives = 87/154 (56%), Gaps = 9/154 (5%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG    G+G++ + G     ++ G I      +   +L  ++E +  +I+++ P+
Sbjct: 10  ILGIDPGTTIMGYGVLRIKGTKPEMIAMGIIDLRKFANHYLKLRHIHERVLSIIESYLPD 69

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALAR-IPVSEYAPNTIKKAVIGVGHGDKKQ 125
           E A+E  F  K+  + LKLG+A+ +A ++ AL+R IP+ EYAP  IK A+ G G   ++Q
Sbjct: 70  ELAIEAPFFGKNVQSMLKLGRAQGVA-MAAALSRDIPIIEYAPLKIKMAITGNGQASEEQ 128

Query: 126 IHMMLKMLMPESFFKGK-----DAADALAIAVCH 154
           +  ML+ ++   F K       DA D LA A CH
Sbjct: 129 VADMLQRML--HFSKADMPTFMDATDGLAAAYCH 160


>gi|148239937|ref|YP_001225324.1| crossover junction endodeoxyribonuclease RuvC [Synechococcus sp. WH
           7803]
 gi|166233305|sp|A5GM62|RUVC_SYNPW RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|147848476|emb|CAK24027.1| Crossover junction endodeoxyribonuclease RuvC (Holliday juction
           resolvase ruvC) [Synechococcus sp. WH 7803]
          Length = 154

 Score = 85.9 bits (211), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 73/122 (59%), Gaps = 1/122 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGL R G+G+++ AG     +  G I +   +    R+ ++   L  +I+ W+
Sbjct: 1   MRILGIDPGLARVGYGVIETAGREQTMLDCGIIRTDSGRPEGERMVEIARDLRQLIRAWK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           PE AAVE+ F  + +  T+ + QAR + I++ +   +P+ E+ P  IK+A+ G GH DK 
Sbjct: 61  PELAAVEKFFFYRSS-NTIAVVQARGVVIMTLSRFGLPIVEFPPMQIKQALTGHGHADKD 119

Query: 125 QI 126
           ++
Sbjct: 120 EV 121


>gi|21220020|ref|NP_625799.1| Holliday junction resolvase [Streptomyces coelicolor A3(2)]
 gi|13431870|sp|Q9L289|RUVC_STRCO RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|6822216|emb|CAB70922.1| crossover junction endodeoxyribonuclease [Streptomyces coelicolor
           A3(2)]
          Length = 188

 Score = 85.9 bits (211), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/131 (35%), Positives = 72/131 (54%), Gaps = 1/131 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVD-VAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G G+V+ VAG  L  +  G + +     L  RL  + +G+   +   
Sbjct: 1   MRVLGVDPGLTRRGIGVVEGVAGRPLTMIGVGVVRTPADADLGHRLVAVEQGIEQWLDEH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RPE  AVE+VF   +    +   QA A+AIL  +   IPV+ + P+ +K AV G G  DK
Sbjct: 61  RPEFVAVERVFSQHNVRTVMGTAQASAVAILCASRRGIPVALHTPSEVKAAVTGSGRADK 120

Query: 124 KQIHMMLKMLM 134
            Q+  M+  L+
Sbjct: 121 AQVGAMVTRLL 131


>gi|256788880|ref|ZP_05527311.1| Holliday junction resolvase [Streptomyces lividans TK24]
 gi|289772768|ref|ZP_06532146.1| crossover junction endodeoxyribonuclease RuvC [Streptomyces
           lividans TK24]
 gi|289702967|gb|EFD70396.1| crossover junction endodeoxyribonuclease RuvC [Streptomyces
           lividans TK24]
          Length = 188

 Score = 85.9 bits (211), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/131 (35%), Positives = 72/131 (54%), Gaps = 1/131 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVD-VAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G G+V+ VAG  L  +  G + +     L  RL  + +G+   +   
Sbjct: 1   MRVLGVDPGLTRCGIGVVEGVAGRPLTMIGVGVVRTPADADLGHRLVAVEQGIEQWLDEH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RPE  AVE+VF   +    +   QA A+AIL  +   IPV+ + P+ +K AV G G  DK
Sbjct: 61  RPEFVAVERVFSQHNVRTVMGTAQASAVAILCASRRGIPVALHTPSEVKAAVTGSGRADK 120

Query: 124 KQIHMMLKMLM 134
            Q+  M+  L+
Sbjct: 121 AQVGAMVTRLL 131


>gi|320160778|ref|YP_004174002.1| crossover junction endodeoxyribonuclease RuvC [Anaerolinea
           thermophila UNI-1]
 gi|319994631|dbj|BAJ63402.1| crossover junction endodeoxyribonuclease RuvC [Anaerolinea
           thermophila UNI-1]
          Length = 167

 Score = 85.9 bits (211), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/153 (37%), Positives = 90/153 (58%), Gaps = 2/153 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGD-NLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           ++GIDPG   TG+G+V  + D +L  V  G I +        RL  LY  L ++I    P
Sbjct: 3   VLGIDPGTATTGYGLVRESQDGSLHLVGYGVIQTPAGLEEEKRLLLLYHKLNELILLHAP 62

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
               VE++F  ++    + +GQAR + +L+ A   IPV EY P  +K++V G G+ DK+Q
Sbjct: 63  NAGVVEKLFFRRNVTTAIGVGQARGVVLLALAQHGIPVWEYTPMEVKQSVSGYGNADKRQ 122

Query: 126 IHMMLKMLMP-ESFFKGKDAADALAIAVCHAYH 157
           + +M++ L+  E + K  DAADALA+A+CH +H
Sbjct: 123 VQLMVQTLLNLEEYPKPDDAADALAVAICHLHH 155


>gi|237750107|ref|ZP_04580587.1| holliday junction resolvase [Helicobacter bilis ATCC 43879]
 gi|229374294|gb|EEO24685.1| holliday junction resolvase [Helicobacter bilis ATCC 43879]
          Length = 158

 Score = 85.5 bits (210), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 82/150 (54%), Gaps = 2/150 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R  G+G++ V       + +G I    R+ L  ++ +  EG+  ++KN+  +
Sbjct: 3   ILGIDPGSRNCGYGVISVESGKASLLDAGIIKIETRE-LQSQIVEFIEGIDLILKNYEID 61

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E +F   +  + +KL Q R    L         +EY P  +KK++ G G  DKKQ+
Sbjct: 62  EVAMEDIFYAYNPKSVIKLAQFRGAISLKILQDLGNFAEYTPLQVKKSLTGNGKADKKQV 121

Query: 127 HMMLKMLMP-ESFFKGKDAADALAIAVCHA 155
             M+K+L+  +   K  D +DALA+A+ HA
Sbjct: 122 AYMVKVLLRLQCDIKPLDISDALAVALTHA 151


>gi|313679885|ref|YP_004057624.1| holliday junction endonuclease ruvc [Oceanithermus profundus DSM
           14977]
 gi|313152600|gb|ADR36451.1| Holliday junction endonuclease RuvC [Oceanithermus profundus DSM
           14977]
          Length = 163

 Score = 85.5 bits (210), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 51/160 (31%), Positives = 80/160 (50%), Gaps = 9/160 (5%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           ++GIDPG+   G G+V+  G    F+ +  + +      A R+  +YE +   I   RPE
Sbjct: 3   VLGIDPGISNLGLGVVEGDGARARFLHAELVRTRHGDPAAARVGAIYEAVAGAIAEHRPE 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             AVE  F  +      K+G A     L+   A + V +Y P  +K+A++G G  DK+Q+
Sbjct: 63  AVAVEAQFFYRQNELAYKVGWAMGAVFLAAGQAGLEVFQYGPMEVKRALVGTGRADKRQV 122

Query: 127 HMMLKMLM-----PESFFKGKDAADALAIAVCHAYHANSG 161
             M++ L+     P S      AADALA+A+ H  H  +G
Sbjct: 123 AFMVRALLGLKQTPSS----SHAADALAVALTHLAHLRTG 158


>gi|15643341|ref|NP_228385.1| Holliday junction resolvase [Thermotoga maritima MSB8]
 gi|6685947|sp|Q9WZ45|RUVC_THEMA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|4981092|gb|AAD35660.1|AE001732_5 crossover junction endodeoxyribonuclease [Thermotoga maritima MSB8]
          Length = 168

 Score = 85.5 bits (210), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/131 (36%), Positives = 77/131 (58%)

Query: 4   SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           S+RI+G+DPG    G GI++V+G+ +  V  GTI +        RL ++YE    V++ +
Sbjct: 3   SLRILGVDPGYGIVGIGIIEVSGNRISHVFHGTIETPKNLPAEKRLKRIYEEFLKVLERF 62

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P+E A+E++F  K+    + +G+AR +  L+ A   IPV EYAPN +K ++ G G   K
Sbjct: 63  SPDECAMEKLFFVKNVTTAIGVGEARGVLFLALAEKNIPVFEYAPNEVKVSLSGYGRASK 122

Query: 124 KQIHMMLKMLM 134
           KQI   +K  +
Sbjct: 123 KQIQENVKRFL 133


>gi|332653057|ref|ZP_08418802.1| crossover junction endodeoxyribonuclease RuvC [Ruminococcaceae
           bacterium D16]
 gi|332518203|gb|EGJ47806.1| crossover junction endodeoxyribonuclease RuvC [Ruminococcaceae
           bacterium D16]
          Length = 184

 Score = 85.5 bits (210), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/158 (32%), Positives = 89/158 (56%), Gaps = 1/158 (0%)

Query: 4   SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           S+ I+GIDPG+   G+G++         +  G I +     L+ RL Q+   + ++I+ +
Sbjct: 11  SMIILGIDPGVATIGFGVIKAQRGKNTLIQYGVITTPPGIPLSSRLLQISNDMEELIRTF 70

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P+E AVE++F +K+    + +   R + +L+     +PV EY P  +K+AV G G  DK
Sbjct: 71  HPDEMAVEELFFSKNITTGIAVAHGRGVILLAAEKLGVPVFEYTPMQVKQAVAGYGGADK 130

Query: 124 KQIHMMLKMLMP-ESFFKGKDAADALAIAVCHAYHANS 160
           +Q+ +M + L+  +   +  DAADALA+A+CH   A S
Sbjct: 131 RQVMLMTQRLLNMKQIPRPDDAADALALAICHGRSATS 168


>gi|320093779|ref|ZP_08025626.1| crossover junction endoribonuclease subunit C [Actinomyces sp. oral
           taxon 178 str. F0338]
 gi|319979280|gb|EFW10776.1| crossover junction endoribonuclease subunit C [Actinomyces sp. oral
           taxon 178 str. F0338]
          Length = 209

 Score = 85.5 bits (210), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/157 (33%), Positives = 82/157 (52%), Gaps = 2/157 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++GIDPGL R G G++DV        V  G   S    +  FRL  + + +  VI+  
Sbjct: 1   MRVMGIDPGLTRCGLGVIDVDPSRRATLVHVGVARSDKDLATHFRLTAIADAIDAVIERH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RPE  A+E+VF   +  +     Q    A+     A +P++ + P+ +K AV G G+  K
Sbjct: 61  RPEVVAIERVFAQDNLQSVTTTMQVMGAAMACVGRAGLPLAVHTPSEVKSAVSGNGNAGK 120

Query: 124 KQIHMML-KMLMPESFFKGKDAADALAIAVCHAYHAN 159
            Q+  M+ ++L      +  DAAD+LAIA+CHA+   
Sbjct: 121 AQVQTMVARILGLAEAPRPADAADSLAIAICHAWRGT 157


>gi|313158109|gb|EFR57514.1| crossover junction endodeoxyribonuclease RuvC [Alistipes sp. HGB5]
          Length = 196

 Score = 85.5 bits (210), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 51/151 (33%), Positives = 89/151 (58%), Gaps = 3/151 (1%)

Query: 8   IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEE 67
           +GIDPG    G+G++++ G ++  V  G I          +L  ++E +  +I  + P E
Sbjct: 1   MGIDPGTNYMGYGVLEIDGRSVRSVVLGDIDLHKLSDPYVKLRYIFERVGALIDQYAPRE 60

Query: 68  AAVEQVFVNKDAVATLKLGQARAIAILSPALAR-IPVSEYAPNTIKKAVIGVGHGDKKQI 126
            A+E  F  ++  + LKLG+A+ +A ++ AL+R +PVSEYAP  IK+++ G G   K+Q+
Sbjct: 61  VALESPFFGENVQSMLKLGRAQGVA-MAAALSRGLPVSEYAPMRIKQSITGRGSAAKEQV 119

Query: 127 HMML-KMLMPESFFKGKDAADALAIAVCHAY 156
             ++ ++L  E   K  DA D +A+A+CH +
Sbjct: 120 AAIVCRILSLEQPPKRLDATDGMAVALCHHF 150


>gi|291301299|ref|YP_003512577.1| crossover junction endodeoxyribonuclease RuvC [Stackebrandtia
           nassauensis DSM 44728]
 gi|290570519|gb|ADD43484.1| crossover junction endodeoxyribonuclease RuvC [Stackebrandtia
           nassauensis DSM 44728]
          Length = 176

 Score = 85.5 bits (210), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/167 (35%), Positives = 96/167 (57%), Gaps = 2/167 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLC-FVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G GIV+ A    C  V    + +    +L  RL +L   L  +++ +
Sbjct: 1   MRVLGVDPGLTRCGVGIVEGAPGRPCRLVGVHVVRTDPEAALPDRLLRLDTALAQLVERY 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +P+  AVE+VF   +  + +   QA A+A+L+ A A + V+ Y P+  K A+ G G  DK
Sbjct: 61  QPDAVAVERVFSQHNVASVIGTAQASAVAVLAGARAGVTVATYTPSEAKAAITGSGVADK 120

Query: 124 KQIHMML-KMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQD 169
           KQ+  M+ K+L  ++  K  DAADALA+A+CH +   +     A++D
Sbjct: 121 KQMTTMVTKLLRLDAPPKPADAADALALAICHVWRGGTQARFTAARD 167


>gi|239978433|ref|ZP_04700957.1| Holliday junction resolvase [Streptomyces albus J1074]
 gi|291450329|ref|ZP_06589719.1| holliday junction resolvase [Streptomyces albus J1074]
 gi|291353278|gb|EFE80180.1| holliday junction resolvase [Streptomyces albus J1074]
          Length = 190

 Score = 85.5 bits (210), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/158 (37%), Positives = 89/158 (56%), Gaps = 2/158 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVD-VAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G G+VD VAG  L  V  G I +        RL  +  G+   +   
Sbjct: 1   MRVLGVDPGLTRCGIGVVDGVAGRTLTMVGVGVIRTPAEAETPDRLVAVEAGIEAWLDEH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RPE  AVE+VF   +    +   QA A+A+L  A   +PV+ + P+ +K AV G G  +K
Sbjct: 61  RPERVAVERVFSQHNVRTVMGTAQASAVAMLCAARRGLPVALHTPSEVKAAVTGSGRAEK 120

Query: 124 KQI-HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
            Q+  M+ ++L  ++  K  DAADALA+A+CH + A +
Sbjct: 121 DQVGAMVTRLLRLDAPPKPADAADALALAICHIWRAPA 158


>gi|262037582|ref|ZP_06011038.1| crossover junction endodeoxyribonuclease RuvC [Leptotrichia
           goodfellowii F0264]
 gi|261748404|gb|EEY35787.1| crossover junction endodeoxyribonuclease RuvC [Leptotrichia
           goodfellowii F0264]
          Length = 189

 Score = 85.1 bits (209), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 71/130 (54%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPG    G+ ++D        +  G I +   + +  RL ++Y+GL ++IK W 
Sbjct: 1   MRILGIDPGTAIVGYSVIDFEKGKYKVLDYGCIYTDKDEDMPVRLEEIYDGLDNIIKLWE 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P + A+E+++  K+    +K+GQAR +  L      + +  Y P  +K  +   G  +KK
Sbjct: 61  PSDMAIEELYFFKNQKTIVKVGQARGVITLVGQKNNMNIYSYTPLQVKMGIASYGRAEKK 120

Query: 125 QIHMMLKMLM 134
           QI  M+K+++
Sbjct: 121 QIQEMVKIIL 130


>gi|261880788|ref|ZP_06007215.1| crossover junction endoribonuclease subunit C [Prevotella bergensis
           DSM 17361]
 gi|270332566|gb|EFA43352.1| crossover junction endoribonuclease subunit C [Prevotella bergensis
           DSM 17361]
          Length = 198

 Score = 85.1 bits (209), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 48/151 (31%), Positives = 81/151 (53%), Gaps = 3/151 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG    G+G++ V  +    ++ G +          +L +++E +  +I  + P+
Sbjct: 13  ILGIDPGTNIMGYGVLRVLDNKPEMMALGVVDMRKMDDTYLKLGKIFERVIGIIDEYHPD 72

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E  F +K+  + +KLG+A+ +AI +     I + EYAP  IK A+ G G   K+Q+
Sbjct: 73  EMAIEAPFYSKNVQSLIKLGRAQGVAISAAIHRDIFIHEYAPLKIKMAITGQGQASKEQV 132

Query: 127 HMMLKMLM---PESFFKGKDAADALAIAVCH 154
             ML+ L+    +   +  DA DAL  A CH
Sbjct: 133 ASMLQKLLHISKDEMPRFMDATDALGAAYCH 163


>gi|78213470|ref|YP_382249.1| Holliday junction endonuclease RuvC [Synechococcus sp. CC9605]
 gi|123729675|sp|Q3AI88|RUVC_SYNSC RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|78197929|gb|ABB35694.1| Holliday junction resolvase RuvC [Synechococcus sp. CC9605]
          Length = 154

 Score = 85.1 bits (209), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 44/122 (36%), Positives = 73/122 (59%), Gaps = 1/122 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGL R G+G++D+       +  G I +   +S   R+ ++   L  +I+ WR
Sbjct: 1   MRILGIDPGLARVGYGVIDIQDGCQRMLDCGIIQTNSDRSDGDRMVEIAGDLRQLIRIWR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           PE AAVE+ F  + +  T+ + QAR + +++ A  +IP+ E+ P  IK AV G GH +K 
Sbjct: 61  PELAAVEKFFFYRSS-NTINVVQARGVVVMTLARFKIPMVEFPPMQIKLAVAGFGHAEKD 119

Query: 125 QI 126
           ++
Sbjct: 120 EV 121


>gi|261837897|gb|ACX97663.1| Holliday junction endodeoxyribonuclease [Helicobacter pylori 51]
          Length = 157

 Score = 85.1 bits (209), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 52/153 (33%), Positives = 84/153 (54%), Gaps = 4/153 (2%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPG R+ G+ I+  A + L  +++G  ++     L  ++  L E L  ++  + 
Sbjct: 1   MRILGIDPGSRKCGYAIISHASNKLSLITAG-FINITTTRLQEQILDLIEALDCLLDRYE 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARI-PVSEYAPNTIKKAVIGVGHGDK 123
             E A+E +F   +  + +KL Q R  A+    L RI   SEY P  +KKA+ G G   K
Sbjct: 60  VNEVAIEDIFFGYNPKSVIKLAQFRG-ALSLKILERIGNFSEYTPLQVKKALTGNGKAAK 118

Query: 124 KQIHMMLKMLMP-ESFFKGKDAADALAIAVCHA 155
           +Q+  M+K L+   S  K  D +DA+A+A+ HA
Sbjct: 119 EQVAFMVKRLLNITSEIKPLDISDAIAVAITHA 151


>gi|15645496|ref|NP_207671.1| Holliday junction resolvase [Helicobacter pylori 26695]
 gi|108563285|ref|YP_627601.1| Holliday junction resolvase [Helicobacter pylori HPAG1]
 gi|254779156|ref|YP_003057261.1| Holliday junction resolvase [Helicobacter pylori B38]
 gi|3914941|sp|O25544|RUVC_HELPY RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|123073769|sp|Q1CSZ5|RUVC_HELPH RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|2314012|gb|AAD07925.1| Holliday junction endodeoxyribonuclease (ruvC) [Helicobacter pylori
           26695]
 gi|107837058|gb|ABF84927.1| Holliday junction endodeoxyribonuclease [Helicobacter pylori HPAG1]
 gi|254001067|emb|CAX29014.1| Crossover junction endodeoxyribonuclease RuvC (Holliday junction
           nuclease RuvC) (Holliday juction resolvase RuvC)
           [Helicobacter pylori B38]
          Length = 157

 Score = 85.1 bits (209), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 52/153 (33%), Positives = 84/153 (54%), Gaps = 4/153 (2%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPG R+ G+ I+  A + L  +++G  ++     L  ++  L E L  ++  + 
Sbjct: 1   MRILGIDPGSRKCGYAIISHASNKLSLITAG-FINITTTRLQEQILDLIEALDCLLDRYE 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARI-PVSEYAPNTIKKAVIGVGHGDK 123
             E A+E +F   +  + +KL Q R  A+    L RI   SEY P  +KKA+ G G   K
Sbjct: 60  VNEVAIEDIFFGYNPKSVIKLAQFRG-ALSLKILERIGNFSEYTPLQVKKALTGNGKAAK 118

Query: 124 KQIHMMLKMLMP-ESFFKGKDAADALAIAVCHA 155
           +Q+  M+K L+   S  K  D +DA+A+A+ HA
Sbjct: 119 EQVAFMVKRLLNITSEIKPLDISDAIAVAITHA 151


>gi|332095256|gb|EGJ00283.1| crossover junction endodeoxyribonuclease RuvC [Shigella dysenteriae
           155-74]
          Length = 136

 Score = 85.1 bits (209), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 38/90 (42%), Positives = 62/90 (68%)

Query: 45  LAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVS 104
           L FRL  +Y G+T++I  ++P+  A+EQVF+ K+A + LKLGQAR +AI++     +PV 
Sbjct: 4   LPFRLKLIYAGVTEIITQFQPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVF 63

Query: 105 EYAPNTIKKAVIGVGHGDKKQIHMMLKMLM 134
           EYA   +K+ V+G+G  +K Q+  M++ L+
Sbjct: 64  EYAARQVKQTVVGIGSAEKSQVQHMVRTLL 93


>gi|291296389|ref|YP_003507787.1| crossover junction endodeoxyribonuclease RuvC [Meiothermus ruber
           DSM 1279]
 gi|290471348|gb|ADD28767.1| crossover junction endodeoxyribonuclease RuvC [Meiothermus ruber
           DSM 1279]
          Length = 164

 Score = 85.1 bits (209), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 48/152 (31%), Positives = 79/152 (51%), Gaps = 1/152 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           ++GIDPG+   G G+V+ AG     + +  + +   ++   R+ +LY  +  V   +RP+
Sbjct: 3   VLGIDPGITNLGIGVVEQAGKQTRMLHAEVVKTTHGETAPERVGKLYRAVYQVAAAYRPQ 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             AVE+ F  +      K+G A     L      IPV  Y P  +K+A++G G  DK Q+
Sbjct: 63  AIAVEEQFFYRQNELAYKVGWAMGAVFLVADQLEIPVYGYGPPKVKQALVGTGQADKHQV 122

Query: 127 HMMLKMLMP-ESFFKGKDAADALAIAVCHAYH 157
             M++ L+  +S  K    ADALAIA+ H ++
Sbjct: 123 AYMVRALLGLKSLPKPTHLADALAIALTHCFY 154


>gi|118594337|ref|ZP_01551684.1| Crossover junction endodeoxyribonuclease RuvC [Methylophilales
           bacterium HTCC2181]
 gi|118440115|gb|EAV46742.1| Crossover junction endodeoxyribonuclease RuvC [Methylophilales
           bacterium HTCC2181]
          Length = 118

 Score = 84.7 bits (208), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 42/97 (43%), Positives = 61/97 (62%)

Query: 59  VIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGV 118
           +I  + PE  A+E+VFVN +  +TL LGQAR  AI +  +  +PV EY    IKK+V+G 
Sbjct: 1   MISQFNPECVAIEKVFVNTNPQSTLLLGQARGAAISAAVIHDLPVFEYTALQIKKSVVGQ 60

Query: 119 GHGDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHA 155
           GH  K+Q+ +M+K L+        D++DALA  +CHA
Sbjct: 61  GHAKKEQVQLMVKKLLGLPSVASTDSSDALACGLCHA 97


>gi|257063439|ref|YP_003143111.1| crossover junction endodeoxyribonuclease RuvC [Slackia
           heliotrinireducens DSM 20476]
 gi|256791092|gb|ACV21762.1| crossover junction endodeoxyribonuclease RuvC [Slackia
           heliotrinireducens DSM 20476]
          Length = 165

 Score = 84.7 bits (208), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 43/128 (33%), Positives = 70/128 (54%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPGL  TGWG++   G  L  V+ G I +     L  RL +L++ +  V+K + P 
Sbjct: 9   ILGIDPGLANTGWGVIRQRGPRLSCVAYGCISTSADMDLPSRLLKLHDQMELVVKRFEPT 68

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
              +E ++   +  A +   QAR   +++ A   + + E+ P  IK AV+G G+ DK Q+
Sbjct: 69  CLGIETIWFGANVTAGILTSQARGAVLVACASQGLSIGEFTPKQIKLAVVGEGNSDKMQV 128

Query: 127 HMMLKMLM 134
             M+K L+
Sbjct: 129 QYMVKQLL 136


>gi|260435322|ref|ZP_05789292.1| crossover junction endodeoxyribonuclease RuvC [Synechococcus sp. WH
           8109]
 gi|260413196|gb|EEX06492.1| crossover junction endodeoxyribonuclease RuvC [Synechococcus sp. WH
           8109]
          Length = 154

 Score = 84.7 bits (208), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 44/122 (36%), Positives = 73/122 (59%), Gaps = 1/122 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGL R G+G++D+       +  G I +   +S   R+ ++   L  +I+ WR
Sbjct: 1   MRILGIDPGLARVGYGVIDIQDGCQRMLDCGIIQTDSGRSDGDRMVEMAGDLRQLIRIWR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           PE AAVE+ F  + +  T+ + QAR + +++ A  +IP+ E+ P  IK AV G GH +K 
Sbjct: 61  PELAAVEKFFFYRSS-NTINVVQARGVVVMTLARFKIPMVEFPPMQIKLAVAGFGHAEKD 119

Query: 125 QI 126
           ++
Sbjct: 120 EV 121


>gi|46445653|ref|YP_007018.1| Holliday junction resolvase [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|81627840|sp|Q6MFA6|RUVC_PARUW RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|46399294|emb|CAF22743.1| probable Holliday junction endodeoxyribonuclease [Candidatus
           Protochlamydia amoebophila UWE25]
          Length = 168

 Score = 84.7 bits (208), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 54/160 (33%), Positives = 89/160 (55%), Gaps = 9/160 (5%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLY----EGL 56
           M   + I+G+DPG + TG+G++ + G     V  G    C+R    ++L + Y    +G+
Sbjct: 1   MSNQVIILGLDPGTKITGFGVIRIEGHQYVPVDYG----CIRPPSHYKLSERYLVICQGV 56

Query: 57  TDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVI 116
             +I   +P    VE  +V+K+  + +KLG AR + +++     IP+ EYAP+  K AV+
Sbjct: 57  EQLIDQHQPHAVVVETQYVSKNVQSAMKLGMARGVIMIAAKKRGIPIYEYAPSKAKLAVV 116

Query: 117 GVGHGDKKQIHMMLKMLMPESFFKGKD-AADALAIAVCHA 155
           G G   K Q+  M++ L+  S     + AADALA+A+CHA
Sbjct: 117 GTGRASKYQVQGMVQRLLNLSIPPTPEDAADALALAICHA 156


>gi|15611878|ref|NP_223529.1| Holliday junction resolvase [Helicobacter pylori J99]
 gi|6685959|sp|Q9ZKX3|RUVC_HELPJ RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|4155374|gb|AAD06385.1| CROSSOVER JUNCTION ENDODEOXYRIBONUCLEASE [Helicobacter pylori J99]
          Length = 157

 Score = 84.7 bits (208), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 52/153 (33%), Positives = 84/153 (54%), Gaps = 4/153 (2%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPG R+ G+ I+  A + L  +++G  ++     L  ++  L E L  ++  + 
Sbjct: 1   MRILGIDPGSRKCGYAIISHASNKLSLITAG-FINITTTRLQEQILDLIEALDCLLDRYE 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARI-PVSEYAPNTIKKAVIGVGHGDK 123
             E A+E +F   +  + +KL Q R  A+    L RI   SEY P  +KKA+ G G   K
Sbjct: 60  VNEVAIEDIFFGYNPKSVIKLAQFRG-ALSLKILERIGNFSEYTPLQVKKALTGNGKAAK 118

Query: 124 KQIHMMLKMLMP-ESFFKGKDAADALAIAVCHA 155
           +Q+  M+K L+   S  K  D +DA+A+A+ HA
Sbjct: 119 EQVAFMVKRLLNITSEIKPLDISDAIAVAITHA 151


>gi|307637566|gb|ADN80016.1| Crossover junction endo deoxyribonuclease [Helicobacter pylori 908]
 gi|325996157|gb|ADZ51562.1| Crossover junction endodeoxyribonuclease [Helicobacter pylori 2018]
 gi|325997753|gb|ADZ49961.1| Crossover junction endodeoxyribonuclease [Helicobacter pylori 2017]
          Length = 157

 Score = 84.7 bits (208), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 52/153 (33%), Positives = 84/153 (54%), Gaps = 4/153 (2%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPG R+ G+ I+  A + L  +++G  ++     L  ++  L E L  ++  + 
Sbjct: 1   MRILGIDPGSRKCGYAIISHASNKLSLITAG-FINITTTRLQEQILDLIEALDCLLDRYE 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARI-PVSEYAPNTIKKAVIGVGHGDK 123
             E A+E +F   +  + +KL Q R  A+    L RI   SEY P  +KKA+ G G   K
Sbjct: 60  VHEVAIEDIFFGYNPKSVIKLAQFRG-ALSLKILERIGNFSEYTPLQVKKALTGNGKAAK 118

Query: 124 KQIHMMLKMLMP-ESFFKGKDAADALAIAVCHA 155
           +Q+  M+K L+   S  K  D +DA+A+A+ HA
Sbjct: 119 EQVAFMVKRLLNITSEIKPLDISDAIAVAITHA 151


>gi|217033157|ref|ZP_03438615.1| hypothetical protein HPB128_183g4 [Helicobacter pylori B128]
 gi|298736584|ref|YP_003729110.1| crossover junction endodeoxyribonuclease RuvC [Helicobacter pylori
           B8]
 gi|216945117|gb|EEC23817.1| hypothetical protein HPB128_183g4 [Helicobacter pylori B128]
 gi|298355774|emb|CBI66646.1| crossover junction endodeoxyribonuclease RuvC [Helicobacter pylori
           B8]
          Length = 157

 Score = 84.7 bits (208), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 52/153 (33%), Positives = 84/153 (54%), Gaps = 4/153 (2%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPG R+ G+ I+  A + L  +++G  ++     L  ++  L E L  ++  + 
Sbjct: 1   MRILGIDPGSRKCGYAIISHASNKLSLITAG-FINITTTRLQEQILDLIEALDCLLDRYE 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARI-PVSEYAPNTIKKAVIGVGHGDK 123
             E A+E +F   +  + +KL Q R  A+    L RI   SEY P  +KKA+ G G   K
Sbjct: 60  VNEVAIEDIFFGYNPKSVIKLAQFRG-ALSLKILERIGNFSEYTPLQVKKALTGNGKAAK 118

Query: 124 KQIHMMLKMLMP-ESFFKGKDAADALAIAVCHA 155
           +Q+  M+K L+   S  K  D +DA+A+A+ HA
Sbjct: 119 EQVAFMVKRLLNITSEIKPLDISDAIAVAITHA 151


>gi|256371997|ref|YP_003109821.1| crossover junction endodeoxyribonuclease RuvC [Acidimicrobium
           ferrooxidans DSM 10331]
 gi|256008581|gb|ACU54148.1| crossover junction endodeoxyribonuclease RuvC [Acidimicrobium
           ferrooxidans DSM 10331]
          Length = 164

 Score = 84.7 bits (208), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 85/150 (56%), Gaps = 5/150 (3%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+G+DPGL R G+ +++  GD L  V +G + +  R   A RL ++ EG   V+ ++ 
Sbjct: 6   LRILGVDPGLARLGYAVIEATGDTLRLVGAGLVTTAARACRASRLHEIAEGFESVLDDFD 65

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEY--APNTIKKAVIGVGHGD 122
           P EAA+E++   ++  + L + +   + ++  AL R  V  Y  +PNT+K A    G   
Sbjct: 66  PTEAAIERLAFTRNVSSALPVSE--VVGVVRLALWRRGVVAYDISPNTVKNAATSGGSAA 123

Query: 123 KKQIH-MMLKMLMPESFFKGKDAADALAIA 151
           K+Q+   ++++L  +   +  D ADA+AIA
Sbjct: 124 KEQVQRTVVRLLGLDEPPQPPDVADAMAIA 153


>gi|208434786|ref|YP_002266452.1| Holliday junction endodeoxyribonuclease [Helicobacter pylori G27]
 gi|308184661|ref|YP_003928794.1| Holliday junction resolvase [Helicobacter pylori SJM180]
 gi|226698757|sp|B5Z7N7|RUVC_HELPG RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|208432715|gb|ACI27586.1| Holliday junction endodeoxyribonuclease [Helicobacter pylori G27]
 gi|308060581|gb|ADO02477.1| Holliday junction resolvase [Helicobacter pylori SJM180]
 gi|317012682|gb|ADU83290.1| Holliday junction resolvase [Helicobacter pylori Lithuania75]
          Length = 157

 Score = 84.7 bits (208), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 52/153 (33%), Positives = 84/153 (54%), Gaps = 4/153 (2%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPG R+ G+ I+  A + L  +++G  ++     L  ++  L E L  ++  + 
Sbjct: 1   MRILGIDPGSRKCGYAIISHASNKLSLITAG-FINITTTRLQEQILDLIEALDCLLDRYE 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARI-PVSEYAPNTIKKAVIGVGHGDK 123
             E A+E +F   +  + +KL Q R  A+    L RI   SEY P  +KKA+ G G   K
Sbjct: 60  VNEVAIEDIFFAYNPKSVIKLAQFRG-ALSLKILERIGNFSEYTPLQVKKALTGNGKAAK 118

Query: 124 KQIHMMLKMLMP-ESFFKGKDAADALAIAVCHA 155
           +Q+  M+K L+   S  K  D +DA+A+A+ HA
Sbjct: 119 EQVAFMVKRLLNITSEIKPLDISDAIAVAITHA 151


>gi|32490863|ref|NP_871117.1| hypothetical protein WGLp114 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|30173258|sp|Q8D387|RUVC_WIGBR RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|25166069|dbj|BAC24260.1| ruvC [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 161

 Score = 84.3 bits (207), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 54/154 (35%), Positives = 84/154 (54%), Gaps = 1/154 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           IIGIDPG   TG+GI+    + L  + SG+I    +     RL  +Y  + ++I  ++P+
Sbjct: 4   IIGIDPGSYVTGYGIIKSEKNTLKHIKSGSIF-LKKHDFKKRLKIIYICIKNIINKFKPK 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
              +EQ+F +K+  + LKLGQA   A L+     I + EYA   IKK ++G G   K Q+
Sbjct: 63  YFVIEQIFFSKNPSSVLKLGQASCAATLAAINLDILIFEYASKKIKKILVGDGKAKKLQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
              +  ++  S   G D +DALA+A+ H Y  N+
Sbjct: 123 KNKVCSILNLSKSIGIDTSDALAVAITHHYLINN 156


>gi|317051310|ref|YP_004112426.1| crossover junction endodeoxyribonuclease RuvC [Desulfurispirillum
           indicum S5]
 gi|316946394|gb|ADU65870.1| crossover junction endodeoxyribonuclease RuvC [Desulfurispirillum
           indicum S5]
          Length = 171

 Score = 84.3 bits (207), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 43/128 (33%), Positives = 73/128 (57%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           ++GIDPG R TG+GIV+  G+ L   + G I   V      R+  L +GL +V++   P 
Sbjct: 3   LLGIDPGTRITGYGIVEARGNQLLHRAHGAIRPPVDLPFPQRMLHLQQGLNEVLREHSPA 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
              +E+VF+ ++  + LKLG AR + +++     + V E +   IK++V G G   K+Q+
Sbjct: 63  HVCIEEVFLAQNPQSALKLGHARGVLMITCLSQGLDVVELSALQIKQSVTGYGKAPKEQV 122

Query: 127 HMMLKMLM 134
             M++ML+
Sbjct: 123 GRMVQMLL 130


>gi|283853682|ref|ZP_06370913.1| crossover junction endodeoxyribonuclease RuvC [Desulfovibrio sp.
           FW1012B]
 gi|283570923|gb|EFC18952.1| crossover junction endodeoxyribonuclease RuvC [Desulfovibrio sp.
           FW1012B]
          Length = 169

 Score = 84.3 bits (207), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 61/154 (39%), Positives = 91/154 (59%), Gaps = 4/154 (2%)

Query: 3   KSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
           + + ++G+DPG R TG+G+V      L  V++G + +        RL  +Y  + ++I  
Sbjct: 5   QEMMVLGLDPGSRVTGYGVVRERSGVLELVAAGVVRTGSENDFPTRLGVIYTAVAELIGR 64

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
             P EAAVE VFV+K+A   LKLGQAR  A+ + A+A +PV  Y P  IKK+++G G  +
Sbjct: 65  LAPIEAAVENVFVSKNAGTALKLGQARGAALAACAVAGLPVFSYEPTIIKKSLVGTGRAE 124

Query: 123 KKQIHMMLKMLMP--ESFFKGKDAADALAIAVCH 154
           K Q+  M+  ++   E+F    DA DALA AVCH
Sbjct: 125 KSQVAFMVGRVLSCRETFA--LDATDALAAAVCH 156


>gi|317011091|gb|ADU84838.1| Holliday junction resolvase [Helicobacter pylori SouthAfrica7]
          Length = 157

 Score = 84.3 bits (207), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 51/153 (33%), Positives = 84/153 (54%), Gaps = 4/153 (2%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPG ++ G+ I+  A + L  +++G  ++     L  ++  L E L  ++  + 
Sbjct: 1   MRILGIDPGSKKCGYAIISYASNKLSLITAG-FINITTTRLQEQILDLIEALDCLLDRYE 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARI-PVSEYAPNTIKKAVIGVGHGDK 123
             E A+E +F   +  + +KL Q R  A+    L RI   SEY P  +KKA+ G G   K
Sbjct: 60  VHEVAIEDIFFGYNPKSVIKLAQFRG-ALSLKILERIGNFSEYTPLQVKKALTGNGKAAK 118

Query: 124 KQIHMMLKMLMP-ESFFKGKDAADALAIAVCHA 155
           +Q+  M+K L+   S  K  D +DA+A+A+ HA
Sbjct: 119 EQVAFMVKRLLHITSEIKPLDISDAIAVAITHA 151


>gi|315503186|ref|YP_004082073.1| crossover junction endodeoxyribonuclease ruvc [Micromonospora sp.
           L5]
 gi|315409805|gb|ADU07922.1| crossover junction endodeoxyribonuclease RuvC [Micromonospora sp.
           L5]
          Length = 175

 Score = 84.3 bits (207), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 61/159 (38%), Positives = 90/159 (56%), Gaps = 4/159 (2%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLC-FVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G G+V+      C  V+   + +     LA RL  L   LTD++   
Sbjct: 1   MRVLGVDPGLTRCGVGVVEGVPGRPCTLVAYYVVYTDPEDDLALRLLHLDRSLTDLVAEH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RP+  AVE+VF   +    +   QA  +A+L+ A A +PV+ Y P+ +K AV G G  DK
Sbjct: 61  RPDAVAVERVFSQHNVRTVMGTAQASGVAVLAGARAGLPVTTYTPSEVKAAVTGSGQADK 120

Query: 124 KQIHMMLKML--MPESFFKGKDAADALAIAVCHAYHANS 160
           KQ+  M+  L  +PE   K  DAADALA+A+CH +   +
Sbjct: 121 KQMTTMVTRLLRLPEP-PKPADAADALALAICHVWRGGT 158


>gi|317177295|dbj|BAJ55084.1| Holliday junction resolvase [Helicobacter pylori F16]
          Length = 160

 Score = 84.3 bits (207), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 52/158 (32%), Positives = 85/158 (53%), Gaps = 4/158 (2%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPG R+ G+ I+    + L  +++G  ++     L  ++  L E L  ++  + 
Sbjct: 1   MRILGIDPGSRKCGYAIISHTSNKLSLITAG-FINITTTRLQEQILDLIEALDCLLDRYE 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARI-PVSEYAPNTIKKAVIGVGHGDK 123
             E A+E +F   +  + +KL Q R  A+    L RI   SEY P  +KKA+ G G   K
Sbjct: 60  VNEVAIEDIFFGYNPKSVIKLAQFRG-ALSLKILERIGNFSEYTPLQVKKALTGNGKAAK 118

Query: 124 KQIHMMLKMLMP-ESFFKGKDAADALAIAVCHAYHANS 160
           +Q+  M+K L+   S  K  D +DA+AIA+ HA   ++
Sbjct: 119 EQVAFMVKRLLNITSEIKPLDISDAIAIAITHAQRTHA 156


>gi|262197093|ref|YP_003268302.1| crossover junction endodeoxyribonuclease RuvC [Haliangium ochraceum
           DSM 14365]
 gi|262080440|gb|ACY16409.1| crossover junction endodeoxyribonuclease RuvC [Haliangium ochraceum
           DSM 14365]
          Length = 168

 Score = 84.3 bits (207), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 57/159 (35%), Positives = 88/159 (55%), Gaps = 3/159 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVA--GDNLC-FVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           +RI+G+DPG R  G+G+++V   G   C +V  G + +     +  RL ++   LTDV+ 
Sbjct: 1   MRILGVDPGSRMCGYGVIEVGAQGPGACAYVECGVLSATRGAPMEQRLGEIACWLTDVVT 60

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
             RP   AVE VF +++  + L L QAR   +    +A +PV  YAP  +KK V G G  
Sbjct: 61  ELRPLVVAVEDVFTHQNVRSALALAQARGTVLAVAGMAGLPVYSYAPAVVKKTVTGRGRA 120

Query: 122 DKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
            K+Q+ +M++ L+        DAADALA+A+ HA    +
Sbjct: 121 PKEQVALMVQALVGLRRVPEADAADALAVAITHAQRGPT 159


>gi|188527278|ref|YP_001909965.1| Holliday junction resolvase [Helicobacter pylori Shi470]
 gi|238691910|sp|B2USV3|RUVC_HELPS RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|188143518|gb|ACD47935.1| Holliday junction resolvase [Helicobacter pylori Shi470]
          Length = 157

 Score = 84.0 bits (206), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 52/153 (33%), Positives = 83/153 (54%), Gaps = 4/153 (2%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPG R+ G+ IV    + L  +++G  ++     L  ++  L E L  ++  + 
Sbjct: 1   MRILGIDPGSRKCGYAIVSHTSNKLSLITAG-FINITTTRLQEQILDLIEALDCLLDRYE 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARI-PVSEYAPNTIKKAVIGVGHGDK 123
             E A+E +F   +  + +KL Q R  A+    L RI   SEY P  +KKA+ G G   K
Sbjct: 60  VHEVAIEDIFFGYNPKSVIKLAQFRG-ALSLKILERIGNFSEYTPLQVKKALTGNGKAAK 118

Query: 124 KQIHMMLKMLMP-ESFFKGKDAADALAIAVCHA 155
           +Q+  M+K L+   S  K  D +DA+A+A+ HA
Sbjct: 119 EQVAFMVKRLLNITSEIKPLDISDAIAVAITHA 151


>gi|308062201|gb|ADO04089.1| Holliday junction resolvase [Helicobacter pylori Cuz20]
 gi|308063329|gb|ADO05216.1| Holliday junction resolvase [Helicobacter pylori Sat464]
          Length = 157

 Score = 84.0 bits (206), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 52/153 (33%), Positives = 83/153 (54%), Gaps = 4/153 (2%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPG R+ G+ IV    + L  +++G  ++     L  ++  L E L  ++  + 
Sbjct: 1   MRILGIDPGSRKCGYAIVSHTSNKLSLITAG-FINITTTRLQEQILDLIEALDCLLDRYE 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARI-PVSEYAPNTIKKAVIGVGHGDK 123
             E A+E +F   +  + +KL Q R  A+    L RI   SEY P  +KKA+ G G   K
Sbjct: 60  VNEVAIEDIFFGYNPKSVIKLAQFRG-ALSLKILERIGNFSEYTPLQVKKALTGNGKAAK 118

Query: 124 KQIHMMLKMLMP-ESFFKGKDAADALAIAVCHA 155
           +Q+  M+K L+   S  K  D +DA+A+A+ HA
Sbjct: 119 EQVAFMVKRLLNITSEIKPLDISDAIAVAITHA 151


>gi|148269488|ref|YP_001243948.1| Holliday junction resolvase [Thermotoga petrophila RKU-1]
 gi|170288162|ref|YP_001738400.1| crossover junction endodeoxyribonuclease RuvC [Thermotoga sp. RQ2]
 gi|281411794|ref|YP_003345873.1| crossover junction endodeoxyribonuclease RuvC [Thermotoga
           naphthophila RKU-10]
 gi|166233308|sp|A5IJJ9|RUVC_THEP1 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|238688812|sp|B1L8R9|RUVC_THESQ RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|147735032|gb|ABQ46372.1| Holliday junction endonuclease RuvC [Thermotoga petrophila RKU-1]
 gi|170175665|gb|ACB08717.1| crossover junction endodeoxyribonuclease RuvC [Thermotoga sp. RQ2]
 gi|281372897|gb|ADA66459.1| crossover junction endodeoxyribonuclease RuvC [Thermotoga
           naphthophila RKU-10]
          Length = 165

 Score = 84.0 bits (206), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 47/130 (36%), Positives = 77/130 (59%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+G+DPG    G GI++V+G+ +  V  GTI +        RL ++YE    V++ + 
Sbjct: 1   MRILGVDPGYGIVGIGIIEVSGNRISHVFHGTIETPKDLPAEKRLKRIYEEFLKVLERFS 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+E A+E++F  K+    + +G+AR + +L+ A   IPV EYAPN +K ++ G G   KK
Sbjct: 61  PDECAMEKLFFVKNVTTAIGVGEARGVLLLALAEKNIPVFEYAPNEVKVSLSGYGRASKK 120

Query: 125 QIHMMLKMLM 134
           QI   +K  +
Sbjct: 121 QIQENIKRFL 130


>gi|207093361|ref|ZP_03241148.1| Holliday junction resolvase [Helicobacter pylori HPKX_438_AG0C1]
 gi|207108708|ref|ZP_03242870.1| Holliday junction resolvase [Helicobacter pylori HPKX_438_CA4C1]
          Length = 157

 Score = 84.0 bits (206), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 51/153 (33%), Positives = 83/153 (54%), Gaps = 4/153 (2%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPG R+ G+ I+    + L  +++G  ++     L  ++  L E L  ++  + 
Sbjct: 1   MRILGIDPGSRKCGYAIISHTSNKLSLITAG-FINITTTRLQEQILDLIEALDCLLDRYE 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARI-PVSEYAPNTIKKAVIGVGHGDK 123
             E A+E +F   +  + +KL Q R  A+    L RI   SEY P  +KKA+ G G   K
Sbjct: 60  VNEVAIEDIFFAYNPKSVIKLAQFRG-ALSLKILERIGNFSEYTPLQVKKALTGNGKATK 118

Query: 124 KQIHMMLKMLMP-ESFFKGKDAADALAIAVCHA 155
           +Q+  M+K L+   S  K  D +DA+A+A+ HA
Sbjct: 119 EQVAFMVKRLLNITSEIKPLDISDAIAVAITHA 151


>gi|317178765|dbj|BAJ56553.1| Holliday junction resolvase [Helicobacter pylori F30]
          Length = 157

 Score = 84.0 bits (206), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 51/153 (33%), Positives = 83/153 (54%), Gaps = 4/153 (2%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPG R+ G+ I+    + L  +++G  ++     L  ++  L E L  ++  + 
Sbjct: 1   MRILGIDPGSRKCGYAIISHTSNKLSLITAG-FINITTTRLQEQILDLIEALDCLLDRYE 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARI-PVSEYAPNTIKKAVIGVGHGDK 123
             E A+E +F   +  + +KL Q R  A+    L RI   SEY P  +KKA+ G G   K
Sbjct: 60  VNEVAIEDIFFGHNPKSVIKLAQFRG-ALSLKILERIGNFSEYTPLQVKKALTGNGKAAK 118

Query: 124 KQIHMMLKMLMP-ESFFKGKDAADALAIAVCHA 155
           +Q+  M+K L+   S  K  D +DA+A+A+ HA
Sbjct: 119 EQVAFMVKRLLNITSEIKPLDISDAIAVAITHA 151


>gi|261855147|ref|YP_003262430.1| crossover junction endodeoxyribonuclease RuvC [Halothiobacillus
           neapolitanus c2]
 gi|261835616|gb|ACX95383.1| crossover junction endodeoxyribonuclease RuvC [Halothiobacillus
           neapolitanus c2]
          Length = 188

 Score = 84.0 bits (206), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 53/156 (33%), Positives = 83/156 (53%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPG    G  ++D    +   +   ++      S   RL  +Y  +  +I    
Sbjct: 4   LRVMGIDPGSVTMGVAVLDFERGSATQIHLQSVSLKPHGSFTARLGAIYAEVDRLIDTHA 63

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+E A+EQ+F+ +   ++LKL QAR +AI +     + V EY P  +K+AV+G G  DK 
Sbjct: 64  PDEFAIEQIFMYRSPESSLKLAQARGVAIAAAVGHGLTVHEYMPAVVKQAVVGTGRADKL 123

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           Q+  M+K L+  S     D ADA A+A+CH Y   S
Sbjct: 124 QVQHMIKRLLSLSESPPADGADAAAVALCHCYRRTS 159


>gi|317009115|gb|ADU79695.1| Holliday junction resolvase [Helicobacter pylori India7]
          Length = 157

 Score = 84.0 bits (206), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 51/153 (33%), Positives = 84/153 (54%), Gaps = 4/153 (2%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPG R+ G+ I+    + L  +++G  ++     L  ++  L E L  ++  + 
Sbjct: 1   MRILGIDPGSRKCGYAIISHTSNKLSLITAG-FINITTTRLQEQILDLIEALDCLLDRYE 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARI-PVSEYAPNTIKKAVIGVGHGDK 123
            +E A+E +F   +  + +KL Q R  A+    L RI   SEY P  +KKA+ G G   K
Sbjct: 60  VDEVAIEDIFFAYNPKSVIKLAQFRG-ALSLKILERIGNFSEYTPLQVKKALTGNGKAAK 118

Query: 124 KQIHMMLKMLMP-ESFFKGKDAADALAIAVCHA 155
           +Q+  M+K L+   S  K  D +DA+A+A+ HA
Sbjct: 119 EQVAFMVKRLLNITSEIKPLDISDAIAVAITHA 151


>gi|261839310|gb|ACX99075.1| Holliday junction resolvase [Helicobacter pylori 52]
          Length = 157

 Score = 83.6 bits (205), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 51/153 (33%), Positives = 83/153 (54%), Gaps = 4/153 (2%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPG R+ G+ I+    + L  +++G  ++     L  ++  L E L  ++  + 
Sbjct: 1   MRILGIDPGSRKCGYAIISHTSNKLSLITAG-FINITTTRLQEQILDLIEALDCLLDRYE 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARI-PVSEYAPNTIKKAVIGVGHGDK 123
             E A+E +F   +  + +KL Q R  A+    L RI   SEY P  +KKA+ G G   K
Sbjct: 60  VNEVAIEDIFFAYNPKSVIKLAQFRG-ALSLKILERIGNFSEYTPLQVKKALTGNGKATK 118

Query: 124 KQIHMMLKMLMP-ESFFKGKDAADALAIAVCHA 155
           +Q+  M+K L+   S  K  D +DA+A+A+ HA
Sbjct: 119 EQVAFMVKRLLNITSEIKPLDISDAIAVAITHA 151


>gi|187251559|ref|YP_001876041.1| crossover junction endodeoxyribonuclease RuvC [Elusimicrobium
           minutum Pei191]
 gi|186971719|gb|ACC98704.1| Crossover junction endodeoxyribonuclease RuvC [Elusimicrobium
           minutum Pei191]
          Length = 189

 Score = 83.6 bits (205), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 80/154 (51%), Gaps = 10/154 (6%)

Query: 7   IIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           ++GIDPGL RTGW I+      N+   + G I S    +L  RL  ++  +  + + ++P
Sbjct: 9   VLGIDPGLDRTGWAILTRDKNSNIRLTACGLIHSSKDSALPERLEYIFNEIGKLAEAYKP 68

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
              A+E++F  K A+   +  Q R + +L+  L  + ++ Y+P  +K  + G G   K Q
Sbjct: 69  NHVAMEEMFFLKRAITVSQTIQTRGVILLAAHLKGLNINSYSPKKVKSVICGSGTAGKAQ 128

Query: 126 IHMMLKMLM-----PESFFKGKDAADALAIAVCH 154
           I  M+++ +     PE      D ADA+AI +CH
Sbjct: 129 IQRMVQLTLKLTKKPEP----DDVADAIAIGICH 158


>gi|269120217|ref|YP_003308394.1| crossover junction endodeoxyribonuclease RuvC [Sebaldella
           termitidis ATCC 33386]
 gi|268614095|gb|ACZ08463.1| crossover junction endodeoxyribonuclease RuvC [Sebaldella
           termitidis ATCC 33386]
          Length = 192

 Score = 83.6 bits (205), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 71/128 (55%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           ++G+DPG    G+ +++        +  G + +   + +  RL ++Y+GL  +IK W+P+
Sbjct: 3   VLGVDPGTAIVGYSVIEYVKSKYRILDYGCVYTDKDEDMPVRLEKIYDGLDGIIKIWKPQ 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           + A+E++F  K+    +K+GQAR +  L      + +  Y P  +K  + G G  DKKQI
Sbjct: 63  DMAIEELFFFKNQKTVIKVGQARGVITLCGQKNCLDLYSYTPLQVKMGIAGYGRADKKQI 122

Query: 127 HMMLKMLM 134
             M+K+++
Sbjct: 123 QEMVKVIL 130


>gi|99034737|ref|ZP_01314667.1| hypothetical protein Wendoof_01000516 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 110

 Score = 83.6 bits (205), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 42/107 (39%), Positives = 66/107 (61%), Gaps = 1/107 (0%)

Query: 56  LTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAV 115
           + + I  + P EAAVE++ + K   ++L LG AR + IL+  + ++ ++EY  N +KK++
Sbjct: 3   IKESISLYSPNEAAVEKILLIKSK-SSLTLGYARGVVILALKITKLTMNEYDANYVKKSI 61

Query: 116 IGVGHGDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGY 162
            G GH DK QI  M+K ++     K   AADALA+A+CHAY   S +
Sbjct: 62  TGNGHADKDQIIFMVKQIVKNLSIKCHHAADALAVAICHAYTKGSCF 108


>gi|330836552|ref|YP_004411193.1| Crossover junction endodeoxyribonuclease ruvC [Spirochaeta
           coccoides DSM 17374]
 gi|329748455|gb|AEC01811.1| Crossover junction endodeoxyribonuclease ruvC [Spirochaeta
           coccoides DSM 17374]
          Length = 184

 Score = 83.6 bits (205), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 83/159 (52%), Gaps = 1/159 (0%)

Query: 3   KSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
            S+RI+GIDPGL +TGWG+VD+       VS G + +   Q L  R+  +   +  +   
Sbjct: 20  NSMRILGIDPGLAQTGWGVVDIIDQRYRPVSFGVVTTATSQDLGLRIHYIASNIGRLAAE 79

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
                 A+E VF  K+  + + + +     +   A   + V  ++P  IK AV G G  +
Sbjct: 80  HEVVMVAMEDVFFTKNISSAIPVAKVIGAIMHQLAGQGLDVKMFSPPQIKTAVTGYGSAE 139

Query: 123 KKQIHMMLKMLMP-ESFFKGKDAADALAIAVCHAYHANS 160
           K Q+  M+++++  +   K   +ADALA+AVC A ++++
Sbjct: 140 KHQVQEMMRLMLDLKEIPKPNHSADALAVAVCCASYSST 178


>gi|315586457|gb|ADU40838.1| crossover junction endoribonuclease subunit C [Helicobacter pylori
           35A]
          Length = 160

 Score = 83.6 bits (205), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 85/158 (53%), Gaps = 4/158 (2%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPG R+ G+ I+    + L  +++G  ++     L  ++  L E L  ++  + 
Sbjct: 1   MRILGIDPGSRKCGYAIISHTSNKLSLITAG-FINITTTRLQEQILDLIEALDCLLDRYE 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARI-PVSEYAPNTIKKAVIGVGHGDK 123
             E A+E +F   +  + +KL Q R  A+    L RI   SEY P  +KKA+ G G   K
Sbjct: 60  VNEVAIEDIFFGYNPKSVIKLAQFRG-ALSLKILERIGNFSEYTPLQVKKALTGNGKAAK 118

Query: 124 KQIHMMLKMLMP-ESFFKGKDAADALAIAVCHAYHANS 160
           +Q+  M+K L+   S  K  D +DA+A+A+ HA   ++
Sbjct: 119 EQVAFMVKRLLNITSEIKPLDISDAIAVAITHAQRTHA 156


>gi|332673319|gb|AEE70136.1| crossover junction endoribonuclease subunit C [Helicobacter pylori
           83]
          Length = 168

 Score = 83.6 bits (205), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 85/158 (53%), Gaps = 4/158 (2%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPG R+ G+ I+    + L  +++G  ++     L  ++  L E L  ++  + 
Sbjct: 9   MRILGIDPGSRKCGYAIISHTSNKLSLITAG-FINITTTRLQEQILDLIEALDCLLDRYE 67

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARI-PVSEYAPNTIKKAVIGVGHGDK 123
             E A+E +F   +  + +KL Q R  A+    L RI   SEY P  +KKA+ G G   K
Sbjct: 68  VNEVAIEDIFFGYNPKSVIKLAQFRG-ALSLKILERIGNFSEYTPLQVKKALTGNGKAAK 126

Query: 124 KQIHMMLKMLMP-ESFFKGKDAADALAIAVCHAYHANS 160
           +Q+  M+K L+   S  K  D +DA+A+A+ HA   ++
Sbjct: 127 EQVAFMVKRLLNITSEIKPLDISDAIAVAITHAQRTHA 164


>gi|317180639|dbj|BAJ58425.1| Holliday junction resolvase [Helicobacter pylori F32]
 gi|317182185|dbj|BAJ59969.1| Holliday junction resolvase [Helicobacter pylori F57]
          Length = 157

 Score = 83.6 bits (205), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 51/153 (33%), Positives = 83/153 (54%), Gaps = 4/153 (2%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPG R+ G+ I+    + L  +++G  ++     L  ++  L E L  ++  + 
Sbjct: 1   MRILGIDPGSRKCGYAIISHTSNKLSLITAG-FINITTTRLQEQILDLIEALDCLLDRYE 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARI-PVSEYAPNTIKKAVIGVGHGDK 123
             E A+E +F   +  + +KL Q R  A+    L RI   SEY P  +KKA+ G G   K
Sbjct: 60  VHEVAIEDIFFGYNPKSVIKLAQFRG-ALSLKILERIGNFSEYTPLQVKKALTGNGKAAK 118

Query: 124 KQIHMMLKMLMP-ESFFKGKDAADALAIAVCHA 155
           +Q+  M+K L+   S  K  D +DA+A+A+ HA
Sbjct: 119 EQVAFMVKRLLNITSEIKPLDISDAIAVAITHA 151


>gi|196228704|ref|ZP_03127570.1| crossover junction endodeoxyribonuclease RuvC [Chthoniobacter
           flavus Ellin428]
 gi|196226985|gb|EDY21489.1| crossover junction endodeoxyribonuclease RuvC [Chthoniobacter
           flavus Ellin428]
          Length = 167

 Score = 83.6 bits (205), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 56/156 (35%), Positives = 89/156 (57%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++ IDP LR TG+ I+D  G+ +  V+ G + +      +  L  ++E +TD+I+  R
Sbjct: 1   MRVLSIDPSLRGTGFAILDGEGNKIRAVTYGVVKNAPALLPSGCLVAIHERITDLIREHR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           PE AA E +   +     + LG AR  A+L+ A   +P+ EYAP  +K++V+G G  DK 
Sbjct: 61  PECAAFEGIIYVQSHRVAITLGAARGAALLAAASLGLPIYEYAPRRVKQSVVGRGGADKG 120

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           Q+  M++ L+  +     DAADALAI + H   A S
Sbjct: 121 QVGFMVRALLGLTETPSPDAADALAIGLTHLQTAAS 156


>gi|297380078|gb|ADI34965.1| crossover junction endodeoxyribonuclease RuvC [Helicobacter pylori
           v225d]
          Length = 157

 Score = 83.6 bits (205), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 51/153 (33%), Positives = 83/153 (54%), Gaps = 4/153 (2%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPG R+ G+ I+    + L  +++G  ++     L  ++  L E L  ++  + 
Sbjct: 1   MRILGIDPGSRKCGYAIISHTSNKLSLITAG-FINITTTRLQEQILDLIEALDCLLDRYE 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARI-PVSEYAPNTIKKAVIGVGHGDK 123
             E A+E +F   +  + +KL Q R  A+    L RI   SEY P  +KKA+ G G   K
Sbjct: 60  VNEVAIEDIFFGYNPKSVIKLAQFRG-ALSLKILERIGNFSEYTPLQVKKALTGNGKAAK 118

Query: 124 KQIHMMLKMLMP-ESFFKGKDAADALAIAVCHA 155
           +Q+  M+K L+   S  K  D +DA+A+A+ HA
Sbjct: 119 EQVAFMVKRLLNITSEIKPLDISDAIAVAITHA 151


>gi|210135070|ref|YP_002301509.1| Holliday junction resolvase [Helicobacter pylori P12]
 gi|226698756|sp|B6JMA1|RUVC_HELP2 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|210133038|gb|ACJ08029.1| holliday junction endodeoxyribonuclease [Helicobacter pylori P12]
          Length = 157

 Score = 83.2 bits (204), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/153 (33%), Positives = 83/153 (54%), Gaps = 4/153 (2%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPG R+ G+ I+    + L  +++G  ++     L  ++  L E L  ++  + 
Sbjct: 1   MRILGIDPGSRKCGYAIISHTSNKLSLITAG-FINITTTRLQEQILDLIEALDCLLDRYE 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARI-PVSEYAPNTIKKAVIGVGHGDK 123
             E A+E +F   +  + +KL Q R  A+    L RI   SEY P  +KKA+ G G   K
Sbjct: 60  VHEVAIEDIFFAYNPKSVIKLAQFRG-ALSLKILERIGNFSEYTPLQVKKALTGNGKAAK 118

Query: 124 KQIHMMLKMLMP-ESFFKGKDAADALAIAVCHA 155
           +Q+  M+K L+   S  K  D +DA+A+A+ HA
Sbjct: 119 EQVAFMVKRLLNITSEIKPLDISDAIAVAITHA 151


>gi|317014285|gb|ADU81721.1| Holliday junction resolvase [Helicobacter pylori Gambia94/24]
          Length = 157

 Score = 83.2 bits (204), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/153 (33%), Positives = 83/153 (54%), Gaps = 4/153 (2%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPG R+ G+ I+    + L  +++G  ++     L  ++  L E L  ++  + 
Sbjct: 1   MRILGIDPGSRKCGYAIISHVSNKLSLITAG-FINITTTRLQEQILDLIEALDCLLDRYE 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARI-PVSEYAPNTIKKAVIGVGHGDK 123
             E A+E +F   +  + +KL Q R  A+    L RI   SEY P  +KKA+ G G   K
Sbjct: 60  VHEVAIEDIFFGYNPKSVIKLAQFRG-ALSLKILERIGNFSEYTPLQVKKALTGNGKAAK 118

Query: 124 KQIHMMLKMLMP-ESFFKGKDAADALAIAVCHA 155
           +Q+  M+K L+   S  K  D +DA+A+A+ HA
Sbjct: 119 EQVAFMVKRLLNITSEIKPLDISDAIAVAITHA 151


>gi|167754456|ref|ZP_02426583.1| hypothetical protein ALIPUT_02752 [Alistipes putredinis DSM 17216]
 gi|167659081|gb|EDS03211.1| hypothetical protein ALIPUT_02752 [Alistipes putredinis DSM 17216]
          Length = 211

 Score = 83.2 bits (204), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 88/155 (56%), Gaps = 3/155 (1%)

Query: 8   IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEE 67
           +GIDPG    G+G+++V G  +  V  G I          +L  ++E +  ++  +RP E
Sbjct: 1   MGIDPGTNYMGYGVLEVCGREVRSVVLGDIDLHRMNDPYEKLRYIFERVGALVDEYRPRE 60

Query: 68  AAVEQVFVNKDAVATLKLGQARAIAILSPALAR-IPVSEYAPNTIKKAVIGVGHGDKKQI 126
            A+E  F  ++  + LKLG+A+ +A+ + AL+R + V EYAP  IK+ + G G   K+Q+
Sbjct: 61  VALESPFFGENVQSMLKLGRAQGVAMAA-ALSRGLQVFEYAPTRIKQCITGRGSAPKEQV 119

Query: 127 HMML-KMLMPESFFKGKDAADALAIAVCHAYHANS 160
             ++  ML  E   +  DA D +A+A+CH + +++
Sbjct: 120 AALVSSMLTIERPPRRLDATDGMAVALCHHFMSSN 154


>gi|323359951|ref|YP_004226347.1| holliday junction resolvasome, endonuclease subunit [Microbacterium
           testaceum StLB037]
 gi|323276322|dbj|BAJ76467.1| holliday junction resolvasome, endonuclease subunit [Microbacterium
           testaceum StLB037]
          Length = 203

 Score = 83.2 bits (204), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/156 (36%), Positives = 89/156 (57%), Gaps = 2/156 (1%)

Query: 3   KSIRIIGIDPGLRRTGWGIVDVAGDNLC-FVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           +S+R++GIDPGL R G G+VDV+ +     V  G   S     +  RL  +  G+  V++
Sbjct: 6   RSLRVLGIDPGLTRCGIGVVDVSPNRTASLVHVGVARSAPSDPIEKRLAAIAAGIRSVLR 65

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
              P+  AVE+VF   +  + +   QA  IA+L  A   IP + + P+ +K A+ G G  
Sbjct: 66  EHDPQVVAVERVFAQNNRHSVMGTAQASGIALLLAAEHGIPAATHTPSEVKAAITGYGSA 125

Query: 122 DKKQIHMML-KMLMPESFFKGKDAADALAIAVCHAY 156
           DK Q+  M+ ++L  ++  +  DAADALAIA+CHA+
Sbjct: 126 DKLQVQTMVARVLRLDALPQPADAADALAIALCHAW 161


>gi|317970460|ref|ZP_07971850.1| Holliday junction resolvase [Synechococcus sp. CB0205]
          Length = 157

 Score = 83.2 bits (204), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 46/125 (36%), Positives = 74/125 (59%), Gaps = 4/125 (3%)

Query: 5   IRIIGIDPGLRRTGWGIVDV---AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           +RI+GIDPGL R G+G++DV    G     +  G I +   +S   R+ ++ + L  +I+
Sbjct: 1   MRILGIDPGLARVGYGVIDVEEGPGGAQTMLDCGIIRTDPGRSDGERMVEIAKDLRVLIR 60

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
           NW+P+ AAVE+ F  + +  T+ + QAR + +++ A   IPV E+ P  IK A+ G GH 
Sbjct: 61  NWKPDLAAVEKFFFYRSS-TTISVVQARGVLMMTLARFSIPVVEFPPMQIKLALAGHGHA 119

Query: 122 DKKQI 126
           DK  +
Sbjct: 120 DKDDV 124


>gi|255323603|ref|ZP_05364733.1| crossover junction endodeoxyribonuclease RuvC [Campylobacter showae
           RM3277]
 gi|255299317|gb|EET78604.1| crossover junction endodeoxyribonuclease RuvC [Campylobacter showae
           RM3277]
          Length = 157

 Score = 83.2 bits (204), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/152 (32%), Positives = 78/152 (51%), Gaps = 2/152 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++I+GIDPG R  G+ IV+        + +G ++     SL +++ +L EGL  + KN +
Sbjct: 1   MKILGIDPGSRNCGYAIVEKTPVKTVLIEAG-LIKIKPNSLQYQITELCEGLDLIFKNHK 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
            +E A+E +F   +    LKL Q R    L         +EY P  +KK V G    DK+
Sbjct: 60  FDEVAIEDIFFAYNPKTVLKLAQFRGALSLKILQLHGDFAEYTPLQVKKTVTGKAKADKE 119

Query: 125 QIHMMLKMLMP-ESFFKGKDAADALAIAVCHA 155
           Q+  M+K ++      K  D  DA+AIA+ HA
Sbjct: 120 QVAFMVKKILGITKEIKPLDITDAIAIALTHA 151


>gi|217967995|ref|YP_002353501.1| crossover junction endodeoxyribonuclease RuvC [Dictyoglomus
           turgidum DSM 6724]
 gi|226725468|sp|B8E2P3|RUVC_DICTD RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|217337094|gb|ACK42887.1| crossover junction endodeoxyribonuclease RuvC [Dictyoglomus
           turgidum DSM 6724]
          Length = 158

 Score = 83.2 bits (204), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 80/151 (52%), Gaps = 1/151 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           +IG DPG   TG+GI++   D +  +  G + +     +  RL  L++ ++ ++  + P+
Sbjct: 3   VIGFDPGTAITGYGILNKGEDGISIIEYGALTTPSGWGIGRRLNYLFDQVSSLLDLYNPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
              +E +F NK+    + +GQA+ + IL+    +  +S   P  +K +V+G G   K QI
Sbjct: 63  VVVMENIFFNKNIKTAINIGQAQGVIILAAEQHQKEISILTPLEVKLSVVGYGRATKNQI 122

Query: 127 HMMLK-MLMPESFFKGKDAADALAIAVCHAY 156
             M+K +L  +   K  D ADALA+ + + Y
Sbjct: 123 QYMVKEILKLKDIPKPDDVADALALCISYIY 153


>gi|217034487|ref|ZP_03439898.1| hypothetical protein HP9810_873g3 [Helicobacter pylori 98-10]
 gi|216943028|gb|EEC22507.1| hypothetical protein HP9810_873g3 [Helicobacter pylori 98-10]
          Length = 157

 Score = 83.2 bits (204), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/153 (32%), Positives = 83/153 (54%), Gaps = 4/153 (2%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPG R+ G+ I+    + L  +++G  ++     L  ++  L E L  ++  + 
Sbjct: 1   MRILGIDPGSRKCGYAIISHTSNKLSLITAG-FINITTTRLQEQILDLIEALDCLLDRYE 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARI-PVSEYAPNTIKKAVIGVGHGDK 123
             E A+E +F   +  + +KL Q R  A+    L R+   SEY P  +KKA+ G G   K
Sbjct: 60  VNEVAIEDIFFGYNPKSVIKLAQFRG-ALSLKILERVGNFSEYTPLQVKKALTGNGKAAK 118

Query: 124 KQIHMMLKMLMP-ESFFKGKDAADALAIAVCHA 155
           +Q+  M+K L+   S  K  D +DA+A+A+ HA
Sbjct: 119 EQVAFMVKRLLNITSEIKPLDISDAIAVAITHA 151


>gi|315604285|ref|ZP_07879351.1| crossover junction endoribonuclease subunit C [Actinomyces sp. oral
           taxon 180 str. F0310]
 gi|315313991|gb|EFU62042.1| crossover junction endoribonuclease subunit C [Actinomyces sp. oral
           taxon 180 str. F0310]
          Length = 209

 Score = 83.2 bits (204), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/157 (33%), Positives = 82/157 (52%), Gaps = 2/157 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++GIDPGL R G G++DV        V  G   S    +  FRL  + + +  VI+ +
Sbjct: 1   MRVMGIDPGLTRCGLGVIDVDPSRRATLVYVGVARSDKDLATHFRLRTIADAIDGVIERY 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            PE  A+E+VF   +  +     Q    A+     A +P++ + P+ +K AV G G+ DK
Sbjct: 61  APEVVAIERVFAQDNLQSVTTTMQVMGAAMTCVGRAGLPMAVHTPSEVKSAVSGNGNADK 120

Query: 124 KQIHMML-KMLMPESFFKGKDAADALAIAVCHAYHAN 159
            Q+  M+ ++L      K  DAAD+LAIA+ HA+   
Sbjct: 121 AQVQTMVARILGLVKAPKPADAADSLAIAITHAWRGT 157


>gi|257068560|ref|YP_003154815.1| Holliday junction endonuclease RuvC [Brachybacterium faecium DSM
           4810]
 gi|256559378|gb|ACU85225.1| Holliday junction endonuclease RuvC [Brachybacterium faecium DSM
           4810]
          Length = 197

 Score = 83.2 bits (204), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/132 (35%), Positives = 70/132 (53%), Gaps = 1/132 (0%)

Query: 4   SIRIIGIDPGLRRTGWGIVD-VAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
           ++R++G+DPGL R G G+VD + G     V +G + S     L  RL  +  GL   ++ 
Sbjct: 3   TMRVLGVDPGLTRCGIGVVDALGGRRARLVHAGVLRSESDAPLDQRLLTIARGLRAALEE 62

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
           + P+  AVE+VF   +    +   Q   IA+L  A   IP + + P+ +K AV G G  D
Sbjct: 63  FGPDAVAVERVFSQNNISTVMGTAQVSGIALLEAAERGIPAAMHTPSEVKAAVTGSGRAD 122

Query: 123 KKQIHMMLKMLM 134
           KKQI  ML  L+
Sbjct: 123 KKQIQTMLVKLL 134


>gi|124022603|ref|YP_001016910.1| Holliday junction resolvase [Prochlorococcus marinus str. MIT 9303]
 gi|166233282|sp|A2C835|RUVC_PROM3 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|123962889|gb|ABM77645.1| Crossover junction endodeoxyribonuclease RuvC [Prochlorococcus
           marinus str. MIT 9303]
          Length = 154

 Score = 83.2 bits (204), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 41/122 (33%), Positives = 71/122 (58%), Gaps = 1/122 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGL R G+G++D +      +  G I +        R+ ++   L  +I+ W+
Sbjct: 1   MRILGIDPGLARVGYGVIDTSNGQQQMLDCGIIRTNPGIDDGVRMVEIASDLRQLIRRWK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ AAVE+ F  + +  T+ + QAR + I++ A  R+P+ E+ P  IK A+ G GH +K 
Sbjct: 61  PQLAAVEKFFFYRSS-TTISVVQARGVIIMTLARFRVPMVEFPPMQIKLALAGSGHAEKD 119

Query: 125 QI 126
           ++
Sbjct: 120 EV 121


>gi|126663029|ref|ZP_01734027.1| Holliday junction resolvase [Flavobacteria bacterium BAL38]
 gi|126624687|gb|EAZ95377.1| Holliday junction resolvase [Flavobacteria bacterium BAL38]
          Length = 168

 Score = 82.8 bits (203), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 46/145 (31%), Positives = 80/145 (55%), Gaps = 3/145 (2%)

Query: 18  GWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNK 77
           G+G++ V    + F+    ++     +   +L  ++E   ++I+   P+E A+E  F  K
Sbjct: 2   GFGLIKVVNKKMEFLQLNELILSKYDNHYQKLKVIFERTIELIETHHPDEIAIEAPFFGK 61

Query: 78  DAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMP-E 136
           +  + LKLG+A+ +A+ +     IP++EY P  IK A+ G G+  K+Q+  ML+ L+  +
Sbjct: 62  NVQSMLKLGRAQGVAMAAGLSRDIPITEYEPKKIKMAITGNGNASKEQVAKMLQQLLGLK 121

Query: 137 SFFKGKDAADALAIAVCHAYHANSG 161
              K  D+ D LA AVCH +  NSG
Sbjct: 122 ELPKNLDSTDGLAAAVCHFF--NSG 144


>gi|109947765|ref|YP_664993.1| Holliday junction resolvase [Helicobacter acinonychis str. Sheeba]
 gi|123173314|sp|Q17WI2|RUVC_HELAH RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|109714986|emb|CAJ99994.1| crossover junction endodeoxyribonuclease [Helicobacter acinonychis
           str. Sheeba]
          Length = 157

 Score = 82.8 bits (203), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/153 (32%), Positives = 83/153 (54%), Gaps = 4/153 (2%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + I+GIDPG R+ G+ I+  A + L  +++G  ++     L  ++  L E L  ++  + 
Sbjct: 1   MHILGIDPGSRKCGYAIISYASNKLSLITAG-FINITTTHLQEQILDLIEALDCLLDRYE 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARI-PVSEYAPNTIKKAVIGVGHGDK 123
             E A+E +F   +  + +KL Q R  A+    L R+   SEY P  +KKA+ G G   K
Sbjct: 60  VHEVAIEDIFFGYNPKSVIKLAQFRG-ALSLKILERVGNFSEYTPLQVKKALTGNGKAAK 118

Query: 124 KQIHMMLKMLMP-ESFFKGKDAADALAIAVCHA 155
           +Q+  M+K L+   S  K  D +DA+A+A+ HA
Sbjct: 119 EQVAFMVKRLLHITSEIKPLDISDAIAVAIMHA 151


>gi|223038423|ref|ZP_03608717.1| crossover junction endodeoxyribonuclease RuvC [Campylobacter rectus
           RM3267]
 gi|222880280|gb|EEF15367.1| crossover junction endodeoxyribonuclease RuvC [Campylobacter rectus
           RM3267]
          Length = 157

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/152 (32%), Positives = 77/152 (50%), Gaps = 2/152 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++I+GIDPG R  G+ IV+        + +G ++     SL +++ +L EGL  + KN +
Sbjct: 1   MKILGIDPGSRNCGYAIVEKTPVKTALIEAG-LIKIKPNSLQYQITELCEGLDLIFKNHK 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
            +E A+E +F   +    LKL Q R    L          EY P  +KK V G    DK+
Sbjct: 60  FDEVAIEDIFFAYNPKTVLKLAQFRGALSLKILQLHGDFVEYTPLQVKKTVTGKAKADKE 119

Query: 125 QIHMMLKMLMP-ESFFKGKDAADALAIAVCHA 155
           Q+  M+K ++      K  D  DA+AIA+ HA
Sbjct: 120 QVAFMVKKILGITKEIKPLDVTDAIAIALTHA 151


>gi|78778298|ref|YP_394613.1| Holliday junction resolvase [Sulfurimonas denitrificans DSM 1251]
 gi|123549501|sp|Q30NQ3|RUVC_SULDN RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|78498838|gb|ABB45378.1| Crossover junction endodeoxyribonuclease RuvC [Sulfurimonas
           denitrificans DSM 1251]
          Length = 159

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 78/150 (52%), Gaps = 2/150 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R+ G+ ++ +    +  + +G ++    + L F++ Q+ E    + KN + +
Sbjct: 3   ILGIDPGTRKMGYALISLEKGKIALIEAG-LIKIKAEELQFQIPQMVEAFEGIFKNHKID 61

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E +F   +   T+KL Q R   +L         SEY    +KKA+ G G   K+Q+
Sbjct: 62  EVAIEDIFYAHNPKTTIKLAQFRGAIMLMLIQQFGQFSEYTALQVKKALTGNGKATKEQV 121

Query: 127 HMMLKMLMP-ESFFKGKDAADALAIAVCHA 155
             M K L+  +   K  D  DA+A+A+ H+
Sbjct: 122 AFMAKRLLNIKKEIKPLDITDAIAVAITHS 151


>gi|33863407|ref|NP_894967.1| Holliday junction resolvase [Prochlorococcus marinus str. MIT 9313]
 gi|44888414|sp|Q7V6L9|RUVC_PROMM RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|33640856|emb|CAE21311.1| Crossover junction endodeoxyribonuclease RuvC [Prochlorococcus
           marinus str. MIT 9313]
          Length = 154

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 41/122 (33%), Positives = 71/122 (58%), Gaps = 1/122 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPG+ R G+G++D +      +  G I +        R+ ++   L  +I+ W+
Sbjct: 1   MRILGIDPGIARVGYGVIDTSNGQQQMLDCGIIRTNPGIDDGERMVEIASDLRQLIRRWK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ AAVE+ F  + +  T+ + QAR + I++ A  R+PV E+ P  IK A+ G GH +K 
Sbjct: 61  PQLAAVEKFFFYRSS-TTISVVQARGVIIMTLARFRVPVMEFPPMQIKLALAGSGHAEKD 119

Query: 125 QI 126
           ++
Sbjct: 120 EV 121


>gi|268678644|ref|YP_003303075.1| crossover junction endodeoxyribonuclease RuvC [Sulfurospirillum
           deleyianum DSM 6946]
 gi|268616675|gb|ACZ11040.1| crossover junction endodeoxyribonuclease RuvC [Sulfurospirillum
           deleyianum DSM 6946]
          Length = 157

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/150 (34%), Positives = 78/150 (52%), Gaps = 2/150 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R  G+ I+    + L  V +G ++    + L  ++ +L EGL  + K+   +
Sbjct: 3   ILGIDPGTRNCGYSILRKEKNRLVLVEAG-LIKIKEKILQHQIMELVEGLDVLFKHHEID 61

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E +F   +    LKL Q R    L     +   SEY P  +KKAV G G   K+Q+
Sbjct: 62  EVAIEDIFYAYNPQTVLKLAQFRGALSLKILQVKGNFSEYTPLQVKKAVTGNGKAAKEQV 121

Query: 127 HMMLKMLMP-ESFFKGKDAADALAIAVCHA 155
             M+K ++  +   K  D  DA+AIA+ HA
Sbjct: 122 AFMVKKILGIKQEIKPLDITDAIAIAITHA 151


>gi|282855631|ref|ZP_06264945.1| crossover junction endodeoxyribonuclease RuvC [Pyramidobacter
           piscolens W5455]
 gi|282586561|gb|EFB91815.1| crossover junction endodeoxyribonuclease RuvC [Pyramidobacter
           piscolens W5455]
          Length = 172

 Score = 82.0 bits (201), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 84/152 (55%), Gaps = 3/152 (1%)

Query: 3   KSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
           K +  +GIDPG+ R G+G V  +G +   ++ G + +   Q  + R+  LY+G+ + I+N
Sbjct: 6   KGLVCLGIDPGIGRLGYGFVCQSGSSYRALAYGCLETPPHQDTSVRIKALYDGVREQIEN 65

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
             P   +VE+++  ++      + Q R   +L  A  R+P+ E  P+ +K  V G G  +
Sbjct: 66  CSPHFMSVERLYFGQNRTTAEAVWQVRGAILLLGAQYRLPIIEPKPSEVKLTVCGDGTAE 125

Query: 123 KKQIHMMLKML--MPESFFKGKDAADALAIAV 152
           K+Q+ +M++ L  +PE   +  D ADAL IA+
Sbjct: 126 KRQVQLMIQQLLNLPE-IPRPDDTADALGIAL 156


>gi|291280037|ref|YP_003496872.1| crossover junction endodeoxyribonuclease RuvC [Deferribacter
           desulfuricans SSM1]
 gi|290754739|dbj|BAI81116.1| crossover junction endodeoxyribonuclease RuvC [Deferribacter
           desulfuricans SSM1]
          Length = 166

 Score = 82.0 bits (201), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/153 (33%), Positives = 85/153 (55%), Gaps = 5/153 (3%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAF--RLCQLYEGLTDVIKNWR 64
           I GIDPGL +TG G++++A +N  F      V   + SL+   ++ ++ + L+  +K + 
Sbjct: 3   IFGIDPGLNKTGVGVLELADNNNSFRCVDYTVLKNKSSLSTIDKIAEITDSLSKYVKRYS 62

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALAR-IPVSEYAPNTIKKAVIGVGHGDK 123
           P  AAVE+ F + +    + LG AR  AI+S  L+  + V ++    IKK+V+G G  DK
Sbjct: 63  PLYAAVEESFYSVNVKTAISLGMARG-AIISTLLSHSVKVFQFTALQIKKSVVGYGKADK 121

Query: 124 KQIHMMLKMLMPESFFKG-KDAADALAIAVCHA 155
            Q+  M++M +  S      D +DALA  +C A
Sbjct: 122 NQVKKMVEMQLNISLDNVLNDVSDALACGICLA 154


>gi|307722079|ref|YP_003893219.1| crossover junction endodeoxyribonuclease RuvC [Sulfurimonas
           autotrophica DSM 16294]
 gi|306980172|gb|ADN10207.1| crossover junction endodeoxyribonuclease RuvC [Sulfurimonas
           autotrophica DSM 16294]
          Length = 158

 Score = 82.0 bits (201), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 79/150 (52%), Gaps = 2/150 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R  G+ ++ +    +  + +G ++    + L F++ Q+ EGL+ + +N   +
Sbjct: 3   ILGIDPGTRNMGYALISLQNGKISLIEAG-LIKMKAEDLQFQIPQMVEGLSRIFENHTID 61

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E +F   +   T+KL Q R   +L          EY    +KKA+ G     K+Q+
Sbjct: 62  EVAMEDIFYAHNPATTIKLAQFRGAIMLKLLQEFGQFHEYTALQVKKALTGKAKAQKEQV 121

Query: 127 HMMLKMLMP-ESFFKGKDAADALAIAVCHA 155
             M+K L+  +   K  D +DA+A+A+ H+
Sbjct: 122 AFMVKRLLNIKKEIKPLDISDAMAVAITHS 151


>gi|111221573|ref|YP_712367.1| Holliday junction resolvase [Frankia alni ACN14a]
 gi|122954409|sp|Q0RNU8|RUVC_FRAAA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|111149105|emb|CAJ60788.1| Crossover junction endodeoxyribonuclease ruvC (Holliday junction
           nuclease ruvC) (Holliday juction resolvase ruvC)
           [Frankia alni ACN14a]
          Length = 197

 Score = 82.0 bits (201), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 46/131 (35%), Positives = 71/131 (54%), Gaps = 1/131 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G G+VD A G     V +G + +     +A RL  + +G+   +   
Sbjct: 1   MRVLGVDPGLTRCGLGVVDGALGSRARLVEAGVVRTPAGAEVADRLRAVADGIDAWLDRT 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RP+  AVE+VF   +    +   QA A+AI+  A   +PV  Y P+ +K AV G G  DK
Sbjct: 61  RPDAVAVEKVFSQANVRTVMGTAQAGAVAIMLAARRDLPVGLYTPSEVKAAVTGSGRADK 120

Query: 124 KQIHMMLKMLM 134
            Q+  M+  L+
Sbjct: 121 AQVGFMVTRLL 131


>gi|78043886|ref|YP_360356.1| crossover junction endodeoxyribonuclease RuvC [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|90146444|sp|Q3ABX8|RUVC_CARHZ RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|77996001|gb|ABB14900.1| crossover junction endodeoxyribonuclease RuvC [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 158

 Score = 82.0 bits (201), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 50/148 (33%), Positives = 83/148 (56%), Gaps = 2/148 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++IIGIDPG    G G+++     L  V +   ++    +   RL  +++ L +++   +
Sbjct: 1   MKIIGIDPGTAIVGVGVLEKKNGKLI-VKNFQAITTPPIAKEKRLKIIFQKLNEILIQEK 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           PE   VE++F +K+    + +G+AR + +L+ AL  IPV E  P  +K  V G GH  K 
Sbjct: 60  PEIVVVEELFFSKNVKTAISVGEARGVVLLASALNDIPVLELKPVEVKTIVTGYGHAPKS 119

Query: 125 QI-HMMLKMLMPESFFKGKDAADALAIA 151
           Q+ +M+ K+L  ++  K  D ADALAIA
Sbjct: 120 QVEYMIAKLLGLKTPPKPDDVADALAIA 147


>gi|269792534|ref|YP_003317438.1| crossover junction endodeoxyribonuclease RuvC [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100169|gb|ACZ19156.1| crossover junction endodeoxyribonuclease RuvC [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 165

 Score = 81.6 bits (200), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 83/164 (50%), Gaps = 1/164 (0%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M + +  +GIDPG+   G+G+V   G +L     G I +    SL  RL  L+  L   +
Sbjct: 1   MPRDLLCLGIDPGIGTLGYGLVRQRGGDLSAEGYGAIHTPPGLSLPERLSCLFGSLEGEL 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
              RP+  AVE+++  ++      + QAR + +L  +   +PV E  P+ +K AV G G 
Sbjct: 61  GGVRPDLVAVERLYFGRNTTTAEMVWQARGVVLLFASRLGVPVLEPKPSEVKMAVCGYGG 120

Query: 121 GDKKQIHMMLKMLMP-ESFFKGKDAADALAIAVCHAYHANSGYY 163
            DK+Q+ +M+  L+  +      D ADALA+A+        GY+
Sbjct: 121 ADKRQVQLMVTGLLGLKRCPSPDDVADALAVAIAGLSMCIGGYW 164


>gi|332664054|ref|YP_004446842.1| Crossover junction endodeoxyribonuclease ruvC [Haliscomenobacter
           hydrossis DSM 1100]
 gi|332332868|gb|AEE49969.1| Crossover junction endodeoxyribonuclease ruvC [Haliscomenobacter
           hydrossis DSM 1100]
          Length = 188

 Score = 81.6 bits (200), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 53/159 (33%), Positives = 90/159 (56%), Gaps = 1/159 (0%)

Query: 3   KSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
           ++ RI+G+DPG    G+ I++V G  L  V  G +     +    +L +++E +T +I  
Sbjct: 6   ENYRILGVDPGTNILGYAILEVNGAELKPVDIGVVYLQKLEDHPQKLKRIFERITSIISQ 65

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
           + P   A+E  F  K+  + LKLG+A+ +A+ +     + ++EY+P  IK++V G G+  
Sbjct: 66  YGPRYLAIEAPFFGKNPQSMLKLGRAQGVAMAAAITKGLEITEYSPKKIKQSVTGNGNAA 125

Query: 123 KKQIHMMLKMLMPESF-FKGKDAADALAIAVCHAYHANS 160
           K+Q+  ML+  +  S   +  DA DALA AVCH Y + S
Sbjct: 126 KEQVAAMLQNTLKVSLDGQYLDATDALAAAVCHYYQSRS 164


>gi|32266610|ref|NP_860642.1| Holliday junction resolvase [Helicobacter hepaticus ATCC 51449]
 gi|44888423|sp|Q7VH56|RUVC_HELHP RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|32262661|gb|AAP77708.1| holliday junction resolvase RuvC [Helicobacter hepaticus ATCC
           51449]
          Length = 185

 Score = 81.6 bits (200), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 51/154 (33%), Positives = 82/154 (53%), Gaps = 4/154 (2%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAG--DNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
           + I+GIDPG R  G+ I++ A   ++L  + +G I+    + L  ++ +  EG+  VIKN
Sbjct: 1   MHILGIDPGSRNCGYAIINYAPHVNSLKLIEAG-IIKIKERDLQTQIMEFVEGIDLVIKN 59

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
              +E A+E +F   +  + +KL Q R    L         SEY P  +KKA+ G G  D
Sbjct: 60  IHIDEVAIEDIFFAYNPQSVIKLAQFRGALSLKILQEIGNFSEYTPLQVKKAITGNGKAD 119

Query: 123 KKQIHMMLKMLMP-ESFFKGKDAADALAIAVCHA 155
           K Q+  M+K ++  +   K  D  DA+AIA+ H+
Sbjct: 120 KTQVAFMVKRILGLKGEIKPLDITDAIAIAITHS 153


>gi|332708977|ref|ZP_08428947.1| holliday junction endonuclease RuvC [Lyngbya majuscula 3L]
 gi|332352166|gb|EGJ31736.1| holliday junction endonuclease RuvC [Lyngbya majuscula 3L]
          Length = 185

 Score = 81.3 bits (199), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 90/181 (49%), Gaps = 30/181 (16%)

Query: 6   RIIGIDPGLRRTGWG----------------------------IVDVAGDNLCFVSSGTI 37
           RI+GIDPGL   G+G                            ++    + L  +  G I
Sbjct: 4   RILGIDPGLATLGFGAISCQTTKISKSANTKGSLGVAKPSRQSLIQATLEPLQLLDFGII 63

Query: 38  VSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPA 97
            +  +     RLC +YE L  ++++ +P+  A+E++F  + +  T+ + QAR + +L  A
Sbjct: 64  QTPAKTDYGSRLCTIYEDLHTLLEHCQPDLVAIEKLFFYRMST-TISVAQARGVVVLVTA 122

Query: 98  LARIPVSEYAPNTIKKAVIGVGHGDKKQIHM-MLKMLMPESFFKGKDAADALAIAVCHAY 156
             ++P+ E+ P  IK+A+ G G+ DK ++   +++ L  ++  K  D ADALA+A+   +
Sbjct: 123 QHQVPMVEFTPGQIKQAMTGYGNADKYEVQQAVMRELNLDTIPKPDDLADALAVALTAWF 182

Query: 157 H 157
           H
Sbjct: 183 H 183


>gi|154149136|ref|YP_001407304.1| Holliday junction resolvase [Campylobacter hominis ATCC BAA-381]
 gi|166232079|sp|A7I463|RUVC_CAMHC RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|153805145|gb|ABS52152.1| crossover junction endodeoxyribonuclease RuvC [Campylobacter
           hominis ATCC BAA-381]
          Length = 158

 Score = 81.3 bits (199), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 81/154 (52%), Gaps = 2/154 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++I+GIDPG R  G+ +++   + +  + +G ++    ++L F+L Q+ E +  + +  +
Sbjct: 1   MKILGIDPGTRNMGYAVLEKNVNKISLIEAG-LIKMKPENLQFQLTQMCEAIDQIFEFHK 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
            +E A+E +F   +  + LKL Q R    L         +EY P  IKK V G    DK 
Sbjct: 60  IDEVAIESMFYAYNPQSVLKLAQFRGGLSLKILQVFGNFAEYTPLQIKKNVTGKAKADKT 119

Query: 125 QIHMML-KMLMPESFFKGKDAADALAIAVCHAYH 157
           Q+  M+ KML      K  D  DA+AIA+ HA++
Sbjct: 120 QVAFMVKKMLGISKDIKPLDVTDAIAIAITHAHN 153


>gi|291515509|emb|CBK64719.1| crossover junction endodeoxyribonuclease RuvC [Alistipes shahii WAL
           8301]
          Length = 207

 Score = 81.3 bits (199), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 89/157 (56%), Gaps = 3/157 (1%)

Query: 6   RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           RI+GIDPG    G+G++++ G  +  V  G I          +L  ++E +  ++  + P
Sbjct: 10  RIMGIDPGTNYMGYGVLEIEGRTVRSVVLGDIDLHKLPDPYAKLRYIFERVGALVDEYAP 69

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALAR-IPVSEYAPNTIKKAVIGVGHGDKK 124
            E A+E  F  ++  + LKLG+A+ +A ++ AL+R I V EYAP  IK+++ G G   K+
Sbjct: 70  REVALESPFFGENVQSMLKLGRAQGVA-MAAALSRGIDVFEYAPMRIKQSITGRGSAAKE 128

Query: 125 QI-HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           Q+  ++ + L  +   K  DA D +A+A+CH + + S
Sbjct: 129 QVASIVCRTLAIDRPPKRLDATDGMAVALCHYFTSAS 165


>gi|193215492|ref|YP_001996691.1| crossover junction endodeoxyribonuclease RuvC [Chloroherpeton
           thalassium ATCC 35110]
 gi|238692692|sp|B3QTP6|RUVC_CHLT3 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|193088969|gb|ACF14244.1| crossover junction endodeoxyribonuclease RuvC [Chloroherpeton
           thalassium ATCC 35110]
          Length = 186

 Score = 81.3 bits (199), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 80/154 (51%), Gaps = 1/154 (0%)

Query: 8   IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEE 67
           +G+DPG   TG+G++  +           I    +     R+  +Y+ L  VI  ++P +
Sbjct: 4   LGVDPGSIVTGYGVIGKSEAGFRVFDYSAIRPGGKCDFPQRIKYIYDTLEKVICAYKPTQ 63

Query: 68  AAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI- 126
            ++E  F  K+A + LKLGQ R   I+      +   EY+P  +KK+V G G+  K+Q+ 
Sbjct: 64  LSLETAFYGKNAQSALKLGQVRGAIIILAMNYNLKFVEYSPREVKKSVAGTGNASKEQVA 123

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           +M+ KML  +      D +DALAIA+C  + + S
Sbjct: 124 YMVKKMLSIDDEKMALDTSDALAIALCGHFKSAS 157


>gi|294101863|ref|YP_003553721.1| crossover junction endodeoxyribonuclease RuvC [Aminobacterium
           colombiense DSM 12261]
 gi|293616843|gb|ADE56997.1| crossover junction endodeoxyribonuclease RuvC [Aminobacterium
           colombiense DSM 12261]
          Length = 174

 Score = 81.3 bits (199), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 44/133 (33%), Positives = 72/133 (54%)

Query: 2   RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           + SI  IGIDPGL R G+ +V   G +      G I +  +  ++ RL  +Y  L + I+
Sbjct: 4   KASISCIGIDPGLGRLGFALVRKEGHSFFAEEFGCIETPAKTDISLRLEMIYNKLGERIQ 63

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
              P+  +VE++F  ++      + QAR I +L  +  ++PV E  P+ IK AV G G  
Sbjct: 64  CCSPDFMSVEKLFFGRNTTTAEYVWQARGIVLLLASQYKLPVYEPKPSQIKVAVCGFGSA 123

Query: 122 DKKQIHMMLKMLM 134
           DKKQ+  M++ ++
Sbjct: 124 DKKQVQRMVQRML 136


>gi|309789259|ref|ZP_07683852.1| crossover junction endodeoxyribonuclease RuvC [Shigella dysenteriae
           1617]
 gi|308923013|gb|EFP68527.1| crossover junction endodeoxyribonuclease RuvC [Shigella dysenteriae
           1617]
          Length = 136

 Score = 81.3 bits (199), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 37/90 (41%), Positives = 61/90 (67%)

Query: 45  LAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVS 104
           L  RL  +Y G+T++I  ++P+  A+EQVF+ K+A + LKLGQAR +AI++     +PV 
Sbjct: 4   LPSRLKLIYAGVTEIITQFQPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVF 63

Query: 105 EYAPNTIKKAVIGVGHGDKKQIHMMLKMLM 134
           EYA   +K+ V+G+G  +K Q+  M++ L+
Sbjct: 64  EYAARQVKQTVVGIGSAEKSQVQHMVRTLL 93


>gi|308183031|ref|YP_003927158.1| Holliday junction resolvase [Helicobacter pylori PeCan4]
 gi|308065216|gb|ADO07108.1| Holliday junction resolvase [Helicobacter pylori PeCan4]
          Length = 157

 Score = 81.3 bits (199), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 50/153 (32%), Positives = 82/153 (53%), Gaps = 4/153 (2%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + I+GIDPG R+ G+ I+    + L  +++G  ++     L  ++  L E L  ++  + 
Sbjct: 1   MHILGIDPGSRKCGYAIISHTSNKLSLITAG-FINITTTRLQEQILDLIEALDCLLDRYE 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARI-PVSEYAPNTIKKAVIGVGHGDK 123
             E A+E +F   +  + +KL Q R  A+    L RI   SEY P  +KKA+ G G   K
Sbjct: 60  VNEVAIEDIFFGYNPKSVIKLAQFRG-ALSLKILERIGNFSEYTPLQVKKALTGNGKAAK 118

Query: 124 KQIHMMLKMLMP-ESFFKGKDAADALAIAVCHA 155
           +Q+  M+K L+   S  K  D +DA+A+A+ HA
Sbjct: 119 EQVAFMVKRLLNITSEIKPLDISDAIAVAITHA 151


>gi|157738529|ref|YP_001491213.1| Holliday junction resolvase [Arcobacter butzleri RM4018]
 gi|315635400|ref|ZP_07890666.1| crossover junction endoribonuclease subunit C [Arcobacter butzleri
           JV22]
 gi|167012676|sp|A8EX70|RUVC_ARCB4 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|157700383|gb|ABV68543.1| crossover junction endodeoxyribonuclease RuvC [Arcobacter butzleri
           RM4018]
 gi|315480158|gb|EFU70825.1| crossover junction endoribonuclease subunit C [Arcobacter butzleri
           JV22]
          Length = 154

 Score = 81.3 bits (199), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 49/152 (32%), Positives = 82/152 (53%), Gaps = 2/152 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++I+GIDPG R  G+ IV+  G +L  + +G ++    + L  ++ ++ EGL  + KN +
Sbjct: 1   MKILGIDPGTRNCGYAIVEKNGRDLKLIEAG-LIKIKTKILQEQIVEMTEGLDLLFKNHK 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
            ++ ++E +F   +    +KL Q R    L         SEY P  +K+AV G G   K+
Sbjct: 60  IDQVSIEDMFYAFNPKTVIKLAQFRGAISLKILQEFGNFSEYTPLQVKQAVTGNGKATKE 119

Query: 125 QIHMMLKMLMP-ESFFKGKDAADALAIAVCHA 155
           Q+  M+K L+  +   K  D  DA+AIA+ HA
Sbjct: 120 QVAFMVKRLLNVKKEIKPLDITDAIAIALTHA 151


>gi|148241827|ref|YP_001226984.1| Holliday junction resolvase [Synechococcus sp. RCC307]
 gi|166233306|sp|A5GRX2|RUVC_SYNR3 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|147850137|emb|CAK27631.1| Crossover junction endodeoxyribonuclease RuvC (Holliday juction
           resolvase RuvC) [Synechococcus sp. RCC307]
          Length = 157

 Score = 81.3 bits (199), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 86/157 (54%), Gaps = 5/157 (3%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAG---DNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           +RI+G+DPGL R G+G+++V     +    V  G I +   +    R+ ++   L  +++
Sbjct: 1   MRILGLDPGLARVGYGVLEVDEQRRNQPEMVDCGIISTDAGRGEGERMVEIARDLRQLLR 60

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
             RP+ AAVE+ F  + +  T+ + QAR + I++ A  +IP  EY P  IK A+ G GH 
Sbjct: 61  LHRPDLAAVEKFFFYRSS-NTIAVVQARGVLIMTLARFQIPTVEYPPMQIKLALAGSGHA 119

Query: 122 DKKQIH-MMLKMLMPESFFKGKDAADALAIAVCHAYH 157
           DK ++   +++ L      K  DAADALA+ +   + 
Sbjct: 120 DKGEVQDAVMRELRLNERPKPDDAADALAVGLTAWFQ 156


>gi|57506230|ref|ZP_00372149.1| crossover junction endodeoxyribonuclease RuvC [Campylobacter
           upsaliensis RM3195]
 gi|57015498|gb|EAL52293.1| crossover junction endodeoxyribonuclease RuvC [Campylobacter
           upsaliensis RM3195]
          Length = 159

 Score = 81.3 bits (199), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 81/154 (52%), Gaps = 2/154 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++I+GIDPG R  G+ I++V       + +G ++     +L +++ +L EGL  + K+  
Sbjct: 1   MKILGIDPGSRFCGYAILEVIKGKNILIEAG-LIKIKPSTLQYQITELCEGLDLIFKHHH 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
            +E A+E +F   +  + LKL Q R    L         +EY+P  IKK + G     K+
Sbjct: 60  FDEVAIEDIFFAYNPQSVLKLAQFRGALSLKILQLHGEFAEYSPLQIKKTITGKAKASKE 119

Query: 125 QIHMMLKMLMPESF-FKGKDAADALAIAVCHAYH 157
           Q+  M+K L+  S   K  D  DA+AIA+ HA H
Sbjct: 120 QVAFMVKRLLGISKDIKPLDITDAIAIALTHAAH 153


>gi|332882727|ref|ZP_08450338.1| crossover junction endodeoxyribonuclease RuvC [Capnocytophaga sp.
           oral taxon 329 str. F0087]
 gi|332679229|gb|EGJ52215.1| crossover junction endodeoxyribonuclease RuvC [Capnocytophaga sp.
           oral taxon 329 str. F0087]
          Length = 167

 Score = 81.3 bits (199), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 78/149 (52%), Gaps = 11/149 (7%)

Query: 18  GWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNK 77
           G+GI+ V    +  +    +      +   +L  ++    ++I  + P+E A+E  F  K
Sbjct: 2   GFGIIRVENQQMKLLQLNELQLSKYNNHYIKLGVIFNRTLELIDTYHPDELAIEAPFFGK 61

Query: 78  DAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKML---- 133
           +  + LKLG+A+ +A+ +     IP++EY P  +K A+ G G   K+Q+  ML+ L    
Sbjct: 62  NVQSMLKLGRAQGVAMAAGLSREIPITEYEPKKVKMAITGNGAASKEQVAKMLQQLLGLK 121

Query: 134 -MPESFFKGKDAADALAIAVCHAYHANSG 161
            +P+ F    DA D LA+AVCH +  N+G
Sbjct: 122 ELPKHF----DATDGLAVAVCHYF--NTG 144


>gi|308235708|ref|ZP_07666445.1| Holliday junction resolvase [Gardnerella vaginalis ATCC 14018]
 gi|311114742|ref|YP_003985963.1| crossover junction endoribonuclease subunit C [Gardnerella
           vaginalis ATCC 14019]
 gi|310946236|gb|ADP38940.1| crossover junction endoribonuclease subunit C [Gardnerella
           vaginalis ATCC 14019]
          Length = 193

 Score = 81.3 bits (199), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 70/129 (54%), Gaps = 1/129 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           I+G+DPGL R G G+++      L F+    + S  + S   RL ++Y GL + I+ + P
Sbjct: 3   ILGVDPGLTRCGVGVIEAGVSRRLSFIHVDVLRSDPKTSQDLRLLEIYNGLVEKIERFSP 62

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
           +  ++E+VF  ++    L   Q   +A+L+ A   IPV+ + P  +K AV G G  DK Q
Sbjct: 63  DTISIERVFAQENRNTVLGTAQVAGVAMLAAAQRSIPVALHTPTEVKLAVAGNGKADKTQ 122

Query: 126 IHMMLKMLM 134
           +  M+  L+
Sbjct: 123 VERMVARLL 131


>gi|315928463|gb|EFV07775.1| crossover junction endodeoxyribonuclease RuvC [Campylobacter jejuni
           subsp. jejuni DFVF1099]
          Length = 184

 Score = 80.9 bits (198), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 49/153 (32%), Positives = 79/153 (51%), Gaps = 2/153 (1%)

Query: 4   SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +++I+GIDPG R  G+ I++        + +G ++     +L +++ +L EGL  + KN 
Sbjct: 26  NLKILGIDPGSRNCGYAIIEANKGKNILIEAG-LIKIKPSTLQYQITELCEGLDLIFKNH 84

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
             +E A+E +F   +    LKL Q R    L         +EY P  +KKAV G     K
Sbjct: 85  SFDEVAIEDIFFAYNPKTVLKLAQFRGALSLKILQIHGDFAEYTPLQVKKAVTGKAKATK 144

Query: 124 KQIHMMLKMLMPESF-FKGKDAADALAIAVCHA 155
           +Q+  M+K L+  S   K  D  DA+A+A+ HA
Sbjct: 145 EQVAFMVKRLLGLSKDIKPLDITDAIAVALTHA 177


>gi|311894865|dbj|BAJ27273.1| putative crossover junction endodeoxyribonuclease RuvC
           [Kitasatospora setae KM-6054]
          Length = 211

 Score = 80.9 bits (198), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 54/158 (34%), Positives = 89/158 (56%), Gaps = 2/158 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVD-VAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G G+V+ + G  L  +  G + +     +  RL  + +GL   +  +
Sbjct: 1   MRVLGVDPGLTRCGVGVVEGLPGRRLDMLGVGVVRTPSDDEIGPRLLAIEQGLESWLDRY 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +PE  AVE+VF   +    +   QA A+A+L      IPV+ + P+ +K AV G G  DK
Sbjct: 61  QPELVAVERVFAQHNVRTVMGTAQASAVAVLCATRRGIPVTLHTPSEVKAAVTGSGRADK 120

Query: 124 KQIH-MMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
            Q+  M+ ++L  ++  K  DAADALA+A+CH +   +
Sbjct: 121 AQVTAMVTRILRLDAPPKPADAADALALAICHIWRGGT 158


>gi|157165401|ref|YP_001467853.1| Holliday junction resolvase [Campylobacter concisus 13826]
 gi|166231591|sp|A7ZGE5|RUVC_CAMC1 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|112801768|gb|EAT99112.1| crossover junction endodeoxyribonuclease RuvC [Campylobacter
           concisus 13826]
          Length = 157

 Score = 80.9 bits (198), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 79/152 (51%), Gaps = 2/152 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++I+GIDPG +  G+ I++ +      + +G ++     +L +++ +L EGL  + KN +
Sbjct: 1   MKILGIDPGTKNCGYAILEKSKFKTILLEAG-LIKIKPNTLQYQITELCEGLDLIFKNHK 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
            +E A+E +F   +    LKL Q R    L         +EY P  +KK V G    DK+
Sbjct: 60  FDEVAIEDIFFAYNPKTVLKLAQFRGALSLKILQLHGDFAEYTPLQVKKTVTGKAKADKE 119

Query: 125 QIHMMLKMLMP-ESFFKGKDAADALAIAVCHA 155
           Q+  M+K ++      K  D  DA+AIA+ HA
Sbjct: 120 QVAFMVKKILGINKEIKPLDITDAIAIALTHA 151


>gi|315639362|ref|ZP_07894524.1| crossover junction endoribonuclease subunit C [Campylobacter
           upsaliensis JV21]
 gi|315480688|gb|EFU71330.1| crossover junction endoribonuclease subunit C [Campylobacter
           upsaliensis JV21]
          Length = 159

 Score = 80.9 bits (198), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 80/154 (51%), Gaps = 2/154 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++I+GIDPG R  G+ I++V       + +G ++     +L +++ +L EGL  + K+  
Sbjct: 1   MKILGIDPGSRFCGYAILEVIKGKNTLIEAG-LIKIKPSTLQYQITELCEGLDLIFKHHH 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
            +E A+E +F   +  + LKL Q R    L         +EY P  IKK + G     K+
Sbjct: 60  FDEVAIEDIFFAYNPQSVLKLAQFRGALSLKILQLHGEFAEYTPLQIKKTITGKAKASKE 119

Query: 125 QIHMMLKMLMPESF-FKGKDAADALAIAVCHAYH 157
           Q+  M+K L+  S   K  D  DA+AIA+ HA H
Sbjct: 120 QVAFMVKRLLGISKDIKPLDITDAIAIALTHAAH 153


>gi|86150551|ref|ZP_01068775.1| crossover junction endodeoxyribonuclease RuvC [Campylobacter jejuni
           subsp. jejuni CF93-6]
 gi|86152383|ref|ZP_01070593.1| crossover junction endodeoxyribonuclease RuvC [Campylobacter jejuni
           subsp. jejuni 260.94]
 gi|86154008|ref|ZP_01072210.1| crossover junction endodeoxyribonuclease RuvC [Campylobacter jejuni
           subsp. jejuni HB93-13]
 gi|88597675|ref|ZP_01100908.1| crossover junction endodeoxyribonuclease RuvC [Campylobacter jejuni
           subsp. jejuni 84-25]
 gi|315125110|ref|YP_004067114.1| crossover junction endodeoxyribonuclease [Campylobacter jejuni
           subsp. jejuni ICDCCJ07001]
 gi|85839003|gb|EAQ56268.1| crossover junction endodeoxyribonuclease RuvC [Campylobacter jejuni
           subsp. jejuni CF93-6]
 gi|85840680|gb|EAQ57932.1| crossover junction endodeoxyribonuclease RuvC [Campylobacter jejuni
           subsp. jejuni 260.94]
 gi|85842546|gb|EAQ59759.1| crossover junction endodeoxyribonuclease RuvC [Campylobacter jejuni
           subsp. jejuni HB93-13]
 gi|88189979|gb|EAQ93955.1| crossover junction endodeoxyribonuclease RuvC [Campylobacter jejuni
           subsp. jejuni 84-25]
 gi|307748586|gb|ADN91856.1| Holliday junction resolvase [Campylobacter jejuni subsp. jejuni M1]
 gi|315018832|gb|ADT66925.1| crossover junction endodeoxyribonuclease [Campylobacter jejuni
           subsp. jejuni ICDCCJ07001]
 gi|315930327|gb|EFV09415.1| crossover junction endodeoxyribonuclease RuvC [Campylobacter jejuni
           subsp. jejuni 305]
          Length = 184

 Score = 80.9 bits (198), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 49/153 (32%), Positives = 79/153 (51%), Gaps = 2/153 (1%)

Query: 4   SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +++I+GIDPG R  G+ I++        + +G ++     +L +++ +L EGL  + KN 
Sbjct: 26  NLKILGIDPGSRNCGYAIIEADKGKNILIEAG-LIKIKPSTLQYQITELCEGLDLIFKNH 84

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
             +E A+E +F   +    LKL Q R    L         +EY P  +KKAV G     K
Sbjct: 85  SFDEVAIEDIFFAYNPKTVLKLAQFRGALSLKILQIHGDFAEYTPLQVKKAVTGKAKATK 144

Query: 124 KQIHMMLKMLMPESF-FKGKDAADALAIAVCHA 155
           +Q+  M+K L+  S   K  D  DA+A+A+ HA
Sbjct: 145 EQVAFMVKRLLGLSKDIKPLDITDAIAVALTHA 177


>gi|148926819|ref|ZP_01810498.1| crossover junction endodeoxyribonuclease [Campylobacter jejuni
           subsp. jejuni CG8486]
 gi|145844544|gb|EDK21651.1| crossover junction endodeoxyribonuclease [Campylobacter jejuni
           subsp. jejuni CG8486]
          Length = 184

 Score = 80.9 bits (198), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 49/153 (32%), Positives = 79/153 (51%), Gaps = 2/153 (1%)

Query: 4   SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +++I+GIDPG R  G+ I++        + +G ++     +L +++ +L EGL  + KN 
Sbjct: 26  NLKILGIDPGSRNCGYAIIEADKGKNILIEAG-LIKIKPSTLQYQITELCEGLDLIFKNH 84

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
             +E A+E +F   +    LKL Q R    L         +EY P  +KKAV G     K
Sbjct: 85  SFDEVAIEDIFFAYNPKTVLKLAQFRGALSLKILQIHGDFAEYTPLQVKKAVTGKAKATK 144

Query: 124 KQIHMMLKMLMPESF-FKGKDAADALAIAVCHA 155
           +Q+  M+K L+  S   K  D  DA+A+A+ HA
Sbjct: 145 EQVAFMVKRLLGLSKDIKPLDITDAIAVALTHA 177


>gi|283953665|ref|ZP_06371196.1| crossover junction endodeoxyribonuclease RuvC [Campylobacter jejuni
           subsp. jejuni 414]
 gi|283794706|gb|EFC33444.1| crossover junction endodeoxyribonuclease RuvC [Campylobacter jejuni
           subsp. jejuni 414]
          Length = 158

 Score = 80.9 bits (198), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 48/152 (31%), Positives = 78/152 (51%), Gaps = 2/152 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++I+GIDPG R  G+ I+++       + +G ++     +L +++ +L EGL  + KN  
Sbjct: 1   MKILGIDPGSRNCGYAIIEINKTKNILIEAG-LIKIKPSTLQYQITELCEGLDLIFKNHS 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
            +E A+E +F   +    LKL Q R    L         +EY P  +KKAV G     K+
Sbjct: 60  FDEVAIEDIFFAYNPKTVLKLAQFRGALSLKILQIHGDFAEYTPLQVKKAVTGKAKATKE 119

Query: 125 QIHMMLKMLMP-ESFFKGKDAADALAIAVCHA 155
           Q+  M+K L+      K  D  DA+A+A+ HA
Sbjct: 120 QVAFMVKRLLGLRKDIKPLDITDAIAVALTHA 151


>gi|302866771|ref|YP_003835408.1| crossover junction endodeoxyribonuclease RuvC [Micromonospora
           aurantiaca ATCC 27029]
 gi|302569630|gb|ADL45832.1| crossover junction endodeoxyribonuclease RuvC [Micromonospora
           aurantiaca ATCC 27029]
          Length = 175

 Score = 80.9 bits (198), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 60/159 (37%), Positives = 89/159 (55%), Gaps = 4/159 (2%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLC-FVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G G+V+      C  V+   + +     LA RL  L   LT ++   
Sbjct: 1   MRVLGVDPGLTRCGVGVVEGVPGRPCTLVAYYVVYTDPEGDLALRLLHLDRSLTGLVAEH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RP+  AVE+VF   +    +   QA  +A+L+ A A +PV+ Y P+ +K AV G G  DK
Sbjct: 61  RPDAVAVERVFSQHNVRTVMGTAQASGVAVLAGARAGLPVTTYTPSEVKAAVTGSGQADK 120

Query: 124 KQIHMMLKML--MPESFFKGKDAADALAIAVCHAYHANS 160
           KQ+  M+  L  +PE   K  DAADALA+A+CH +   +
Sbjct: 121 KQMTTMVTRLLRLPEP-PKPADAADALALAICHVWRGGT 158


>gi|205355741|ref|ZP_03222511.1| crossover junction endodeoxyribonuclease [Campylobacter jejuni
           subsp. jejuni CG8421]
 gi|205346518|gb|EDZ33151.1| crossover junction endodeoxyribonuclease [Campylobacter jejuni
           subsp. jejuni CG8421]
          Length = 184

 Score = 80.5 bits (197), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 49/153 (32%), Positives = 79/153 (51%), Gaps = 2/153 (1%)

Query: 4   SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +++I+GIDPG R  G+ I++        + +G ++     +L +++ +L EGL  + KN 
Sbjct: 26  NLKILGIDPGSRNCGYAIIEANKGKNILMEAG-LIKIKLSTLQYQITELCEGLDLIFKNH 84

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
             +E A+E +F   +    LKL Q R    L         +EY P  +KKAV G     K
Sbjct: 85  SFDEVAIEDIFFAYNPKTVLKLAQFRGALSLKILQIHGDFAEYTPLQVKKAVTGKAKATK 144

Query: 124 KQIHMMLKMLMPESF-FKGKDAADALAIAVCHA 155
           +Q+  M+K L+  S   K  D  DA+A+A+ HA
Sbjct: 145 EQVAFMVKRLLGLSKDIKPLDITDAIAVALTHA 177


>gi|332756764|gb|EGJ87111.1| crossover junction endodeoxyribonuclease RuvC [Shigella flexneri
           4343-70]
          Length = 136

 Score = 80.5 bits (197), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 37/90 (41%), Positives = 61/90 (67%)

Query: 45  LAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVS 104
           L  RL  +Y G+T++I  ++P+  A+EQVF+ K+A + LKLGQAR +AI++     +PV 
Sbjct: 4   LPSRLKLIYAGVTEIITQFQPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVF 63

Query: 105 EYAPNTIKKAVIGVGHGDKKQIHMMLKMLM 134
           EYA   +K+ V+G+G  +K Q+  M++ L+
Sbjct: 64  EYAARQVKQTVVGMGSAEKSQVQHMVRTLL 93


>gi|57236914|ref|YP_179867.1| Holliday junction resolvase [Campylobacter jejuni RM1221]
 gi|73621850|sp|Q5HS68|RUVC_CAMJR RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|57165718|gb|AAW34497.1| crossover junction endodeoxyribonuclease RuvC [Campylobacter jejuni
           RM1221]
 gi|284926914|gb|ADC29266.1| crossover junction endodeoxyribonuclease [Campylobacter jejuni
           subsp. jejuni IA3902]
          Length = 160

 Score = 80.5 bits (197), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 49/153 (32%), Positives = 79/153 (51%), Gaps = 2/153 (1%)

Query: 4   SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +++I+GIDPG R  G+ I++        + +G ++     +L +++ +L EGL  + KN 
Sbjct: 2   NLKILGIDPGSRNCGYAIIEANKGKNILIEAG-LIKIKPSTLQYQITELCEGLDLIFKNH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
             +E A+E +F   +    LKL Q R    L         +EY P  +KKAV G     K
Sbjct: 61  SFDEVAIEDIFFAYNPKTVLKLAQFRGALSLKILQIHGDFAEYTPLQVKKAVTGKAKATK 120

Query: 124 KQIHMMLKMLMPESF-FKGKDAADALAIAVCHA 155
           +Q+  M+K L+  S   K  D  DA+A+A+ HA
Sbjct: 121 EQVAFMVKRLLGLSKDIKPLDITDAIAVALTHA 153


>gi|119487876|ref|ZP_01621373.1| Holliday junction resolvase [Lyngbya sp. PCC 8106]
 gi|119455452|gb|EAW36590.1| Holliday junction resolvase [Lyngbya sp. PCC 8106]
          Length = 168

 Score = 80.5 bits (197), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 42/128 (32%), Positives = 72/128 (56%), Gaps = 7/128 (5%)

Query: 6   RIIGIDPGLRRTGWGIV------DVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDV 59
           RIIG DPGL   G+G++      +  G  +  +  G I +   Q +  RLC +YE L  +
Sbjct: 4   RIIGFDPGLATLGFGVIHCQNKRERGGYPVSLIDFGVIKTPAHQEMGKRLCTIYEDLHTL 63

Query: 60  IKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVG 119
           I+ ++P+ A  E++F  +    T+ L QAR I +L  A  +IP+ E++P  +K+A+ G G
Sbjct: 64  IEQFKPDLAVAEKLFFYRMG-NTISLAQARGILMLVLAQEKIPLVEFSPPQVKQALTGYG 122

Query: 120 HGDKKQIH 127
           + +K ++ 
Sbjct: 123 NANKVEVQ 130


>gi|295396080|ref|ZP_06806263.1| crossover junction endoribonuclease subunit C [Brevibacterium
           mcbrellneri ATCC 49030]
 gi|294971021|gb|EFG46913.1| crossover junction endoribonuclease subunit C [Brevibacterium
           mcbrellneri ATCC 49030]
          Length = 198

 Score = 80.5 bits (197), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 54/158 (34%), Positives = 87/158 (55%), Gaps = 2/158 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +RI+G+DPGL R G G++D         V+   I +  + S   RL ++ +     + N+
Sbjct: 1   MRILGVDPGLTRLGLGVIDAGRARQARMVAVDVIRTPSQDSSDVRLGRIADAFDTWLDNY 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RP+  ++E++F   D    +   QA  + +   A   IPV+ + P+ +K AV G G  DK
Sbjct: 61  RPDVVSIERIFARNDVSTIMGTAQASGLTMGLAARRGIPVAMHTPSEVKAAVTGNGRADK 120

Query: 124 KQI-HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           KQ+ HM+ ++L  +S  K  DAADALA+A+CH +   S
Sbjct: 121 KQVTHMVTRILKLDSPPKPADAADALALAICHLWRGAS 158


>gi|281358768|ref|ZP_06245244.1| crossover junction endodeoxyribonuclease RuvC [Victivallis vadensis
           ATCC BAA-548]
 gi|281314795|gb|EFA98832.1| crossover junction endodeoxyribonuclease RuvC [Victivallis vadensis
           ATCC BAA-548]
          Length = 169

 Score = 80.1 bits (196), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 85/151 (56%), Gaps = 2/151 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAG-DNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           I+GIDP +R TG+G++      +L  +  G I +  +   +  L +L  G+ ++++ + P
Sbjct: 3   ILGIDPAIRTTGYGVIRTDSLSHLEILDCGVIANSPKLPHSECLRRLAGGIRELVQAFHP 62

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
           + A++E+ F+ ++A   + LG AR   + +   + +P   Y+P T K+A +G G   K+Q
Sbjct: 63  DYASIEEPFMGRNASTAIILGMARGGILTALVESGVPTYAYSPKTAKRAAVGTGMATKEQ 122

Query: 126 IHMMLKMLMPESFFK-GKDAADALAIAVCHA 155
           I ++L   +     +   D+ DALA+A+CHA
Sbjct: 123 IAILLAAELGIEIERIPLDSTDALALAICHA 153


>gi|218563316|ref|YP_002345096.1| Holliday junction resolvase [Campylobacter jejuni subsp. jejuni
           NCTC 11168]
 gi|20978756|sp|Q9PLU8|RUVC_CAMJE RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|112361023|emb|CAL35824.1| crossover junction endodeoxyribonuclease [Campylobacter jejuni
           subsp. jejuni NCTC 11168]
          Length = 160

 Score = 80.1 bits (196), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 49/153 (32%), Positives = 79/153 (51%), Gaps = 2/153 (1%)

Query: 4   SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +++I+GIDPG R  G+ I++        + +G ++     +L +++ +L EGL  + KN 
Sbjct: 2   NLKILGIDPGSRNCGYAIIEADKGKNILIEAG-LIKIKPSTLQYQITELCEGLDLIFKNH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
             +E A+E +F   +    LKL Q R    L         +EY P  +KKAV G     K
Sbjct: 61  SFDEVAIEDIFFAYNPKTVLKLAQFRGALSLKILQIHGDFAEYTPLQVKKAVTGKAKATK 120

Query: 124 KQIHMMLKMLMPESF-FKGKDAADALAIAVCHA 155
           +Q+  M+K L+  S   K  D  DA+A+A+ HA
Sbjct: 121 EQVAFMVKRLLGLSKDIKPLDITDAIAVALTHA 153


>gi|87302129|ref|ZP_01084954.1| Holliday junction resolvase RuvC [Synechococcus sp. WH 5701]
 gi|87283054|gb|EAQ75010.1| Holliday junction resolvase RuvC [Synechococcus sp. WH 5701]
          Length = 153

 Score = 80.1 bits (196), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 70/122 (57%), Gaps = 2/122 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGL R G+G+++  G     +  G I +        RL ++   L  +++ W 
Sbjct: 1   MRILGIDPGLARVGYGLIE-TGPPQRLLDCGMIRTEAGTPEGERLVEIARDLRWLVRRWS 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           PE A+VE+ F  + +  T+ + QAR + +++ A  R+PV E+ P  IK+A+ G GH DK 
Sbjct: 60  PELASVEKFFFYRSS-TTISVVQARGVVMMTLARLRVPVVEFPPMQIKQALTGSGHADKN 118

Query: 125 QI 126
            +
Sbjct: 119 DV 120


>gi|153951955|ref|YP_001399004.1| Holliday junction resolvase [Campylobacter jejuni subsp. doylei
           269.97]
 gi|166233185|sp|A7H674|RUVC_CAMJD RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|152939401|gb|ABS44142.1| crossover junction endodeoxyribonuclease RuvC [Campylobacter jejuni
           subsp. doylei 269.97]
          Length = 160

 Score = 80.1 bits (196), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 49/153 (32%), Positives = 80/153 (52%), Gaps = 2/153 (1%)

Query: 4   SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +++I+GIDPG +  G+ I++ +      + +G ++     +L +++ +L EGL  + KN 
Sbjct: 2   NLKILGIDPGSKNCGYAIIERSKGKNILIEAG-LIKIKPSTLQYQITELCEGLDLIFKNH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
             +E A+E +F   +    LKL Q R    L         +EY P  +KKAV G     K
Sbjct: 61  SFDEVAIEDIFFAYNPKTVLKLAQFRGALSLKILQIHGDFAEYTPLQVKKAVTGKAKATK 120

Query: 124 KQIHMMLKMLMPESF-FKGKDAADALAIAVCHA 155
           +Q+  M+K L+  S   K  D  DA+AIA+ HA
Sbjct: 121 EQVAFMVKRLLGLSKDIKPLDITDAIAIALTHA 153


>gi|88856267|ref|ZP_01130927.1| Holliday junction resolvase [marine actinobacterium PHSC20C1]
 gi|88814586|gb|EAR24448.1| Holliday junction resolvase [marine actinobacterium PHSC20C1]
          Length = 201

 Score = 80.1 bits (196), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 71/132 (53%), Gaps = 1/132 (0%)

Query: 4   SIRIIGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
           ++R+IGIDPGL R G G+VDVA D     V  G + +    +L  RL  + EG+  VI  
Sbjct: 2   ALRVIGIDPGLTRCGIGVVDVAADRRATLVHVGVVRTPPEMALEERLRHIGEGIDAVIAE 61

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
           + P + A+E+VF   +    +   QA  +A+   A   I V+ + P  +K A+ G G  +
Sbjct: 62  YAPHQLALERVFAQLNVSTVMGTAQASGVAMYVAAQRGIAVTMHTPTEVKLAITGYGGAE 121

Query: 123 KKQIHMMLKMLM 134
           KKQ+  M+  ++
Sbjct: 122 KKQVGAMVARVL 133


>gi|157415948|ref|YP_001483204.1| Holliday junction resolvase [Campylobacter jejuni subsp. jejuni
           81116]
 gi|187611412|sp|A8FP40|RUVC_CAMJ8 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|157386912|gb|ABV53227.1| crossover junction endodeoxyribonuclease RuvC [Campylobacter jejuni
           subsp. jejuni 81116]
          Length = 158

 Score = 80.1 bits (196), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/152 (32%), Positives = 78/152 (51%), Gaps = 2/152 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++I+GIDPG R  G+ I++        + +G ++     +L +++ +L EGL  + KN  
Sbjct: 1   MKILGIDPGSRNCGYAIIEANKGKNILIEAG-LIKIKPNTLQYQITELCEGLDLIFKNHS 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
            +E A+E +F   +    LKL Q R    L         +EY P  +KKAV G     K+
Sbjct: 60  FDEVAIEDIFFAYNPKTVLKLAQFRGALSLKILQIHGDFAEYTPLQVKKAVTGKAKATKE 119

Query: 125 QIHMMLKMLMPESF-FKGKDAADALAIAVCHA 155
           Q+  M+K L+  S   K  D  DA+A+A+ HA
Sbjct: 120 QVAFMVKRLLGLSKDIKPLDITDAIAVALTHA 151


>gi|160947138|ref|ZP_02094305.1| hypothetical protein PEPMIC_01070 [Parvimonas micra ATCC 33270]
 gi|158446272|gb|EDP23267.1| hypothetical protein PEPMIC_01070 [Parvimonas micra ATCC 33270]
          Length = 182

 Score = 80.1 bits (196), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 43/128 (33%), Positives = 69/128 (53%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I G+DPG+   G+GI++  G+ +  +  G I +     L  RL  + E L  +I+    +
Sbjct: 21  IFGLDPGIAIVGYGIIEAIGNRVRLIDYGVIETKAGIPLPDRLKIIDEELNRLIELHNVD 80

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E++F NK+    + + QAR + ILS     I   EY P  +K+A+ G G  DKKQ+
Sbjct: 81  ELAIEELFFNKNVKTVINVAQARGVEILSFIKKNILAYEYTPLQVKQAITGYGRADKKQM 140

Query: 127 HMMLKMLM 134
              +KM+ 
Sbjct: 141 QESVKMIF 148


>gi|121612651|ref|YP_001001372.1| Holliday junction resolvase [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|166233186|sp|A1W1Y1|RUVC_CAMJJ RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|121504188|gb|EAQ71982.2| crossover junction endodeoxyribonuclease RuvC [Campylobacter jejuni
           subsp. jejuni 81-176]
          Length = 160

 Score = 80.1 bits (196), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/153 (32%), Positives = 79/153 (51%), Gaps = 2/153 (1%)

Query: 4   SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +++I+GIDPG R  G+ I++        + +G ++     +L +++ +L EGL  + KN 
Sbjct: 2   NLKILGIDPGSRNCGYAIMEANKGKNILIEAG-LIKIKPSTLQYQITELCEGLDLIFKNH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
             +E A+E +F   +    LKL Q R    L         +EY P  +KKAV G     K
Sbjct: 61  SFDEVAIEDIFFAYNPKTVLKLAQFRGALSLKILQIHGDFAEYTPLQVKKAVTGKAKATK 120

Query: 124 KQIHMMLKMLMPESF-FKGKDAADALAIAVCHA 155
           +Q+  M+K L+  S   K  D  DA+A+A+ HA
Sbjct: 121 EQVAFMVKRLLGLSKDIKPLDITDAIAVALTHA 153


>gi|271967391|ref|YP_003341587.1| Crossover junction endodeoxyribonuclease [Streptosporangium roseum
           DSM 43021]
 gi|270510566|gb|ACZ88844.1| Crossover junction endodeoxyribonuclease [Streptosporangium roseum
           DSM 43021]
          Length = 200

 Score = 79.7 bits (195), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/159 (33%), Positives = 87/159 (54%), Gaps = 2/159 (1%)

Query: 4   SIRIIGIDPGLRRTGWGIVD-VAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
            +R++G+DPGL R G G V+   G  L  V  G + +     +  RL  +  G+   +  
Sbjct: 5   ELRVMGVDPGLTRCGLGAVEGRPGAPLSLVKVGVVRTPADDEIGARLVAIEAGIEQWLDE 64

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
            RP+  AVE+VF   +    +   QA A+AIL  +   +PV+ + P+ +K A+ G G  D
Sbjct: 65  IRPDAVAVERVFAQHNLRTVMGTAQASAVAILCASRRGLPVAMHTPSEVKAAITGSGTAD 124

Query: 123 KKQIHMML-KMLMPESFFKGKDAADALAIAVCHAYHANS 160
           K+Q+  M+ ++L  ++  K  DAADALA+A+CH +   +
Sbjct: 125 KQQVGTMVTRLLRLDAMPKPADAADALALAICHVWRGGA 163


>gi|57504596|ref|ZP_00370708.1| crossover junction endodeoxyribonuclease RuvC [Campylobacter coli
           RM2228]
 gi|305432572|ref|ZP_07401733.1| crossover junction endoribonuclease subunit C [Campylobacter coli
           JV20]
 gi|57019491|gb|EAL56185.1| crossover junction endodeoxyribonuclease RuvC [Campylobacter coli
           RM2228]
 gi|304444283|gb|EFM36935.1| crossover junction endoribonuclease subunit C [Campylobacter coli
           JV20]
 gi|315059175|gb|ADT73504.1| Crossover junction endodeoxyribonuclease RuvC [Campylobacter jejuni
           subsp. jejuni S3]
          Length = 158

 Score = 79.7 bits (195), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/152 (32%), Positives = 78/152 (51%), Gaps = 2/152 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++I+GIDPG R  G+ I++        + +G ++     +L +++ +L EGL  + KN  
Sbjct: 1   MKILGIDPGSRNCGYAIIEANKGKNILIEAG-LIKIKPSTLQYQITELCEGLDLIFKNHS 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
            +E A+E +F   +    LKL Q R    L         +EY P  +KKAV G     K+
Sbjct: 60  FDEVAIEDIFFAYNPKTVLKLAQFRGALSLKILQIHGDFAEYTPLQVKKAVTGKAKATKE 119

Query: 125 QIHMMLKMLMPESF-FKGKDAADALAIAVCHA 155
           Q+  M+K L+  S   K  D  DA+A+A+ HA
Sbjct: 120 QVAFMVKRLLGLSKDIKPLDITDAIAVALTHA 151


>gi|315931306|gb|EFV10275.1| crossover junction endodeoxyribonuclease RuvC [Campylobacter jejuni
           subsp. jejuni 327]
          Length = 158

 Score = 79.7 bits (195), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/152 (32%), Positives = 78/152 (51%), Gaps = 2/152 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++I+GIDPG R  G+ I++        + +G ++     +L +++ +L EGL  + KN  
Sbjct: 1   MKILGIDPGSRNCGYAIIEADKGKNILIEAG-LIKIKPSTLQYQITELCEGLDLIFKNHS 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
            +E A+E +F   +    LKL Q R    L         +EY P  +KKAV G     K+
Sbjct: 60  FDEVAIEDIFFAYNPKTVLKLAQFRGALSLKILQIHGDFAEYTPLQVKKAVTGKAKATKE 119

Query: 125 QIHMMLKMLMPESF-FKGKDAADALAIAVCHA 155
           Q+  M+K L+  S   K  D  DA+A+A+ HA
Sbjct: 120 QVAFMVKRLLGLSKDIKPLDITDAIAVALTHA 151


>gi|225872209|ref|YP_002753664.1| crossover junction endodeoxyribonuclease RuvC [Acidobacterium
           capsulatum ATCC 51196]
 gi|254767452|sp|C1F130|RUVC_ACIC5 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|225791927|gb|ACO32017.1| crossover junction endodeoxyribonuclease RuvC [Acidobacterium
           capsulatum ATCC 51196]
          Length = 171

 Score = 79.7 bits (195), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/165 (40%), Positives = 96/165 (58%), Gaps = 10/165 (6%)

Query: 5   IRIIGIDPGLRRTGWGIVDV-------AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLT 57
           +RI GID G   TG+GIV+           +L  ++ G I    + +LA RL  ++  L 
Sbjct: 1   MRIFGIDCGSEITGYGIVECPDGTPRSGQPDLRLIAFGGIRPAKKLTLAERLAFVHRELL 60

Query: 58  DVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIG 117
             +   +P+  AVE+VF + +A + LKLG  R +A+L+ A A +P++EYAP TIK  V G
Sbjct: 61  TQLAAHQPDLVAVEEVFYSVNAKSALKLGHVRGVALLAAATAGLPIAEYAPLTIKSTVTG 120

Query: 118 VGHGDKKQIHMMLKML--MPESFFKGKDAADALAIAVCHAYHANS 160
            G   K+Q+  M+  L  MPE   +  DAADALAIA+CH +HA +
Sbjct: 121 YGLAQKEQVQFMVARLLHMPEP-PEPADAADALAIAICHIHHAQT 164


>gi|154175236|ref|YP_001409235.1| Holliday junction resolvase [Campylobacter curvus 525.92]
 gi|166231592|sp|A7H193|RUVC_CAMC5 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|112803505|gb|EAU00849.1| crossover junction endodeoxyribonuclease RuvC [Campylobacter curvus
           525.92]
          Length = 157

 Score = 79.7 bits (195), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 78/152 (51%), Gaps = 2/152 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++I+GIDPG R  G+ I++        + +G ++     +L +++ +L EGL  + KN +
Sbjct: 1   MKILGIDPGSRNCGYAIIEKNVRKTALIEAG-LIKIKPNTLQYQITELCEGLDVIFKNHK 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
            +E A+E +F   +    LKL Q R    L         +EY P  +KKAV G     K+
Sbjct: 60  FDEVAIEDIFFAYNPKTVLKLAQFRGALSLKILQLHGDFAEYTPLQVKKAVTGKAKAQKE 119

Query: 125 QIHMMLKMLMP-ESFFKGKDAADALAIAVCHA 155
           Q+  M+K ++      K  D  DA+A+A+ HA
Sbjct: 120 QVAFMVKKILGITKEIKPLDITDAIAVALTHA 151


>gi|254391314|ref|ZP_05006518.1| crossover junction endodeoxyribonuclease ruvC [Streptomyces
           clavuligerus ATCC 27064]
 gi|197705005|gb|EDY50817.1| crossover junction endodeoxyribonuclease ruvC [Streptomyces
           clavuligerus ATCC 27064]
          Length = 196

 Score = 79.3 bits (194), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/153 (37%), Positives = 85/153 (55%), Gaps = 2/153 (1%)

Query: 10  IDPGLRRTGWGIVD-VAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEA 68
           +DPGL R G G+V+  AG  L  +  G + S     LA RL  + +GL   +  +RPE  
Sbjct: 1   MDPGLTRCGVGVVEGEAGRPLAMLGVGVVRSSPDADLAGRLVAIEQGLERWLDEYRPERV 60

Query: 69  AVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI-H 127
           AVE+VF   +    +   QA A+A+L      IPV  + P+ +K AV G G  DK Q+  
Sbjct: 61  AVERVFSQHNVRTVMGTAQASAVAMLCAGRRGIPVVLHTPSEVKAAVTGTGRADKAQVGA 120

Query: 128 MMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           M+ ++L  ++  +  DAADALA+A+CH + A +
Sbjct: 121 MVTRLLRLDAPPRPADAADALALAICHIWRAPA 153


>gi|153808536|ref|ZP_01961204.1| hypothetical protein BACCAC_02831 [Bacteroides caccae ATCC 43185]
 gi|149128858|gb|EDM20075.1| hypothetical protein BACCAC_02831 [Bacteroides caccae ATCC 43185]
          Length = 169

 Score = 79.3 bits (194), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/141 (34%), Positives = 80/141 (56%), Gaps = 5/141 (3%)

Query: 18  GWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNK 77
           G+GI+ + G     V+ G I      +   +L  ++E +  +I+++ P+E A+E  F  K
Sbjct: 2   GYGILRIKGTKPEMVAMGIIDLRKFANHYLKLRHIHERVLSIIESYLPDELAIEAPFFGK 61

Query: 78  DAVATLKLGQARAIAILSPALAR-IPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLM-- 134
           +  + LKLG+A+ +A ++ AL+R IP++EYAP  IK A+ G G   K+Q+  ML+ ++  
Sbjct: 62  NVQSMLKLGRAQGVA-MAVALSRDIPITEYAPLKIKMAITGNGQASKEQVADMLQRMLHF 120

Query: 135 -PESFFKGKDAADALAIAVCH 154
             E      DA D LA A CH
Sbjct: 121 SKEDMPTFMDATDGLAAAYCH 141


>gi|283956178|ref|ZP_06373663.1| crossover junction endodeoxyribonuclease RuvC [Campylobacter jejuni
           subsp. jejuni 1336]
 gi|283792332|gb|EFC31116.1| crossover junction endodeoxyribonuclease RuvC [Campylobacter jejuni
           subsp. jejuni 1336]
          Length = 158

 Score = 79.3 bits (194), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/152 (31%), Positives = 79/152 (51%), Gaps = 2/152 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++I+GIDPG +  G+ I++ +      + +G ++     +L +++ +L EGL  + KN  
Sbjct: 1   MKILGIDPGSKNCGYAIIEASKGKNILIEAG-LIKIKPSTLQYQITELCEGLDLIFKNHS 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
            +E A+E +F   +    LKL Q R    L         +EY P  +KKAV G     K+
Sbjct: 60  FDEVAIEDIFFAYNPKTVLKLAQFRGALSLKILQIHGDFAEYTPLQVKKAVTGKAKATKE 119

Query: 125 QIHMMLKMLMPESF-FKGKDAADALAIAVCHA 155
           Q+  M+K L+  S   K  D  DA+A+A+ HA
Sbjct: 120 QVAFMVKRLLGLSKDIKPLDITDAIAVALTHA 151


>gi|291286412|ref|YP_003503228.1| crossover junction endodeoxyribonuclease RuvC [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290883572|gb|ADD67272.1| crossover junction endodeoxyribonuclease RuvC [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 158

 Score = 79.3 bits (194), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/151 (31%), Positives = 78/151 (51%), Gaps = 1/151 (0%)

Query: 8   IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEE 67
           +G+DPGL  TG GIV V    + +V+   + +  +  L  RL  +  G+   +  ++P  
Sbjct: 1   MGVDPGLNCTGIGIVQVWPGKVEYVAHEVVRTDSKDPLPVRLGVICGGIRSALAEYKPSC 60

Query: 68  AAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIH 127
           +AVE VF + +  + + LGQ R   I +     I V E+    IKKAV+G G  DK+Q+ 
Sbjct: 61  SAVEDVFYSVNVKSAMLLGQTRGAIIATLLAGDIEVREFTALQIKKAVVGYGKADKQQVK 120

Query: 128 MMLKMLMPESFFKGK-DAADALAIAVCHAYH 157
            M+++L+         D  DALA  +C  ++
Sbjct: 121 KMVEVLLGRKMGNVPLDVTDALACGICLGFN 151


>gi|212550497|ref|YP_002308814.1| Holliday junction resolvase [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|212548735|dbj|BAG83403.1| crossover junction endodeoxyribonuclease RuvC [Candidatus
           Azobacteroides pseudotrichonymphae genomovar. CFP2]
          Length = 190

 Score = 79.3 bits (194), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 81/165 (49%), Gaps = 7/165 (4%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           MR+   I+G+DPG    G+G++ ++  N   +          +S   RL  ++  + ++I
Sbjct: 1   MREERIILGVDPGTSVMGYGLIRISEGNPFLLKMEVFKLNKSESHYKRLLHIFNKILELI 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             + P E A+E  F+ ++  + LKLG+ + + I +     I V EY P  IK AV G G 
Sbjct: 61  DEFFPNELAIESPFLGQNVQSMLKLGRVQGVVIAAAMSRSISVYEYTPLKIKMAVTGNGR 120

Query: 121 GDKKQIHMMLKMLMPESFFKGK-------DAADALAIAVCHAYHA 158
             K+Q+  +L+  +  S  + +       DA D LA A+CH +  
Sbjct: 121 ASKEQVAGILRNYLRLSKDRTQLDEYLSLDATDGLATALCHFFQG 165


>gi|167006264|ref|ZP_02272022.1| Holliday junction resolvase [Campylobacter jejuni subsp. jejuni
           81-176]
          Length = 158

 Score = 79.0 bits (193), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/152 (32%), Positives = 78/152 (51%), Gaps = 2/152 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++I+GIDPG R  G+ I++        + +G ++     +L +++ +L EGL  + KN  
Sbjct: 1   MKILGIDPGSRNCGYAIMEANKGKNILIEAG-LIKIKPSTLQYQITELCEGLDLIFKNHS 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
            +E A+E +F   +    LKL Q R    L         +EY P  +KKAV G     K+
Sbjct: 60  FDEVAIEDIFFAYNPKTVLKLAQFRGALSLKILQIHGDFAEYTPLQVKKAVTGKAKATKE 119

Query: 125 QIHMMLKMLMPESF-FKGKDAADALAIAVCHA 155
           Q+  M+K L+  S   K  D  DA+A+A+ HA
Sbjct: 120 QVAFMVKRLLGLSKDIKPLDITDAIAVALTHA 151


>gi|254456897|ref|ZP_05070325.1| crossover junction endodeoxyribonuclease RuvC [Campylobacterales
           bacterium GD 1]
 gi|207085689|gb|EDZ62973.1| crossover junction endodeoxyribonuclease RuvC [Campylobacterales
           bacterium GD 1]
          Length = 158

 Score = 79.0 bits (193), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 78/150 (52%), Gaps = 2/150 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R  G+ ++ +    +  + +G ++    + L F++ Q+ EG+  + K    +
Sbjct: 3   ILGIDPGTRNMGYALISLEKGKISLIEAG-LIKMKAEELQFQIPQMAEGIDTIFKRHNID 61

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E +F   +   T+KL Q R   +L          EY    +KKA+ G     K+Q+
Sbjct: 62  EVAMEDIFYAHNPATTIKLAQFRGAIMLKLLEVHGKFYEYTALQVKKALTGKAKAGKEQV 121

Query: 127 HMMLKMLMP-ESFFKGKDAADALAIAVCHA 155
             M+K+L+  +   K  D +DA+A+A+ H+
Sbjct: 122 AYMVKILLNIKKEIKPLDISDAMAVAITHS 151


>gi|113477103|ref|YP_723164.1| Holliday junction resolvase [Trichodesmium erythraeum IMS101]
 gi|123351979|sp|Q10YI3|RUVC_TRIEI RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|110168151|gb|ABG52691.1| Holliday junction endonuclease RuvC [Trichodesmium erythraeum
           IMS101]
          Length = 163

 Score = 79.0 bits (193), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/128 (34%), Positives = 70/128 (54%), Gaps = 8/128 (6%)

Query: 7   IIGIDPGLRRTGWGIVDVAG-------DNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDV 59
           I+G+DPGL   G+G++           D+   V  G I +  +Q +  RL  +YE L  +
Sbjct: 5   ILGLDPGLAVLGFGLIKCIYNSKTEKIDSTSLVDFGVIKTTKKQEMGQRLVTIYEDLHTI 64

Query: 60  IKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVG 119
           + N++P+ AA E++F  +    T+ + QAR I IL+ A   IP+ E+ P  IK+AV G G
Sbjct: 65  LNNFKPDLAATEKLFFYRMG-NTILVAQARGILILALAQNEIPLIEFTPAQIKQAVTGYG 123

Query: 120 HGDKKQIH 127
           + DK  + 
Sbjct: 124 NADKYDVQ 131


>gi|289641362|ref|ZP_06473527.1| crossover junction endodeoxyribonuclease RuvC [Frankia symbiont of
           Datisca glomerata]
 gi|289508824|gb|EFD29758.1| crossover junction endodeoxyribonuclease RuvC [Frankia symbiont of
           Datisca glomerata]
          Length = 177

 Score = 79.0 bits (193), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 68/129 (52%), Gaps = 1/129 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           ++G+DPGL R G G+VD   G     V  G + +     +A RL  L  G+ + +    P
Sbjct: 3   VLGVDPGLTRCGLGVVDGGPGQQTSLVEVGVLRTPAADDVAARLWALERGVGEWLDRHHP 62

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
           +  AVE+VF   +    +   QA A+AI+S A   +PV+ Y P+ +K +V G G  DK Q
Sbjct: 63  DAVAVERVFSQANVRTVMGTAQAGAVAIVSAARRGLPVALYTPSEVKASVSGSGRADKTQ 122

Query: 126 IHMMLKMLM 134
           +  M+  L+
Sbjct: 123 VTFMVSRLL 131


>gi|238063869|ref|ZP_04608578.1| crossover junction endodeoxyribonuclease ruvC [Micromonospora sp.
           ATCC 39149]
 gi|237885680|gb|EEP74508.1| crossover junction endodeoxyribonuclease ruvC [Micromonospora sp.
           ATCC 39149]
          Length = 175

 Score = 79.0 bits (193), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/168 (36%), Positives = 92/168 (54%), Gaps = 4/168 (2%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIV-SCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G G+V+      C + +  +V +   + L  RL  L   LTD++   
Sbjct: 1   MRVLGVDPGLTRCGVGVVEGVPGRPCTLLAYYVVYTDPGEDLPLRLLHLDRSLTDLVAEH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RP+  AVE+VF   +    +   QA  IA+L+ A A +PV  Y P+ +K A+ G G  DK
Sbjct: 61  RPDAVAVERVFSQHNVRTVMGTAQASGIAVLAGARAGLPVQTYTPSEVKAAITGSGQADK 120

Query: 124 KQIHMMLKML--MPESFFKGKDAADALAIAVCHAYHANSGYYKIASQD 169
            Q+  M+  L  +PE   K  DAADALA+A+CH +   +     A+ D
Sbjct: 121 AQMTTMVTRLLRLPEP-PKPADAADALALAICHVWRGGTRSKLAAAAD 167


>gi|87124817|ref|ZP_01080665.1| Holliday junction resolvase RuvC [Synechococcus sp. RS9917]
 gi|86167696|gb|EAQ68955.1| Holliday junction resolvase RuvC [Synechococcus sp. RS9917]
          Length = 160

 Score = 79.0 bits (193), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 77/128 (60%), Gaps = 7/128 (5%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSC--VR----QSLAFRLCQLYEGLTD 58
           +RI+G+DPGL R G+G+++V   +     +  ++ C  +R    +S   R+ ++   L  
Sbjct: 1   MRILGLDPGLARVGYGLIEVTAGSGVSAGTQRMLDCGMIRTDPGRSEGERMVEIAHDLRL 60

Query: 59  VIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGV 118
           +I++W+P+ AAVE+ F  + +  T+ + QAR + +++ A  RIP  E+ P  IK+A+ G 
Sbjct: 61  LIRSWKPDLAAVEKFFFYRSST-TIAVVQARGVLMMTLARFRIPAVEFPPMQIKQALTGH 119

Query: 119 GHGDKKQI 126
           GH +K ++
Sbjct: 120 GHAEKDEV 127


>gi|87308914|ref|ZP_01091052.1| crossover junction endodeoxyribonuclease ruvC [Blastopirellula
           marina DSM 3645]
 gi|87288257|gb|EAQ80153.1| crossover junction endodeoxyribonuclease ruvC [Blastopirellula
           marina DSM 3645]
          Length = 147

 Score = 79.0 bits (193), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 80/142 (56%), Gaps = 4/142 (2%)

Query: 21  IVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAV 80
           +++V    +  + +G +    R SL  R+ ++Y+G+ DVI   +P+  A+EQ++ + +  
Sbjct: 1   MIEVQNRRIRIIEAGVVRGKTRGSLPARVREIYDGVRDVITTLQPQTMAIEQLYSHYERP 60

Query: 81  AT-LKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLK--MLMPES 137
            T + +G AR +  L+   A +P+  Y+   IKK + G G   K Q+ + ++  + +PE 
Sbjct: 61  KTAIIMGHARGVLCLAAEQAGMPIHHYSATQIKKLLTGSGRAPKNQVQLSVQRELSLPE- 119

Query: 138 FFKGKDAADALAIAVCHAYHAN 159
             +  D ADALA+A+CH Y A+
Sbjct: 120 IPEPPDVADALAVALCHYYLAS 141


>gi|29338972|gb|AAO76771.1| crossover junction endodeoxyribonuclease ruvC [Bacteroides
           thetaiotaomicron VPI-5482]
          Length = 169

 Score = 79.0 bits (193), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/141 (34%), Positives = 80/141 (56%), Gaps = 5/141 (3%)

Query: 18  GWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNK 77
           G+G++ V G     ++ G I      +   +L  ++E +  +I+++ P+E A+E  F  K
Sbjct: 2   GYGVLRVKGTKPEMIAMGIIDLRKFANHYLKLRHIHERVLSIIESYLPDELAIEAPFFGK 61

Query: 78  DAVATLKLGQARAIAILSPALAR-IPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLM-- 134
           +  + LKLG+A+ +A ++ AL+R IP++EYAP  IK A+ G G   K+Q+  ML+ ++  
Sbjct: 62  NVQSMLKLGRAQGVA-MAVALSRDIPITEYAPLKIKMAITGNGQASKEQVADMLQRMLHF 120

Query: 135 -PESFFKGKDAADALAIAVCH 154
             E      DA D LA A CH
Sbjct: 121 PKEEMPTFMDATDGLAAAYCH 141


>gi|313143576|ref|ZP_07805769.1| crossover junction endodeoxyribonuclease ruvC [Helicobacter cinaedi
           CCUG 18818]
 gi|313128607|gb|EFR46224.1| crossover junction endodeoxyribonuclease ruvC [Helicobacter cinaedi
           CCUG 18818]
          Length = 171

 Score = 78.6 bits (192), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 78/155 (50%), Gaps = 6/155 (3%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSS-----GTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           I+GIDPG R  G+ I+ +A  N+    S       I+    +SL  ++ +  EG+  V+K
Sbjct: 4   ILGIDPGSRNCGYAIIQMADANMHLKGSLKLIEAGIIKIKERSLQHQIVEFVEGIDMVLK 63

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
               +E A+E +F   +  + +KL Q R    L         +EY P  +KKA+ G G  
Sbjct: 64  LHHIDEVAIEDIFFAYNPKSVIKLAQFRGALSLKILQEIGNFAEYTPLQVKKAITGNGKA 123

Query: 122 DKKQIHMMLKMLMP-ESFFKGKDAADALAIAVCHA 155
           DK Q+  M+K ++  +   K  D  DALAIA+ H+
Sbjct: 124 DKAQVAFMVKKILGIKGEIKPLDITDALAIAITHS 158


>gi|297517034|ref|ZP_06935420.1| Holliday junction resolvase [Escherichia coli OP50]
          Length = 90

 Score = 78.6 bits (192), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 40/88 (45%), Positives = 60/88 (68%), Gaps = 1/88 (1%)

Query: 7  IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
          I+GIDPG R TG+G++   G  L ++ SG I + V   L  RL  +Y G+T++I  ++P+
Sbjct: 4  ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKV-DDLPSRLKLIYAGVTEIITQFQPD 62

Query: 67 EAAVEQVFVNKDAVATLKLGQARAIAIL 94
            A+EQVF+ K+A + LKLGQAR +AI+
Sbjct: 63 YFAIEQVFMAKNADSALKLGQARGVAIV 90


>gi|224437106|ref|ZP_03658087.1| Holliday junction resolvase [Helicobacter cinaedi CCUG 18818]
          Length = 170

 Score = 78.6 bits (192), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 78/155 (50%), Gaps = 6/155 (3%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSS-----GTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           I+GIDPG R  G+ I+ +A  N+    S       I+    +SL  ++ +  EG+  V+K
Sbjct: 3   ILGIDPGSRNCGYAIIQMADANMHLKGSLKLIEAGIIKIKERSLQHQIVEFVEGIDMVLK 62

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
               +E A+E +F   +  + +KL Q R    L         +EY P  +KKA+ G G  
Sbjct: 63  LHHIDEVAIEDIFFAYNPKSVIKLAQFRGALSLKILQEIGNFAEYTPLQVKKAITGNGKA 122

Query: 122 DKKQIHMMLKMLMP-ESFFKGKDAADALAIAVCHA 155
           DK Q+  M+K ++  +   K  D  DALAIA+ H+
Sbjct: 123 DKAQVAFMVKKILGIKGEIKPLDITDALAIAITHS 157


>gi|328950609|ref|YP_004367944.1| Crossover junction endodeoxyribonuclease ruvC [Marinithermus
           hydrothermalis DSM 14884]
 gi|328450933|gb|AEB11834.1| Crossover junction endodeoxyribonuclease ruvC [Marinithermus
           hydrothermalis DSM 14884]
          Length = 163

 Score = 78.6 bits (192), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 84/157 (53%), Gaps = 3/157 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           ++G+DPG+   G G+V+  G    F+    + +   +    R+ ++Y  +  V++ +RPE
Sbjct: 3   VLGVDPGITNMGLGVVEGDGPKARFLHGELVRTRHGEPAPKRVGRIYRAVRGVLEAYRPE 62

Query: 67  EAAVE-QVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
             AVE Q F  ++ +A  ++G A    +++   A +PV  Y P  +K+A++G G  DK Q
Sbjct: 63  AVAVEGQYFYRQNELA-YRVGWAMGAVLVAADEAGLPVFAYGPMQVKQALVGTGRADKAQ 121

Query: 126 IHMMLKMLMP-ESFFKGKDAADALAIAVCHAYHANSG 161
           +  M++ ++      K    ADALAIA+ H  H  +G
Sbjct: 122 VAYMVRAILNLREAPKVSHVADALAIALTHLAHLRTG 158


>gi|149194731|ref|ZP_01871826.1| Holliday junction resolvase [Caminibacter mediatlanticus TB-2]
 gi|149135154|gb|EDM23635.1| Holliday junction resolvase [Caminibacter mediatlanticus TB-2]
          Length = 154

 Score = 78.6 bits (192), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/152 (32%), Positives = 82/152 (53%), Gaps = 4/152 (2%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPG  R G+ I++ +   L  + +G  +    + L ++L QL EGL  +++N +
Sbjct: 1   MRILGIDPGTIRCGYAIIE-SFPKLKLIDAG-FIKITEKELQYQLSQLIEGLDLILEN-Q 57

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
            +E A+E +F   +    LKL Q R    L         +EY P  +KKAV G G   K+
Sbjct: 58  IDEVAIEDIFYAYNPKTVLKLAQFRGALSLRILQKHGFFAEYTPLQVKKAVTGNGKAKKE 117

Query: 125 QIHMMLKMLMP-ESFFKGKDAADALAIAVCHA 155
           Q+  M+K ++  +   K  D  DA+A+A+ H+
Sbjct: 118 QVAFMVKRILGIKGDIKPLDITDAIAVAITHS 149


>gi|294786920|ref|ZP_06752174.1| crossover junction endodeoxyribonuclease RuvC [Parascardovia
           denticolens F0305]
 gi|315226556|ref|ZP_07868344.1| crossover junction endoribonuclease subunit C [Parascardovia
           denticolens DSM 10105]
 gi|294485753|gb|EFG33387.1| crossover junction endodeoxyribonuclease RuvC [Parascardovia
           denticolens F0305]
 gi|315120688|gb|EFT83820.1| crossover junction endoribonuclease subunit C [Parascardovia
           denticolens DSM 10105]
          Length = 192

 Score = 78.2 bits (191), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 53/151 (35%), Positives = 80/151 (52%), Gaps = 2/151 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           I G+DPGL R G GI++      L F+    + S   Q    RL  ++ GL   +  + P
Sbjct: 3   ICGVDPGLTRCGVGIIEAGPSRRLSFIHVDVVRSDPHQPQDARLLTIFNGLCAHMDAYLP 62

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
           +  ++E+VF  ++    L   QA  +A+++ A   IPVS + P   K AV G G  DK Q
Sbjct: 63  DVVSIERVFAQENRNTVLGTAQAAGLAMVAAAQRGIPVSLHTPTEAKLAVTGNGKADKAQ 122

Query: 126 IHMML-KMLMPESFFKGKDAADALAIAVCHA 155
           +  M+ K+L   +     DAAD+LA+A+CHA
Sbjct: 123 VQTMVAKILSLNAPPSPPDAADSLALAICHA 153


>gi|323142287|ref|ZP_08077119.1| crossover junction endodeoxyribonuclease RuvC
           [Phascolarctobacterium sp. YIT 12067]
 gi|322413171|gb|EFY04058.1| crossover junction endodeoxyribonuclease RuvC
           [Phascolarctobacterium sp. YIT 12067]
          Length = 183

 Score = 78.2 bits (191), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 84/133 (63%), Gaps = 1/133 (0%)

Query: 2   RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           R  + ++GIDPG    G+G+VD+ G+ L  V  G++++        RL ++Y+ ++D+I 
Sbjct: 17  RFFMLVLGIDPGTAICGYGLVDMTGNRLRPVFYGSVLTYKDMLPELRLKKIYDDISDIID 76

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
           +++P+  ++E++F N++    + +GQAR + +L+ A   +PV E+ P  IK +V+G G  
Sbjct: 77  HFKPDLLSIEKLFFNRNVTTAIPVGQARGVVLLAAANKGLPVMEFTPMQIKLSVVGTGSA 136

Query: 122 DKKQ-IHMMLKML 133
            K+Q I+M++ +L
Sbjct: 137 TKEQVIYMVMHLL 149


>gi|300781058|ref|ZP_07090912.1| crossover junction endoribonuclease subunit C [Corynebacterium
           genitalium ATCC 33030]
 gi|300532765|gb|EFK53826.1| crossover junction endoribonuclease subunit C [Corynebacterium
           genitalium ATCC 33030]
          Length = 181

 Score = 78.2 bits (191), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 56/158 (35%), Positives = 90/158 (56%), Gaps = 2/158 (1%)

Query: 3   KSIRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           + +R++GIDPGL R G  ++    G  +  V+ G + +     LA RL +L + + + I 
Sbjct: 4   EGLRVMGIDPGLTRCGLSVIQAGKGRQVIPVAVGVVRTPSDAELAHRLLRLSQAVEEWID 63

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
           +++P+  A+E++F   +    +    A  + +L+ A   IPV  Y P+ +KKAV G G  
Sbjct: 64  DYQPDVIAMERIFERGNVSTVMHTAHAVGVMVLAAAKRDIPVHMYTPSEVKKAVSGNGRA 123

Query: 122 DKKQI-HMMLKMLMPESFFKGKDAADALAIAVCHAYHA 158
           DKKQ+  M+ ++L   +  K  DAADALAIAVCH + A
Sbjct: 124 DKKQMTSMITRILGLGAPPKPADAADALAIAVCHCWRA 161


>gi|297571392|ref|YP_003697166.1| crossover junction endodeoxyribonuclease RuvC [Arcanobacterium
           haemolyticum DSM 20595]
 gi|296931739|gb|ADH92547.1| crossover junction endodeoxyribonuclease RuvC [Arcanobacterium
           haemolyticum DSM 20595]
          Length = 206

 Score = 78.2 bits (191), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 55/161 (34%), Positives = 90/161 (55%), Gaps = 2/161 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAG-DNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +RI+GIDPGL R G  ++D AG   +  VS G   +  + +   RL  + + L + I   
Sbjct: 1   MRILGIDPGLTRCGICVLDAAGARRISLVSVGVARTDPQMAPHQRLLMISQELEETIHAH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RP+  AVE+VF   +  + +   Q   I +L+ A A +PV  ++P+ +K AV G G   K
Sbjct: 61  RPDVVAVERVFAQDNVRSVMSTAQVVGIVLLAAAKASLPVGMHSPSEVKAAVTGNGRAQK 120

Query: 124 KQIHMML-KMLMPESFFKGKDAADALAIAVCHAYHANSGYY 163
            Q+  M+ ++L  +   + KDAADA+A+A+CHA+   +  +
Sbjct: 121 IQVQTMVQRILGLDKLPRPKDAADAIAVAICHAWRGGAQDF 161


>gi|222824549|ref|YP_002576123.1| crossover junction endodeoxyribonuclease RuvC [Campylobacter lari
           RM2100]
 gi|254767464|sp|B9KE83|RUVC_CAMLR RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|222539770|gb|ACM64871.1| crossover junction endodeoxyribonuclease RuvC [Campylobacter lari
           RM2100]
          Length = 158

 Score = 78.2 bits (191), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 78/152 (51%), Gaps = 2/152 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++++GIDPG R  G+ IV+   +    + +G ++      L +++ +L EGL  + KN +
Sbjct: 1   MKVLGIDPGSRYCGYAIVEKINNKNQLIEAG-LIKIKPNDLQYQITELCEGLDLIFKNHQ 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
            +E A+E +F   +    LKL Q R    L         +EY P  +KK V G     K+
Sbjct: 60  FDEVAIEDIFFAYNPKTVLKLAQFRGALSLKILQMHGEFAEYTPLQVKKTVTGKAKATKE 119

Query: 125 QIHMMLKMLMPESF-FKGKDAADALAIAVCHA 155
           Q+  M+K L+  S   K  D  DA+A+A+ H+
Sbjct: 120 QVAFMVKRLLGISKDIKPLDITDAIAVALTHS 151


>gi|119512861|ref|ZP_01631927.1| Holliday junction resolvase [Nodularia spumigena CCY9414]
 gi|119462489|gb|EAW43460.1| Holliday junction resolvase [Nodularia spumigena CCY9414]
          Length = 163

 Score = 78.2 bits (191), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 40/129 (31%), Positives = 73/129 (56%), Gaps = 8/129 (6%)

Query: 6   RIIGIDPGLRRTGWGIV-------DVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTD 58
           RI+G+DPGL   G+G++        +   ++  V  G I +  +  +  RLC L++ L  
Sbjct: 4   RILGLDPGLAILGFGLIACSQNQAKILDTSVSMVDFGVIQTSSKMEMGQRLCTLFDDLHT 63

Query: 59  VIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGV 118
           VI   +P+  AVE++F  + + +T+ + QAR + +L+ A  ++P  E+ P  IK+A+ G 
Sbjct: 64  VISELQPDLVAVEKLFFYRMS-STILVAQARGVLMLALAQHKLPYVEFTPAQIKQALTGY 122

Query: 119 GHGDKKQIH 127
           G+ DK ++ 
Sbjct: 123 GNADKSEVQ 131


>gi|330466910|ref|YP_004404653.1| crossover junction endodeoxyribonuclease ruvc [Verrucosispora maris
           AB-18-032]
 gi|328809881|gb|AEB44053.1| crossover junction endodeoxyribonuclease ruvc [Verrucosispora maris
           AB-18-032]
          Length = 175

 Score = 78.2 bits (191), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 48/131 (36%), Positives = 70/131 (53%), Gaps = 1/131 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLC-FVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G G+V+      C  V+   I +     L  RL  L   LTD++   
Sbjct: 1   MRVLGVDPGLTRCGVGVVEGVPGRPCTLVAYYVIYTDPADELPTRLLHLDRSLTDLVAEH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RP+  AVE+VF   +    +   QA  IA+L+ A A +PV  Y P+ +K AV G G  DK
Sbjct: 61  RPDSVAVERVFSQHNVRTVMGTAQASGIAVLAGARAGLPVQTYTPSEVKAAVTGSGQADK 120

Query: 124 KQIHMMLKMLM 134
            Q+  M+  L+
Sbjct: 121 AQMTAMVTRLL 131


>gi|294790876|ref|ZP_06756034.1| crossover junction endodeoxyribonuclease RuvC [Scardovia inopinata
           F0304]
 gi|294458773|gb|EFG27126.1| crossover junction endodeoxyribonuclease RuvC [Scardovia inopinata
           F0304]
          Length = 192

 Score = 78.2 bits (191), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 50/151 (33%), Positives = 80/151 (52%), Gaps = 2/151 (1%)

Query: 7   IIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           I G+DPGL R G G ++  A   L F+    + S        RL  ++ GL+  +  + P
Sbjct: 3   ICGVDPGLTRCGIGFIEAGASHRLSFIHVDLVRSSPHDPQDARLLAIFNGLSRQLDTYLP 62

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
           +  ++E+VF  ++    L   QA  +A+++ A   IPV+ + P   K AV G G  +K Q
Sbjct: 63  DVVSIERVFAQENRNTVLGTAQAAGLAMVAAAQRGIPVALHTPTEAKLAVTGNGKANKAQ 122

Query: 126 IHMML-KMLMPESFFKGKDAADALAIAVCHA 155
           +  M+ K+L   +     DAAD+LA+A+CHA
Sbjct: 123 VQTMVAKILSLNALPSPPDAADSLALAICHA 153


>gi|52217413|dbj|BAD50006.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides fragilis
           YCH46]
          Length = 169

 Score = 77.8 bits (190), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 48/141 (34%), Positives = 80/141 (56%), Gaps = 5/141 (3%)

Query: 18  GWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNK 77
           G+G++ V G     ++ G I      +   +L  ++E +  +I+++ P+E A+E  F  K
Sbjct: 2   GYGVLRVCGTRPEMIAMGIIDLRKFGNHYLKLRHIHERVLSIIESYLPDELAIEAPFFGK 61

Query: 78  DAVATLKLGQARAIAILSPALAR-IPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLM-- 134
           +  + LKLG+A+ +A ++ AL+R IP++EYAP  IK A+ G G   K+Q+  ML+ ++  
Sbjct: 62  NVQSMLKLGRAQGVA-MAAALSRDIPITEYAPLKIKMAITGNGQASKEQVADMLQRMLHF 120

Query: 135 -PESFFKGKDAADALAIAVCH 154
             E      DA D LA A CH
Sbjct: 121 AKEDMPVFMDATDGLAAAYCH 141


>gi|33240597|ref|NP_875539.1| Holliday junction resolvasome endonuclease subunit [Prochlorococcus
           marinus subsp. marinus str. CCMP1375]
 gi|44888419|sp|Q7VBE8|RUVC_PROMA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|33238125|gb|AAQ00192.1| Holliday junction resolvasome endonuclease subunit [Prochlorococcus
           marinus subsp. marinus str. CCMP1375]
          Length = 155

 Score = 77.8 bits (190), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 70/121 (57%), Gaps = 2/121 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGD-NLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           I+GIDPGL R G+G+++V     +  +  G I +   Q    R+ ++ + L  +I+ W+P
Sbjct: 3   ILGIDPGLARVGYGLIEVNNQRQVKMLDCGIIKTNKNQYEGERMVEIAKDLRVLIRKWKP 62

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
             AAVE+ F  K +  T+ + QAR + I++ A  ++P+ E+ P  IK AV G GH  K +
Sbjct: 63  GLAAVEKFFFYKSS-TTISVVQARGVLIMTLARFKVPIVEFPPMQIKLAVAGSGHAKKDE 121

Query: 126 I 126
           +
Sbjct: 122 V 122


>gi|269216144|ref|ZP_06159998.1| crossover junction endodeoxyribonuclease RuvC [Slackia exigua ATCC
           700122]
 gi|269130403|gb|EEZ61481.1| crossover junction endodeoxyribonuclease RuvC [Slackia exigua ATCC
           700122]
          Length = 183

 Score = 77.8 bits (190), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 46/132 (34%), Positives = 73/132 (55%), Gaps = 2/132 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPGL  TGWGIV   G  L  ++ G I +     L+ RL ++Y+ +  +++ + P 
Sbjct: 21  ILGIDPGLANTGWGIVRQTGGRLACLAYGCISTSPNTDLSQRLRKIYDQMALIVQRYEPN 80

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
              +E V+   +  +    GQAR  A+ + A     V E++P+ IKKAV G G  +K Q+
Sbjct: 81  CLGIETVWFGANVQSAFATGQARGAALAAVARFDAKVGEFSPSQIKKAVTGEGSAEKDQV 140

Query: 127 HMMLKML--MPE 136
             M++ L  +PE
Sbjct: 141 EYMVQQLLSLPE 152


>gi|46199033|ref|YP_004700.1| crossover junction endodeoxyribonuclease ruvC [Thermus thermophilus
           HB27]
 gi|55981059|ref|YP_144356.1| Holliday junction resolvase RuvC [Thermus thermophilus HB8]
 gi|81567696|sp|Q72JP3|RUVC_THET2 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|81600435|sp|Q5SJC4|RUVC_THET8 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|46196657|gb|AAS81073.1| crossover junction endodeoxyribonuclease ruvC [Thermus thermophilus
           HB27]
 gi|55772472|dbj|BAD70913.1| Holliday junction resolvase RuvC [Thermus thermophilus HB8]
          Length = 166

 Score = 77.8 bits (190), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 86/162 (53%), Gaps = 4/162 (2%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNL--CFVSSGTIVSCVRQSLA-FRLCQLYEGLTDVIKNW 63
           + GIDPG+   G G+V V G       +  G +V    Q  A  R+ +++  + +V+  +
Sbjct: 3   VAGIDPGITHLGLGVVAVEGKGALKARLLHGEVVKTSPQEPAKERVGRIHARVLEVLHRF 62

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RPE  AVE+ F  +      K+G A    +++   A +PV  Y P  +K+A+ G GH  K
Sbjct: 63  RPEAVAVEEQFFYRQNELAYKVGWALGAVLVAAFEAGVPVYAYGPMQVKQALAGHGHAAK 122

Query: 124 KQIHMMLK-MLMPESFFKGKDAADALAIAVCHAYHANSGYYK 164
           +++ +M++ +L  +   +    ADALAIA+ HA++A  G  K
Sbjct: 123 EEVALMVRGILGLKEAPRPSHLADALAIALTHAFYARMGTAK 164


>gi|50954746|ref|YP_062034.1| Holliday junction resolvase [Leifsonia xyli subsp. xyli str.
           CTCB07]
 gi|71649497|sp|Q6AFB6|RUVC_LEIXX RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|50951228|gb|AAT88929.1| holliday juction resolvase [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 208

 Score = 77.8 bits (190), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 54/157 (34%), Positives = 89/157 (56%), Gaps = 4/157 (2%)

Query: 4   SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIV-SCVRQSLAFRLCQLYEGLTDVIKN 62
           +IR++GIDPGL R G G+VDV  D    +   T++ +     L  RL  + +G+  ++  
Sbjct: 2   TIRVLGIDPGLTRCGVGVVDVRRDRRATLVEVTVIRTPAEMPLEQRLLAVGDGIAALLDR 61

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
           + P   A+E+VF   +    + + Q   +A+ + A   +PV+ + P+ +K A+ G G  D
Sbjct: 62  YSPAAVAIERVFAQHNLRTVIGVAQVSGVALHTAAQRGLPVALHTPSEVKAAITGYGSAD 121

Query: 123 KKQIHMMLKML--MPESFFKGKDAADALAIAVCHAYH 157
           KKQ+  M+  +  +PE+     DAADALAIA+CHA+ 
Sbjct: 122 KKQVQAMVARVLGLPEAPKP-ADAADALAIAICHAWR 157


>gi|327540431|gb|EGF27016.1| crossover junction endodeoxyribonuclease ruvC [Rhodopirellula
           baltica WH47]
          Length = 149

 Score = 77.8 bits (190), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 49/142 (34%), Positives = 77/142 (54%), Gaps = 2/142 (1%)

Query: 21  IVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAV 80
           ++   G  LC   +G I S    +L  RL +++ GL++V      +  A+EQ+F + D  
Sbjct: 1   MISREGPRLCLREAGVIKSRRSDTLPERLREIHVGLSEVFAAHAVDLMALEQLFSHYDRP 60

Query: 81  AT-LKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKM-LMPESF 138
            T + +G AR +  L+ A A +PV  Y P  +KK + G G   K QI + +KM L  +S 
Sbjct: 61  RTAILMGHARGVICLAAASAGVPVEHYEPTRVKKVMTGNGRAPKSQIQLAVKMQLNLQSV 120

Query: 139 FKGKDAADALAIAVCHAYHANS 160
            +  D ADA+AI++C  Y AN+
Sbjct: 121 PEPADVADAMAISLCGHYLANN 142


>gi|332670540|ref|YP_004453548.1| crossover junction endodeoxyribonuclease RuvC [Cellulomonas fimi
           ATCC 484]
 gi|332339578|gb|AEE46161.1| crossover junction endodeoxyribonuclease RuvC [Cellulomonas fimi
           ATCC 484]
          Length = 188

 Score = 77.4 bits (189), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 53/155 (34%), Positives = 86/155 (55%), Gaps = 2/155 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVD-VAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G G+VD + G     V+ G   S V   +  RL  +   L + ++  
Sbjct: 1   MRVLGVDPGLTRCGLGVVDGLPGRRARLVAVGVARSPVDDEVDQRLLTIEAQLEEWLEEH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P+  AVE+VF   +    +   Q   +A+++ A  RIPV+ + P+ +K AV G G  +K
Sbjct: 61  APDAVAVERVFAQHNVRTVMGTAQVAGLAMVAAARRRIPVALHTPSEVKAAVTGNGRAEK 120

Query: 124 KQIHMMLKMLMP-ESFFKGKDAADALAIAVCHAYH 157
            Q+  M++ L+  E   +  DAADALA+A+CH + 
Sbjct: 121 AQVQTMVQRLLGLEELPRPADAADALALAICHLWR 155


>gi|313683668|ref|YP_004061406.1| crossover junction endodeoxyribonuclease ruvc [Sulfuricurvum
           kujiense DSM 16994]
 gi|313156528|gb|ADR35206.1| crossover junction endodeoxyribonuclease RuvC [Sulfuricurvum
           kujiense DSM 16994]
          Length = 165

 Score = 77.4 bits (189), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 77/152 (50%), Gaps = 2/152 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + I+GIDPG R  G+ IV + G  +  + +G ++    +SL +++ Q+ E +  + +   
Sbjct: 1   MNILGIDPGTRNCGYAIVTIDGQKIRLIEAG-LIKIKAESLQYQIPQVAEAIEQLFRIHT 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
            +E A+E +F   +    LKL Q R    L         +EY P  +KKA+ G     K+
Sbjct: 60  IDEVAMEDIFYAHNPKTVLKLAQFRGAITLKLLQEHGMFAEYTPLQVKKALTGKAKAAKE 119

Query: 125 QIHMMLKMLMP-ESFFKGKDAADALAIAVCHA 155
           Q+  M+K ++      K  D  DA+A+A+ HA
Sbjct: 120 QVAFMVKQILGITKEIKPMDITDAMAVAITHA 151


>gi|152991596|ref|YP_001357318.1| Holliday junction resolvase [Nitratiruptor sp. SB155-2]
 gi|166233274|sp|A6Q652|RUVC_NITSB RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|151423457|dbj|BAF70961.1| crossover junction endodeoxyribonuclease RuvC [Nitratiruptor sp.
           SB155-2]
          Length = 158

 Score = 77.4 bits (189), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 76/152 (50%), Gaps = 2/152 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + I+GIDPG R  G+ IV++   ++  + +G +V        ++L Q+ EGL  V  +  
Sbjct: 1   MNILGIDPGSRNLGYAIVELNNSHMKLIEAG-LVKIKPSEFQYQLSQMIEGLDMVFSSHS 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
            +E A+E +F   +    LKL Q R    L         S Y P  +KKA+ G     K+
Sbjct: 60  VDEVAMEDIFYAYNPQTVLKLAQFRGALALRIIQLHGNFSAYTPLQVKKALTGKAKASKE 119

Query: 125 QIHMMLKMLMP-ESFFKGKDAADALAIAVCHA 155
           Q+  M+K ++  +   K  D  DA+A+A+ HA
Sbjct: 120 QVAFMVKKILGIKKEVKPLDITDAMAVAITHA 151


>gi|297566087|ref|YP_003685059.1| crossover junction endodeoxyribonuclease RuvC [Meiothermus silvanus
           DSM 9946]
 gi|296850536|gb|ADH63551.1| crossover junction endodeoxyribonuclease RuvC [Meiothermus silvanus
           DSM 9946]
          Length = 163

 Score = 77.4 bits (189), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 82/156 (52%), Gaps = 1/156 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           ++GIDPG+   G G+V+ +G     + +  + +        R+ ++++ L  VI  +RP+
Sbjct: 3   VLGIDPGITNMGLGVVEQSGKAHRLLHARLVKTAHSDPAPQRVGEIFQNLRIVIAEFRPQ 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             AVE+ F  +    + K+G A     ++     + V  Y P  +K+A++G GH +K+Q+
Sbjct: 63  AIAVEEQFFYRQNELSYKVGWAMGAVFIAANEWGLEVYGYGPMKVKQALVGYGHAEKEQV 122

Query: 127 HMMLKMLMP-ESFFKGKDAADALAIAVCHAYHANSG 161
             M++ ++  +   K    ADALAIA+ H ++   G
Sbjct: 123 AFMVRAILGLKENPKPTHVADALAIALTHLFYLGRG 158


>gi|297626361|ref|YP_003688124.1| Crossover junction endodeoxyribonuclease (Holliday junction
           nuclease ) (Holliday junction resolvase)
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296922126|emb|CBL56694.1| Crossover junction endodeoxyribonuclease (Holliday junction
           nuclease ) (Holliday junction resolvase)
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 203

 Score = 77.0 bits (188), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 43/128 (33%), Positives = 70/128 (54%), Gaps = 1/128 (0%)

Query: 8   IGIDPGLRRTGWGIVD-VAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           +G+DPGL R G GIVD   G    FV+ G I +      A+RL  + EGL +   +++P+
Sbjct: 1   MGVDPGLTRCGVGIVDGTPGARPQFVAVGVIRTDPHTEHAYRLLAIEEGLGEWFDHYQPQ 60

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             ++E+VF   +      +GQ   IA++  A   I V+ + P+ +K AV G G  DK Q+
Sbjct: 61  AISIERVFAQHNLSTVTGIGQVAGIAMMLGARHGIDVALHTPSEVKSAVTGSGRADKAQV 120

Query: 127 HMMLKMLM 134
            +M+  ++
Sbjct: 121 GVMVAQVL 128


>gi|315453063|ref|YP_004073333.1| crossover junction endodeoxyribonuclease [Helicobacter felis ATCC
           49179]
 gi|315132115|emb|CBY82743.1| crossover junction endodeoxyribonuclease (ruvC) [Helicobacter felis
           ATCC 49179]
          Length = 165

 Score = 77.0 bits (188), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 78/150 (52%), Gaps = 5/150 (3%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R+ G+GIVDV       + +G  +      L  ++ ++ EG   ++  +   
Sbjct: 2   ILGIDPGSRKCGYGIVDVHSK---LIGAG-FIHIQNAPLQTQILEMVEGFNQILNAYPIT 57

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E +F   +  + LKL Q R    L    +    SEY P  +K+A+ G G   K+Q+
Sbjct: 58  EVAMEDIFYAHNPKSVLKLAQFRGALSLKILQSVGKFSEYTPLQVKRAISGHGKASKEQV 117

Query: 127 HMML-KMLMPESFFKGKDAADALAIAVCHA 155
             M+ K+L  ++  K  D  DALA+A+ HA
Sbjct: 118 AFMVGKILGLKNAIKPLDITDALAVALTHA 147


>gi|150005548|ref|YP_001300292.1| Holliday junction resolvase [Bacteroides vulgatus ATCC 8482]
 gi|149933972|gb|ABR40670.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides vulgatus
           ATCC 8482]
          Length = 155

 Score = 77.0 bits (188), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 45/112 (40%), Positives = 70/112 (62%), Gaps = 5/112 (4%)

Query: 47  FRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALAR-IPVSE 105
            +L +++E +  +I+ + P+E A+E  F  K+  + LKLG+A+ +A ++ AL+R IP++E
Sbjct: 16  LKLRRIFERVVGIIEAYLPDELAIEAPFFGKNVQSMLKLGRAQGVA-MAAALSRDIPITE 74

Query: 106 YAPNTIKKAVIGVGHGDKKQIHMMLKMLM--PES-FFKGKDAADALAIAVCH 154
           YAP  IK A+ G G   K+Q+  MLK ++  PES      DA D LA A CH
Sbjct: 75  YAPLKIKMAITGNGQASKEQVADMLKRMLHIPESDMLPFMDATDGLAAAYCH 126


>gi|224418816|ref|ZP_03656822.1| Holliday junction resolvase [Helicobacter canadensis MIT 98-5491]
 gi|253828195|ref|ZP_04871080.1| Holliday junction resolvase [Helicobacter canadensis MIT 98-5491]
 gi|313142335|ref|ZP_07804528.1| crossover junction endodeoxyribonuclease ruvC [Helicobacter
           canadensis MIT 98-5491]
 gi|253511601|gb|EES90260.1| Holliday junction resolvase [Helicobacter canadensis MIT 98-5491]
 gi|313131366|gb|EFR48983.1| crossover junction endodeoxyribonuclease ruvC [Helicobacter
           canadensis MIT 98-5491]
          Length = 160

 Score = 77.0 bits (188), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 78/152 (51%), Gaps = 2/152 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + I+GIDPG R  G+ I+ +  ++L  + +G ++    + L  ++ +  EG+  V+KN  
Sbjct: 1   MNILGIDPGSRNCGYAIIQMKKESLTLLEAG-LIKIKERILQHQILEFVEGIDLVLKNHL 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
               A+E +F   +    +KL Q R    L         +EY P  +KKA+ G G   K+
Sbjct: 60  INSVAIEDIFYAYNPKTVIKLAQFRGALSLKILQELGNFTEYTPLQVKKALTGNGKAQKE 119

Query: 125 QIHMMLKMLMP-ESFFKGKDAADALAIAVCHA 155
           Q+  M+K ++  +   K  D  DA+AIA+ HA
Sbjct: 120 QVAFMVKRILGIKGEIKPLDITDAIAIAITHA 151


>gi|297243468|ref|ZP_06927400.1| Holliday junction resolvasome, endonuclease subunit [Gardnerella
           vaginalis AMD]
 gi|296888513|gb|EFH27253.1| Holliday junction resolvasome, endonuclease subunit [Gardnerella
           vaginalis AMD]
          Length = 193

 Score = 77.0 bits (188), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 68/129 (52%), Gaps = 1/129 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           I+G+DPGL R G G+++      L F+    + S    S   RL ++Y GL + I+ + P
Sbjct: 3   ILGVDPGLTRCGVGVIEAGVSRRLSFIHVDVLRSEPDLSQDLRLLKIYNGLVEKIERFSP 62

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
           +  ++E+VF  ++    L   Q   IA+L+ A   IPV+ + P  +K AV G G   K Q
Sbjct: 63  DTVSIERVFAQENRNTVLGTAQVAGIAMLAAAQRNIPVALHTPTEVKLAVAGNGKAQKPQ 122

Query: 126 IHMMLKMLM 134
           +  M+  L+
Sbjct: 123 VERMVARLL 131


>gi|116073109|ref|ZP_01470371.1| Holliday junction resolvase RuvC [Synechococcus sp. RS9916]
 gi|116068414|gb|EAU74166.1| Holliday junction resolvase RuvC [Synechococcus sp. RS9916]
          Length = 160

 Score = 77.0 bits (188), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 43/128 (33%), Positives = 75/128 (58%), Gaps = 7/128 (5%)

Query: 5   IRIIGIDPGLRRTGWGIVDV---AG---DNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTD 58
           +RI+GIDPGL R G+G++DV   AG   +    +  G I +   +S   R+ ++   L  
Sbjct: 1   MRILGIDPGLARVGYGVIDVDPSAGRGTEGQTMLDCGIIRTDPGRSEGQRMVEIAGDLRQ 60

Query: 59  VIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGV 118
           +I+ W+P+ A+VE+ F  + +  T+ + QAR + I++     +P+ E+ P  IK+A+ G 
Sbjct: 61  LIRLWKPDMASVEKFFFYRSS-NTIAVVQARGVVIMTLTRFGLPIVEFPPMQIKQALTGN 119

Query: 119 GHGDKKQI 126
           GH DK ++
Sbjct: 120 GHADKDEV 127


>gi|256391547|ref|YP_003113111.1| crossover junction endodeoxyribonuclease RuvC [Catenulispora
           acidiphila DSM 44928]
 gi|256357773|gb|ACU71270.1| crossover junction endodeoxyribonuclease RuvC [Catenulispora
           acidiphila DSM 44928]
          Length = 170

 Score = 77.0 bits (188), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 57/160 (35%), Positives = 86/160 (53%), Gaps = 4/160 (2%)

Query: 5   IRIIGIDPGLRRTGWGIVD-VAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G G+V+   G  L  V  G I +     L+ RL  +  GL   +   
Sbjct: 1   MRVLGVDPGLTRCGVGVVEGTPGRPLTLVGVGVIRTPADMDLSRRLLAIETGLEQWLAEH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +PE  AVE+VF   +    +   QA A+A+L  A   +PV+ + P+ +K A+ G G   K
Sbjct: 61  QPEAVAVERVFSQHNVSTVMGTAQASAVAMLVAARHGLPVALHTPSEVKAAISGSGRAGK 120

Query: 124 KQIHMML-KMLMPESFFKGKDAADALAIAVCHAYH--ANS 160
            Q+  M+ ++L      K  DAADA A+A+CH +   ANS
Sbjct: 121 DQVATMVARVLRLAEPPKPADAADAAALAICHIWRGTANS 160


>gi|224373800|ref|YP_002608172.1| Holliday junction resolvase [Nautilia profundicola AmH]
 gi|254767480|sp|B9L734|RUVC_NAUPA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|223589637|gb|ACM93373.1| crossover junction endodeoxyribonuclease RuvC [Nautilia
           profundicola AmH]
          Length = 154

 Score = 77.0 bits (188), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 48/152 (31%), Positives = 80/152 (52%), Gaps = 4/152 (2%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++I+GIDPG  + G+ I++     L  + +G  +    + L ++L QL EG+ D+I +  
Sbjct: 1   MKILGIDPGTIKCGYAIIETK-PKLTLIDAG-FIKITEKELQYQLSQLIEGI-DMIYDSS 57

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
            +E A+E +F   +    LKL Q R    L         SEY P  +K+AV G G   K+
Sbjct: 58  IDEVAIEDIFFAYNPKTVLKLAQFRGALSLRILQIHGNFSEYTPLQVKRAVTGNGKAKKE 117

Query: 125 QIHMMLKMLMP-ESFFKGKDAADALAIAVCHA 155
           Q+  M+K ++  +   K  D  DA+A+A+ H+
Sbjct: 118 QVAFMVKRILGIKGDIKPLDITDAIAVAITHS 149


>gi|15805467|ref|NP_294163.1| Holliday junction resolvase [Deinococcus radiodurans R1]
 gi|20978757|sp|Q9RX75|RUVC_DEIRA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|6458122|gb|AAF10018.1|AE001903_6 Holliday junction resolvase [Deinococcus radiodurans R1]
          Length = 179

 Score = 77.0 bits (188), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 73/135 (54%), Gaps = 16/135 (11%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGD--------NLCFVSSGTIVSCVRQSLAFRLCQLYEGL 56
           +R++GIDPGL   G G+V+  GD        ++C  +    +      +  RL  L+E L
Sbjct: 1   MRVLGIDPGLANLGLGLVE--GDVRRAKHLYHVCLTTESAWL------MPRRLQYLHEEL 52

Query: 57  TDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVI 116
           T ++  +RP+  A+E   + + A    K+GQA  +  L+ A A +P+  Y P  +KK+++
Sbjct: 53  TRLLTEYRPDAVAIEDQILRRQADVAFKVGQAFGVVQLACAQAGVPIHAYGPMQVKKSLV 112

Query: 117 GVGHGDKKQIHMMLK 131
           G G  DK+Q+  M+K
Sbjct: 113 GTGRADKEQVIYMVK 127


>gi|283783301|ref|YP_003374055.1| crossover junction endodeoxyribonuclease RuvC [Gardnerella
           vaginalis 409-05]
 gi|283442088|gb|ADB14554.1| crossover junction endodeoxyribonuclease RuvC [Gardnerella
           vaginalis 409-05]
          Length = 193

 Score = 76.6 bits (187), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 68/129 (52%), Gaps = 1/129 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           I+G+DPGL R G G+++      L F+    + S    S   RL ++Y GL + I+ + P
Sbjct: 3   ILGVDPGLTRCGVGVIEAGVSRRLSFIHVDVLRSEPDLSQDLRLLKIYNGLVEKIERFSP 62

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
           +  ++E+VF  ++    L   Q   IA+L+ A   IPV+ + P  +K AV G G   K Q
Sbjct: 63  DTVSIERVFAQENRNTVLGTAQVAGIAMLAAAQRNIPVALHTPTEVKLAVAGNGKAQKPQ 122

Query: 126 IHMMLKMLM 134
           +  M+  L+
Sbjct: 123 VERMVARLL 131


>gi|134098595|ref|YP_001104256.1| Holliday junction resolvase [Saccharopolyspora erythraea NRRL 2338]
 gi|291008208|ref|ZP_06566181.1| crossover junction endodeoxyribonuclease RuvC [Saccharopolyspora
           erythraea NRRL 2338]
 gi|166233295|sp|A4FBA6|RUVC_SACEN RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|133911218|emb|CAM01331.1| crossover junction endodeoxyribonuclease RuvC [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 199

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/156 (35%), Positives = 85/156 (54%), Gaps = 2/156 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G G+VD   G  +  V  G   +   Q L+ RL  + E + + +   
Sbjct: 1   MRVLGVDPGLTRCGIGVVDGGRGRTVTCVGVGVARTPADQELSARLLGVAEAVDEWLDTH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RPE  A+E+VF   +    +   Q   I  L+ A   +PV+ + P+ +K A+ G G  DK
Sbjct: 61  RPEVVAIERVFSQHNVRTVMGTAQVSGIVALAAARRGLPVAFHTPSEVKAAISGSGRADK 120

Query: 124 KQIHMML-KMLMPESFFKGKDAADALAIAVCHAYHA 158
           +Q+  M+ K+L      K  DAADALA+AVCH + A
Sbjct: 121 RQVTTMVTKILGLAEAPKPADAADALALAVCHLWRA 156


>gi|25028331|ref|NP_738385.1| Holliday junction resolvase [Corynebacterium efficiens YS-314]
 gi|23493616|dbj|BAC18585.1| crossover junction endodeoxyribonuclease RuvC [Corynebacterium
           efficiens YS-314]
          Length = 230

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/158 (35%), Positives = 89/158 (56%), Gaps = 2/158 (1%)

Query: 3   KSIRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           + +R++GIDPGL R G  +V    G  +  VS G + +     LA RL +L + + + + 
Sbjct: 11  EGLRVMGIDPGLTRCGLSVVQAGRGRTVYPVSVGVVRTPSDAELADRLLRLSQAVGEWMD 70

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
           ++ P+  A+E+VF   +    +    A  + IL+ A   +PV  Y P+ +KKA+ G G  
Sbjct: 71  DYTPDVIAIERVFERGNVSTVMNTAHAVGVLILAAAERGLPVHMYTPSEVKKAISGNGRA 130

Query: 122 DKKQIHMML-KMLMPESFFKGKDAADALAIAVCHAYHA 158
           DKKQ+ +M+ ++L      K  DAADALA+AVCH + A
Sbjct: 131 DKKQMTVMITRILGLAEAPKPADAADALALAVCHCWRA 168


>gi|320332684|ref|YP_004169395.1| Crossover junction endodeoxyribonuclease ruvC [Deinococcus
           maricopensis DSM 21211]
 gi|319753973|gb|ADV65730.1| Crossover junction endodeoxyribonuclease ruvC [Deinococcus
           maricopensis DSM 21211]
          Length = 164

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/153 (33%), Positives = 82/153 (53%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           ++GIDPGL   G G+VD        + S  + +     L  RL  L+E ++ +I+ + PE
Sbjct: 3   VLGIDPGLANLGIGVVDGDARKARHLHSVCLFTASAWELPRRLRYLHEEVSRLIEVFEPE 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+E+ ++ K A    K+GQA  +  L+ A A IP+  Y P  +K+ ++G G  DK+Q+
Sbjct: 63  AVAIEEQYLRKQADVAFKVGQAFGVVQLACAQADIPIYTYGPMQVKQTIVGTGRADKEQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHAN 159
             M+K  +         AADALA+A+ H  H+ 
Sbjct: 123 IYMVKATLGIRDIMNDHAADALALAMTHLAHSG 155


>gi|259507386|ref|ZP_05750286.1| Holliday junction nuclease [Corynebacterium efficiens YS-314]
 gi|44888501|sp|Q8FPK3|RUVC_COREF RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|259165011|gb|EEW49565.1| Holliday junction nuclease [Corynebacterium efficiens YS-314]
          Length = 223

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/158 (35%), Positives = 89/158 (56%), Gaps = 2/158 (1%)

Query: 3   KSIRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           + +R++GIDPGL R G  +V    G  +  VS G + +     LA RL +L + + + + 
Sbjct: 4   EGLRVMGIDPGLTRCGLSVVQAGRGRTVYPVSVGVVRTPSDAELADRLLRLSQAVGEWMD 63

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
           ++ P+  A+E+VF   +    +    A  + IL+ A   +PV  Y P+ +KKA+ G G  
Sbjct: 64  DYTPDVIAIERVFERGNVSTVMNTAHAVGVLILAAAERGLPVHMYTPSEVKKAISGNGRA 123

Query: 122 DKKQIHMML-KMLMPESFFKGKDAADALAIAVCHAYHA 158
           DKKQ+ +M+ ++L      K  DAADALA+AVCH + A
Sbjct: 124 DKKQMTVMITRILGLAEAPKPADAADALALAVCHCWRA 161


>gi|145295782|ref|YP_001138603.1| Holliday junction resolvase [Corynebacterium glutamicum R]
 gi|140845702|dbj|BAF54701.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 242

 Score = 76.3 bits (186), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 88/158 (55%), Gaps = 2/158 (1%)

Query: 3   KSIRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           + +R++GIDPGL R G  +V    G  +  VS G + +     LA RL +L + + + + 
Sbjct: 25  EGLRVMGIDPGLTRCGLSVVQAGRGRTVYPVSVGVVRTPPDAELAERLLRLSKAVGEWMD 84

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
            + P+  A+E+VF   +    +    A  + IL+ A   +PV  Y P+ +KKA+ G G  
Sbjct: 85  EYTPDVVAIERVFERGNVSTVMNTAHAVGVLILAAAERGLPVHMYTPSEVKKAISGNGRA 144

Query: 122 DKKQIHMML-KMLMPESFFKGKDAADALAIAVCHAYHA 158
           DKKQ+ +M+ ++L      K  DAADAL++AVCH + A
Sbjct: 145 DKKQMTVMITRILGLGEPPKPADAADALSLAVCHCWRA 182


>gi|78187496|ref|YP_375539.1| crossover junction endodeoxyribonuclease RuvC [Chlorobium luteolum
           DSM 273]
 gi|123743620|sp|Q3B2D5|RUVC_PELLD RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|78167398|gb|ABB24496.1| Crossover junction endodeoxyribonuclease RuvC [Chlorobium luteolum
           DSM 273]
          Length = 191

 Score = 76.3 bits (186), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 75/148 (50%), Gaps = 1/148 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           ++GIDPG   TG+G+V         +  G +     +S   R+ +++E L  +I   +P 
Sbjct: 3   VLGIDPGSLSTGYGVVSTDDGRYRLLECGVLRLNPGKSHPARIGEIFEALDCLISRVQPG 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             ++E  FV ++  + LKLGQ R   I       + + EYAP  +K AV G G   K+Q+
Sbjct: 63  RLSIETAFVGRNVQSALKLGQVRGAVIALGVHRGLMLHEYAPREVKLAVTGRGGASKEQV 122

Query: 127 -HMMLKMLMPESFFKGKDAADALAIAVC 153
             M+  ML   S  K  D  DA+A+A+C
Sbjct: 123 AGMVTAMLGLGSVPKPLDVTDAIALALC 150


>gi|317124984|ref|YP_004099096.1| Holliday junction endonuclease RuvC [Intrasporangium calvum DSM
           43043]
 gi|315589072|gb|ADU48369.1| Holliday junction endonuclease RuvC [Intrasporangium calvum DSM
           43043]
          Length = 192

 Score = 76.3 bits (186), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 67/131 (51%), Gaps = 1/131 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVD-VAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++ +DPGL R G G++D + G  L  V  G I +    +   RL  L E L +  +  
Sbjct: 1   MRVLAVDPGLTRCGVGVIDGLPGRRLSLVEVGVIRTPSTDATPKRLVALEEELREWFERT 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RPE  A+E+VF + +    L   Q   I ++      +PV+ + P  +K AV G G  DK
Sbjct: 61  RPEAVAIERVFADTNLSTVLGTAQCTGIVMMLAERRGLPVTLHTPTEVKAAVSGSGRADK 120

Query: 124 KQIHMMLKMLM 134
           +Q+  M+  L+
Sbjct: 121 RQVTTMVTRLL 131


>gi|171911217|ref|ZP_02926687.1| Holliday junction resolvase [Verrucomicrobium spinosum DSM 4136]
          Length = 174

 Score = 76.3 bits (186), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 78/150 (52%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+ +DP LR TGW ++   G     ++ G I +  +   +  L  + E L++VIK + 
Sbjct: 8   VRILAVDPALRNTGWAVLQHEGRTTTALAYGVIQNPAKLLTSGCLVAIREQLSEVIKKFG 67

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P   AVE     +     + LG  R   +++ A   +P+ +YAP  +K+A +G G   K+
Sbjct: 68  PTSCAVESTIYVQSYKTAITLGSVRGAVLIAAAEHGLPIYDYAPREVKQAAVGKGAAAKE 127

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCH 154
           Q+  M++ ++        DAADALA+ + H
Sbjct: 128 QVAFMMRSMLRLRETPPSDAADALAVGLAH 157


>gi|302541122|ref|ZP_07293464.1| crossover junction endodeoxyribonuclease RuvC [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302458740|gb|EFL21833.1| crossover junction endodeoxyribonuclease RuvC [Streptomyces
           himastatinicus ATCC 53653]
          Length = 184

 Score = 76.3 bits (186), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/153 (37%), Positives = 86/153 (56%), Gaps = 2/153 (1%)

Query: 10  IDPGLRRTGWGIVD-VAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEA 68
           +DPGL R G G+VD VAG  L  V  G I +     +  RL  +  G+ + +   RPE  
Sbjct: 1   MDPGLTRCGIGVVDGVAGRPLRMVGVGVIRTPADAEIGDRLVLVERGIEEWLDAHRPEFV 60

Query: 69  AVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI-H 127
           AVE+VF   +    +   QA A+A+L  A   +PV+ + P+ +K AV G G  +K Q+  
Sbjct: 61  AVERVFSQHNVQTVMGTAQASAVAMLCAARRGLPVALHTPSEVKAAVTGSGRAEKAQVGA 120

Query: 128 MMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           M+ ++L  ++  K  DAADALA+A+CH + A +
Sbjct: 121 MVTRLLRLDAPPKPADAADALALAICHIWRAPA 153


>gi|158338360|ref|YP_001519537.1| Holliday junction resolvase [Acaryochloris marina MBIC11017]
 gi|189046057|sp|B0C9S0|RUVC_ACAM1 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|158308601|gb|ABW30218.1| crossover junction endodeoxyribonuclease RuvC [Acaryochloris marina
           MBIC11017]
          Length = 156

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 66/118 (55%), Gaps = 1/118 (0%)

Query: 6   RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           +I+G+DPGL   G+G++    DNL  +  G I +  +  +  RL  +YE L  V+   +P
Sbjct: 4   KILGLDPGLASLGFGVICTESDNLELLDFGIIQTPAKTDIGKRLQIIYEDLHQVLNTHQP 63

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +  A+E++F  +    T+ + QAR + +L  A  ++P+ EY P  IK A+ G G  DK
Sbjct: 64  DVVAIEKLFFYRMG-NTILVAQARGVVLLVLAQHQLPIIEYTPAQIKLALTGYGAADK 120


>gi|226357097|ref|YP_002786837.1| crossover junction endodeoxyribonuclease (Holliday junction
           resolvase) [Deinococcus deserti VCD115]
 gi|226319087|gb|ACO47083.1| putative crossover junction endodeoxyribonuclease ruvC (Holliday
           junction resolvase ruvC) [Deinococcus deserti VCD115]
          Length = 169

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/139 (31%), Positives = 73/139 (52%), Gaps = 16/139 (11%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGD--------NLCFVSSGTIVSCVRQSLAFRLCQL 52
           M   + ++GIDPGL   G G+VD  GD        ++C  +    V      +  RL  +
Sbjct: 1   MLSDMIVLGIDPGLANLGLGLVD--GDIRKARHLHHVCLTTESAWV------MPRRLQYI 52

Query: 53  YEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIK 112
           +E +T ++  ++PE  A+E   + + A    K+GQA  +  L+ A A +P+  Y P  +K
Sbjct: 53  HEEVTRLLAEYQPEAVAIEDQILRRQADVAFKVGQAFGVVQLACAQAGVPIHSYGPMQVK 112

Query: 113 KAVIGVGHGDKKQIHMMLK 131
           KA++G G  DK+Q+  M+K
Sbjct: 113 KALVGTGRADKEQVIYMVK 131


>gi|148272997|ref|YP_001222558.1| Holliday junction resolvase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|167012677|sp|A5CS08|RUVC_CLAM3 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|147830927|emb|CAN01871.1| crossover junction endodeoxyribonuclease [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
          Length = 202

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/134 (32%), Positives = 72/134 (53%), Gaps = 7/134 (5%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQS----LAFRLCQLYEGLTDVI 60
           +RI+GIDPGL R G G+VDV  D    +     V  VR S    L  RL  + +G+ +++
Sbjct: 1   MRILGIDPGLTRCGVGVVDVYADRSARLVD---VQVVRTSPTAELHHRLLAVGDGIEELV 57

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
           +  RP   A+E+VF   +    + + Q   +A++  A   + V+ + P+ +K AV G G 
Sbjct: 58  ERHRPSVVAIERVFAQDNLSTVMGVAQITGVALVGAARRGLDVALHTPSEVKAAVTGYGQ 117

Query: 121 GDKKQIHMMLKMLM 134
            DKKQ+  M+  ++
Sbjct: 118 ADKKQVATMVARIL 131


>gi|23308862|ref|NP_600874.2| Holliday junction resolvase [Corynebacterium glutamicum ATCC 13032]
 gi|24638206|sp|Q9AE11|RUVC_CORGL RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|13346822|gb|AAK19838.1|AF331924_3 crossover junction endodeoxyribonuclease RuvC [Corynebacterium
           glutamicum]
 gi|21324431|dbj|BAB99055.1| Holliday junction resolvasome endonuclease subunit [Corynebacterium
           glutamicum ATCC 13032]
          Length = 221

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 88/158 (55%), Gaps = 2/158 (1%)

Query: 3   KSIRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           + +R++GIDPGL R G  +V    G  +  VS G + +     LA RL +L + + + + 
Sbjct: 4   EGLRVMGIDPGLTRCGLSVVQAGRGRTVYPVSVGVVRTPPDAELAERLLRLSKAVGEWMD 63

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
            + P+  A+E+VF   +    +    A  + IL+ A   +PV  Y P+ +KKA+ G G  
Sbjct: 64  EYTPDVIAIERVFERGNVSTVMNTAHAVGVLILAAAERGLPVHMYTPSEVKKAISGNGRA 123

Query: 122 DKKQIHMML-KMLMPESFFKGKDAADALAIAVCHAYHA 158
           DKKQ+ +M+ ++L      K  DAADAL++AVCH + A
Sbjct: 124 DKKQMTVMITRILGLGEPPKPADAADALSLAVCHCWRA 161


>gi|269123749|ref|YP_003306326.1| crossover junction endodeoxyribonuclease RuvC [Streptobacillus
           moniliformis DSM 12112]
 gi|268315075|gb|ACZ01449.1| crossover junction endodeoxyribonuclease RuvC [Streptobacillus
           moniliformis DSM 12112]
          Length = 200

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 69/130 (53%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R+IGIDPG    G+ I+D     +  +  G I +     +  RL Q++  L  +I  ++
Sbjct: 1   MRVIGIDPGTAIIGYSILDFKNSKVELIDYGCIYTDKDLPMPERLEQIFFKLETLINMYK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  A+E++F  K+    + + QAR + +    ++ I +  Y P  +K  + G G  +KK
Sbjct: 61  PDHMAIEELFFFKNQKTIITVAQARGVIVAKAQISGIEIFNYTPLQVKTGITGYGRAEKK 120

Query: 125 QIHMMLKMLM 134
           Q+  M+++++
Sbjct: 121 QVQEMIRVIL 130


>gi|326329832|ref|ZP_08196152.1| crossover junction endodeoxyribonuclease RuvC [Nocardioidaceae
           bacterium Broad-1]
 gi|325952418|gb|EGD44438.1| crossover junction endodeoxyribonuclease RuvC [Nocardioidaceae
           bacterium Broad-1]
          Length = 182

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 71/131 (54%), Gaps = 1/131 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++GIDPGL R G G+VD + G  L  V  G I +     +  RL  + +G+   I+  
Sbjct: 1   MRVLGIDPGLTRCGMGVVDGSLGRPLSMVDVGVIRTSADLPVWERLVSIEKGIDAWIEEH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RP+  A+E++F   +    +   QA  +A++  A   +PV+ + P+ +K AV G G  DK
Sbjct: 61  RPDAVAIERIFARSNVSTIMGTAQASGLAMVCAARRGLPVALHTPSEVKAAVSGNGRADK 120

Query: 124 KQIHMMLKMLM 134
            Q+  M+  ++
Sbjct: 121 AQVTAMVTRIL 131


>gi|289523151|ref|ZP_06440005.1| crossover junction endodeoxyribonuclease RuvC [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289503694|gb|EFD24858.1| crossover junction endodeoxyribonuclease RuvC [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 165

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 70/127 (55%)

Query: 8   IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEE 67
           +GIDPG+ R G+G V+  G  L  ++ G I +    S+  RL  +Y+ + + I   RP+ 
Sbjct: 4   LGIDPGIGRVGFGYVNEEGSALSGLTFGCIDTDPDLSVQDRLNMIYDEVKNHINTIRPDV 63

Query: 68  AAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIH 127
            A+E++F  ++      + QAR + +L  A  R+P+ E  P+ +K AV G G   K Q+ 
Sbjct: 64  LAMERLFFGQNLTTAENVWQARGVILLLAAQERLPIVEPTPSQVKMAVCGYGKASKSQVQ 123

Query: 128 MMLKMLM 134
            M+K ++
Sbjct: 124 EMVKCIL 130


>gi|296274671|ref|YP_003657302.1| crossover junction endodeoxyribonuclease RuvC [Arcobacter
           nitrofigilis DSM 7299]
 gi|296098845|gb|ADG94795.1| crossover junction endodeoxyribonuclease RuvC [Arcobacter
           nitrofigilis DSM 7299]
          Length = 157

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/152 (32%), Positives = 81/152 (53%), Gaps = 4/152 (2%)

Query: 6   RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           +I+GIDPG    G+ +++   +NL    +G ++    + L  ++ ++ EGL  + +N   
Sbjct: 4   KILGIDPGTINCGYAVIEKERNNLRLCEAG-LIKIKSKILQEQIVEMVEGLDLIFENHEI 62

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARI-PVSEYAPNTIKKAVIGVGHGDKK 124
            E A+E +F   +  + +KL Q R  AI    L +    SEY P  +KKAV G G   K+
Sbjct: 63  NEVAIEDMFYAFNPKSVIKLAQFRG-AISLKVLQKFGNFSEYTPLQVKKAVTGNGKAAKE 121

Query: 125 QIHMMLKMLMP-ESFFKGKDAADALAIAVCHA 155
           Q+  M+K L+  +   K  D  DA+AIA+ HA
Sbjct: 122 QVAFMVKRLLGIKKEIKPLDITDAIAIALTHA 153


>gi|152994035|ref|YP_001359756.1| Holliday junction resolvase [Sulfurovum sp. NBC37-1]
 gi|166233304|sp|A6QD40|RUVC_SULNB RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|151425896|dbj|BAF73399.1| crossover junction endodeoxyribonuclease RuvC [Sulfurovum sp.
           NBC37-1]
          Length = 159

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/151 (32%), Positives = 77/151 (50%), Gaps = 2/151 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + I+GIDPG R  G+ I+   G     V +G ++    + L  ++ +L EG+  ++K  +
Sbjct: 1   MNILGIDPGSRNLGYCILHWDGKKFSLVEAG-LLKIKTKELQEQIVELVEGIDIILKAHQ 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
            +E A+E +F   +  + LKL Q R    L          EY P  +KKAV G G   K+
Sbjct: 60  IDEVAIEDIFFAYNPQSVLKLAQFRGALSLKILQEIGYFYEYTPLQVKKAVTGNGKATKE 119

Query: 125 QIHMMLKMLMP-ESFFKGKDAADALAIAVCH 154
           Q+  M+K L+  +   K  D  DA+AIA+ H
Sbjct: 120 QVAFMVKRLLGIKKEIKPLDITDAMAIAITH 150


>gi|186685412|ref|YP_001868608.1| Holliday junction resolvase [Nostoc punctiforme PCC 73102]
 gi|226698760|sp|B2J4H5|RUVC_NOSP7 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|186467864|gb|ACC83665.1| crossover junction endodeoxyribonuclease RuvC [Nostoc punctiforme
           PCC 73102]
          Length = 163

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 70/129 (54%), Gaps = 8/129 (6%)

Query: 6   RIIGIDPGLRRTGWGIVD-------VAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTD 58
           RI+G+DPGL   G+G++        V    +  +  G I +     +  RLC L++ L  
Sbjct: 4   RILGLDPGLATLGFGVITCTQIANKVPETTVNMLDFGVIKTSADVEMGLRLCTLFDDLHT 63

Query: 59  VIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGV 118
           V++ ++P+  A+E++F  + + +T+ + QAR + IL     R+P  E+ P  IK+A+ G 
Sbjct: 64  VMEEFQPDLVAIEKLFFYRMS-STILVAQARGVLILVLGQRRLPYVEFTPAQIKQALTGY 122

Query: 119 GHGDKKQIH 127
           G+ DK  + 
Sbjct: 123 GNADKLDVQ 131


>gi|297621996|ref|YP_003710133.1| Holliday junction endonuclease RuvC [Waddlia chondrophila WSU
           86-1044]
 gi|297377297|gb|ADI39127.1| Holliday junction endonuclease RuvC [Waddlia chondrophila WSU
           86-1044]
          Length = 159

 Score = 75.5 bits (184), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 40/128 (31%), Positives = 68/128 (53%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG    G+GIV+  G     +  G I   V+ +L  R   +Y+ +  +++   P 
Sbjct: 3   ILGIDPGTVVCGFGIVEFDGVRFRVIDFGCIRPPVKYALPDRYLVIYDSVYALLEEHDPH 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
              VE  +V  +  + +K+G AR   +++ A   +P+ EYAP+  K AV+G G   K Q+
Sbjct: 63  ALVVETQYVKHNPQSAMKIGMARGAVMIAGAKKGVPIYEYAPSKAKLAVVGNGRASKHQV 122

Query: 127 HMMLKMLM 134
             M++ L+
Sbjct: 123 QSMVQHLL 130


>gi|187736503|ref|YP_001878615.1| crossover junction endodeoxyribonuclease RuvC [Akkermansia
           muciniphila ATCC BAA-835]
 gi|238691872|sp|B2UP63|RUVC_AKKM8 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|187426555|gb|ACD05834.1| crossover junction endodeoxyribonuclease RuvC [Akkermansia
           muciniphila ATCC BAA-835]
          Length = 167

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 84/155 (54%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+ IDP +R TG+ +V+        +  GT+      S +  L  + + L ++I  W 
Sbjct: 1   MRILAIDPAIRNTGYAVVEGDYRRARALDYGTLSIPRSVSQSGCLLAIKQHLGNLIDKWN 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+E AVE++   +     + +G A+A  +++ A A + + EY+P ++K +V+G G   K 
Sbjct: 61  PDEMAVERIIYVQSHQTAITMGAAKAAVVIAAAEAGLRIMEYSPKSVKLSVVGRGAAQKT 120

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHAN 159
           Q+  M++ L+        DAADALAI + H + A+
Sbjct: 121 QVAFMVRALLELRETPESDAADALAIGLTHLFSAD 155


>gi|260903853|ref|ZP_05912175.1| crossover junction endodeoxyribonuclease RuvC [Brevibacterium
           linens BL2]
          Length = 198

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/155 (34%), Positives = 85/155 (54%), Gaps = 2/155 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVD-VAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +RI+G+DPGL R G G++D +       VS   + +    S+  RL  L E     +  +
Sbjct: 1   MRILGVDPGLTRCGLGVIDSLPARKAKMVSVDVLRTPSTDSVDLRLGALAEAFDSWLDTY 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RP+  A+E+VF   D    +   Q   + +   A   +PV+ + P+ +K A+ G G  DK
Sbjct: 61  RPDVVAIERVFARNDVSTIMGTAQVSGLTMGLAARRGLPVAMHTPSEVKAAITGSGRADK 120

Query: 124 KQI-HMMLKMLMPESFFKGKDAADALAIAVCHAYH 157
           KQ+ +M+ ++L  E+  K  DAADALAIA+CH++ 
Sbjct: 121 KQVTNMVTRILELEAAPKPADAADALAIAICHSWR 155


>gi|116670850|ref|YP_831783.1| Holliday junction resolvase [Arthrobacter sp. FB24]
 gi|166231578|sp|A0JXB3|RUVC_ARTS2 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|116610959|gb|ABK03683.1| Holliday junction endonuclease RuvC [Arthrobacter sp. FB24]
          Length = 192

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 54/160 (33%), Positives = 90/160 (56%), Gaps = 2/160 (1%)

Query: 4   SIRIIGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
           ++R++G+DPGL R G G+VDV  +     V+ G + +   +SL  RL  +   + D +  
Sbjct: 2   TLRVLGVDPGLTRCGIGVVDVEKNRRATMVAVGVVGTSPDESLDQRLLLIATSIDDWLDR 61

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
           + P   AVE+VF   +    + + QA  + I + A   IPV+ + P+ +K AV G G  +
Sbjct: 62  YEPHVLAVERVFSQLNVSTVMGVAQASGVVIAAAARRGIPVALHTPSEVKAAVTGSGTSN 121

Query: 123 KKQI-HMMLKMLMPESFFKGKDAADALAIAVCHAYHANSG 161
           K  +  ++ K+L  ++  +  DAADALA+A+ HA+ A SG
Sbjct: 122 KDAVTKLVTKILRLDAPPRPADAADALALAITHAWRAGSG 161


>gi|312196176|ref|YP_004016237.1| crossover junction endodeoxyribonuclease RuvC [Frankia sp. EuI1c]
 gi|311227512|gb|ADP80367.1| crossover junction endodeoxyribonuclease RuvC [Frankia sp. EuI1c]
          Length = 174

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 56/156 (35%), Positives = 85/156 (54%), Gaps = 3/156 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDV--AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
           +R++G+DPGL R G G+VD   AG     V  G   +   + +A RL  +   +   +  
Sbjct: 1   MRVMGVDPGLTRCGLGVVDGGGAGRRAALVEVGVARTPATEDVAIRLRDISVQIDLWLDR 60

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
            RP+  AVE+VF   +    +   Q  A+AI+  A   +PV+ Y P+ +K AV G G  D
Sbjct: 61  HRPDAVAVERVFSQANVRTVMGTAQVGAVAIVLAARRGLPVALYTPSEVKAAVTGSGRAD 120

Query: 123 KKQIHMML-KMLMPESFFKGKDAADALAIAVCHAYH 157
           K Q+  M+ K+L  ++  K  DAADALA+A+CH + 
Sbjct: 121 KAQVTFMISKLLDLDTPPKPADAADALALALCHVWR 156


>gi|170781147|ref|YP_001709479.1| Holliday junction resolvase [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|189046061|sp|B0REB8|RUVC_CLAMS RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|169155715|emb|CAQ00836.1| crossover junction endodeoxyribonuclease RuvC [Clavibacter
           michiganensis subsp. sepedonicus]
          Length = 204

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 44/134 (32%), Positives = 71/134 (52%), Gaps = 7/134 (5%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQS----LAFRLCQLYEGLTDVI 60
           +RI+GIDPGL R G G+VDV  D    +     V  VR S    L  RL  + +G+ +++
Sbjct: 1   MRILGIDPGLTRCGVGVVDVYADRSARLVD---VQVVRTSPTAELHHRLLAVGDGIEELV 57

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
              RP   AVE+VF   +    + + Q   +A++  A   + V+ + P+ +K AV G G 
Sbjct: 58  DRHRPSVVAVERVFAQDNLSTVMGVAQITGVALVGAARRGLDVALHTPSEVKAAVTGYGQ 117

Query: 121 GDKKQIHMMLKMLM 134
            DK+Q+  M+  ++
Sbjct: 118 ADKRQVATMVARIL 131


>gi|291277643|ref|YP_003517415.1| crossover junction endodeoxyribonuclease [Helicobacter mustelae
           12198]
 gi|290964837|emb|CBG40696.1| crossover junction endodeoxyribonuclease [Helicobacter mustelae
           12198]
          Length = 151

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 77/152 (50%), Gaps = 8/152 (5%)

Query: 8   IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEE 67
           +GIDPG R  G+ I+      L  + +G  +    + L +++ +  EG+  V+K+ + + 
Sbjct: 1   MGIDPGSRNCGYAIIKKENQRLFLLEAG-FIKIKERVLQYQIAEFIEGIDMVLKHHKIDS 59

Query: 68  AAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIH 127
            A+E +F   +  + +KL Q R    L         +EY P  +KKA+ G G  DK Q+ 
Sbjct: 60  VAIEDMFYAYNPKSVIKLAQFRGALSLKILQDFGNFAEYTPLQVKKALTGNGKADKNQVA 119

Query: 128 MMLKMLMPESFFKGK----DAADALAIAVCHA 155
            M+K ++     KG+    D  DA+AIA+ H+
Sbjct: 120 FMVKQILN---LKGEIRPLDITDAIAIAITHS 148


>gi|308271857|emb|CBX28465.1| hypothetical protein N47_G37890 [uncultured Desulfobacterium sp.]
          Length = 167

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 90/161 (55%), Gaps = 2/161 (1%)

Query: 2   RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           +K I++IGIDPGL  TG GI+  AG  +   S G+I +   Q LA RL  +Y  L  ++K
Sbjct: 5   QKMIKVIGIDPGLASTGVGIICGAGLKIQRFSFGSINTSKNQVLAERLDHIYSKLLLLLK 64

Query: 62  NWRPEEAAVEQVF-VNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
           + +P+   +E VF ++    + + LG+   + +LS   A +  SE A   +K  + G G+
Sbjct: 65  DEKPDLMVLEDVFSLDTYPKSGINLGKVTGVILLSACHAGVRTSEVAVREVKHVLTGNGN 124

Query: 121 GDKKQIHMMLKMLMP-ESFFKGKDAADALAIAVCHAYHANS 160
            +K+Q+ + ++ L+   +  K   A+DA+A+A+   +  N+
Sbjct: 125 ANKEQLELTVRHLLKLNTPIKPYHASDAIALALLGLFRHNN 165


>gi|113953230|ref|YP_730174.1| Holliday junction resolvase [Synechococcus sp. CC9311]
 gi|123327890|sp|Q0IBJ8|RUVC_SYNS3 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|113880581|gb|ABI45539.1| Crossover junction endodeoxyribonuclease ruvC (Hollidayjunction
           nuclease ruvC) (Holliday juction resolvase ruvC)
           [Synechococcus sp. CC9311]
          Length = 160

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 43/128 (33%), Positives = 74/128 (57%), Gaps = 7/128 (5%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSC--VR----QSLAFRLCQLYEGLTD 58
           +RI+GIDPGL R G+G++DV         S  ++ C  +R    +S   R+ ++   L  
Sbjct: 1   MRILGIDPGLARVGYGVIDVEPRKGKQEGSQRMIDCGIIRTDPGRSEGERMVEIARDLRQ 60

Query: 59  VIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGV 118
           +I+  +PE A+VE+ F  + +  T+ + QAR + I++ A   +P+ E+ P  IK+A+ G 
Sbjct: 61  IIRIHQPELASVEKFFFYRSS-NTIAVVQARGVLIMTLARFGLPIVEFPPMQIKQALTGH 119

Query: 119 GHGDKKQI 126
           GH DK ++
Sbjct: 120 GHADKDEV 127


>gi|159037422|ref|YP_001536675.1| Holliday junction resolvase [Salinispora arenicola CNS-205]
 gi|187611450|sp|A8LXW7|RUVC_SALAI RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|157916257|gb|ABV97684.1| crossover junction endodeoxyribonuclease RuvC [Salinispora
           arenicola CNS-205]
          Length = 175

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 46/131 (35%), Positives = 69/131 (52%), Gaps = 1/131 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLC-FVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++GIDPGL R G G+V+      C  ++   + +     L  RL  L   LT ++   
Sbjct: 1   MRVLGIDPGLTRCGVGVVEGVPGRPCTLIAYHVVRTDPDDELPLRLLHLDRSLTALVAEH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RP+  AVE+VF   +    +   QA  +A+L+ A A IPV  Y P+ +K AV G G  DK
Sbjct: 61  RPDGVAVERVFSQHNVRTVMGTAQASGVAVLAGARAGIPVQTYTPSEVKAAVTGSGQADK 120

Query: 124 KQIHMMLKMLM 134
            Q+  M+  L+
Sbjct: 121 AQMTAMVTRLL 131


>gi|218780989|ref|YP_002432307.1| crossover junction endodeoxyribonuclease [Desulfatibacillum
           alkenivorans AK-01]
 gi|218762373|gb|ACL04839.1| Crossover junction endodeoxyribonuclease [Desulfatibacillum
           alkenivorans AK-01]
          Length = 168

 Score = 74.7 bits (182), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 80/157 (50%), Gaps = 2/157 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++++GIDPGL  TG  +V+     +   S GTI +     L  RL  +Y+ + +V +  R
Sbjct: 1   MKVLGIDPGLAATGLALVNGTSTQVFGYSFGTITTPPESPLTDRLIHIYDRIREVAEAER 60

Query: 65  PEEAAVEQVF-VNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           P+   VE +F + K   + + LG+     +++    RIPV E A   +KK + G G  DK
Sbjct: 61  PDLMVVEDIFSLGKYPKSGITLGKVTGAILVAGRHGRIPVREVAVREVKKILTGNGAADK 120

Query: 124 KQIHMMLKM-LMPESFFKGKDAADALAIAVCHAYHAN 159
            Q+   ++  L  E   +   A+DA+A+A+   Y  +
Sbjct: 121 NQLERAVRQRLGREEAIRPSHASDAMALALIGLYRGD 157


>gi|126641559|ref|YP_001084543.1| holliday junction nuclease [Acinetobacter baumannii ATCC 17978]
          Length = 141

 Score = 74.7 bits (182), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 48/113 (42%), Positives = 72/113 (63%)

Query: 48  RLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYA 107
           RL +++ G+  ++K   P EAAVEQVF+ ++  + LKLGQAR  AI +     + V+EY 
Sbjct: 4   RLKRIFAGVERIVKFHGPTEAAVEQVFMAQNPDSALKLGQARGAAIAALVNLDLQVAEYT 63

Query: 108 PNTIKKAVIGVGHGDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
              IK++V+G G  DK+Q+ MM+  L+  +     DAADALA A+CHA+ + S
Sbjct: 64  ARQIKQSVVGYGAADKEQVQMMVMRLLNLTIKPQADAADALAAAICHAHASGS 116


>gi|325001689|ref|ZP_08122801.1| Holliday junction resolvase [Pseudonocardia sp. P1]
          Length = 159

 Score = 74.3 bits (181), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 55/156 (35%), Positives = 87/156 (55%), Gaps = 2/156 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G G+V+   G ++ FV  G + S    +L  RL  + + +   I   
Sbjct: 1   MRVLGVDPGLTRCGIGVVESGEGRSVSFVDVGVVRSGTDLALERRLLTVADEVERWIARH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RP+  AVE+VF   +    +   QA  +  L  A A +PV+ + P+ +K AV G G   K
Sbjct: 61  RPDVIAVERVFSQHNVRTVMGTAQASGVVALVAARAGLPVAFHTPSEVKAAVTGEGRAGK 120

Query: 124 KQIHMML-KMLMPESFFKGKDAADALAIAVCHAYHA 158
            Q+  M+ K+L  ++  K  DAADALA+A+CH + +
Sbjct: 121 AQVTTMVTKVLGLDTPPKPADAADALALAICHCWRS 156


>gi|257461142|ref|ZP_05626240.1| crossover junction endodeoxyribonuclease RuvC [Campylobacter
           gracilis RM3268]
 gi|257441516|gb|EEV16661.1| crossover junction endodeoxyribonuclease RuvC [Campylobacter
           gracilis RM3268]
          Length = 159

 Score = 74.3 bits (181), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 78/152 (51%), Gaps = 2/152 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++I+GIDPG R  G+ I+    + +  + +G +V    +++ F++ Q+ E +  +    +
Sbjct: 1   MKILGIDPGTRNLGYAILKKDVNKITLIEAG-LVKMKAENVQFQMTQMSEAIDQIFSAHK 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
            +E A+E +F   +  + LKL Q R    L         +EY P  +KK+V G     K+
Sbjct: 60  IDEVAIESMFYAYNPQSVLKLAQFRGALALKILQIFGNFAEYTPLQVKKSVTGKAKAAKE 119

Query: 125 QIHMMLKMLMP-ESFFKGKDAADALAIAVCHA 155
           Q+  M+K ++      K  D  DA+AIA+ HA
Sbjct: 120 QVAFMVKRILGINKEIKPLDITDAIAIALTHA 151


>gi|220912787|ref|YP_002488096.1| Holliday junction resolvase [Arthrobacter chlorophenolicus A6]
 gi|254767457|sp|B8H9D8|RUVC_ARTCA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|219859665|gb|ACL40007.1| crossover junction endodeoxyribonuclease RuvC [Arthrobacter
           chlorophenolicus A6]
          Length = 192

 Score = 74.3 bits (181), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 53/160 (33%), Positives = 91/160 (56%), Gaps = 2/160 (1%)

Query: 4   SIRIIGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
           ++R++G+DPGL R G G+VDV  +     V+ G + +   +SL  RL  +   + + +  
Sbjct: 2   TLRVLGVDPGLTRCGIGVVDVERNRRATMVAVGVVGTSPDESLDQRLLVIATAIDEWLDR 61

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
           + P+  AVE+VF   +    + + QA  + I + A   IPV+ + P+ +K AV G G  +
Sbjct: 62  YEPQVLAVERVFSQLNVSTVMGVAQASGVVIAAAARRGIPVALHTPSEVKAAVTGSGSSN 121

Query: 123 KKQI-HMMLKMLMPESFFKGKDAADALAIAVCHAYHANSG 161
           K  +  ++ K+L  ++  +  DAADALA+A+ HA+ A SG
Sbjct: 122 KDAVTKLVTKILRLDAPPRPADAADALALAITHAWRAGSG 161


>gi|167945544|ref|ZP_02532618.1| crossover junction endodeoxyribonuclease RuvC [Endoriftia
          persephone 'Hot96_1+Hot96_2']
          Length = 94

 Score = 74.3 bits (181), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 39/89 (43%), Positives = 57/89 (64%), Gaps = 1/89 (1%)

Query: 5  IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
          +RI+GIDPG R TG+G++D  G     V  GT+      +L  RL +++  L++VI+ +R
Sbjct: 2  LRILGIDPGSRVTGFGVIDSDGVRSSHVVHGTL-RLEGNALPPRLGEIFSRLSEVIETYR 60

Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAI 93
          P+  A+EQVFV K+  + LKLGQ R  AI
Sbjct: 61 PQVMAIEQVFVAKNPQSALKLGQVRGAAI 89


>gi|319442166|ref|ZP_07991322.1| Holliday junction resolvase [Corynebacterium variabile DSM 44702]
          Length = 185

 Score = 73.9 bits (180), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 86/158 (54%), Gaps = 2/158 (1%)

Query: 3   KSIRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           + +R++GIDPGL R G  +V    G  +  V+ G + +     L  RL +L   + + + 
Sbjct: 2   QGLRVMGIDPGLTRCGLSVVQAGHGRAVLPVAVGVVRTPHEIPLQERLLRLSVAVEEWMD 61

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
           ++ PE  A+E+VF   +    +    A  + +LS A   IPV +Y P+  KKA+ G G  
Sbjct: 62  DYSPEVVAIERVFERGNVSTVMNTAHAVGVLMLSAARRGIPVHQYTPSEAKKALTGNGRA 121

Query: 122 DKKQI-HMMLKMLMPESFFKGKDAADALAIAVCHAYHA 158
           DKKQ+  M+ ++L      +  DAADALA+AVCH + A
Sbjct: 122 DKKQMTSMVTRILGLSEPPRPADAADALALAVCHCWRA 159


>gi|209526684|ref|ZP_03275208.1| crossover junction endodeoxyribonuclease RuvC [Arthrospira maxima
           CS-328]
 gi|209492920|gb|EDZ93251.1| crossover junction endodeoxyribonuclease RuvC [Arthrospira maxima
           CS-328]
          Length = 172

 Score = 73.9 bits (180), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 68/130 (52%), Gaps = 8/130 (6%)

Query: 5   IRIIGIDPGLRRTGWGIVDV-------AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLT 57
           +RI+G+DPGL   G+GI++         G     +  G I +   Q L  RL  +Y  L 
Sbjct: 3   VRIMGLDPGLATLGFGIIECHTCEEARGGSLFSVMDFGAIQTEANQPLGDRLQTIYADLH 62

Query: 58  DVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIG 117
            +++ W+P+   VE++F  +    T+ + QAR + +L  A   +P+ E+ P  IK+A+ G
Sbjct: 63  TLLEQWQPDLVGVEKLFFYRMG-NTIAVAQARGVLLLVLAQRHLPIFEFTPAQIKQALTG 121

Query: 118 VGHGDKKQIH 127
            G+  K Q+ 
Sbjct: 122 YGNAKKYQVQ 131


>gi|331697371|ref|YP_004333610.1| Crossover junction endodeoxyribonuclease ruvC [Pseudonocardia
           dioxanivorans CB1190]
 gi|326952060|gb|AEA25757.1| Crossover junction endodeoxyribonuclease ruvC [Pseudonocardia
           dioxanivorans CB1190]
          Length = 188

 Score = 73.9 bits (180), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 69/131 (52%), Gaps = 1/131 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVD-VAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G G+VD   G  + FV+   + +     L  RL  + +     I  +
Sbjct: 1   MRVLGVDPGLTRCGIGVVDSTGGRGVEFVAVDVVRTPAHAPLPARLLAVADAADRWIAAF 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P+  AVE+VF   +  + +   QA  +  L+ A A +PV+ + P+ +K +V G G  DK
Sbjct: 61  SPDVVAVERVFSQHNVRSVMGTAQASGVIALAAARAGLPVAFHTPSEVKASVTGAGRADK 120

Query: 124 KQIHMMLKMLM 134
            Q+  M+  L+
Sbjct: 121 AQVTTMVTRLL 131


>gi|309812859|ref|ZP_07706592.1| crossover junction endodeoxyribonuclease RuvC [Dermacoccus sp.
           Ellin185]
 gi|308433181|gb|EFP57080.1| crossover junction endodeoxyribonuclease RuvC [Dermacoccus sp.
           Ellin185]
          Length = 213

 Score = 73.9 bits (180), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 55/160 (34%), Positives = 85/160 (53%), Gaps = 2/160 (1%)

Query: 2   RKSIRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           R  +R++ +DPGL R G G+V    G  L  V+ G I +     L  RL +L   L  V 
Sbjct: 32  RCDVRVLAVDPGLTRCGVGVVATGQGSTLQIVTVGVIRTSADLPLHERLHELRVELDAVF 91

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
           +  +P+  AVE++F   D    +   QA A+ +L+ A   +P+  + P+ +K AV G G 
Sbjct: 92  ERTQPDAVAVERMFARHDVSTIMGTAQASAVPMLAAAERGLPLGLHTPSEVKAAVTGNGR 151

Query: 121 GDKKQIHMML-KMLMPESFFKGKDAADALAIAVCHAYHAN 159
            DK Q+  M+ ++L  E   +  DAADALA+A+CH +   
Sbjct: 152 ADKAQVTTMVTRILGLEVAPRPADAADALALAICHHWRGG 191


>gi|312880159|ref|ZP_07739959.1| crossover junction endodeoxyribonuclease RuvC [Aminomonas
           paucivorans DSM 12260]
 gi|310783450|gb|EFQ23848.1| crossover junction endodeoxyribonuclease RuvC [Aminomonas
           paucivorans DSM 12260]
          Length = 171

 Score = 73.6 bits (179), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 65/127 (51%)

Query: 8   IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEE 67
           +G+DPGL   G+G+V   GD L     G + +   + L  RL  LYE L      W P  
Sbjct: 10  LGLDPGLGTLGYGLVRQKGDRLLAEEYGVVRTPPGEPLPDRLRMLYEELRRRTGAWHPSV 69

Query: 68  AAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIH 127
            AVE+++  K+      + QAR + +L      +P+ E  P+ +K AV G G  +K+Q+ 
Sbjct: 70  VAVERLYFGKNVTTAEMVWQARGVVLLFATQLGVPLFEPKPSEVKLAVCGNGGAEKRQVQ 129

Query: 128 MMLKMLM 134
            M++ L+
Sbjct: 130 GMVQCLL 136


>gi|284054437|ref|ZP_06384647.1| Holliday junction resolvase [Arthrospira platensis str. Paraca]
          Length = 175

 Score = 73.6 bits (179), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 40/129 (31%), Positives = 67/129 (51%), Gaps = 7/129 (5%)

Query: 5   IRIIGIDPGLRRTGWGIVDV------AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTD 58
           +RI+G+DPGL   G+GI++        G     +  G I +   Q L  RL  +Y  L  
Sbjct: 9   VRIMGLDPGLATLGFGIIECQTGEAGGGSLFSVIDFGAIQTEAHQPLGDRLQTIYADLHT 68

Query: 59  VIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGV 118
           +++ W+P+   VE++F  +    T+ + QAR + +L  A   +P+ E  P  IK+A+ G 
Sbjct: 69  LLEQWQPDLVGVEKLFFYRMG-NTIAVAQARGVLVLVLAQRHLPIFELTPAQIKQALTGY 127

Query: 119 GHGDKKQIH 127
           G+  K Q+ 
Sbjct: 128 GNAKKYQVQ 136


>gi|254430887|ref|ZP_05044590.1| crossover junction endodeoxyribonuclease RuvC [Cyanobium sp. PCC
           7001]
 gi|197625340|gb|EDY37899.1| crossover junction endodeoxyribonuclease RuvC [Cyanobium sp. PCC
           7001]
          Length = 160

 Score = 73.6 bits (179), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 71/128 (55%), Gaps = 7/128 (5%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSC------VRQSLAFRLCQLYEGLTD 58
           +RI+GIDPGL R G+G+++V            ++ C        +S   R+ ++   L  
Sbjct: 1   MRILGIDPGLARVGYGVIEVQEQPGATAQPQQLLDCGILRTDAGRSEGERMVEIAADLRV 60

Query: 59  VIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGV 118
           +++ W+P+ A VE+ F  + +  T+ + QAR + I++ A  ++PV E  P  IK+A+ G 
Sbjct: 61  LLRRWQPQLAVVEKFFFYRSS-TTIAVVQARGVVIMTLARFQVPVMELPPMQIKQALTGN 119

Query: 119 GHGDKKQI 126
           GH +K ++
Sbjct: 120 GHAEKAEV 127


>gi|116329113|ref|YP_798833.1| crossover junction endoribonuclease [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116121857|gb|ABJ79900.1| Crossover junction endoribonuclease [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
          Length = 166

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/148 (33%), Positives = 82/148 (55%), Gaps = 1/148 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RIIGIDPG  R G+ I++     +  ++ GT+           L  L +GLT+++K ++
Sbjct: 1   MRIIGIDPGSHRAGYAILEKTASKIRILAYGTVEVPSGTPSPNNLLVLRKGLTEILKEFK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P  A+VE++F  K+     ++ ++R + +++ A   I + E   + IKK   G G+ DKK
Sbjct: 61  PSIASVEEMFFAKNKKTASRVFESRGVLLVTLAEMNIQILEPTVSQIKKGTTGSGNADKK 120

Query: 125 QIHMMLKMLMPESFFKGKDAA-DALAIA 151
           QI   LK+L+     KG D + DA+A A
Sbjct: 121 QIRQALKLLLDIDLLKGHDDSWDAVAAA 148


>gi|238926805|ref|ZP_04658565.1| crossover junction endodeoxyribonuclease [Selenomonas flueggei ATCC
           43531]
 gi|238885337|gb|EEQ48975.1| crossover junction endodeoxyribonuclease [Selenomonas flueggei ATCC
           43531]
          Length = 126

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 40/111 (36%), Positives = 68/111 (61%), Gaps = 3/111 (2%)

Query: 48  RLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYA 107
           RL ++Y  L ++I+ + PE   VEQ+F N++    + +GQAR + +L+ A   + + E  
Sbjct: 6   RLLKIYTALDELIQKYHPEAMGVEQLFFNRNVTTAIPVGQARGVVLLAAAQNNLVLIERT 65

Query: 108 PNTIKKAVIGVGHGDKKQ-IHMMLKML-MPESFFKGKDAADALAIAVCHAY 156
           P  +K++V G G   K+Q I+M+ K+L +PE+     D ADALA+A+  A+
Sbjct: 66  PLQVKQSVTGYGKATKEQVIYMVTKLLHLPEAPHPD-DTADALAVAISAAH 115


>gi|318040305|ref|ZP_07972261.1| Holliday junction resolvase [Synechococcus sp. CB0101]
          Length = 158

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 70/124 (56%), Gaps = 5/124 (4%)

Query: 7   IIGIDPGLRRTGWGIVDVAGD----NLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
           I+GIDPGL R G+G+++V G         +  G I +   +S   R+ ++   L  +I+ 
Sbjct: 3   ILGIDPGLARVGYGLIEVEGTPGRGQQRLLDCGIIRTDPGRSEGERMVEIARDLRQLIRA 62

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
           W+P+ A VE+ F  + +  T+ + QAR + +++ A  +IPV E+ P  IK A+ G GH +
Sbjct: 63  WQPQLAVVEKFFFYRSS-TTISVVQARGVLMMTLARFQIPVVEFPPMQIKLALAGHGHAE 121

Query: 123 KKQI 126
           K  +
Sbjct: 122 KDDV 125


>gi|325963420|ref|YP_004241326.1| Holliday junction endonuclease RuvC [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323469507|gb|ADX73192.1| Holliday junction endonuclease RuvC [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 192

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/160 (33%), Positives = 91/160 (56%), Gaps = 2/160 (1%)

Query: 4   SIRIIGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
           ++R++G+DPGL R G G+VDV  +     V+ G + +   +SL  RL  +   + + +  
Sbjct: 2   TLRVLGVDPGLTRCGIGVVDVERNRRATMVAVGVVGTSPEESLDQRLLLIACSIDEWLDR 61

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
           + P+  AVE+VF   +    + + QA  + I + A   IPV+ + P+ +K AV G G  +
Sbjct: 62  YEPQVLAVERVFSQLNVSTVMGVAQASGVVIAAAARRGIPVALHTPSEVKAAVTGSGSSN 121

Query: 123 KKQI-HMMLKMLMPESFFKGKDAADALAIAVCHAYHANSG 161
           K  +  ++ K+L  ++  +  DAADALA+A+ HA+ A SG
Sbjct: 122 KDAVTKLVTKILRLDAPPRPADAADALALAITHAWRAGSG 161


>gi|149923022|ref|ZP_01911440.1| crossover junction endodeoxyribonuclease RuvC [Plesiocystis
           pacifica SIR-1]
 gi|149816143|gb|EDM75653.1| crossover junction endodeoxyribonuclease RuvC [Plesiocystis
           pacifica SIR-1]
          Length = 190

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/159 (33%), Positives = 84/159 (52%), Gaps = 10/159 (6%)

Query: 6   RIIGIDPGLRRTGWGIVDV-------AGD---NLCFVSSGTIVSCVRQSLAFRLCQLYEG 55
           RI+GIDPG R  G+ +V+V       AG       +V  G + +  R  +  RL ++  G
Sbjct: 5   RILGIDPGTRVVGYALVEVPTRSKSSAGPGPARFDYVECGVLRARARDEMHVRLVEIASG 64

Query: 56  LTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAV 115
           L +++  ++P E A+E+ F   +A + L L +AR    L      + V+EYAP  IK+AV
Sbjct: 65  LRELLAEFQPHELAIERAFHGLNAASALTLAEARGAFKLIALEHGLSVAEYAPAMIKRAV 124

Query: 116 IGVGHGDKKQIHMMLKMLMPESFFKGKDAADALAIAVCH 154
            G G   K ++   +++L   +     DAADALA A+CH
Sbjct: 125 TGRGRATKAEVQARVQLLCRLAKEPQADAADALATAICH 163


>gi|305681296|ref|ZP_07404103.1| crossover junction endodeoxyribonuclease RuvC [Corynebacterium
           matruchotii ATCC 14266]
 gi|305659501|gb|EFM49001.1| crossover junction endodeoxyribonuclease RuvC [Corynebacterium
           matruchotii ATCC 14266]
          Length = 235

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/158 (33%), Positives = 86/158 (54%), Gaps = 2/158 (1%)

Query: 3   KSIRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           + +R++GIDPGL R G  +V    G ++  V+ G + +     +A RL +L E   D + 
Sbjct: 19  EGMRVMGIDPGLTRCGLSVVQAGRGRSVIPVAVGVVRTPSDSDIAHRLLELSEAANDWLD 78

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
            ++P+  A+E++F   +    +       + +L+ A   I V  Y P+ +KKA+ G G  
Sbjct: 79  QYQPDVVAIERIFERGNVSTVMNTAHGVGVLMLAAAQRGIDVHLYTPSEVKKAISGNGRA 138

Query: 122 DKKQIHMML-KMLMPESFFKGKDAADALAIAVCHAYHA 158
           DKKQ+  M+ ++L      K  DAADALA+AVCH + A
Sbjct: 139 DKKQMTAMITRILGLTEAPKPADAADALALAVCHCWRA 176


>gi|332295725|ref|YP_004437648.1| Crossover junction endodeoxyribonuclease ruvC [Thermodesulfobium
           narugense DSM 14796]
 gi|332178828|gb|AEE14517.1| Crossover junction endodeoxyribonuclease ruvC [Thermodesulfobium
           narugense DSM 14796]
          Length = 158

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 78/150 (52%), Gaps = 3/150 (2%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG+   G+ I  V  DN   + S  ++     S   RLC+++E L+ +I  + P+
Sbjct: 3   ILGIDPGVADIGYAI--VKKDNKIKLESCGLIQVHGCSQNQRLCRIFEELSFIIDKYNPD 60

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             ++E++F  K+    + + + R +  L  +   I   EY P  +K+ + G G  +K Q+
Sbjct: 61  ACSIEKIFYFKNQKTVMDVSEGRGVIKLVLSRKNIQYREYTPKEVKRLISGNGLANKDQV 120

Query: 127 HMMLKMLMPESFFK-GKDAADALAIAVCHA 155
              ++ ++  +F     D  DA+A+A+ ++
Sbjct: 121 RRSVEYILGSNFNNLQDDVTDAIALALIYS 150


>gi|294827719|ref|NP_710904.2| putative Holliday junction endodeoxyribonuclease protein
           [Leptospira interrogans serovar Lai str. 56601]
 gi|293385562|gb|AAN47922.2| putative holliday junction endodeoxyribonuclease protein
           [Leptospira interrogans serovar Lai str. 56601]
          Length = 171

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/148 (31%), Positives = 80/148 (54%), Gaps = 1/148 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RIIGIDPG  R G+ +++     +  ++ GT+           L  L +GL ++++ + 
Sbjct: 8   LRIIGIDPGSHRAGYAVLEKNASKIKILNYGTVEVPSGTPSPDNLLMLRKGLREILEEFN 67

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P  A+VE++F  K+     ++ ++R + +++ A   I + E   + IKK   G G  DKK
Sbjct: 68  PSIASVEEMFFAKNKKTASRVFESRGVLLVTLAEMNIRILEPTVSQIKKGTTGSGTADKK 127

Query: 125 QIHMMLKMLMPESFFKGKDAA-DALAIA 151
           QIH  LK+L+     KG D + DA+A A
Sbjct: 128 QIHQALKLLLNVELLKGHDDSWDAIAAA 155


>gi|225021301|ref|ZP_03710493.1| hypothetical protein CORMATOL_01320 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224946034|gb|EEG27243.1| hypothetical protein CORMATOL_01320 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 223

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/158 (33%), Positives = 86/158 (54%), Gaps = 2/158 (1%)

Query: 3   KSIRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           + +R++GIDPGL R G  +V    G ++  V+ G + +     +A RL +L E   D + 
Sbjct: 7   EGMRVMGIDPGLTRCGLSVVQAGRGRSVIPVAVGVVRTPSDSDIAHRLLELSEAANDWLD 66

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
            ++P+  A+E++F   +    +       + +L+ A   I V  Y P+ +KKA+ G G  
Sbjct: 67  QYQPDVVAIERIFERGNVSTVMNTAHGVGVLMLAAAQRGIDVHLYTPSEVKKAISGNGRA 126

Query: 122 DKKQIHMML-KMLMPESFFKGKDAADALAIAVCHAYHA 158
           DKKQ+  M+ ++L      K  DAADALA+AVCH + A
Sbjct: 127 DKKQMTAMITRILGLTEAPKPADAADALALAVCHCWRA 164


>gi|295112191|emb|CBL28941.1| crossover junction endodeoxyribonuclease RuvC [Synergistetes
           bacterium SGP1]
          Length = 171

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 65/127 (51%)

Query: 8   IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEE 67
           +G+DPGL R G+G V  +G     +  G I +  + S   R+ Q+Y  L + ++   P  
Sbjct: 10  LGVDPGLARVGYGAVARSGSRFRALEYGCIETSPKLSFMQRILQIYAKLGEQLERCAPAF 69

Query: 68  AAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIH 127
            +VE++F   +A     + QAR + +L  A   + V E  PN IK AV G G  DK+Q+ 
Sbjct: 70  MSVERLFFGHNATTAEFVWQARGVVMLLAAQRGLAVVEPKPNQIKLAVCGTGGADKRQVQ 129

Query: 128 MMLKMLM 134
            M +  +
Sbjct: 130 RMTQRFL 136


>gi|225848859|ref|YP_002729023.1| crossover junction endodeoxyribonuclease RuvC (Hollidayjunction
           nuclease ruvC) (Holliday junction resolvase ruvC)
           [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643382|gb|ACN98432.1| crossover junction endodeoxyribonuclease RuvC (Hollidayjunction
           nuclease ruvC) (Holliday junction resolvase ruvC)
           [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 153

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 75/151 (49%), Gaps = 4/151 (2%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++II +DP   +TG+ + +V  D +  +  G+I+   +++    L  L+E L D I    
Sbjct: 1   MKIISLDPSTSKTGYAVAEVYEDKISLIEYGSILLKGKKN---TLKLLFETLQDKINQHS 57

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
            E   +E  F + +A   +KLG+ R + +L   +  + V +Y P  +K A  G G   K+
Sbjct: 58  IEAVILETPFYSINAQTLIKLGEVRGVILLLAQINNLKVFQYTPAEVKIAATGYGRSSKE 117

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHA 155
           ++  M+  +      +  D AD+LAI  CH 
Sbjct: 118 EVINMVNRIFNLD-IQDSDIADSLAILYCHT 147


>gi|325284122|ref|YP_004256663.1| Crossover junction endodeoxyribonuclease ruvC [Deinococcus
           proteolyticus MRP]
 gi|324315931|gb|ADY27046.1| Crossover junction endodeoxyribonuclease ruvC [Deinococcus
           proteolyticus MRP]
          Length = 178

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 67/127 (52%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++G+DPGL   G G+VD        +    + +   Q +  RL  L+  ++ VI  ++
Sbjct: 1   MRVLGVDPGLANLGLGVVDGDVRRAVCLHQECVTTPSSQEMGQRLLTLHRHVSAVIDEFQ 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  A+E   + + A    K+GQA  +  L+     +PV  Y P  +KKA++G G  +K+
Sbjct: 61  PDAVALEDQILRRQADVAFKVGQAYGVVQLTCGQRGLPVYGYGPMQVKKALVGTGRAEKE 120

Query: 125 QIHMMLK 131
           Q+  M++
Sbjct: 121 QVIYMVR 127


>gi|291565685|dbj|BAI87957.1| crossover junction endodeoxyribonuclease RuvC [Arthrospira
           platensis NIES-39]
          Length = 169

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 69/129 (53%), Gaps = 7/129 (5%)

Query: 5   IRIIGIDPGLRRTGWGIVDV----AGDNLCF--VSSGTIVSCVRQSLAFRLCQLYEGLTD 58
           +RI+G+DPGL   G+GI++     AG    F  +  G I +   Q L  RL  +Y  L  
Sbjct: 3   VRIMGLDPGLATLGFGIIECQTGEAGGRSLFSVIDFGAIQTEAHQPLGDRLQTIYADLHT 62

Query: 59  VIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGV 118
           +++ W+P+   VE++F  +    T+ + QAR + +L  A   +P+ E  P  IK+A+ G 
Sbjct: 63  LLEQWQPDLVGVEKLFFYRMG-NTIAVAQARGVLVLVLAQRHLPIFELTPAQIKQALTGY 121

Query: 119 GHGDKKQIH 127
           G+  K Q+ 
Sbjct: 122 GNAKKYQVQ 130


>gi|154508895|ref|ZP_02044537.1| hypothetical protein ACTODO_01406 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798529|gb|EDN80949.1| hypothetical protein ACTODO_01406 [Actinomyces odontolyticus ATCC
           17982]
          Length = 209

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 69/131 (52%), Gaps = 1/131 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++GIDPGL R G G+VDV A      V  G   +    +  FRL  + + +  VI+ +
Sbjct: 1   MRVMGIDPGLTRCGLGVVDVDASRRASLVYVGVARTDKDLATHFRLRTIADAIDSVIERY 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            PE AA+E+VF   +  +     Q    A+     A +P++ + P+ +K AV G G+ DK
Sbjct: 61  EPEVAAIERVFAQDNLQSVTTTMQVMGAAMTCVGRAGLPMAVHTPSEVKSAVSGNGNADK 120

Query: 124 KQIHMMLKMLM 134
            Q+  M+  ++
Sbjct: 121 AQVQAMVARIL 131


>gi|255325097|ref|ZP_05366203.1| crossover junction endodeoxyribonuclease RuvC [Corynebacterium
           tuberculostearicum SK141]
 gi|255297662|gb|EET76973.1| crossover junction endodeoxyribonuclease RuvC [Corynebacterium
           tuberculostearicum SK141]
          Length = 188

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/158 (34%), Positives = 85/158 (53%), Gaps = 2/158 (1%)

Query: 3   KSIRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           + +R++GIDPGL R G  +V    G  +  VS G + +   + L  RL +L     + + 
Sbjct: 4   EGMRVMGIDPGLTRCGLSVVQAGRGRAILPVSVGVVRTPSDKDLTERLLRLSVAAKEWMD 63

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
           ++ P+  A+E+VF        ++      + +L+ A   IPV  Y P+ +KKA+ G G  
Sbjct: 64  DYSPDVVAIERVFERGQVSTVMQTAHVVGVLVLAAAERDIPVYMYTPSEVKKAISGNGRA 123

Query: 122 DKKQIHMML-KMLMPESFFKGKDAADALAIAVCHAYHA 158
           DKKQ+  M+ ++L      K  DAADALA+AVCH + A
Sbjct: 124 DKKQMTTMITRILGLTEPPKPADAADALALAVCHCWRA 161


>gi|306836242|ref|ZP_07469224.1| crossover junction endoribonuclease subunit C [Corynebacterium
           accolens ATCC 49726]
 gi|304567834|gb|EFM43417.1| crossover junction endoribonuclease subunit C [Corynebacterium
           accolens ATCC 49726]
          Length = 190

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/158 (34%), Positives = 85/158 (53%), Gaps = 2/158 (1%)

Query: 3   KSIRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           + +R++GIDPGL R G  +V    G  +  VS G + +   + L  RL +L     + + 
Sbjct: 4   EGMRVMGIDPGLTRCGLSVVQAGRGRAILPVSVGVVRTPSDKDLTERLLRLSVAAKEWMD 63

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
           ++ P+  A+E+VF        ++      + +L+ A   IPV  Y P+ +KKA+ G G  
Sbjct: 64  DYSPDVVAIERVFERGQVSTVMQTAHVVGVLVLAAAERDIPVYMYTPSEVKKAISGNGRA 123

Query: 122 DKKQIHMML-KMLMPESFFKGKDAADALAIAVCHAYHA 158
           DKKQ+  M+ ++L      K  DAADALA+AVCH + A
Sbjct: 124 DKKQMTTMITRILGLTEPPKPADAADALALAVCHCWRA 161


>gi|304389422|ref|ZP_07371385.1| crossover junction endoribonuclease subunit C [Mobiluncus curtisii
           subsp. curtisii ATCC 35241]
 gi|304327232|gb|EFL94467.1| crossover junction endoribonuclease subunit C [Mobiluncus curtisii
           subsp. curtisii ATCC 35241]
          Length = 213

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 73/133 (54%), Gaps = 5/133 (3%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLC-FVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++GIDPG+ R G G+VD      C  V    + S    +  FRL ++ +G+ + I  +
Sbjct: 1   MRVLGIDPGITRCGIGVVDFDTSRRCTLVYVDVVRSDPNTATQFRLLKISQGVAEAINRF 60

Query: 64  RPEEAAVEQVFV--NKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
           +P+  A+E+ F   N+ +VAT    QA  IA++  A   +PV+ + P+ +K AV G G  
Sbjct: 61  QPDIVALERPFAKENRQSVATTM--QAMGIAMVEAARQGLPVAVHTPSEVKAAVSGNGSA 118

Query: 122 DKKQIHMMLKMLM 134
            K Q+  M+  ++
Sbjct: 119 SKAQVQAMVARIL 131


>gi|298346873|ref|YP_003719560.1| crossover junction endodeoxyribonuclease [Mobiluncus curtisii ATCC
           43063]
 gi|298236934|gb|ADI68066.1| crossover junction endodeoxyribonuclease [Mobiluncus curtisii ATCC
           43063]
          Length = 213

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 73/133 (54%), Gaps = 5/133 (3%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLC-FVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++GIDPG+ R G G+VD      C  V    + S    +  FRL ++ +G+ + I  +
Sbjct: 1   MRVLGIDPGITRCGIGVVDFDTSRRCTLVYVDVVRSDPNTATQFRLLKISQGVAEAINRF 60

Query: 64  RPEEAAVEQVFV--NKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
           +P+  A+E+ F   N+ +VAT    QA  IA++  A   +PV+ + P+ +K AV G G  
Sbjct: 61  QPDIVALERPFAKENRQSVATTM--QAMGIAMVEAARQGLPVAVHTPSEVKAAVSGNGSA 118

Query: 122 DKKQIHMMLKMLM 134
            K Q+  M+  ++
Sbjct: 119 SKAQVQAMVARIL 131


>gi|312139493|ref|YP_004006829.1| crossover junction endodeoxyribonuclease ruvc [Rhodococcus equi
           103S]
 gi|325672617|ref|ZP_08152313.1| crossover junction endoribonuclease subunit C [Rhodococcus equi
           ATCC 33707]
 gi|311888832|emb|CBH48144.1| crossover junction endodeoxyribonuclease RuvC [Rhodococcus equi
           103S]
 gi|325556494|gb|EGD26160.1| crossover junction endoribonuclease subunit C [Rhodococcus equi
           ATCC 33707]
          Length = 191

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/156 (35%), Positives = 88/156 (56%), Gaps = 2/156 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G+G+VD   G  +  V+   + +     LA RL ++ E   + +  +
Sbjct: 1   MRVLGVDPGLTRCGFGVVDAGRGREVRPVAVDVVRTPPEMELASRLLRISEAADEWLDRF 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RP   AVE+VF   +    +   QA  +  L+ A   IPV  + P+ +K AV G G  DK
Sbjct: 61  RPTVVAVERVFAQHNVRTAMGTAQAGGVVALAAAKRGIPVCFHTPSQVKAAVTGSGTADK 120

Query: 124 KQIH-MMLKMLMPESFFKGKDAADALAIAVCHAYHA 158
           KQ+  M+ ++L  ++  K  DAADALA+A+CH + A
Sbjct: 121 KQVTAMVTRILGLDTPPKPADAADALALAICHCWRA 156


>gi|319957848|ref|YP_004169111.1| holliday junction endonuclease ruvc [Nitratifractor salsuginis DSM
           16511]
 gi|319420252|gb|ADV47362.1| Holliday junction endonuclease RuvC [Nitratifractor salsuginis DSM
           16511]
          Length = 158

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 74/150 (49%), Gaps = 2/150 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R  G+  +      +  + +G ++     +L  ++ +L EGL  ++K   P+
Sbjct: 3   IMGIDPGSRNLGYCFLHYERGKMELLEAG-LLKIAPGTLQEQIVELAEGLDLLLKKQHPD 61

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E +F   +    LKL Q R    L          EY P  +KKA+ G G   K+Q+
Sbjct: 62  EVAIEDIFYAFNPKTVLKLAQFRGALSLKVLQEVGYFYEYTPLQVKKALTGNGKAAKEQV 121

Query: 127 HMMLKMLMP-ESFFKGKDAADALAIAVCHA 155
             M+K L+      K  D  DA+AIA+ HA
Sbjct: 122 AFMVKRLLGIRREIKPLDITDAMAIAITHA 151


>gi|315655418|ref|ZP_07908318.1| crossover junction endoribonuclease subunit C [Mobiluncus curtisii
           ATCC 51333]
 gi|315490358|gb|EFU79983.1| crossover junction endoribonuclease subunit C [Mobiluncus curtisii
           ATCC 51333]
          Length = 213

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 73/133 (54%), Gaps = 5/133 (3%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLC-FVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++GIDPG+ R G G+VD      C  V    + S    +  FRL ++ +G+ + I  +
Sbjct: 1   MRVLGIDPGITRCGIGVVDFDASRRCTLVYVDVVRSDPNTATQFRLLKISQGVAEAINRF 60

Query: 64  RPEEAAVEQVFV--NKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
           +P+  A+E+ F   N+ +VAT    QA  IA++  A   +PV+ + P+ +K AV G G  
Sbjct: 61  QPDIVALERPFAKENRQSVATTM--QAMGIAMVEAARQGLPVAVHTPSEVKAAVSGNGSA 118

Query: 122 DKKQIHMMLKMLM 134
            K Q+  M+  ++
Sbjct: 119 AKAQVQAMVARIL 131


>gi|320450527|ref|YP_004202623.1| crossover junction endodeoxyribonuclease RuvC [Thermus scotoductus
           SA-01]
 gi|320150696|gb|ADW22074.1| crossover junction endodeoxyribonuclease RuvC [Thermus scotoductus
           SA-01]
          Length = 166

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 84/157 (53%), Gaps = 4/157 (2%)

Query: 7   IIGIDPGLRRTGWGIVDVA--GDNLCFVSSGTIVSCVRQSLA-FRLCQLYEGLTDVIKNW 63
           ++GIDPG+   G G+V+V   G     +  G +V    +  A  R+ +++  + + +  +
Sbjct: 3   VLGIDPGITHLGLGVVEVEPKGTLKARLLHGEVVRTSHKEPAQERVGRIHARVKEALARF 62

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            PE  AVE+ F  +      K+G A    +++   A +PV  Y P  +K+A+ G GH  K
Sbjct: 63  HPEALAVEEQFFYRQNELAYKVGWALGAVLVAAFEAGVPVYAYGPMQVKQALAGHGHAGK 122

Query: 124 KQIHMMLK-MLMPESFFKGKDAADALAIAVCHAYHAN 159
           +++ +M++ +L  +   K    ADALAIA+ HA++A 
Sbjct: 123 EEVALMVRGILGLKEAPKPSHLADALAIALTHAFYAK 159


>gi|34558502|ref|NP_908317.1| Holliday junction resolvase [Wolinella succinogenes DSM 1740]
 gi|44888363|sp|Q7M7L1|RUVC_WOLSU RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|34481796|emb|CAE11217.1| CROSSOVER JUNCTION ENDODEOXYRIBONUCLEASE [Wolinella succinogenes]
          Length = 162

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 74/152 (48%), Gaps = 1/152 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + I+GIDPG R  G+ I+         +    ++    ++L  ++ +  EG+  V+KN  
Sbjct: 1   MNILGIDPGSRNCGYAILHHDPKKGNRLVEAGLIKIKERTLQHQILEFVEGIDLVLKNHS 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
            +E A+E +F   +    +KL Q R    L          EY P  +KKA+ G G  DK 
Sbjct: 61  IDEVAIEDIFYAYNPKTVIKLAQFRGALSLKILQDLGNFYEYTPLQVKKALTGHGKADKS 120

Query: 125 QIHMMLKMLMP-ESFFKGKDAADALAIAVCHA 155
           Q+  M+K L+  +   K  D  DA+A+A+ H+
Sbjct: 121 QVAFMVKRLLGLKGEIKPLDITDAIAVAITHS 152


>gi|311739558|ref|ZP_07713393.1| crossover junction endoribonuclease subunit C [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311305374|gb|EFQ81442.1| crossover junction endoribonuclease subunit C [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 221

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/158 (34%), Positives = 85/158 (53%), Gaps = 2/158 (1%)

Query: 3   KSIRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           + +R++GIDPGL R G  +V    G  +  VS G + +   + L  RL +L     + + 
Sbjct: 37  EGMRVMGIDPGLTRCGLSVVQAGRGRAILPVSVGVVRTPSDKDLTERLLRLSVAAKEWMD 96

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
           ++ P+  A+E+VF        ++      + +L+ A   IPV  Y P+ +KKA+ G G  
Sbjct: 97  DYSPDVVAIERVFERGQVSTVMQTAHVVGVLVLAAAERDIPVYMYTPSEVKKAISGNGRA 156

Query: 122 DKKQIHMML-KMLMPESFFKGKDAADALAIAVCHAYHA 158
           DKKQ+  M+ ++L      K  DAADALA+AVCH + A
Sbjct: 157 DKKQMTTMITRILGLTEPPKPADAADALALAVCHCWRA 194


>gi|227503510|ref|ZP_03933559.1| Holliday junction resolvase [Corynebacterium accolens ATCC 49725]
 gi|227076013|gb|EEI13976.1| Holliday junction resolvase [Corynebacterium accolens ATCC 49725]
          Length = 185

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/156 (34%), Positives = 84/156 (53%), Gaps = 2/156 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++GIDPGL R G  +V    G  +  VS G + +   + L  RL +L     + + ++
Sbjct: 1   MRVMGIDPGLTRCGLSVVQAGRGRAILPVSVGVVRTPSDKDLTERLLRLSVAAKEWMDDY 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P+  A+E+VF        ++      + +L+ A   IPV  Y P+ +KKA+ G G  DK
Sbjct: 61  SPDVVAIERVFERGQVSTVMQTAHVVGVLVLAAAERDIPVYMYTPSEVKKAISGNGRADK 120

Query: 124 KQIHMML-KMLMPESFFKGKDAADALAIAVCHAYHA 158
           KQ+  M+ ++L      K  DAADALA+AVCH + A
Sbjct: 121 KQMTTMITRILGLTEPPKPADAADALALAVCHCWRA 156


>gi|302561706|ref|ZP_07314048.1| crossover junction endodeoxyribonuclease RuvC [Streptomyces
           griseoflavus Tu4000]
 gi|302479324|gb|EFL42417.1| crossover junction endodeoxyribonuclease RuvC [Streptomyces
           griseoflavus Tu4000]
          Length = 191

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/156 (36%), Positives = 87/156 (55%), Gaps = 2/156 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G G+V+      L  +  G + +     L  RL  + +GL   +   
Sbjct: 1   MRVLGVDPGLTRCGVGVVEGVAGRPLTMLGVGVVRTPADADLGHRLVAVEQGLEQWLDEH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RPE  AVE+VF   +    +   QA A+AIL  +   IPV+ + P+ +K AV G G  DK
Sbjct: 61  RPEYVAVERVFSQHNVRTVMGTAQASAVAILCASRRGIPVALHTPSEVKAAVTGSGRADK 120

Query: 124 KQI-HMMLKMLMPESFFKGKDAADALAIAVCHAYHA 158
            Q+  M+ ++L  ++  K  DAADALA+A+CH + A
Sbjct: 121 AQVGAMVTRLLRLDAPPKPADAADALALAICHIWRA 156


>gi|184201012|ref|YP_001855219.1| Holliday junction endonuclease RuvC [Kocuria rhizophila DC2201]
 gi|183581242|dbj|BAG29713.1| Holliday junction endonuclease RuvC [Kocuria rhizophila DC2201]
          Length = 222

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 88/154 (57%), Gaps = 2/154 (1%)

Query: 6   RIIGIDPGLRRTGWGIVDVAGDNL-CFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           R++ +DPGL R G+ +VD++      FV      S   ++L  R+  + E   ++++ + 
Sbjct: 11  RVLAVDPGLTRCGFAVVDMSAQRTGTFVHVQVSGSRAHEALERRVLTIMEAAEELMERFA 70

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  AVE+VF   +A   +   QA  + I + A   IPV+ + P+ +K AV G G  DK+
Sbjct: 71  PDVVAVERVFAQNNAPTVVGTAQATGVVIAAAARRGIPVAWHTPSEVKAAVTGDGSADKE 130

Query: 125 QIH-MMLKMLMPESFFKGKDAADALAIAVCHAYH 157
            ++ M++++L  ++  +  DAADALA+AVCH + 
Sbjct: 131 SVNRMVVRILRLDAPPRPADAADALALAVCHGWR 164


>gi|227875449|ref|ZP_03993590.1| crossover junction endodeoxyribonuclease [Mobiluncus mulieris ATCC
           35243]
 gi|269977299|ref|ZP_06184272.1| crossover junction endodeoxyribonuclease RuvC [Mobiluncus mulieris
           28-1]
 gi|306818761|ref|ZP_07452483.1| crossover junction endoribonuclease subunit C [Mobiluncus mulieris
           ATCC 35239]
 gi|307700732|ref|ZP_07637757.1| crossover junction endodeoxyribonuclease RuvC [Mobiluncus mulieris
           FB024-16]
 gi|227844003|gb|EEJ54171.1| crossover junction endodeoxyribonuclease [Mobiluncus mulieris ATCC
           35243]
 gi|269934602|gb|EEZ91163.1| crossover junction endodeoxyribonuclease RuvC [Mobiluncus mulieris
           28-1]
 gi|304648447|gb|EFM45750.1| crossover junction endoribonuclease subunit C [Mobiluncus mulieris
           ATCC 35239]
 gi|307613727|gb|EFN92971.1| crossover junction endodeoxyribonuclease RuvC [Mobiluncus mulieris
           FB024-16]
          Length = 209

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 73/134 (54%), Gaps = 7/134 (5%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQ----SLAFRLCQLYEGLTDVI 60
           +R++GIDPG+ R G G+VD+   ++  V+S   V+ +R     +  FRL ++ EG+   I
Sbjct: 1   MRVLGIDPGITRCGVGVVDI---DVSRVASLVYVAVIRSEPNLATQFRLLKISEGIAATI 57

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             + PE  A+E+ F  ++  +     QA  +A+     A +PV+ + P+ +K AV G G 
Sbjct: 58  TRFSPEIVALERPFAKENRQSVTTTMQAMGVAMAEAGRAGLPVALHTPSEVKAAVSGNGA 117

Query: 121 GDKKQIHMMLKMLM 134
             K Q+  M+  ++
Sbjct: 118 ATKAQVEAMIARIL 131


>gi|322378947|ref|ZP_08053361.1| Crossover junction endodeoxyribonuclease RuvC [Helicobacter suis
           HS1]
 gi|322379801|ref|ZP_08054098.1| Holliday junction resolvase [Helicobacter suis HS5]
 gi|321147769|gb|EFX42372.1| Holliday junction resolvase [Helicobacter suis HS5]
 gi|321148623|gb|EFX43109.1| Crossover junction endodeoxyribonuclease RuvC [Helicobacter suis
           HS1]
          Length = 165

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 79/157 (50%), Gaps = 6/157 (3%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG  + G+GI++  G  L  V +G  +    + L  ++ ++  G   ++K +   
Sbjct: 12  ILGIDPGSSKCGYGIIE--GGKL--VGAG-FIHIKAKHLQAQILEVVAGFEQILKTYAIT 66

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E +F   +    LKL Q R    L         SEY P  +KKA+ G G   K+Q+
Sbjct: 67  EVAMEDIFYAYNPKTVLKLAQFRGALGLKILQEMGHFSEYTPLQVKKAITGHGKASKEQV 126

Query: 127 HMMLKMLMP-ESFFKGKDAADALAIAVCHAYHANSGY 162
             M+K ++  +S  K  D  DA+AIA+ HA    S +
Sbjct: 127 AFMVKKILGIKSAIKPLDITDAIAIALTHAQQNKSPF 163


>gi|119961867|ref|YP_948038.1| Holliday junction resolvase [Arthrobacter aurescens TC1]
 gi|166231577|sp|A1R726|RUVC_ARTAT RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|119948726|gb|ABM07637.1| crossover junction endodeoxyribonuclease RuvC [Arthrobacter
           aurescens TC1]
          Length = 189

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 90/161 (55%), Gaps = 2/161 (1%)

Query: 4   SIRIIGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
           ++R++G+DPGL R G G+VD+  +     V+ G + +    +L  RL  + + + + +  
Sbjct: 2   TLRVLGVDPGLTRCGIGVVDIEKNRRATMVAVGVVGTSAELTLDKRLLVIAQAIDEWLDR 61

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
             P+  AVE+VF   +    + + QA  + I + A   IPV+ + P+ +K AV G G  +
Sbjct: 62  HEPDVVAVERVFSQMNVSTVMGVAQASGVVIAAAARRGIPVALHTPSEVKAAVTGSGTAN 121

Query: 123 KKQI-HMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGY 162
           K  +  ++ K+L  ++  K  DAADALA+A+ HA+ A SG 
Sbjct: 122 KDAVTKLVTKILRLDAPPKPADAADALALALTHAWRAGSGM 162


>gi|256375827|ref|YP_003099487.1| crossover junction endodeoxyribonuclease RuvC [Actinosynnema mirum
           DSM 43827]
 gi|255920130|gb|ACU35641.1| crossover junction endodeoxyribonuclease RuvC [Actinosynnema mirum
           DSM 43827]
          Length = 330

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 69/131 (52%), Gaps = 1/131 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R+ G+DPGL R G+G+VD   G  +  V+   + +   + L+ RL QL + +   +  +
Sbjct: 1   MRVFGVDPGLTRCGFGVVDGGTGRTVRPVAVDVVRTPADEDLSRRLLQLADAVEVWLDRY 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P+  A+E+VF   +    +   QA  I  L+ A   +PV  + P+ +K AV G G  DK
Sbjct: 61  SPDVVAIERVFSQHNVRTAMGTAQAGGIVALAAARRDLPVEFHTPSEVKAAVTGSGRADK 120

Query: 124 KQIHMMLKMLM 134
            Q+  M+  ++
Sbjct: 121 AQVTAMVTKVL 131


>gi|315656669|ref|ZP_07909556.1| crossover junction endoribonuclease subunit C [Mobiluncus curtisii
           subsp. holmesii ATCC 35242]
 gi|315492624|gb|EFU82228.1| crossover junction endoribonuclease subunit C [Mobiluncus curtisii
           subsp. holmesii ATCC 35242]
          Length = 213

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 73/133 (54%), Gaps = 5/133 (3%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLC-FVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++GIDPG+ R G G+VD      C  V    + S    +  FRL ++ +G+ + I  +
Sbjct: 1   MRVLGIDPGITRCGIGVVDFDTSRRCTLVYVDVVRSDPNTATQFRLLKISQGVAEAINRF 60

Query: 64  RPEEAAVEQVFV--NKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
           +P+  A+E+ F   N+ +VAT    QA  IA++  A   +PV+ + P+ +K AV G G  
Sbjct: 61  QPDIVALERPFAKENRQSVATTM--QAMGIAMVEAARQGLPVAVHTPSEVKAAVSGNGSA 118

Query: 122 DKKQIHMMLKMLM 134
            K Q+  M+  ++
Sbjct: 119 AKAQVQAMVARIL 131


>gi|297559813|ref|YP_003678787.1| crossover junction endodeoxyribonuclease RuvC [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
 gi|296844261|gb|ADH66281.1| crossover junction endodeoxyribonuclease RuvC [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 185

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 85/159 (53%), Gaps = 2/159 (1%)

Query: 3   KSIRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           + +R++GIDPGL R G   V+ A G  L  + +  + +     L  RL  +  G+ + + 
Sbjct: 2   RRVRVLGIDPGLTRCGVAAVEGAIGRPLTLLGADAVRTSPDTDLPHRLVGIERGIEEWLD 61

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
            ++P+  AVE+VF   +    +   QA  IA++  A   +PV+ + P+  K A+ G G  
Sbjct: 62  RYQPDAVAVERVFAQHNLSTVMGTAQASGIALVCAARRGLPVAMHTPSEAKAAITGNGRA 121

Query: 122 DKKQIHMML-KMLMPESFFKGKDAADALAIAVCHAYHAN 159
           DK Q+  M+ ++L  +   K  DAADA+A+A+CH +   
Sbjct: 122 DKAQVGTMVARILGLDGPPKPADAADAVALAICHIWRGG 160


>gi|300934560|ref|ZP_07149816.1| Holliday junction resolvase [Corynebacterium resistens DSM 45100]
          Length = 208

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 52/156 (33%), Positives = 85/156 (54%), Gaps = 2/156 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++GIDPGL R G  +V    G  +  V+ G + +    SL  RL +L   + + +  +
Sbjct: 43  LRVMGIDPGLTRCGLSVVQAGRGRAVLPVAVGVVRTPASDSLTSRLLRLSNAVEEWMDEY 102

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +P+  A+E+VF   +    +    A  + +L+ A   + V  Y P+ +KKA+ G G  DK
Sbjct: 103 KPDVVALERVFERSNVSTVMNTAHASGVLMLAAAKRGLDVHMYTPSEVKKAITGNGRADK 162

Query: 124 KQI-HMMLKMLMPESFFKGKDAADALAIAVCHAYHA 158
            Q+ +M+ ++L      K  DAADALA+AVCH + A
Sbjct: 163 PQMTNMVTRILGLGEPPKPADAADALALAVCHCWRA 198


>gi|291440763|ref|ZP_06580153.1| holliday junction resolvase [Streptomyces ghanaensis ATCC 14672]
 gi|291343658|gb|EFE70614.1| holliday junction resolvase [Streptomyces ghanaensis ATCC 14672]
          Length = 188

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 71/132 (53%), Gaps = 1/132 (0%)

Query: 4   SIRIIGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
           ++R++G+DPGL R G G+V+      L  +  G + +     L  RL  L +GL   ++ 
Sbjct: 12  AVRVLGVDPGLTRCGVGVVEGVAGRPLTMLGVGVVRTPAGADLGHRLVVLEQGLEQWLEE 71

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
            RPE  AVE+VF   +    +   QA A+A+L  +   IPV+ + P+ +K AV G G  D
Sbjct: 72  HRPEYVAVERVFSQHNVRTVMGTAQASAVALLCASRRGIPVALHTPSEVKAAVTGSGRAD 131

Query: 123 KKQIHMMLKMLM 134
           K Q+  M+  L+
Sbjct: 132 KAQVGAMVTRLL 143


>gi|227833243|ref|YP_002834950.1| crossover junction endodeoxyribonuclease [Corynebacterium
           aurimucosum ATCC 700975]
 gi|227454259|gb|ACP33012.1| crossover junction endodeoxyribonuclease [Corynebacterium
           aurimucosum ATCC 700975]
          Length = 226

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 53/158 (33%), Positives = 87/158 (55%), Gaps = 2/158 (1%)

Query: 3   KSIRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           + +R++GIDPGL R G  +V    G  +  ++ G + +   + L  RL  L   + + + 
Sbjct: 27  EGLRVMGIDPGLTRCGLSVVQAGRGRGVIPIAVGVVRTPSDKDLGERLKLLSVAVREWMD 86

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
           +++P+  A+E+VF        ++   A  + +L+ A   IPV  Y P+ +KKA+ G G  
Sbjct: 87  DYKPDVVALERVFERGQVSTVMQTAHAVGVLVLAAAERDIPVHMYTPSEVKKAISGNGRA 146

Query: 122 DKKQIHMML-KMLMPESFFKGKDAADALAIAVCHAYHA 158
           DKKQ+  M+ ++L      K  DAADALA+AVCH + A
Sbjct: 147 DKKQMTAMITRILGLSEAPKPADAADALALAVCHCWRA 184


>gi|163840743|ref|YP_001625148.1| Holliday junction resolvase [Renibacterium salmoninarum ATCC 33209]
 gi|189046075|sp|A9WSE6|RUVC_RENSM RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|162954219|gb|ABY23734.1| crossover junction endodeoxyribonuclease [Renibacterium
           salmoninarum ATCC 33209]
          Length = 193

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/131 (32%), Positives = 69/131 (52%), Gaps = 1/131 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGD-NLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R+ G+DPGL R G+G+VDVA + +   V+ G I S     L+ RL  + E +   +   
Sbjct: 1   MRVFGVDPGLTRCGFGVVDVAANRSASLVAVGVIGSSSELPLSQRLLVISESIDQWLDTH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P+  AVE+VF   +    + + QA  I I + A   I V+ + P+ +K AV G G  DK
Sbjct: 61  SPDVLAVERVFSQTNLSTVMGVAQASGIVIAAAAKRGIAVALHTPSEVKAAVTGNGRADK 120

Query: 124 KQIHMMLKMLM 134
             +  M+  ++
Sbjct: 121 IAVTAMVTRIL 131


>gi|29833375|ref|NP_828009.1| Holliday junction resolvase [Streptomyces avermitilis MA-4680]
 gi|44888447|sp|Q820F5|RUVC_STRAW RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|29610498|dbj|BAC74544.1| putative Holliday junction nuclease [Streptomyces avermitilis
           MA-4680]
          Length = 176

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 56/158 (35%), Positives = 88/158 (55%), Gaps = 2/158 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G G+V+      L     G + +     L  RL  + +G+   +  +
Sbjct: 1   MRVLGVDPGLTRCGVGVVEGVAGRPLTMRGVGVVRTPADAELGLRLVAIEQGIEQWLDEY 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RPE  AVE+VF   +    +   QA A+A+L  A   IPV+ + P+ +K AV G G  DK
Sbjct: 61  RPECVAVERVFSQHNVRTVMGTAQASAVAMLCAARRGIPVALHTPSEVKAAVTGSGRADK 120

Query: 124 KQI-HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
            Q+  M+ ++L  ++  K  DAADALA+A+CH + A +
Sbjct: 121 AQVGAMVTRLLRLDAPPKPADAADALALAICHIWRAPA 158


>gi|262184229|ref|ZP_06043650.1| crossover junction endodeoxyribonuclease [Corynebacterium
           aurimucosum ATCC 700975]
          Length = 203

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 53/158 (33%), Positives = 87/158 (55%), Gaps = 2/158 (1%)

Query: 3   KSIRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           + +R++GIDPGL R G  +V    G  +  ++ G + +   + L  RL  L   + + + 
Sbjct: 4   EGLRVMGIDPGLTRCGLSVVQAGRGRGVIPIAVGVVRTPSDKDLGERLKLLSVAVREWMD 63

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
           +++P+  A+E+VF        ++   A  + +L+ A   IPV  Y P+ +KKA+ G G  
Sbjct: 64  DYKPDVVALERVFERGQVSTVMQTAHAVGVLVLAAAERDIPVHMYTPSEVKKAISGNGRA 123

Query: 122 DKKQIHMML-KMLMPESFFKGKDAADALAIAVCHAYHA 158
           DKKQ+  M+ ++L      K  DAADALA+AVCH + A
Sbjct: 124 DKKQMTAMITRILGLSEAPKPADAADALALAVCHCWRA 161


>gi|116330277|ref|YP_799995.1| crossover junction endoribonuclease [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
 gi|116123966|gb|ABJ75237.1| Crossover junction endoribonuclease [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
          Length = 166

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 81/148 (54%), Gaps = 1/148 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RIIGIDPG  R G+ +++     +  ++ GT+           L  L +GLT+++K ++
Sbjct: 1   MRIIGIDPGSHRAGYAVLEKTASKIRILAYGTVEVPSGTPSPNNLLVLRKGLTEILKEFK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P  A+VE++F  K+     ++ ++R + +++ A   I + E   + IKK   G G  DKK
Sbjct: 61  PSIASVEEMFFAKNKKTASRVFESRGVLLVTLAEMNIQILEPTVSQIKKGTTGSGTADKK 120

Query: 125 QIHMMLKMLMPESFFKGKDAA-DALAIA 151
           QI   LK+L+     KG D + DA+A A
Sbjct: 121 QIRQALKLLLDIDLLKGHDDSWDAVAAA 148


>gi|183222663|ref|YP_001840659.1| putative crossover junction endodeoxyribonuclease RuvC [Leptospira
           biflexa serovar Patoc strain 'Patoc 1 (Paris)']
 gi|189912695|ref|YP_001964250.1| crossover junction endoribonuclease [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167777371|gb|ABZ95672.1| Crossover junction endoribonuclease [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167781085|gb|ABZ99383.1| Putative crossover junction endodeoxyribonuclease RuvC (Holliday
           junction nuclease ruvC) [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
          Length = 158

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 78/151 (51%), Gaps = 4/151 (2%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGD---NLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           ++IIGIDPG  R G+ ++        N   ++ GTI    +      L Q+   L  ++ 
Sbjct: 1   MKIIGIDPGSHRVGYAVLSFPEGMRRNPELLAYGTIEVAPKTPSPVNLLQIRSELQKILS 60

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
            ++PE AAVE++F  ++    +K+ ++R + +L+    +IP+       IKK +   G+ 
Sbjct: 61  LYQPEHAAVEELFFVQNTTTGMKVSESRGVILLTLGENQIPMVSLTATQIKKGISAKGNA 120

Query: 122 DKKQIHMMLKMLMPESFFKGKDAA-DALAIA 151
            KK++   ++M++     KG D + DA+A A
Sbjct: 121 TKKEVRAAIQMILGFKDLKGHDDSWDAIACA 151


>gi|254411422|ref|ZP_05025199.1| crossover junction endodeoxyribonuclease RuvC [Microcoleus
           chthonoplastes PCC 7420]
 gi|196181923|gb|EDX76910.1| crossover junction endodeoxyribonuclease RuvC [Microcoleus
           chthonoplastes PCC 7420]
          Length = 171

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 72/136 (52%), Gaps = 15/136 (11%)

Query: 6   RIIGIDPGLRRTGWG----------IVDVAG----DNLCFVSSGTIVSCVRQSLAFRLCQ 51
           RI+G+DPGL   G+G          +  V G    +++  +  G I +  R  L  RLC 
Sbjct: 4   RILGLDPGLAILGFGAIICQAEVKPMTKVRGKSTSESVQLLDFGVIQTPARTELGKRLCT 63

Query: 52  LYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTI 111
           +YE L  +++  +P+  AVE++F  +    T+ + QAR +  L  A  ++P+ E+ P  +
Sbjct: 64  IYEDLHTILEQCQPDLVAVEKLFFYRMG-NTITVAQARGVVTLVLAQHQVPMVEFTPGQV 122

Query: 112 KKAVIGVGHGDKKQIH 127
           K+A+ G G+ DK ++ 
Sbjct: 123 KQALTGYGNADKHEVQ 138


>gi|220906354|ref|YP_002481665.1| Holliday junction resolvase [Cyanothece sp. PCC 7425]
 gi|254767468|sp|B8HX01|RUVC_CYAP4 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|219862965|gb|ACL43304.1| crossover junction endodeoxyribonuclease RuvC [Cyanothece sp. PCC
           7425]
          Length = 157

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 72/124 (58%), Gaps = 2/124 (1%)

Query: 6   RIIGIDPGLRRTGWGIVDVAGD-NLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           RI+G+DPGL   G+G + V  D +L  +  G I +   + +  RL  +YE L  ++++++
Sbjct: 4   RILGLDPGLATLGFGSITVQPDESLQVLDFGVIKTAAGEEIGSRLLTIYEDLHTLLQHFQ 63

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  A+E+ F  + +  T+ + QAR + +L  A   + + E+ P  +K+ + G G+ DK+
Sbjct: 64  PDLVAIEKFFFYRMS-NTILVAQARGVILLVLAQHHLALMEFTPAQVKQTLTGHGNADKQ 122

Query: 125 QIHM 128
           ++ +
Sbjct: 123 EVQL 126


>gi|327398527|ref|YP_004339396.1| crossover junction endodeoxyribonuclease RuvC [Hippea maritima DSM
           10411]
 gi|327181156|gb|AEA33337.1| crossover junction endodeoxyribonuclease RuvC [Hippea maritima DSM
           10411]
          Length = 154

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 75/151 (49%), Gaps = 4/151 (2%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+G+DPG   T  G +D       F     I    + S   ++  ++E L + IKN++P 
Sbjct: 3   ILGVDPGSSITACGFIDPTTKKTDF---DFIKFKQKTSQEEKIFGVFEFLDNAIKNFKPN 59

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E  VE  F + +  + + L + +A  I++     + V +Y P  IK+A+ G G  DK Q+
Sbjct: 60  EVVVESPFYSVNIKSAMVLSEIKAAVIIAAKQNNLKVFQYTPRQIKQAICGYGAADKNQV 119

Query: 127 HMML-KMLMPESFFKGKDAADALAIAVCHAY 156
             +L K L      +  D +DALA+A+ H Y
Sbjct: 120 RFVLEKTLNINLKDEPLDVSDALAVALTHIY 150


>gi|255068675|ref|ZP_05320530.1| crossover junction endodeoxyribonuclease RuvC [Neisseria sicca
          ATCC 29256]
 gi|255047075|gb|EET42539.1| crossover junction endodeoxyribonuclease RuvC [Neisseria sicca
          ATCC 29256]
          Length = 82

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 55/82 (67%)

Query: 1  MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
          M  ++RI+GIDPG R TG+G++DV G +  +V+SG I +     LA R+  +   + +V+
Sbjct: 1  MAATVRILGIDPGSRVTGFGVIDVRGRDHFYVASGCIKTPADAPLADRIAVIVRHIGEVV 60

Query: 61 KNWRPEEAAVEQVFVNKDAVAT 82
            ++P++AAVEQVFVN +  +T
Sbjct: 61 AVYKPQQAAVEQVFVNVNPAST 82


>gi|62390543|ref|YP_225945.1| Holliday junction resolvase [Corynebacterium glutamicum ATCC 13032]
 gi|41325881|emb|CAF20044.1| CROSSOVER JUNCTION ENDODEOXYRIBONUCLEASE [Corynebacterium
           glutamicum ATCC 13032]
          Length = 213

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 54/153 (35%), Positives = 84/153 (54%), Gaps = 2/153 (1%)

Query: 8   IGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           +GIDPGL R G  +V    G  +  VS G + +     LA RL +L + + + +  + P+
Sbjct: 1   MGIDPGLTRCGLSVVQAGRGRTVYPVSVGVVRTPPDAELAERLLRLSKAVGEWMDEYTPD 60

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+E+VF   +    +    A  + IL+ A   +PV  Y P+ +KKA+ G G  DKKQ+
Sbjct: 61  VIAIERVFERGNVSTVMNTAHAVGVLILAAAERGLPVHMYTPSEVKKAISGNGRADKKQM 120

Query: 127 HMML-KMLMPESFFKGKDAADALAIAVCHAYHA 158
            +M+ ++L      K  DAADAL++AVCH + A
Sbjct: 121 TVMITRILGLGEPPKPADAADALSLAVCHCWRA 153


>gi|172040614|ref|YP_001800328.1| Holliday junction resolvase [Corynebacterium urealyticum DSM 7109]
 gi|171851918|emb|CAQ04894.1| ruvC [Corynebacterium urealyticum DSM 7109]
          Length = 202

 Score = 71.6 bits (174), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 67/130 (51%), Gaps = 1/130 (0%)

Query: 6   RIIGIDPGLRRTGWGIVDVAGDNLCF-VSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           R++GIDPGL R G  +V        F V+ G + +     L  RL +LY  +++ I ++ 
Sbjct: 40  RVMGIDPGLTRCGLSVVQAGQGRAVFPVAVGVVRTESHVPLEQRLQRLYRAVSEWIADYS 99

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  A+E+VF   +    +    A  + +L+ A   + V  Y P+ +KKA+ G G  DK 
Sbjct: 100 PDVVAIERVFERSNVSTVMNTAHASGVLMLAAAERGLAVESYTPSEVKKAISGNGRADKA 159

Query: 125 QIHMMLKMLM 134
           Q+  M+  ++
Sbjct: 160 QMTKMITRIL 169


>gi|269956458|ref|YP_003326247.1| crossover junction endodeoxyribonuclease RuvC [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269305139|gb|ACZ30689.1| crossover junction endodeoxyribonuclease RuvC [Xylanimonas
           cellulosilytica DSM 15894]
          Length = 199

 Score = 71.6 bits (174), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 70/131 (53%), Gaps = 1/131 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVD-VAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G G+VD + G     VS G I S    S+  RL  +   L + +   
Sbjct: 1   MRVLGVDPGLTRCGVGVVDSLPGRRAQLVSVGVIRSDPAASVDLRLLTVARELDEWLDAH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P+  AVE+VF   +    +   Q   +A+++ A   +PV+ + P+ +K AV G G   K
Sbjct: 61  VPDVVAVERVFAQHNVGTVMGTAQVAGLAMVAAARRGVPVALHTPSEVKAAVTGSGRAGK 120

Query: 124 KQIHMMLKMLM 134
           +Q+  M++ L+
Sbjct: 121 EQVQRMVQSLL 131


>gi|297183319|gb|ADI19456.1| holliday junction resolvasome, endonuclease subunit [uncultured
           bacterium HF0500_16O16]
          Length = 132

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 39/104 (37%), Positives = 62/104 (59%), Gaps = 1/104 (0%)

Query: 52  LYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTI 111
           +++G+ +V++  +P+  A+E  F  KDA A  KLG+AR +  L+  L  I    Y+P  I
Sbjct: 1   MFDGVNEVLQTHKPDAVAIEGSFYGKDADAAAKLGEARGVLRLAVTLTGIESVVYSPAEI 60

Query: 112 KKAVIGVGHGDKKQI-HMMLKMLMPESFFKGKDAADALAIAVCH 154
           KKA+ G G   K+ + +M+ + L  +      DA+DALAIA+CH
Sbjct: 61  KKALTGNGQATKESVQYMVAQTLKMKKLPTPLDASDALAIALCH 104


>gi|296122691|ref|YP_003630469.1| crossover junction endodeoxyribonuclease RuvC [Planctomyces
           limnophilus DSM 3776]
 gi|296015031|gb|ADG68270.1| crossover junction endodeoxyribonuclease RuvC [Planctomyces
           limnophilus DSM 3776]
          Length = 170

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 84/158 (53%), Gaps = 9/158 (5%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP- 65
           IIGIDPGL  TG+ ++   G  L    +G I S    SLA R+ ++  GL +V+ +++  
Sbjct: 3   IIGIDPGLNTTGYAVLACHGRQLVLHEAGVIRSTKGCSLASRVTEIGRGLREVLADYQSA 62

Query: 66  ----EEAAVEQVFVNKDAVAT-LKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
                  A+EQVF +     T + +  AR   + + + A IP+  Y P  IK  + G G 
Sbjct: 63  GHELRAIAIEQVFSHTSFPKTAILMAHARGAILYAASEANIPIVHYMPRQIKSLLTGSGK 122

Query: 121 GDKKQIH--MMLKMLMPESFFKGKDAADALAIAVCHAY 156
             K+Q+   + L++ +P S  +  D ADA AIAVCHA+
Sbjct: 123 ASKEQVQRAVQLELKLP-SILEPNDVADAAAIAVCHAF 159


>gi|296129640|ref|YP_003636890.1| crossover junction endodeoxyribonuclease RuvC [Cellulomonas
           flavigena DSM 20109]
 gi|296021455|gb|ADG74691.1| crossover junction endodeoxyribonuclease RuvC [Cellulomonas
           flavigena DSM 20109]
          Length = 188

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 67/131 (51%), Gaps = 1/131 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVD-VAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G G+VD + G     V      S     +  RL  +   L + ++  
Sbjct: 1   MRVLGVDPGLTRCGLGVVDGLPGRRARLVHVSVARSEPGLDVDQRLLLIERALEECLEEH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P+  AVE+VF   +    +   Q   +A+++ A  R+PV+ + P+ +K AV G G  DK
Sbjct: 61  APDAVAVERVFAQHNVSTVMGTAQVAGLAMVAAARRRVPVALHTPSEVKAAVTGSGRADK 120

Query: 124 KQIHMMLKMLM 134
            Q+  M+  L+
Sbjct: 121 AQVQTMVARLL 131


>gi|254424620|ref|ZP_05038338.1| Crossover junction endodeoxyribonuclease RuvC superfamily
           [Synechococcus sp. PCC 7335]
 gi|196192109|gb|EDX87073.1| Crossover junction endodeoxyribonuclease RuvC superfamily
           [Synechococcus sp. PCC 7335]
          Length = 157

 Score = 71.2 bits (173), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 80/153 (52%), Gaps = 11/153 (7%)

Query: 10  IDPGLRRTGWGIV--------DVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           +DPGL   G+G++        D+  D +  +  G + +  R     RLC +Y  L  VI 
Sbjct: 1   MDPGLAILGFGVLEYDPAKMRDLMPD-IRVIDYGIVQTPARTDTGQRLCTIYNDLHSVID 59

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
            ++P+  ++E++F  +    T+ + QAR + +L  A   +P  E+ P  IK+++ G G+ 
Sbjct: 60  EYKPDLVSIEKLFFYRMG-NTILVAQARGVVMLVLAQCNLPFVEFTPAQIKQSITGHGNA 118

Query: 122 DKKQIH-MMLKMLMPESFFKGKDAADALAIAVC 153
           DK ++   + + L  E+  K  DAAD LA+A+ 
Sbjct: 119 DKVEVQDAVARELNLEAIPKPDDAADGLAVALT 151


>gi|320011891|gb|ADW06741.1| crossover junction endodeoxyribonuclease RuvC [Streptomyces
           flavogriseus ATCC 33331]
          Length = 177

 Score = 71.2 bits (173), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 56/158 (35%), Positives = 87/158 (55%), Gaps = 2/158 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G G+V+      L  V  G + +     L  RL  +  G+   +   
Sbjct: 1   MRVLGVDPGLTRCGVGVVEGVAGRPLTMVGVGVVRTPADAELGHRLVAIERGIEQWLDEH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RPE  AVE+VF   +    +   QA A+A+L  +   IPV+ + P+ +K AV G G  DK
Sbjct: 61  RPEYVAVERVFAQHNVRTVMGTAQASAVAMLCASRRGIPVALHTPSEVKAAVTGSGRADK 120

Query: 124 KQI-HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
            Q+  M+ ++L  ++  K  DAADALA+A+CH + A +
Sbjct: 121 AQVGAMVTRLLRLDAPPKPADAADALALAICHIWRAPA 158


>gi|297623207|ref|YP_003704641.1| crossover junction endodeoxyribonuclease RuvC [Truepera
           radiovictrix DSM 17093]
 gi|297164387|gb|ADI14098.1| crossover junction endodeoxyribonuclease RuvC [Truepera
           radiovictrix DSM 17093]
          Length = 168

 Score = 71.2 bits (173), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 76/158 (48%), Gaps = 9/158 (5%)

Query: 2   RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           R  + ++G+DPGL   G G V   G  +  + +  + +      + RL  LY  ++    
Sbjct: 5   RPPLTVVGLDPGLANLGLGAVREVGRAVTLLGAKLVRTSPSAEQSARLETLYREVSRFFA 64

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
            + P+  A+E  + ++      K+GQA  + +L+     + V EY P  +K+A++G G  
Sbjct: 65  LYEPDVLALEGQYFHRQREVAFKVGQACGVCLLAAQEHGLEVVEYGPMQVKQALVGTGRA 124

Query: 122 DKKQIHMMLKMLM-----PESFFKGKDAADALAIAVCH 154
            K Q+  M++  +     PES       ADALA+A+ H
Sbjct: 125 SKAQVGYMVRATLGLKETPES----HHVADALALALTH 158


>gi|326773259|ref|ZP_08232542.1| crossover junction endodeoxyribonuclease RuvC [Actinomyces viscosus
           C505]
 gi|326636489|gb|EGE37392.1| crossover junction endodeoxyribonuclease RuvC [Actinomyces viscosus
           C505]
          Length = 223

 Score = 71.2 bits (173), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 52/156 (33%), Positives = 82/156 (52%), Gaps = 2/156 (1%)

Query: 6   RIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           R++GIDPGL R G G VDV     +  V  G + +   QS   RL  + E + D I    
Sbjct: 19  RVLGIDPGLTRCGLGCVDVDPRRQVRLVEVGVVRTPPSQSPELRLLTITEAIEDWIARLG 78

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P   ++E+VF   +  + + + Q    A+ + A A + V+++ P+  K AV G G  DK 
Sbjct: 79  PSVVSIERVFAQDNLRSVIGVAQVMGTAMATAARAGLEVAQHTPSEAKAAVTGSGTADKA 138

Query: 125 QIH-MMLKMLMPESFFKGKDAADALAIAVCHAYHAN 159
           Q+  M+ ++L  ++  +  DAADALA A+CH +   
Sbjct: 139 QVQAMVTRILGLDAPPRPADAADALAQAICHGWRGG 174


>gi|75906340|ref|YP_320636.1| Holliday junction resolvase [Anabaena variabilis ATCC 29413]
 gi|123758952|sp|Q3MGZ5|RUVC_ANAVT RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|75700065|gb|ABA19741.1| Holliday junction endonuclease RuvC [Anabaena variabilis ATCC
           29413]
          Length = 163

 Score = 71.2 bits (173), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 69/129 (53%), Gaps = 8/129 (6%)

Query: 6   RIIGIDPGLRRTGWG-------IVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTD 58
           RI+G+DPGL   G+G       +  +    +  +  G I +     +  RLC L++ L  
Sbjct: 4   RILGLDPGLAILGFGAITCTPGLTQLQSTKVNILDFGVIKTSADIEIGQRLCTLFDDLHT 63

Query: 59  VIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGV 118
           VI N +P+  A+E++F  + + +T+ + QAR + +L+ A   +P  E+ P  +K A+ G 
Sbjct: 64  VIDNLQPDVVAIEKLFFYRMS-STIVVAQARGVVMLALAQHHLPYVEFTPAQVKLALTGY 122

Query: 119 GHGDKKQIH 127
           G+ DK ++ 
Sbjct: 123 GNADKSEVQ 131


>gi|297155807|gb|ADI05519.1| Holliday junction resolvase [Streptomyces bingchenggensis BCW-1]
          Length = 177

 Score = 70.9 bits (172), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 57/158 (36%), Positives = 90/158 (56%), Gaps = 2/158 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G G+VD      L  +  G I +     +  RL ++  GL + ++  
Sbjct: 1   MRVLGVDPGLTRCGVGVVDGVAGRPLRMIGVGVIRTPADAPIGDRLVEIERGLEEWLEAH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RPE  AVE+VF   +    +   QA A+A+L  A   +PV+ + P+ +K AV G G  DK
Sbjct: 61  RPEVVAVERVFSQHNVQTVMGTAQASAVAMLCAARRGLPVALHTPSEVKAAVTGSGRADK 120

Query: 124 KQI-HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
            Q+  M+ ++L  ++  K  DAADALA+A+CH + A +
Sbjct: 121 AQVGSMVTRLLRLDAPPKPADAADALALAICHIWRAPA 158


>gi|86607987|ref|YP_476749.1| Holliday junction resolvase [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|123751722|sp|Q2JP15|RUVC_SYNJB RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|86556529|gb|ABD01486.1| crossover junction endodeoxyribonuclease RuvC [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 168

 Score = 70.9 bits (172), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 66/121 (54%), Gaps = 1/121 (0%)

Query: 6   RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           RI+G+DPGL   G+G +      L  V  G I +  + S+  RL  L+E L+ +++  RP
Sbjct: 14  RILGLDPGLGTMGFGCILAGSAGLKPVDYGVISTPSQHSMPERLQTLHEDLSQLLRQLRP 73

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
            +  +E++F  K    T+ + QAR + +L+ A   +   E+ P  +K+++ G G  DK+ 
Sbjct: 74  HQVGLEKLFFYKMG-NTIAIAQARGVILLTLAQHHLLPVEFTPAQVKQSLTGYGRADKQA 132

Query: 126 I 126
           +
Sbjct: 133 V 133


>gi|38233962|ref|NP_939729.1| Holliday junction resolvase [Corynebacterium diphtheriae NCTC
           13129]
 gi|81564835|sp|Q6NGX3|RUVC_CORDI RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|38200224|emb|CAE49908.1| crossover junction endodeoxyribonuclease [Corynebacterium
           diphtheriae]
          Length = 163

 Score = 70.9 bits (172), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 52/153 (33%), Positives = 83/153 (54%), Gaps = 2/153 (1%)

Query: 8   IGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           +GIDPGL R G  +V    G ++  V+ G + +     L+ RL +L E +   I  ++P+
Sbjct: 1   MGIDPGLTRCGLSVVQAGKGRSVIPVAVGVVRTPPHAELSQRLLELSEAVNSWIDEYQPD 60

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+E++F   +    +       + +L+ A   +PV  Y P+ +KKA+ G G  DKKQ+
Sbjct: 61  VVAIERIFERGNVSTVMNTAHGVGVLVLAAAQRGLPVHMYTPSEVKKAISGNGRADKKQM 120

Query: 127 HMML-KMLMPESFFKGKDAADALAIAVCHAYHA 158
             M+ ++L      K  DAADALA+AVCH + A
Sbjct: 121 TAMITRILGLVEAPKPADAADALALAVCHCWRA 153


>gi|304436499|ref|ZP_07396473.1| crossover junction endoribonuclease subunit C [Selenomonas sp. oral
           taxon 149 str. 67H29BP]
 gi|304370545|gb|EFM24196.1| crossover junction endoribonuclease subunit C [Selenomonas sp. oral
           taxon 149 str. 67H29BP]
          Length = 126

 Score = 70.9 bits (172), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 39/111 (35%), Positives = 69/111 (62%), Gaps = 3/111 (2%)

Query: 48  RLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYA 107
           RL +++  L ++I+ +RP+   VEQ+F N++    + +GQAR + +L+ A   + + E  
Sbjct: 6   RLLKIHTVLDELIQKYRPDAMGVEQLFFNRNVTTAIPVGQARGVVLLAAAKNNLLLIERT 65

Query: 108 PNTIKKAVIGVGHGDKKQ-IHMMLKML-MPESFFKGKDAADALAIAVCHAY 156
           P  +K++V G G   K+Q I+M+ K+L +PE+     D ADALA+A+  A+
Sbjct: 66  PLQVKQSVTGYGKATKEQVIYMVTKLLHLPEAPHPD-DTADALAVAISAAH 115


>gi|282864189|ref|ZP_06273245.1| crossover junction endodeoxyribonuclease RuvC [Streptomyces sp.
           ACTE]
 gi|282560676|gb|EFB66222.1| crossover junction endodeoxyribonuclease RuvC [Streptomyces sp.
           ACTE]
          Length = 177

 Score = 70.9 bits (172), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 57/156 (36%), Positives = 86/156 (55%), Gaps = 2/156 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G G+V+      L  V  G + +     L  RL  +  G+   +   
Sbjct: 1   MRVLGVDPGLTRCGVGVVEGVAGRPLTMVGVGVVRTPSDAELGHRLVAVERGIEQWLDEH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RPE  AVE+VF   +    +   QA A+A+L  A   IPV+ + P+ +K AV G G  DK
Sbjct: 61  RPEFVAVERVFSQHNVSTVMGTAQASAVAMLCAARRGIPVALHTPSEVKAAVTGSGRADK 120

Query: 124 KQI-HMMLKMLMPESFFKGKDAADALAIAVCHAYHA 158
            Q+  M+ ++L  ++  K  DAADALA+A+CH + A
Sbjct: 121 AQVGAMVTRLLRLDAPPKPADAADALALAICHIWRA 156


>gi|256832602|ref|YP_003161329.1| crossover junction endodeoxyribonuclease RuvC [Jonesia
           denitrificans DSM 20603]
 gi|256686133|gb|ACV09026.1| crossover junction endodeoxyribonuclease RuvC [Jonesia
           denitrificans DSM 20603]
          Length = 190

 Score = 70.9 bits (172), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 71/131 (54%), Gaps = 1/131 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVD-VAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G G+VD +AG     V+ G   S   +S+  RL  + + L + +   
Sbjct: 1   MRVLGVDPGLTRCGIGVVDSIAGRRARLVAVGVARSTHTESIDVRLLAISQQLDEWLDRH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P+  A+E+VF   +    +   Q   +A+++ A   +PV+ + P+ +K AV G G   K
Sbjct: 61  IPDVVAIERVFAQNNLSTVMGTAQVAGLAMVAAAKRGVPVALHTPSEVKAAVTGHGGAHK 120

Query: 124 KQIHMMLKMLM 134
           +Q+  M+  ++
Sbjct: 121 EQVQRMVANIL 131


>gi|86740075|ref|YP_480475.1| Holliday junction resolvase [Frankia sp. CcI3]
 gi|123737624|sp|Q2JD96|RUVC_FRASC RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|86566937|gb|ABD10746.1| Holliday junction endonuclease RuvC [Frankia sp. CcI3]
          Length = 172

 Score = 70.9 bits (172), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 46/131 (35%), Positives = 69/131 (52%), Gaps = 1/131 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGD-NLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G G+VD         V  G + +     +A RLC + +G+   +   
Sbjct: 1   MRVLGVDPGLTRCGLGVVDGGLGIRAHLVEVGVVRTPATAEVAERLCAVSDGIDAWLDRT 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RPE  AVE+VF   +    +   QA A+AI+  A   +PV  Y P+ +K AV G G  DK
Sbjct: 61  RPEAVAVEKVFSQANMRTVMGTAQAGAVAIVLAARRGLPVGLYTPSEVKAAVTGSGRADK 120

Query: 124 KQIHMMLKMLM 134
            Q+  M+  L+
Sbjct: 121 AQVSFMITRLL 131


>gi|239932396|ref|ZP_04689349.1| Holliday junction resolvase [Streptomyces ghanaensis ATCC 14672]
          Length = 176

 Score = 70.9 bits (172), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 45/131 (34%), Positives = 70/131 (53%), Gaps = 1/131 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G G+V+      L  +  G + +     L  RL  L +GL   ++  
Sbjct: 1   MRVLGVDPGLTRCGVGVVEGVAGRPLTMLGVGVVRTPAGADLGHRLVVLEQGLEQWLEEH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RPE  AVE+VF   +    +   QA A+A+L  +   IPV+ + P+ +K AV G G  DK
Sbjct: 61  RPEYVAVERVFSQHNVRTVMGTAQASAVALLCASRRGIPVALHTPSEVKAAVTGSGRADK 120

Query: 124 KQIHMMLKMLM 134
            Q+  M+  L+
Sbjct: 121 AQVGAMVTRLL 131


>gi|269795057|ref|YP_003314512.1| Holliday junction endonuclease RuvC [Sanguibacter keddieii DSM
           10542]
 gi|269097242|gb|ACZ21678.1| Holliday junction endonuclease RuvC [Sanguibacter keddieii DSM
           10542]
          Length = 189

 Score = 70.9 bits (172), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 69/131 (52%), Gaps = 1/131 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVD-VAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G G+VD V G     V+ G  +S    ++  RL Q+   L   +   
Sbjct: 1   MRVLGVDPGLTRCGIGVVDSVTGRRARLVAVGVAMSPPTDTVDARLLQIATELDAWMDAH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P+  AVE+VF   +    +   Q   +A+++ A   +PV+ + P+ +K AV G G   K
Sbjct: 61  TPDVVAVERVFAQHNVSTVMGTAQVAGLAMVAAARRGVPVAMHTPSEVKAAVTGSGRAGK 120

Query: 124 KQIHMMLKMLM 134
           +Q+  M+  ++
Sbjct: 121 EQVQKMVAQIL 131


>gi|325971234|ref|YP_004247425.1| Crossover junction endodeoxyribonuclease ruvC [Spirochaeta sp.
           Buddy]
 gi|324026472|gb|ADY13231.1| Crossover junction endodeoxyribonuclease ruvC [Spirochaeta sp.
           Buddy]
          Length = 163

 Score = 70.9 bits (172), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 68/130 (52%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPG  +TGWG+V+  G +   VS G I +   Q    R+  + + +  +    +
Sbjct: 1   MRILGIDPGYAQTGWGVVESDGQHNRPVSFGVIKTSPTQPDCERIHFIAKSIGALALENK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
                +E +F  K+  + + + +     I   AL  IPV  Y+P TIK AV G G  +K 
Sbjct: 61  VTICGMEDIFFTKNVSSAIPVAKVIGACIHQLALLEIPVRLYSPPTIKSAVTGYGGAEKH 120

Query: 125 QIHMMLKMLM 134
           Q+  M+++L+
Sbjct: 121 QVQEMVRILL 130


>gi|293192651|ref|ZP_06609605.1| crossover junction endodeoxyribonuclease RuvC [Actinomyces
           odontolyticus F0309]
 gi|292820158|gb|EFF79155.1| crossover junction endodeoxyribonuclease RuvC [Actinomyces
           odontolyticus F0309]
          Length = 209

 Score = 70.9 bits (172), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 68/131 (51%), Gaps = 1/131 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++GIDPGL R G G+VDV A      V  G   +    +  FRL  + + +  VI+ +
Sbjct: 1   MRVMGIDPGLTRCGLGVVDVDASRRASLVYVGVARTDKDLATHFRLRAIADAIDSVIERY 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            PE  A+E+VF   +  +     Q    A+     A +P++ + P+ +K AV G G+ DK
Sbjct: 61  EPEVVAIERVFAQDNLQSVTTTMQVMGAAMTCVGRAGLPMAVHTPSEVKSAVSGNGNADK 120

Query: 124 KQIHMMLKMLM 134
            Q+  M+  ++
Sbjct: 121 AQVQAMVARIL 131


>gi|237753475|ref|ZP_04583955.1| holliday junction resolvase [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229375742|gb|EEO25833.1| holliday junction resolvase [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 163

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 76/151 (50%), Gaps = 2/151 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + I+GIDPG R  G+ I+ +    +  + +G ++    + L  ++ +  EG+  V+K  +
Sbjct: 1   MNILGIDPGSRNCGYAIIKLENGAISLIEAG-LIKIKERILQDQIVEFVEGIDLVLKQHK 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
            +  A+E +F   +    +KL Q R    L         +EY P  +KKA+ G G   K+
Sbjct: 60  IDSVAIEDMFYAYNPKTVIKLAQFRGALSLKILQELGNFAEYTPLQVKKALTGNGKAAKE 119

Query: 125 QIHMMLKMLMP-ESFFKGKDAADALAIAVCH 154
           Q+  M+K L+  +   K  D  DA+AIA+ H
Sbjct: 120 QVAFMVKRLLGIKGEIKPLDITDAIAIAITH 150


>gi|218296776|ref|ZP_03497482.1| crossover junction endodeoxyribonuclease RuvC [Thermus aquaticus
           Y51MC23]
 gi|218242865|gb|EED09399.1| crossover junction endodeoxyribonuclease RuvC [Thermus aquaticus
           Y51MC23]
          Length = 166

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 84/162 (51%), Gaps = 4/162 (2%)

Query: 7   IIGIDPGLRRTGWGIVDVA--GDNLCFVSSGTIVSCVRQSLA-FRLCQLYEGLTDVIKNW 63
           ++G+DPG+   G G+V+    G     +  G +V    +  A  R+ +++    + +  +
Sbjct: 3   VLGVDPGITHLGLGVVEAEEKGALKARLLHGEVVRTSHKEKAEARVGRIHARAKEALLAF 62

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RPE  AVE+ F  +      K+G A    +++   A +PV  Y P  +K+A+ G GH  K
Sbjct: 63  RPEALAVEEQFFYRQNELAYKVGWALGAVLVAAFEAGVPVYAYGPMQVKQALAGHGHASK 122

Query: 124 KQIHMMLK-MLMPESFFKGKDAADALAIAVCHAYHANSGYYK 164
           +++ +M++  L  +   +    ADALAIA+ HA++A  G  K
Sbjct: 123 EEVALMVRSALGLKETPRPSHLADALAIALTHAFYARLGAAK 164


>gi|302550161|ref|ZP_07302503.1| crossover junction endodeoxyribonuclease RuvC [Streptomyces
           viridochromogenes DSM 40736]
 gi|302467779|gb|EFL30872.1| crossover junction endodeoxyribonuclease RuvC [Streptomyces
           viridochromogenes DSM 40736]
          Length = 176

 Score = 70.5 bits (171), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 56/156 (35%), Positives = 86/156 (55%), Gaps = 2/156 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G G+V+      L  +  G + +     L  RL  + +G+   +   
Sbjct: 1   MRVLGVDPGLTRCGVGVVEGVAGRPLTMIGVGVVRTPADADLGHRLVAVEQGIEQWLDEH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RPE  AVE+VF   +    +   QA A+A+L  A   IPV+ + P+ +K AV G G  DK
Sbjct: 61  RPEFVAVERVFSQHNVRTVMGTAQASAVAMLCAARRGIPVALHTPSEVKAAVTGSGRADK 120

Query: 124 KQI-HMMLKMLMPESFFKGKDAADALAIAVCHAYHA 158
            Q+  M+ ++L   +  K  DAADALA+A+CH + A
Sbjct: 121 AQVGAMVTRLLRLSAPPKPADAADALALAICHIWRA 156


>gi|317508677|ref|ZP_07966332.1| crossover junction endodeoxyribonuclease RuvC [Segniliparus rugosus
           ATCC BAA-974]
 gi|316252998|gb|EFV12413.1| crossover junction endodeoxyribonuclease RuvC [Segniliparus rugosus
           ATCC BAA-974]
          Length = 189

 Score = 70.5 bits (171), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 67/131 (51%), Gaps = 1/131 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++GIDPGL R G  +V+  AG  +  +      +  + SL  RL ++ + +   + + 
Sbjct: 1   MRVMGIDPGLTRCGLALVEAGAGRKVTALDVDVCRTSPQDSLQHRLSRIADEVEHWLDSH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RP+  AVEQVF   +    + + Q   +  L  A   IPV  + P+ +K AV G G  DK
Sbjct: 61  RPDVVAVEQVFAQHNVRTVMGVAQVSGVVALLAARRSIPVRTHTPSEVKAAVTGNGRADK 120

Query: 124 KQIHMMLKMLM 134
            Q+  M+  ++
Sbjct: 121 DQVTAMVTRIL 131


>gi|296117789|ref|ZP_06836372.1| crossover junction endodeoxyribonuclease RuvC [Corynebacterium
           ammoniagenes DSM 20306]
 gi|295969020|gb|EFG82262.1| crossover junction endodeoxyribonuclease RuvC [Corynebacterium
           ammoniagenes DSM 20306]
          Length = 180

 Score = 70.5 bits (171), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 53/153 (34%), Positives = 84/153 (54%), Gaps = 2/153 (1%)

Query: 8   IGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           +GIDPGL R G  +V    G  +  +S G   +   + LA RL +L   + + + +++P+
Sbjct: 1   MGIDPGLTRCGLSVVQAGRGRAVIPISVGVARTPPEEDLAKRLLRLSTAVEEWMDDYKPD 60

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+E++F   +    L       + +L+ A   IPV  Y P+ +KKA+ G G  DKKQ+
Sbjct: 61  VVAIERLFERGNVSTVLHTAHGVGVLMLAAAKRDIPVYMYTPSEVKKAISGNGRADKKQM 120

Query: 127 HMML-KMLMPESFFKGKDAADALAIAVCHAYHA 158
            +M+ ++L      K  DAADALA+AVCH + A
Sbjct: 121 TVMITRILGLTEAPKPADAADALALAVCHCWRA 153


>gi|284032306|ref|YP_003382237.1| crossover junction endodeoxyribonuclease RuvC [Kribbella flavida
           DSM 17836]
 gi|283811599|gb|ADB33438.1| crossover junction endodeoxyribonuclease RuvC [Kribbella flavida
           DSM 17836]
          Length = 208

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 90/169 (53%), Gaps = 5/169 (2%)

Query: 5   IRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G GIV+ A G     V+ G I +     +A RL  +  G+   I   
Sbjct: 1   MRVLGVDPGLTRCGLGIVEGAPGRPPKLVAVGVIRTPTDLDVAQRLVLIEAGIEQWIAEH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P+  AVE+VF   +    +   QA  +A++  A   +PV+ + P+ +K AV G G   K
Sbjct: 61  APDAVAVERVFAQHNVRTVMGTAQASGVAMVVAARRGLPVALHTPSEVKAAVTGSGRAGK 120

Query: 124 KQIHMMLKML--MPESFFKGKDAADALAIAVCHAYH-ANSGYYKIASQD 169
           +Q+  M+  +  +PE      DAADALA+A+CH +  A +   + A+Q 
Sbjct: 121 EQVTSMVTRILQLPERPTP-ADAADALALAICHVWRGAGTSRRQEAAQS 168


>gi|94984435|ref|YP_603799.1| crossover junction endodeoxyribonuclease RuvC [Deinococcus
           geothermalis DSM 11300]
 gi|122986717|sp|Q1J1K4|RUVC_DEIGD RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|94554716|gb|ABF44630.1| Crossover junction endodeoxyribonuclease RuvC [Deinococcus
           geothermalis DSM 11300]
          Length = 168

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 70/133 (52%), Gaps = 16/133 (12%)

Query: 7   IIGIDPGLRRTGWGIVDVAGD--------NLCFVSSGTIVSCVRQSLAFRLCQLYEGLTD 58
           ++G+DPGL   G G+V+  GD        ++C  +    +      +  RL  L+E +  
Sbjct: 3   VLGVDPGLANLGLGLVE--GDVRKARHLYHVCLTTESAWL------MPRRLQYLHEEVAR 54

Query: 59  VIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGV 118
           ++  +RP+  A+E   + + A    K+GQA  +  L+ A A +P+  Y P  +K++++G 
Sbjct: 55  LLAEYRPDAVAIEDQILRRQADVAFKVGQAFGVVQLACAQAGVPIHAYGPMQVKRSLVGT 114

Query: 119 GHGDKKQIHMMLK 131
           G  DK+QI  M+K
Sbjct: 115 GRADKEQIIYMVK 127


>gi|255327195|ref|ZP_05368270.1| crossover junction endodeoxyribonuclease RuvC [Rothia mucilaginosa
           ATCC 25296]
 gi|255295813|gb|EET75155.1| crossover junction endodeoxyribonuclease RuvC [Rothia mucilaginosa
           ATCC 25296]
          Length = 229

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/153 (32%), Positives = 84/153 (54%), Gaps = 2/153 (1%)

Query: 4   SIRIIGIDPGLRRTGWGIVDVAGDNLC-FVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
           + RI+G+DPGL R G+ ++D+  D    FV+ G   +   +SL  R+  ++   +  +  
Sbjct: 27  ATRIMGVDPGLTRCGFSMLDMTADRKAHFVNVGVAGTIPAESLDQRILWIFNAASHWLDT 86

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
           ++P+  A+E++F  +     +    A    I + A+  +PV  + P+ +K AV G G  D
Sbjct: 87  YKPDALAIERIFAQEQVNTVIGTAHASGAVISAAAMRGVPVFFHTPSEVKAAVTGSGRAD 146

Query: 123 KKQI-HMMLKMLMPESFFKGKDAADALAIAVCH 154
           K  +  M+ ++L  +S  K  DAADALAIA+CH
Sbjct: 147 KASVGRMVTRILGLDSMPKPADAADALAIAICH 179


>gi|254383614|ref|ZP_04998964.1| crossover junction endodeoxyribonuclease ruvC [Streptomyces sp.
           Mg1]
 gi|194342509|gb|EDX23475.1| crossover junction endodeoxyribonuclease ruvC [Streptomyces sp.
           Mg1]
          Length = 176

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/131 (33%), Positives = 69/131 (52%), Gaps = 1/131 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G G+V+      L  +  G + +     L  RL  +  G+ + +   
Sbjct: 1   MRVLGVDPGLTRCGVGVVEGVAGRPLTMIGVGVVRTPADTELGNRLVAIERGIEEWLDEH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RPE  AVE+VF   +    +   QA A+A+L  A   IPV+ + P+ +K AV G G  DK
Sbjct: 61  RPEVVAVERVFSQHNVSTVMGTAQASAVAMLCAARRGIPVALHTPSEVKAAVTGSGRADK 120

Query: 124 KQIHMMLKMLM 134
            Q+  M+  L+
Sbjct: 121 AQVGAMVTRLL 131


>gi|86606552|ref|YP_475315.1| Holliday junction resolvase [Synechococcus sp. JA-3-3Ab]
 gi|86555094|gb|ABD00052.1| crossover junction endodeoxyribonuclease RuvC [Synechococcus sp.
           JA-3-3Ab]
          Length = 193

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 66/122 (54%), Gaps = 1/122 (0%)

Query: 6   RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           RI+G+DPGL   G+G +      L  +  G I +   QS+  RL  LYE L ++++ ++P
Sbjct: 39  RILGLDPGLGTVGFGCILAGAGGLRSLDYGVISTPGEQSIPERLQTLYEDLKELLRQFQP 98

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
            +  +E++F  K    T+ + QAR + +L  A   +   E+ P  +K+++ G G  DK+ 
Sbjct: 99  HQVGLEKLFFYKMG-NTIPIAQARGVILLVLAQYHLVPVEFTPAQVKQSLTGYGRADKQA 157

Query: 126 IH 127
           + 
Sbjct: 158 VQ 159


>gi|329938966|ref|ZP_08288340.1| Holliday junction resolvase [Streptomyces griseoaurantiacus M045]
 gi|329301851|gb|EGG45744.1| Holliday junction resolvase [Streptomyces griseoaurantiacus M045]
          Length = 186

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/131 (33%), Positives = 70/131 (53%), Gaps = 1/131 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G G+V+      L  +  G + +     L  RL  + +G+ + +   
Sbjct: 1   MRVLGVDPGLTRCGVGVVEGVPGRPLTMLGVGVVRTPADAELGHRLVAVEQGIEEWLDAH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RPE  AVE+VF   +    +   QA A+A+L  A   IPV+ + P+ +K AV G G  DK
Sbjct: 61  RPEYVAVERVFSQHNVRTVMGTAQASAVAMLCAARRGIPVALHTPSEVKAAVTGSGRADK 120

Query: 124 KQIHMMLKMLM 134
            Q+  M+  L+
Sbjct: 121 AQVGAMVTRLL 131


>gi|302527852|ref|ZP_07280194.1| crossover junction endodeoxyribonuclease RuvC [Streptomyces sp.
           AA4]
 gi|302436747|gb|EFL08563.1| crossover junction endodeoxyribonuclease RuvC [Streptomyces sp.
           AA4]
          Length = 200

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/131 (33%), Positives = 71/131 (54%), Gaps = 1/131 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G G+VD   G ++  V+ G + +   Q LA RL  + + +   +  +
Sbjct: 1   MRVLGVDPGLTRCGLGVVDGGKGRSVRPVAVGVVRTPADQDLAQRLLGVADEVERWLDRY 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RPE  AVE+VF   +    +   QA  +  L+ A   +PV  + P+ +K AV G G  DK
Sbjct: 61  RPEAVAVERVFAQHNVRTAMGTAQAGGVVALAAARRGLPVVFHTPSEVKAAVTGSGRADK 120

Query: 124 KQIHMMLKMLM 134
            Q+  M+  L+
Sbjct: 121 AQVTTMVMRLL 131


>gi|297195495|ref|ZP_06912893.1| crossover junction endodeoxyribonuclease ruvC [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197722110|gb|EDY66018.1| crossover junction endodeoxyribonuclease ruvC [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 180

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/158 (35%), Positives = 88/158 (55%), Gaps = 2/158 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G G+V+      L     G + +     L  RL  + +G+   +  +
Sbjct: 1   MRVLGVDPGLTRCGVGVVEGVAGRPLTMRGVGVVRTPPDAELGARLVAVEQGIERWLDEY 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RPE  AVE+VF   +    +   QA A+A+L  A   IPV+ + P+ +K AV G G  DK
Sbjct: 61  RPEFVAVERVFSQHNVRTVMGTAQASAVAMLCAARRGIPVALHTPSEVKAAVTGSGRADK 120

Query: 124 KQI-HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
            Q+  M+ ++L  ++  K  DAADALA+A+CH + A +
Sbjct: 121 AQVGAMVTRLLRLDAPPKPADAADALALAICHIWRAPA 158


>gi|294628364|ref|ZP_06706924.1| crossover junction endodeoxyribonuclease RuvC [Streptomyces sp.
           e14]
 gi|292831697|gb|EFF90046.1| crossover junction endodeoxyribonuclease RuvC [Streptomyces sp.
           e14]
          Length = 182

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/156 (35%), Positives = 86/156 (55%), Gaps = 2/156 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G G+V+      L  +  G + +     L  RL  + +G+   +   
Sbjct: 1   MRVLGVDPGLTRCGVGVVEGVAGRPLTMIGVGVVRTPADADLGHRLVAVEQGIEQWLDEH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RPE  AVE+VF   +    +   QA A+AIL  +   +PV+ + P+ +K AV G G  DK
Sbjct: 61  RPEFVAVERVFSQHNVRTVMGTAQASAVAILCASRRGLPVALHTPSEVKAAVTGSGRADK 120

Query: 124 KQI-HMMLKMLMPESFFKGKDAADALAIAVCHAYHA 158
            Q+  M+ ++L   +  K  DAADALA+A+CH + A
Sbjct: 121 AQVGAMVTRLLRLSAPPKPADAADALALAICHIWRA 156


>gi|261414852|ref|YP_003248535.1| crossover junction endodeoxyribonuclease RuvC [Fibrobacter
           succinogenes subsp. succinogenes S85]
 gi|261371308|gb|ACX74053.1| crossover junction endodeoxyribonuclease RuvC [Fibrobacter
           succinogenes subsp. succinogenes S85]
 gi|302326365|gb|ADL25566.1| crossover junction endodeoxyribonuclease RuvC [Fibrobacter
           succinogenes subsp. succinogenes S85]
          Length = 189

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 74/150 (49%), Gaps = 1/150 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG   TG+  +   G+ +  +  GT  +   ++L  RL  +   L   + ++ P+
Sbjct: 3   ILGIDPGSITTGYAFLKKTGNQIQVLEYGTFHANATKNLEDRLVHIVTELEKRLDHYHPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+E VF  K+  + L LG  R   +++     +   EY P  +K+AV G G   K+ +
Sbjct: 63  ALAMEGVFFAKNVKSALVLGHIRGAILVACHRRGMTYEEYPPKVVKQAVTGNGAASKEHV 122

Query: 127 -HMMLKMLMPESFFKGKDAADALAIAVCHA 155
            +M+   L         DA+DALAIA  HA
Sbjct: 123 ANMIFAHLGIVGGDLPLDASDALAIAWTHA 152


>gi|227549153|ref|ZP_03979202.1| Holliday junction resolvase [Corynebacterium lipophiloflavum DSM
           44291]
 gi|227078773|gb|EEI16736.1| Holliday junction resolvase [Corynebacterium lipophiloflavum DSM
           44291]
          Length = 165

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/153 (34%), Positives = 83/153 (54%), Gaps = 2/153 (1%)

Query: 8   IGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           +GIDPGL R G  IV    G  +  ++ G + +     L  RL +L   + + + +++P+
Sbjct: 1   MGIDPGLTRCGLSIVQAGRGRQVIPIAVGVVRTPAASELPQRLVRLSAAVREWLDDYQPD 60

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+E++F   +    +    A  + IL+ A   +PV  Y P+ +KKA+ G G  DKKQ+
Sbjct: 61  VIAMERIFERGNVSTVMHTAHAVGVLILAAAERGLPVHMYTPSEVKKAISGNGRADKKQM 120

Query: 127 HMML-KMLMPESFFKGKDAADALAIAVCHAYHA 158
             M+ ++L      K  DAADALAIAVCH + A
Sbjct: 121 TTMITRILGLAEPPKPADAADALAIAVCHCWRA 153


>gi|290961820|ref|YP_003493002.1| crossover junction endodeoxyribonuclease [Streptomyces scabiei
           87.22]
 gi|260651346|emb|CBG74468.1| crossover junction endodeoxyribonuclease [Streptomyces scabiei
           87.22]
          Length = 176

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/158 (35%), Positives = 88/158 (55%), Gaps = 2/158 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G G+V+      L  +  G + +     L  RL  + +G+   +   
Sbjct: 1   MRVLGVDPGLTRCGVGVVEGVAGRPLTMLGVGVVRTPPDAELGRRLVAIEQGIEQWLDEH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RPE  AVE+VF   +    +   QA A+A+L  A   IPV+ + P+ +K AV G G  DK
Sbjct: 61  RPECVAVERVFSQHNVRTVMGTAQASAVAMLCAARRGIPVALHTPSEVKAAVTGSGRADK 120

Query: 124 KQI-HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
            Q+  M+ ++L  ++  K  DAADALA+A+CH + A +
Sbjct: 121 AQVGAMVTRLLRLDAPPKPADAADALALAICHIWRAPA 158


>gi|297198359|ref|ZP_06915756.1| crossover junction endodeoxyribonuclease RuvC [Streptomyces sviceus
           ATCC 29083]
 gi|197714416|gb|EDY58450.1| crossover junction endodeoxyribonuclease RuvC [Streptomyces sviceus
           ATCC 29083]
          Length = 179

 Score = 69.3 bits (168), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/156 (35%), Positives = 87/156 (55%), Gaps = 2/156 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G G+V+      L  +  G + +     L  RL  + +G+   +   
Sbjct: 1   MRVLGVDPGLTRCGVGVVEGVAGRPLTMLGVGVVRTPSDAELGQRLVAVEQGIEQWLDQH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RPE  AVE+VF   +    +   QA A+A+L  A   IPV+ + P+ +K AV G G  DK
Sbjct: 61  RPEFVAVERVFSQHNVRTVMGTAQASAVAMLCAARRGIPVALHTPSEVKAAVTGSGRADK 120

Query: 124 KQI-HMMLKMLMPESFFKGKDAADALAIAVCHAYHA 158
            Q+  M+ ++L  ++  K  DAADALA+A+CH + A
Sbjct: 121 AQVGAMVTRLLRLDAPPKPADAADALALAICHIWRA 156


>gi|300864594|ref|ZP_07109453.1| Crossover junction endodeoxyribonuclease ruvC [Oscillatoria sp. PCC
           6506]
 gi|300337418|emb|CBN54601.1| Crossover junction endodeoxyribonuclease ruvC [Oscillatoria sp. PCC
           6506]
          Length = 174

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 69/130 (53%), Gaps = 9/130 (6%)

Query: 6   RIIGIDPGLRRTGWGIVD---VAGDN-----LCFVSSGTIVSCVRQSLAFRLCQLYEGLT 57
           RI+G+DPGL   G+G++D   +AG       +  +  G I +   Q +  RL  +Y+ L 
Sbjct: 4   RILGLDPGLAILGFGVIDCEIIAGKKDEDYRVSMIDFGVIKTPAGQEMGQRLRTIYDDLN 63

Query: 58  DVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIG 117
            +I  ++P+ A  E++F  K   A + + QAR + +L  A   +P+ E+ P  IK A+ G
Sbjct: 64  AIIDQFKPDLAVAEKLFFYKMGSAIV-VAQARGVLMLVLAQQNVPLVEFTPAQIKLALTG 122

Query: 118 VGHGDKKQIH 127
            G+ DK  + 
Sbjct: 123 RGNADKYDVQ 132


>gi|333028330|ref|ZP_08456394.1| putative holliday junction resolvase [Streptomyces sp. Tu6071]
 gi|332748182|gb|EGJ78623.1| putative holliday junction resolvase [Streptomyces sp. Tu6071]
          Length = 198

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 71/132 (53%), Gaps = 1/132 (0%)

Query: 4   SIRIIGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
           ++R++G+DPGL R G G+VD      L  V  G + +     L+ RL  +  G+ + +  
Sbjct: 14  AVRVLGVDPGLTRCGVGVVDGVPGRPLTMVGVGVVRTPADAELSRRLLAVEAGIEEWLDT 73

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
            RPE  A+E+VF   +    +   QA A+A+L  A   +PV+ + P+ +K AV G G  D
Sbjct: 74  HRPEYVAIERVFSQHNVRTVMGTAQASAVAMLCAARRGLPVALHTPSEVKAAVTGSGRAD 133

Query: 123 KKQIHMMLKMLM 134
           K Q+  M+  L+
Sbjct: 134 KAQVGAMVTRLL 145


>gi|222099064|ref|YP_002533632.1| Crossover junction endodeoxyribonuclease ruvC [Thermotoga
           neapolitana DSM 4359]
 gi|221571454|gb|ACM22266.1| Crossover junction endodeoxyribonuclease ruvC [Thermotoga
           neapolitana DSM 4359]
          Length = 170

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 74/130 (56%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+G+DPG    G GI++++G+ +  V  G I +        RL Q++E    +++ + 
Sbjct: 6   LRILGVDPGYGIVGIGIIEISGNRISHVFHGAIETSKDLPRGKRLKQIHEEFLRILEKFS 65

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+E A+E +F  K+    + +G+AR + +L+     +PV EYAPN +K ++ G G   K+
Sbjct: 66  PDECAMETLFFVKNVTTAIGVGEARGVILLALEEKGVPVFEYAPNEVKISLTGYGRASKR 125

Query: 125 QIHMMLKMLM 134
           Q+   +K  +
Sbjct: 126 QVQENVKRFL 135


>gi|294055497|ref|YP_003549155.1| crossover junction endodeoxyribonuclease RuvC [Coraliomargarita
           akajimensis DSM 45221]
 gi|293614830|gb|ADE54985.1| crossover junction endodeoxyribonuclease RuvC [Coraliomargarita
           akajimensis DSM 45221]
          Length = 165

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/151 (33%), Positives = 79/151 (52%), Gaps = 1/151 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQ-SLAFRLCQLYEGLTDVIKNWRP 65
           ++GIDP LR +G+ +V+  G+    +   T +   R  S+   L  +   + D I   + 
Sbjct: 9   VLGIDPSLRGSGFAVVEYRGNQQVRLLEATTLHLKRDLSMPECLGAIGNQVEDFIDQHQI 68

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
           E  AVEQ    ++      LG AR  AI + A+  +PV EYAP  +K+AV+G+G   K+Q
Sbjct: 69  EHVAVEQTIYVQNFQTAQVLGAARGAAIAAAAMRGLPVFEYAPLRVKQAVVGMGRASKEQ 128

Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
           +   +  L      K  D +DA A+A+CHA+
Sbjct: 129 VARTVHTLTGVDVGKRYDESDAAAVALCHAF 159


>gi|288923987|ref|ZP_06418057.1| crossover junction endodeoxyribonuclease RuvC [Frankia sp. EUN1f]
 gi|288344665|gb|EFC79124.1| crossover junction endodeoxyribonuclease RuvC [Frankia sp. EUN1f]
          Length = 179

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/131 (34%), Positives = 71/131 (54%), Gaps = 1/131 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G G+VD   G     V  G + +     +A RL  + EG+ + +   
Sbjct: 1   MRVLGVDPGLTRCGIGVVDGGPGRRASLVDVGVVRTPASDEVAQRLRAVSEGVEEWLDRL 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RP+  AVE+VF   +    +   QA A+AI++ A   +P+  Y P+ +K AV G G  DK
Sbjct: 61  RPDAVAVEKVFSQANVRTVMGTAQAGAVAIVAAARRGLPIGLYTPSEVKAAVTGSGRADK 120

Query: 124 KQIHMMLKMLM 134
            Q+  M+  L+
Sbjct: 121 AQVGFMVTRLL 131


>gi|218508891|ref|ZP_03506769.1| Holliday junction resolvase [Rhizobium etli Brasil 5]
          Length = 64

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/55 (74%), Positives = 48/55 (87%)

Query: 106 YAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           YAPN +KKAVIGVGHG+K QIHMMLK+LMP+  FKG DAADALAIA+CHA++  S
Sbjct: 1   YAPNAVKKAVIGVGHGEKHQIHMMLKILMPKVEFKGDDAADALAIAICHAHNRGS 55


>gi|318057103|ref|ZP_07975826.1| Holliday junction resolvase [Streptomyces sp. SA3_actG]
 gi|318075776|ref|ZP_07983108.1| Holliday junction resolvase [Streptomyces sp. SA3_actF]
          Length = 184

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/158 (35%), Positives = 87/158 (55%), Gaps = 2/158 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G G+VD      L  V  G + +     L+ RL  +  G+ + +   
Sbjct: 1   MRVLGVDPGLTRCGVGVVDGVPGRPLTMVGVGVVRTPADAELSRRLLAVEAGIEEWLDTH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RPE  A+E+VF   +    +   QA A+A+L  A   +PV+ + P+ +K AV G G  DK
Sbjct: 61  RPEYVAIERVFSQHNVRTVMGTAQASAVAMLCAARRGLPVALHTPSEVKAAVTGSGRADK 120

Query: 124 KQI-HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
            Q+  M+ ++L      K  DAADALA+A+CH + A +
Sbjct: 121 AQVGAMVTRLLRLAEPPKPADAADALALAICHIWRAPT 158


>gi|17229789|ref|NP_486337.1| Holliday junction resolvase [Nostoc sp. PCC 7120]
 gi|3914945|sp|O52751|RUVC_ANASP RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|2896027|gb|AAC03106.1| holiday junction resolvase [Nostoc sp. PCC 7120]
 gi|17131389|dbj|BAB73996.1| holliday junction resolvase [Nostoc sp. PCC 7120]
          Length = 163

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 68/129 (52%), Gaps = 8/129 (6%)

Query: 6   RIIGIDPGLRRTGWG-------IVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTD 58
           RI+G+DPGL   G+G       +  +    +  +  G I +     +  RLC L++ L  
Sbjct: 4   RILGLDPGLAILGFGAITCTPGLTQLQSTKVNVLDFGVIKTSADIEIGQRLCTLFDDLHT 63

Query: 59  VIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGV 118
           VI   +P+  A+E++F  + + +T+ + QAR + +L+ A   +P  E+ P  IK A+ G 
Sbjct: 64  VIDQLQPDVVAIEKLFFYRMS-STIVVAQARGVVMLALAQHHLPYVEFTPAQIKLALTGY 122

Query: 119 GHGDKKQIH 127
           G+ DK ++ 
Sbjct: 123 GNADKSEVQ 131


>gi|302206307|gb|ADL10649.1| Crossover junction endodeoxyribonuclease ruvC [Corynebacterium
           pseudotuberculosis C231]
 gi|308276549|gb|ADO26448.1| Crossover junction endodeoxyribonuclease ruvC [Corynebacterium
           pseudotuberculosis I19]
          Length = 193

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 83/158 (52%), Gaps = 2/158 (1%)

Query: 3   KSIRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           + +R++GIDPGL R G  +V    G  +  ++ G + +     L  RL +L +   + + 
Sbjct: 4   EGLRVMGIDPGLTRCGLSVVQAGRGRQVMPIAVGVVRTPPHADLTVRLLELSDAANEWMD 63

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
            ++P+  A+E++F   +    +       + +L+ A   I V  Y P+  KKA+ G G  
Sbjct: 64  EYQPDVVAIERIFERGNVSTVMHTAHGVGVLVLAAAQRGIDVHMYTPSEAKKAISGNGRA 123

Query: 122 DKKQIHMML-KMLMPESFFKGKDAADALAIAVCHAYHA 158
           DKKQ+  M+ ++L      K  DAADALA+AVCH + A
Sbjct: 124 DKKQMTAMITRILGLSEPPKPADAADALALAVCHCWRA 161


>gi|254496521|ref|ZP_05109392.1| truncated crossover junction endodeoxyribonuclease ruvC [Legionella
           drancourtii LLAP12]
 gi|254354260|gb|EET12924.1| truncated crossover junction endodeoxyribonuclease ruvC [Legionella
           drancourtii LLAP12]
          Length = 118

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/97 (42%), Positives = 67/97 (69%)

Query: 60  IKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVG 119
           + ++ PEE A+EQVF++++  + LKLG AR +A+++ A  R+ VSEY+   IK+ V+G G
Sbjct: 1   MDHYSPEEVAIEQVFMHQNPNSALKLGHARGVAMVAAASHRVNVSEYSARAIKQTVVGYG 60

Query: 120 HGDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
             +K Q++ M+  L+  +     DAADALAIA+CH++
Sbjct: 61  AAEKTQVNHMVVSLLSLNSAPQSDAADALAIAICHSH 97


>gi|158316902|ref|YP_001509410.1| Holliday junction resolvase [Frankia sp. EAN1pec]
 gi|238686854|sp|A8KZE8|RUVC_FRASN RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|158112307|gb|ABW14504.1| crossover junction endodeoxyribonuclease RuvC [Frankia sp. EAN1pec]
          Length = 178

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/131 (34%), Positives = 71/131 (54%), Gaps = 1/131 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G G+VD   G     V  G + +     +A RL  + EG+ + +   
Sbjct: 1   MRVLGVDPGLTRCGLGVVDGGPGRRASLVEVGVVRTPASDEVADRLRAVSEGVDEWLDRV 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RP+  AVE+VF   +    +   QA A+AI++ A   +P+  Y P+ +K AV G G  DK
Sbjct: 61  RPDAVAVEKVFSQANVRTVMGTAQAGAVAIVAAARRGLPIGLYTPSEVKAAVTGSGRADK 120

Query: 124 KQIHMMLKMLM 134
            Q+  M+  L+
Sbjct: 121 AQVGFMVTKLL 131


>gi|45658715|ref|YP_002801.1| putative holliday junction endodeoxyribonuclease protein
           [Leptospira interrogans serovar Copenhageni str. Fiocruz
           L1-130]
 gi|45601959|gb|AAS71438.1| putative holliday junction endodeoxyribonuclease protein
           [Leptospira interrogans serovar Copenhageni str. Fiocruz
           L1-130]
          Length = 190

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 79/148 (53%), Gaps = 1/148 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RIIGIDPG  R G+ +++     +  ++ GT+           L  L +GL ++++ + 
Sbjct: 27  LRIIGIDPGSHRAGYAVLEKNASKIKILNYGTVEVPSGTPSPDNLLMLRKGLREILEEFN 86

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P  A+VE++F  K+     ++ ++R + +++ A   I + E   + IKK   G G  DKK
Sbjct: 87  PSIASVEEMFFAKNKKTASRVFESRGVLLVTLAELNIRILEPTVSQIKKGTTGSGTADKK 146

Query: 125 QIHMMLKMLMPESFFKGKDAA-DALAIA 151
           QI   LK+L+     KG D + DA+A A
Sbjct: 147 QIRHALKLLLNVELLKGHDDSWDAIAAA 174


>gi|328881168|emb|CCA54407.1| Crossover junction endodeoxyribonuclease RuvC [Streptomyces
           venezuelae ATCC 10712]
          Length = 187

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 53/156 (33%), Positives = 86/156 (55%), Gaps = 2/156 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G G+V+      L  +  G + +     +  RL  +  G+ + +  +
Sbjct: 1   MRVLGVDPGLTRCGVGVVEGVAGRPLSMLGVGVVRTAADDDIGLRLVGIERGIEEWLDRF 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            PE  AVE+VF   +    +   QA A+A+L  +   IPV+ + P+ +K AV G G  DK
Sbjct: 61  SPELVAVERVFAQHNVRTVMGTAQASAVAMLCASRRGIPVALHTPSEVKAAVTGSGRADK 120

Query: 124 KQI-HMMLKMLMPESFFKGKDAADALAIAVCHAYHA 158
            Q+  M+ ++L   +  K  DAADALA+A+CH + A
Sbjct: 121 AQVGAMVTRLLRLSAPPKPADAADALALAICHIWRA 156


>gi|119716612|ref|YP_923577.1| Holliday junction endonuclease RuvC [Nocardioides sp. JS614]
 gi|166233275|sp|A1SJA5|RUVC_NOCSJ RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|119537273|gb|ABL81890.1| Holliday junction endonuclease RuvC [Nocardioides sp. JS614]
          Length = 177

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 66/131 (50%), Gaps = 1/131 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++GIDPGL R G G+VD + G  L  V    + +     +  RL  +  G+   I+  
Sbjct: 1   MRVLGIDPGLTRCGMGVVDGSVGRPLTLVDVNVLRTSADLPVPERLVTIERGVEAWIEEH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P+  A+E+VF   D    +   QA  +A++  A   +P+  + P+ +K AV G G   K
Sbjct: 61  APDAVAIERVFARSDVSTVMGTAQASGVAMVVAARRGLPIGLHTPSEVKAAVSGNGRAGK 120

Query: 124 KQIHMMLKMLM 134
            Q+  M+  ++
Sbjct: 121 AQVGAMVTRIL 131


>gi|182414268|ref|YP_001819334.1| crossover junction endodeoxyribonuclease [Opitutus terrae PB90-1]
 gi|177841482|gb|ACB75734.1| Crossover junction endodeoxyribonuclease [Opitutus terrae PB90-1]
          Length = 200

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 50/153 (32%), Positives = 77/153 (50%), Gaps = 3/153 (1%)

Query: 6   RIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           R++GIDP LR TG  +++ A G     +   T+    R  +A  L +++  +   +    
Sbjct: 45  RVLGIDPSLRGTGLALIEFAPGRAPVLLRCQTVRVSARLPMAQALAEIHRAVLAFLDGTE 104

Query: 65  PEEAAVEQ-VFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
               A+EQ +FV     A + LG AR  A+   AL   PV EYAP  +K+AV+G G   K
Sbjct: 105 VRHVALEQTIFVQNFQTAQI-LGAARGAAMAVAALQGRPVFEYAPLRVKQAVVGAGRASK 163

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
           +Q+   +  L+        D ADA  +A+CHA+
Sbjct: 164 EQMARTVMALLGHGRPLASDEADAAGVALCHAF 196


>gi|300858595|ref|YP_003783578.1| crossover junction endodeoxyribonuclease [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300686049|gb|ADK28971.1| crossover junction endodeoxyribonuclease [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302330864|gb|ADL21058.1| Crossover junction endodeoxyribonuclease ruvC [Corynebacterium
           pseudotuberculosis 1002]
          Length = 193

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 83/158 (52%), Gaps = 2/158 (1%)

Query: 3   KSIRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           + +R++GIDPGL R G  +V    G  +  ++ G + +     L  RL +L +   + + 
Sbjct: 4   EGLRVMGIDPGLTRCGLSVVQAGRGRQVMPIAVGVVRTPPHADLTVRLLELSDTANEWMD 63

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
            ++P+  A+E++F   +    +       + +L+ A   I V  Y P+  KKA+ G G  
Sbjct: 64  EYQPDVVAIERIFERGNVSTVMHTAHGVGVLVLAAAQRGIDVHMYTPSEAKKAISGNGRA 123

Query: 122 DKKQIHMML-KMLMPESFFKGKDAADALAIAVCHAYHA 158
           DKKQ+  M+ ++L      K  DAADALA+AVCH + A
Sbjct: 124 DKKQMTAMITRILGLSEPPKPADAADALALAVCHCWRA 161


>gi|302533405|ref|ZP_07285747.1| crossover junction endodeoxyribonuclease RuvC [Streptomyces sp. C]
 gi|302442300|gb|EFL14116.1| crossover junction endodeoxyribonuclease RuvC [Streptomyces sp. C]
          Length = 179

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 56/158 (35%), Positives = 86/158 (54%), Gaps = 2/158 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G G+V+      L  +  G + +     L  RL  +  G+ + +   
Sbjct: 1   MRVLGVDPGLTRCGVGVVEGVAGRPLTMIGVGVVRTPADAELGQRLVAIEAGIEEWLDAH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RPE  AVE+VF   +    +   QA A+A+L  A   IPV+ + P+ +K AV G G  DK
Sbjct: 61  RPEFVAVERVFSQHNVRTVMGTAQASAVAMLCAARRGIPVALHTPSEVKAAVTGSGRADK 120

Query: 124 KQI-HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
            Q+  M+ ++L      K  DAADALA+A+CH + A +
Sbjct: 121 AQVGAMVTRLLRLAEPPKPADAADALALAICHIWRAPA 158


>gi|213966142|ref|ZP_03394329.1| crossover junction endodeoxyribonuclease RuvC [Corynebacterium
           amycolatum SK46]
 gi|213951240|gb|EEB62635.1| crossover junction endodeoxyribonuclease RuvC [Corynebacterium
           amycolatum SK46]
          Length = 186

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 53/153 (34%), Positives = 84/153 (54%), Gaps = 2/153 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           ++GIDPGL R G  I + A G  +  ++ G   +    SL  RL +L   +   +  + P
Sbjct: 1   MMGIDPGLTRCGLSIAEGAQGRKVIPIAVGVARTPTTASLEDRLLRLSNAVEQWMDEYEP 60

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
           +  A+E+VF   +    ++   A  + +L+ A   + V  Y P+ +KKA+ G G  DKKQ
Sbjct: 61  DVVAMERVFERGNVSTVMQTAHAVGVLVLAAARRGLEVHMYTPSEVKKALTGNGRADKKQ 120

Query: 126 IHMML-KMLMPESFFKGKDAADALAIAVCHAYH 157
           + MM+ ++L  E+  K  DAADALAIA+CH + 
Sbjct: 121 MTMMVTRILGLETPPKPADAADALAIAICHCWR 153


>gi|283457991|ref|YP_003362598.1| holliday junction resolvasome, endonuclease subunit [Rothia
           mucilaginosa DY-18]
 gi|283134013|dbj|BAI64778.1| holliday junction resolvasome, endonuclease subunit [Rothia
           mucilaginosa DY-18]
          Length = 228

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 68/132 (51%), Gaps = 1/132 (0%)

Query: 4   SIRIIGIDPGLRRTGWGIVDVAGDNLC-FVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
           + RI+G+DPGL R G+ ++D+  D    FV+ G   +   ++L  R+  ++   +  +  
Sbjct: 26  ATRIMGVDPGLTRCGFSMLDMTADRKAHFVNVGVAGTDPARTLDQRILWIFNAASHWLDT 85

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
           +RP+  A+E++F  +     +    A    I + A+  +PV  + P+ +K AV G G  D
Sbjct: 86  YRPDALAIERIFAQEQVNTVIGTAHASGAVISAAAMRGVPVFFHTPSEVKAAVTGSGRAD 145

Query: 123 KKQIHMMLKMLM 134
           K  +  M+  ++
Sbjct: 146 KASVGRMVTRIL 157


>gi|307326760|ref|ZP_07605952.1| crossover junction endodeoxyribonuclease RuvC [Streptomyces
           violaceusniger Tu 4113]
 gi|306887523|gb|EFN18517.1| crossover junction endodeoxyribonuclease RuvC [Streptomyces
           violaceusniger Tu 4113]
          Length = 201

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 54/156 (34%), Positives = 88/156 (56%), Gaps = 2/156 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G G+V+      L  +  G + +    ++  RL  +  G+ + +   
Sbjct: 1   MRVLGVDPGLTRCGVGVVEGVAGRPLRMLGVGVVRTGADLAIGDRLVLIERGIEEWLDAH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RPE  AVE+VF   +    +   QA A+A+L  A   +PV+ + P+ +K AV G G  DK
Sbjct: 61  RPESVAVERVFSQHNVRTVMGTAQASAVAMLCAARRGLPVALHTPSEVKAAVTGSGRADK 120

Query: 124 KQI-HMMLKMLMPESFFKGKDAADALAIAVCHAYHA 158
            Q+  M+ ++L  ++  K  DAADALA+A+CH + A
Sbjct: 121 AQVGSMVTRLLRLDAPPKPADAADALALAICHIWRA 156


>gi|158522218|ref|YP_001530088.1| crossover junction endodeoxyribonuclease [Desulfococcus oleovorans
           Hxd3]
 gi|158511044|gb|ABW68011.1| Crossover junction endodeoxyribonuclease [Desulfococcus oleovorans
           Hxd3]
          Length = 161

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 79/150 (52%), Gaps = 2/150 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +++IGIDPGL  TG GIV      +   S G I +    SL  RL +++  + D++++ +
Sbjct: 2   VKVIGIDPGLADTGVGIVKGCDGRVSGYSFGCIQTSKNDSLQCRLHRIFSNVQDLLRDEK 61

Query: 65  PEEAAVEQV-FVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           P+   VE V F+ K  V+ + LG+   + +L+     +   +     IK+ V G G+  K
Sbjct: 62  PDVMVVEDVFFLKKYPVSGIVLGEVTGVILLAGFQENVKAVKVPVREIKQVVTGNGNAGK 121

Query: 124 KQI-HMMLKMLMPESFFKGKDAADALAIAV 152
           KQ+   + + L  +   +   A+DALA+A+
Sbjct: 122 KQLGEAVSRFLGHDGPIRPDHASDALALAI 151


>gi|229820483|ref|YP_002882009.1| crossover junction endodeoxyribonuclease RuvC [Beutenbergia
           cavernae DSM 12333]
 gi|229566396|gb|ACQ80247.1| crossover junction endodeoxyribonuclease RuvC [Beutenbergia
           cavernae DSM 12333]
          Length = 199

 Score = 67.4 bits (163), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 83/156 (53%), Gaps = 2/156 (1%)

Query: 7   IIGIDPGLRRTGWGIVD-VAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           I+GIDPGL R G G+++ + G  +  V  G   +     L  RL  + + + + +   +P
Sbjct: 2   ILGIDPGLTRCGIGVIESLPGRRVRLVDVGVATTPAGDPLEARLVSVADRIDEWLDAHQP 61

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
           +  AVE+VF   +        Q   +A+++ A   IPV+ + P+ +K A+ G G  +K Q
Sbjct: 62  DAVAVERVFAQANVRTITGTAQVAGLAMVAAARRGIPVATHTPSEVKAAITGSGRAEKPQ 121

Query: 126 IH-MMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           +  M+ ++L      +  DAADALA+A+CHA+   +
Sbjct: 122 VQEMVARLLALAERPRPADAADALALAICHAWRGGA 157


>gi|284991601|ref|YP_003410155.1| crossover junction endodeoxyribonuclease RuvC [Geodermatophilus
           obscurus DSM 43160]
 gi|284064846|gb|ADB75784.1| crossover junction endodeoxyribonuclease RuvC [Geodermatophilus
           obscurus DSM 43160]
          Length = 188

 Score = 67.4 bits (163), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 59/155 (38%), Positives = 89/155 (57%), Gaps = 4/155 (2%)

Query: 5   IRIIGIDPGLRRTGWGIVD-VAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++GIDPGL R GWG+VD   G     V  G + +     L  RL +L+  +T +++  
Sbjct: 1   MRVLGIDPGLTRCGWGVVDGRPGARPTAVGVGVVRTAAELDLELRLLELHTAVTALLREH 60

Query: 64  RPEEAAVEQVFV-NKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
           RP+  A+E+VF  N    AT     A   A+ +    R PV+ + P+ +K A+ G G  D
Sbjct: 61  RPDVVAIERVFTQNNKGTATGTAQAAGVAALAAAQADR-PVAWHTPSEVKAAISGSGRAD 119

Query: 123 KKQIHMML-KMLMPESFFKGKDAADALAIAVCHAY 156
           K+Q+ +M+ ++L   S  K  DAADALA+AVCHA+
Sbjct: 120 KEQVTLMVTRVLELASPPKPADAADALALAVCHAW 154


>gi|223938503|ref|ZP_03630395.1| crossover junction endodeoxyribonuclease RuvC [bacterium Ellin514]
 gi|223892765|gb|EEF59234.1| crossover junction endodeoxyribonuclease RuvC [bacterium Ellin514]
          Length = 193

 Score = 67.0 bits (162), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 69/128 (53%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+G+DP LR TG+GI+ +A      +  GTI        +  L ++ + L DVIK  +P 
Sbjct: 31  ILGVDPSLRGTGFGIIRLAKPYPQTLVHGTISCPATWEHSRCLVKIAQTLRDVIKQHQPT 90

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+E +F  ++    L +G+AR  A+ +   A + + E AP  +K+A++G G   K  +
Sbjct: 91  VCAIEGLFFAQNLQTALIMGEARGAAMATIGEAGLEIFEIAPRKVKQAIVGYGAAQKMAV 150

Query: 127 HMMLKMLM 134
             M++ ++
Sbjct: 151 AKMVQRML 158


>gi|227496224|ref|ZP_03926521.1| crossover junction endodeoxyribonuclease RuvC [Actinomyces
           urogenitalis DSM 15434]
 gi|226834239|gb|EEH66622.1| crossover junction endodeoxyribonuclease RuvC [Actinomyces
           urogenitalis DSM 15434]
          Length = 167

 Score = 67.0 bits (162), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 50/153 (32%), Positives = 81/153 (52%), Gaps = 2/153 (1%)

Query: 7   IIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           ++G+DPGL R G G VD+ A      V  G + +    S   RL  + + L D I    P
Sbjct: 1   MLGVDPGLTRCGLGCVDIDARRRARLVEVGVVRTPPSMSPELRLAAIADALDDWIARLGP 60

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
              +VE+VF   +  + + + Q   + +++ A A + V+++ P+  K AV G G  DK Q
Sbjct: 61  TSVSVERVFAQDNLRSVISVAQVMGVVMVAGARAGLEVAQHTPSEAKAAVTGSGTADKPQ 120

Query: 126 IHMML-KMLMPESFFKGKDAADALAIAVCHAYH 157
           +  M+ ++L  ++  K  DAADALA A+CH + 
Sbjct: 121 VQAMVARILGLDAPPKPADAADALAQAICHGWR 153


>gi|227495490|ref|ZP_03925806.1| crossover junction endodeoxyribonuclease [Actinomyces coleocanis
           DSM 15436]
 gi|226831037|gb|EEH63420.1| crossover junction endodeoxyribonuclease [Actinomyces coleocanis
           DSM 15436]
          Length = 210

 Score = 67.0 bits (162), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 70/131 (53%), Gaps = 1/131 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++GIDPG+ R G G+VDV A      V      S  + +  FRL  + + +  VI  +
Sbjct: 1   MRVLGIDPGITRCGIGVVDVDAMRRTTLVHVEVARSDQKIATHFRLKTIADAIDRVIAQF 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +PE  A+E+VF  ++  +     Q    A++  A A +P++ + P+ +K AV G G  +K
Sbjct: 61  QPEVVAIERVFAQENLQSVTTTMQVMGAAMVCAARAGLPLAIHTPSEVKAAVTGNGVANK 120

Query: 124 KQIHMMLKMLM 134
            Q+  M+  ++
Sbjct: 121 SQVQAMVARVL 131


>gi|37522869|ref|NP_926246.1| Holliday junction resolvase [Gloeobacter violaceus PCC 7421]
 gi|44888386|sp|Q7NG73|RUVC_GLOVI RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|35213871|dbj|BAC91241.1| crossover junction endodeoxyribonuclease [Gloeobacter violaceus PCC
           7421]
          Length = 173

 Score = 67.0 bits (162), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 67/126 (53%), Gaps = 6/126 (4%)

Query: 5   IRIIGIDPGLRRTGWGIVDV---AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           +RI+G+DPG+   G+G++D    A   +C    G + +  + +   RL  +YE +  +  
Sbjct: 4   MRILGLDPGVAILGYGVLDFFDSAPPVVC--DYGIVQTSAKTAFEARLAAIYEDINSLFS 61

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
             +P+  A+E++F  K    T+ + QAR + +L  A   +P  E++P  +K A+ G G  
Sbjct: 62  AHKPDLVAIEKLFFYKMG-NTISVAQARGVVLLCAAQHGVPYVEFSPPQVKLALTGDGRA 120

Query: 122 DKKQIH 127
           DK+ I 
Sbjct: 121 DKRAIQ 126


>gi|229491983|ref|ZP_04385800.1| crossover junction endodeoxyribonuclease RuvC [Rhodococcus
           erythropolis SK121]
 gi|229321115|gb|EEN86919.1| crossover junction endodeoxyribonuclease RuvC [Rhodococcus
           erythropolis SK121]
          Length = 189

 Score = 67.0 bits (162), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 52/156 (33%), Positives = 88/156 (56%), Gaps = 2/156 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G G+VD + G  +  ++   + +     L  RL ++ +     I+ +
Sbjct: 1   MRVLGVDPGLTRCGLGVVDGSNGRKVRPIAVDVVRTPAEMDLGSRLLRISDAAELWIEQY 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +PE  A+E+VF   +    +   QA  +  L+ A   IPV  + P+ +K AV G G+ DK
Sbjct: 61  KPEVVAIERVFAQHNVSTAMGTAQAGGVVALAAARRGIPVCFHTPSEVKAAVTGSGNADK 120

Query: 124 KQIH-MMLKMLMPESFFKGKDAADALAIAVCHAYHA 158
            Q+  M+ ++L  ++  K  DAADALA+A+CH + A
Sbjct: 121 AQVTAMVTRILNLKTAPKPADAADALALAICHCWRA 156


>gi|258653557|ref|YP_003202713.1| crossover junction endodeoxyribonuclease RuvC [Nakamurella
           multipartita DSM 44233]
 gi|258556782|gb|ACV79724.1| crossover junction endodeoxyribonuclease RuvC [Nakamurella
           multipartita DSM 44233]
          Length = 181

 Score = 67.0 bits (162), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 69/132 (52%), Gaps = 3/132 (2%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLC--FVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
           +R++G+DPGL R G G+VD  G  L    V    + +     LA RL Q+   +  ++  
Sbjct: 1   MRVLGVDPGLTRCGIGVVD-GGPGLPPRAVEVMVVRTPADAPLAERLLQIAVRVEAMMDR 59

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
            +P+  A+E+VF   +    +   QA  +  L+ A   IPV+ + P+ +K AV G G+ D
Sbjct: 60  HQPDTVAIERVFSQHNVRTVMGTAQASGVVALAAARRGIPVAWHTPSEVKAAVSGHGNAD 119

Query: 123 KKQIHMMLKMLM 134
           K Q+  M+  L+
Sbjct: 120 KAQVTAMITRLL 131


>gi|68536133|ref|YP_250838.1| Holliday junction resolvase [Corynebacterium jeikeium K411]
 gi|68263732|emb|CAI37220.1| crossover junction endodeoxyribonuclease [Corynebacterium jeikeium
           K411]
          Length = 187

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 83/156 (53%), Gaps = 2/156 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++GIDPGL R G  +V    G  +  V+ G + +     +  RL +L++ +     ++
Sbjct: 22  LRVMGIDPGLTRCGLSVVQAGKGRAVYPVAVGVVRTPSDMPVEQRLNKLFDAVEQWFDDY 81

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +P   A+E+VF   +    +    A  + +L+ A   + V  Y P+ +KK++ G G  DK
Sbjct: 82  QPHVVALERVFERSNVSTVMNTAHASGVLMLAAARRGVDVHMYTPSEVKKSISGNGRADK 141

Query: 124 KQI-HMMLKMLMPESFFKGKDAADALAIAVCHAYHA 158
            Q+  M+ ++L      K  DAADALA+AVCH + A
Sbjct: 142 AQMTRMITRILGLSEAPKPPDAADALALAVCHCWRA 177


>gi|120403559|ref|YP_953388.1| Holliday junction resolvase [Mycobacterium vanbaalenii PYR-1]
 gi|166233273|sp|A1T882|RUVC_MYCVP RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|119956377|gb|ABM13382.1| Holliday junction endonuclease RuvC [Mycobacterium vanbaalenii
           PYR-1]
          Length = 194

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 83/156 (53%), Gaps = 2/156 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G  +++   G  +  +    + +     LA RL  + + +   +   
Sbjct: 1   MRVMGVDPGLTRCGLSVIESGKGRQVIALDVDVVRTPAGHPLAHRLLAISDAVDHWLDTH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RP+  A+E+VF N++A   +   QA  +  L+ A   I V  + P+ +K AV G G  DK
Sbjct: 61  RPDVIAIERVFSNQNANTAMGTAQAGGVIALAAARRDIDVHFHTPSEVKAAVTGNGRADK 120

Query: 124 KQI-HMMLKMLMPESFFKGKDAADALAIAVCHAYHA 158
            Q+  M+ ++L  +      DAADALA+A+CH + A
Sbjct: 121 AQVTEMVTRILALQQKPTPADAADALALAICHCWRA 156


>gi|256825359|ref|YP_003149319.1| Holliday junction endonuclease RuvC [Kytococcus sedentarius DSM
           20547]
 gi|256688752|gb|ACV06554.1| Holliday junction endonuclease RuvC [Kytococcus sedentarius DSM
           20547]
          Length = 208

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 69/131 (52%), Gaps = 1/131 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVD-VAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G G+V+   G +L  V+     +        RL  +   + D I+ +
Sbjct: 1   MRVLGVDPGLTRCGLGVVEGRRGGSLRMVAVDVARTSADTLPEQRLLSVSRRIEDWIETY 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P+  AVE++F   D    +   QA  +A+++ A A I V ++ P+ +K AV G G   K
Sbjct: 61  DPDAVAVERIFARSDVSTIMGTVQASGVALVAAARAGIEVGQHTPSEVKAAVCGNGRAGK 120

Query: 124 KQIHMMLKMLM 134
           +Q+  M+  ++
Sbjct: 121 EQVTSMVVRIL 131


>gi|226366280|ref|YP_002784063.1| Holliday junction resolvase [Rhodococcus opacus B4]
 gi|254767482|sp|C1B4C9|RUVC_RHOOB RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|226244770|dbj|BAH55118.1| Holliday junction endonuclease RuvC [Rhodococcus opacus B4]
          Length = 189

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/156 (34%), Positives = 85/156 (54%), Gaps = 2/156 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G+G+VD   G  +  V+   + +     L+ RL ++ E     I   
Sbjct: 1   MRVLGVDPGLTRCGFGVVDGGNGRTVTPVAVDVVRTPADLELSSRLLRISEAAESWIDLH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RPE  A+E+VF   +    +   QA  +  L+ A   IPV  + P+ +K AV G G  DK
Sbjct: 61  RPEVVAIERVFAQHNVRTAMGTAQAGGVVALAAARRGIPVCFHTPSEVKAAVTGSGSADK 120

Query: 124 KQIH-MMLKMLMPESFFKGKDAADALAIAVCHAYHA 158
            Q+  M+ ++L   +  +  DAADALA+A+CH + A
Sbjct: 121 AQVTAMVTRILKLAAAPRPADAADALALAICHCWRA 156


>gi|84496342|ref|ZP_00995196.1| Holliday junction resolvase [Janibacter sp. HTCC2649]
 gi|84383110|gb|EAP98991.1| Holliday junction resolvase [Janibacter sp. HTCC2649]
          Length = 165

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/149 (34%), Positives = 77/149 (51%), Gaps = 1/149 (0%)

Query: 10  IDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAA 69
           +DPGL R G G+VD        V+ G + +      + RL  L   L   +  + P+  A
Sbjct: 1   MDPGLTRCGLGVVDGRAGRATMVAVGVVRTPSDAVPSQRLIFLERELDGWLDKFTPDVMA 60

Query: 70  VEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIH-M 128
           VE+VF + +    +    A AIA+L+     IPV  + P  +K +V G G  DK Q+  M
Sbjct: 61  VERVFADTNVTQVMNTAHATAIALLTAGKRGIPVVFHTPTEVKASVTGSGRADKAQVTAM 120

Query: 129 MLKMLMPESFFKGKDAADALAIAVCHAYH 157
           + ++L  +S  K  DAADALA+A+CH + 
Sbjct: 121 VTRILKLDSPPKPADAADALALAICHLWR 149


>gi|149197374|ref|ZP_01874425.1| crossover junction endodeoxyribonuclease RuvC [Lentisphaera
           araneosa HTCC2155]
 gi|149139392|gb|EDM27794.1| crossover junction endodeoxyribonuclease RuvC [Lentisphaera
           araneosa HTCC2155]
          Length = 151

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 61/107 (57%), Gaps = 1/107 (0%)

Query: 49  LCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAP 108
           L +L+  +T +I+ ++P+  ++E  F +K A   + LG AR   + + A   +PV EY+P
Sbjct: 29  LKRLHVAITQLIELYKPDHISIEGTFYSKFAKTAMILGMARGSVLSALAGTDLPVWEYSP 88

Query: 109 NTIKKAVIGVGHGDKKQIHMMLKMLMPESFFK-GKDAADALAIAVCH 154
              K+A+ G G   K+Q+  M+  ++     +   DA DALA+AVCH
Sbjct: 89  KRAKQAITGSGDASKEQVAFMIAGILQADVSQINDDATDALALAVCH 135


>gi|226306410|ref|YP_002766370.1| Holliday junction endonuclease RuvC [Rhodococcus erythropolis PR4]
 gi|259495692|sp|C0ZZ46|RUVC_RHOE4 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|226185527|dbj|BAH33631.1| Holliday junction endonuclease RuvC [Rhodococcus erythropolis PR4]
          Length = 189

 Score = 66.2 bits (160), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/156 (33%), Positives = 88/156 (56%), Gaps = 2/156 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G G+VD + G  +  ++   + +     L  RL ++ +     I+ +
Sbjct: 1   MRVLGVDPGLTRCGLGVVDGSNGRKVRPIAVDVVRTPPEMDLGSRLLRISDAAELWIEQY 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +PE  A+E+VF   +    +   QA  +  L+ A   IPV  + P+ +K AV G G+ DK
Sbjct: 61  KPEVVAIERVFAQHNVSTAMGTAQAGGVVALAAARRGIPVCFHTPSEVKAAVTGSGNADK 120

Query: 124 KQIH-MMLKMLMPESFFKGKDAADALAIAVCHAYHA 158
            Q+  M+ ++L  ++  K  DAADALA+A+CH + A
Sbjct: 121 AQVTAMVTRILNLKTAPKPADAADALALAICHCWRA 156


>gi|296393858|ref|YP_003658742.1| crossover junction endodeoxyribonuclease RuvC [Segniliparus
           rotundus DSM 44985]
 gi|296181005|gb|ADG97911.1| crossover junction endodeoxyribonuclease RuvC [Segniliparus
           rotundus DSM 44985]
          Length = 189

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 67/131 (51%), Gaps = 1/131 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G  +V+  +G ++  +      +  + SL  RL ++   +   + + 
Sbjct: 1   MRVMGVDPGLTRCGLALVETGSGRSVTALDVDVCHTSPQASLQDRLSKIAAEVEHWLDSH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RP+  AVEQVF   +    + + Q   +  L  A   IP+  + P+ +K AV G G  DK
Sbjct: 61  RPDVVAVEQVFAQHNVRTVMGVAQVSGVVALLSAKRSIPMRTHTPSEVKAAVTGNGRADK 120

Query: 124 KQIHMMLKMLM 134
            Q+  M+  ++
Sbjct: 121 DQVTAMVTRIL 131


>gi|171742913|ref|ZP_02918720.1| hypothetical protein BIFDEN_02030 [Bifidobacterium dentium ATCC
           27678]
 gi|283456065|ref|YP_003360629.1| Crossover junction endodeoxyribonuclease ruvC [Bifidobacterium
           dentium Bd1]
 gi|306822724|ref|ZP_07456102.1| crossover junction endoribonuclease subunit C [Bifidobacterium
           dentium ATCC 27679]
 gi|309800829|ref|ZP_07694961.1| crossover junction endodeoxyribonuclease RuvC [Bifidobacterium
           dentium JCVIHMP022]
 gi|171278527|gb|EDT46188.1| hypothetical protein BIFDEN_02030 [Bifidobacterium dentium ATCC
           27678]
 gi|283102699|gb|ADB09805.1| Crossover junction endodeoxyribonuclease ruvC [Bifidobacterium
           dentium Bd1]
 gi|304554269|gb|EFM42178.1| crossover junction endoribonuclease subunit C [Bifidobacterium
           dentium ATCC 27679]
 gi|308222365|gb|EFO78645.1| crossover junction endodeoxyribonuclease RuvC [Bifidobacterium
           dentium JCVIHMP022]
          Length = 193

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 86/151 (56%), Gaps = 2/151 (1%)

Query: 7   IIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           I+G+DPGL R G G+++  A   L F+    + S  + S   RL  +Y GL + I+ + P
Sbjct: 3   ILGVDPGLTRCGVGVIEAGAYRRLSFIHVDVVRSDPKMSQDLRLLAIYNGLVEKIERFAP 62

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
           +  ++E+VF  ++    L   QA  +A+L+ A   IPV+ + P   K A+ G G  +K Q
Sbjct: 63  DTVSIERVFAQENRNTVLGTAQAAGLAMLAAAQRGIPVALHTPTESKMAITGNGKAEKIQ 122

Query: 126 IHMML-KMLMPESFFKGKDAADALAIAVCHA 155
           +  M+ +ML   +  K  DAADALAIA+CHA
Sbjct: 123 MERMVARMLGLNTLPKPADAADALAIAICHA 153


>gi|311113690|ref|YP_003984912.1| crossover junction endoribonuclease subunit C [Rothia dentocariosa
           ATCC 17931]
 gi|310945184|gb|ADP41478.1| crossover junction endoribonuclease subunit C [Rothia dentocariosa
           ATCC 17931]
          Length = 221

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/153 (32%), Positives = 81/153 (52%), Gaps = 2/153 (1%)

Query: 4   SIRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
           + RI+G+DPGL R G  ++D+ A     F++ G   +   + L  R+ +++      +  
Sbjct: 20  ATRIMGVDPGLTRCGLSMIDMTANRKASFINVGIAGTAAAEPLDERILRIFTVTQTWLDT 79

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
           ++P+  A+E++F  +     +    A    I + A+  IPV  + P+ +K AV G G  D
Sbjct: 80  YQPDALAIERIFAQEQVNTVIGTAHASGAVISAAAVRGIPVFFHTPSEVKAAVTGSGRAD 139

Query: 123 KKQI-HMMLKMLMPESFFKGKDAADALAIAVCH 154
           K  +  M+ K+L  E   K  DAADALAIA+CH
Sbjct: 140 KASVGRMVTKILGLEKIPKPADAADALAIAICH 172


>gi|182439808|ref|YP_001827527.1| Holliday junction resolvase [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|238689024|sp|B1W3G2|RUVC_STRGG RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|178468324|dbj|BAG22844.1| putative Holliday junction nuclease [Streptomyces griseus subsp.
           griseus NBRC 13350]
          Length = 204

 Score = 65.5 bits (158), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 55/156 (35%), Positives = 84/156 (53%), Gaps = 2/156 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++GIDPGL R G G+V+      L  +  G + +     L  RL  +  G+   +   
Sbjct: 1   MRVLGIDPGLTRCGVGVVEGVAGRPLTMIGVGVVRTSSDAELGDRLVAVERGIEQWLDEH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P   AVE+VF   +    +   QA A+A+L  A   IPV+ + P+ +K AV G G  DK
Sbjct: 61  SPGYVAVERVFAQHNVRTVMGTAQASAVAMLCAARRGIPVALHTPSEVKAAVTGSGRADK 120

Query: 124 KQI-HMMLKMLMPESFFKGKDAADALAIAVCHAYHA 158
            Q+  M+ ++L  ++  K  DAADALA+A+CH + A
Sbjct: 121 AQVGAMVTRLLRLDAPPKPADAADALALAICHIWRA 156


>gi|326780472|ref|ZP_08239737.1| crossover junction endodeoxyribonuclease RuvC [Streptomyces cf.
           griseus XylebKG-1]
 gi|326660805|gb|EGE45651.1| crossover junction endodeoxyribonuclease RuvC [Streptomyces cf.
           griseus XylebKG-1]
          Length = 204

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 55/156 (35%), Positives = 84/156 (53%), Gaps = 2/156 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++GIDPGL R G G+V+      L  +  G + +     L  RL  +  G+   +   
Sbjct: 1   MRVLGIDPGLTRCGVGVVEGVAGRPLTMIGVGVVRTSSDADLGDRLVAVERGIEQWLDEH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P   AVE+VF   +    +   QA A+A+L  A   IPV+ + P+ +K AV G G  DK
Sbjct: 61  SPGYVAVERVFAQHNVRTVMGTAQASAVAMLCAARRGIPVALHTPSEVKAAVTGSGRADK 120

Query: 124 KQI-HMMLKMLMPESFFKGKDAADALAIAVCHAYHA 158
            Q+  M+ ++L  ++  K  DAADALA+A+CH + A
Sbjct: 121 AQVGAMVTRLLRLDAPPKPADAADALALAICHIWRA 156


>gi|145594352|ref|YP_001158649.1| Holliday junction resolvase [Salinispora tropica CNB-440]
 gi|145303689|gb|ABP54271.1| Holliday junction endonuclease RuvC [Salinispora tropica CNB-440]
          Length = 160

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 48/90 (53%)

Query: 45  LAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVS 104
           L  RL  L   LT ++   RP+  AVE+VF   +    +   QA  +A+L+ A A +PV 
Sbjct: 26  LPLRLLTLDRSLTALVAEHRPDSVAVERVFSQHNVRTVMGTAQASGVAVLAGARAGLPVQ 85

Query: 105 EYAPNTIKKAVIGVGHGDKKQIHMMLKMLM 134
            Y P+ +K AV G G  DK Q+  M+  L+
Sbjct: 86  TYTPSEVKAAVTGSGQADKAQMTAMVTRLL 115


>gi|292670921|ref|ZP_06604347.1| crossover junction endoribonuclease subunit C [Selenomonas noxia
           ATCC 43541]
 gi|292647542|gb|EFF65514.1| crossover junction endoribonuclease subunit C [Selenomonas noxia
           ATCC 43541]
          Length = 126

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 53/87 (60%), Gaps = 1/87 (1%)

Query: 48  RLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYA 107
           RL ++Y  L  +I+ + P+   VEQ+F N++    + +GQAR I +L+ A   IP+ E  
Sbjct: 6   RLLKIYTELEVLIQKYAPDAMGVEQLFFNRNVTTAIPVGQARGIVLLAAAQNNIPIVERT 65

Query: 108 PNTIKKAVIGVGHGDKKQ-IHMMLKML 133
           P  +K++V G G   K+Q I+M+ K+L
Sbjct: 66  PLQVKQSVTGYGKATKEQVIYMVTKLL 92


>gi|225164199|ref|ZP_03726474.1| Crossover junction endodeoxyribonuclease [Opitutaceae bacterium
           TAV2]
 gi|224801173|gb|EEG19494.1| Crossover junction endodeoxyribonuclease [Opitutaceae bacterium
           TAV2]
          Length = 195

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 75/153 (49%), Gaps = 3/153 (1%)

Query: 6   RIIGIDPGLRRTGWGIVD-VAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +++GIDP LR TG  +V+  AG     +   T+    R  ++  L +++  +T  I  + 
Sbjct: 40  QVLGIDPSLRGTGLALVEFAAGRRPLLLRCQTLRIPARVPMSGALAEIHRAVTTFITEFT 99

Query: 65  PEEAAVEQ-VFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
               A+EQ ++V     A +      A    +  L +  + EYAP  +K+AV+G G   K
Sbjct: 100 VRHVALEQTIYVQNFQTAQILGAARGAAIAAAAVLGK-DIYEYAPLRVKQAVVGAGRASK 158

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
           +Q+   +  L+        D ADA+ +A+CHAY
Sbjct: 159 EQMARTVMALLGHGRPLASDEADAVGVALCHAY 191


>gi|320105197|ref|YP_004180788.1| Crossover junction endodeoxyribonuclease [Isosphaera pallida ATCC
           43644]
 gi|319752479|gb|ADV64239.1| Crossover junction endodeoxyribonuclease [Isosphaera pallida ATCC
           43644]
          Length = 221

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 88/174 (50%), Gaps = 29/174 (16%)

Query: 6   RIIGIDPGLRRTGWGI-----------VDVAGDNLC-----FVSSGTIVSC---VRQSLA 46
           R++GIDPGL  TG+ +           V + G   C      V +G I S    V +SLA
Sbjct: 42  RVVGIDPGLGVTGYAVLEPGQVVDRSRVGLNGQPYCRPGPVVVEAGVIRSSRGGVGKSLA 101

Query: 47  FRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVAT-LKLGQARAIAILSPALARIPVSE 105
            RL  L+ G+ DV+ ++ P+  A+EQV  +     T + +  AR + +L+  L  +PV  
Sbjct: 102 ARLAALHAGILDVLDSYPPQALALEQVHSHPRHPRTAILMAHARGVIVLAAQLRGVPVVG 161

Query: 106 YAPNTIKKAVIGVGHGDKKQIHMMLKMLM-----PESFFKGKDAADALAIAVCH 154
           Y+ + IKK + G G   K+Q+   +++ +     PE      D ADA A+A+CH
Sbjct: 162 YSASRIKKTLTGSGRAPKEQMQHAVRIELGLVRPPEPH----DVADACAVALCH 211


>gi|329120925|ref|ZP_08249557.1| crossover junction endoribonuclease subunit C [Dialister
           micraerophilus DSM 19965]
 gi|327471384|gb|EGF16835.1| crossover junction endoribonuclease subunit C [Dialister
           micraerophilus DSM 19965]
          Length = 129

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 54/88 (61%)

Query: 4   SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           ++R +GIDPG  R G+GIVD  G+++  V  G I +    SL+ RL  ++ G+ ++I+ +
Sbjct: 33  NMRALGIDPGTGRCGFGIVDKKGNSISAVDYGVIETTKEYSLSERLNIIFTGVNELIEIY 92

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAI 91
           +P+   +E ++ NK+    + + QAR +
Sbjct: 93  KPDVMGIETLYFNKNITTAISVAQARGV 120


>gi|212715817|ref|ZP_03323945.1| hypothetical protein BIFCAT_00718 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661184|gb|EEB21759.1| hypothetical protein BIFCAT_00718 [Bifidobacterium catenulatum DSM
           16992]
          Length = 193

 Score = 64.7 bits (156), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 87/151 (57%), Gaps = 2/151 (1%)

Query: 7   IIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           I+G+DPGL R G G+++  A   L F+    + S  + S   RL  +Y+GL + I+ + P
Sbjct: 3   ILGVDPGLTRCGVGVIEAGAYRRLSFIHVDVVRSDPKMSQDLRLLAIYDGLVEKIERFAP 62

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
           +  ++E+VF  ++    L   QA  +A+L+ A   IPV+ + P   K A+ G G  +K Q
Sbjct: 63  DTVSIERVFAQENRNTVLGTAQAAGLAMLAAAQRGIPVALHTPTESKMAITGNGKAEKIQ 122

Query: 126 IHMML-KMLMPESFFKGKDAADALAIAVCHA 155
           +  M+ ++L   +  K  DAADALAIA+CHA
Sbjct: 123 MERMVSRILGLNTLPKPADAADALAIAICHA 153


>gi|295839915|ref|ZP_06826848.1| crossover junction endodeoxyribonuclease RuvC [Streptomyces sp.
           SPB74]
 gi|295827705|gb|EDY43677.2| crossover junction endodeoxyribonuclease RuvC [Streptomyces sp.
           SPB74]
          Length = 182

 Score = 64.7 bits (156), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 68/129 (52%), Gaps = 1/129 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           ++G+DPGL R G G+V+      L  V  G + +     L+ RL  +  G+ + +   RP
Sbjct: 1   MLGVDPGLTRCGVGVVEGVPGRPLTMVGVGVVRTPADAELSRRLLAVEAGIEEWLDTHRP 60

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
           E  A+E+VF   +    +   QA A+A+L  A   +PV+ + P+ +K AV G G  DK Q
Sbjct: 61  EYVAIERVFSQHNVRTVMGTAQASAVAMLCAARRGLPVALHTPSEVKAAVTGSGRADKAQ 120

Query: 126 IHMMLKMLM 134
           +  M+  L+
Sbjct: 121 VGAMVTRLL 129


>gi|282900755|ref|ZP_06308697.1| Crossover junction endodeoxyribonuclease RuvC [Cylindrospermopsis
           raciborskii CS-505]
 gi|281194555|gb|EFA69510.1| Crossover junction endodeoxyribonuclease RuvC [Cylindrospermopsis
           raciborskii CS-505]
          Length = 192

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 67/129 (51%), Gaps = 8/129 (6%)

Query: 6   RIIGIDPGLRRTGWGIVDV-------AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTD 58
           +I+G+DPGL   G+G + +       +   +  V  G I +     +  RLC L++ L  
Sbjct: 30  QILGLDPGLAIVGFGAISLEQRSAKLSDTTITMVDFGVIHTPSDMEITQRLCTLFDDLHT 89

Query: 59  VIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGV 118
           ++   +P+  A+E++F  + A  T+ + QAR + +L     R+P  E+AP  IK+A+   
Sbjct: 90  LLDQLQPDVVAIERLFFYRMA-NTILVAQARGVIMLVLGQRRLPYLEFAPPQIKQALTSY 148

Query: 119 GHGDKKQIH 127
           G  +K ++ 
Sbjct: 149 GKAEKIEVQ 157


>gi|188996623|ref|YP_001930874.1| Crossover junction endodeoxyribonuclease [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|188931690|gb|ACD66320.1| Crossover junction endodeoxyribonuclease [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 154

 Score = 64.3 bits (155), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 74/150 (49%), Gaps = 6/150 (4%)

Query: 6   RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTI-VSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           RI+ IDP   +TG+ I  +  D    +  G I +   +Q L     +LY+ L + I  + 
Sbjct: 3   RILSIDPSSSKTGYVIAKLEKDEALSLDYGLIELKKEKQPLK----KLYQALEEKILKYT 58

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
            E+  +E  F + +A   +KLG+ R + +L      I V E++P  +K ++ G G   K+
Sbjct: 59  IEKIILETPFYSINAQTLIKLGEVRGVILLLAQNYNIKVEEFSPAEVKISITGYGRSGKE 118

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCH 154
           ++  M+  +   +  K  D ADA AI  C+
Sbjct: 119 EVLEMVNKIFNLN-IKDYDIADAFAILHCY 147


>gi|237785622|ref|YP_002906327.1| crossover junction endodeoxyribonuclease [Corynebacterium
           kroppenstedtii DSM 44385]
 gi|237758534|gb|ACR17784.1| crossover junction endodeoxyribonuclease [Corynebacterium
           kroppenstedtii DSM 44385]
          Length = 191

 Score = 63.9 bits (154), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 82/158 (51%), Gaps = 2/158 (1%)

Query: 3   KSIRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           +  R++G+DPGL R G   V    G ++  V+ G I +     L+ RL  +   + + + 
Sbjct: 15  EGTRVMGVDPGLTRCGISTVQAGRGRSVLPVAVGVIRTDASDDLSTRLLDISVKIDEWMD 74

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
            + P+  A+E+VF        +    A  + I+  A   IPV  Y P+ +KKAV G G  
Sbjct: 75  EYHPDMLAIERVFERGVVSTVMHTAHAVGVIIVCAARRDIPVYMYTPSEVKKAVSGNGRA 134

Query: 122 DKKQIH-MMLKMLMPESFFKGKDAADALAIAVCHAYHA 158
           +KKQ+  M+ ++L      +  DAADALA+A+CH + A
Sbjct: 135 NKKQVTAMVTRVLGLAEPPRPADAADALALAICHCWRA 172


>gi|152967000|ref|YP_001362784.1| Holliday junction resolvase [Kineococcus radiotolerans SRS30216]
 gi|151361517|gb|ABS04520.1| crossover junction endodeoxyribonuclease RuvC [Kineococcus
           radiotolerans SRS30216]
          Length = 207

 Score = 63.9 bits (154), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 70/130 (53%), Gaps = 2/130 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVA--GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++ +DPGL R G G++D    G     V+ G + +     +  RL  + EGL + +   R
Sbjct: 1   MLAVDPGLTRCGIGVIDSVRVGRRAELVAVGVVRTPATDPVEARLLAISEGLEEWLDAHR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  AVE+VF   +  + +   QA  + +++ A   +PV+ + P+ +K AV G G  +K+
Sbjct: 61  PDVVAVERVFAQSNVRSVMGTAQAAGLVLVAAARRGLPVAMHTPSEVKAAVTGSGRAEKE 120

Query: 125 QIHMMLKMLM 134
           Q+ +M+  ++
Sbjct: 121 QVTVMVTRIL 130


>gi|118473848|ref|YP_887262.1| Holliday junction resolvase [Mycobacterium smegmatis str. MC2 155]
 gi|166233270|sp|A0QWH4|RUVC_MYCS2 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|118175135|gb|ABK76031.1| crossover junction endodeoxyribonuclease RuvC [Mycobacterium
           smegmatis str. MC2 155]
          Length = 185

 Score = 63.9 bits (154), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 82/156 (52%), Gaps = 2/156 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G  +++   G  +  +    + +     L  RL  + +     +   
Sbjct: 1   MRVMGVDPGLTRCGLSMIESGKGRQVIALDVDVVRTPADTPLQKRLLTISDAAEHWMDTH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RP+  A+E+VF N++A   +   QA  +  L+ A   I V  + P+ +K AV G G  DK
Sbjct: 61  RPDVIAIERVFANQNANTAMGTAQAGGVIALAAAKRDIEVHFHTPSEVKAAVTGSGRADK 120

Query: 124 KQI-HMMLKMLMPESFFKGKDAADALAIAVCHAYHA 158
            Q+  M+ ++L  ++     DAADALA+A+CH + A
Sbjct: 121 SQVTEMVTRILALQAKPTPADAADALALAICHCWRA 156


>gi|225076157|ref|ZP_03719356.1| hypothetical protein NEIFLAOT_01189 [Neisseria flavescens
           NRL30031/H210]
 gi|224952500|gb|EEG33709.1| hypothetical protein NEIFLAOT_01189 [Neisseria flavescens
           NRL30031/H210]
          Length = 107

 Score = 63.9 bits (154), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 35/83 (42%), Positives = 50/83 (60%)

Query: 73  VFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKM 132
           +FVN +  ATL LGQAR  AI +  +  +PV EY    +K+AV+G G   K+Q+  M+  
Sbjct: 1   MFVNVNPAATLMLGQARGAAIAALVMHDLPVFEYTALQVKQAVVGKGKAAKEQVQHMVVQ 60

Query: 133 LMPESFFKGKDAADALAIAVCHA 155
           ++  S     DAAD LA+A+ HA
Sbjct: 61  MLALSGTPQADAADGLAVALTHA 83


>gi|300787174|ref|YP_003767465.1| crossover junction endodeoxyribonuclease RuvC [Amycolatopsis
           mediterranei U32]
 gi|299796688|gb|ADJ47063.1| crossover junction endodeoxyribonuclease RuvC [Amycolatopsis
           mediterranei U32]
          Length = 196

 Score = 63.5 bits (153), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 51/154 (33%), Positives = 84/154 (54%), Gaps = 2/154 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G G+VD   G  +  V+   + +     LA RL ++ + +   +  +
Sbjct: 3   VRVLGVDPGLTRCGLGVVDGGKGRAVRCVAVDVVRTPADADLAHRLLEISDEVERWMDKY 62

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +P   AVE+VF   +    +   QA  +  L+ A   +PV  + P+ +K AV G G  DK
Sbjct: 63  KPAAVAVERVFAQHNVRTAMGTAQAGGVVALAAARRGLPVVFHTPSEVKAAVSGSGRADK 122

Query: 124 KQIH-MMLKMLMPESFFKGKDAADALAIAVCHAY 156
            Q+  M++++L  E      DAADALA+A+CH +
Sbjct: 123 AQVTAMVMRLLNLEVAPHPADAADALALAICHLW 156


>gi|225352128|ref|ZP_03743151.1| hypothetical protein BIFPSEUDO_03743 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157375|gb|EEG70714.1| hypothetical protein BIFPSEUDO_03743 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 194

 Score = 63.5 bits (153), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 86/151 (56%), Gaps = 2/151 (1%)

Query: 7   IIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           I+G+DPGL R G G+++  A   L F+    + S  + S   RL  +Y GL + I+ + P
Sbjct: 4   ILGVDPGLTRCGVGVIEAGAYRRLSFIHVDVVRSDPKMSQDLRLLAIYNGLVEKIERFAP 63

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
           +  ++E+VF  ++    L   QA  +A+L+ A   IPV+ + P   K A+ G G  +K Q
Sbjct: 64  DTVSIERVFAQENRNTVLGTAQAAGLAMLAAAQRGIPVALHTPTESKMAITGNGKAEKIQ 123

Query: 126 IHMML-KMLMPESFFKGKDAADALAIAVCHA 155
           +  M+ ++L   +  K  DAADALAIA+CHA
Sbjct: 124 MERMVARILGLNTLPKPADAADALAIAICHA 154


>gi|227488785|ref|ZP_03919101.1| crossover junction endodeoxyribonuclease [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227091207|gb|EEI26519.1| crossover junction endodeoxyribonuclease [Corynebacterium
           glucuronolyticum ATCC 51867]
          Length = 175

 Score = 63.5 bits (153), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 51/87 (58%)

Query: 48  RLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYA 107
           RL +LYE +TD I  ++P+  A+E++F   +    L    A  + IL+ + A + V EY 
Sbjct: 4   RLKELYEAITDWIAEYKPDVVAMERLFERGEVSTVLHTAHAVGVLILAASQANLDVHEYT 63

Query: 108 PNTIKKAVIGVGHGDKKQIHMMLKMLM 134
           P+ +KKA+ G G  DKKQ+  M+  ++
Sbjct: 64  PSQVKKAITGNGRADKKQMTAMVTRIL 90


>gi|298492708|ref|YP_003722885.1| crossover junction endodeoxyribonuclease RuvC ['Nostoc azollae'
           0708]
 gi|298234626|gb|ADI65762.1| crossover junction endodeoxyribonuclease RuvC ['Nostoc azollae'
           0708]
          Length = 163

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 67/129 (51%), Gaps = 8/129 (6%)

Query: 6   RIIGIDPGLRRTGWGIVD-------VAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTD 58
           RI+G+DPGL   G+G +        V    +  +  G I +     ++ RL  L++ L  
Sbjct: 4   RILGLDPGLAIIGFGAISWNQSQAKVQYTTVKMLDFGVIRTSADMEMSQRLSTLFDDLHT 63

Query: 59  VIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGV 118
           ++ + +P+  A+E++F  + A  T+ + QAR + +L     ++P  E+AP  IK+A+   
Sbjct: 64  LMDDLQPDLVAIEKLFFYRMA-NTIVVAQARGVLMLVLGQRKLPYVEFAPPQIKQALTNY 122

Query: 119 GHGDKKQIH 127
           G  DK ++ 
Sbjct: 123 GKADKGEVQ 131


>gi|119025821|ref|YP_909666.1| Holliday junction resolvase [Bifidobacterium adolescentis ATCC
           15703]
 gi|154487346|ref|ZP_02028753.1| hypothetical protein BIFADO_01196 [Bifidobacterium adolescentis
           L2-32]
 gi|166231581|sp|A1A1K1|RUVC_BIFAA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|118765405|dbj|BAF39584.1| crossover junction endodeoxyribonuclease ruvC [Bifidobacterium
           adolescentis ATCC 15703]
 gi|154083864|gb|EDN82909.1| hypothetical protein BIFADO_01196 [Bifidobacterium adolescentis
           L2-32]
          Length = 193

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 86/151 (56%), Gaps = 2/151 (1%)

Query: 7   IIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           I+G+DPGL R G G+++  A   L F+    + S  + S   RL  +Y GL + I+ + P
Sbjct: 3   ILGVDPGLTRCGVGVIEAGAYRRLSFIHVDVVRSDPKTSQDLRLLAIYNGLVEKIERFAP 62

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
           +  ++E+VF  ++    L   QA  +A+L+ A   IPV+ + P   K A+ G G  +K Q
Sbjct: 63  DAVSIERVFAQENRNTVLGTAQAAGLAMLAAAQRGIPVALHTPTESKLAITGNGKAEKIQ 122

Query: 126 IHMML-KMLMPESFFKGKDAADALAIAVCHA 155
           +  M+ ++L   +  K  DAADALAIA+CHA
Sbjct: 123 MERMVARILGLNTLPKPADAADALAIAICHA 153


>gi|187611522|sp|A3PYW3|RUVC_MYCSJ RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|187611523|sp|A1UFA2|RUVC_MYCSK RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|187611524|sp|Q1B9R1|RUVC_MYCSS RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
          Length = 185

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 83/156 (53%), Gaps = 2/156 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G  +++   G  +  +    + +   + L  RL  + + +   +   
Sbjct: 1   MRVMGVDPGLTRCGLSVIESGQGRKVIALDVDVVRTPADEQLHRRLLIISDTVEHWMDTH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RP+  A+E+VF N +A   +   QA  +  L+ A   I V  + P+ +K AV G G  DK
Sbjct: 61  RPDVIAIERVFANHNANTAMGTAQAGGVIALAAAKRDIDVHFHTPSEVKAAVTGNGRADK 120

Query: 124 KQI-HMMLKMLMPESFFKGKDAADALAIAVCHAYHA 158
            Q+  M+ ++L  ++     DAADALA+A+CH + A
Sbjct: 121 AQVTEMVTRILALQAKPTPADAADALALAICHCWRA 156


>gi|260578828|ref|ZP_05846735.1| Holliday junction nuclease [Corynebacterium jeikeium ATCC 43734]
 gi|97274756|sp|Q4JVD7|RUVC_CORJK RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|258603126|gb|EEW16396.1| Holliday junction nuclease [Corynebacterium jeikeium ATCC 43734]
          Length = 163

 Score = 62.8 bits (151), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/153 (31%), Positives = 80/153 (52%), Gaps = 2/153 (1%)

Query: 8   IGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           +GIDPGL R G  +V    G  +  V+ G + +     +  RL +L++ +     +++P 
Sbjct: 1   MGIDPGLTRCGLSVVQAGKGRAVYPVAVGVVRTPSDMPVEQRLNKLFDAVEQWFDDYQPH 60

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+E+VF   +    +    A  + +L+ A   + V  Y P+ +KK++ G G  DK Q+
Sbjct: 61  VVALERVFERSNVSTVMNTAHASGVLMLAAARRGVDVHMYTPSEVKKSISGNGRADKAQM 120

Query: 127 -HMMLKMLMPESFFKGKDAADALAIAVCHAYHA 158
             M+ ++L      K  DAADALA+AVCH + A
Sbjct: 121 TRMITRILGLSEAPKPPDAADALALAVCHCWRA 153


>gi|54025667|ref|YP_119909.1| Holliday junction resolvase [Nocardia farcinica IFM 10152]
 gi|81602597|sp|Q5YTE6|RUVC_NOCFA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|54017175|dbj|BAD58545.1| putative Holliday junction nuclease [Nocardia farcinica IFM 10152]
          Length = 189

 Score = 62.8 bits (151), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/156 (32%), Positives = 82/156 (52%), Gaps = 2/156 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G  +V+   G  +  +    + +     LA RL  + +     +   
Sbjct: 1   MRVMGVDPGLTRCGLSMVEGGHGRTVTALDVDVVRTPADMDLAHRLMLVADAAEYWMDTH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RP   A+E+VF   +    +   QA  +  L+ A   IPV  + P+ +K AV G G+ DK
Sbjct: 61  RPGAVAIERVFAQHNVRTAMGTAQAGGVIALAAARRDIPVVFHTPSEVKAAVTGNGNADK 120

Query: 124 KQIH-MMLKMLMPESFFKGKDAADALAIAVCHAYHA 158
            Q+  M+ ++L  ++  K  DAADALA+A+CH + A
Sbjct: 121 AQVTAMVTRILGLQTAPKPADAADALALAICHCWRA 156


>gi|239939965|ref|ZP_04691902.1| Holliday junction resolvase [Streptomyces roseosporus NRRL 15998]
 gi|239986449|ref|ZP_04707113.1| Holliday junction resolvase [Streptomyces roseosporus NRRL 11379]
 gi|291443396|ref|ZP_06582786.1| holliday junction resolvase [Streptomyces roseosporus NRRL 15998]
 gi|291346343|gb|EFE73247.1| holliday junction resolvase [Streptomyces roseosporus NRRL 15998]
          Length = 246

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/156 (34%), Positives = 85/156 (54%), Gaps = 2/156 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G G+V+      L  +  G + +     L  RL  +  G+   +  +
Sbjct: 1   MRVLGVDPGLTRCGVGVVEGVAGRPLTMLGVGVVRTSSDAELGDRLVAVERGIEAWLDEY 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P   AVE+VF   +    +   QA AIA+L  A   IPV+ + P+ +K AV G G  +K
Sbjct: 61  SPGCVAVERVFAQHNVRTVMGTAQASAIAMLCAARRGIPVALHTPSEVKAAVTGSGRAEK 120

Query: 124 KQI-HMMLKMLMPESFFKGKDAADALAIAVCHAYHA 158
            Q+  M+ ++L  ++  K  DAADALA+A+CH + A
Sbjct: 121 AQVGAMVTRLLRLDAPPKPADAADALALAICHIWRA 156


>gi|311742329|ref|ZP_07716138.1| crossover junction endoribonuclease subunit C [Aeromicrobium
           marinum DSM 15272]
 gi|311313957|gb|EFQ83865.1| crossover junction endoribonuclease subunit C [Aeromicrobium
           marinum DSM 15272]
          Length = 169

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/128 (31%), Positives = 64/128 (50%), Gaps = 1/128 (0%)

Query: 8   IGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           +GIDPGL R G G+V+ + G  L  +    + +      A RL  L +G+ + +   RP+
Sbjct: 1   MGIDPGLTRLGLGVVEGSVGRPLTMLDVDVLRTPADLDPARRLRILADGIEERLLLHRPD 60

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             AVE+VF   +    +   Q   +A++  A   I V  + P+ +K AV G G  DK Q+
Sbjct: 61  AVAVERVFSQHNVRTVMGTAQVSGVAMMLAARHGIEVHLHTPSEVKAAVTGSGRADKAQV 120

Query: 127 HMMLKMLM 134
             M+  L+
Sbjct: 121 TQMVTRLL 128


>gi|307944537|ref|ZP_07659877.1| crossover junction endodeoxyribonuclease RuvC [Roseibium sp.
           TrichSKD4]
 gi|307772286|gb|EFO31507.1| crossover junction endodeoxyribonuclease RuvC [Roseibium sp.
           TrichSKD4]
          Length = 97

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/61 (59%), Positives = 48/61 (78%)

Query: 97  ALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
           +LA + V+EYAPN +KK V+G GH +K QI  M+K+LMP++ F   DAADALAIA+CHA+
Sbjct: 23  SLAGLSVAEYAPNLVKKTVVGTGHAEKDQIRAMVKVLMPKAVFNSDDAADALAIAICHAH 82

Query: 157 H 157
           H
Sbjct: 83  H 83


>gi|22298680|ref|NP_681927.1| Holliday junction resolvase [Thermosynechococcus elongatus BP-1]
 gi|34222864|sp|Q8DJT5|RUVC_THEEB RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|22294860|dbj|BAC08689.1| Holliday juction resolvase [Thermosynechococcus elongatus BP-1]
          Length = 159

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 63/122 (51%), Gaps = 1/122 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+G+DPGL   G+G ++V  D       G I +        RL  LY  L  +I   +
Sbjct: 1   MRILGLDPGLATLGYGCIEVYRDTCQVRDFGVITTSADLPTGDRLQSLYNDLHTLIPILQ 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  A+E++F  + +  T+ + QAR + +L  +    P+ E  P  +K+A+ G G+  K 
Sbjct: 61  PDLVALERLFFYRMS-HTIGVAQARGVILLVLSQRHCPLLELTPPQVKQALTGYGNATKI 119

Query: 125 QI 126
           ++
Sbjct: 120 EV 121


>gi|218290751|ref|ZP_03494833.1| Holliday junction resolvasome endonuclease subunit-like protein
           [Alicyclobacillus acidocaldarius LAA1]
 gi|218239289|gb|EED06488.1| Holliday junction resolvasome endonuclease subunit-like protein
           [Alicyclobacillus acidocaldarius LAA1]
          Length = 210

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 67/147 (45%), Gaps = 9/147 (6%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GID G R  GW ++D+ GD   ++  G I      +L   +  L+  + ++I+N+ 
Sbjct: 1   MRILGIDHGTRYAGWAVLDIKGDKHEWLGYGLITLTDEDTLDATMGALHTSVENLIQNYE 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P   A+E+    +    T  L +    A L+  L  IP+ +  P  +K    G G  +K 
Sbjct: 61  PTIVALEEPMAMRSGKVTRVLIEMYTTARLAAVLRHIPIIDVTPQKLKLYTAGHGGAEKD 120

Query: 125 QIHMML---------KMLMPESFFKGK 142
            +   L         ++ +PE +  GK
Sbjct: 121 DVARALCEHYGLEYDEIAVPEYYKTGK 147


>gi|300741596|ref|ZP_07071617.1| crossover junction endodeoxyribonuclease RuvC [Rothia dentocariosa
           M567]
 gi|300380781|gb|EFJ77343.1| crossover junction endodeoxyribonuclease RuvC [Rothia dentocariosa
           M567]
          Length = 198

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 78/149 (52%), Gaps = 2/149 (1%)

Query: 8   IGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           +G+DPGL R G  ++D+ A     F++ G   +   + L  R+ +++      +  ++P+
Sbjct: 1   MGVDPGLTRCGLSMIDMTANRKASFINVGIAGTAAAEPLDERILRIFTVTQTWLDTYQPD 60

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+E++F  +     +    A    I + A+  IPV  + P+ +K AV G G  DK  +
Sbjct: 61  ALAIERIFAQEQVNTVIGTAHASGAVISAAAVRGIPVFFHTPSEVKAAVTGSGRADKASV 120

Query: 127 -HMMLKMLMPESFFKGKDAADALAIAVCH 154
             M+ K+L  E   K  DAADALAIA+CH
Sbjct: 121 GRMVTKILGLEKIPKPADAADALAIAICH 149


>gi|224283113|ref|ZP_03646435.1| Holliday junction resolvase [Bifidobacterium bifidum NCIMB 41171]
 gi|310287482|ref|YP_003938740.1| crossover junction endodeoxyribonuclease ruvC [Bifidobacterium
           bifidum S17]
 gi|313140263|ref|ZP_07802456.1| crossover junction endodeoxyribonuclease ruvC [Bifidobacterium
           bifidum NCIMB 41171]
 gi|309251418|gb|ADO53166.1| crossover junction endodeoxyribonuclease ruvC [Bifidobacterium
           bifidum S17]
 gi|313132773|gb|EFR50390.1| crossover junction endodeoxyribonuclease ruvC [Bifidobacterium
           bifidum NCIMB 41171]
          Length = 193

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 55/152 (36%), Positives = 84/152 (55%), Gaps = 4/152 (2%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDN--LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           I+G+DPGL R G G+++ AG N  L F+    + S    S   RL  +Y GL   +  + 
Sbjct: 3   ILGVDPGLTRCGVGVIE-AGANRRLSFIHVDVVRSDPHTSQDLRLLTIYNGLCSKMDRFI 61

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  ++E+VF   +    L   QA  +A+L+ A   IPV+ + P   K A+ G G  +K 
Sbjct: 62  PDAVSIERVFAQSNRNTVLGTAQAAGMAMLAAAQRGIPVALHTPTEAKLAITGNGKAEKI 121

Query: 125 QIHMML-KMLMPESFFKGKDAADALAIAVCHA 155
           QI  M+ K+L   +  +  DAADAL++A+CHA
Sbjct: 122 QIERMVAKVLGLNTLPQPADAADALSLAICHA 153


>gi|302517992|ref|ZP_07270334.1| crossover junction endodeoxyribonuclease RuvC [Streptomyces sp.
           SPB78]
 gi|302426887|gb|EFK98702.1| crossover junction endodeoxyribonuclease RuvC [Streptomyces sp.
           SPB78]
          Length = 179

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 54/153 (35%), Positives = 82/153 (53%), Gaps = 2/153 (1%)

Query: 10  IDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEA 68
           +DPGL R G G+VD      L  V  G + +     L+ RL  +  G+ + +   RPE  
Sbjct: 1   MDPGLTRCGVGVVDGVPGRPLTMVGVGVVRTPADAELSRRLLAVEAGIEEWLDTHRPEYV 60

Query: 69  AVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI-H 127
           A+E+VF   +    +   QA A+A+L  A   +PV+ + P+ +K AV G G  DK Q+  
Sbjct: 61  AIERVFSQHNVRTVMGTAQASAVAMLCAARRGLPVALHTPSEVKAAVTGSGRADKAQVGA 120

Query: 128 MMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           M+ ++L      K  DAADALA+A+CH + A +
Sbjct: 121 MVTRLLRLAEPPKPADAADALALAICHIWRAPT 153


>gi|262202230|ref|YP_003273438.1| crossover junction endodeoxyribonuclease RuvC [Gordonia bronchialis
           DSM 43247]
 gi|262085577|gb|ACY21545.1| crossover junction endodeoxyribonuclease RuvC [Gordonia bronchialis
           DSM 43247]
          Length = 189

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 79/154 (51%), Gaps = 2/154 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G  +V+   G  +  +    + +     LA RL  +Y      I   
Sbjct: 1   MRVMGVDPGLTRCGIALVESGRGRAVTALDVDVVRTPTDMELADRLLAVYTAACHWIDVH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +P+  A+E+VF        +   QA  +  L+     IPV  + P+ +K AV G G  DK
Sbjct: 61  QPDVVAIERVFAQNQVSTAMGTAQAGGVIALAAGQRGIPVRFHTPSEVKAAVTGSGRADK 120

Query: 124 KQIH-MMLKMLMPESFFKGKDAADALAIAVCHAY 156
            Q+  M+ ++L  ++  +  DAADALA+A+CH +
Sbjct: 121 AQVTAMVTRILGMQTKPRPADAADALALAICHCW 154


>gi|117928552|ref|YP_873103.1| Holliday junction endonuclease RuvC [Acidothermus cellulolyticus
           11B]
 gi|187611410|sp|A0LUK7|RUVC_ACIC1 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|117649015|gb|ABK53117.1| Holliday junction endonuclease RuvC [Acidothermus cellulolyticus
           11B]
          Length = 178

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 44/134 (32%), Positives = 66/134 (49%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           MR   R++G+DPGL R G G+VD        V    + +     L  RL  L +GL   +
Sbjct: 8   MRSIRRVMGVDPGLTRCGIGVVDGYPGLARLVGVDVLHTPADAELGDRLAALEDGLVQWL 67

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
               P+  AVE+VF   +    +   QA A+A+L  A   +PV  + P+ +K AV G G 
Sbjct: 68  DRAAPDVVAVERVFSQHNVRTVMGTAQAGAVALLVAARRGVPVVWHTPSEVKAAVTGQGR 127

Query: 121 GDKKQIHMMLKMLM 134
             K Q+  M++ L+
Sbjct: 128 AGKDQVAFMVRRLL 141


>gi|15609731|ref|NP_217110.1| Holliday junction resolvase [Mycobacterium tuberculosis H37Rv]
 gi|15842134|ref|NP_337171.1| Holliday junction resolvase [Mycobacterium tuberculosis CDC1551]
 gi|31793778|ref|NP_856271.1| Holliday junction resolvase [Mycobacterium bovis AF2122/97]
 gi|121638479|ref|YP_978703.1| Holliday junction resolvase [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|148662433|ref|YP_001283956.1| Holliday junction resolvase [Mycobacterium tuberculosis H37Ra]
 gi|148823789|ref|YP_001288543.1| Holliday junction resolvase [Mycobacterium tuberculosis F11]
 gi|167967068|ref|ZP_02549345.1| Holliday junction resolvase [Mycobacterium tuberculosis H37Ra]
 gi|215404544|ref|ZP_03416725.1| Holliday junction resolvase [Mycobacterium tuberculosis 02_1987]
 gi|215412370|ref|ZP_03421130.1| Holliday junction resolvase [Mycobacterium tuberculosis 94_M4241A]
 gi|215427997|ref|ZP_03425916.1| Holliday junction resolvase [Mycobacterium tuberculosis T92]
 gi|215431549|ref|ZP_03429468.1| Holliday junction resolvase [Mycobacterium tuberculosis EAS054]
 gi|215446845|ref|ZP_03433597.1| Holliday junction resolvase [Mycobacterium tuberculosis T85]
 gi|218754332|ref|ZP_03533128.1| Holliday junction resolvase [Mycobacterium tuberculosis GM 1503]
 gi|219558598|ref|ZP_03537674.1| Holliday junction resolvase [Mycobacterium tuberculosis T17]
 gi|224990973|ref|YP_002645660.1| Holliday junction resolvase [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|253798324|ref|YP_003031325.1| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
           tuberculosis KZN 1435]
 gi|254232712|ref|ZP_04926039.1| crossover junction endodeoxyribonuclease ruvC (holliday junction
           nuclease) [Mycobacterium tuberculosis C]
 gi|254365263|ref|ZP_04981308.1| crossover junction endodeoxyribonuclease ruvC (holliday junction
           nuclease) [Mycobacterium tuberculosis str. Haarlem]
 gi|254551645|ref|ZP_05142092.1| Holliday junction resolvase [Mycobacterium tuberculosis '98-R604
           INH-RIF-EM']
 gi|260187607|ref|ZP_05765081.1| Holliday junction resolvase [Mycobacterium tuberculosis CPHL_A]
 gi|260201722|ref|ZP_05769213.1| Holliday junction resolvase [Mycobacterium tuberculosis T46]
 gi|260205916|ref|ZP_05773407.1| Holliday junction resolvase [Mycobacterium tuberculosis K85]
 gi|289444133|ref|ZP_06433877.1| crossover junction endodeoxyribonuclease RuvC [Mycobacterium
           tuberculosis T46]
 gi|289448244|ref|ZP_06437988.1| crossover junction endodeoxyribonuclease RuvC [Mycobacterium
           tuberculosis CPHL_A]
 gi|289553617|ref|ZP_06442827.1| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
           tuberculosis KZN 605]
 gi|289570765|ref|ZP_06450992.1| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
           tuberculosis T17]
 gi|289575304|ref|ZP_06455531.1| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
           tuberculosis K85]
 gi|289746387|ref|ZP_06505765.1| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
           tuberculosis 02_1987]
 gi|289751218|ref|ZP_06510596.1| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
           tuberculosis T92]
 gi|289754713|ref|ZP_06514091.1| holliday junction resolvase [Mycobacterium tuberculosis EAS054]
 gi|289758725|ref|ZP_06518103.1| holliday junction resolvase [Mycobacterium tuberculosis T85]
 gi|289762767|ref|ZP_06522145.1| crossover junction endodeoxyribonuclease ruvC (holliday junction
           nuclease) [Mycobacterium tuberculosis GM 1503]
 gi|294994297|ref|ZP_06799988.1| Holliday junction resolvase [Mycobacterium tuberculosis 210]
 gi|297635204|ref|ZP_06952984.1| Holliday junction resolvase [Mycobacterium tuberculosis KZN 4207]
 gi|297732197|ref|ZP_06961315.1| Holliday junction resolvase [Mycobacterium tuberculosis KZN R506]
 gi|298526069|ref|ZP_07013478.1| holliday junction nuclease [Mycobacterium tuberculosis 94_M4241A]
 gi|306794077|ref|ZP_07432379.1| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
           tuberculosis SUMu005]
 gi|306798491|ref|ZP_07436793.1| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
           tuberculosis SUMu006]
 gi|306804354|ref|ZP_07441022.1| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
           tuberculosis SUMu008]
 gi|306972983|ref|ZP_07485644.1| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
           tuberculosis SUMu010]
 gi|307080693|ref|ZP_07489863.1| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
           tuberculosis SUMu011]
 gi|313659532|ref|ZP_07816412.1| Holliday junction resolvase [Mycobacterium tuberculosis KZN V2475]
 gi|54039581|sp|P66761|RUVC_MYCBO RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|54042208|sp|P66760|RUVC_MYCTU RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|166233269|sp|A1KLU2|RUVC_MYCBP RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|166233271|sp|A5U5U4|RUVC_MYCTA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|254767479|sp|C1AF63|RUVC_MYCBT RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|1478218|emb|CAB01281.1| PROBABLE CROSSOVER JUNCTION ENDODEOXYRIBONUCLEASE RUVC (HOLLIDAY
           JUNCTION NUCLEASE) (HOLLIDAY JUNCTION RESOLVASE)
           [Mycobacterium tuberculosis H37Rv]
 gi|13882418|gb|AAK46985.1| Holliday junction nuclease [Mycobacterium tuberculosis CDC1551]
 gi|31619372|emb|CAD94810.1| PROBABLE CROSSOVER JUNCTION ENDODEOXYRIBONUCLEASE RUVC (HOLLIDAY
           JUNCTION NUCLEASE) (HOLLIDAY JUNCTION RESOLVASE)
           [Mycobacterium bovis AF2122/97]
 gi|121494127|emb|CAL72605.1| Probable crossover junction endodeoxyribonuclease ruvC
           [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|124601771|gb|EAY60781.1| crossover junction endodeoxyribonuclease ruvC (holliday junction
           nuclease) [Mycobacterium tuberculosis C]
 gi|134150776|gb|EBA42821.1| crossover junction endodeoxyribonuclease ruvC (holliday junction
           nuclease) [Mycobacterium tuberculosis str. Haarlem]
 gi|148506585|gb|ABQ74394.1| Holliday junction resolvase [Mycobacterium tuberculosis H37Ra]
 gi|148722316|gb|ABR06941.1| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
           tuberculosis F11]
 gi|224774086|dbj|BAH26892.1| Holliday junction resolvase [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|253319827|gb|ACT24430.1| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
           tuberculosis KZN 1435]
 gi|289417052|gb|EFD14292.1| crossover junction endodeoxyribonuclease RuvC [Mycobacterium
           tuberculosis T46]
 gi|289421202|gb|EFD18403.1| crossover junction endodeoxyribonuclease RuvC [Mycobacterium
           tuberculosis CPHL_A]
 gi|289438249|gb|EFD20742.1| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
           tuberculosis KZN 605]
 gi|289539735|gb|EFD44313.1| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
           tuberculosis K85]
 gi|289544519|gb|EFD48167.1| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
           tuberculosis T17]
 gi|289686915|gb|EFD54403.1| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
           tuberculosis 02_1987]
 gi|289691805|gb|EFD59234.1| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
           tuberculosis T92]
 gi|289695300|gb|EFD62729.1| holliday junction resolvase [Mycobacterium tuberculosis EAS054]
 gi|289710273|gb|EFD74289.1| crossover junction endodeoxyribonuclease ruvC (holliday junction
           nuclease) [Mycobacterium tuberculosis GM 1503]
 gi|289714289|gb|EFD78301.1| holliday junction resolvase [Mycobacterium tuberculosis T85]
 gi|298495863|gb|EFI31157.1| holliday junction nuclease [Mycobacterium tuberculosis 94_M4241A]
 gi|308337557|gb|EFP26408.1| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
           tuberculosis SUMu005]
 gi|308341224|gb|EFP30075.1| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
           tuberculosis SUMu006]
 gi|308349031|gb|EFP37882.1| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
           tuberculosis SUMu008]
 gi|308357599|gb|EFP46450.1| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
           tuberculosis SUMu010]
 gi|308361541|gb|EFP50392.1| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
           tuberculosis SUMu011]
 gi|323718790|gb|EGB27947.1| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
           tuberculosis CDC1551A]
 gi|326904207|gb|EGE51140.1| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
           tuberculosis W-148]
 gi|328458094|gb|AEB03517.1| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
           tuberculosis KZN 4207]
          Length = 188

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 83/162 (51%), Gaps = 10/162 (6%)

Query: 5   IRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G  +++   G  L  +     V  VR      L Q    ++D +++W
Sbjct: 1   MRVMGVDPGLTRCGLSLIESGRGRQLTALD----VDVVRTPSDAALAQRLLAISDAVEHW 56

Query: 64  ----RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVG 119
                PE  A+E+VF   +    +   QA  +  L+ A   + V  + P+ +K AV G G
Sbjct: 57  LDTHHPEVVAIERVFSQLNVTTVMGTAQAGGVIALAAAKRGVDVHFHTPSEVKAAVTGNG 116

Query: 120 HGDKKQIH-MMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
             DK Q+  M+ K+L  ++     DAADALA+A+CH + A +
Sbjct: 117 SADKAQVTAMVTKILALQAKPTPADAADALALAICHCWRAPT 158


>gi|257055536|ref|YP_003133368.1| Holliday junction resolvase [Saccharomonospora viridis DSM 43017]
 gi|256585408|gb|ACU96541.1| Holliday junction endonuclease RuvC [Saccharomonospora viridis DSM
           43017]
          Length = 196

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 68/131 (51%), Gaps = 1/131 (0%)

Query: 5   IRIIGIDPGLRR-TGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R     +    G ++  V+   + + V   +A RL ++ + + + +  +
Sbjct: 1   MRVLGVDPGLTRCGLGVVDGGVGRSITGVAVDVVRTPVEAEVAQRLLRIGDAVEEWLDTY 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RP+  AVE+VF   +    +   QA  +  L  A   +PV+ + P+ +K AV G G  DK
Sbjct: 61  RPDVVAVERVFSQHNVRTVMGTAQAGGVVALCAARRGLPVAFHTPSEVKAAVTGSGRADK 120

Query: 124 KQIHMMLKMLM 134
            Q+  M+  L+
Sbjct: 121 AQVTAMVTRLL 131


>gi|206895287|ref|YP_002247235.1| crossover junction endodeoxyribonuclease RuvC (Hollidayjunction
           nuclease ruvC) (Holliday junction resolvase ruvC)
           [Coprothermobacter proteolyticus DSM 5265]
 gi|206737904|gb|ACI16982.1| crossover junction endodeoxyribonuclease RuvC (Hollidayjunction
           nuclease ruvC) (Holliday junction resolvase ruvC)
           [Coprothermobacter proteolyticus DSM 5265]
          Length = 159

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 72/159 (45%), Gaps = 12/159 (7%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEG-LTDVIKNWRP 65
           + G+DPG  R G  ++D    N   V    +   + + L +   + Y G L DV     P
Sbjct: 3   VFGVDPGSTRVGLALLDDESRNWLHVQCLELTG-LPEHLRYTTIERYVGALCDVFN---P 58

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
           EE A+E++   K+    L++ + R +  L      I V EY P  +K    G GH +K  
Sbjct: 59  EEMAIEKLIWGKNRNNLLQISECRGVVKLVAYKRAIKVFEYFPTEVKSFTTGYGHEEKAG 118

Query: 126 IHMMLKMLMPESFFK----GKDAADALAIAVCHAYHANS 160
           I   ++ L  E+ F       DA+DA+AIA  H    N+
Sbjct: 119 I---VRTLQAETGFDLLPLFDDASDAMAIAWIHVLMRNN 154


>gi|269126343|ref|YP_003299713.1| crossover junction endodeoxyribonuclease RuvC [Thermomonospora
           curvata DSM 43183]
 gi|268311301|gb|ACY97675.1| crossover junction endodeoxyribonuclease RuvC [Thermomonospora
           curvata DSM 43183]
          Length = 176

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 46/131 (35%), Positives = 70/131 (53%), Gaps = 1/131 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G G+VD A G  L  V    I +     +A RL  +  G+  ++   
Sbjct: 1   MRVLGVDPGLTRCGVGVVDGAPGKPLHLVHVEVIRTSPDADIAERLLGIERGIEALLDEH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P+  AVE+VF   +    +   QA AIAI++ A   +PV+ + P+  K AV G G   K
Sbjct: 61  APDAVAVERVFAQHNVSTVMGTAQAGAIAIVAAARRGLPVALHTPSEAKAAVTGNGSAGK 120

Query: 124 KQIHMMLKMLM 134
            Q+ MM+  L+
Sbjct: 121 AQVTMMVTRLL 131


>gi|282897446|ref|ZP_06305448.1| Crossover junction endodeoxyribonuclease RuvC [Raphidiopsis brookii
           D9]
 gi|281198098|gb|EFA72992.1| Crossover junction endodeoxyribonuclease RuvC [Raphidiopsis brookii
           D9]
          Length = 192

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 66/129 (51%), Gaps = 8/129 (6%)

Query: 6   RIIGIDPGLRRTGWGIVDV-------AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTD 58
           +I+G+DPGL   G+G + +       +   +  V  G I +     +  RL  L++ L  
Sbjct: 30  QILGLDPGLAIVGFGAISLEQRSAKLSDTTITMVDFGVIRTPSDMEITQRLSTLFDDLHT 89

Query: 59  VIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGV 118
           ++   +P+  A+E++F  + A  T+ + QAR + +L     R+P  E+AP  IK+A+   
Sbjct: 90  LLDELQPDVVAIERLFFYRMA-NTILVAQARGVIMLVLGQRRLPYLEFAPPQIKQALTSY 148

Query: 119 GHGDKKQIH 127
           G  +K ++ 
Sbjct: 149 GKAEKIEVQ 157


>gi|260654960|ref|ZP_05860448.1| crossover junction endodeoxyribonuclease RuvC [Jonquetella anthropi
           E3_33 E1]
 gi|260630275|gb|EEX48469.1| crossover junction endodeoxyribonuclease RuvC [Jonquetella anthropi
           E3_33 E1]
          Length = 152

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 71/136 (52%), Gaps = 1/136 (0%)

Query: 18  GWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNK 77
           G+G V   G  L   S G I +   ++L  RL  LY+ L + I+   P   AVE+++   
Sbjct: 2   GYGAVVQRGGELRAESCGCIETKPDRTLPERLKILYDQLREQIERCSPHFMAVERLYFGH 61

Query: 78  DAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMP-E 136
           +      + QAR + +L  A   + V E  P+  K  V G G+ +K+Q+  M+++L+  +
Sbjct: 62  NRTTAEAVWQARGVVLLLAAQFGLDVVEPKPSEAKLTVCGDGNAEKRQVQEMVRILLGLK 121

Query: 137 SFFKGKDAADALAIAV 152
              +  DAADALAI++
Sbjct: 122 EIPRPDDAADALAISM 137


>gi|291456788|ref|ZP_06596178.1| crossover junction endodeoxyribonuclease RuvC [Bifidobacterium
           breve DSM 20213]
 gi|291382065|gb|EFE89583.1| crossover junction endodeoxyribonuclease RuvC [Bifidobacterium
           breve DSM 20213]
          Length = 194

 Score = 60.5 bits (145), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 70/130 (53%), Gaps = 3/130 (2%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDN--LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           I+G+DPGL R G G+++ AG++  L F+    + S    +   RL  +Y GL++ +  + 
Sbjct: 3   ILGVDPGLTRCGVGVIE-AGEHRRLSFIHVDVVRSSPDITQDLRLLAIYNGLSEKMDRFA 61

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  ++E+VF   +    L   QA  +A+L+ A   IPV+ + P   K A+ G G   K 
Sbjct: 62  PDAVSIERVFAQSNRNTVLGTAQAAGLAMLAAAQRNIPVALHTPTEAKLAITGNGQAQKI 121

Query: 125 QIHMMLKMLM 134
           Q+  M+  ++
Sbjct: 122 QVERMVTRIL 131


>gi|296454196|ref|YP_003661339.1| crossover junction endodeoxyribonuclease RuvC [Bifidobacterium
           longum subsp. longum JDM301]
 gi|312132688|ref|YP_004000027.1| ruvc [Bifidobacterium longum subsp. longum BBMN68]
 gi|317483237|ref|ZP_07942232.1| crossover junction endodeoxyribonuclease RuvC [Bifidobacterium sp.
           12_1_47BFAA]
 gi|322689209|ref|YP_004208943.1| holliday junction resolvase [Bifidobacterium longum subsp. infantis
           157F]
 gi|322691275|ref|YP_004220845.1| holliday junction resolvase [Bifidobacterium longum subsp. longum
           JCM 1217]
 gi|296183627|gb|ADH00509.1| crossover junction endodeoxyribonuclease RuvC [Bifidobacterium
           longum subsp. longum JDM301]
 gi|311773646|gb|ADQ03134.1| RuvC [Bifidobacterium longum subsp. longum BBMN68]
 gi|316915306|gb|EFV36733.1| crossover junction endodeoxyribonuclease RuvC [Bifidobacterium sp.
           12_1_47BFAA]
 gi|320456131|dbj|BAJ66753.1| holliday junction resolvase [Bifidobacterium longum subsp. longum
           JCM 1217]
 gi|320460545|dbj|BAJ71165.1| holliday junction resolvase [Bifidobacterium longum subsp. infantis
           157F]
          Length = 194

 Score = 60.5 bits (145), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 70/130 (53%), Gaps = 3/130 (2%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDN--LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           I+G+DPGL R G G+++ AG++  L F+    + S    +   RL  +Y GL++ +  + 
Sbjct: 3   ILGVDPGLTRCGVGVIE-AGEHRRLSFIHVDVVRSSPDITQDLRLLAIYNGLSEKMDRFA 61

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  ++E+VF   +    L   QA  +A+L+ A   IPV+ + P   K A+ G G   K 
Sbjct: 62  PDAVSIERVFAQSNRNTVLGTAQAAGLAMLAAAQRNIPVALHTPTEAKLAITGNGQAQKI 121

Query: 125 QIHMMLKMLM 134
           Q+  M+  ++
Sbjct: 122 QVERMVTRIL 131


>gi|23335125|ref|ZP_00120363.1| COG0817: Holliday junction resolvasome, endonuclease subunit
           [Bifidobacterium longum DJO10A]
 gi|23465305|ref|NP_695908.1| Holliday junction resolvase [Bifidobacterium longum NCC2705]
 gi|189439314|ref|YP_001954395.1| Holliday junction resolvase [Bifidobacterium longum DJO10A]
 gi|227547259|ref|ZP_03977308.1| crossover junction endodeoxyribonuclease [Bifidobacterium longum
           subsp. infantis ATCC 55813]
 gi|239621473|ref|ZP_04664504.1| holliday junction resolvase [Bifidobacterium longum subsp. infantis
           CCUG 52486]
 gi|44888507|sp|Q8G6B9|RUVC_BIFLO RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|238692056|sp|B3DRX8|RUVC_BIFLD RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|23325943|gb|AAN24544.1| crossover junction endodeoxyribonuclease RuvC [Bifidobacterium
           longum NCC2705]
 gi|189427749|gb|ACD97897.1| Holliday junction resolvasome endonuclease subunit [Bifidobacterium
           longum DJO10A]
 gi|227212218|gb|EEI80114.1| crossover junction endodeoxyribonuclease [Bifidobacterium longum
           subsp. infantis ATCC 55813]
 gi|239515934|gb|EEQ55801.1| holliday junction resolvase [Bifidobacterium longum subsp. infantis
           CCUG 52486]
          Length = 194

 Score = 60.5 bits (145), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 70/130 (53%), Gaps = 3/130 (2%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDN--LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           I+G+DPGL R G G+++ AG++  L F+    + S    +   RL  +Y GL++ +  + 
Sbjct: 3   ILGVDPGLTRCGVGVIE-AGEHRRLSFIHVDVVRSSPDITQDLRLLAIYNGLSEKMDRFA 61

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  ++E+VF   +    L   QA  +A+L+ A   IPV+ + P   K A+ G G   K 
Sbjct: 62  PDAVSIERVFAQSNRNTVLGTAQAAGLAMLAAAQRNIPVALHTPTEAKLAITGNGQAQKI 121

Query: 125 QIHMMLKMLM 134
           Q+  M+  ++
Sbjct: 122 QVERMVTRIL 131


>gi|145224408|ref|YP_001135086.1| Holliday junction resolvase [Mycobacterium gilvum PYR-GCK]
 gi|145216894|gb|ABP46298.1| Holliday junction endonuclease RuvC [Mycobacterium gilvum PYR-GCK]
          Length = 220

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 82/156 (52%), Gaps = 2/156 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G  +++   G  +  +    + +     LA RL  +   +   +   
Sbjct: 29  VRVMGVDPGLTRCGLSVIESGRGRQVIALDVDVVRTPSDHPLAHRLLAISNAVEHWLDTH 88

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RP+  A+E+VF N++A   +   QA  +  L+ A   I V  + P+ +K AV G G  DK
Sbjct: 89  RPDVIAIERVFSNQNANTAMGTAQAGGVVALAAARRDIDVHFHTPSEVKAAVTGNGRADK 148

Query: 124 KQI-HMMLKMLMPESFFKGKDAADALAIAVCHAYHA 158
            Q+  M+ ++L  +      DAADALA+A+CH + A
Sbjct: 149 AQVTEMVTRILALQQKPTPADAADALALAICHCWRA 184


>gi|269103019|ref|ZP_06155716.1| crossover junction endodeoxyribonuclease RuvC [Photobacterium
           damselae subsp. damselae CIP 102761]
 gi|268162917|gb|EEZ41413.1| crossover junction endodeoxyribonuclease RuvC [Photobacterium
           damselae subsp. damselae CIP 102761]
          Length = 103

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/95 (48%), Positives = 62/95 (65%), Gaps = 3/95 (3%)

Query: 75  VNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI-HMMLKML 133
           + K+A + LKLGQAR  AI++   A +PV+EYA   IK+AV+G+G  DK Q+ HM+  ML
Sbjct: 1   MGKNASSALKLGQARGSAIVAAVNADLPVNEYAARLIKQAVVGIGSADKLQVQHMVCSML 60

Query: 134 MPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
             E   +  DAADALA+A+CHA H N     +A Q
Sbjct: 61  KLEGKPQ-ADAADALAVAICHA-HTNRTLVAMAGQ 93


>gi|296270038|ref|YP_003652670.1| crossover junction endodeoxyribonuclease RuvC [Thermobispora
           bispora DSM 43833]
 gi|296092825|gb|ADG88777.1| crossover junction endodeoxyribonuclease RuvC [Thermobispora
           bispora DSM 43833]
          Length = 193

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 86/159 (54%), Gaps = 2/159 (1%)

Query: 6   RIIGIDPGLRRTGWGIVD-VAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           R++G+DPGL R G G V+   G  L  V++G + +     +  RL  +   +   +   R
Sbjct: 7   RVLGVDPGLTRCGLGAVEGRPGAPLRLVAAGVVRTSADDDIGTRLLAIEREIERWLDEVR 66

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P   AVE+VF   +    +   QA AIAI+  A   +PV+ + P+ +K A+ G G   K+
Sbjct: 67  PSTVAVERVFAQHNVRTVMGTAQAAAIAIVCAARRGLPVALHTPSEVKAAITGNGDAGKR 126

Query: 125 QIH-MMLKMLMPESFFKGKDAADALAIAVCHAYHANSGY 162
           Q+  M+ ++L  ++  K  DAADALA+A+CH +   + +
Sbjct: 127 QVGAMVTRLLRLDAMPKPADAADALALAICHVWRGGAQH 165


>gi|315444740|ref|YP_004077619.1| Holliday junction endonuclease RuvC [Mycobacterium sp. Spyr1]
 gi|315263043|gb|ADT99784.1| Holliday junction endonuclease RuvC [Mycobacterium sp. Spyr1]
          Length = 192

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 82/156 (52%), Gaps = 2/156 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G  +++   G  +  +    + +     LA RL  +   +   +   
Sbjct: 1   MRVMGVDPGLTRCGLSVIESGRGRQVIALDVDVVRTPSDHPLAHRLLAISNAVEHWLDTH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RP+  A+E+VF N++A   +   QA  +  L+ A   I V  + P+ +K AV G G  DK
Sbjct: 61  RPDVIAIERVFSNQNANTAMGTAQAGGVVALAAARRDIDVHFHTPSEVKAAVTGNGRADK 120

Query: 124 KQI-HMMLKMLMPESFFKGKDAADALAIAVCHAYHA 158
            Q+  M+ ++L  +      DAADALA+A+CH + A
Sbjct: 121 AQVTEMVTRILALQQKPTPADAADALALAICHCWRA 156


>gi|308177528|ref|YP_003916934.1| crossover junction endodeoxyribonuclease RuvC [Arthrobacter
           arilaitensis Re117]
 gi|307744991|emb|CBT75963.1| crossover junction endodeoxyribonuclease RuvC [Arthrobacter
           arilaitensis Re117]
          Length = 199

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 64/128 (50%), Gaps = 1/128 (0%)

Query: 4   SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQS-LAFRLCQLYEGLTDVIKN 62
           ++R++G+DPGL R G  +VDVA +    +   T+      + L  RL ++ + +   +  
Sbjct: 2   ALRVVGVDPGLTRCGLAVVDVAANRQVSLVDVTVAGTPPGTPLDARLLKIADAIDAWLDL 61

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
            +P+  A+E+VF + +    +   Q   + I + A   IPV+ + P  +K AV G G   
Sbjct: 62  HKPDVLALERVFASANVSTVIGTAQVTGVVITAAARRGIPVAMHTPTEVKAAVTGSGQAT 121

Query: 123 KKQIHMML 130
           K  I  M+
Sbjct: 122 KVAIGKMV 129


>gi|326382126|ref|ZP_08203818.1| Holliday junction resolvase [Gordonia neofelifaecis NRRL B-59395]
 gi|326198856|gb|EGD56038.1| Holliday junction resolvase [Gordonia neofelifaecis NRRL B-59395]
          Length = 193

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/151 (33%), Positives = 80/151 (52%), Gaps = 2/151 (1%)

Query: 8   IGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           +G+DPGL R G  +V+  AG  +  +    + +     LA RL  ++ G    +    P+
Sbjct: 1   MGVDPGLTRCGIALVESGAGRKVTALDVDVVRTPADMDLAERLLAIHVGAVHWLDTHGPD 60

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+E+VF  +     +   QA  +  L+ A   IPV  + P+ +K AV G G  DK Q+
Sbjct: 61  VVAIERVFAQRQVSTAMGTAQAAGVIALAAAQREIPVRFHTPSEVKAAVTGSGRADKAQV 120

Query: 127 HMML-KMLMPESFFKGKDAADALAIAVCHAY 156
            MM+ ++L  ++  K  DAADALA+A+CH +
Sbjct: 121 TMMVTRILGMQTPPKPADAADALALAICHCW 151


>gi|183601645|ref|ZP_02963015.1| Holliday junction resolvase [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|219683821|ref|YP_002470204.1| Holliday junction resolvase [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|241190857|ref|YP_002968251.1| Holliday junction resolvase [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|241196263|ref|YP_002969818.1| Holliday junction resolvase [Bifidobacterium animalis subsp. lactis
           DSM 10140]
 gi|254767458|sp|B8DUE9|RUVC_BIFA0 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|183219251|gb|EDT89892.1| Holliday junction resolvase [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|219621471|gb|ACL29628.1| crossover junction endodeoxyribonuclease RuvC [Bifidobacterium
           animalis subsp. lactis AD011]
 gi|240249249|gb|ACS46189.1| Holliday junction resolvase [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|240250817|gb|ACS47756.1| Holliday junction resolvase [Bifidobacterium animalis subsp. lactis
           DSM 10140]
 gi|289178596|gb|ADC85842.1| RuvC [Bifidobacterium animalis subsp. lactis BB-12]
 gi|295793846|gb|ADG33381.1| Holliday junction resolvase [Bifidobacterium animalis subsp. lactis
           V9]
          Length = 193

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 70/129 (54%), Gaps = 1/129 (0%)

Query: 7   IIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           ++G+DPGL R G G+++  A   L F+    + S   +S   RL ++Y+GL   +  + P
Sbjct: 3   VLGVDPGLTRCGVGVIEAGAYRRLSFIHVDVVRSDPHESQDLRLLKIYDGLCAKMDEFIP 62

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
           +  ++E+VF  ++    L   QA  +A+L+ A   IPV+ + P   K A+ G G  +K Q
Sbjct: 63  DTVSIERVFAQENRNTVLGTAQAAGMAMLAAAQRGIPVALHTPTESKMAITGNGKAEKIQ 122

Query: 126 IHMMLKMLM 134
           +  M+  ++
Sbjct: 123 MERMVARIL 131


>gi|319947800|ref|ZP_08021994.1| Holliday junction resolvase [Dietzia cinnamea P4]
 gi|319438524|gb|EFV93450.1| Holliday junction resolvase [Dietzia cinnamea P4]
          Length = 219

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 86/156 (55%), Gaps = 2/156 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G  +++ A G  +  +    + +   + L  RL  ++    + ++  
Sbjct: 1   MRVMGVDPGLTRCGLALIETAPGRAVTALDVDVVRTTSDEPLERRLRAVHSVADEWMEIH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RP+  A+E+VF        +   QA  +  L+ A   IPV+ + P+ +K A+ G G  DK
Sbjct: 61  RPDVVAIERVFAQNQVSTAMGTAQAAGVVALAAAYREIPVAFHTPSEVKAAITGSGRADK 120

Query: 124 KQIHMML-KMLMPESFFKGKDAADALAIAVCHAYHA 158
           KQ+ +M+ ++L  +      DAADALA+AVCH++ A
Sbjct: 121 KQMTLMITRILGLQKPPSPADAADALALAVCHSWRA 156


>gi|213692038|ref|YP_002322624.1| crossover junction endodeoxyribonuclease RuvC [Bifidobacterium
           longum subsp. infantis ATCC 15697]
 gi|254767459|sp|B7GR16|RUVC_BIFLI RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|213523499|gb|ACJ52246.1| crossover junction endodeoxyribonuclease RuvC [Bifidobacterium
           longum subsp. infantis ATCC 15697]
 gi|320458150|dbj|BAJ68771.1| holliday junction resolvase [Bifidobacterium longum subsp. infantis
           ATCC 15697]
          Length = 194

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 70/130 (53%), Gaps = 3/130 (2%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDN--LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           I+G+DPGL R G G+++ AG++  L F+    + S    +   RL  +Y GL++ +  + 
Sbjct: 3   ILGVDPGLTRCGVGVIE-AGEHRRLSFIHVDVVRSSPDITQDLRLLAIYNGLSEKMDRFA 61

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  ++E+VF   +    L   QA  +A+L+ A   IPV+ + P   K A+ G G   K 
Sbjct: 62  PDAVSIERVFAQSNRNTVLGTAQAAGLAMLAAAQRGIPVALHTPTEAKLAITGNGQAQKV 121

Query: 125 QIHMMLKMLM 134
           Q+  M+  ++
Sbjct: 122 QVERMVTRVL 131


>gi|311064397|ref|YP_003971122.1| crossover junction endodeoxyribonuclease RuvC [Bifidobacterium
           bifidum PRL2010]
 gi|310866716|gb|ADP36085.1| RuvC Crossover junction endodeoxyribonuclease [Bifidobacterium
           bifidum PRL2010]
          Length = 132

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/126 (34%), Positives = 66/126 (52%), Gaps = 3/126 (2%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDN--LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           I+G+DPGL R G G+++ AG N  L F+    + S    S   RL  +Y GL   +  + 
Sbjct: 3   ILGVDPGLTRCGVGVIE-AGANRRLSFIHVDVVRSDPHTSQDLRLLTIYNGLCSKMDRFI 61

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  ++E+VF   +    L   QA  +A+L+ A   IPV+ + P   K A+ G G  +K 
Sbjct: 62  PDAVSIERVFAQSNRNTVLGTAQAAGMAMLAAAQRGIPVALHTPTEAKLAITGNGKAEKI 121

Query: 125 QIHMML 130
           QI  M+
Sbjct: 122 QIERMV 127


>gi|56750749|ref|YP_171450.1| Holliday junction resolvase [Synechococcus elongatus PCC 6301]
 gi|81299609|ref|YP_399817.1| Holliday junction resolvase [Synechococcus elongatus PCC 7942]
 gi|81596412|sp|Q5N440|RUVC_SYNP6 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|123557188|sp|Q31Q39|RUVC_SYNE7 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|56685708|dbj|BAD78930.1| holliday junction resolvase RuvC [Synechococcus elongatus PCC 6301]
 gi|81168490|gb|ABB56830.1| Holliday junction endonuclease RuvC [Synechococcus elongatus PCC
           7942]
          Length = 161

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 63/121 (52%), Gaps = 4/121 (3%)

Query: 6   RIIGIDPGLRRTGWGIV---DVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
           RI+G+DPGL   G+G +   D    +L  +  G I +     +  RL  +Y+ L  +I  
Sbjct: 4   RILGLDPGLAIVGFGALLCPDSRQGSLELLDFGVISTPAGAEIGDRLETIYQDLHQLIDL 63

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
            +P+  AVE++F  +    T+ + QAR + +L     R+P  E+ P  +K+A+ G G+  
Sbjct: 64  VQPDAVAVEKLFFYRMG-NTIAVAQARGVLMLVLRQRRLPYCEFTPAQVKQALTGYGNAP 122

Query: 123 K 123
           K
Sbjct: 123 K 123


>gi|240173172|ref|ZP_04751830.1| Holliday junction resolvase [Mycobacterium kansasii ATCC 12478]
          Length = 181

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/153 (31%), Positives = 80/153 (52%), Gaps = 2/153 (1%)

Query: 8   IGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           +G+DPGL R G  +V+   G +L  +    + +    +L+ RL  + E +   +   RP+
Sbjct: 1   MGVDPGLTRCGLSLVESGRGRDLVALDVDVVRTPSDTALSKRLLAINEAVEHWLDTHRPD 60

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+E+VF   +    +   QA  +  L+ A   I V  + P+ +K AV G G  DK Q+
Sbjct: 61  VLAIERVFSQLNVTTVMGTAQAGGVIALAAAKRDIDVHFHTPSEVKAAVTGNGAADKAQV 120

Query: 127 H-MMLKMLMPESFFKGKDAADALAIAVCHAYHA 158
             M+ ++L  ++     DAADALA+A+CH + A
Sbjct: 121 TAMVTRILALQAKPTPADAADALALAICHCWRA 153


>gi|298252761|ref|ZP_06976555.1| Holliday junction resolvasome, endonuclease subunit [Gardnerella
           vaginalis 5-1]
 gi|297533125|gb|EFH72009.1| Holliday junction resolvasome, endonuclease subunit [Gardnerella
           vaginalis 5-1]
          Length = 161

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 48/88 (54%)

Query: 47  FRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEY 106
            RL ++Y GL + I+ + P+  ++E+VF  ++    L   Q   IA+L+ A   IPV+ +
Sbjct: 12  LRLLKIYNGLVEKIERFSPDTVSIERVFAQENRNTVLGTAQVAGIAMLAAAQRNIPVALH 71

Query: 107 APNTIKKAVIGVGHGDKKQIHMMLKMLM 134
            P  +K AV G G   K Q+  M+  L+
Sbjct: 72  TPTEVKLAVAGNGKAQKPQVERMVARLL 99


>gi|229817633|ref|ZP_04447915.1| hypothetical protein BIFANG_02903 [Bifidobacterium angulatum DSM
           20098]
 gi|229785422|gb|EEP21536.1| hypothetical protein BIFANG_02903 [Bifidobacterium angulatum DSM
           20098]
          Length = 193

 Score = 58.2 bits (139), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 52/151 (34%), Positives = 81/151 (53%), Gaps = 2/151 (1%)

Query: 7   IIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           I+G+DPGL R G G+++  A   L F+    + S    S   RL  +Y GL + +  + P
Sbjct: 3   ILGVDPGLTRCGVGVIEAGAYRRLSFIHVDVVRSAPDVSQDLRLLAIYNGLVEKMDRFVP 62

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
           +  ++E+VF   +    L   QA  +A+L+ A   IPV+ + P   K A+ G G   K Q
Sbjct: 63  DVVSIERVFAQSNHNTVLGTAQAAGLAMLAAAQRGIPVALHTPTEAKLAITGDGRAQKIQ 122

Query: 126 IH-MMLKMLMPESFFKGKDAADALAIAVCHA 155
           +  M+ ++L   +     DAADALA+A+CHA
Sbjct: 123 VERMVTRILNLNTMPTPADAADALALAICHA 153


>gi|261337767|ref|ZP_05965651.1| crossover junction endodeoxyribonuclease RuvC [Bifidobacterium
           gallicum DSM 20093]
 gi|270277220|gb|EFA23074.1| crossover junction endodeoxyribonuclease RuvC [Bifidobacterium
           gallicum DSM 20093]
          Length = 194

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 55/152 (36%), Positives = 82/152 (53%), Gaps = 4/152 (2%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDN--LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           I+G+DPGL R G G+++ AG N  L F+    + S        RL  +Y GL   +  + 
Sbjct: 3   ILGVDPGLTRCGVGVIE-AGVNRRLSFMHVDVVRSDSHMPQDLRLLTVYNGLCAKLDEFI 61

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  ++E+VF   +    L   QA  +A+L  A   IPV+ + P+  K A+ G G  +K 
Sbjct: 62  PDVVSIERVFAQDNRSTVLGTAQAAGLAMLGAAQRGIPVALHTPSESKLAITGNGRAEKI 121

Query: 125 QIHMML-KMLMPESFFKGKDAADALAIAVCHA 155
           Q+  M+ ++L      K  DAADALAIA+CHA
Sbjct: 122 QMERMVARILGLNQLPKPADAADALAIAICHA 153


>gi|308232187|ref|ZP_07415205.2| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
           tuberculosis SUMu001]
 gi|308369765|ref|ZP_07418969.2| crossover junction endodeoxyribonuclease RuvC [Mycobacterium
           tuberculosis SUMu002]
 gi|308214723|gb|EFO74122.1| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
           tuberculosis SUMu001]
 gi|308326463|gb|EFP15314.1| crossover junction endodeoxyribonuclease RuvC [Mycobacterium
           tuberculosis SUMu002]
          Length = 186

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 81/160 (50%), Gaps = 10/160 (6%)

Query: 7   IIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW-- 63
           ++G+DPGL R G  +++   G  L  +     V  VR      L Q    ++D +++W  
Sbjct: 1   MMGVDPGLTRCGLSLIESGRGRQLTALD----VDVVRTPSDAALAQRLLAISDAVEHWLD 56

Query: 64  --RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
              PE  A+E+VF   +    +   QA  +  L+ A   + V  + P+ +K AV G G  
Sbjct: 57  THHPEVVAIERVFSQLNVTTVMGTAQAGGVIALAAAKRGVDVHFHTPSEVKAAVTGNGSA 116

Query: 122 DKKQIH-MMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           DK Q+  M+ K+L  ++     DAADALA+A+CH + A +
Sbjct: 117 DKAQVTAMVTKILALQAKPTPADAADALALAICHCWRAPT 156


>gi|50842638|ref|YP_055865.1| Holliday junction resolvase [Propionibacterium acnes KPA171202]
 gi|81611699|sp|Q6A8K9|RUVC_PROAC RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|50840240|gb|AAT82907.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes KPA171202]
          Length = 196

 Score = 57.8 bits (138), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 55/161 (34%), Positives = 90/161 (55%), Gaps = 10/161 (6%)

Query: 2   RKSIRIIGIDPGLRR-TGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           R+  R++G+DPGL R     +    G +L  ++ G I +      A RL ++++GL +  
Sbjct: 10  RRVTRVMGVDPGLTRCGVGVVEGGLGSSLKLIAVGVIRTPADLDHAHRLLRIHDGLEEWR 69

Query: 61  KNWRPEEAAVEQVFV--NKDAVATLKLGQARAIAILSPALAR--IPVSEYAPNTIKKAVI 116
            + RP+  AVE+VF   N++ VA    G A+A  I     AR  +PV+ + P+ +K A+ 
Sbjct: 70  DHTRPDAIAVEKVFAQHNRNTVA----GTAQAAGIAMMIAARHGLPVALHTPSEVKAAIS 125

Query: 117 GVGHGDKKQIHMML-KMLMPESFFKGKDAADALAIAVCHAY 156
           G G  DK Q+  M+ ++L   +  K  DAADA+A+A+CH +
Sbjct: 126 GSGRADKAQVGFMVARVLRLSAPPKPADAADAVALAICHLW 166


>gi|308371067|ref|ZP_07423718.2| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
           tuberculosis SUMu003]
 gi|308372345|ref|ZP_07428318.2| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
           tuberculosis SUMu004]
 gi|308375541|ref|ZP_07444274.2| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
           tuberculosis SUMu007]
 gi|308378400|ref|ZP_07482469.2| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
           tuberculosis SUMu009]
 gi|308405830|ref|ZP_07494395.2| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
           tuberculosis SUMu012]
 gi|308329915|gb|EFP18766.1| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
           tuberculosis SUMu003]
 gi|308333530|gb|EFP22381.1| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
           tuberculosis SUMu004]
 gi|308346002|gb|EFP34853.1| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
           tuberculosis SUMu007]
 gi|308352725|gb|EFP41576.1| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
           tuberculosis SUMu009]
 gi|308365152|gb|EFP54003.1| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
           tuberculosis SUMu012]
          Length = 185

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 80/159 (50%), Gaps = 10/159 (6%)

Query: 8   IGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW--- 63
           +G+DPGL R G  +++   G  L  +     V  VR      L Q    ++D +++W   
Sbjct: 1   MGVDPGLTRCGLSLIESGRGRQLTALD----VDVVRTPSDAALAQRLLAISDAVEHWLDT 56

Query: 64  -RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
             PE  A+E+VF   +    +   QA  +  L+ A   + V  + P+ +K AV G G  D
Sbjct: 57  HHPEVVAIERVFSQLNVTTVMGTAQAGGVIALAAAKRGVDVHFHTPSEVKAAVTGNGSAD 116

Query: 123 KKQIH-MMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           K Q+  M+ K+L  ++     DAADALA+A+CH + A +
Sbjct: 117 KAQVTAMVTKILALQAKPTPADAADALALAICHCWRAPT 155


>gi|288574887|ref|ZP_06393244.1| Crossover junction endodeoxyribonuclease [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288570628|gb|EFC92185.1| Crossover junction endodeoxyribonuclease [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 151

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 59/117 (50%)

Query: 18  GWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNK 77
           G+G+V+  G      S G + +    S+  RL +LY GL + I    P   AVE+++  +
Sbjct: 2   GFGVVEKIGSKYRACSFGCLETPSDMSVPQRLDELYRGLREQINGCSPHFMAVEKLYFGR 61

Query: 78  DAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLM 134
           +      + QAR +A+L  A   + V E  P+  K  V G G  +K QI  M+++++
Sbjct: 62  NTTTAENVWQARGVALLVGAQNDLFVLEPKPSEAKITVCGDGRAEKSQIQRMVQVIL 118


>gi|28493234|ref|NP_787395.1| crossover junction endodeoxyribonuclease [Tropheryma whipplei str.
           Twist]
 gi|28572652|ref|NP_789432.1| crossover junction endodeoxyribonuclease RuvC [Tropheryma whipplei
           TW08/27]
 gi|28410784|emb|CAD67170.1| crossover junction endodeoxyribonuclease RuvC [Tropheryma whipplei
           TW08/27]
 gi|28476275|gb|AAO44364.1| crossover junction endodeoxyribonuclease [Tropheryma whipplei str.
           Twist]
          Length = 183

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 82/154 (53%), Gaps = 8/154 (5%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAF--RLCQLYEGLTDVIKN 62
           +RI+ +DPGL   G  +V+  G  L        V    +SL+F  R+ ++ + L  +++ 
Sbjct: 1   MRIMAVDPGLTNCGVAVVNATGP-LSLELLAVKVFHTDRSLSFENRIGKIGDSLLSMLEE 59

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALAR--IPVSEYAPNTIKKAVIGVGH 120
           + P+  A+E+VF   + ++T+  G A  I + S    +    ++ + P+ IK ++ G G+
Sbjct: 60  FSPDLFALEKVFAQHN-LSTVS-GVAGVIGVASYLCYKHGTHIAFHTPSEIKASICGYGN 117

Query: 121 GDKKQIHMML-KMLMPESFFKGKDAADALAIAVC 153
             K QI  M+ ++ + +      DA+DALA+AVC
Sbjct: 118 AKKDQIRSMVNRVFLSQDIPLRHDASDALALAVC 151


>gi|118617339|ref|YP_905671.1| Holliday junction resolvase [Mycobacterium ulcerans Agy99]
 gi|183982123|ref|YP_001850414.1| crossover junction endodeoxyribonuclease RuvC [Mycobacterium
           marinum M]
 gi|166233272|sp|A0PPD1|RUVC_MYCUA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|238690932|sp|B2HN61|RUVC_MYCMM RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|118569449|gb|ABL04200.1| crossover junction endodeoxyribonuclease RuvC [Mycobacterium
           ulcerans Agy99]
 gi|183175449|gb|ACC40559.1| crossover junction endodeoxyribonuclease RuvC [Mycobacterium
           marinum M]
          Length = 184

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 83/156 (53%), Gaps = 2/156 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G  +++   G  L  +    + +     L+ RL  + E +   ++  
Sbjct: 1   MRVMGVDPGLTRCGLSLIESGQGRQLTALDVDVVRTPSDAPLSSRLLAINEAVEHWLETH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RP+  A+E+VF  ++    +   QA  +  L+ A   + V  + P+ +K AV G G  DK
Sbjct: 61  RPDVVAIERVFSQQNVKTVMGTAQAGGVVALAAAKRGVEVHFHTPSEVKAAVTGNGTADK 120

Query: 124 KQIH-MMLKMLMPESFFKGKDAADALAIAVCHAYHA 158
            Q+  M+ ++L  ++     DAADALA+A+CH + A
Sbjct: 121 AQVTAMVTRILALQTKPTPADAADALALAICHCWRA 156


>gi|108799232|ref|YP_639429.1| Holliday junction resolvase [Mycobacterium sp. MCS]
 gi|119868348|ref|YP_938300.1| Holliday junction resolvase [Mycobacterium sp. KMS]
 gi|126434890|ref|YP_001070581.1| Holliday junction resolvase [Mycobacterium sp. JLS]
 gi|108769651|gb|ABG08373.1| Holliday junction endonuclease RuvC [Mycobacterium sp. MCS]
 gi|119694437|gb|ABL91510.1| Holliday junction endonuclease RuvC [Mycobacterium sp. KMS]
 gi|126234690|gb|ABN98090.1| Holliday junction endonuclease RuvC [Mycobacterium sp. JLS]
          Length = 193

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 77/150 (51%), Gaps = 2/150 (1%)

Query: 11  DPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAA 69
           DPGL R G  +++   G  +  +    + +   + L  RL  + + +   +   RP+  A
Sbjct: 15  DPGLTRCGLSVIESGQGRKVIALDVDVVRTPADEQLHRRLLIISDTVEHWMDTHRPDVIA 74

Query: 70  VEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI-HM 128
           +E+VF N +A   +   QA  +  L+ A   I V  + P+ +K AV G G  DK Q+  M
Sbjct: 75  IERVFANHNANTAMGTAQAGGVIALAAAKRDIDVHFHTPSEVKAAVTGNGRADKAQVTEM 134

Query: 129 MLKMLMPESFFKGKDAADALAIAVCHAYHA 158
           + ++L  ++     DAADALA+A+CH + A
Sbjct: 135 VTRILALQAKPTPADAADALALAICHCWRA 164


>gi|15827158|ref|NP_301421.1| Holliday junction resolvase [Mycobacterium leprae TN]
 gi|221229636|ref|YP_002503052.1| Holliday junction resolvase [Mycobacterium leprae Br4923]
 gi|730697|sp|P40834|RUVC_MYCLE RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|466822|gb|AAA17097.1| ruvC [Mycobacterium leprae]
 gi|13092706|emb|CAC29989.1| crossover junction endodeoxyribonuclease [Mycobacterium leprae]
 gi|219932743|emb|CAR70574.1| crossover junction endodeoxyribonuclease [Mycobacterium leprae
           Br4923]
          Length = 188

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 84/160 (52%), Gaps = 10/160 (6%)

Query: 5   IRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G  +V+   G  +  +     V  VR      + +    ++DV+++W
Sbjct: 1   MRVMGVDPGLTRCGLSVVENGRGSQVVALD----VDVVRTPSDAPVSKRLLAVSDVVEHW 56

Query: 64  ----RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVG 119
                P+  A+E+VF  ++    +   QA  +  L+ A   I V  + P+ +K AV G G
Sbjct: 57  LDAHHPDVMAIERVFSQQNVSTVMGTAQAGGVIALAAARRGIDVHFHTPSEVKAAVTGNG 116

Query: 120 HGDKKQIH-MMLKMLMPESFFKGKDAADALAIAVCHAYHA 158
             +K Q+  M+ ++L  ++     DAADALA+A+CH + A
Sbjct: 117 AANKAQVTAMVTRILALQAKPTPADAADALALAICHCWRA 156


>gi|224370136|ref|YP_002604300.1| RuvC [Desulfobacterium autotrophicum HRM2]
 gi|223692853|gb|ACN16136.1| RuvC [Desulfobacterium autotrophicum HRM2]
          Length = 164

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 67/135 (49%), Gaps = 1/135 (0%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M   +++IG+DPGL  TG G+++  G ++   S G+I +        RL  ++  + D +
Sbjct: 1   MSLMVKVIGLDPGLAGTGIGVIEGRGTDIADYSFGSISTHKDDPTHSRLNTIFTRVCDFL 60

Query: 61  KNWRPEEAAVEQVF-VNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVG 119
              +P+   +E VF + K   + + LG+   + +++   A   V E +    K+ V G G
Sbjct: 61  CQEKPDLVVIEDVFSLEKYPGSGIMLGKVSGVLLVAAFKAGARVEELSVREAKRVVTGSG 120

Query: 120 HGDKKQIHMMLKMLM 134
             DK Q+   ++ ++
Sbjct: 121 SADKNQVEKSVRNIL 135


>gi|169836416|ref|ZP_02869604.1| crossover junction endodeoxyribonuclease RuvC [candidate division
           TM7 single-cell isolate TM7a]
          Length = 99

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 47/91 (51%)

Query: 31  FVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARA 90
            VS+G + +     L  RL ++Y  L ++I    P+  +VE++F  K+    + +  AR 
Sbjct: 8   MVSAGVVRTPPHTPLPDRLEEIYNSLKEIIHETNPDIMSVEKLFFAKNVTTAISVSHARG 67

Query: 91  IAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
           + +L+   A I ++EY P  IK  + G G G
Sbjct: 68  VVLLTAKQAGIKIAEYTPLQIKNTLTGYGKG 98


>gi|281413716|ref|ZP_06245458.1| Holliday junction endonuclease RuvC [Micrococcus luteus NCTC 2665]
          Length = 193

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/126 (33%), Positives = 65/126 (51%), Gaps = 1/126 (0%)

Query: 10  IDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEA 68
           +DPGL R G  +VDV A      V      +     L  RL ++ E ++ V+   RP+ A
Sbjct: 1   MDPGLTRCGIAVVDVDARRRAALVHVEVAGTPPTAPLDERLLRIDEAVSAVLAAHRPDRA 60

Query: 69  AVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHM 128
           AVE++F N +    L   QA  +AI + A A +PV  + P+ +K AV G G   K+Q+  
Sbjct: 61  AVERMFANTNTPTVLGTAQAAGVAIAAAARAGVPVGLHTPSEVKAAVTGHGDAGKEQVTT 120

Query: 129 MLKMLM 134
           M+  ++
Sbjct: 121 MVTRIL 126


>gi|239917791|ref|YP_002957349.1| Holliday junction endonuclease RuvC [Micrococcus luteus NCTC 2665]
 gi|239838998|gb|ACS30795.1| Holliday junction endonuclease RuvC [Micrococcus luteus NCTC 2665]
          Length = 211

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/126 (33%), Positives = 65/126 (51%), Gaps = 1/126 (0%)

Query: 10  IDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEA 68
           +DPGL R G  +VDV A      V      +     L  RL ++ E ++ V+   RP+ A
Sbjct: 1   MDPGLTRCGIAVVDVDARRRAALVHVEVAGTPPTAPLDERLLRIDEAVSAVLAAHRPDRA 60

Query: 69  AVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHM 128
           AVE++F N +    L   QA  +AI + A A +PV  + P+ +K AV G G   K+Q+  
Sbjct: 61  AVERMFANTNTPTVLGTAQAAGVAIAAAARAGVPVGLHTPSEVKAAVTGHGDAGKEQVTT 120

Query: 129 MLKMLM 134
           M+  ++
Sbjct: 121 MVTRIL 126


>gi|296139643|ref|YP_003646886.1| crossover junction endodeoxyribonuclease RuvC [Tsukamurella
           paurometabola DSM 20162]
 gi|296027777|gb|ADG78547.1| crossover junction endodeoxyribonuclease RuvC [Tsukamurella
           paurometabola DSM 20162]
          Length = 215

 Score = 53.9 bits (128), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 82/156 (52%), Gaps = 2/156 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G+ +V+  +G  +  +    + +     L  RL  ++      +   
Sbjct: 1   MRVMGVDPGLTRCGFSVVETGSGRKVVALDVDVVRTPSTMPLPERLLAVWTAAEFWMDTH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RP+  AVE+VF   +    +   QA  +  L+ A   I V  + P+ +K AV G G+  K
Sbjct: 61  RPDVIAVERVFAQHNVSTAMGTAQAGGVVALAAARRGIDVHFHTPSEVKAAVTGNGNAGK 120

Query: 124 KQIHMML-KMLMPESFFKGKDAADALAIAVCHAYHA 158
            Q+  M+ K+L  +   +  DAADALA+AVCH++ A
Sbjct: 121 AQVTAMITKILGLQKAPEPADAADALALAVCHSWRA 156


>gi|254443446|ref|ZP_05056922.1| crossover junction endodeoxyribonuclease RuvC [Verrucomicrobiae
           bacterium DG1235]
 gi|198257754|gb|EDY82062.1| crossover junction endodeoxyribonuclease RuvC [Verrucomicrobiae
           bacterium DG1235]
          Length = 190

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 78/153 (50%), Gaps = 5/153 (3%)

Query: 7   IIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLC--QLYEGLTDVIKNW 63
           I+GIDP LR TG  +V+ + G     + S T+    +QS++   C   +   + +++  +
Sbjct: 38  ILGIDPSLRGTGLAVVEFSSGGRSTLLRSETLKQ--KQSVSMPQCLGNICSRVLEILDTY 95

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
             +  A+EQ    ++      LG AR  AI + A+    V EY P  +K+AV+G G   K
Sbjct: 96  EIDVVALEQTIYVQNFQTAQILGAARGAAIAAAAMRGKEVFEYPPLRVKQAVVGHGRASK 155

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
           +Q+   ++ L+        D +DA A+A+ HA+
Sbjct: 156 EQVAKTIRTLLGHGALLELDESDAAAVAMTHAF 188


>gi|163937883|ref|YP_001642769.1| crossover junction endodeoxyribonuclease RuvC [Bacillus
           weihenstephanensis KBAB4]
 gi|163865738|gb|ABY46794.1| crossover junction endodeoxyribonuclease RuvC [Bacillus
           weihenstephanensis KBAB4]
          Length = 166

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 71/159 (44%), Gaps = 5/159 (3%)

Query: 4   SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           S R +G+D  L   G  I+D+    L  V    I +  +Q    RL ++   L  ++  +
Sbjct: 3   SRRFLGLDMSLASAGIAIIDIVDGELRIVHKQRIKTNPKQRHGERLHKIATELKSILIEY 62

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +P +  + +   ++ A  T  L +   ++ L   L    + E +P TIK  + G G  DK
Sbjct: 63  QPFDTIIREQGFSRFAKTTQALFKVVGVSDL--VLRDYAIVEISPTTIKLVMTGDGKADK 120

Query: 124 KQIHMMLKMLM---PESFFKGKDAADALAIAVCHAYHAN 159
           K++   ++ +M    +  F   D +DA AI + H    N
Sbjct: 121 KEVEKAVRKIMRLDDDYIFISDDESDACAIILTHLIQNN 159


>gi|254413947|ref|ZP_05027715.1| hypothetical protein MC7420_4064 [Microcoleus chthonoplastes PCC
           7420]
 gi|196179083|gb|EDX74079.1| hypothetical protein MC7420_4064 [Microcoleus chthonoplastes PCC
           7420]
          Length = 164

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 70/149 (46%), Gaps = 9/149 (6%)

Query: 8   IGIDPGLRRTGWGIVDVAGD-NLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           +GIDPGL   GW I+    +  +C +  GTI +    S   RL +L E L  +++ + P 
Sbjct: 8   LGIDPGLATVGWSILTTDSNGTVCLIDYGTIETEKTLSTPERLAELEEDLVTLMEEFEPT 67

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALAR----IPVSEYAPNTIKKAVIGVGHGD 122
           +AA+E  F ++   A    G  +A+ I++    R    IPV  +  +   KA +G G   
Sbjct: 68  KAALEMPFFSRQIKA--AGGVLQAVGIINLVCYREAEIIPVLLHQSS--WKAHLGDGRAS 123

Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAIA 151
           K ++  +L  L         D+ DA+ I 
Sbjct: 124 KGEVAEILSALFDLENLPVDDSVDAIGIG 152


>gi|284800174|ref|ZP_06390579.1| crossover junction endodeoxyribonuclease RuvC [Neisseria subflava
           NJ9703]
 gi|284795773|gb|EFC51120.1| crossover junction endodeoxyribonuclease RuvC [Neisseria subflava
           NJ9703]
          Length = 96

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 42/71 (59%)

Query: 85  LGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESFFKGKDA 144
           LGQAR  AI +  +  +PV EY    +K+AV+G G   K+Q+  M+  ++  S     DA
Sbjct: 2   LGQARGAAIAALVMHDLPVFEYTALQVKQAVVGKGKAAKEQVQHMVVQMLALSGTPQADA 61

Query: 145 ADALAIAVCHA 155
           AD LA+A+ HA
Sbjct: 62  ADGLAVALTHA 72


>gi|282853889|ref|ZP_06263226.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes J139]
 gi|282583342|gb|EFB88722.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes J139]
 gi|314923585|gb|EFS87416.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL001PA1]
 gi|314966630|gb|EFT10729.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL082PA2]
 gi|314981359|gb|EFT25453.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL110PA3]
 gi|315092025|gb|EFT64001.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL110PA4]
 gi|315092848|gb|EFT64824.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL060PA1]
 gi|315103632|gb|EFT75608.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL050PA2]
 gi|315105681|gb|EFT77657.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL030PA1]
 gi|327327454|gb|EGE69230.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL103PA1]
          Length = 181

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/155 (34%), Positives = 86/155 (55%), Gaps = 10/155 (6%)

Query: 8   IGIDPGLRR-TGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           +G+DPGL R     +    G +L  ++ G I +      A RL ++++GL +   + RP+
Sbjct: 1   MGVDPGLTRCGVGVVEGGLGSSLKLIAVGVIRTPADLDHAHRLLRIHDGLEEWRDHTRPD 60

Query: 67  EAAVEQVFV--NKDAVATLKLGQARAIAILSPALAR--IPVSEYAPNTIKKAVIGVGHGD 122
             AVE+VF   N++ VA    G A+A  I     AR  +PV+ + P+ +K A+ G G  D
Sbjct: 61  AIAVEKVFAQHNRNTVA----GTAQAAGIAMMIAARHGLPVALHTPSEVKAAISGSGRAD 116

Query: 123 KKQIHMML-KMLMPESFFKGKDAADALAIAVCHAY 156
           K Q+  M+ ++L   +  K  DAADA+A+A+CH +
Sbjct: 117 KAQVGFMVARVLRLSAPPKPADAADAVALAICHLW 151


>gi|289425336|ref|ZP_06427113.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes SK187]
 gi|289154314|gb|EFD03002.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes SK187]
          Length = 196

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/156 (32%), Positives = 88/156 (56%), Gaps = 2/156 (1%)

Query: 3   KSIRIIGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           +  R++G+DPGL R G G+V+    + L  ++ G I +      A RL ++++GL +   
Sbjct: 11  RVTRVMGVDPGLTRCGVGVVEGGLGSPLKLIAVGVIRTPADLDHAHRLLRIHDGLEEWRD 70

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
           + RP+  AVE+VF   +        QA  +A++  A   +PV+ + P+ +K A+ G G  
Sbjct: 71  HTRPDAVAVEKVFAQHNRNTVTGTAQAAGMAMMIAARHGLPVALHTPSEVKAAISGSGRA 130

Query: 122 DKKQIHMML-KMLMPESFFKGKDAADALAIAVCHAY 156
           DK Q+  M+ ++L   +  K  DAADA+A+A+CH +
Sbjct: 131 DKAQVGFMVARVLRLSAPPKPADAADAVALAICHLW 166


>gi|295130716|ref|YP_003581379.1| Crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes SK137]
 gi|291375442|gb|ADD99296.1| Crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes SK137]
 gi|332675561|gb|AEE72377.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes 266]
          Length = 196

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/153 (32%), Positives = 83/153 (54%), Gaps = 2/153 (1%)

Query: 6   RIIGIDPGLRR-TGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           R++G+DPGL R     +    G  L  ++ G I +      A RL ++++GL +   + R
Sbjct: 14  RVMGVDPGLTRCGVGVVEGGLGSPLKLIAVGVIRTPADLDHAHRLLRIHDGLEEWRDHTR 73

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  AVE+VF   +        QA  +A++  A   +PV+ + P+ +K A+ G G  DK 
Sbjct: 74  PDAVAVEKVFAQHNRNTVTGTAQAAGMAMMIAARHGLPVALHTPSEVKAAISGSGRADKA 133

Query: 125 QIHMML-KMLMPESFFKGKDAADALAIAVCHAY 156
           Q+  M+ ++L   +  K  DAADA+A+A+CH +
Sbjct: 134 QVGFMVARVLRLSAPPKPADAADAVALAICHLW 166


>gi|311068886|ref|YP_003973809.1| crossover junction endodeoxyribonuclease RuvC [Bacillus atrophaeus
           1942]
 gi|310869403|gb|ADP32878.1| crossover junction endodeoxyribonuclease RuvC [Bacillus atrophaeus
           1942]
          Length = 167

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 76/157 (48%), Gaps = 9/157 (5%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVS--CVRQSLAFRLCQLYEGLTDVIKNWR 64
           II  D  L  TG+ + +V G +L  +  G+I +    ++S  FRL  + + +  + K + 
Sbjct: 3   IIAFDLSLSNTGYAVGEVKGRSLKLIEVGSIGTKRFAKRSTGFRLNYIAKEIRGLYKKYE 62

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALAR-IPVSEYAPNTIKKAVIGVGHGDK 123
            ++   E+ F N   VAT ++ +   +  L   +A     SE  P +IKK + G G   K
Sbjct: 63  IDKVVKERSFSNARIVATQQIYKVNGVFELMTHIANHDDFSEITPPSIKKQLTGNGKATK 122

Query: 124 KQI-HMMLKM---LMPESF--FKGKDAADALAIAVCH 154
            ++   +LK    +M  +   FK  D +DA+A+ + +
Sbjct: 123 NEVADAVLKQFRDIMGNTTVKFKNNDESDAVAVLIAY 159


>gi|159026053|emb|CAO86294.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 161

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 68/155 (43%), Gaps = 5/155 (3%)

Query: 8   IGIDPGLRRTGWGIV-DVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           +GIDPGL   GW I+ D +      V  GTI +    S A RL ++   L ++I  ++P 
Sbjct: 5   LGIDPGLAIVGWAILRDNSELVPILVDYGTIETSKNLSTAQRLIEIERDLKELIAEYKPG 64

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E AVE  F N+   A   + QA  I  L           +      K  +G G   K ++
Sbjct: 65  EIAVEMPFFNRQIKAAGGVLQALGIINLVSCRDGGIEPIFLHQASWKCHLGHGRATKAEV 124

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANSG 161
              +K L   +     DA DA+AI    AY A SG
Sbjct: 125 AEQIKYLFGLTKMPINDAVDAIAI----AYAAFSG 155


>gi|310830401|ref|YP_003965502.1| Crossover junction endodeoxyribonuclease ruvC [Paenibacillus
           polymyxa SC2]
 gi|309249868|gb|ADO59434.1| Crossover junction endodeoxyribonuclease ruvC [Paenibacillus
           polymyxa SC2]
          Length = 194

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 74/158 (46%), Gaps = 14/158 (8%)

Query: 18  GWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVN- 76
           G+ ++ + G+ L  + SGTI +  + SL  R+  +Y  LT++   + P+    E++F N 
Sbjct: 22  GFSVIQLIGNELLVLKSGTIETDSKLSLPQRISLIYSLLTELANTYNPKIIGCEKLFFNP 81

Query: 77  -KDAVATLKLGQARAIAILSPALA-----------RIPVSEYAPNTIKKAVIGVGHGDKK 124
            +   +  K G+ ++ +I+   +            +I + ++ P T+KK V G G   K+
Sbjct: 82  RQRVPSDGKKGRNKSASIVMTNMVTGVVHLIAGQKQIMLRDFVPGTVKKYVAGNGRATKE 141

Query: 125 QIHMMLKMLMPESFFKGKDA-ADALAIAVCHAYHANSG 161
            +   +K L+     K  +A A A+ I     Y   +G
Sbjct: 142 NVIAAVKYLLQREDVKEHEADATAIGITAVKFYRDTNG 179


>gi|296170846|ref|ZP_06852407.1| crossover junction endoribonuclease subunit C [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295894502|gb|EFG74243.1| crossover junction endoribonuclease subunit C [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 184

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 84/159 (52%), Gaps = 8/159 (5%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW- 63
           +R++G+DPGL R G  +V+ +G     V+    V  VR      L +    ++D +++W 
Sbjct: 1   MRVMGVDPGLTRCGLSVVE-SGRGRSVVALD--VDVVRTPSDAPLAKRLLAISDAVEHWL 57

Query: 64  ---RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
              +P+  A+E+VF   +    +   QA  +  L+ A   + V  + P+ +K AV G G 
Sbjct: 58  ATHQPDVVAIERVFSQLNVSTVMGTAQAGGVVALAAAKRGVDVHFHTPSEVKAAVTGNGA 117

Query: 121 GDKKQIH-MMLKMLMPESFFKGKDAADALAIAVCHAYHA 158
            DK Q+  M+ K+L  ++     DAADALA+A+CH + A
Sbjct: 118 ADKAQVTAMVTKILALQAKPTPADAADALALAICHCWRA 156


>gi|67921282|ref|ZP_00514801.1| Crossover junction endoribonuclease [Crocosphaera watsonii WH 8501]
 gi|67857399|gb|EAM52639.1| Crossover junction endoribonuclease [Crocosphaera watsonii WH 8501]
          Length = 162

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 73/149 (48%), Gaps = 9/149 (6%)

Query: 8   IGIDPGLRRTGWGIVDVAGDNL-CFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           +GIDPGL   GW ++      L   +  GTI +  + S + RL ++   L+++++ ++P+
Sbjct: 7   LGIDPGLAIVGWAMLQENEQELPLIIDYGTIETNKQLSTSQRLVEIETDLSELLREFKPQ 66

Query: 67  EAAVEQVFVNKDAVATLKL--GQARAIAILSPALARIPVSE--YAPNTIKKAVIGVGHGD 122
             A+E  F N+    T+K   G  +A+ +++    R    E  +      K  +G G  +
Sbjct: 67  GIAIEMPFFNR----TIKAAGGVMQALGVINLVCYRDSKIEAIFLHQASWKCHLGDGKAN 122

Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAIA 151
           KK++  M+  L         D+ DA+AIA
Sbjct: 123 KKEVAEMVATLFDLETLPIDDSVDAIAIA 151


>gi|166363327|ref|YP_001655600.1| holliday juction resolvase [Microcystis aeruginosa NIES-843]
 gi|166085700|dbj|BAG00408.1| holliday juction resolvase [Microcystis aeruginosa NIES-843]
          Length = 161

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 64/145 (44%), Gaps = 1/145 (0%)

Query: 8   IGIDPGLRRTGWGIVDVAGDNL-CFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           +GIDPGL   GW I+    + +   V  GTI +    S A RL ++   L ++I  ++P 
Sbjct: 5   LGIDPGLAIVGWAILRDNSELMPILVDYGTIETSKNLSTAQRLIEIERDLKELIAEYKPG 64

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E AVE  F N+   A   + QA  I  L           +      K  +G G   K ++
Sbjct: 65  EIAVEMPFFNRQIKAAGGVLQALGIINLVSCRDGGIEPIFLHQASWKCHLGHGKATKAEV 124

Query: 127 HMMLKMLMPESFFKGKDAADALAIA 151
              +K L   +     DA DA+AIA
Sbjct: 125 AEQIKYLFGLTKMPINDAVDAIAIA 149


>gi|254821997|ref|ZP_05226998.1| Holliday junction resolvase [Mycobacterium intracellulare ATCC
           13950]
          Length = 184

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 80/156 (51%), Gaps = 2/156 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G  +V+   G  +  +    + +     LA RL  + + +   +   
Sbjct: 1   MRVMGVDPGLTRCGLSVVESGRGRTVVALDVDVVRTPSDAPLAERLLTISDAVEHWLATH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P+  AVE+VF   +    +   QA  +  L+ A   I V  + P+ +K AV G G  DK
Sbjct: 61  EPDVMAVERVFSQLNVSTVMGTAQAGGVVALAAARRGIDVHFHTPSEVKAAVTGNGAADK 120

Query: 124 KQIH-MMLKMLMPESFFKGKDAADALAIAVCHAYHA 158
            Q+  M+ ++L  ++     DAADALA+A+CH + A
Sbjct: 121 AQVTAMVTRILALQAKPTPADAADALALAICHCWRA 156


>gi|126658545|ref|ZP_01729692.1| Holliday juction resolvase; RuvC [Cyanothece sp. CCY0110]
 gi|126620132|gb|EAZ90854.1| Holliday juction resolvase; RuvC [Cyanothece sp. CCY0110]
          Length = 162

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 71/147 (48%), Gaps = 5/147 (3%)

Query: 8   IGIDPGLRRTGWGIVDVAGDNL-CFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           +GIDPGL   GW I+  +   L   +  GTI +  + S + RL ++ E L +++  ++P+
Sbjct: 7   LGIDPGLAIVGWAILQESEQQLPLIIDYGTIETNKQLSTSQRLLEIEEDLGELLTEFKPQ 66

Query: 67  EAAVEQVFVNKDAVATLKLGQARA-IAILSPALARI-PVSEYAPNTIKKAVIGVGHGDKK 124
             A+E  F N+   A   + Q    I ++    A+I P+  +      K  +G G   KK
Sbjct: 67  GIAIEMPFFNRTIKAAGGVMQGLGVINLVCYREAKIEPI--FLHQASWKCHLGNGKAKKK 124

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIA 151
           ++  M+  L         D+ DA+AIA
Sbjct: 125 EVAEMIATLFNLDKLPIDDSVDAIAIA 151


>gi|254775924|ref|ZP_05217440.1| Holliday junction resolvase [Mycobacterium avium subsp. avium ATCC
           25291]
          Length = 188

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 84/159 (52%), Gaps = 8/159 (5%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW- 63
           +R++G+DPGL R G  +V+ +G     V+    V  VR      L +    ++D +++W 
Sbjct: 1   MRVMGVDPGLTRCGLSVVE-SGRGRTVVALD--VDVVRTPSEAPLAERLLSISDAVEHWL 57

Query: 64  ---RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
              +P+  A+E+VF   +    +   QA  +  L+ A   I V  + P+ +K AV G G 
Sbjct: 58  ATHQPDVVAIERVFSQLNVTTVMGTAQAGGVVALAAAKRGIGVHFHTPSEVKAAVTGNGA 117

Query: 121 GDKKQIH-MMLKMLMPESFFKGKDAADALAIAVCHAYHA 158
            +K Q+  M+ ++L  ++     DAADALA+A+CH + A
Sbjct: 118 ANKAQVTAMVTRILALQAKPTPADAADALALAICHCWRA 156


>gi|329945622|ref|ZP_08293355.1| crossover junction endodeoxyribonuclease [Actinomyces sp. oral
           taxon 170 str. F0386]
 gi|328528625|gb|EGF55590.1| crossover junction endodeoxyribonuclease [Actinomyces sp. oral
           taxon 170 str. F0386]
          Length = 189

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 66/130 (50%), Gaps = 1/130 (0%)

Query: 31  FVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARA 90
            V  G + +   QS   RL  + E + D I    P   ++E+VF   +  + + + Q   
Sbjct: 11  LVEVGVVRTPPSQSPELRLLTITETIEDWIARLGPSVVSIERVFAQDNLRSVIGVAQVMG 70

Query: 91  IAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIH-MMLKMLMPESFFKGKDAADALA 149
            A+ + A + + V+++ P+  K AV G G  DK Q+  M+ ++L  ++  +  DAADALA
Sbjct: 71  TAMATAARSGLEVAQHTPSEAKAAVTGSGTADKTQVQAMVTRVLGLDAPPRPADAADALA 130

Query: 150 IAVCHAYHAN 159
            A+CH +   
Sbjct: 131 QAICHGWRGG 140


>gi|172034829|ref|YP_001798606.1| putative RuvC-like Holliday junction resolvase [Cyanothece sp. ATCC
           51142]
 gi|171701593|gb|ACB54572.1| putative RuvC-like Holliday junction resolvase [Cyanothece sp. ATCC
           51142]
          Length = 215

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 46/83 (55%), Gaps = 1/83 (1%)

Query: 6   RIIGIDPGLRRTGWGIVD-VAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           R +GI P + + GW I++    ++   V  G I +     L  RL ++   L ++IK+++
Sbjct: 59  RWLGIKPSISQLGWAILEGETTEDPQMVDFGLISTNSDDPLPCRLAEIEADLQEIIKDYQ 118

Query: 65  PEEAAVEQVFVNKDAVATLKLGQ 87
           P + A+E+ F+N +  +T KL Q
Sbjct: 119 PTQIAIEKTFINPEFPSTAKLLQ 141


>gi|320534405|ref|ZP_08034888.1| crossover junction endodeoxyribonuclease [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320133380|gb|EFW25845.1| crossover junction endodeoxyribonuclease [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 178

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 65/126 (51%), Gaps = 1/126 (0%)

Query: 35  GTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAIL 94
           G + +   QS   RL  + E + D I    P   ++E+VF   +  + + + Q    A+ 
Sbjct: 4   GVVRTPPSQSPELRLLTITEAIEDWIARLGPTVVSIERVFAQDNLRSVIGVAQVMGTAMT 63

Query: 95  SPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMML-KMLMPESFFKGKDAADALAIAVC 153
           + A A + V+++ P+  K AV G G  DK Q+  M+ ++L  ++  +  DAADALA A+C
Sbjct: 64  TAARAGLEVAQHTPSEAKAAVTGSGIADKAQVQTMVTRILGLDAPPRPADAADALAQAIC 123

Query: 154 HAYHAN 159
           H +   
Sbjct: 124 HGWRGG 129


>gi|41407134|ref|NP_959970.1| Holliday junction resolvase [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|118464158|ref|YP_882657.1| Holliday junction resolvase [Mycobacterium avium 104]
 gi|81571427|sp|Q741Q2|RUVC_MYCPA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|166233268|sp|A0QIB9|RUVC_MYCA1 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|41395485|gb|AAS03353.1| RuvC [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|118165445|gb|ABK66342.1| crossover junction endodeoxyribonuclease RuvC [Mycobacterium avium
           104]
          Length = 188

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 84/159 (52%), Gaps = 8/159 (5%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW- 63
           +R++G+DPGL R G  +V+ +G     V+    V  VR      L +    ++D +++W 
Sbjct: 1   MRVMGVDPGLTRCGLSVVE-SGRGRTVVALD--VDVVRTPSDAPLAERLLSISDAVEHWL 57

Query: 64  ---RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
              +P+  A+E+VF   +    +   QA  +  L+ A   I V  + P+ +K AV G G 
Sbjct: 58  ATHQPDVVAIERVFSQLNVTTVMGTAQAGGVVALAAAKRGIGVHFHTPSEVKAAVTGNGA 117

Query: 121 GDKKQIH-MMLKMLMPESFFKGKDAADALAIAVCHAYHA 158
            +K Q+  M+ ++L  ++     DAADALA+A+CH + A
Sbjct: 118 ANKAQVTAMVTRILALQAKPTPADAADALALAICHCWRA 156


>gi|111023844|ref|YP_706816.1| Holliday junction resolvase [Rhodococcus jostii RHA1]
 gi|123339588|sp|Q0S1C8|RUVC_RHOSR RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|110823374|gb|ABG98658.1| crossover junction endoribonuclease [Rhodococcus jostii RHA1]
          Length = 189

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/156 (32%), Positives = 80/156 (51%), Gaps = 2/156 (1%)

Query: 5   IRIIGIDPGLRR-TGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R     +    G  +  ++   + +     L+ RL ++ E     I   
Sbjct: 1   MRVLGVDPGLTRCGFGVVDGGGGRTVTPIAVDVVRTPADLELSSRLLRISEAAESWIDLH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RPE  A+E+VF   +    +   QA  +  L+ A   IPV  + P+ +K AV G G  DK
Sbjct: 61  RPEVVAIERVFSQHNVRTAMGTAQAGGVVALAAARRGIPVCFHTPSEVKAAVTGSGSADK 120

Query: 124 KQIH-MMLKMLMPESFFKGKDAADALAIAVCHAYHA 158
            Q+  M+ ++L   +  K  DAADALA+A+CH + A
Sbjct: 121 AQVTAMVTRILKLAAAPKPADAADALALAICHCWRA 156


>gi|289428319|ref|ZP_06430006.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes J165]
 gi|289158468|gb|EFD06684.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes J165]
 gi|313764322|gb|EFS35686.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL013PA1]
 gi|313772295|gb|EFS38261.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL074PA1]
 gi|313792008|gb|EFS40109.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL110PA1]
 gi|313802042|gb|EFS43276.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL110PA2]
 gi|313807653|gb|EFS46140.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL087PA2]
 gi|313810160|gb|EFS47881.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL083PA1]
 gi|313812812|gb|EFS50526.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL025PA1]
 gi|313815860|gb|EFS53574.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL059PA1]
 gi|313818690|gb|EFS56404.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL046PA2]
 gi|313820460|gb|EFS58174.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL036PA1]
 gi|313822734|gb|EFS60448.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL036PA2]
 gi|313825332|gb|EFS63046.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL063PA1]
 gi|313827627|gb|EFS65341.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL063PA2]
 gi|313830491|gb|EFS68205.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL007PA1]
 gi|313833527|gb|EFS71241.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL056PA1]
 gi|313838863|gb|EFS76577.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL086PA1]
 gi|314915312|gb|EFS79143.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL005PA4]
 gi|314918137|gb|EFS81968.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL050PA1]
 gi|314920214|gb|EFS84045.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL050PA3]
 gi|314925069|gb|EFS88900.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL036PA3]
 gi|314931737|gb|EFS95568.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL067PA1]
 gi|314955638|gb|EFT00040.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL027PA1]
 gi|314958034|gb|EFT02137.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL002PA1]
 gi|314960394|gb|EFT04496.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL002PA2]
 gi|314962664|gb|EFT06764.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL082PA1]
 gi|314967470|gb|EFT11569.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL037PA1]
 gi|314973491|gb|EFT17587.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL053PA1]
 gi|314976171|gb|EFT20266.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL045PA1]
 gi|314978570|gb|EFT22664.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL072PA2]
 gi|314983807|gb|EFT27899.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL005PA1]
 gi|314987988|gb|EFT32079.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL005PA2]
 gi|314989798|gb|EFT33889.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL005PA3]
 gi|315077880|gb|EFT49931.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL053PA2]
 gi|315080505|gb|EFT52481.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL078PA1]
 gi|315084176|gb|EFT56152.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL027PA2]
 gi|315085519|gb|EFT57495.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL002PA3]
 gi|315088424|gb|EFT60400.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL072PA1]
 gi|315096038|gb|EFT68014.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL038PA1]
 gi|315098666|gb|EFT70642.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL059PA2]
 gi|315101331|gb|EFT73307.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL046PA1]
 gi|315108549|gb|EFT80525.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL030PA2]
 gi|327326318|gb|EGE68108.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL096PA2]
 gi|327330389|gb|EGE72138.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL097PA1]
 gi|327331807|gb|EGE73544.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL096PA3]
 gi|327443584|gb|EGE90238.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL013PA2]
 gi|327445788|gb|EGE92442.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL043PA2]
 gi|327448229|gb|EGE94883.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL043PA1]
 gi|327450650|gb|EGE97304.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL087PA3]
 gi|327453273|gb|EGE99927.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL092PA1]
 gi|327454012|gb|EGF00667.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL083PA2]
 gi|328753270|gb|EGF66886.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL025PA2]
 gi|328753339|gb|EGF66955.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL020PA1]
 gi|328754068|gb|EGF67684.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL087PA1]
 gi|328760720|gb|EGF74286.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL099PA1]
          Length = 181

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/151 (33%), Positives = 85/151 (56%), Gaps = 2/151 (1%)

Query: 8   IGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           +G+DPGL R G G+V+    + L  ++ G I +      A RL ++++GL +   + RP+
Sbjct: 1   MGVDPGLTRCGVGVVEGGLGSPLKLIAVGVIRTPADLDHAHRLLRIHDGLEEWRDHTRPD 60

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             AVE+VF   +        QA  +A++  A   +PV+ + P+ +K A+ G G  DK Q+
Sbjct: 61  AVAVEKVFAQHNRNTVTGTAQAAGMAMMIAARHGLPVALHTPSEVKAAISGSGRADKAQV 120

Query: 127 HMML-KMLMPESFFKGKDAADALAIAVCHAY 156
             M+ ++L   +  K  DAADA+A+A+CH +
Sbjct: 121 GFMVARVLRLSAPPKPADAADAVALAICHLW 151


>gi|325474388|gb|EGC77576.1| crossover junction endodeoxyribonuclease ruvC [Treponema
          denticola F0402]
          Length = 98

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/81 (24%), Positives = 49/81 (60%)

Query: 17 TGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVN 76
          TG+GI+  + +    +  G+I +        RL ++++ ++++I+ +RP+EA +E ++  
Sbjct: 4  TGYGIISFSNNRFECIEYGSISTEPHLLQGERLLKIFDRVSELIEKYRPKEAGIETLYFA 63

Query: 77 KDAVATLKLGQARAIAILSPA 97
          K+A + + + +AR + +L+ A
Sbjct: 64 KNATSAMSVSEARGVVLLALA 84


>gi|172034980|ref|YP_001801481.1| Holliday junction resolvase [Cyanothece sp. ATCC 51142]
 gi|171696434|gb|ACB49415.1| Holliday junction resolvase [Cyanothece sp. ATCC 51142]
          Length = 174

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 68/147 (46%), Gaps = 5/147 (3%)

Query: 8   IGIDPGLRRTGWGIVDVAGDNL-CFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           +GIDPGL   GW ++  +   L   +  GTI +  + S + RL ++   L +++  + P+
Sbjct: 19  LGIDPGLAIVGWAMLQESEQQLPLIIDYGTIETNKQLSTSQRLLEIESDLGELLTEFEPQ 78

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSE--YAPNTIKKAVIGVGHGDKK 124
             A+E  F N+   A    G  +A+ +++    R    E  +      K  +G G   KK
Sbjct: 79  GIAIEMPFFNRTIKAA--GGVMQALGVINLVCYRETNIEPIFLHQASWKCHLGDGKAKKK 136

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIA 151
           ++  M+  L         D+ DA+AIA
Sbjct: 137 EVAQMITTLFNLDKLPIDDSVDAIAIA 163


>gi|269219376|ref|ZP_06163230.1| crossover junction endodeoxyribonuclease RuvC [Actinomyces sp. oral
           taxon 848 str. F0332]
 gi|269211169|gb|EEZ77509.1| crossover junction endodeoxyribonuclease RuvC [Actinomyces sp. oral
           taxon 848 str. F0332]
          Length = 197

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 59/116 (50%), Gaps = 1/116 (0%)

Query: 20  GIVDVAG-DNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKD 78
           G VD  G   +  V    + S    +   RL  + +GL  VI  ++P+  AVE+VF   +
Sbjct: 2   GTVDAGGARRVSLVDMRVVRSPAELAPHKRLLIIADGLQKVIDAFKPDVVAVERVFAQSN 61

Query: 79  AVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLM 134
             +     Q   I +L+ A A + ++ + P+ +K AV G G  DK+Q+ +M++ ++
Sbjct: 62  VRSVTGTAQVAGIVMLAAARAGLRLAMHTPSEVKAAVTGNGRADKRQVQVMVQRIL 117


>gi|289706229|ref|ZP_06502592.1| crossover junction endodeoxyribonuclease [Micrococcus luteus SK58]
 gi|289557068|gb|EFD50396.1| crossover junction endodeoxyribonuclease [Micrococcus luteus SK58]
          Length = 200

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 52/91 (57%)

Query: 44  SLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPV 103
           SL  RL ++ E ++ V+   RP+ AAVE++F N +    L   QA  +AI + A A +PV
Sbjct: 25  SLDQRLLRIDEAVSAVLVAHRPDRAAVERMFANTNTPTVLGTAQAAGVAIAAAARAGVPV 84

Query: 104 SEYAPNTIKKAVIGVGHGDKKQIHMMLKMLM 134
             + P+ +K AV G G   K+Q+  M+  ++
Sbjct: 85  GLHTPSEVKAAVTGHGDAGKEQVTTMVTRIL 115


>gi|227504980|ref|ZP_03935029.1| Holliday junction resolvase [Corynebacterium striatum ATCC 6940]
 gi|227198430|gb|EEI78478.1| Holliday junction resolvase [Corynebacterium striatum ATCC 6940]
          Length = 160

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 40/117 (34%), Positives = 67/117 (57%), Gaps = 1/117 (0%)

Query: 43  QSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIP 102
           + L  RL +L   + + +++++P+  A+E+VF   +    ++      + +L+ A   IP
Sbjct: 12  KELTERLLRLSIAVKEWMEDYKPDVIAIERVFERGEVSTVMQTAHVVGVVVLAAAERDIP 71

Query: 103 VSEYAPNTIKKAVIGVGHGDKKQIHMML-KMLMPESFFKGKDAADALAIAVCHAYHA 158
           V  Y P+ +KKA+ G G  DKKQ+  M+ ++L      K  DAADALA+AVCH + A
Sbjct: 72  VHMYTPSEVKKAISGNGRADKKQMTAMITRILGLGEPPKPADAADALALAVCHCWRA 128


>gi|313837774|gb|EFS75488.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL037PA2]
 gi|314927344|gb|EFS91175.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL044PA1]
 gi|314972426|gb|EFT16523.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL037PA3]
 gi|328907429|gb|EGG27195.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           sp. P08]
          Length = 181

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 85/155 (54%), Gaps = 2/155 (1%)

Query: 8   IGIDPGLRRTGWGIVDVAGDNLC-FVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           +G+DPGL R G G+V+         ++ G I +      A RL ++++GL +   + RP+
Sbjct: 1   MGVDPGLTRCGVGVVEGGLGVPVKLIAVGVIRTPADLDHAHRLLRIHDGLEEWRDHTRPD 60

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+E+VF   +        QA  +A++  A   +PV+ + P+ +K A+ G G  DK Q+
Sbjct: 61  AIAIEKVFAQHNRNTVTGTAQAAGMAMMIAARHGLPVALHTPSEVKAAISGSGRADKAQV 120

Query: 127 HMML-KMLMPESFFKGKDAADALAIAVCHAYHANS 160
            +M+ ++L   +  K  DAADA+A+A+CH +   +
Sbjct: 121 GLMVARVLRLSAPPKPADAADAVALAICHLWRGEA 155


>gi|218438641|ref|YP_002376970.1| Crossover junction endodeoxyribonuclease [Cyanothece sp. PCC 7424]
 gi|218171369|gb|ACK70102.1| Crossover junction endodeoxyribonuclease [Cyanothece sp. PCC 7424]
          Length = 162

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 36/153 (23%), Positives = 74/153 (48%), Gaps = 9/153 (5%)

Query: 4   SIRIIGIDPGLRRTGWGIVDVAGDNL-CFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
           S R +G+DPG+ R GW ++D         +  GTI +  +     RL ++   +++++  
Sbjct: 2   SQRWLGLDPGIARIGWAVLDNDEQTTPILLDYGTIETSKQCPTPQRLLEIETDISELLSE 61

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALAR----IPVSEYAPNTIKKAVIGV 118
           ++PE+ A+E  F ++   A    G  +A+ +L+  + R    IP+  +  +   K  +  
Sbjct: 62  FKPEKVAIEMPFFSRQIKAA--GGVIQALGVLNLVIYRELKIIPILLHQSSW--KCHLDH 117

Query: 119 GHGDKKQIHMMLKMLMPESFFKGKDAADALAIA 151
           G   K+++  +++ +         D  DA+AIA
Sbjct: 118 GRATKEEVAEVIQSIFHLETLPIDDTVDAIAIA 150


>gi|307149943|ref|YP_003890986.1| Holliday junction resolvasome endonuclease subunit-like protein
           [Cyanothece sp. PCC 7822]
 gi|306986743|gb|ADN18621.1| Holliday junction resolvasome endonuclease subunit-like protein
           [Cyanothece sp. PCC 7822]
          Length = 392

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 20/77 (25%), Positives = 44/77 (57%), Gaps = 3/77 (3%)

Query: 6   RIIGIDPGLRRTGWGIVDVAGDNL---CFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
           R +GIDP L    W +++ AG++      +  GTI +  ++  + RL +L + L ++++ 
Sbjct: 231 RTLGIDPALGTLRWAVLEEAGNDYDLPLILDYGTITTTPKRPTSQRLSELEQDLVEILRE 290

Query: 63  WRPEEAAVEQVFVNKDA 79
           + P + A+E  ++N ++
Sbjct: 291 FNPTDVAIEIPYLNTES 307


>gi|169629968|ref|YP_001703617.1| crossover junction endodeoxyribonuclease RuvC [Mycobacterium
           abscessus ATCC 19977]
 gi|169241935|emb|CAM62963.1| Probable crossover junction endodeoxyribonuclease RuvC
           [Mycobacterium abscessus]
          Length = 169

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/117 (34%), Positives = 63/117 (53%), Gaps = 1/117 (0%)

Query: 43  QSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIP 102
           Q L  RL  + E +   ++  RP+  A+E+VF  ++    +   QA  +  L  A   I 
Sbjct: 24  QPLPQRLLVISEVVEHWMETHRPDVVAIERVFAQQNVSTVMGTAQAGGVIALCAAKRGIE 83

Query: 103 VSEYAPNTIKKAVIGVGHGDKKQIH-MMLKMLMPESFFKGKDAADALAIAVCHAYHA 158
           V  + P+ +K AV G G  DK Q+  M+ ++L  ++  K  DAADALA+A+CH + A
Sbjct: 84  VYFHTPSEVKAAVTGNGRADKSQVTAMVTRILNLQAAPKPADAADALALAICHCWRA 140


>gi|218246333|ref|YP_002371704.1| Crossover junction endodeoxyribonuclease RuvC [Cyanothece sp. PCC
           8801]
 gi|257059380|ref|YP_003137268.1| Crossover junction endodeoxyribonuclease RuvC [Cyanothece sp. PCC
           8802]
 gi|218166811|gb|ACK65548.1| Crossover junction endodeoxyribonuclease RuvC [Cyanothece sp. PCC
           8801]
 gi|256589546|gb|ACV00433.1| Crossover junction endodeoxyribonuclease RuvC [Cyanothece sp. PCC
           8802]
          Length = 162

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 70/149 (46%), Gaps = 9/149 (6%)

Query: 8   IGIDPGLRRTGWGIVDVAGDNLC-FVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           +GIDPGL   GW ++      +   +  G I +      A RL ++   + ++I+ ++P 
Sbjct: 6   LGIDPGLAIIGWAVLQGKETEIPQLIDYGIIETNKSLPTAARLLEIEGDMVEIIQEFQPA 65

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALAR----IPVSEYAPNTIKKAVIGVGHGD 122
             A+E  F N+   A    G  +A+ +++  + R    IP+  +  +   K  +G G  D
Sbjct: 66  AIAMEMPFFNRQIKAAG--GVIQAVGVINLVIYRETKQIPILLHQASW--KCHLGDGKAD 121

Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAIA 151
           KK++   +K L         D+ DA+AIA
Sbjct: 122 KKEVAARVKCLFDLPSLPIDDSVDAIAIA 150


>gi|307150321|ref|YP_003885705.1| Crossover junction endodeoxyribonuclease [Cyanothece sp. PCC 7822]
 gi|306980549|gb|ADN12430.1| Crossover junction endodeoxyribonuclease [Cyanothece sp. PCC 7822]
          Length = 162

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/163 (23%), Positives = 78/163 (47%), Gaps = 13/163 (7%)

Query: 4   SIRIIGIDPGLRRTGWGIVDVAGD-NLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
           S R +G+DPGL R GW ++++        +  GTI +  R     RL ++ + ++++++ 
Sbjct: 2   SKRWLGLDPGLARIGWAVLEIDEPLPAQLLDYGTIETSKRCPTPERLLEIEKDISEILQE 61

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALAR----IPVSEYAPNTIKKAVIGV 118
           ++P+  A+E  F  +   A    G  +A+ +L+  + R    +P+  +  +   K  +  
Sbjct: 62  FQPQAVAIEMPFFGRQIKAA--GGVIQALGVLNLVIYRELKILPILLHQSSW--KCYLDH 117

Query: 119 GHGDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSG 161
           G   K+++  +++ +         D  DA+ I    AY A SG
Sbjct: 118 GRATKQEVAEIIQNIFNLDSLPIDDTVDAIGI----AYAALSG 156


>gi|16332062|ref|NP_442790.1| Holliday juction resolvase RuvC [Synechocystis sp. PCC 6803]
 gi|6685944|sp|Q55506|RUVC_SYNY3 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|1001371|dbj|BAA10861.1| Holliday juction resolvase; RuvC [Synechocystis sp. PCC 6803]
          Length = 167

 Score = 45.1 bits (105), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 67/149 (44%), Gaps = 1/149 (0%)

Query: 6   RIIGIDPGLRRTGWGIVDVAGD-NLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           R +GIDPGL   GW I+D   D +   V  G I +    S   RL ++ + +  +++ + 
Sbjct: 9   RWLGIDPGLAIIGWAILDGQPDLSAHLVDYGIIETSKNLSTPERLVEIEQDIHVLLEEFS 68

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  A+E  F ++   A   + QA  +  L     +     +   +  K  +G G  +K 
Sbjct: 69  PQAIAMEMPFFSRQIKAAGGVMQALGVINLVIYREKSIQPVFLHQSSWKCHLGNGKANKA 128

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVC 153
           ++  M++           D+ DA+AIA+ 
Sbjct: 129 EVAAMVQNFFGLEDLPIDDSVDAIAIALA 157


>gi|172055297|ref|YP_001806624.1| putative RuvC-like Holliday junction resolvase [Cyanothece sp. ATCC
           51142]
 gi|171701578|gb|ACB54558.1| putative RuvC-like Holliday junction resolvase [Cyanothece sp. ATCC
           51142]
          Length = 216

 Score = 44.7 bits (104), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 1/90 (1%)

Query: 6   RIIGIDPGLRRTGWGIVD-VAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           R +GI P +   GW +++    +    V  G I +     L +RL ++   L +++  ++
Sbjct: 60  RWLGIKPSISNLGWAVIEGEPTEEPNMVDFGLIETDSHDPLPYRLGEIETDLREILVEYQ 119

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAIL 94
           P   A+EQ F+  +  +T KL Q   +  L
Sbjct: 120 PNHIAIEQPFIKAEYPSTTKLLQVLGVVNL 149


>gi|170077253|ref|YP_001733891.1| Holliday juction resolvase [Synechococcus sp. PCC 7002]
 gi|169884922|gb|ACA98635.1| Holliday juction resolvase [Synechococcus sp. PCC 7002]
          Length = 160

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 64/143 (44%), Gaps = 3/143 (2%)

Query: 6   RIIGIDPGLRRTGWGIVDVAGDNLC-FVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           R +GIDPGL   GW +++  G  L   +  G I +    S   RL ++ +  T+++  + 
Sbjct: 3   RWLGIDPGLAIIGWAVLEEQGQTLPQILDYGIIETAKDLSTPQRLLEIEQDYTEILGEFH 62

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSE-YAPNTIKKAVIGVGHGDK 123
           PE  A+E  F ++   A   + Q   I  L  +L  + +   Y   +  K  IG    DK
Sbjct: 63  PEAIAIEMPFFSRQIKAAGGVLQGLGILNLV-SLRELNIEPIYLHQSSWKCHIGNAKADK 121

Query: 124 KQIHMMLKMLMPESFFKGKDAAD 146
           +++  +++ +         D+ D
Sbjct: 122 REVATLVQSIFGMETMPIDDSVD 144


>gi|307149815|ref|YP_003890858.1| Holliday junction resolvasome endonuclease subunit-like protein
           [Cyanothece sp. PCC 7822]
 gi|306986615|gb|ADN18493.1| Holliday junction resolvasome endonuclease subunit-like protein
           [Cyanothece sp. PCC 7822]
          Length = 391

 Score = 43.1 bits (100), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 41/76 (53%), Gaps = 2/76 (2%)

Query: 6   RIIGIDPGLRRTGWGIVDVAGDNLC--FVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           R +GIDP L    W +++   D      +  GTI +  ++  + RL +L + L +++K +
Sbjct: 231 RTLGIDPALGTLRWAVLEPDDDYDLPRLLDYGTITTTPKRPTSQRLSELEQDLVEILKEF 290

Query: 64  RPEEAAVEQVFVNKDA 79
            P + A+E  ++N ++
Sbjct: 291 APSDVAIEIPYLNTES 306


>gi|226305768|ref|YP_002765728.1| hypothetical protein RER_22810 [Rhodococcus erythropolis PR4]
 gi|226184885|dbj|BAH32989.1| conserved hypothetical protein [Rhodococcus erythropolis PR4]
          Length = 185

 Score = 43.1 bits (100), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 32/58 (55%)

Query: 100 RIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYH 157
           +IPV E    T+KK   G G  DK+++   ++ L P +  +  + ADALA+A   A H
Sbjct: 105 KIPVVEVGATTLKKYATGDGRADKREVVNAMRDLWPHAKVRNDNEADALALATIGAMH 162


>gi|307591332|ref|YP_003900131.1| Holliday junction resolvasome endonuclease subunit-like protein
           [Cyanothece sp. PCC 7822]
 gi|306986186|gb|ADN18065.1| Holliday junction resolvasome endonuclease subunit-like protein
           [Cyanothece sp. PCC 7822]
          Length = 388

 Score = 42.4 bits (98), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 5/78 (6%)

Query: 6   RIIGIDPGLRRTGWGIVDVAGDNLC----FVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           R +GIDP L    W +++ A D+ C     +  GTI +  +   + RL +L + L  +++
Sbjct: 227 RTLGIDPALGTLRWAVLERA-DSECELPPLLDYGTITTTPKCPTSQRLSELEQDLVVLLR 285

Query: 62  NWRPEEAAVEQVFVNKDA 79
            + P E A+E  F+N D+
Sbjct: 286 EFCPTEVAIEIPFLNTDS 303


>gi|296169771|ref|ZP_06851386.1| possible gp67 [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295895565|gb|EFG75264.1| possible gp67 [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 205

 Score = 42.4 bits (98), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 29/58 (50%)

Query: 100 RIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYH 157
           RIP+   AP T  K   G G+ DK+ I   ++   P +     D ADAL +A   A+H
Sbjct: 109 RIPIVVVAPTTRAKWATGKGNADKRAILTTVRSWWPNTHIANHDQADALVLAAIGAFH 166


>gi|124516216|gb|EAY57724.1| probable crossover junction endodeoxyribonuclease (RuvC)
           [Leptospirillum rubarum]
          Length = 158

 Score = 41.2 bits (95), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 35/148 (23%), Positives = 68/148 (45%), Gaps = 3/148 (2%)

Query: 7   IIGIDPGLRRTGWGIVDVAG-DNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           ++G+DPGL  TG+ +++    D L  ++ GT+ +     ++ R+  L++ L  ++  +  
Sbjct: 1   MLGVDPGLAATGFAVLEGPSLDRLRVLAQGTVRTEPAFPVSRRIGILFDRLDGLLSEYPV 60

Query: 66  EEAAVEQVFVNKDAV-ATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           +  A+E  F  + +  A L LG    I  L      IP+   +P  +K  + G G   K+
Sbjct: 61  KGIALEDHFSRRASPGAGLMLGPVVGIVALLADRHGIPLLPISPRELKHRITGTGAASKE 120

Query: 125 QIHMMLKMLMPESFFKGKD-AADALAIA 151
            +   L + +      G     DA+ +A
Sbjct: 121 AVQRALSVWLGNGLRIGSTHEGDAMGLA 148


>gi|284928974|ref|YP_003421496.1| Holliday junction endonuclease RuvC [cyanobacterium UCYN-A]
 gi|284809433|gb|ADB95138.1| Holliday junction endonuclease RuvC [cyanobacterium UCYN-A]
          Length = 162

 Score = 40.8 bits (94), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 67/151 (44%), Gaps = 13/151 (8%)

Query: 8   IGIDPGLRRTGWGIVDVAGDNL-CFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           +GIDPGL  TGW I+      +   V  G I +  + S + RL ++   L +++  +   
Sbjct: 7   LGIDPGLAITGWAILKAHTKTIPLIVDYGVIQTSKKLSTSQRLLEIEHDLVELLNEFNFY 66

Query: 67  EAAVEQVFVNKDAVATLKL--GQARAIAILSPALARIPVSEYAPNTIKKAV----IGVGH 120
             ++E  F N+    T+K   G  +A+ +++    R   ++  P  + +A     IG G 
Sbjct: 67  GISIEMPFFNR----TIKAAGGVIQAVGVINLVCYR--ETQIQPVFLHQASWKRHIGSGR 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIA 151
             K  +   +  L         D+ DA+AIA
Sbjct: 121 ATKDSVAQTVSQLFNLQTIPIDDSVDAIAIA 151


>gi|206603016|gb|EDZ39496.1| Probable crossover junction endodeoxyribonuclease (RuvC)
           [Leptospirillum sp. Group II '5-way CG']
          Length = 158

 Score = 40.4 bits (93), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 34/148 (22%), Positives = 68/148 (45%), Gaps = 3/148 (2%)

Query: 7   IIGIDPGLRRTGWGIVDVAG-DNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           ++G+DPGL  TG+ +++    D L  ++ GT+ +     ++ R+  L++ L  ++  +  
Sbjct: 1   MLGVDPGLAATGFAVLEGPSLDRLRVLAQGTVRTDSTLPVSRRIGLLFDRLDALLSEYPV 60

Query: 66  EEAAVEQVFVNKDAV-ATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           +  A+E  F  + +  A L LG    I  L      +P+   +P  +K  + G G   K+
Sbjct: 61  KGIALEDHFSRRASPGAGLMLGPVVGIVALLADRHGVPLLPISPRELKHRITGTGAASKE 120

Query: 125 QIHMMLKMLMPESFFKGKD-AADALAIA 151
            +   L + +      G     DA+ +A
Sbjct: 121 AVQNALSVWLGAGLRIGSTHEGDAMGLA 148


>gi|251771976|gb|EES52548.1| probable crossover junction endodeoxyribonuclease (RuvC)
           [Leptospirillum ferrodiazotrophum]
          Length = 157

 Score = 40.0 bits (92), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 59/148 (39%), Gaps = 5/148 (3%)

Query: 8   IGIDPGLRRTGWGIVDVAG-DNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           +G+DPGL RTGW +V       L F   GTI +     L  R+  +   L + I+     
Sbjct: 1   MGVDPGLARTGWAVVSGESFQRLSFDDGGTIKTAAGGLLHERIGAICGELEEAIRRHGVS 60

Query: 67  EAAVEQVFVNKDA--VATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
             AVE  F  + A  V  L      A+A+L+    R+      P  +K  V G G   K 
Sbjct: 61  ALAVEDHFSRRSAPGVGHLLGPVIGAVALLA-FRNRLTFLLIPPKELKHRVTGTGEAGKA 119

Query: 125 QIHMMLKMLM-PESFFKGKDAADALAIA 151
            +   L     PE         DAL +A
Sbjct: 120 ALIRSLSFWFGPEIDIGTTHEGDALGLA 147


>gi|317506645|ref|ZP_07964436.1| hypothetical protein HMPREF9336_00806 [Segniliparus rugosus ATCC
           BAA-974]
 gi|316255077|gb|EFV14356.1| hypothetical protein HMPREF9336_00806 [Segniliparus rugosus ATCC
           BAA-974]
          Length = 208

 Score = 40.0 bits (92), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 31/52 (59%)

Query: 101 IPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESFFKGKDAADALAIAV 152
           +PV+  AP+T+KK  +G G+  K ++    + L PE   K  D ADA+ +A+
Sbjct: 119 VPVAVCAPSTLKKFAVGTGNAKKLEVFGAAQHLYPELVLKKDDEADAIFLAL 170


>gi|119472455|ref|ZP_01614554.1| Holliday junction nuclease [Alteromonadales bacterium TW-7]
 gi|119444892|gb|EAW26191.1| Holliday junction nuclease [Alteromonadales bacterium TW-7]
          Length = 85

 Score = 39.7 bits (91), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 32/73 (43%), Positives = 45/73 (61%), Gaps = 1/73 (1%)

Query: 94  LSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESFFKGKDAADALAIAVC 153
           +  A+A +PV EY+   IK+AV+G G  DK Q+  M+K ++        DAADALAIA+C
Sbjct: 1   MGAAMADLPVFEYSARQIKQAVVGNGGADKSQVQHMVKNILKLPGTPQADAADALAIAIC 60

Query: 154 HAYHANSGYYKIA 166
           HA H+     K+A
Sbjct: 61  HA-HSEQNLIKLA 72


>gi|325474387|gb|EGC77575.1| crossover junction endodeoxyribonuclease ruvC [Treponema denticola
           F0402]
          Length = 68

 Score = 39.7 bits (91), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 15/32 (46%), Positives = 24/32 (75%)

Query: 103 VSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLM 134
           V EYAPN+IKKAV G+   +K+Q+   +K+++
Sbjct: 3   VGEYAPNSIKKAVTGIAQAEKRQVQEAVKLIL 34


>gi|167464754|ref|ZP_02329843.1| crossover junction endodeoxyribonuclease RuvC [Paenibacillus
          larvae subsp. larvae BRL-230010]
          Length = 55

 Score = 38.1 bits (87), Expect = 0.43,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 27/51 (52%)

Query: 5  IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEG 55
          +RI+GIDPG+   G+G +D     L  V  G+I +        RL Q+YE 
Sbjct: 1  MRILGIDPGIAIVGFGFIDKVSSRLVPVQYGSIQTEAYTDPGLRLKQVYEA 51


>gi|156564173|ref|YP_001429683.1| RuvC [Bacillus phage 0305phi8-36]
 gi|154622870|gb|ABS83750.1| RuvC [Bacillus phage 0305phi8-36]
          Length = 177

 Score = 37.7 bits (86), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 77/181 (42%), Gaps = 23/181 (12%)

Query: 5   IRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +RI+GID  L  TG+ I D   GD +      T +     + + R+  L   L+ ++  W
Sbjct: 1   MRIMGIDASLSTTGYAIYDTEIGDFILIDKIRTSIKKATPTRSKRIQYLCAELSHIM-FW 59

Query: 64  RPEEAAV-EQVFVNKDAVATLKLGQAR-AIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
              +  V E ++V + + A L LG  R AI  L   L    +       +KKAV G G+ 
Sbjct: 60  NYVDVVVTEDIYVAQKSAA-LPLGMVRGAIEQLVYDLEFEGLHIIESTKMKKAVTGNGNA 118

Query: 122 DKKQIHMMLKMLMPESFF----------------KGKDAADALAIAVCHAYHANSGYYKI 165
           +K   +  LK +  +S                  K +D AD  A+ + HAY A+     I
Sbjct: 119 NKLLTYETLKEIYKDSPLVMEALGKELISDNSAKKNEDMAD--AVGLVHAYKADPSQAHI 176

Query: 166 A 166
           A
Sbjct: 177 A 177


>gi|39973233|ref|XP_368007.1| hypothetical protein [Magnaporthe oryzae 70-15]
 gi|145012725|gb|EDJ97379.1| predicted protein [Magnaporthe oryzae 70-15]
          Length = 234

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 9/96 (9%)

Query: 36  TIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNK--------DA-VATLKLG 86
           T  S + Q L  R+ Q Y+ ++    +W  + A V+  FVNK        DA ++ L+LG
Sbjct: 8   TKYSTIPQDLKARIKQSYDVISQAYTDWTKDHAQVKLEFVNKLLDLVPGPDAKLSVLELG 67

Query: 87  QARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
              A  +    LA +P +    N +  + +  G  +
Sbjct: 68  AGAATPVTEHVLATLPSARVTANDMSSSQVAAGKAN 103


>gi|297518840|ref|ZP_06937226.1| Holliday junction resolvase [Escherichia coli OP50]
          Length = 89

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 41/68 (60%)

Query: 89  RAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESFFKGKDAADAL 148
           R +AI++     +PV EYA   +K+ V+G+G  +K Q+  M++ L+        DAADAL
Sbjct: 1   RGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQVQHMVRTLLKLPANPQADAADAL 60

Query: 149 AIAVCHAY 156
           AIA+ H +
Sbjct: 61  AIAITHCH 68


>gi|270264843|ref|ZP_06193107.1| exonuclease V subunit alpha [Serratia odorifera 4Rx13]
 gi|270041141|gb|EFA14241.1| exonuclease V subunit alpha [Serratia odorifera 4Rx13]
          Length = 616

 Score = 36.2 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 3/69 (4%)

Query: 85  LGQARAIAILSP---ALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESFFKG 141
           L QA+A+ +L P     ARI   E  P+ +  A           + +ML+ L+PE+ F+G
Sbjct: 5   LEQAQALGVLRPLDLQFARIVAGEEEPDILLAAACLSAEAGAGHVCLMLEQLLPENLFEG 64

Query: 142 KDAADALAI 150
           +    A A+
Sbjct: 65  RQPELAQAV 73


>gi|303228468|ref|ZP_07315299.1| ATP-dependent DNA helicase RecQ [Veillonella atypica
           ACS-134-V-Col7a]
 gi|302516826|gb|EFL58737.1| ATP-dependent DNA helicase RecQ [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 610

 Score = 35.4 bits (80), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 5/56 (8%)

Query: 46  AFRLCQLYEGLTDVIKNWRP-EEAAVEQVFVNKDAVATLKLGQARAIAILSPALAR 100
           A +L Q Y G T    ++RP +EA VE +  N+D VA +  G  ++I    PAL +
Sbjct: 10  ALQLLQTYFGYT----SFRPAQEAPVESLLKNEDVVAIMPTGAGKSICFQIPALCK 61


>gi|291001333|ref|XP_002683233.1| predicted protein [Naegleria gruberi]
 gi|284096862|gb|EFC50489.1| predicted protein [Naegleria gruberi]
          Length = 3462

 Score = 34.7 bits (78), Expect = 4.6,   Method: Composition-based stats.
 Identities = 27/80 (33%), Positives = 36/80 (45%), Gaps = 20/80 (25%)

Query: 14   LRRTGW-----GIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQ----------LYEGLTD 58
            L++ GW      I+ V+G     +S  +I S V QS  F LC+          LY  L  
Sbjct: 1825 LQQVGWQEWLLNIICVSG-----ISDASIPSDVGQSAQFELCKDIVIELIAILLYHSLKT 1879

Query: 59   VIKNWRPEEAAVEQVFVNKD 78
            V K WR  E  + QV + KD
Sbjct: 1880 VKKGWRDIEDTICQVILLKD 1899


>gi|265763460|ref|ZP_06092028.1| predicted protein [Bacteroides sp. 2_1_16]
 gi|299145844|ref|ZP_07038912.1| putative crossover junction endodeoxyribonuclease RuvC [Bacteroides
           sp. 3_1_23]
 gi|263256068|gb|EEZ27414.1| predicted protein [Bacteroides sp. 2_1_16]
 gi|298516335|gb|EFI40216.1| putative crossover junction endodeoxyribonuclease RuvC [Bacteroides
           sp. 3_1_23]
          Length = 166

 Score = 34.3 bits (77), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 1/76 (1%)

Query: 52  LYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAP-NT 110
            Y+ L + I+ +  +    E V V+K  +A  KL + R I  L  A   +P  ++   +T
Sbjct: 58  FYDTLVEFIQKYNIKLIIAEDVCVSKHFIAARKLSEFRGILYLICAQLGLPEPKFINVST 117

Query: 111 IKKAVIGVGHGDKKQI 126
           +KK   G G  DKK++
Sbjct: 118 VKKWATGDGKADKKKM 133


>gi|323456534|gb|EGB12401.1| hypothetical protein AURANDRAFT_19900 [Aureococcus anophagefferens]
          Length = 191

 Score = 33.9 bits (76), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 11/80 (13%)

Query: 52  LYEGLTDVIKNWR---PEE---AAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSE 105
           LYEGL D ++      P E    A+ +V   +D +   + G  + +A L P L+R+   E
Sbjct: 50  LYEGLVDAVETLELTAPSEIQKLAIPRVLGREDVMFAAETGSGKTLAYLLPVLSRLKAEE 109

Query: 106 YAPNTIKKAVIGVGHGDKKQ 125
           +A  +      G G GD +Q
Sbjct: 110 FAALS-----AGDGLGDLRQ 124


>gi|228983127|ref|ZP_04143386.1| Crossover junction endodeoxyribonuclease ruvC [Bacillus
           thuringiensis Bt407]
 gi|228777310|gb|EEM25618.1| Crossover junction endodeoxyribonuclease ruvC [Bacillus
           thuringiensis Bt407]
          Length = 163

 Score = 33.5 bits (75), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 27/141 (19%), Positives = 56/141 (39%), Gaps = 10/141 (7%)

Query: 23  DVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVN------ 76
           D+  +    + +GT+ +   + L  RL  +YE +      +  +  A E++F N      
Sbjct: 9   DIDTNQYMKLDTGTLKTKSSELLEDRLLTIYEMIKTYNLKYNTDIIACEKLFYNPKQKND 68

Query: 77  --KDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLM 134
               + + +       +  L      + + ++ P T+KK V G G   K+ +   ++   
Sbjct: 69  NRNKSASIMTTNMVTGVVFLVAGELGLWIKDFVPGTVKKHVAGYGRATKEDLQKAIEDFC 128

Query: 135 PESFFKGKD--AADALAIAVC 153
            +   K K     DA+ IA+ 
Sbjct: 129 EQHGIKAKTNHETDAIGIALT 149


Searching..................................................done


Results from round 2




>gi|254780554|ref|YP_003064967.1| Holliday junction resolvase [Candidatus Liberibacter asiaticus str.
           psy62]
 gi|254040231|gb|ACT57027.1| Holliday junction resolvase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 169

 Score =  252 bits (645), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 169/169 (100%), Positives = 169/169 (100%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI
Sbjct: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
           KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH
Sbjct: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQD 169
           GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQD
Sbjct: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQD 169


>gi|323702067|ref|ZP_08113735.1| crossover junction endodeoxyribonuclease RuvC [Desulfotomaculum
           nigrificans DSM 574]
 gi|323532949|gb|EGB22820.1| crossover junction endodeoxyribonuclease RuvC [Desulfotomaculum
           nigrificans DSM 574]
          Length = 163

 Score =  247 bits (631), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 62/157 (39%), Positives = 97/157 (61%), Gaps = 1/157 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + I+GIDPG   TG+G+++  G++   V    + +    SL  RL  LY+ +  +I  ++
Sbjct: 1   MIILGIDPGTAITGYGVLEFKGNSYKPVDYNCLRTGPELSLDLRLKNLYQEINRIIAKYQ 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  AVE++F NK+    L +G AR +A+L+ A A IPV+EY P  +K+AV G G  DK+
Sbjct: 61  PQYMAVEELFFNKNVRTALAVGHARGVALLAGANAGIPVAEYTPLQVKQAVTGYGKADKQ 120

Query: 125 QIHMMLKMLMPESF-FKGKDAADALAIAVCHAYHANS 160
           Q+  M+K L+      K  D ADALA+A+CHA+ ++S
Sbjct: 121 QVQFMVKTLLSLPEVPKPDDVADALAVAICHAHWSSS 157


>gi|158320756|ref|YP_001513263.1| crossover junction endodeoxyribonuclease RuvC [Alkaliphilus
           oremlandii OhILAs]
 gi|167012675|sp|A8MHI5|RUVC_ALKOO RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|158140955|gb|ABW19267.1| crossover junction endodeoxyribonuclease RuvC [Alkaliphilus
           oremlandii OhILAs]
          Length = 164

 Score =  243 bits (622), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 57/156 (36%), Positives = 87/156 (55%), Gaps = 1/156 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + I+GIDPGL   G+GI++  G+    +  G I +    +   RL  +Y  L  +I  + 
Sbjct: 1   MIILGIDPGLAILGYGIINYEGNRFKVLDYGAITTPSTMATPERLKTIYRELDRIITEYN 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  A+E++F N +    L +G AR +A+LS A     + EY P  +K+ V+G G  DK 
Sbjct: 61  PDTVAIEELFFNTNVKTALLVGHARGVAVLSAANHNKEIFEYTPLQVKQGVVGYGRADKS 120

Query: 125 QIHMMLKMLMPESF-FKGKDAADALAIAVCHAYHAN 159
           QI  M+K L+  +   K  D ADALA+A+CHA+  N
Sbjct: 121 QIQQMVKTLLNLTKVPKPDDVADALAVAICHAHTGN 156


>gi|291612982|ref|YP_003523139.1| crossover junction endodeoxyribonuclease RuvC [Sideroxydans
           lithotrophicus ES-1]
 gi|291583094|gb|ADE10752.1| crossover junction endodeoxyribonuclease RuvC [Sideroxydans
           lithotrophicus ES-1]
          Length = 183

 Score =  243 bits (622), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 76/167 (45%), Positives = 106/167 (63%), Gaps = 2/167 (1%)

Query: 2   RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           + SIRI+GIDPGLR TG+G+VD  G  L +V+SG I +     L  RL  +   L +VI 
Sbjct: 9   KSSIRILGIDPGLRITGFGVVDKEGQQLHYVASGCIKTP-DGELPERLKVILASLGEVIA 67

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
             +PE+ AVE+VFVN +  +TL LGQAR  AI +   A +PV+EY    +K+AV+G GH 
Sbjct: 68  QHKPEQVAVEKVFVNVNPQSTLLLGQARGAAICAAVQADLPVAEYTALQVKQAVVGNGHA 127

Query: 122 DKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
           DK+Q+  M++ L+  S     DAADALA A+CHA+    G   +A++
Sbjct: 128 DKEQVQAMVQRLLKLSGTPSPDAADALACAICHAH-GGMGMGALATK 173


>gi|134299517|ref|YP_001113013.1| crossover junction endodeoxyribonuclease RuvC [Desulfotomaculum
           reducens MI-1]
 gi|172044283|sp|A4J535|RUVC_DESRM RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|134052217|gb|ABO50188.1| Holliday junction endonuclease RuvC [Desulfotomaculum reducens
           MI-1]
          Length = 163

 Score =  242 bits (620), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 65/162 (40%), Positives = 102/162 (62%), Gaps = 1/162 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + I+GIDPG   TG+G+++  G+    ++   + +     L  RL +LY+GL D+IK ++
Sbjct: 1   MIILGIDPGTAITGYGVIEFIGNRYKPITYSCLRTEPDLPLDLRLKKLYQGLMDIIKRYQ 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  AVE++F NK+A   L +G AR IA+L+ A + IPV+EY P  +K+AV G G  +K+
Sbjct: 61  PDCMAVEELFFNKNARTALAVGHARGIALLAGANSSIPVAEYTPLQVKQAVTGYGKAEKQ 120

Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHANSGYYKI 165
           QI  M+K L+      K  D ADALA+A+CHA  +++   +I
Sbjct: 121 QIQFMVKTLLSLPEIPKPDDVADALAVAICHAQWSSTFGGRI 162


>gi|95931132|ref|ZP_01313857.1| crossover junction endodeoxyribonuclease RuvC [Desulfuromonas
           acetoxidans DSM 684]
 gi|95132822|gb|EAT14496.1| crossover junction endodeoxyribonuclease RuvC [Desulfuromonas
           acetoxidans DSM 684]
          Length = 175

 Score =  242 bits (619), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 73/163 (44%), Positives = 109/163 (66%), Gaps = 1/163 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPG R TG+GI+D  G+ L  V +G I +    +L  RL ++++GL ++I  +R
Sbjct: 1   MRILGIDPGTRITGYGIIDQQGNRLRHVDNGAIYTQSSDALPKRLKKIHDGLCEIILQYR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  A+EQVFV K+A++ LKLGQAR  AI++   A +PVSEY+   +K AV+G G   K 
Sbjct: 61  PDAVAIEQVFVAKNALSALKLGQARGAAIVAGVNADLPVSEYSALQVKSAVVGYGKAAKS 120

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHAN-SGYYKIA 166
           Q+  M+K LM       +DA+DALA+A+CHA+ A+ +G  + A
Sbjct: 121 QVQQMVKALMNLPEVAQEDASDALAVAICHAHSAHVNGQVRQA 163


>gi|78221964|ref|YP_383711.1| Holliday junction resolvase [Geobacter metallireducens GS-15]
 gi|123742916|sp|Q39XN8|RUVC_GEOMG RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|78193219|gb|ABB30986.1| Holliday junction endonuclease RuvC [Geobacter metallireducens
           GS-15]
          Length = 164

 Score =  241 bits (617), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 71/155 (45%), Positives = 102/155 (65%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPG R TG+GI++  G+ L  V +G I +   +  A RL +++EGL +VI  +R
Sbjct: 1   MRVLGIDPGSRITGYGIIEKVGNRLVHVDNGAIHTDNHKEFALRLHRIFEGLCEVIAEYR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  AVEQVF+  +A + LKLGQAR  AI++   A +PVSEY    +K+AV+G GH  K+
Sbjct: 61  PDAMAVEQVFLAHNAQSALKLGQARGAAIVAGVNAGLPVSEYTAMQVKQAVVGYGHARKE 120

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHAN 159
           Q+  M+K L+        DA+DALA+AVCHA  A 
Sbjct: 121 QVQQMVKSLLNLPEIAQADASDALAVAVCHANSAG 155


>gi|302879790|ref|YP_003848354.1| crossover junction endodeoxyribonuclease RuvC [Gallionella
           capsiferriformans ES-2]
 gi|302582579|gb|ADL56590.1| crossover junction endodeoxyribonuclease RuvC [Gallionella
           capsiferriformans ES-2]
          Length = 190

 Score =  241 bits (616), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 77/167 (46%), Positives = 107/167 (64%), Gaps = 2/167 (1%)

Query: 2   RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           R SIRI+GIDPGLR TG+G++D  G  L +V+SG I +     L  RL  +   L  VI 
Sbjct: 16  RASIRILGIDPGLRITGFGVIDKVGQQLHYVASGCIKTPAG-DLPERLKVILNSLGVVIT 74

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
             +P++AAVE+VFVN +  +TL LGQAR  AI +  LA +PV EY    +K+AV+G GH 
Sbjct: 75  QHQPDQAAVEKVFVNVNPQSTLLLGQARGAAICAAVLANLPVGEYTALQVKQAVVGNGHA 134

Query: 122 DKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
           DK+Q+ +M++ L+  S     DAADALA A+CHA+    G   +A++
Sbjct: 135 DKEQVQLMVQRLLKLSGTPSPDAADALACAICHAH-GGLGLGALATK 180


>gi|315645784|ref|ZP_07898905.1| crossover junction endodeoxyribonuclease RuvC [Paenibacillus vortex
           V453]
 gi|315278545|gb|EFU41859.1| crossover junction endodeoxyribonuclease RuvC [Paenibacillus vortex
           V453]
          Length = 167

 Score =  240 bits (614), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 57/154 (37%), Positives = 90/154 (58%), Gaps = 1/154 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPG+   G+G VD  G  +  V  G I +        RL  +YEG+  +I  + 
Sbjct: 1   MRILGIDPGIAIVGFGFVDKVGSKVTPVQYGCIQTEAHTPDEERLLHVYEGMQQLIDKYE 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           PE  A E++F N++    + + QAR + IL+     +P++EY P  +K+A++G G  +KK
Sbjct: 61  PEAVAFEKLFFNRNVTTAMSVSQARGVLILAAIQRGLPIAEYTPMQVKQAIVGYGKAEKK 120

Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYH 157
           Q+  M++M +   S  K  D ADALA+A+CHA+ 
Sbjct: 121 QVQEMVRMFLKLQSIPKPDDVADALAVAICHAHS 154


>gi|261405407|ref|YP_003241648.1| Holliday junction resolvase [Paenibacillus sp. Y412MC10]
 gi|329926785|ref|ZP_08281193.1| crossover junction endodeoxyribonuclease RuvC [Paenibacillus sp.
           HGF5]
 gi|261281870|gb|ACX63841.1| crossover junction endodeoxyribonuclease RuvC [Paenibacillus sp.
           Y412MC10]
 gi|328938985|gb|EGG35353.1| crossover junction endodeoxyribonuclease RuvC [Paenibacillus sp.
           HGF5]
          Length = 167

 Score =  240 bits (613), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 57/154 (37%), Positives = 90/154 (58%), Gaps = 1/154 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPG+   G+G VD  G  +  V  G I +        RL  +YEG+  +I  + 
Sbjct: 1   MRILGIDPGIAIVGFGFVDKVGSKVTPVQYGCIQTEAHTPDEERLHHVYEGMLQLIDKYE 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           PE  A E++F N++    + + QAR + IL+     +P++EY P  +K+A++G G  +KK
Sbjct: 61  PEAVAFEKLFFNRNVTTAMSVSQARGVLILAAVQRGLPIAEYTPMQVKQAIVGYGKAEKK 120

Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYH 157
           Q+  M++M +   S  K  D ADALA+A+CHA+ 
Sbjct: 121 QVQEMVRMFLKLQSIPKPDDVADALAVAICHAHS 154


>gi|269797653|ref|YP_003311553.1| crossover junction endodeoxyribonuclease RuvC [Veillonella parvula
           DSM 2008]
 gi|282850098|ref|ZP_06259480.1| crossover junction endodeoxyribonuclease RuvC [Veillonella parvula
           ATCC 17745]
 gi|294793312|ref|ZP_06758457.1| crossover junction endodeoxyribonuclease RuvC [Veillonella sp.
           6_1_27]
 gi|294795134|ref|ZP_06760268.1| crossover junction endodeoxyribonuclease RuvC [Veillonella sp.
           3_1_44]
 gi|269094282|gb|ACZ24273.1| crossover junction endodeoxyribonuclease RuvC [Veillonella parvula
           DSM 2008]
 gi|282580287|gb|EFB85688.1| crossover junction endodeoxyribonuclease RuvC [Veillonella parvula
           ATCC 17745]
 gi|294453926|gb|EFG22301.1| crossover junction endodeoxyribonuclease RuvC [Veillonella sp.
           3_1_44]
 gi|294455743|gb|EFG24108.1| crossover junction endodeoxyribonuclease RuvC [Veillonella sp.
           6_1_27]
          Length = 164

 Score =  239 bits (612), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 62/161 (38%), Positives = 97/161 (60%), Gaps = 1/161 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RIIGIDPG    G+GI+DV G  L  V+ G I +    + + RL  L+  L+D+++ +R
Sbjct: 1   MRIIGIDPGTAICGYGIIDVKGSKLTPVAYGAITTPKELTDSQRLEILFNDLSDLLEEYR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P++  VE++F N++    +K+GQAR + +L+    RIP+ EY P  IK+AV G G  DK 
Sbjct: 61  PDKFGVEELFFNRNVTTAIKVGQARGVILLAAEQQRIPIYEYTPLQIKQAVTGYGKADKN 120

Query: 125 QIHMMLKMLMP-ESFFKGKDAADALAIAVCHAYHANSGYYK 164
           Q+  M   ++      K  D ADALA+A+C A+ +++   K
Sbjct: 121 QVIYMTMNILGIREKIKPDDTADALAVAICTAHSSHNDRLK 161


>gi|39996177|ref|NP_952128.1| Holliday junction resolvase [Geobacter sulfurreducens PCA]
 gi|81702837|sp|Q74E88|RUVC_GEOSL RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|39982942|gb|AAR34401.1| crossover junction endodeoxyribonuclease RuvC [Geobacter
           sulfurreducens PCA]
 gi|298505191|gb|ADI83914.1| crossover junction endodeoxyribonuclease RuvC [Geobacter
           sulfurreducens KN400]
          Length = 164

 Score =  239 bits (612), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 72/154 (46%), Positives = 103/154 (66%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPG R TG+GI++  G+ L  V +G I +   +  A RL ++YEGL+ VI+ +R
Sbjct: 1   MRVLGIDPGSRITGYGIIEKIGNRLVHVDNGAIHTDSHREFALRLHKIYEGLSRVIEEYR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  AVEQVF+  +A + LKLGQAR  AI++   A +PVSEY    +K+AV+G GH  K+
Sbjct: 61  PDAMAVEQVFLAHNAQSALKLGQARGAAIVAGVSAGLPVSEYTAMQVKQAVVGYGHARKE 120

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHA 158
           Q+  M+K L+        DA+DALA+AVCHA  A
Sbjct: 121 QVQQMVKSLLNLPEIAQADASDALAVAVCHANSA 154


>gi|121599355|ref|YP_991619.1| Holliday junction resolvase [Burkholderia mallei SAVP1]
 gi|121228165|gb|ABM50683.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia mallei
           SAVP1]
          Length = 284

 Score =  239 bits (611), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 71/159 (44%), Positives = 105/159 (66%), Gaps = 1/159 (0%)

Query: 2   RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           R S+RI+GIDPGLR TG+G++DV+G  L +V+SG I +     L  RL  +Y+G++ +I+
Sbjct: 102 RFSMRILGIDPGLRVTGFGVIDVSGHQLAYVASGVIKTPT-ADLPTRLGTIYDGVSTLIR 160

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
              P++AA+E+VFVN +  +TL LGQAR  AI       +PV+EY    +K+AV+G G  
Sbjct: 161 EHTPDQAAIEKVFVNVNPQSTLLLGQARGAAICGLVSGGLPVAEYTALQLKQAVVGYGRA 220

Query: 122 DKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
            K+Q+  M+  L+  S   G DAADAL +A+CHA+  N+
Sbjct: 221 TKEQMQEMVARLLSLSGRPGTDAADALGMAICHAHGGNT 259


>gi|313894587|ref|ZP_07828150.1| crossover junction endodeoxyribonuclease RuvC [Veillonella sp. oral
           taxon 158 str. F0412]
 gi|313440777|gb|EFR59206.1| crossover junction endodeoxyribonuclease RuvC [Veillonella sp. oral
           taxon 158 str. F0412]
          Length = 164

 Score =  239 bits (610), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 62/161 (38%), Positives = 98/161 (60%), Gaps = 1/161 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RIIGIDPG    G+GI+DV G  L  V+ G I +    + + RL  L+ GL+D+++ ++
Sbjct: 1   MRIIGIDPGTAICGYGIIDVKGSKLTPVAYGAITTPKELTDSQRLEILFNGLSDILEEYK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P++  VE++F N++    +K+GQAR + +L+    RIP+ EY P  IK+AV G G  DK 
Sbjct: 61  PDKFGVEELFFNRNVTTAIKVGQARGVILLAAEQQRIPIYEYTPLQIKQAVTGYGKADKN 120

Query: 125 QIHMMLKMLMP-ESFFKGKDAADALAIAVCHAYHANSGYYK 164
           Q+  M   ++      K  D ADALA+A+C A+ +++   K
Sbjct: 121 QVIYMTMNILGIREKIKPDDIADALAVAICTAHSSHNDRLK 161


>gi|124383616|ref|YP_001027115.1| Holliday junction resolvase [Burkholderia mallei NCTC 10229]
 gi|124291636|gb|ABN00905.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia mallei
           NCTC 10229]
          Length = 275

 Score =  239 bits (610), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 71/159 (44%), Positives = 105/159 (66%), Gaps = 1/159 (0%)

Query: 2   RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           R S+RI+GIDPGLR TG+G++DV+G  L +V+SG I +     L  RL  +Y+G++ +I+
Sbjct: 93  RFSMRILGIDPGLRVTGFGVIDVSGHQLAYVASGVIKTPT-ADLPTRLGTIYDGVSTLIR 151

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
              P++AA+E+VFVN +  +TL LGQAR  AI       +PV+EY    +K+AV+G G  
Sbjct: 152 EHTPDQAAIEKVFVNVNPQSTLLLGQARGAAICGLVSGGLPVAEYTALQLKQAVVGYGRA 211

Query: 122 DKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
            K+Q+  M+  L+  S   G DAADAL +A+CHA+  N+
Sbjct: 212 TKEQMQEMVARLLSLSGRPGTDAADALGMAICHAHGGNT 250


>gi|163758806|ref|ZP_02165893.1| crossover junction endodeoxyribonuclease RuvC [Hoeflea
           phototrophica DFL-43]
 gi|162284096|gb|EDQ34380.1| crossover junction endodeoxyribonuclease RuvC [Hoeflea
           phototrophica DFL-43]
          Length = 168

 Score =  239 bits (610), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 106/168 (63%), Positives = 133/168 (79%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M ++IRIIG+DPGLR TGWG++D  G++L FV+SGT+ S  +  LA RL QLYEGL  VI
Sbjct: 1   MAETIRIIGVDPGLRNTGWGVIDSTGNSLRFVASGTVKSDNKLDLASRLNQLYEGLEGVI 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
            + RP EAAVE  FVNKDA ATLKLGQAR IA+L+PA A + V+EYAPN +KKAVIGVGH
Sbjct: 61  HSHRPFEAAVENTFVNKDATATLKLGQARGIAMLAPARAGLRVAEYAPNAVKKAVIGVGH 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
           GDKKQI MM+KML+P++ F    AADALAIA+CHA+H  S  +++A++
Sbjct: 121 GDKKQILMMVKMLIPKATFDSDHAADALAIAICHAHHRTSPAWRMAAE 168


>gi|83652274|gb|ABC36337.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
           thailandensis E264]
          Length = 312

 Score =  239 bits (610), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 71/159 (44%), Positives = 105/159 (66%), Gaps = 1/159 (0%)

Query: 2   RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           R S+RI+GIDPGLR TG+G++DV+G  L +V+SG I +     L  RL  +Y+G++ +I+
Sbjct: 130 RFSMRILGIDPGLRVTGFGVIDVSGHRLAYVASGVIKTPT-ADLPTRLGTIYDGVSTLIR 188

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
              P++AA+E+VFVN +  +TL LGQAR  AI       +PV+EY    +K+AV+G G  
Sbjct: 189 EHTPDQAAIEKVFVNVNPQSTLLLGQARGAAICGLVSGGLPVAEYTALQLKQAVVGYGRA 248

Query: 122 DKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
            K+Q+  M+  L+  S   G DAADAL +A+CHA+  N+
Sbjct: 249 TKEQMQEMVARLLSLSGLPGTDAADALGMAICHAHGGNT 287


>gi|288957818|ref|YP_003448159.1| crossover junction endodeoxyribonuclease [Azospirillum sp. B510]
 gi|288910126|dbj|BAI71615.1| crossover junction endodeoxyribonuclease [Azospirillum sp. B510]
          Length = 352

 Score =  239 bits (610), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 84/156 (53%), Positives = 116/156 (74%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPGLR TGWGI+DVAG+ L  V+ G + S  R  LA RL QL++ L+ V++ + 
Sbjct: 1   MRLLGIDPGLRHTGWGIIDVAGNRLSHVADGAVHSDDRCPLAERLLQLHDALSAVVERYH 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+EAAVE+ FVN +AV+TLKLGQARA+A+L PA A + V+EYA N +KKAV+G G  +K 
Sbjct: 61  PDEAAVEETFVNSNAVSTLKLGQARAVALLVPAQAGLAVAEYANNMVKKAVVGQGRAEKA 120

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           Q+  M+++L+P       DAADALA+A+CHA+H  S
Sbjct: 121 QVQTMVRLLLPGCGIGTPDAADALAVAICHAHHRAS 156


>gi|254191518|ref|ZP_04898021.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
           pseudomallei Pasteur 52237]
 gi|157939189|gb|EDO94859.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
           pseudomallei Pasteur 52237]
          Length = 269

 Score =  239 bits (610), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 71/159 (44%), Positives = 105/159 (66%), Gaps = 1/159 (0%)

Query: 2   RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           R S+RI+GIDPGLR TG+G++DV+G  L +V+SG I +     L  RL  +Y+G++ +I+
Sbjct: 87  RFSMRILGIDPGLRVTGFGVIDVSGHQLAYVASGVIKTPT-ADLPTRLGTIYDGVSTLIR 145

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
              P++AA+E+VFVN +  +TL LGQAR  AI       +PV+EY    +K+AV+G G  
Sbjct: 146 EHTPDQAAIEKVFVNVNPQSTLLLGQARGAAICGLVSGGLPVAEYTALQLKQAVVGYGRA 205

Query: 122 DKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
            K+Q+  M+  L+  S   G DAADAL +A+CHA+  N+
Sbjct: 206 TKEQMQEMVARLLSLSGRPGTDAADALGMAICHAHGGNT 244


>gi|303241605|ref|ZP_07328104.1| crossover junction endodeoxyribonuclease RuvC [Acetivibrio
           cellulolyticus CD2]
 gi|302590825|gb|EFL60574.1| crossover junction endodeoxyribonuclease RuvC [Acetivibrio
           cellulolyticus CD2]
          Length = 188

 Score =  238 bits (609), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 57/162 (35%), Positives = 92/162 (56%), Gaps = 2/162 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + I+GIDPG   TG+G+V   G+    V  G I +        RL  L++ L ++I   +
Sbjct: 26  MIILGIDPGFAITGYGVVKYEGNKFSVVDYGAITTESSMEFPKRLLYLHDSLKELISRHK 85

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  ++E++F NK+    L +G  R +A+L+ A + I V EY P  +K++V+G G  +K 
Sbjct: 86  PDAISIEELFFNKNIKTALTVGHGRGVAVLAAAESGIDVYEYTPLQVKQSVVGYGRAEKA 145

Query: 125 QIHMMLKMLMPES-FFKGKDAADALAIAVCHAY-HANSGYYK 164
           Q+  M+K+++      K  D ADALAIA+CH + H  +G  K
Sbjct: 146 QVQQMIKVILNLPKIPKPDDVADALAIAICHGHSHRMAGLTK 187


>gi|238019730|ref|ZP_04600156.1| hypothetical protein VEIDISOL_01605 [Veillonella dispar ATCC 17748]
 gi|237863771|gb|EEP65061.1| hypothetical protein VEIDISOL_01605 [Veillonella dispar ATCC 17748]
          Length = 164

 Score =  238 bits (609), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 61/161 (37%), Positives = 97/161 (60%), Gaps = 1/161 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RIIGIDPG    G+GI+DV G  L  V+ G I +    + + RL  L+  L+D+++ ++
Sbjct: 1   MRIIGIDPGTAICGYGIIDVKGSKLTPVAYGAITTPKELTDSQRLEILFNDLSDILEEFK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P++  VE++F N++    +K+GQAR + +L+    RIP+ EY P  IK+AV G G  DK 
Sbjct: 61  PDKFGVEELFFNRNVTTAIKVGQARGVILLAAEQQRIPIYEYTPLQIKQAVTGYGKADKN 120

Query: 125 QIHMMLKMLMP-ESFFKGKDAADALAIAVCHAYHANSGYYK 164
           Q+  M   ++      K  D ADALA+A+C A+ +++   K
Sbjct: 121 QVIYMTMNILGIREKIKPDDTADALAVAICTAHSSHNDRLK 161


>gi|307266571|ref|ZP_07548103.1| crossover junction endodeoxyribonuclease RuvC [Thermoanaerobacter
           wiegelii Rt8.B1]
 gi|306918425|gb|EFN48667.1| crossover junction endodeoxyribonuclease RuvC [Thermoanaerobacter
           wiegelii Rt8.B1]
          Length = 165

 Score =  238 bits (608), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 56/156 (35%), Positives = 95/156 (60%), Gaps = 1/156 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPG+   G+GI+D   +    +  G + +      A RL  +Y G+  +IK++R
Sbjct: 1   MRVLGIDPGIAIMGYGIIDYKSNKFTVIDYGAVTTKAGIDKALRLHDIYNGIISLIKSYR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  A+E++F NK+A   + +G++R ++IL+   + I V EY P  +K+AV+G G  DK 
Sbjct: 61  PDVVAIEELFYNKNAKTVITIGESRGVSILAAVNSGIKVFEYTPLQVKQAVVGYGRADKY 120

Query: 125 QIHMMLKMLMPES-FFKGKDAADALAIAVCHAYHAN 159
           Q+  M+++L+      K  D ADALA+A+CH +  N
Sbjct: 121 QVQQMVRVLLNLEDVPKPDDVADALAVAICHCHSNN 156


>gi|76580596|gb|ABA50071.1| crossover junction endodeoxyribonuclease [Burkholderia pseudomallei
           1710b]
          Length = 275

 Score =  238 bits (608), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 71/159 (44%), Positives = 105/159 (66%), Gaps = 1/159 (0%)

Query: 2   RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           R S+RI+GIDPGLR TG+G++DV+G  L +V+SG I +     L  RL  +Y+G++ +I+
Sbjct: 93  RFSMRILGIDPGLRVTGFGVIDVSGHQLAYVASGVIKTPT-ADLPTRLGTIYDGVSTLIR 151

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
              P++AA+E+VFVN +  +TL LGQAR  AI       +PV+EY    +K+AV+G G  
Sbjct: 152 EHTPDQAAIEKVFVNVNPQSTLLLGQARGAAICGLVSGGLPVAEYTALQLKQAVVGYGRA 211

Query: 122 DKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
            K+Q+  M+  L+  S   G DAADAL +A+CHA+  N+
Sbjct: 212 TKEQMQEMVARLLSLSGRPGTDAADALGMAICHAHGGNT 250


>gi|148263483|ref|YP_001230189.1| Holliday junction resolvase [Geobacter uraniireducens Rf4]
 gi|189046068|sp|A5G9Y4|RUVC_GEOUR RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|146396983|gb|ABQ25616.1| crossover junction endodeoxyribonuclease RuvC [Geobacter
           uraniireducens Rf4]
          Length = 171

 Score =  238 bits (608), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 66/162 (40%), Positives = 103/162 (63%), Gaps = 1/162 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++I+GIDPG R TG+G++   G+ L  V +G I +   +    RL ++Y GL ++I+ +R
Sbjct: 1   MKILGIDPGSRITGYGVISKEGNRLIHVDNGAIFTDKAKDFPARLERIYRGLAEIIETYR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  AVE +F + +  + LKLGQAR  AI++  +A +PV EY    +K+AV+G G   K+
Sbjct: 61  PDAVAVENIFFSNNVQSALKLGQARGAAIVAGVIAGLPVFEYTALQVKQAVVGNGKAAKQ 120

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHA-NSGYYKI 165
           Q+  M+K+L+       +DA+DALA+AVCHA  +  SG  KI
Sbjct: 121 QVQQMIKVLLNLPEIAQEDASDALAVAVCHANSSVLSGMLKI 162


>gi|222055418|ref|YP_002537780.1| crossover junction endodeoxyribonuclease RuvC [Geobacter sp.
           FRC-32]
 gi|254767474|sp|B9LZC6|RUVC_GEOSF RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|221564707|gb|ACM20679.1| crossover junction endodeoxyribonuclease RuvC [Geobacter sp.
           FRC-32]
          Length = 173

 Score =  238 bits (608), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 61/153 (39%), Positives = 97/153 (63%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++I+GIDPG R TG+GIV   G+ L  V +G I +   +    RL ++Y  L+++I+ +R
Sbjct: 1   MKILGIDPGSRITGYGIVTKEGNRLIHVDNGAIFTDSAKDFPSRLKRIYGSLSEIIETYR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  AVE +F + +  + LKLGQAR  AI++   A + V EY    +K+AV+G G   K+
Sbjct: 61  PDAVAVENIFFSNNVQSALKLGQARGAAIVAGVNAGLDVFEYTALQVKQAVVGNGKAAKQ 120

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYH 157
           Q+  M+K+L+       +DA+DALA+A+CHA+ 
Sbjct: 121 QVQQMIKVLLNLPEIAQEDASDALAVAICHAHS 153


>gi|326390111|ref|ZP_08211672.1| crossover junction endodeoxyribonuclease RuvC [Thermoanaerobacter
           ethanolicus JW 200]
 gi|325993759|gb|EGD52190.1| crossover junction endodeoxyribonuclease RuvC [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 165

 Score =  237 bits (607), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 56/156 (35%), Positives = 94/156 (60%), Gaps = 1/156 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPG+   G+GI+D   +    +  G + +      A RL  +Y G+  +IK++ 
Sbjct: 1   MRVLGIDPGIAIMGYGIIDYKSNKFTVIDYGAVTTKAGIDKALRLHDIYNGIISLIKSYS 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  A+E++F NK+A   + +G++R ++IL+   + I V EY P  +K+AV+G G  DK 
Sbjct: 61  PDVVAIEELFYNKNAKTVITIGESRGVSILAAVNSGIKVFEYTPLQVKQAVVGYGRADKY 120

Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHAN 159
           Q+  M+K+L+      K  D ADALA+A+CH +  N
Sbjct: 121 QVQQMVKVLLNLEEIPKPDDVADALAVAICHCHSNN 156


>gi|251798378|ref|YP_003013109.1| Holliday junction resolvase [Paenibacillus sp. JDR-2]
 gi|247546004|gb|ACT03023.1| crossover junction endodeoxyribonuclease RuvC [Paenibacillus sp.
           JDR-2]
          Length = 166

 Score =  237 bits (607), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 58/156 (37%), Positives = 93/156 (59%), Gaps = 1/156 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPG+   G+G +D  G  L  V  G I +        RL Q+Y+    ++  ++
Sbjct: 1   MRVLGIDPGIAIAGFGFIDKDGHKLKPVQYGCIQTAAHTPQEERLVQIYDSAVALMDKYK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  AVE++F N++      +GQAR + IL+ A   +PV+EY P  +K+AV+G G  +K+
Sbjct: 61  PDTVAVEKLFFNRNVTTAFAVGQARGVIILAAAQRGLPVAEYTPLQVKQAVVGYGKAEKR 120

Query: 125 QIHMMLKMLMPES-FFKGKDAADALAIAVCHAYHAN 159
           Q+  M+KM +  S   K  D ADALA+A+CHA+ + 
Sbjct: 121 QVQEMVKMFLKLSAIPKPDDVADALAVAICHAHSSG 156


>gi|297544490|ref|YP_003676792.1| crossover junction endodeoxyribonuclease RuvC [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
 gi|296842265|gb|ADH60781.1| crossover junction endodeoxyribonuclease RuvC [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
          Length = 165

 Score =  237 bits (607), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 57/156 (36%), Positives = 95/156 (60%), Gaps = 1/156 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPG+   G+GI+D   +    +  G + +      A RL  +Y G+T +IK++ 
Sbjct: 1   MRVLGIDPGIATMGYGIIDYKSNKFTVIDYGAVTTKAGIDKALRLHDIYNGITSLIKSYC 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  A+E++F NK+A   + +G++R ++IL+   + I V EY P  +K+AV+G G  DK 
Sbjct: 61  PDVVAIEELFYNKNAKTVITIGESRGVSILAAVNSGIKVFEYTPLQVKQAVVGYGKADKH 120

Query: 125 QIHMMLKMLMPES-FFKGKDAADALAIAVCHAYHAN 159
           Q+  M+K+L+      K  D ADALA+A+CH +  N
Sbjct: 121 QVQQMVKVLLNLDQIPKPDDVADALAVAICHCHSNN 156


>gi|89895214|ref|YP_518701.1| hypothetical protein DSY2468 [Desulfitobacterium hafniense Y51]
 gi|219669645|ref|YP_002460080.1| Holliday junction resolvase [Desulfitobacterium hafniense DCB-2]
 gi|123397711|sp|Q24UN5|RUVC_DESHY RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|254767469|sp|B8FQV7|RUVC_DESHD RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|89334662|dbj|BAE84257.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219539905|gb|ACL21644.1| crossover junction endodeoxyribonuclease RuvC [Desulfitobacterium
           hafniense DCB-2]
          Length = 165

 Score =  237 bits (606), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 58/156 (37%), Positives = 87/156 (55%), Gaps = 1/156 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + I+GIDPG    G+G+++  G+ L  V      +     +  RL  LY  +   IK  +
Sbjct: 1   MLILGIDPGTAIMGYGLIEKKGNRLFPVDYACWRTPAHTPMPERLLMLYHEIEAYIKEKQ 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P   AVE++F N++    + +GQAR + +L+ A   +PV EY P  +K+AV G G  DK+
Sbjct: 61  PHHVAVEELFFNRNTTTAISVGQARGVVLLAAAQCGLPVYEYTPLQVKQAVAGYGRADKQ 120

Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHAN 159
           QI  M++ L+      K  D ADALAIA+CHA+  N
Sbjct: 121 QIQQMVRALLGLQEIPKPDDTADALAIAICHAHSVN 156


>gi|226311451|ref|YP_002771345.1| crossover junction endodeoxyribonuclease [Brevibacillus brevis NBRC
           100599]
 gi|254767462|sp|C0ZAN2|RUVC_BREBN RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|226094399|dbj|BAH42841.1| crossover junction endodeoxyribonuclease [Brevibacillus brevis NBRC
           100599]
          Length = 166

 Score =  237 bits (606), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 63/152 (41%), Positives = 94/152 (61%), Gaps = 1/152 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPG+   G+G+VD  G  L  V  G+I +     +  RL Q++E +  +++ +R
Sbjct: 1   MRILGIDPGIAIVGFGVVDKEGSQLRPVQYGSIQTEAGLPVPLRLKQIFEAMQSLLETYR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+E +VE++F NK+      +GQAR + IL+  LA +PV EY P  +K+AV G G  +KK
Sbjct: 61  PDEMSVEKLFFNKNVTTAFTVGQARGVIILAAELAGVPVYEYTPMQVKQAVTGYGGAEKK 120

Query: 125 QIHMMLKMLM-PESFFKGKDAADALAIAVCHA 155
           QI  M K+L+  +   K  D ADAL IA+ HA
Sbjct: 121 QIQEMTKLLLRLKEVPKPDDVADALGIAITHA 152


>gi|256545111|ref|ZP_05472477.1| crossover junction endodeoxyribonuclease RuvC [Anaerococcus
           vaginalis ATCC 51170]
 gi|256399152|gb|EEU12763.1| crossover junction endodeoxyribonuclease RuvC [Anaerococcus
           vaginalis ATCC 51170]
          Length = 164

 Score =  237 bits (605), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 52/154 (33%), Positives = 92/154 (59%), Gaps = 1/154 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + I+GIDPG+   G+G+++V G+    + +G + +  +     RL  LY+ L D+IK ++
Sbjct: 1   MIILGIDPGIAIMGYGVLEVNGNRYKVLENGVVTTSSKTKTPERLKILYDNLNDIIKQYK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+E A+E++F N++    + +G AR + +L   +  +P+ EY P  IK+A+ G G  +KK
Sbjct: 61  PDEFAIEELFFNQNVKTAITVGHARGVQVLCAQVNNLPIYEYTPLQIKQAITGFGRANKK 120

Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYH 157
           Q+   +  L+      K  DAADALA+++ HA+ 
Sbjct: 121 QMQETVTTLLNLSEIPKPDDAADALAVSLTHAFS 154


>gi|308070381|ref|YP_003871986.1| Crossover junction endodeoxyribonuclease ruvC [Paenibacillus
           polymyxa E681]
 gi|305859660|gb|ADM71448.1| Crossover junction endodeoxyribonuclease ruvC [Paenibacillus
           polymyxa E681]
          Length = 167

 Score =  237 bits (605), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 53/154 (34%), Positives = 89/154 (57%), Gaps = 1/154 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R +GIDPG+   G+G VD  G  +  V  G I +        RL  +YEG+  +I  ++
Sbjct: 1   MRFLGIDPGIAIVGFGFVDKIGSKVVPVQYGCIQTEAHTPEEERLLHVYEGMLQLIDKYK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  A+E++F N++    + + QAR + +L+     +P+ EY P  +K+A++G G  +KK
Sbjct: 61  PDAVALEKLFFNRNVTTAMSVSQARGVLVLAAKQRNLPIGEYTPMQVKQAIVGYGKAEKK 120

Query: 125 QIHMMLKMLMPES-FFKGKDAADALAIAVCHAYH 157
           Q+  M++M +      K  D ADALA+A+CHA+ 
Sbjct: 121 QVQEMVRMFLKLQVVPKPDDVADALAVAICHAHS 154


>gi|20807634|ref|NP_622805.1| Holliday junction resolvasome endonuclease subunit
           [Thermoanaerobacter tengcongensis MB4]
 gi|22096143|sp|Q8RAN4|RUVC_THETN RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|20516177|gb|AAM24409.1| Holliday junction resolvasome endonuclease subunit
           [Thermoanaerobacter tengcongensis MB4]
          Length = 165

 Score =  236 bits (604), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 60/156 (38%), Positives = 97/156 (62%), Gaps = 1/156 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPG+   G+G+V+   +    +  G I +      AFRL  LY+GL D+IK +R
Sbjct: 1   MRVLGIDPGIATLGYGVVEYKNNKFSPIVYGAITTDAGVDKAFRLYTLYKGLEDIIKLYR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           PE  A+E++F NK++   + +G+ R I+IL+   + + V EY P  +K+AV+G G  +K+
Sbjct: 61  PEIVAIEELFYNKNSKTVITIGEVRGISILAAVNSGVKVYEYTPLQVKQAVVGYGRAEKQ 120

Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHAN 159
           Q+  M+K+L+      K  D ADALA+A+CH +  N
Sbjct: 121 QVQQMVKVLLNLDEIPKPDDVADALAVAICHCHSNN 156


>gi|197119679|ref|YP_002140106.1| Holliday junction resolvase [Geobacter bemidjiensis Bem]
 gi|226698755|sp|B5EAH1|RUVC_GEOBB RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|197089039|gb|ACH40310.1| crossover junction endodeoxyribonuclease RuvC [Geobacter
           bemidjiensis Bem]
          Length = 164

 Score =  236 bits (603), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 65/155 (41%), Positives = 99/155 (63%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + I+GIDPG R+TG+GI+   G+ L  V +G I +   +    RL +++ GL+++I  +R
Sbjct: 1   MIILGIDPGSRKTGYGIISKQGNRLIHVDNGAIFTQSAKDFPERLEKIFTGLSEIIAQYR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           PE  AVE VF+ K+A + LKLGQAR  AI++     +PV EY    +K+AV+G G  +K 
Sbjct: 61  PEVVAVEDVFLAKNAQSALKLGQARGAAIVAAVNVGLPVHEYTAMQVKQAVVGTGRAEKA 120

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHAN 159
           Q+  M+K L+       +DA+DALA+A+CHA+ A 
Sbjct: 121 QVQQMIKALLNLPEVAQEDASDALAVAICHAHSAG 155


>gi|289578209|ref|YP_003476836.1| crossover junction endodeoxyribonuclease RuvC [Thermoanaerobacter
           italicus Ab9]
 gi|289527922|gb|ADD02274.1| crossover junction endodeoxyribonuclease RuvC [Thermoanaerobacter
           italicus Ab9]
          Length = 165

 Score =  236 bits (602), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 57/156 (36%), Positives = 94/156 (60%), Gaps = 1/156 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPG+   G+GI+D   +    +  G + +      A RL  +Y G+T +IK++ 
Sbjct: 1   MRVLGIDPGIATMGYGIIDYKFNKFTVIDYGAVTTKAGIDKALRLHDIYNGITSLIKSYC 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  A+E++F NK+A   + +G++R + IL+   + I V EY P  +K+AV+G G  DK 
Sbjct: 61  PDVVAIEELFYNKNAKTVITIGESRGVCILAAVNSGIKVFEYTPLQVKQAVVGYGKADKH 120

Query: 125 QIHMMLKMLMPES-FFKGKDAADALAIAVCHAYHAN 159
           Q+  M+K+L+      K  D ADALA+A+CH +  N
Sbjct: 121 QVQQMVKVLLNLDQIPKPDDVADALAVAICHCHSNN 156


>gi|114330309|ref|YP_746531.1| crossover junction endodeoxyribonuclease RuvC [Nitrosomonas
           eutropha C91]
 gi|122314645|sp|Q0AJA5|RUVC_NITEC RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|114307323|gb|ABI58566.1| crossover junction endodeoxyribonuclease RuvC [Nitrosomonas
           eutropha C91]
          Length = 178

 Score =  236 bits (602), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 71/167 (42%), Positives = 104/167 (62%), Gaps = 2/167 (1%)

Query: 3   KSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
           KSIRI+GIDPGLR TG+G+++  G  L ++ SG +V+     L  RL  + +GL ++I  
Sbjct: 6   KSIRILGIDPGLRITGFGVIEKNGSQLTYLGSGCVVTEKSG-LPDRLKTILDGLNEIILQ 64

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
            +PE+ AVEQVFVN +  +TL LGQAR  AI +  L  + V EY    IK++V+G GH  
Sbjct: 65  HQPEQVAVEQVFVNINPKSTLLLGQARGAAISAAVLHELSVYEYTALQIKQSVVGNGHAR 124

Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQD 169
           K+Q+  M+  L+        DAADALA A+CHA+   +G   ++ ++
Sbjct: 125 KEQVQEMVMRLLRLGERPRPDAADALACAICHAH-GGTGLLALSVRN 170


>gi|312143985|ref|YP_003995431.1| crossover junction endodeoxyribonuclease RuvC [Halanaerobium sp.
           'sapolanicus']
 gi|311904636|gb|ADQ15077.1| crossover junction endodeoxyribonuclease RuvC [Halanaerobium sp.
           'sapolanicus']
          Length = 165

 Score =  236 bits (602), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 62/153 (40%), Positives = 97/153 (63%), Gaps = 1/153 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGL   G+ +VD   +N   +  G I +   ++   RL  ++  + ++IK ++
Sbjct: 1   MRILGIDPGLATIGYALVDKENNNFKVLEYGVIKTSADKTNIKRLEIIHRNIQELIKEFK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           PE+ AVE++F NK+    +K+GQAR + +L+ A A I V+EY P  IK+AV+G G  DK+
Sbjct: 61  PEQMAVEELFFNKNVKTAIKVGQARGVILLAGAQAGIKVAEYTPLQIKQAVVGYGRADKR 120

Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAY 156
           Q+  M+K L+      K  DAADALAI++CH +
Sbjct: 121 QVQEMVKSLLNLVELPKPDDAADALAISICHGH 153


>gi|167629897|ref|YP_001680396.1| crossover junction endodeoxyribonuclease ruvc [Heliobacterium
           modesticaldum Ice1]
 gi|238687887|sp|B0TF68|RUVC_HELMI RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|167592637|gb|ABZ84385.1| crossover junction endodeoxyribonuclease ruvc [Heliobacterium
           modesticaldum Ice1]
          Length = 162

 Score =  236 bits (602), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 58/158 (36%), Positives = 96/158 (60%), Gaps = 1/158 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + I+GIDPG    G+G+++V G+ L  ++ G + +    S A RL  ++  L  +I  +R
Sbjct: 1   MVILGIDPGTAICGYGLIEVQGNRLSALAYGAVRTPAHTSQASRLQTIFTDLEAIIATYR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P   AVE++F N++    L +GQAR + +L+ A A + V EY P+ +K+AV+G G  +K+
Sbjct: 61  PTHVAVEELFFNRNVTTALTVGQARGVILLAAARAGLSVHEYKPSQVKQAVVGYGRAEKQ 120

Query: 125 QIHMMLKMLM-PESFFKGKDAADALAIAVCHAYHANSG 161
           Q+  M+++L+  E   K  D ADALA+A+C A+    G
Sbjct: 121 QVQQMVRVLLALEEIPKPDDVADALAVAICCAHSLTWG 158


>gi|303231812|ref|ZP_07318528.1| crossover junction endodeoxyribonuclease RuvC [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302513519|gb|EFL55545.1| crossover junction endodeoxyribonuclease RuvC [Veillonella atypica
           ACS-049-V-Sch6]
          Length = 165

 Score =  236 bits (602), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 61/156 (39%), Positives = 95/156 (60%), Gaps = 1/156 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RIIGIDPG    G+GI+DV G  L  V+ G I +    + A RL  L+  L+D+++ ++
Sbjct: 1   MRIIGIDPGTAICGYGIIDVQGSKLTPVAYGAITTPKELTDAQRLEILFNDLSDILEEYK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P++  VE++F N++    +K+GQAR + +L+    RIP+ EY P  IK+AV G G  DK 
Sbjct: 61  PDKFGVEELFFNRNVTTAIKVGQARGVILLAAEQQRIPIYEYTPLQIKQAVTGYGKADKN 120

Query: 125 QIHMMLKMLMP-ESFFKGKDAADALAIAVCHAYHAN 159
           Q+  M   ++      K  D ADALA+A+C A+ ++
Sbjct: 121 QVIYMTMNILGIREKIKPDDTADALAVAICTAHSSH 156


>gi|147677360|ref|YP_001211575.1| Holliday junction resolvase [Pelotomaculum thermopropionicum SI]
 gi|189046070|sp|A5D3F9|RUVC_PELTS RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|146273457|dbj|BAF59206.1| holliday junction resolvasome, endonuclease subunit [Pelotomaculum
           thermopropionicum SI]
          Length = 164

 Score =  236 bits (602), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 64/154 (41%), Positives = 91/154 (59%), Gaps = 1/154 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + I+G+DPG   TG+GIV+ AG+    V  G I +      A RL  LY  L ++IK  R
Sbjct: 1   MLIMGVDPGTAITGYGIVEYAGNRFALVECGCIRTMPGVPPAERLQALYGELVEIIKRHR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           PE  AVE++F NK+    L +GQAR + +L+ A + +PV EY P  +K+AV G G   K 
Sbjct: 61  PEHFAVEEIFFNKNTRTALTVGQARGVTVLAAAQSGLPVFEYTPLQVKQAVAGFGRAGKT 120

Query: 125 QIHMMLKMLMPESF-FKGKDAADALAIAVCHAYH 157
           Q+  M+K ++         D ADALA+A+CHA+H
Sbjct: 121 QVQYMVKTILALPEVPAPDDVADALAVAICHAHH 154


>gi|254179003|ref|ZP_04885657.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia mallei
           ATCC 10399]
 gi|160694917|gb|EDP84925.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia mallei
           ATCC 10399]
          Length = 209

 Score =  236 bits (602), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 71/159 (44%), Positives = 105/159 (66%), Gaps = 1/159 (0%)

Query: 2   RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           R S+RI+GIDPGLR TG+G++DV+G  L +V+SG I +     L  RL  +Y+G++ +I+
Sbjct: 27  RFSMRILGIDPGLRVTGFGVIDVSGHQLAYVASGVIKTPT-ADLPTRLGTIYDGVSTLIR 85

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
              P++AA+E+VFVN +  +TL LGQAR  AI       +PV+EY    +K+AV+G G  
Sbjct: 86  EHTPDQAAIEKVFVNVNPQSTLLLGQARGAAICGLVSGGLPVAEYTALQLKQAVVGYGRA 145

Query: 122 DKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
            K+Q+  M+  L+  S   G DAADAL +A+CHA+  N+
Sbjct: 146 TKEQMQEMVARLLSLSGRPGTDAADALGMAICHAHGGNT 184


>gi|150390101|ref|YP_001320150.1| crossover junction endodeoxyribonuclease RuvC [Alkaliphilus
           metalliredigens QYMF]
 gi|167012674|sp|A6TQM3|RUVC_ALKMQ RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|149949963|gb|ABR48491.1| crossover junction endodeoxyribonuclease RuvC [Alkaliphilus
           metalliredigens QYMF]
          Length = 164

 Score =  235 bits (601), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 54/156 (34%), Positives = 92/156 (58%), Gaps = 1/156 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + I+GIDPG+   G+GIV   G+    +  G I +  + +   RL ++Y  L ++I  ++
Sbjct: 1   MIILGIDPGIAILGYGIVKYEGNKFKVIDYGAIKTSSKMATPQRLKEIYLRLDELISEYQ 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  A+E++F N +    + +  AR +A+L+ A+    + EY P  +K+AV+G G  +KK
Sbjct: 61  PDAVAIEELFFNTNTTTAMVVSHARGVAVLAAAIHEKEIYEYTPLQVKQAVVGYGRAEKK 120

Query: 125 QIHMMLKMLMPES-FFKGKDAADALAIAVCHAYHAN 159
           Q+  M+K+L+      K  D ADALA+AVCHA+  +
Sbjct: 121 QVQQMIKILLNLEQAPKPDDVADALAVAVCHAHSGH 156


>gi|304407531|ref|ZP_07389183.1| crossover junction endodeoxyribonuclease RuvC [Paenibacillus
           curdlanolyticus YK9]
 gi|304343482|gb|EFM09324.1| crossover junction endodeoxyribonuclease RuvC [Paenibacillus
           curdlanolyticus YK9]
          Length = 166

 Score =  235 bits (601), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 57/154 (37%), Positives = 94/154 (61%), Gaps = 1/154 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPG+   G+G +D  G  L  V  G+I +        RL Q+YE  + ++  ++
Sbjct: 1   MRVLGIDPGIAIVGFGFIDKDGHKLTPVQYGSIETKAHTPSETRLLQVYESASALMDKYK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  AVE++F N++      +GQAR + IL+ A   +P++EY P  +K+AV+G G  +K+
Sbjct: 61  PDSVAVEKLFFNRNVTTAFDVGQARGVIILAAAQRGLPIAEYTPLQVKQAVVGYGKAEKR 120

Query: 125 QIHMMLKMLMPES-FFKGKDAADALAIAVCHAYH 157
           Q+  M++M +  S   K  D ADALA+A+CHA+ 
Sbjct: 121 QVQEMVRMFLKLSAIPKPDDVADALAVAICHAHS 154


>gi|300914175|ref|ZP_07131491.1| crossover junction endodeoxyribonuclease RuvC [Thermoanaerobacter
           sp. X561]
 gi|307724589|ref|YP_003904340.1| crossover junction endodeoxyribonuclease RuvC [Thermoanaerobacter
           sp. X513]
 gi|320115838|ref|YP_004185997.1| crossover junction endodeoxyribonuclease RuvC [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
 gi|300889110|gb|EFK84256.1| crossover junction endodeoxyribonuclease RuvC [Thermoanaerobacter
           sp. X561]
 gi|307581650|gb|ADN55049.1| crossover junction endodeoxyribonuclease RuvC [Thermoanaerobacter
           sp. X513]
 gi|319928929|gb|ADV79614.1| crossover junction endodeoxyribonuclease RuvC [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
          Length = 165

 Score =  235 bits (600), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 56/156 (35%), Positives = 94/156 (60%), Gaps = 1/156 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPG+   G+GI+D   +    +  G + +      A RL  +Y G+  +IK++ 
Sbjct: 1   MRVLGIDPGIAIMGYGIIDYKSNKFTVIDYGAVTTKAGIDKALRLHDIYNGIISLIKSYS 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  A+E++F NK+A   + +G++R ++IL+   + I V EY P  +K+AV+G G  DK 
Sbjct: 61  PDVVAIEELFYNKNAKTVITIGESRGVSILAAVNSGIKVFEYTPLQVKQAVVGYGRADKH 120

Query: 125 QIHMMLKMLM-PESFFKGKDAADALAIAVCHAYHAN 159
           Q+  M+K L+  E   +  D ADALA+A+CH +  N
Sbjct: 121 QVQQMVKALLDLEEIPRPDDVADALAVAICHCHSNN 156


>gi|303230210|ref|ZP_07316978.1| crossover junction endodeoxyribonuclease RuvC [Veillonella atypica
           ACS-134-V-Col7a]
 gi|302515136|gb|EFL57110.1| crossover junction endodeoxyribonuclease RuvC [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 165

 Score =  234 bits (599), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 62/156 (39%), Positives = 95/156 (60%), Gaps = 1/156 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RIIGIDPG    G+GI+DV G  L  V+ G I +    + A RL  L+  L+D+++ ++
Sbjct: 1   MRIIGIDPGTAICGYGIIDVQGSKLTPVAYGAITTPKELTDAQRLEILFNDLSDILEEYK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P++  VE++F N++    +K+GQAR I +L+    RIP+ EY P  IK+AV G G  DK 
Sbjct: 61  PDKFGVEELFFNRNVTTAIKVGQARGIILLAAEQQRIPIYEYTPLQIKQAVTGYGKADKN 120

Query: 125 QIHMMLKMLMP-ESFFKGKDAADALAIAVCHAYHAN 159
           Q+  M   ++      K  D ADALA+A+C A+ ++
Sbjct: 121 QVIYMTMNILGIREKIKPDDTADALAVAICTAHSSH 156


>gi|253699568|ref|YP_003020757.1| Holliday junction resolvase [Geobacter sp. M21]
 gi|259495688|sp|C6E1T0|RUVC_GEOSM RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|251774418|gb|ACT16999.1| crossover junction endodeoxyribonuclease RuvC [Geobacter sp. M21]
          Length = 164

 Score =  234 bits (599), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 65/155 (41%), Positives = 99/155 (63%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + I+GIDPG R+TG+GI+   G+ L  V +G I +   +    RL +++ GL+++I  +R
Sbjct: 1   MIILGIDPGSRKTGYGIISKQGNRLIHVDNGAIFTQSAKDFPERLEKIFTGLSEIIAQYR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           PE  AVE VF+ K+A + LKLGQAR  AI++     +PV EY    +K+AV+G G  +K 
Sbjct: 61  PEVVAVEDVFLAKNAQSALKLGQARGAAIVAAVNVGLPVHEYTAMQVKQAVVGTGRAEKA 120

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHAN 159
           Q+  M+K L+       +DA+DALA+A+CHA+ A 
Sbjct: 121 QVQQMIKALLNLPEVAQEDASDALAVAICHAHSAG 155


>gi|310643560|ref|YP_003948318.1| crossover junction endodeoxyribonuclease ruvc [Paenibacillus
           polymyxa SC2]
 gi|309248510|gb|ADO58077.1| Crossover junction endodeoxyribonuclease ruvC [Paenibacillus
           polymyxa SC2]
          Length = 167

 Score =  234 bits (599), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 53/154 (34%), Positives = 90/154 (58%), Gaps = 1/154 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R +GIDPG+   G+G VD  G  +  V  G I +        RL  +YEG+  +I  ++
Sbjct: 1   MRFLGIDPGIAIVGFGFVDKIGSKVVPVQYGCIQTEAHTPEEDRLLHVYEGMLQLIDKYK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  A+E++F N++    + + QAR + +L+     +P+ EY P  +K+A++G G  +KK
Sbjct: 61  PDAVALEKLFFNRNVTTAMSVSQARGVLVLAAKQRNLPIGEYTPMQVKQAIVGYGKAEKK 120

Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYH 157
           Q+  M++M +   +  K  D ADALA+A+CHA+ 
Sbjct: 121 QVQEMIRMFLKLQAVPKPDDVADALAVAICHAHS 154


>gi|163751783|ref|ZP_02159000.1| crossover junction endodeoxyribonuclease RuvC [Shewanella benthica
           KT99]
 gi|161328347|gb|EDP99507.1| crossover junction endodeoxyribonuclease RuvC [Shewanella benthica
           KT99]
          Length = 173

 Score =  234 bits (599), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 62/154 (40%), Positives = 101/154 (65%), Gaps = 1/154 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G +  ++ SG I +   +  A+RL Q+++G++++I+ ++P 
Sbjct: 4   ILGIDPGSRITGYGVIKRNGRHPLYLGSGCIRTNS-EDFAYRLKQIFDGISEIIRQYQPT 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E+VF+ K+A + LKLGQAR  AI++   A +PV EY+   IK AV+G G   K Q+
Sbjct: 63  EFAIERVFMAKNADSALKLGQARGAAIVAATNADLPVGEYSATQIKSAVVGTGRAQKSQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
             M++ ++  S     DAADAL +A+CH + + S
Sbjct: 123 QHMVQQILKLSACPQADAADALGVAICHFHTSQS 156


>gi|187927482|ref|YP_001897969.1| Holliday junction resolvase [Ralstonia pickettii 12J]
 gi|309779816|ref|ZP_07674571.1| crossover junction endodeoxyribonuclease RuvC [Ralstonia sp.
           5_7_47FAA]
 gi|238691843|sp|B2UFL4|RUVC_RALPJ RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|187724372|gb|ACD25537.1| crossover junction endodeoxyribonuclease RuvC [Ralstonia pickettii
           12J]
 gi|308921393|gb|EFP67035.1| crossover junction endodeoxyribonuclease RuvC [Ralstonia sp.
           5_7_47FAA]
          Length = 181

 Score =  234 bits (598), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 65/152 (42%), Positives = 98/152 (64%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGLR TG+G+++  G  L +V+SGTI S     L  RL  LY+G+++++  +R
Sbjct: 1   MRILGIDPGLRTTGFGVLERHGHKLVYVASGTIKSNGNADLPSRLKTLYDGVSELVSTYR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ A++E+VFVN +  +TL LGQAR   I       +PV EY    +K+AV+G G  +K 
Sbjct: 61  PDCASIEKVFVNVNPQSTLLLGQARGAVICGLMSGNLPVFEYTALQLKQAVVGYGRANKD 120

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
           Q+  M+  L+      G DA+DAL +A+CHA+
Sbjct: 121 QVQEMVVRLLNLEGKPGADASDALGVAICHAH 152


>gi|94309371|ref|YP_582581.1| Holliday junction resolvase [Cupriavidus metallidurans CH34]
 gi|122988061|sp|Q1LRB4|RUVC_RALME RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|93353223|gb|ABF07312.1| component of RuvABC resolvasome, endonuclease [Cupriavidus
           metallidurans CH34]
          Length = 181

 Score =  234 bits (598), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 69/156 (44%), Positives = 101/156 (64%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGLR TG+G+++  G+ L +V+SGTI S    SL  RL  LY+G+++V + + 
Sbjct: 1   MRILGIDPGLRTTGFGVLEKHGNKLAYVASGTIRSNGETSLPERLKTLYDGISEVARTYA 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ AA+E+VFVN +  +TL LGQAR  AI       +PV EY    +K AV+G G  +K+
Sbjct: 61  PDCAAIEKVFVNVNPQSTLLLGQARGAAICGLVGQGLPVFEYTALQLKVAVVGYGRANKE 120

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           Q+  M+  L+  S     DAADAL +A+CHA   ++
Sbjct: 121 QVQEMVMRLLSLSGRPSSDAADALGVAICHANGGDT 156


>gi|114563353|ref|YP_750866.1| crossover junction endodeoxyribonuclease RuvC [Shewanella
           frigidimarina NCIMB 400]
 gi|122299597|sp|Q081N7|RUVC_SHEFN RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|114334646|gb|ABI72028.1| crossover junction endodeoxyribonuclease RuvC [Shewanella
           frigidimarina NCIMB 400]
          Length = 173

 Score =  234 bits (598), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 64/154 (41%), Positives = 95/154 (61%), Gaps = 1/154 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+G+DPG R TG+G++   G    ++ SG I +     L  RL Q+Y GL ++I  ++P+
Sbjct: 4   ILGVDPGSRITGYGVIQCQGRQQIYLGSGCIRTSAD-DLPQRLQQIYAGLCEIITQYKPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E+VF+ K+A + LKLGQAR  AI++   A +PV+EY+   IK AV+G G   K Q+
Sbjct: 63  EFAIERVFMAKNADSALKLGQARGAAIVAATCAGLPVAEYSATQIKSAVVGTGRAQKTQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
             M+K L+        DAADAL +A+CH +   S
Sbjct: 123 QHMIKQLLKLPASPQADAADALGVAICHFHTYQS 156


>gi|167037425|ref|YP_001665003.1| Holliday junction resolvase [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|167040092|ref|YP_001663077.1| Holliday junction resolvase [Thermoanaerobacter sp. X514]
 gi|256752591|ref|ZP_05493445.1| crossover junction endodeoxyribonuclease RuvC [Thermoanaerobacter
           ethanolicus CCSD1]
 gi|166854332|gb|ABY92741.1| crossover junction endodeoxyribonuclease RuvC [Thermoanaerobacter
           sp. X514]
 gi|166856259|gb|ABY94667.1| crossover junction endodeoxyribonuclease RuvC [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|256748529|gb|EEU61579.1| crossover junction endodeoxyribonuclease RuvC [Thermoanaerobacter
           ethanolicus CCSD1]
          Length = 182

 Score =  234 bits (598), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 56/156 (35%), Positives = 94/156 (60%), Gaps = 1/156 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPG+   G+GI+D   +    +  G + +      A RL  +Y G+  +IK++ 
Sbjct: 18  MRVLGIDPGIAIMGYGIIDYKSNKFTVIDYGAVTTKAGIDKALRLHDIYNGIISLIKSYS 77

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  A+E++F NK+A   + +G++R ++IL+   + I V EY P  +K+AV+G G  DK 
Sbjct: 78  PDVVAIEELFYNKNAKTVITIGESRGVSILAAVNSGIKVFEYTPLQVKQAVVGYGRADKH 137

Query: 125 QIHMMLKMLM-PESFFKGKDAADALAIAVCHAYHAN 159
           Q+  M+K L+  E   +  D ADALA+A+CH +  N
Sbjct: 138 QVQQMVKALLDLEEIPRPDDVADALAVAICHCHSNN 173


>gi|91776706|ref|YP_546462.1| crossover junction endodeoxyribonuclease RuvC [Methylobacillus
           flagellatus KT]
 gi|122985390|sp|Q1GYR6|RUVC_METFK RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|91710693|gb|ABE50621.1| crossover junction endodeoxyribonuclease RuvC [Methylobacillus
           flagellatus KT]
          Length = 180

 Score =  234 bits (598), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 70/168 (41%), Positives = 107/168 (63%), Gaps = 6/168 (3%)

Query: 6   RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVR-----QSLAFRLCQLYEGLTDVI 60
           RI+GIDPGLR TG+G+++  G+ L +V+SGTI +        + L  RL  + + L +VI
Sbjct: 4   RILGIDPGLRLTGFGVIEKTGEKLAYVASGTIKTTTGKGSEIEDLPTRLKIILDSLAEVI 63

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
            N++P++AA+E+VFVN +  +TL LGQAR  AI +  L  +P++EY    +K++V+G GH
Sbjct: 64  DNYQPQQAAIEKVFVNVNPQSTLLLGQARGAAISALVLQGLPIAEYTALQVKQSVVGHGH 123

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
             K Q+  M+K L+        D+ADALA A+CHA+    G  K+A+ 
Sbjct: 124 AAKDQVQEMVKRLLNLPGLPRPDSADALACAICHAH-GGQGLGKLATA 170


>gi|313202067|ref|YP_004040725.1| crossover junction endodeoxyribonuclease ruvc [Methylovorus sp.
           MP688]
 gi|312441383|gb|ADQ85489.1| crossover junction endodeoxyribonuclease RuvC [Methylovorus sp.
           MP688]
          Length = 178

 Score =  234 bits (597), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 69/169 (40%), Positives = 106/169 (62%), Gaps = 6/169 (3%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVR-----QSLAFRLCQLYEGLTDV 59
           +RI+GIDPGLR TG+G+++  G+ L +V+SGTI +        + L  RL  + +GL +V
Sbjct: 1   MRILGIDPGLRLTGFGVIEKTGEKLSYVASGTIKTTQGKGAEIEDLPSRLKIILDGLAEV 60

Query: 60  IKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVG 119
           I  + PE+ A+E+VFVN +  +TL LGQAR  AI +  +  +PV+EY    +K++V+G G
Sbjct: 61  IATYAPEQVAIEKVFVNVNPQSTLLLGQARGAAICAAVIQNLPVAEYTALQVKQSVVGNG 120

Query: 120 HGDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
           H  K+Q+  M+K L+        D+ADALA A+CHA+    G   +A+ 
Sbjct: 121 HAAKEQVQEMVKRLLKLPGVPKPDSADALACAICHAH-GGQGLGLLATA 168


>gi|113866529|ref|YP_725018.1| Holliday junction resolvase [Ralstonia eutropha H16]
 gi|123033273|sp|Q0KEC1|RUVC_RALEH RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|113525305|emb|CAJ91650.1| crossover junction endodeoxyribonuclease RuvC [Ralstonia eutropha
           H16]
          Length = 181

 Score =  234 bits (597), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 68/156 (43%), Positives = 101/156 (64%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGLR TG+G+++  G+ L +V+SGTI S    +L  RL  LY+G+++V + + 
Sbjct: 1   MRILGIDPGLRTTGFGVIEKHGNKLAYVASGTIKSDGNSTLPERLKTLYDGISEVSRTYA 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ AA+E+VFVN +  +TL LGQAR  AI       +PV EY    +K AV+G G  +K 
Sbjct: 61  PDCAAIEKVFVNVNPQSTLLLGQARGAAICGLVGYGLPVFEYTALQLKVAVVGYGRANKA 120

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           Q+  M+  L+      G DAADAL +A+CHA  +++
Sbjct: 121 QVQEMVTRLLMLPGQPGSDAADALGVAICHANGSDT 156


>gi|118581083|ref|YP_902333.1| Holliday junction resolvase [Pelobacter propionicus DSM 2379]
 gi|166233278|sp|A1ASF5|RUVC_PELPD RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|118503793|gb|ABL00276.1| crossover junction endodeoxyribonuclease RuvC [Pelobacter
           propionicus DSM 2379]
          Length = 176

 Score =  233 bits (596), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 67/155 (43%), Positives = 97/155 (62%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPG R TG+GIV+ AG  L  V +G I +        RL  +++GLT VI  + 
Sbjct: 1   MRVLGIDPGSRITGYGIVEQAGSRLIHVDNGAIFTDSALDFPGRLKSIFDGLTTVIAEYE 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+E AVE VF++ +A + LKLGQAR  AI++   A +PV+EY    +K+AV+G G   K+
Sbjct: 61  PDEVAVENVFLSNNAQSALKLGQARGAAIVAAVHAGLPVAEYTALQVKQAVVGRGKAAKE 120

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHAN 159
           Q+  ML  L+        DA+DALA+AVCH +  +
Sbjct: 121 QVQKMLTALLSLPEVAQADASDALAVAVCHLHSHH 155


>gi|253574943|ref|ZP_04852283.1| crossover junction endodeoxyribonuclease RuvC [Paenibacillus sp.
           oral taxon 786 str. D14]
 gi|251845989|gb|EES73997.1| crossover junction endodeoxyribonuclease RuvC [Paenibacillus sp.
           oral taxon 786 str. D14]
          Length = 167

 Score =  233 bits (596), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 51/154 (33%), Positives = 91/154 (59%), Gaps = 1/154 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPG+   G+G +D  G+ +  V  G I +        RL  +YE +  +I  ++
Sbjct: 1   MRILGIDPGIAIVGFGFIDKQGNRVTPVQYGCIQTEAHTPEEERLMHVYEAMVQLIDKYK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  A E++F N++    + + QAR + +L+ A   +P++EY P  +K+A++G G  +K+
Sbjct: 61  PDAVAFEKLFFNRNVTTAMSVSQARGVLVLAAAQKGLPIAEYTPMQVKQAIVGYGKAEKR 120

Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYH 157
           Q+  M +M +   +  K  D ADAL++A+CHA+ 
Sbjct: 121 QVQEMTRMFLKLQAIPKPDDVADALSVAICHAHS 154


>gi|254000107|ref|YP_003052170.1| Holliday junction resolvase [Methylovorus sp. SIP3-4]
 gi|253986786|gb|ACT51643.1| crossover junction endodeoxyribonuclease RuvC [Methylovorus sp.
           SIP3-4]
          Length = 178

 Score =  233 bits (596), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 68/169 (40%), Positives = 106/169 (62%), Gaps = 6/169 (3%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVR-----QSLAFRLCQLYEGLTDV 59
           +RI+GIDPGLR TG+G+++  G+ L +++SGTI +        + L  RL  + +GL +V
Sbjct: 1   MRILGIDPGLRLTGFGVIEKTGEKLSYIASGTIKTTQGKGAEIEDLPSRLKIILDGLAEV 60

Query: 60  IKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVG 119
           I  + PE+ A+E+VFVN +  +TL LGQAR  AI +  +  +PV+EY    +K++V+G G
Sbjct: 61  IATYAPEQVAIEKVFVNVNPQSTLLLGQARGAAICAAVIQNLPVAEYTALQVKQSVVGNG 120

Query: 120 HGDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
           H  K+Q+  M+K L+        D+ADALA A+CHA+    G   +A+ 
Sbjct: 121 HAAKEQVQEMVKRLLKLPGVPKPDSADALACAICHAH-GGQGLGLLATA 168


>gi|300705138|ref|YP_003746741.1| endodeoxyribonuclease subunit C of ruvABC holliday junction
           resolvasome [Ralstonia solanacearum CFBP2957]
 gi|299072802|emb|CBJ44157.1| endodeoxyribonuclease, subunit C of RuvABC Holliday junction
           resolvasome [Ralstonia solanacearum CFBP2957]
          Length = 181

 Score =  233 bits (596), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 70/166 (42%), Positives = 105/166 (63%), Gaps = 2/166 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGLR TG+G+++  G  L +V+SGTI S     L  RL  LY+G++++++ +R
Sbjct: 1   MRILGIDPGLRTTGFGVLERHGHQLVYVASGTIKSDGNTDLPSRLKTLYDGVSELVRTYR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ A++E+VFVN +  +TL LGQAR  AI       +PV EY    +K AV+G G  +K+
Sbjct: 61  PDCASIEKVFVNVNPQSTLLLGQARGAAICGLVSGGLPVFEYTALQLKLAVVGYGRANKE 120

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHAN--SGYYKIASQ 168
           Q+  M+  L+      G DAADAL +A+CHA+  +  S    +A Q
Sbjct: 121 QVQDMVVRLLNLEGRPGTDAADALGVAICHAHGGDTLSAMAGLAPQ 166


>gi|294141123|ref|YP_003557101.1| crossover junction endodeoxyribonuclease RuvC [Shewanella violacea
           DSS12]
 gi|293327592|dbj|BAJ02323.1| crossover junction endodeoxyribonuclease RuvC [Shewanella violacea
           DSS12]
          Length = 173

 Score =  233 bits (595), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 61/154 (39%), Positives = 99/154 (64%), Gaps = 1/154 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G +  ++ SG I +      A+RL Q+++G++++I+ ++P 
Sbjct: 4   ILGIDPGSRITGYGVIKRNGRHPIYLGSGCIRTSSD-DFAYRLKQIFDGVSEIIRQYQPT 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E+VF+ K+A + LKLGQAR  AI++     +PV EY+   IK AV+G G   K Q+
Sbjct: 63  EFAIERVFMAKNADSALKLGQARGAAIVAATNVDLPVGEYSATQIKSAVVGTGKAQKSQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
             M++ ++  S     DAADAL +A+CH + + S
Sbjct: 123 QHMVQQILKLSASPQADAADALGVAICHFHTSQS 156


>gi|73540192|ref|YP_294712.1| Holliday junction resolvase [Ralstonia eutropha JMP134]
 gi|97274889|sp|Q475R5|RUVC_RALEJ RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|72117605|gb|AAZ59868.1| Crossover junction endodeoxyribonuclease RuvC [Ralstonia eutropha
           JMP134]
          Length = 181

 Score =  233 bits (595), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 65/156 (41%), Positives = 99/156 (63%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGLR TG+G+++  G+ L +++SGTI S     L  RL  L++G+++V + + 
Sbjct: 1   MRILGIDPGLRTTGFGVLEKHGNKLSYIASGTIKSNGETDLPARLKTLFDGISEVARTYT 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ AA+E+VFVN +  +TL LGQAR  AI       +PV EY    +K AV+G G  +K+
Sbjct: 61  PDCAAIEKVFVNVNPQSTLLLGQARGAAICGLVGQGLPVFEYTALQLKVAVVGYGRANKE 120

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           Q+  M+  L+        DAADAL +A+CHA   ++
Sbjct: 121 QVQEMVMRLLSLPGRPSTDAADALGVAICHANGGDT 156


>gi|323706512|ref|ZP_08118071.1| crossover junction endodeoxyribonuclease RuvC
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534142|gb|EGB23934.1| crossover junction endodeoxyribonuclease RuvC
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 165

 Score =  233 bits (595), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 59/154 (38%), Positives = 95/154 (61%), Gaps = 1/154 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RIIGIDPG+   G+GI+D  G     +  G I + V    + RL  +Y+G+  +I+ +R
Sbjct: 1   MRIIGIDPGIAIVGYGIIDDNGGKFKVLDYGAITTPVGAEKSLRLKDVYDGINSLIEKYR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  A+E++F NK+A   + +G+AR +AIL+     I V EY P  +K++V+G G  +KK
Sbjct: 61  PDVMAIEELFFNKNAKTVITIGEARGVAILAAVNCGIQVFEYTPLQVKQSVVGYGRAEKK 120

Query: 125 QIHMMLKMLM-PESFFKGKDAADALAIAVCHAYH 157
           Q+  M+K ++  +   K  D ADALA+A+CH+  
Sbjct: 121 QVQNMVKAILRLDEIPKPDDVADALAVALCHSNS 154


>gi|237748979|ref|ZP_04579459.1| crossover junction endodeoxyribonuclease ruvC [Oxalobacter
           formigenes OXCC13]
 gi|229380341|gb|EEO30432.1| crossover junction endodeoxyribonuclease ruvC [Oxalobacter
           formigenes OXCC13]
          Length = 181

 Score =  232 bits (594), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 63/152 (41%), Positives = 101/152 (66%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++I+GIDPGLR TG+GI+   G++L +++SGT+ +     L  RL  +++G++++I  ++
Sbjct: 1   MKILGIDPGLRTTGFGIIHKKGNSLVYIASGTVKTPAEAGLPLRLKTIFDGISEIIAEYQ 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ AA+E+VFVN +  +TL LGQAR  AI +   + + V E+    IK+AV+G G   KK
Sbjct: 61  PDCAAIEKVFVNVNPQSTLLLGQARGAAISALVASELAVYEFTALQIKQAVVGHGKAQKK 120

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
           Q+  M++ L+      G DAADAL  A+CHA+
Sbjct: 121 QVQEMVQRLLSLPGIPGSDAADALGAAICHAH 152


>gi|161723182|ref|YP_441796.2| Holliday junction resolvase [Burkholderia thailandensis E264]
 gi|167580617|ref|ZP_02373491.1| Holliday junction resolvase [Burkholderia thailandensis TXDOH]
 gi|167618723|ref|ZP_02387354.1| Holliday junction resolvase [Burkholderia thailandensis Bt4]
 gi|257137962|ref|ZP_05586224.1| Holliday junction resolvase [Burkholderia thailandensis E264]
 gi|187611419|sp|Q2SZ53|RUVC_BURTA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
          Length = 180

 Score =  232 bits (594), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 69/156 (44%), Positives = 103/156 (66%), Gaps = 1/156 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGLR TG+G++DV+G  L +V+SG I +     L  RL  +Y+G++ +I+   
Sbjct: 1   MRILGIDPGLRVTGFGVIDVSGHRLAYVASGVIKTPT-ADLPTRLGTIYDGVSTLIREHT 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P++AA+E+VFVN +  +TL LGQAR  AI       +PV+EY    +K+AV+G G   K+
Sbjct: 60  PDQAAIEKVFVNVNPQSTLLLGQARGAAICGLVSGGLPVAEYTALQLKQAVVGYGRATKE 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           Q+  M+  L+  S   G DAADAL +A+CHA+  N+
Sbjct: 120 QMQEMVARLLSLSGLPGTDAADALGMAICHAHGGNT 155


>gi|30248235|ref|NP_840305.1| crossover junction endodeoxyribonuclease RuvC [Nitrosomonas
           europaea ATCC 19718]
 gi|44888452|sp|Q82XP5|RUVC_NITEU RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|30180120|emb|CAD84122.1| Crossover junction endodeoxyribonuclease RuvC [Nitrosomonas
           europaea ATCC 19718]
          Length = 181

 Score =  232 bits (594), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 72/168 (42%), Positives = 105/168 (62%), Gaps = 2/168 (1%)

Query: 2   RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
            K IRI+GIDPGLR TG+GIV+  G+ L ++ SG +V+     L  RL  + +GL ++I 
Sbjct: 8   AKGIRILGIDPGLRITGFGIVEKIGNRLVYIGSGCVVT-GESGLPDRLKTILDGLNEIIL 66

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
             +PE+ AVEQVFVN +  +TL LGQAR  AI +  L  + V EY    +K+AV+G GH 
Sbjct: 67  QHKPEQVAVEQVFVNINPKSTLLLGQARGAAISAAVLHELSVYEYTALQVKQAVVGNGHA 126

Query: 122 DKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQD 169
            K+Q+  M+  L+        DAADALA A+CHA+   +G   +++++
Sbjct: 127 RKEQVQEMVMRLLGLGERPRPDAADALACAICHAH-GGTGLLTLSARN 173


>gi|241662012|ref|YP_002980372.1| Holliday junction resolvase [Ralstonia pickettii 12D]
 gi|240864039|gb|ACS61700.1| crossover junction endodeoxyribonuclease RuvC [Ralstonia pickettii
           12D]
          Length = 181

 Score =  232 bits (594), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 65/152 (42%), Positives = 99/152 (65%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGLR TG+G+++  G  L +V+SGTI S     L  RL  LY+G+++++  +R
Sbjct: 1   MRILGIDPGLRTTGFGVLERHGHKLVYVASGTIKSNGNADLPSRLKTLYDGVSELVSTYR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ A++E+VFVN +  +TL LGQAR   I       +PV EY    +K+AV+G G  +K 
Sbjct: 61  PDCASIEKVFVNVNPQSTLLLGQARGAVICGLMSGNLPVFEYTALQLKQAVVGYGRANKD 120

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
           Q+  M+  L+  +   G DA+DAL +A+CHA+
Sbjct: 121 QVQEMVVRLLNLAGRPGADASDALGVAICHAH 152


>gi|108804161|ref|YP_644098.1| crossover junction endodeoxyribonuclease RuvC [Rubrobacter
           xylanophilus DSM 9941]
 gi|123368178|sp|Q1AWE2|RUVC_RUBXD RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|108765404|gb|ABG04286.1| crossover junction endodeoxyribonuclease RuvC [Rubrobacter
           xylanophilus DSM 9941]
          Length = 179

 Score =  232 bits (593), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 61/162 (37%), Positives = 94/162 (58%), Gaps = 2/162 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG    GWG+V   G  L +V  G I +     +  RL +L+ G+T++I+ +RP 
Sbjct: 10  ILGIDPGTATMGWGVVRQEGSRLRYVQHGAITTPSGWGMPRRLDRLFAGVTELIRGYRPS 69

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             AVE++F N +    + +GQAR +A+L+   A + V EY P  +K+A+   G  DK+Q+
Sbjct: 70  AVAVEELFFNTNVTTAITVGQARGVALLAAYRAGVEVFEYTPLQVKQAITSYGRADKRQV 129

Query: 127 HMMLKMLMPE-SFFKGKDAADALAIAVCHAY-HANSGYYKIA 166
             M++ L+   S  +  DAAD LAIA+CHA+ H  S    + 
Sbjct: 130 QEMVRALLGLRSIPRPDDAADGLAIAICHAFSHRMSAATGVG 171


>gi|146296576|ref|YP_001180347.1| crossover junction endodeoxyribonuclease RuvC [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|166231590|sp|A4XJS1|RUVC_CALS8 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|145410152|gb|ABP67156.1| crossover junction endodeoxyribonuclease RuvC [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 166

 Score =  232 bits (593), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 54/162 (33%), Positives = 92/162 (56%), Gaps = 2/162 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVD-VAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++GIDPG+  TG+GI++   G     +  G I +      + RL  LY  L  +I  +
Sbjct: 1   MRVLGIDPGIALTGYGIIESKNGSEFKVIDYGRIETSSSLKKSMRLLHLYTELCSIISLY 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +P+  A+E++F +K++   + +G+AR + IL+     + + EY P  +K+++ G G  DK
Sbjct: 61  QPDVVAIEELFFSKNSKTAITIGEARGVIILTCIQNNLSIYEYTPLQVKQSITGYGRADK 120

Query: 124 KQIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHANSGYYK 164
            QI  M+K L+      K  D ADALA+A+CH   ++S  Y+
Sbjct: 121 TQIQKMVKSLLGLSEIPKPDDVADALAVAMCHILSSSSVLYQ 162


>gi|188591244|ref|YP_001795844.1| holliday junction resolvase [Cupriavidus taiwanensis LMG 19424]
 gi|238692934|sp|B2AH75|RUVC_CUPTR RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|170938138|emb|CAP63124.1| endodeoxyribonuclease, subunit C of RuvABC Holliday junction
           resolvasome [Cupriavidus taiwanensis LMG 19424]
          Length = 181

 Score =  232 bits (593), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 67/156 (42%), Positives = 100/156 (64%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGLR TG+G+++  G+ L +++SGTI S    +L  RL  LY+G+++V + + 
Sbjct: 1   MRILGIDPGLRTTGFGVIEKQGNKLAYIASGTIKSDGNANLPERLKTLYDGISEVSRTYA 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ AA+E+VFVN +  +TL LGQAR  AI       +PV EY    +K AV+G G  +K 
Sbjct: 61  PDCAAIEKVFVNVNPQSTLLLGQARGAAICGLVGYGLPVFEYTALQLKVAVVGYGRANKA 120

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           Q+  M+  L+      G DAADAL +A+CHA   ++
Sbjct: 121 QVQEMVTRLLMLPGQPGSDAADALGVAICHANGGDT 156


>gi|77919930|ref|YP_357745.1| Holliday junction resolvase [Pelobacter carbinolicus DSM 2380]
 gi|90146471|sp|Q3A232|RUVC_PELCD RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|77546013|gb|ABA89575.1| crossover junction endodeoxyribonuclease RuvC [Pelobacter
           carbinolicus DSM 2380]
          Length = 161

 Score =  232 bits (593), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 65/152 (42%), Positives = 102/152 (67%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPG R TG+G+++  G+ L  V +G I +     LA RL  +Y+GL+ VI ++ 
Sbjct: 1   MRILGIDPGTRITGYGLIEKIGNRLLHVDNGAIYTRTDAPLADRLKTIYDGLSRVIADYA 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P   AVE++FV K+A++ LKLG AR +A+L+   A +PV+EY    +K+AV+G G   K 
Sbjct: 61  PTGVAVERIFVAKNALSALKLGHARGVAMLAGVNASLPVAEYTAVEVKQAVVGYGRAAKP 120

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
           Q+  M+++L+       +DA+DALA+A+CHA+
Sbjct: 121 QVQQMVRVLLNLPEIAQEDASDALAVAICHAH 152


>gi|237746838|ref|ZP_04577318.1| crossover junction endodeoxyribonuclease ruvC [Oxalobacter
           formigenes HOxBLS]
 gi|229378189|gb|EEO28280.1| crossover junction endodeoxyribonuclease ruvC [Oxalobacter
           formigenes HOxBLS]
          Length = 181

 Score =  232 bits (593), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 64/152 (42%), Positives = 100/152 (65%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++I+GIDPGLR TG+GI+   G+ L +++SGT+ +     L  RL  +++G+ ++I  +R
Sbjct: 1   MKILGIDPGLRTTGFGIIHKKGNALHYIASGTVKTPAEAGLPLRLKTIFDGVNEIITQYR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ AA+E+VFVN +  +TL LGQAR  AI +   + + V E+    IK+AV+G G   KK
Sbjct: 61  PDCAAIEKVFVNVNPQSTLLLGQARGAAISALVASELAVYEFTALQIKQAVVGHGKAQKK 120

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
           Q+  M++ L+      G DAADAL +A+CHA+
Sbjct: 121 QVQEMVQRLLSLPGIPGSDAADALGVAICHAH 152


>gi|257066396|ref|YP_003152652.1| crossover junction endodeoxyribonuclease RuvC [Anaerococcus
           prevotii DSM 20548]
 gi|256798276|gb|ACV28931.1| crossover junction endodeoxyribonuclease RuvC [Anaerococcus
           prevotii DSM 20548]
          Length = 164

 Score =  232 bits (592), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 50/152 (32%), Positives = 90/152 (59%), Gaps = 1/152 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPG+   G+G+++   + +  + +G + +  +     RL  LY+ L ++I+ ++
Sbjct: 1   MRILGIDPGIAIMGYGVIEFKENKIKVLENGVVTTSSKTKTGKRLELLYDNLHEIIEEFK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+E A+E++F N +    + +G AR I +L      +P+ EY P  IK+A+ G G   K 
Sbjct: 61  PDEFAIEELFFNSNVKTAIIVGHARGIQVLCAQQKGLPIYEYTPLQIKQAITGYGRASKS 120

Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHA 155
           Q+ + +  L+   +  K  DAADAL++A+CHA
Sbjct: 121 QMQLTITQLLNLKAIPKPDDAADALSVALCHA 152


>gi|17545222|ref|NP_518624.1| Holliday junction resolvase [Ralstonia solanacearum GMI1000]
 gi|20978746|sp|Q8Y233|RUVC_RALSO RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|17427513|emb|CAD14031.1| probable crossover junction endodeoxyribonuclease ruvc
           (hollidayjunction nuclease ruvc) (holliday juction
           resolvase ruvc) protein [Ralstonia solanacearum GMI1000]
          Length = 181

 Score =  231 bits (591), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 66/152 (43%), Positives = 99/152 (65%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGLR TG+G+++  G  L +V+SGTI S     L  RL  LY+G++++++ +R
Sbjct: 1   MRILGIDPGLRTTGFGVLERHGHQLVYVASGTIKSDGNADLPSRLKTLYDGVSELVRTYR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ A++E+VFVN +  +TL LGQAR   I       +PV EY    +K+AV+G G  +K 
Sbjct: 61  PDCASIEKVFVNVNPQSTLLLGQARGAVICGLMSGNLPVFEYTALQLKQAVVGYGRANKD 120

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
           Q+  M+  L+      G DAADAL +A+CHA+
Sbjct: 121 QVQDMVVRLLNLEGRPGTDAADALGVAICHAH 152


>gi|125972704|ref|YP_001036614.1| crossover junction endodeoxyribonuclease RuvC [Clostridium
           thermocellum ATCC 27405]
 gi|256004863|ref|ZP_05429837.1| crossover junction endodeoxyribonuclease RuvC [Clostridium
           thermocellum DSM 2360]
 gi|281416892|ref|ZP_06247912.1| crossover junction endodeoxyribonuclease RuvC [Clostridium
           thermocellum JW20]
 gi|166233189|sp|A3DBU2|RUVC_CLOTH RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|125712929|gb|ABN51421.1| crossover junction endodeoxyribonuclease RuvC [Clostridium
           thermocellum ATCC 27405]
 gi|255991173|gb|EEU01281.1| crossover junction endodeoxyribonuclease RuvC [Clostridium
           thermocellum DSM 2360]
 gi|281408294|gb|EFB38552.1| crossover junction endodeoxyribonuclease RuvC [Clostridium
           thermocellum JW20]
 gi|316941060|gb|ADU75094.1| crossover junction endodeoxyribonuclease RuvC [Clostridium
           thermocellum DSM 1313]
          Length = 162

 Score =  231 bits (590), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 61/154 (39%), Positives = 90/154 (58%), Gaps = 1/154 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + I+GIDPG    G+GIV   G+    V  G I +     L  RL  LY GL ++I+ +R
Sbjct: 1   MIIMGIDPGFAIAGYGIVKYEGNKFTSVDYGAITTESSMELPKRLLVLYNGLKEIIEKYR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           PE  AVE++F NK+    L +G  R +A+L+ A + I V EY P  +K++++G G  +K 
Sbjct: 61  PEAIAVEELFFNKNIKTALAVGHGRGVAVLAAAQSGIDVFEYTPIQVKQSIVGYGRAEKT 120

Query: 125 QIHMMLKMLMPES-FFKGKDAADALAIAVCHAYH 157
           Q+  M+K ++      K  D ADALA+AVCHA+ 
Sbjct: 121 QVQQMVKAILNLPAIPKPDDVADALAVAVCHAHS 154


>gi|325479411|gb|EGC82507.1| crossover junction endodeoxyribonuclease RuvC [Anaerococcus
           prevotii ACS-065-V-Col13]
          Length = 164

 Score =  230 bits (589), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 52/152 (34%), Positives = 88/152 (57%), Gaps = 1/152 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + I+GIDPG+   G+G+++   + +  + +G I +  +     RL  LY+ L D+I  + 
Sbjct: 1   MIILGIDPGIAIMGYGVIEFKNNKVKVLENGVITTSSKTKTGKRLELLYDNLDDIINEFS 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+E A+E++F N +    + +G AR I +L      +P+ EY P  IK+A+ G G  +KK
Sbjct: 61  PDEFAIEELFFNANVKTAITVGHARGIQVLCAQKNNLPIYEYTPLQIKQAITGYGRANKK 120

Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHA 155
           Q+ + +  L+      K  DAADAL++A+CHA
Sbjct: 121 QMQLTITKLLNLKEIPKPDDAADALSVALCHA 152


>gi|302872059|ref|YP_003840695.1| crossover junction endodeoxyribonuclease RuvC [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302574918|gb|ADL42709.1| crossover junction endodeoxyribonuclease RuvC [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 166

 Score =  230 bits (589), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 55/162 (33%), Positives = 91/162 (56%), Gaps = 2/162 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVD-VAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++GIDPG+  TG+GI++   G     +  G I +      + R   LY  L  +I  +
Sbjct: 1   MRVLGIDPGIALTGYGIIESKNGSEFKVIDYGKIETSSSFKKSMRFLHLYTELCSIISLY 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +P+  A+E++F NK++   + +G+AR + IL+     + V EY P  +K+++ G G  DK
Sbjct: 61  QPDVVAIEELFFNKNSKTAITIGEARGVIILTCIQNNLSVYEYTPLQVKQSITGYGRADK 120

Query: 124 KQIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHANSGYYK 164
            QI  M+K L+      K  D ADALA+A+CH   ++S  Y+
Sbjct: 121 TQIQKMVKSLLGLSEIPKPDDVADALAVAMCHILSSSSVLYQ 162


>gi|207727948|ref|YP_002256342.1| crossover junction endodeoxyribonuclease ruvc (hollidayjunction
           nuclease ruvc) (holliday juction resolvase ruvc) protein
           [Ralstonia solanacearum MolK2]
 gi|206591191|emb|CAQ56803.1| crossover junction endodeoxyribonuclease ruvc (hollidayjunction
           nuclease ruvc) (holliday juction resolvase ruvc) protein
           [Ralstonia solanacearum MolK2]
          Length = 181

 Score =  230 bits (589), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 67/156 (42%), Positives = 102/156 (65%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGLR TG+G+++  G  L +V+SGTI S     L  RL  LY+G++++++ +R
Sbjct: 1   MRILGIDPGLRTTGFGVLERHGHQLVYVASGTIKSDGNADLPSRLKTLYDGVSELVRTYR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ A++E+VFVN +  +TL LGQAR  AI       +PV EY    +K AV+G G  +K+
Sbjct: 61  PDCASIEKVFVNVNPQSTLLLGQARGAAICGLVSGELPVFEYTALQLKLAVVGYGRANKE 120

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           Q+  M+  L+      G DAADAL +A+CHA+  ++
Sbjct: 121 QVQDMVVRLLNLEGRPGTDAADALGVAICHAHGGDT 156


>gi|53720505|ref|YP_109491.1| Holliday junction resolvase [Burkholderia pseudomallei K96243]
 gi|53726198|ref|YP_103913.1| Holliday junction resolvase [Burkholderia mallei ATCC 23344]
 gi|67642317|ref|ZP_00441075.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia mallei
           GB8 horse 4]
 gi|126451211|ref|YP_001082060.1| Holliday junction resolvase [Burkholderia mallei NCTC 10247]
 gi|126453395|ref|YP_001067636.1| Holliday junction resolvase [Burkholderia pseudomallei 1106a]
 gi|134280428|ref|ZP_01767139.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
           pseudomallei 305]
 gi|162210042|ref|YP_334776.2| Holliday junction resolvase [Burkholderia pseudomallei 1710b]
 gi|167000506|ref|ZP_02266318.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia mallei
           PRL-20]
 gi|167721173|ref|ZP_02404409.1| Holliday junction resolvase [Burkholderia pseudomallei DM98]
 gi|167740149|ref|ZP_02412923.1| Holliday junction resolvase [Burkholderia pseudomallei 14]
 gi|167817362|ref|ZP_02449042.1| Holliday junction resolvase [Burkholderia pseudomallei 91]
 gi|167825770|ref|ZP_02457241.1| Holliday junction resolvase [Burkholderia pseudomallei 9]
 gi|167847252|ref|ZP_02472760.1| Holliday junction resolvase [Burkholderia pseudomallei B7210]
 gi|167895839|ref|ZP_02483241.1| Holliday junction resolvase [Burkholderia pseudomallei 7894]
 gi|167904230|ref|ZP_02491435.1| Holliday junction resolvase [Burkholderia pseudomallei NCTC 13177]
 gi|167912489|ref|ZP_02499580.1| Holliday junction resolvase [Burkholderia pseudomallei 112]
 gi|167920441|ref|ZP_02507532.1| Holliday junction resolvase [Burkholderia pseudomallei BCC215]
 gi|217420409|ref|ZP_03451914.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
           pseudomallei 576]
 gi|226198409|ref|ZP_03793978.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
           pseudomallei Pakistan 9]
 gi|237813763|ref|YP_002898214.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
           pseudomallei MSHR346]
 gi|242316570|ref|ZP_04815586.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
           pseudomallei 1106b]
 gi|254180689|ref|ZP_04887287.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
           pseudomallei 1655]
 gi|254194911|ref|ZP_04901341.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
           pseudomallei S13]
 gi|254202625|ref|ZP_04908988.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia mallei
           FMH]
 gi|254207964|ref|ZP_04914314.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia mallei
           JHU]
 gi|254260095|ref|ZP_04951149.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
           pseudomallei 1710a]
 gi|254299225|ref|ZP_04966675.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
           pseudomallei 406e]
 gi|254355896|ref|ZP_04972174.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia mallei
           2002721280]
 gi|81604342|sp|Q62HA7|RUVC_BURMA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|81607715|sp|Q63QX7|RUVC_BURPS RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|91771932|sp|Q3JNS7|RUVC_BURP1 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|166231586|sp|A3MP74|RUVC_BURM7 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|166231587|sp|A3NZ65|RUVC_BURP0 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|52210919|emb|CAH36907.1| crossover junction endodeoxyribonuclease [Burkholderia pseudomallei
           K96243]
 gi|52429621|gb|AAU50214.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia mallei
           ATCC 23344]
 gi|126227037|gb|ABN90577.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
           pseudomallei 1106a]
 gi|126244081|gb|ABO07174.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia mallei
           NCTC 10247]
 gi|134248435|gb|EBA48518.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
           pseudomallei 305]
 gi|147746872|gb|EDK53949.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia mallei
           FMH]
 gi|147751858|gb|EDK58925.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia mallei
           JHU]
 gi|148024871|gb|EDK83049.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia mallei
           2002721280]
 gi|157808953|gb|EDO86123.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
           pseudomallei 406e]
 gi|169651660|gb|EDS84353.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
           pseudomallei S13]
 gi|184211228|gb|EDU08271.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
           pseudomallei 1655]
 gi|217395821|gb|EEC35838.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
           pseudomallei 576]
 gi|225929592|gb|EEH25610.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
           pseudomallei Pakistan 9]
 gi|237504363|gb|ACQ96681.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
           pseudomallei MSHR346]
 gi|238523445|gb|EEP86883.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia mallei
           GB8 horse 4]
 gi|242139809|gb|EES26211.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
           pseudomallei 1106b]
 gi|243063560|gb|EES45746.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia mallei
           PRL-20]
 gi|254218784|gb|EET08168.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
           pseudomallei 1710a]
          Length = 180

 Score =  230 bits (589), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 69/156 (44%), Positives = 103/156 (66%), Gaps = 1/156 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGLR TG+G++DV+G  L +V+SG I +     L  RL  +Y+G++ +I+   
Sbjct: 1   MRILGIDPGLRVTGFGVIDVSGHQLAYVASGVIKTPT-ADLPTRLGTIYDGVSTLIREHT 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P++AA+E+VFVN +  +TL LGQAR  AI       +PV+EY    +K+AV+G G   K+
Sbjct: 60  PDQAAIEKVFVNVNPQSTLLLGQARGAAICGLVSGGLPVAEYTALQLKQAVVGYGRATKE 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           Q+  M+  L+  S   G DAADAL +A+CHA+  N+
Sbjct: 120 QMQEMVARLLSLSGRPGTDAADALGMAICHAHGGNT 155


>gi|83749325|ref|ZP_00946322.1| Crossover junction endodeoxyribonuclease ruvC [Ralstonia
           solanacearum UW551]
 gi|207742354|ref|YP_002258746.1| crossover junction endodeoxyribonuclease ruvc (hollidayjunction
           nuclease ruvc) (holliday juction resolvase ruvc) protein
           [Ralstonia solanacearum IPO1609]
 gi|83724003|gb|EAP71184.1| Crossover junction endodeoxyribonuclease ruvC [Ralstonia
           solanacearum UW551]
 gi|206593744|emb|CAQ60671.1| crossover junction endodeoxyribonuclease ruvc (hollidayjunction
           nuclease ruvc) (holliday juction resolvase ruvc) protein
           [Ralstonia solanacearum IPO1609]
          Length = 181

 Score =  230 bits (589), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 70/166 (42%), Positives = 105/166 (63%), Gaps = 2/166 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGLR TG+G+++  G  L +V+SGTI S     L  RL  LY+G++++++ +R
Sbjct: 1   MRILGIDPGLRTTGFGVLERHGHQLVYVASGTIKSDGNADLPSRLKTLYDGVSELVRTYR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ A++E+VFVN +  +TL LGQAR  AI       +PV EY    +K AV+G G  +K+
Sbjct: 61  PDCASIEKVFVNVNPQSTLLLGQARGAAICGLVSGELPVFEYTALQLKLAVVGYGRANKE 120

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHAN--SGYYKIASQ 168
           Q+  M+  L+      G DAADAL +A+CHA+  +  S    +A Q
Sbjct: 121 QVQDMVVRLLNLEGRPGTDAADALGVAICHAHGGDTLSAMAGLAPQ 166


>gi|258514396|ref|YP_003190618.1| Holliday junction resolvase [Desulfotomaculum acetoxidans DSM 771]
 gi|257778101|gb|ACV61995.1| crossover junction endodeoxyribonuclease RuvC [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 159

 Score =  230 bits (588), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 58/156 (37%), Positives = 92/156 (58%), Gaps = 1/156 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + I+G+DPG   TG+G+V   G+    V    I +  +   A RL  LY  L  ++  +R
Sbjct: 1   MIILGVDPGTAITGYGLVSFHGNRFSTVEYNCIKTPAKMEPADRLLILYRELEKILLKYR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  AVE++F N +A   L +GQAR + +L  A+A + V EY P  +K+AV+G G  +K+
Sbjct: 61  PDRMAVEKLFFNTNARTALAVGQARGVVLLLGAMAGLRVYEYTPLEVKQAVVGYGRAEKE 120

Query: 125 QIHMMLKMLM-PESFFKGKDAADALAIAVCHAYHAN 159
           Q+  M+K ++      +  D ADALA+A+CHA++ N
Sbjct: 121 QVQYMVKAILCLPEIPRPDDVADALAVAICHAHYGN 156


>gi|309388949|gb|ADO76829.1| crossover junction endodeoxyribonuclease RuvC [Halanaerobium
           praevalens DSM 2228]
          Length = 165

 Score =  230 bits (588), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 58/161 (36%), Positives = 99/161 (61%), Gaps = 3/161 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGL   G+ +VD   ++   +  G I +        RL  ++  + +++K ++
Sbjct: 1   MRILGIDPGLATIGYALVDKETNHFDVLEYGVIKTSADTENIKRLEIIHRNIEELVKEFK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+E AVE++F NK+    + +GQAR + +L+ + A + V+EY P  IK+AV+G G  DK 
Sbjct: 61  PKEMAVEELFFNKNVKTAIAVGQARGVILLAGSQAGLKVAEYTPLQIKQAVVGYGRADKM 120

Query: 125 QIHMMLKMLMPESF-FKGKDAADALAIAVCHAY--HANSGY 162
           Q+  M+K L+  S   +  DAADALA+++CH +   ++SG+
Sbjct: 121 QVQQMVKSLLNLSELPRPDDAADALAVSICHGHVYSSHSGW 161


>gi|300692486|ref|YP_003753481.1| endodeoxyribonuclease, subunit C of RuvABC Holliday junction
           resolvasome [Ralstonia solanacearum PSI07]
 gi|299079546|emb|CBJ52224.1| endodeoxyribonuclease, subunit C of RuvABC Holliday junction
           resolvasome [Ralstonia solanacearum PSI07]
          Length = 181

 Score =  230 bits (588), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 70/166 (42%), Positives = 104/166 (62%), Gaps = 2/166 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGLR TG+G+++  G  L +V+SGTI S     L  RL  LY+G++++++ +R
Sbjct: 1   MRILGIDPGLRTTGFGVLERHGHQLVYVASGTIKSDGNADLPSRLKTLYDGVSELVRIYR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ A++E+VFVN +  +TL LGQAR  AI       +PV EY    +K AV+G G  +K+
Sbjct: 61  PDCASIEKVFVNVNPQSTLLLGQARGAAICGLVSGDLPVFEYTALQLKLAVVGYGRANKE 120

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHAN--SGYYKIASQ 168
           Q+  M+  L+      G DAADAL +A+CHA+     S    +A Q
Sbjct: 121 QVQDMVVRLLNLEGRPGSDAADALGVAICHAHGGETLSAMAGLAPQ 166


>gi|126439331|ref|YP_001060375.1| Holliday junction resolvase [Burkholderia pseudomallei 668]
 gi|166231588|sp|A3NDF4|RUVC_BURP6 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|126218824|gb|ABN82330.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
           pseudomallei 668]
          Length = 180

 Score =  230 bits (587), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 69/156 (44%), Positives = 103/156 (66%), Gaps = 1/156 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGLR TG+G++DV+G  L +V+SG I +     L  RL  +Y+G++ +I+   
Sbjct: 1   MRILGIDPGLRVTGFGVIDVSGHQLAYVASGVIKTPT-ADLPTRLGTIYDGVSTLIREHT 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P++AA+E+VFVN +  +TL LGQAR  AI       +PV+EY    +K+AV+G G   K+
Sbjct: 60  PDQAAIEKVFVNVNPQSTLLLGQARGAAICGLVSGGLPVAEYTALQLKQAVVGYGRATKE 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           Q+  M+  L+  S   G DAADAL +A+CHA+  N+
Sbjct: 120 QMQEMVAQLLSLSGRPGTDAADALGMAICHAHGGNT 155


>gi|297539688|ref|YP_003675457.1| crossover junction endodeoxyribonuclease RuvC [Methylotenera sp.
           301]
 gi|297259035|gb|ADI30880.1| crossover junction endodeoxyribonuclease RuvC [Methylotenera sp.
           301]
          Length = 187

 Score =  230 bits (587), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 69/177 (38%), Positives = 108/177 (61%), Gaps = 12/177 (6%)

Query: 3   KSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVS-----------CVRQSLAFRLCQ 51
            ++RI+GIDPGLR TG+G+++  G+ + ++SSGTI +             R+ L  RL  
Sbjct: 2   SNVRILGIDPGLRLTGFGVIEKVGEKITYISSGTIKTASGKKNKVEGEDDREELPARLKI 61

Query: 52  LYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTI 111
           + +GL +VI  ++P + A+E+VFVN +  +TL LGQAR  AI +  +  + V+EY    +
Sbjct: 62  ILDGLFEVIDTYQPNQVAIEKVFVNINPQSTLLLGQARGAAISAAVIRNLSVAEYTALQV 121

Query: 112 KKAVIGVGHGDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
           K+AV+G GH  K+Q+  M+K L+        D+ADALA A+CHA+    G  K+A+ 
Sbjct: 122 KQAVVGNGHAQKEQVQEMVKRLLNLPATPKPDSADALACAICHAH-GGQGLGKLATA 177


>gi|325981221|ref|YP_004293623.1| Crossover junction endodeoxyribonuclease ruvC [Nitrosomonas sp.
           AL212]
 gi|325530740|gb|ADZ25461.1| Crossover junction endodeoxyribonuclease ruvC [Nitrosomonas sp.
           AL212]
          Length = 172

 Score =  230 bits (587), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 73/163 (44%), Positives = 105/163 (64%), Gaps = 2/163 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGL  TG+G++D  G NL +VSSG++ +     L FRL  + + L+++I  +R
Sbjct: 1   MRILGIDPGLCITGFGVIDKNGSNLTYVSSGSVKTSKG-ELPFRLKLILDNLSEIINRYR 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  ++EQVFVN +  +TL LGQAR  AI +  +  + V+EY    IK+AV+G GH  K 
Sbjct: 60  PQHVSIEQVFVNINPKSTLLLGQARGAAICAAVMNDLTVAEYTALQIKQAVVGNGHAKKD 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
           Q+  M+  L+  S   G DAADALA A+CHA +   G  KIA+
Sbjct: 120 QVQEMVVRLLKLSGSPGTDAADALACAICHA-NGGLGLGKIAT 161


>gi|332977849|gb|EGK14602.1| crossover junction endoribonuclease subunit C [Desmospora sp. 8437]
          Length = 167

 Score =  230 bits (587), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 57/156 (36%), Positives = 94/156 (60%), Gaps = 1/156 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RIIGIDPG+   G+G++D  G+ L  V  G+I +    S A RL Q+Y+ +T++ + +R
Sbjct: 1   MRIIGIDPGIAIVGYGVIDRQGNRLKAVDYGSIQTEAGLSTATRLKQIYDEVTELYQKFR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  A+E++F N++      +GQAR + +L+   A   ++EY P  +K AV+G G   K+
Sbjct: 61  PDVVAIEKLFFNRNVTTAFTVGQARGVLMLAAEEAGAVITEYTPLQVKMAVVGYGQAQKR 120

Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHAN 159
           QI  M+++L+      K  D ADAL +A+C A+   
Sbjct: 121 QIQEMVRILLNLPEIPKPDDVADALGVAICEAHSNT 156


>gi|323496588|ref|ZP_08101641.1| Holliday junction resolvase [Vibrio sinaloensis DSM 21326]
 gi|323318334|gb|EGA71292.1| Holliday junction resolvase [Vibrio sinaloensis DSM 21326]
          Length = 173

 Score =  230 bits (587), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 62/154 (40%), Positives = 98/154 (63%), Gaps = 1/154 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G +L ++ SG I +  +  L  RL Q++ G++++I  ++P+
Sbjct: 4   ILGIDPGSRITGYGVIRQNGRHLQYLGSGCIRTSEK-ELPGRLKQIFAGVSEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ ++A + LKLGQAR  AI++     +PV EYA   IK+AV G G  DK+Q+
Sbjct: 63  VFAIEQVFMARNADSALKLGQARGSAIVAAVNNDLPVYEYAARLIKQAVTGTGGADKEQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
             M++ ++        DAADAL +A+CHA    +
Sbjct: 123 QHMVQQMLKLPGKPQADAADALGVAICHANTNKT 156


>gi|299067937|emb|CBJ39151.1| endodeoxyribonuclease, subunit C of RuvABC Holliday junction
           resolvasome [Ralstonia solanacearum CMR15]
          Length = 181

 Score =  230 bits (587), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 66/152 (43%), Positives = 99/152 (65%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGLR TG+G+++  G  L +V+SGTI S     L  RL  LY+G++++++ +R
Sbjct: 1   MRILGIDPGLRTTGFGVLERHGHQLVYVASGTIKSDGNADLPSRLKTLYDGVSELVRIYR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ A++E+VFVN +  +TL LGQAR   I       +PV EY    +K+AV+G G  +K 
Sbjct: 61  PDCASIEKVFVNVNPQSTLLLGQARGAVICGLMSGNLPVFEYTALQLKQAVVGYGRANKD 120

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
           Q+  M+  L+      G DAADAL +A+CHA+
Sbjct: 121 QVQDMVVRLLNLEGRPGTDAADALGVAICHAH 152


>gi|134294767|ref|YP_001118502.1| Holliday junction resolvase [Burkholderia vietnamiensis G4]
 gi|166231589|sp|A4JBL4|RUVC_BURVG RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|134137924|gb|ABO53667.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
           vietnamiensis G4]
          Length = 180

 Score =  230 bits (587), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 69/156 (44%), Positives = 103/156 (66%), Gaps = 1/156 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGLR TG+G++DV+G  L +V+SG I +     LA RL  +++G++ +++   
Sbjct: 1   MRILGIDPGLRVTGFGVIDVSGHRLAYVASGVIRTPT-ADLATRLGTIFQGVSTLVREHA 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P++AA+EQVFVN +  +TL LGQAR  AI       +PV+EY    +K+AV+G G   K 
Sbjct: 60  PDQAAIEQVFVNVNPQSTLLLGQARGAAICGLVAGGLPVAEYTALQLKQAVVGYGRATKS 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           Q+  M+  L+  S   G DAADAL +A+CHA+  N+
Sbjct: 120 QMQEMVTRLLNLSGQPGSDAADALGMAICHAHSGNT 155


>gi|227484941|ref|ZP_03915257.1| crossover junction endodeoxyribonuclease [Anaerococcus lactolyticus
           ATCC 51172]
 gi|227237096|gb|EEI87111.1| crossover junction endodeoxyribonuclease [Anaerococcus lactolyticus
           ATCC 51172]
          Length = 164

 Score =  230 bits (587), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 48/151 (31%), Positives = 88/151 (58%), Gaps = 1/151 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + ++GIDPG+   G+G+V+   + +  + +G + +  +     RL  LY+ L  +IK ++
Sbjct: 1   MIVLGIDPGIAIMGYGVVEFKSNKVKVLENGVVTTSSKTRTPERLKILYDNLDKIIKEFK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+E A+E++F N++    + +G AR + +L      + + EY P  IK+A+ G G  DK+
Sbjct: 61  PDEFAIEELFFNQNVKTAITVGHARGVQVLCAQDNGLDIYEYTPLQIKQAITGYGRADKQ 120

Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCH 154
           Q+ + +  L+      K  DAADAL++A+CH
Sbjct: 121 QMQLTITTLLNLKEIPKPDDAADALSVALCH 151


>gi|323495174|ref|ZP_08100259.1| Holliday junction resolvase [Vibrio brasiliensis LMG 20546]
 gi|323310614|gb|EGA63793.1| Holliday junction resolvase [Vibrio brasiliensis LMG 20546]
          Length = 173

 Score =  230 bits (587), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 64/154 (41%), Positives = 99/154 (64%), Gaps = 1/154 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G +L ++ SG I +  +  L  RL Q+Y G++++I  ++P+
Sbjct: 4   ILGIDPGSRITGYGVIRQNGRHLQYLGSGCIRTSEK-ELPGRLKQIYAGVSEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ ++A + LKLGQAR  AI++   A +PV EYA   IK+AV G G  DK+Q+
Sbjct: 63  VFAIEQVFMARNADSALKLGQARGSAIVAAVNADLPVYEYAARLIKQAVTGTGGADKEQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
             M++ ++        DAADAL +A+CHA    +
Sbjct: 123 QHMVQQMLKLPGKPQADAADALGVAICHANTNKT 156


>gi|152979958|ref|YP_001351999.1| Holliday junction resolvase [Janthinobacterium sp. Marseille]
 gi|166233199|sp|A6SUQ2|RUVC_JANMA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|151280035|gb|ABR88445.1| crossover junction endodeoxyribonuclease [Janthinobacterium sp.
           Marseille]
          Length = 180

 Score =  230 bits (587), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 64/154 (41%), Positives = 99/154 (64%), Gaps = 1/154 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++I+GIDPGLR TG+G+++  G+ L +++SGTI +     L  RL  +   +++VI  + 
Sbjct: 1   MKILGIDPGLRTTGFGVIEKHGNKLTYIASGTIKTP-DADLPQRLKTILSSVSEVIATYH 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ AA+E+VFVN +  +TL LGQAR  AI +   A + V+EY    +K+AV+G G   K 
Sbjct: 60  PDCAAIEKVFVNVNPQSTLLLGQARGAAICALVHADLLVAEYTALQVKQAVVGQGKAQKA 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHA 158
           Q+  M++ L+  S   G DAADAL +A+CHA+  
Sbjct: 120 QVQDMVQRLLKLSGLPGTDAADALGVAICHAHSG 153


>gi|56477501|ref|YP_159090.1| Holliday junction resolvase [Aromatoleum aromaticum EbN1]
 gi|56313544|emb|CAI08189.1| Crossover junction endodeoxyribonuclease RuvC [Aromatoleum
           aromaticum EbN1]
          Length = 203

 Score =  229 bits (586), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 65/165 (39%), Positives = 97/165 (58%), Gaps = 1/165 (0%)

Query: 4   SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           + RI+G+DPGLR TG+G++D  G+ L +V+SG I +     L  RL  L +G+ +V+  +
Sbjct: 27  ATRILGLDPGLRITGFGVIDKLGNQLRYVASGCIRTR-DGELPGRLKTLLDGVREVVAAY 85

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P++ AVE+VFVN +  +TL LGQAR   I       +PV EY    +K+AV+G G   K
Sbjct: 86  TPDQVAVEKVFVNVNPQSTLLLGQARGAVICGAVSCDLPVHEYTALQVKQAVVGYGKAAK 145

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
           +Q+  M++ L+        DAADALA A+CHA+         A +
Sbjct: 146 EQVQHMVQRLLALDGCPSPDAADALACAICHAHGGQGTAGAFAGR 190


>gi|294782151|ref|ZP_06747477.1| crossover junction endodeoxyribonuclease RuvC [Fusobacterium sp.
           1_1_41FAA]
 gi|294480792|gb|EFG28567.1| crossover junction endodeoxyribonuclease RuvC [Fusobacterium sp.
           1_1_41FAA]
          Length = 194

 Score =  229 bits (586), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 53/166 (31%), Positives = 86/166 (51%), Gaps = 1/166 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R+IGIDPG    G+GI+D   +    V  G I++    S   RL  +Y  L  ++K ++
Sbjct: 1   MRVIGIDPGTAIVGYGIIDYNKNKYSIVDYGVILTSKDLSNEERLEIVYNELDKILKKYK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           PE  A+E +F  K+    + + QAR + +L+     IP+S Y P  +K  + G G  +KK
Sbjct: 61  PEFMAIEDLFYFKNNKTVISVAQARGVILLAGKQNNIPISNYTPLQVKIGITGYGKAEKK 120

Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHANSGYYKIASQD 169
           Q+ +M++  +      K  DAADALAI + H    +S      + +
Sbjct: 121 QVQLMVQKFLGLSEIPKPDDAADALAICITHINSLSSNISFTGTSN 166


>gi|227499582|ref|ZP_03929689.1| crossover junction endodeoxyribonuclease [Anaerococcus tetradius
           ATCC 35098]
 gi|227218341|gb|EEI83595.1| crossover junction endodeoxyribonuclease [Anaerococcus tetradius
           ATCC 35098]
          Length = 164

 Score =  229 bits (585), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 50/152 (32%), Positives = 87/152 (57%), Gaps = 1/152 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + I+GIDPG+   G+GI++   + +  + +G + +  +     RL  LY+ L  +IK ++
Sbjct: 1   MIILGIDPGIAIMGYGIIEFKENKVKVLENGVVTTSSKTKTGRRLELLYDNLHQIIKEFK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+E A+E++F N +    + +G AR + +L      +P+ EY P  IK+A+ G G   K 
Sbjct: 61  PDEFAIEELFFNSNVKTAITVGHARGVQVLCAQQNMLPIYEYTPLQIKQAITGYGRASKS 120

Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHA 155
           Q+ + +  L+      K  DAADAL++A+CHA
Sbjct: 121 QMQLTVTRLLNLKEMPKPDDAADALSVALCHA 152


>gi|167837834|ref|ZP_02464717.1| Holliday junction resolvase [Burkholderia thailandensis MSMB43]
          Length = 180

 Score =  229 bits (585), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 69/156 (44%), Positives = 104/156 (66%), Gaps = 1/156 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGLR TG+G++DV+G  L +V+SG I +     L  RL  +Y+G++ +I+   
Sbjct: 1   MRILGIDPGLRVTGFGVIDVSGHRLAYVASGVIKTPT-ADLPTRLGTIYDGISTLIREHA 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P++AA+E+VFVN +  +TL LGQAR  AI      R+PV+EY    +K+AV+G G   K+
Sbjct: 60  PDQAAIEKVFVNVNPQSTLLLGQARGAAICGLVSGRLPVAEYTALQLKQAVVGYGRATKE 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           Q+  M+  L+  S   G DAADAL +A+CHA+  ++
Sbjct: 120 QMQEMVARLLSLSGLPGTDAADALGMAICHAHGGDT 155


>gi|300023945|ref|YP_003756556.1| crossover junction endodeoxyribonuclease RuvC [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299525766|gb|ADJ24235.1| crossover junction endodeoxyribonuclease RuvC [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 175

 Score =  229 bits (585), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 82/159 (51%), Positives = 112/159 (70%)

Query: 2   RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
            ++IRIIG DPGLRRTGWGIV+  G  L +V+SG I       LA+RL  L++ +T VI+
Sbjct: 3   ARAIRIIGFDPGLRRTGWGIVESDGVRLVYVASGVITPPKDDDLAYRLSALFDAVTSVIQ 62

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
           ++ P EAAVE+ FVN++  +TLKLGQAR   +L+PA   + V+EY PN IKK+V G GH 
Sbjct: 63  SFSPSEAAVEETFVNENPRSTLKLGQARGAILLAPARLGLRVAEYTPNLIKKSVTGTGHA 122

Query: 122 DKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           +K+QI  M+  L+P++ F   D ADALAIA+ HA+H +S
Sbjct: 123 EKQQIQAMISFLLPKATFDSADEADALAIAITHAHHRSS 161


>gi|167564062|ref|ZP_02356978.1| Holliday junction resolvase [Burkholderia oklahomensis EO147]
          Length = 180

 Score =  229 bits (585), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 70/156 (44%), Positives = 103/156 (66%), Gaps = 1/156 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RIIGIDPGLR TG+G++DV+G  L +V+SG I +     L  RL  +Y+G++ +I+   
Sbjct: 1   MRIIGIDPGLRVTGFGVIDVSGHQLAYVASGVIKTPT-ADLPTRLGTIYDGISTLIREHT 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P++AA+E+VFVN +  +TL LGQAR  AI       +PV+EY    +K+AV+G G   K+
Sbjct: 60  PDQAAIEKVFVNVNPQSTLLLGQARGAAICGLVSGGLPVAEYTALQLKQAVVGYGRATKE 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           Q+  M+  L+  S   G DAADAL +A+CHA+  N+
Sbjct: 120 QMQEMVARLLSLSGRPGTDAADALGMAICHAHGGNT 155


>gi|212635160|ref|YP_002311685.1| Holliday junction resolvase [Shewanella piezotolerans WP3]
 gi|226725476|sp|B8CNX9|RUVC_SHEPW RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|212556644|gb|ACJ29098.1| Crossover junction endodeoxyribonuclease RuvC [Shewanella
           piezotolerans WP3]
          Length = 173

 Score =  229 bits (584), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 66/162 (40%), Positives = 102/162 (62%), Gaps = 2/162 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+G+DPG R TG+G+++  G    +V SG I +     L  RL Q+++GL+++I+ ++P+
Sbjct: 4   ILGVDPGSRITGYGVINCVGRQQVYVGSGCIRTSSD-ELPLRLKQIFDGLSEIIRQYQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E+VF+ K+A + LKLGQAR  AI++   A +PV+EY+   IK AV+G G   K Q+
Sbjct: 63  EFAIERVFMAKNADSALKLGQARGAAIVAATAANLPVAEYSATQIKSAVVGTGRAQKSQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
             M++ L+        DAADAL +AVCH YH N     +  +
Sbjct: 123 QHMIQQLLKLPSAPQADAADALGVAVCH-YHTNQSLAAMGGR 163


>gi|322420881|ref|YP_004200104.1| crossover junction endodeoxyribonuclease RuvC [Geobacter sp. M18]
 gi|320127268|gb|ADW14828.1| crossover junction endodeoxyribonuclease RuvC [Geobacter sp. M18]
          Length = 164

 Score =  229 bits (584), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 63/155 (40%), Positives = 99/155 (63%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + I+GIDPG R+TG+G++   G+ L  + +G I +   +    RL +++ GL+ VI  ++
Sbjct: 1   MIILGIDPGSRKTGYGLISKQGNRLVHIDNGAIFTQSAKDFPQRLEKIFTGLSAVIAQYQ 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           PE  AVE VF+ K+A++ LKLGQAR  AI++     +PV EY    +K+AV+G G  +K 
Sbjct: 61  PEVVAVENVFLAKNAMSALKLGQARGAAIVAAVNVGLPVHEYTAMQVKQAVVGTGRAEKA 120

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHAN 159
           Q+  M+K L+       +DA+DALA+A+CHA+ A 
Sbjct: 121 QVQQMIKALLNLPEVAQEDASDALAVAICHAHSAG 155


>gi|254463445|ref|ZP_05076861.1| crossover junction endodeoxyribonuclease RuvC [Rhodobacterales
           bacterium HTCC2083]
 gi|206680034|gb|EDZ44521.1| crossover junction endodeoxyribonuclease RuvC [Rhodobacteraceae
           bacterium HTCC2083]
          Length = 225

 Score =  229 bits (584), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 81/159 (50%), Positives = 108/159 (67%), Gaps = 1/159 (0%)

Query: 2   RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
             S+R++GIDPGLR  GWG+++V G  +  + +G   S  +  L  RL  L+  LTDV+ 
Sbjct: 55  ASSMRVLGIDPGLRNMGWGVIEVDGSRMRHLGNGVCKSEGK-DLGLRLLSLHRQLTDVLC 113

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
            ++P  AAVEQ FVNKD   TLKLGQAR IA+L PA A + + EYAPN +KK V+GVGH 
Sbjct: 114 EFQPTTAAVEQTFVNKDGAGTLKLGQARGIALLVPAQAGLEIGEYAPNKVKKTVVGVGHA 173

Query: 122 DKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
            K+Q+  M+K+ +P    KG DAADALAIA+CHA++  S
Sbjct: 174 AKEQVQHMVKLQLPGVVLKGPDAADALAIAMCHAHYTRS 212


>gi|237740695|ref|ZP_04571176.1| crossover junction endodeoxyribonuclease ruvC [Fusobacterium sp.
           2_1_31]
 gi|229422712|gb|EEO37759.1| crossover junction endodeoxyribonuclease ruvC [Fusobacterium sp.
           2_1_31]
          Length = 190

 Score =  229 bits (584), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 53/166 (31%), Positives = 86/166 (51%), Gaps = 1/166 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R+IGIDPG    G+GI+D   +    V  G I++    S   RL  +Y  L  ++K ++
Sbjct: 1   MRVIGIDPGTAIVGYGIIDYNKNKYSIVDYGVILTSKDLSNEERLEIVYNELDKILKKYK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           PE  A+E +F  K+    + + QAR + +L+     IP+S Y P  +K  + G G  +KK
Sbjct: 61  PEFMAIEDLFYFKNNKTVISVAQARGVILLAGKQNNIPMSSYTPLQVKIGITGYGKAEKK 120

Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHANSGYYKIASQD 169
           Q+ +M++  +      K  DAADALAI + H    +S      + +
Sbjct: 121 QVQLMVQKFLGLSEIPKPDDAADALAICITHINSLSSNISFTGTSN 166


>gi|187925316|ref|YP_001896958.1| Holliday junction resolvase [Burkholderia phytofirmans PsJN]
 gi|238689471|sp|B2SYJ9|RUVC_BURPP RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|187716510|gb|ACD17734.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
           phytofirmans PsJN]
          Length = 180

 Score =  228 bits (583), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 66/156 (42%), Positives = 102/156 (65%), Gaps = 1/156 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGLR TG+G++D +G  L +V+SG I +     L  RL  ++EG++ +I+   
Sbjct: 1   MRILGIDPGLRVTGFGVIDQSGHTLSYVASGVIKT-ADADLPSRLGTIFEGISTLIRQHS 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+++A+E+VFVN +  +TL LGQAR  AI     + +PV+EY    +K+AV+G G   K+
Sbjct: 60  PDQSAIEKVFVNVNPQSTLLLGQARGAAICGLVASGVPVAEYTALQLKQAVVGYGRATKE 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           Q+  M+  L+  S   G DAADAL +A+CHA+   +
Sbjct: 120 QMQQMVVRLLNLSGVPGTDAADALGMAICHAHGGTT 155


>gi|262068025|ref|ZP_06027637.1| crossover junction endodeoxyribonuclease RuvC [Fusobacterium
           periodonticum ATCC 33693]
 gi|291378247|gb|EFE85765.1| crossover junction endodeoxyribonuclease RuvC [Fusobacterium
           periodonticum ATCC 33693]
          Length = 190

 Score =  228 bits (583), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 53/166 (31%), Positives = 86/166 (51%), Gaps = 1/166 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R+IGIDPG    G+GI+D   +    V  G I++    S   RL  +Y  L  ++K ++
Sbjct: 1   MRVIGIDPGTAIVGYGIIDYNKNKYSIVDYGVILTSKDLSNEERLEIVYNELDKILKKYK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           PE  A+E +F  K+    + + QAR + +L+     IP+S Y P  +K  + G G  +KK
Sbjct: 61  PEFMAIEDLFYFKNNKTVISVAQARGVILLAGKQNNIPMSNYTPLQVKIGITGYGKAEKK 120

Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHANSGYYKIASQD 169
           Q+ +M++  +      K  DAADALAI + H    +S      + +
Sbjct: 121 QVQLMVQKFLGLSEIPKPDDAADALAICITHINSLSSNISFTGTSN 166


>gi|170693380|ref|ZP_02884539.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
           graminis C4D1M]
 gi|170141535|gb|EDT09704.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
           graminis C4D1M]
          Length = 180

 Score =  228 bits (583), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 66/156 (42%), Positives = 101/156 (64%), Gaps = 1/156 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGLR TG+G++D +G  L +V+SG I +     L  RL  ++EG++ +I+   
Sbjct: 1   MRILGIDPGLRVTGFGVIDQSGHTLSYVASGVIKT-ADTDLPSRLGTIFEGISTLIRQHS 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+++A+E+VFVN +  +TL LGQAR  AI       +PV+EY    +K+AV+G G   K+
Sbjct: 60  PDQSAIEKVFVNVNPQSTLLLGQARGAAICGLVAGGVPVAEYTALQLKQAVVGYGRATKE 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           Q+  M+  L+  S   G DAADAL +A+CHA+   +
Sbjct: 120 QMQQMVVRLLNLSGVPGTDAADALGMAICHAHGGTT 155


>gi|97274509|sp|Q5P3C5|RUVC_AZOSE RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
          Length = 185

 Score =  228 bits (583), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 65/165 (39%), Positives = 97/165 (58%), Gaps = 1/165 (0%)

Query: 4   SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           + RI+G+DPGLR TG+G++D  G+ L +V+SG I +     L  RL  L +G+ +V+  +
Sbjct: 9   ATRILGLDPGLRITGFGVIDKLGNQLRYVASGCIRTR-DGELPGRLKTLLDGVREVVAAY 67

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P++ AVE+VFVN +  +TL LGQAR   I       +PV EY    +K+AV+G G   K
Sbjct: 68  TPDQVAVEKVFVNVNPQSTLLLGQARGAVICGAVSCDLPVHEYTALQVKQAVVGYGKAAK 127

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
           +Q+  M++ L+        DAADALA A+CHA+         A +
Sbjct: 128 EQVQHMVQRLLALDGCPSPDAADALACAICHAHGGQGTAGAFAGR 172


>gi|167571206|ref|ZP_02364080.1| Holliday junction resolvase [Burkholderia oklahomensis C6786]
          Length = 180

 Score =  228 bits (583), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 70/156 (44%), Positives = 103/156 (66%), Gaps = 1/156 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RIIGIDPGLR TG+G++DV+G  L +V+SG I +     L  RL  +Y+G++ +I+   
Sbjct: 1   MRIIGIDPGLRVTGFGVIDVSGHQLAYVASGVIKTPT-ADLPTRLGAIYDGISTLIREHT 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P++AA+E+VFVN +  +TL LGQAR  AI       +PV+EY    +K+AV+G G   K+
Sbjct: 60  PDQAAIEKVFVNVNPQSTLLLGQARGAAICGLVSGGLPVAEYTALQLKQAVVGYGRATKE 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           Q+  M+  L+  S   G DAADAL +A+CHA+  N+
Sbjct: 120 QMQEMVARLLSLSGRPGTDAADALGMAICHAHGGNT 155


>gi|306821004|ref|ZP_07454623.1| crossover junction endoribonuclease subunit C [Eubacterium yurii
           subsp. margaretiae ATCC 43715]
 gi|304550945|gb|EFM38917.1| crossover junction endoribonuclease subunit C [Eubacterium yurii
           subsp. margaretiae ATCC 43715]
          Length = 163

 Score =  228 bits (582), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 50/163 (30%), Positives = 94/163 (57%), Gaps = 1/163 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + ++G+DPG+   G+GI++   ++   +S G I +  +  L+ R+  +++ + ++I+ + 
Sbjct: 1   MIVLGVDPGIAIVGYGIIEYKNNSFKVLSYGAITTPAKTKLSSRIKIIHDDINELIRTYD 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
            E  A+E++F NK+    + +  AR + ++S     IPV EY P  +K+ V+G G  +KK
Sbjct: 61  IEALAIEELFFNKNVKTAIDVAHARGVIMVSAVNNNIPVYEYTPLQVKQGVVGYGRAEKK 120

Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHANSGYYKIA 166
           QI  M+K+++   S  K  D AD LA+A+CH +  N     +A
Sbjct: 121 QIQEMVKIILNLNSIPKPDDVADGLALAICHCHSINHSDLFLA 163


>gi|262404191|ref|ZP_06080746.1| crossover junction endodeoxyribonuclease RuvC [Vibrio sp. RC586]
 gi|262349223|gb|EEY98361.1| crossover junction endodeoxyribonuclease RuvC [Vibrio sp. RC586]
          Length = 173

 Score =  228 bits (582), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 69/162 (42%), Positives = 103/162 (63%), Gaps = 2/162 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G +L ++ SG I +   Q L  RL Q+Y G++++I  ++P+
Sbjct: 4   ILGIDPGSRVTGYGVIRQQGRHLIYLGSGCIRT-SEQDLPLRLKQIYAGVSEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR  AI++   A +PV EYA   IK+AV+G G  DK Q+
Sbjct: 63  AFAIEQVFMAKNADSALKLGQARGSAIVAAVNAELPVYEYAARLIKQAVVGTGAADKSQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
             M++ ++        DAADAL +A+CHA + N     +A Q
Sbjct: 123 QHMVQQMLKLPGKPQADAADALGVAICHA-NTNKTLIALAGQ 163


>gi|261211910|ref|ZP_05926197.1| crossover junction endodeoxyribonuclease RuvC [Vibrio sp. RC341]
 gi|260839260|gb|EEX65892.1| crossover junction endodeoxyribonuclease RuvC [Vibrio sp. RC341]
          Length = 173

 Score =  228 bits (582), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 68/162 (41%), Positives = 103/162 (63%), Gaps = 2/162 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G +L ++ SG I +   Q L  RL Q+Y G++++I  ++P+
Sbjct: 4   ILGIDPGSRVTGYGVIRQQGRHLIYLGSGCIRTS-EQELPLRLKQIYAGVSEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR  AI++   A +PV EYA   +K+AV+G G  DK Q+
Sbjct: 63  VFAIEQVFMAKNADSALKLGQARGSAIVAAVNAELPVYEYAARLVKQAVVGTGAADKSQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
             M++ ++        DAADAL +A+CHA + N     +A Q
Sbjct: 123 QHMVQQMLKLPGKPQSDAADALGVAICHA-NTNKTLIALAGQ 163


>gi|134093538|ref|YP_001098613.1| Holliday junction resolvase [Herminiimonas arsenicoxydans]
 gi|166233198|sp|A4G1U7|RUVC_HERAR RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|133737441|emb|CAL60484.1| Crossover junction endodeoxyribonuclease ruvC (Holliday junction
           nuclease ruvC) (Holliday juction resolvase ruvC)
           [Herminiimonas arsenicoxydans]
          Length = 180

 Score =  228 bits (582), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 64/154 (41%), Positives = 99/154 (64%), Gaps = 1/154 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++I+GIDPGLR TG+G+++  G+ L +++SGTI +     L  RL  +   + +VI  ++
Sbjct: 1   MKILGIDPGLRTTGFGVIEKQGNKLSYIASGTIKTP-DADLPQRLKTILVSVAEVIATYK 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ AA+E+VFVN +  +TL LGQAR  AI +   A + V+EY    +K+AV+G G   K 
Sbjct: 60  PDCAAIEKVFVNVNPQSTLLLGQARGAAICALVGADLFVAEYTALQVKQAVVGQGKAQKA 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHA 158
           Q+  M++ L+  S   G DAADAL +A+CHA+  
Sbjct: 120 QVQDMVQRLLKLSGLPGTDAADALGVAICHAHSG 153


>gi|254506056|ref|ZP_05118200.1| crossover junction endodeoxyribonuclease RuvC [Vibrio
           parahaemolyticus 16]
 gi|219550874|gb|EED27855.1| crossover junction endodeoxyribonuclease RuvC [Vibrio
           parahaemolyticus 16]
          Length = 173

 Score =  228 bits (582), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 64/154 (41%), Positives = 99/154 (64%), Gaps = 1/154 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G +L ++ SG I +  +  L  RL Q+Y G++++I  ++P+
Sbjct: 4   ILGIDPGSRITGYGVIRQNGRHLHYLGSGCIRTSEK-DLPGRLKQIYAGVSEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ ++A + LKLGQAR  AI++   A +PV EYA   IK+AV G G  DK+Q+
Sbjct: 63  VFAIEQVFMARNADSALKLGQARGSAIVAAVNAELPVHEYAARLIKQAVTGTGGADKEQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
             M++ ++        DAADAL +A+CHA    +
Sbjct: 123 QHMVQQMLKLPGKPQADAADALGVAICHANTNKT 156


>gi|238026247|ref|YP_002910478.1| Holliday junction resolvase [Burkholderia glumae BGR1]
 gi|237875441|gb|ACR27774.1| Crossover junction endodeoxyribonuclease RuvC [Burkholderia glumae
           BGR1]
          Length = 180

 Score =  227 bits (581), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 69/152 (45%), Positives = 103/152 (67%), Gaps = 1/152 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RIIGIDPGLR TG+G++DV G  L +V+SG I +     LA RL  +++G++ +++ +R
Sbjct: 1   MRIIGIDPGLRVTGFGVIDVHGSKLAYVTSGVIRTPS-ADLAVRLGTIFDGVSTLVREYR 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P++AA+E+VFVN +  +TL LGQAR  AI       +PV+EY P  +K+A++G G   K+
Sbjct: 60  PDQAAIEKVFVNVNPQSTLLLGQARGAAICGLVSGSLPVAEYTPTQLKQAIVGYGRATKE 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
           Q+  M+  L+  S   G DAADAL  A+CHA+
Sbjct: 120 QMQQMVVRLLGLSGLPGTDAADALGTAICHAH 151


>gi|221202295|ref|ZP_03575329.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
           multivorans CGD2M]
 gi|221209109|ref|ZP_03582103.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
           multivorans CGD2]
 gi|221171013|gb|EEE03466.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
           multivorans CGD2]
 gi|221177869|gb|EEE10282.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
           multivorans CGD2M]
          Length = 180

 Score =  227 bits (581), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 68/156 (43%), Positives = 102/156 (65%), Gaps = 1/156 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGLR TG+G++DV+G  L +V+SG I +     LA RL  ++ G++ +++   
Sbjct: 1   MRILGIDPGLRVTGFGVIDVSGHRLAYVASGVIRTPT-ADLATRLGTIFAGVSTLVREHA 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P++AA+E+VFVN +  +TL LGQAR  AI       +PV+EY    +K+A++G G   K 
Sbjct: 60  PDQAAIEKVFVNVNPQSTLLLGQARGAAICGLVSGGLPVAEYTALQLKQAIVGYGRATKA 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           Q+  M+  L+  S   G DAADAL IA+CHA+  N+
Sbjct: 120 QMQEMVTRLLSLSGQPGSDAADALGIAICHAHGGNT 155


>gi|115350637|ref|YP_772476.1| Holliday junction resolvase [Burkholderia ambifaria AMMD]
 gi|170699607|ref|ZP_02890646.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
           ambifaria IOP40-10]
 gi|171319640|ref|ZP_02908734.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
           ambifaria MEX-5]
 gi|122324003|sp|Q0BI81|RUVC_BURCM RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|115280625|gb|ABI86142.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
           ambifaria AMMD]
 gi|170135489|gb|EDT03778.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
           ambifaria IOP40-10]
 gi|171095131|gb|EDT40137.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
           ambifaria MEX-5]
          Length = 183

 Score =  227 bits (581), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 67/156 (42%), Positives = 103/156 (66%), Gaps = 1/156 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGLR TG+G++DV+G  L +V+SG I +     LA RL  +++G++ +++   
Sbjct: 1   MRILGIDPGLRVTGFGVIDVSGHRLAYVASGVIRTPT-ADLATRLGTIFQGVSTLVREHA 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P++AA+EQVFVN +  +TL LGQAR  AI       +PV+EY    +K+AV+G G   K 
Sbjct: 60  PDQAAIEQVFVNVNPQSTLLLGQARGAAICGLVSGGLPVAEYTALQLKQAVVGYGRATKS 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           Q+  M+  L+  +   G DAADAL +A+CHA+  ++
Sbjct: 120 QMQEMVTRLLNLTGQPGSDAADALGMAICHAHSGST 155


>gi|260779159|ref|ZP_05888051.1| crossover junction endodeoxyribonuclease RuvC [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260605323|gb|EEX31618.1| crossover junction endodeoxyribonuclease RuvC [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 173

 Score =  227 bits (581), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 65/154 (42%), Positives = 100/154 (64%), Gaps = 1/154 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G +L ++ SG I +  +  L  RL Q+Y G+T++I  ++P+
Sbjct: 4   ILGIDPGSRITGYGVIRQTGRHLHYLGSGCIRTSEK-ELPGRLKQIYAGVTEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ ++A + LKLGQAR  AI++   A +PV EYA   IK+AV+G G  DK+Q+
Sbjct: 63  VFAIEQVFMARNADSALKLGQARGSAIVAAVNADLPVYEYAARLIKQAVVGTGGADKEQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
             M++ ++        DAADAL +A+CHA    +
Sbjct: 123 QHMVQSMLKLPAKPQADAADALGVAICHANTNKT 156


>gi|153217381|ref|ZP_01951132.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae
           1587]
 gi|153827625|ref|ZP_01980292.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae
           MZO-2]
 gi|153830581|ref|ZP_01983248.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae
           623-39]
 gi|229515227|ref|ZP_04404687.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae TMA
           21]
 gi|229520307|ref|ZP_04409733.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae TM
           11079-80]
 gi|229523865|ref|ZP_04413270.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae bv.
           albensis VL426]
 gi|229529130|ref|ZP_04418520.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae
           12129(1)]
 gi|254292162|ref|ZP_04962933.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae
           AM-19226]
 gi|297579366|ref|ZP_06941294.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae
           RC385]
 gi|124113599|gb|EAY32419.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae
           1587]
 gi|148873943|gb|EDL72078.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae
           623-39]
 gi|149737897|gb|EDM52802.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae
           MZO-2]
 gi|150421925|gb|EDN13901.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae
           AM-19226]
 gi|229332904|gb|EEN98390.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae
           12129(1)]
 gi|229337446|gb|EEO02463.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae bv.
           albensis VL426]
 gi|229342673|gb|EEO07665.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae TM
           11079-80]
 gi|229347932|gb|EEO12891.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae TMA
           21]
 gi|297536960|gb|EFH75793.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae
           RC385]
 gi|327484399|gb|AEA78806.1| Crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae
           LMA3894-4]
          Length = 173

 Score =  227 bits (581), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 68/162 (41%), Positives = 102/162 (62%), Gaps = 2/162 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G +L ++ SG I +     L  RL Q+Y G++++I  ++P+
Sbjct: 4   ILGIDPGSRVTGYGVIRQQGRHLIYLGSGCIRT-SDLELPLRLKQIYAGVSEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR  AI++   A +PV EYA   IK+AV+G G  DK Q+
Sbjct: 63  AFAIEQVFMAKNADSALKLGQARGSAIVAAVNADLPVYEYAARLIKQAVVGTGAADKSQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
             M++ ++        DAADAL +A+CHA + N     +A Q
Sbjct: 123 QHMVQQMLKLPGKPQADAADALGVAICHA-NTNKTLIALAGQ 163


>gi|289422392|ref|ZP_06424238.1| crossover junction endodeoxyribonuclease RuvC [Peptostreptococcus
           anaerobius 653-L]
 gi|289157227|gb|EFD05846.1| crossover junction endodeoxyribonuclease RuvC [Peptostreptococcus
           anaerobius 653-L]
          Length = 164

 Score =  227 bits (581), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 52/154 (33%), Positives = 81/154 (52%), Gaps = 1/154 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + I+GIDPGL   G+GIV+        +  G I +        RL  +Y G+  +   + 
Sbjct: 1   MIILGIDPGLAIIGYGIVEYKNSKFRTIDYGAITTPAEMPTVERLDMIYRGMNQLFHLYD 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
            +E ++E++F NK+    + + QAR + +LS     +P+ EY P  +K+ V G G  DK 
Sbjct: 61  IDEISIEELFFNKNITTGITVAQARGVILLSCVQHSVPIYEYTPLQVKQGVCGYGRADKS 120

Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYH 157
           Q+  M+   +   S  K  D ADALAIA+CHA+ 
Sbjct: 121 QVQRMVTSFLNLKSVPKPDDVADALAIAICHAHS 154


>gi|282882970|ref|ZP_06291574.1| crossover junction endodeoxyribonuclease RuvC [Peptoniphilus
           lacrimalis 315-B]
 gi|281297177|gb|EFA89669.1| crossover junction endodeoxyribonuclease RuvC [Peptoniphilus
           lacrimalis 315-B]
          Length = 164

 Score =  227 bits (581), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 55/151 (36%), Positives = 90/151 (59%), Gaps = 1/151 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGL   G+GI+D  G++   VS G I +  +  +  RL  +Y  ++++I  ++
Sbjct: 1   MRILGIDPGLAIIGYGILDFKGNSFKTVSYGQINTPAKTPITDRLEMIYSQMSELIIKFK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P++ A E++F NK+    + + QAR + +L+       V EY P  IKK+++G G   K+
Sbjct: 61  PDDIAFEELFFNKNVKTAITVAQARGVEVLAARQFTRNVYEYTPLQIKKSLVGYGRATKE 120

Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCH 154
           QI  M+K+L+      K  D ADALA+A+ H
Sbjct: 121 QIQYMVKVLLNLNEVPKPDDVADALAVAITH 151


>gi|94264073|ref|ZP_01287872.1| Crossover junction endodeoxyribonuclease RuvC [delta
           proteobacterium MLMS-1]
 gi|93455489|gb|EAT05679.1| Crossover junction endodeoxyribonuclease RuvC [delta
           proteobacterium MLMS-1]
          Length = 154

 Score =  227 bits (581), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 63/153 (41%), Positives = 99/153 (64%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+G+DPG R TG+GI++  G+ L FV+ G I +   +++  RL  ++ GL +VI   +
Sbjct: 1   MRILGVDPGSRLTGYGIIEQRGNLLAFVACGVIRAEKAKTMPERLLLIHRGLDEVIACHQ 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P++AAVE +F   +  + LKLGQAR + IL+     +PV+EY P  +K+AV G G   K+
Sbjct: 61  PQQAAVEDIFTAVNPRSALKLGQARGVIILTLCRHGLPVAEYTPRMVKQAVAGYGQASKE 120

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYH 157
           Q+  M++ L+  +    +DAADALA+A+C A H
Sbjct: 121 QVQQMVRALLKLNANPSQDAADALAVAICRANH 153


>gi|37680471|ref|NP_935080.1| Holliday junction resolvase [Vibrio vulnificus YJ016]
 gi|320155870|ref|YP_004188249.1| crossover junction endodeoxyribonuclease RuvC [Vibrio vulnificus
           MO6-24/O]
 gi|44888368|sp|Q7MJ75|RUVC_VIBVY RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|37199219|dbj|BAC95051.1| crossover junction endodeoxyribonuclease RuvC [Vibrio vulnificus
           YJ016]
 gi|319931182|gb|ADV86046.1| crossover junction endodeoxyribonuclease RuvC [Vibrio vulnificus
           MO6-24/O]
          Length = 173

 Score =  227 bits (581), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 69/162 (42%), Positives = 102/162 (62%), Gaps = 2/162 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G +L ++ SG I +  +  L  RL Q+Y G+T++I  ++P+
Sbjct: 4   ILGIDPGSRVTGYGVIRQNGRHLQYLGSGCIRTSEK-DLPGRLKQIYAGVTEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR  AI+S     +PV EYA   IK+AV+G G  DK Q+
Sbjct: 63  VFAIEQVFMAKNADSALKLGQARGAAIVSAVNHDLPVYEYAARLIKQAVVGTGGADKAQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
             M++ ++        DAADAL +A+CHA + N     +A Q
Sbjct: 123 QHMVQHMLKLPAKPQADAADALGVAICHA-NTNKTLIALAGQ 163


>gi|91785163|ref|YP_560369.1| Holliday junction resolvase [Burkholderia xenovorans LB400]
 gi|296157350|ref|ZP_06840186.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia sp.
           Ch1-1]
 gi|123358466|sp|Q13UC2|RUVC_BURXL RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|91689117|gb|ABE32317.1| Crossover junction endodeoxyribonuclease RuvC [Burkholderia
           xenovorans LB400]
 gi|295892686|gb|EFG72468.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia sp.
           Ch1-1]
          Length = 180

 Score =  227 bits (581), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 66/156 (42%), Positives = 101/156 (64%), Gaps = 1/156 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGLR TG+G++D +G  L +V+SG I +     L  RL  ++EG++ +I+   
Sbjct: 1   MRILGIDPGLRVTGFGVIDQSGHTLSYVASGVIKT-ADADLPSRLGTIFEGISTLIRQHS 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+++A+E+VFVN +  +TL LGQAR  AI       +PV+EY    +K+AV+G G   K+
Sbjct: 60  PDQSAIEKVFVNVNPQSTLLLGQARGAAICGLVAGGVPVAEYTALQLKQAVVGYGRATKE 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           Q+  M+  L+  S   G DAADAL +A+CHA+   +
Sbjct: 120 QMQQMVVRLLNLSGVPGTDAADALGMAICHAHGGTT 155


>gi|164687539|ref|ZP_02211567.1| hypothetical protein CLOBAR_01180 [Clostridium bartlettii DSM
           16795]
 gi|164603313|gb|EDQ96778.1| hypothetical protein CLOBAR_01180 [Clostridium bartlettii DSM
           16795]
          Length = 165

 Score =  227 bits (581), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 51/153 (33%), Positives = 84/153 (54%), Gaps = 1/153 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + I+GIDPG+   G+GI++   +    +  G + +        RL  +Y+G+  +IK + 
Sbjct: 1   MVILGIDPGIAIVGYGIIEYKNNKFRVIDYGAVTTNANTPTDQRLALVYKGIDILIKKYD 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
            +E A+E++F NK+    + + QAR + +L+      P+ EY P  +K+ V+G G   K 
Sbjct: 61  IDEVAIEELFFNKNVKTAITVAQARGVIMLACTHNGKPIYEYTPLQVKQGVVGYGRAQKM 120

Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAY 156
           Q+  M+  L+      K  D ADALAIAVCHA+
Sbjct: 121 QVQQMVTSLLKLKEIPKPDDTADALAIAVCHAH 153


>gi|296535993|ref|ZP_06898137.1| crossover junction endoribonuclease subunit C [Roseomonas
           cervicalis ATCC 49957]
 gi|296263679|gb|EFH10160.1| crossover junction endoribonuclease subunit C [Roseomonas
           cervicalis ATCC 49957]
          Length = 168

 Score =  227 bits (581), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 75/156 (48%), Positives = 111/156 (71%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++G+DPGL+ TGWG+V+ +G  L  +  G I +    SLA RLCQ++  L  ++  W+
Sbjct: 2   VRLLGLDPGLQHTGWGVVESSGSRLRHLGDGVISTTADLSLAERLCQIHRALNTLLDLWK 61

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+EAAVE  +VNK+  A LKLGQAR + +L+PALA +PV+EY    +K+AV+G GH DK 
Sbjct: 62  PDEAAVEHTYVNKNPGAALKLGQARGVVLLAPALAGLPVAEYQAMEVKRAVVGTGHADKV 121

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           Q+  M++ L+P +  K  DA+DALA+A+CHA+H N+
Sbjct: 122 QVAEMVRRLLPGATLKRADASDALAVAICHAHHRNT 157


>gi|260768876|ref|ZP_05877810.1| crossover junction endodeoxyribonuclease RuvC [Vibrio furnissii CIP
           102972]
 gi|260616906|gb|EEX42091.1| crossover junction endodeoxyribonuclease RuvC [Vibrio furnissii CIP
           102972]
 gi|315180570|gb|ADT87484.1| Holliday junction resolvase [Vibrio furnissii NCTC 11218]
          Length = 173

 Score =  227 bits (581), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 68/162 (41%), Positives = 103/162 (63%), Gaps = 2/162 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G +L ++ SG I +  +  L  RL Q+Y G++++I  ++PE
Sbjct: 4   ILGIDPGSRITGYGVIRQQGRHLQYLGSGCIRTSEK-DLPLRLKQIYAGVSEIITQFQPE 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR  AI++   A +PV EYA   IK+AV+G G  +K Q+
Sbjct: 63  VFAIEQVFMAKNADSALKLGQARGSAIVAAVNADLPVFEYAARLIKQAVVGNGGAEKAQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
             M++ ++        DAADAL +A+CHA + N     +A Q
Sbjct: 123 QHMVQQMLKLPAKPQADAADALGVAICHA-NTNKTLIALAGQ 163


>gi|27365487|ref|NP_761015.1| Holliday junction resolvase [Vibrio vulnificus CMCP6]
 gi|29611845|sp|Q8DAN6|RUVC_VIBVU RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|27361635|gb|AAO10542.1| crossover junction endodeoxyribonuclease RuvC [Vibrio vulnificus
           CMCP6]
          Length = 173

 Score =  227 bits (580), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 69/162 (42%), Positives = 102/162 (62%), Gaps = 2/162 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G +L ++ SG I +  +  L  RL Q+Y G+T++I  ++P+
Sbjct: 4   ILGIDPGSRVTGYGVIRQNGRHLQYLGSGCIRTSEK-DLPGRLKQIYAGVTEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR  AI+S     +PV EYA   IK+AV+G G  DK Q+
Sbjct: 63  AFAIEQVFMAKNADSALKLGQARGAAIVSAVNHDLPVYEYAARLIKQAVVGTGGADKAQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
             M++ ++        DAADAL +A+CHA + N     +A Q
Sbjct: 123 QHMVQHMLKLPAKPQADAADALGVAICHA-NTNKTLIALAGQ 163


>gi|172059670|ref|YP_001807322.1| Holliday junction resolvase [Burkholderia ambifaria MC40-6]
 gi|238689179|sp|B1YTE1|RUVC_BURA4 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|171992187|gb|ACB63106.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
           ambifaria MC40-6]
          Length = 183

 Score =  227 bits (580), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 67/156 (42%), Positives = 103/156 (66%), Gaps = 1/156 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGLR TG+G++DV+G  L +V+SG I +     LA RL  +++G++ +++   
Sbjct: 1   MRILGIDPGLRVTGFGVIDVSGHRLAYVASGVIRTPT-ADLATRLGTIFQGVSTLVREHA 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P++AA+EQVFVN +  +TL LGQAR  AI       +PV+EY    +K+AV+G G   K 
Sbjct: 60  PDQAAIEQVFVNVNPQSTLLLGQARGAAICGLVSGGLPVAEYTALQLKQAVVGYGRATKS 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           Q+  M+  L+  +   G DAADAL +A+CHA+  ++
Sbjct: 120 QMQEMVTRLLNLTGQPGSDAADALGMAICHAHSGST 155


>gi|325529032|gb|EGD06042.1| Holliday junction resolvase [Burkholderia sp. TJI49]
          Length = 180

 Score =  227 bits (580), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 68/156 (43%), Positives = 103/156 (66%), Gaps = 1/156 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGLR TG+G++DV+G  L +V+SG I +     LA RL  +++G++ +++   
Sbjct: 1   MRILGIDPGLRVTGFGVIDVSGHRLAYVTSGVIRTPT-ADLATRLGTIFQGVSTLVREHA 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P++AA+E+VFVN +  +TL LGQAR  AI       +PV+EY    +K+AV+G G   K 
Sbjct: 60  PDQAAIEKVFVNVNPQSTLLLGQARGAAICGLVAGGLPVAEYTALQLKQAVVGYGRATKA 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           Q+  M+  L+  S   G DAADAL +A+CHA+  N+
Sbjct: 120 QMQEMVTRLLNLSGQPGSDAADALGMAICHAHGGNT 155


>gi|157962185|ref|YP_001502219.1| Holliday junction resolvase [Shewanella pealeana ATCC 700345]
 gi|189046081|sp|A8H547|RUVC_SHEPA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|157847185|gb|ABV87684.1| crossover junction endodeoxyribonuclease RuvC [Shewanella pealeana
           ATCC 700345]
          Length = 173

 Score =  227 bits (580), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 65/162 (40%), Positives = 102/162 (62%), Gaps = 2/162 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+G+DPG R TG+G++   G    +V SG I +     L  RL Q+++GL+++I+ ++P+
Sbjct: 4   ILGVDPGSRITGYGVIKCVGRQQVYVGSGCIRTSSD-ELPLRLKQIFDGLSEIIRQYQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E+VF+ K+A + LKLGQAR  AI++   A +PV+EY+   IK AV+G G   K Q+
Sbjct: 63  EFAIERVFMAKNADSALKLGQARGAAIVAATAANLPVAEYSATQIKSAVVGTGRAQKTQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
             M++ L+        DAADAL +AVCH + + S    +A +
Sbjct: 123 QHMIQQLLKLPSAPQADAADALGVAVCHYHTSQS-LVALAGR 163


>gi|297569180|ref|YP_003690524.1| crossover junction endodeoxyribonuclease RuvC [Desulfurivibrio
           alkaliphilus AHT2]
 gi|296925095|gb|ADH85905.1| crossover junction endodeoxyribonuclease RuvC [Desulfurivibrio
           alkaliphilus AHT2]
          Length = 167

 Score =  227 bits (580), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 64/159 (40%), Positives = 98/159 (61%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M    RI+G+DPG R TG+GI++  G  L F++ G +      SLA R+ ++++GL +VI
Sbjct: 1   MSGGERILGVDPGSRITGYGIIEQDGPRLRFITCGVLRVARYGSLAARILRIHQGLGEVI 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
              RP   AVE+VFV  +  A LKLG AR + +L+     +P++E+ P  +K+AV G G 
Sbjct: 61  SLHRPHRMAVEEVFVAGNPKAALKLGHARGVILLAAMQHNLPLAEFTPLVVKQAVAGYGR 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHAN 159
             K+Q+  M++ L+  S    +DAADALA+A+C A H +
Sbjct: 121 ASKEQVQRMVRSLLNLSASPSEDAADALAVAICGANHRS 159


>gi|107021767|ref|YP_620094.1| Holliday junction resolvase [Burkholderia cenocepacia AU 1054]
 gi|116688713|ref|YP_834336.1| Holliday junction resolvase [Burkholderia cenocepacia HI2424]
 gi|206561675|ref|YP_002232440.1| Holliday junction resolvase [Burkholderia cenocepacia J2315]
 gi|254246307|ref|ZP_04939628.1| Holliday junction resolvasome, endonuclease subunit [Burkholderia
           cenocepacia PC184]
 gi|123371877|sp|Q1BZ34|RUVC_BURCA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|166231585|sp|A0K4L6|RUVC_BURCH RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|238693124|sp|B4EES5|RUVC_BURCJ RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|105891956|gb|ABF75121.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
           cenocepacia AU 1054]
 gi|116646802|gb|ABK07443.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
           cenocepacia HI2424]
 gi|124871083|gb|EAY62799.1| Holliday junction resolvasome, endonuclease subunit [Burkholderia
           cenocepacia PC184]
 gi|198037717|emb|CAR53660.1| crossover junction endodeoxyribonuclease [Burkholderia cenocepacia
           J2315]
          Length = 180

 Score =  227 bits (579), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 68/156 (43%), Positives = 103/156 (66%), Gaps = 1/156 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGLR TG+G++DV+G  L +V+SG I +     LA RL  +++G++ +++   
Sbjct: 1   MRILGIDPGLRVTGFGVIDVSGHRLAYVTSGVIRTPT-ADLATRLGTIFQGVSTIVREHA 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P++AA+E+VFVN +  +TL LGQAR  AI       +PV+EY    +K+AV+G G   K 
Sbjct: 60  PDQAAIEKVFVNVNPQSTLLLGQARGAAICGLVAGGLPVAEYTALQLKQAVVGYGRATKT 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           Q+  M+  L+  S   G DAADAL +A+CHA+  N+
Sbjct: 120 QMQEMVTRLLNLSGQPGSDAADALGMAICHAHGGNT 155


>gi|161525863|ref|YP_001580875.1| Holliday junction resolvase [Burkholderia multivorans ATCC 17616]
 gi|189349416|ref|YP_001945044.1| Holliday junction resolvase [Burkholderia multivorans ATCC 17616]
 gi|221214499|ref|ZP_03587470.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
           multivorans CGD1]
 gi|226698747|sp|A9AH71|RUVC_BURM1 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|160343292|gb|ABX16378.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
           multivorans ATCC 17616]
 gi|189333438|dbj|BAG42508.1| crossover junction endodeoxyribonuclease [Burkholderia multivorans
           ATCC 17616]
 gi|221165756|gb|EED98231.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
           multivorans CGD1]
          Length = 180

 Score =  227 bits (579), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 68/156 (43%), Positives = 102/156 (65%), Gaps = 1/156 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGLR TG+G++DV+G  L +V+SG I +     LA RL  ++ G++ +++   
Sbjct: 1   MRILGIDPGLRVTGFGVIDVSGHQLAYVASGVIRTPT-ADLATRLGTIFAGVSTLVREHA 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P++AA+E+VFVN +  +TL LGQAR  AI       +PV+EY    +K+A++G G   K 
Sbjct: 60  PDQAAIEKVFVNVNPQSTLLLGQARGAAICGLVSGGLPVAEYTALQLKQAIVGYGRATKA 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           Q+  M+  L+  S   G DAADAL IA+CHA+  N+
Sbjct: 120 QMQEMVTRLLSLSGQPGSDAADALGIAICHAHGGNT 155


>gi|163802052|ref|ZP_02195948.1| Holliday junction resolvase [Vibrio sp. AND4]
 gi|159174193|gb|EDP59001.1| Holliday junction resolvase [Vibrio sp. AND4]
          Length = 173

 Score =  227 bits (579), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 66/154 (42%), Positives = 98/154 (63%), Gaps = 1/154 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G +L ++ SG I +  +  L  RL Q+Y G+T++I  ++P+
Sbjct: 4   ILGIDPGSRITGYGVIRQQGRHLQYLGSGCIRTSEK-ELPGRLKQIYAGVTEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR  AI++   A +PV EYA   IK+AV G G  DK Q+
Sbjct: 63  VFAIEQVFMAKNADSALKLGQARGSAIVAAVNADLPVYEYAARLIKQAVTGTGGADKVQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
             M++ ++        DAADAL +A+CHA    +
Sbjct: 123 QHMVQHMLKLPAKPQADAADALGVAICHANTNKT 156


>gi|187479250|ref|YP_787275.1| Holliday junction resolvase [Bordetella avium 197N]
 gi|123738521|sp|Q2KVY8|RUVC_BORA1 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|115423837|emb|CAJ50388.1| crossover junction endodeoxyribonuclease [Bordetella avium 197N]
          Length = 181

 Score =  227 bits (579), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 67/154 (43%), Positives = 99/154 (64%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGLRRTG+G+VD  G  L +++SGTIV     +LA RL  + + L +V +  R
Sbjct: 1   MRILGIDPGLRRTGFGVVDAEGSRLRYIASGTIVVPPDLALAQRLKVILDNLREVARETR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ AA+E VF+N +  +TL LG AR  A+ + A + + V EY    IKK+ +G G   K+
Sbjct: 61  PDVAALEIVFLNANPSSTLLLGHARGAALCALAESGLDVHEYTALQIKKSTVGTGRAAKE 120

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHA 158
           Q+ MM++ L+  +     D+ADALA A+CHA+  
Sbjct: 121 QVQMMVQHLLSLNGTPAPDSADALACAICHAHTG 154


>gi|261252499|ref|ZP_05945072.1| crossover junction endodeoxyribonuclease RuvC [Vibrio orientalis
           CIP 102891]
 gi|260935890|gb|EEX91879.1| crossover junction endodeoxyribonuclease RuvC [Vibrio orientalis
           CIP 102891]
          Length = 173

 Score =  227 bits (579), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 65/154 (42%), Positives = 100/154 (64%), Gaps = 1/154 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G +L ++ SG I +  +  L  RL Q+Y G++++I  ++P+
Sbjct: 4   ILGIDPGSRITGYGVIRQTGRHLQYLGSGCIRTSEK-ELPGRLKQIYAGVSEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ ++A + LKLGQAR  AI++   A +PVSEYA   IK+AV G G  DK+Q+
Sbjct: 63  VFAIEQVFMARNADSALKLGQARGSAIVAAVNADLPVSEYAARLIKQAVTGTGGADKEQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
             M++ ++        DAADAL +A+CHA    +
Sbjct: 123 QHMVQQMLKLPARPQADAADALGVAICHANTNKT 156


>gi|253997452|ref|YP_003049516.1| Holliday junction resolvase [Methylotenera mobilis JLW8]
 gi|253984131|gb|ACT48989.1| crossover junction endodeoxyribonuclease RuvC [Methylotenera
           mobilis JLW8]
          Length = 192

 Score =  227 bits (579), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 70/177 (39%), Positives = 107/177 (60%), Gaps = 12/177 (6%)

Query: 3   KSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVS-----------CVRQSLAFRLCQ 51
            +IRI+GIDPGLR TG+G+++  G+ + +VSSGTI +             R+ L  RL  
Sbjct: 6   SAIRILGIDPGLRLTGFGVIEKIGEKITYVSSGTIKTASAKKSKVEGDPEREELPARLKV 65

Query: 52  LYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTI 111
           + +GL +VI  ++P + A+E+VFVN +  +TL LGQAR  AI +  +  + V+EY    +
Sbjct: 66  ILDGLFEVIDTYQPHQVAIEKVFVNVNPQSTLLLGQARGAAISAAVIRNLSVAEYTALQV 125

Query: 112 KKAVIGVGHGDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
           K+AV+G GH  K+Q+  M+K L+        D+ADALA A+CHA+    G   +A+ 
Sbjct: 126 KQAVVGNGHAQKEQVQEMVKRLLKLPAAPKPDSADALACAICHAH-GGQGLGLMATA 181


>gi|260772518|ref|ZP_05881434.1| crossover junction endodeoxyribonuclease RuvC [Vibrio metschnikovii
           CIP 69.14]
 gi|260611657|gb|EEX36860.1| crossover junction endodeoxyribonuclease RuvC [Vibrio metschnikovii
           CIP 69.14]
          Length = 173

 Score =  227 bits (579), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 65/162 (40%), Positives = 97/162 (59%), Gaps = 1/162 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I +   Q    RL Q+Y G++++I  ++P+
Sbjct: 4   ILGIDPGSRITGYGVIRQQGRQLIYLGSGCIRT-SEQEFPLRLKQIYAGVSEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR  AI++   A +PV EYA   IK+AV+G G  DK Q+
Sbjct: 63  AFAIEQVFMAKNADSALKLGQARGSAIVAAVNADLPVYEYAARLIKQAVVGTGGADKTQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
             M++ ++        DAADAL +A+CHA    +        
Sbjct: 123 QHMVQQMLKLPAKPQADAADALGVAICHANTNKTLLALAGKA 164


>gi|258621407|ref|ZP_05716441.1| crossover junction endodeoxyribonuclease RuvC [Vibrio mimicus
           VM573]
 gi|258626835|ref|ZP_05721642.1| crossover junction endodeoxyribonuclease RuvC [Vibrio mimicus
           VM603]
 gi|262171189|ref|ZP_06038867.1| crossover junction endodeoxyribonuclease RuvC [Vibrio mimicus
           MB-451]
 gi|258580882|gb|EEW05824.1| crossover junction endodeoxyribonuclease RuvC [Vibrio mimicus
           VM603]
 gi|258586795|gb|EEW11510.1| crossover junction endodeoxyribonuclease RuvC [Vibrio mimicus
           VM573]
 gi|261892265|gb|EEY38251.1| crossover junction endodeoxyribonuclease RuvC [Vibrio mimicus
           MB-451]
          Length = 173

 Score =  227 bits (579), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 69/162 (42%), Positives = 103/162 (63%), Gaps = 2/162 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G +L ++ SG I +   Q L  RL Q+Y G++++I  ++P+
Sbjct: 4   ILGIDPGSRVTGYGVIRQQGRHLIYLGSGCIRT-SEQELPIRLKQIYAGVSEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR  AI++   A +PV EYA   IK+AV+G G  DK Q+
Sbjct: 63  AFAIEQVFMAKNADSALKLGQARGSAIVAAVNANLPVYEYAARLIKQAVVGTGAADKSQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
             M++ ++        DAADAL +A+CHA + N     +A Q
Sbjct: 123 QHMVQQMLKLPGKPQADAADALGVAICHA-NTNKTLIALAGQ 163


>gi|220928771|ref|YP_002505680.1| Holliday junction resolvase [Clostridium cellulolyticum H10]
 gi|254767467|sp|B8I1A2|RUVC_CLOCE RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|219999099|gb|ACL75700.1| crossover junction endodeoxyribonuclease RuvC [Clostridium
           cellulolyticum H10]
          Length = 166

 Score =  226 bits (578), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 53/158 (33%), Positives = 86/158 (54%), Gaps = 1/158 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + I+GIDPG   TG+G+V   G+    +    I +      + RL  LY  L  +I  +R
Sbjct: 1   MIIMGIDPGFAITGYGVVKYEGNKFSVLDYNAITTVASMKFSDRLLVLYNELEKLINKFR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  ++E++F NK+    L +G  R +A+L+ A + I + EY P  +K++V+G G  +K 
Sbjct: 61  PDAISIEELFFNKNIKTALTVGHGRGVAVLAAAKSGIDIFEYTPLQVKQSVVGYGRAEKA 120

Query: 125 QIHMMLKMLMPES-FFKGKDAADALAIAVCHAYHANSG 161
           Q+  M+K ++      K  D ADALA+A+CH      G
Sbjct: 121 QVQQMVKAILNLPAIPKPDDVADALAVAICHGNSHRMG 158


>gi|332968141|gb|EGK07224.1| crossover junction endoribonuclease subunit C [Kingella kingae ATCC
           23330]
          Length = 204

 Score =  226 bits (578), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 69/167 (41%), Positives = 99/167 (59%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M K+IRI+GIDPG R TG+GI+D  G    +V+SG I +  +  LA R+  +  G+ ++I
Sbjct: 27  MNKTIRILGIDPGSRSTGFGIIDWVGREPIYVASGCIQTIPKDELAGRVSIIVRGIAELI 86

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             +RP +AAVEQVFVN +  ATL LGQAR  AI +  L  +PV EY    +K++V+G G 
Sbjct: 87  DTYRPNQAAVEQVFVNVNPAATLMLGQARGAAIAALVLRDLPVYEYTALQVKQSVVGQGK 146

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
             K+Q+  M+  ++  S     DAAD LA+A+ H         K+  
Sbjct: 147 AAKEQVQHMVVKMLNLSGTPQADAADGLAVAITHGLRHQGLAGKLGG 193


>gi|313888451|ref|ZP_07822118.1| crossover junction endodeoxyribonuclease RuvC [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312845480|gb|EFR32874.1| crossover junction endodeoxyribonuclease RuvC [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 164

 Score =  226 bits (578), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 46/151 (30%), Positives = 89/151 (58%), Gaps = 1/151 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + I+GIDPG+   G+G +++ G++   +  G I +  +  L  RL  +YE + ++I+ ++
Sbjct: 1   MIILGIDPGIAIVGYGFLELKGNSYKVLDYGAITTEAKVPLPERLNTIYEEMNELIERYK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P++ A E++F NK+    + + QAR + +L+   +   + EY P  +K+A++G G   K 
Sbjct: 61  PDDIAFEELFFNKNVKTAITVAQARGVEVLAAKESGAGLYEYTPLQVKQAIVGYGRATKN 120

Query: 125 QIHMMLKMLMPESF-FKGKDAADALAIAVCH 154
           Q+  M+++++      K  D ADALA+A+ H
Sbjct: 121 QVQEMVRIILNLEKVPKPDDVADALAVAITH 151


>gi|15641849|ref|NP_231481.1| Holliday junction resolvase [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121591338|ref|ZP_01678626.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae
           2740-80]
 gi|121730274|ref|ZP_01682650.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae V52]
 gi|147673791|ref|YP_001217381.1| Holliday junction resolvase [Vibrio cholerae O395]
 gi|153824055|ref|ZP_01976722.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae B33]
 gi|227081976|ref|YP_002810527.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae
           M66-2]
 gi|229508056|ref|ZP_04397561.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae BX
           330286]
 gi|229511705|ref|ZP_04401184.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae B33]
 gi|229518844|ref|ZP_04408287.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae RC9]
 gi|229607617|ref|YP_002878265.1| Holliday junction resolvase [Vibrio cholerae MJ-1236]
 gi|254848933|ref|ZP_05238283.1| holliday junction resolvase [Vibrio cholerae MO10]
 gi|255745393|ref|ZP_05419342.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholera CIRS
           101]
 gi|298498114|ref|ZP_07007921.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae MAK
           757]
 gi|20978754|sp|Q9KR00|RUVC_VIBCH RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|172047660|sp|A5F762|RUVC_VIBC3 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|254767487|sp|C3LNF0|RUVC_VIBCM RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|9656375|gb|AAF94995.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|121546802|gb|EAX56968.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae
           2740-80]
 gi|121627976|gb|EAX60537.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae V52]
 gi|126518427|gb|EAZ75650.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae B33]
 gi|146315674|gb|ABQ20213.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae
           O395]
 gi|227009864|gb|ACP06076.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae
           M66-2]
 gi|227013745|gb|ACP09955.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae
           O395]
 gi|229343533|gb|EEO08508.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae RC9]
 gi|229351670|gb|EEO16611.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae B33]
 gi|229355561|gb|EEO20482.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae BX
           330286]
 gi|229370272|gb|ACQ60695.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae
           MJ-1236]
 gi|254844638|gb|EET23052.1| holliday junction resolvase [Vibrio cholerae MO10]
 gi|255737223|gb|EET92619.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholera CIRS
           101]
 gi|297542447|gb|EFH78497.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae MAK
           757]
          Length = 173

 Score =  226 bits (578), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 68/162 (41%), Positives = 102/162 (62%), Gaps = 2/162 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G +L ++ SG I +     L  RL Q+Y G++++I  ++P+
Sbjct: 4   ILGIDPGSRVTGYGVIRQQGRHLIYLGSGCIRT-SDLELPLRLKQIYAGVSEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR  AI++   A +PV EYA   IK+AV+G G  DK Q+
Sbjct: 63  AFAIEQVFMAKNADSALKLGQARGSAIVAAVNAELPVYEYAARLIKQAVVGTGAADKSQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
             M++ ++        DAADAL +A+CHA + N     +A Q
Sbjct: 123 QHMVQQMLKLPGKPQADAADALGVAICHA-NTNKTLIALAGQ 163


>gi|300813218|ref|ZP_07093586.1| crossover junction endodeoxyribonuclease RuvC [Peptoniphilus sp.
           oral taxon 836 str. F0141]
 gi|300512671|gb|EFK39803.1| crossover junction endodeoxyribonuclease RuvC [Peptoniphilus sp.
           oral taxon 836 str. F0141]
          Length = 164

 Score =  226 bits (578), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 55/151 (36%), Positives = 90/151 (59%), Gaps = 1/151 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGL   G+GI+D  G++   VS G I +  +  +  RL  +Y  ++++I  ++
Sbjct: 1   MRILGIDPGLAIIGYGILDFKGNSFKTVSYGQINTPAKTPITDRLDMIYSQMSELIIKFK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P++ A E++F NK+    + + QAR + +L+       V EY P  IKK+++G G   K+
Sbjct: 61  PDDIAFEELFFNKNVKTAITVAQARGVEVLAARQFTRNVYEYTPLQIKKSLVGYGRATKE 120

Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCH 154
           QI  M+K+L+      K  D ADALA+A+ H
Sbjct: 121 QIQYMVKVLLNLKEVPKPDDVADALAVAITH 151


>gi|220932070|ref|YP_002508978.1| crossover junction endodeoxyribonuclease RuvC [Halothermothrix
           orenii H 168]
 gi|254767476|sp|B8CXG4|RUVC_HALOH RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|219993380|gb|ACL69983.1| crossover junction endodeoxyribonuclease RuvC [Halothermothrix
           orenii H 168]
          Length = 165

 Score =  226 bits (578), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 50/151 (33%), Positives = 89/151 (58%), Gaps = 1/151 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + I+G+DPGL   G+ +++  G+    +  G+I +  +     RL  ++  + ++I  + 
Sbjct: 1   MVILGVDPGLAIVGYALIEKQGNKYRVIDYGSINTPSKLESVDRLKIIHTDMVNIINKYN 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P++ AVE++F NK+    +++GQAR + +L+ + AR+ + EY P  +K+AV G G   K 
Sbjct: 61  PDQMAVEKLFFNKNVKTAIEVGQARGVILLAGSQARLKIYEYTPLQVKQAVAGYGRAHKS 120

Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCH 154
           Q+  M+K L+      K  D ADALAI++CH
Sbjct: 121 QVQRMVKALLNLNEIPKPDDVADALAISICH 151


>gi|296132698|ref|YP_003639945.1| crossover junction endodeoxyribonuclease RuvC [Thermincola sp. JR]
 gi|296031276|gb|ADG82044.1| crossover junction endodeoxyribonuclease RuvC [Thermincola potens
           JR]
          Length = 166

 Score =  226 bits (578), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 57/153 (37%), Positives = 95/153 (62%), Gaps = 1/153 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + I+G+DPG   TG+G++ V G+ L  VS G I +     L  RL ++   ++ +I+ ++
Sbjct: 1   MLILGVDPGTAITGYGLIRVQGNKLDAVSYGCIRTDAGLPLHQRLQKINSEISRLIREFK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P   A+E++F NK+    L +GQAR +A+L+ A A + ++EY P  +K+AV+G G  DK 
Sbjct: 61  PTHFAIEELFFNKNTRTALSVGQARGVALLAAANAGLEIAEYTPLQVKQAVVGYGRADKN 120

Query: 125 QIHMMLKMLM-PESFFKGKDAADALAIAVCHAY 156
           Q+  M+K ++      K  D ADALA+A+CH++
Sbjct: 121 QVQYMVKTILCLPEIPKPDDTADALAVAICHSH 153


>gi|28897822|ref|NP_797427.1| Holliday junction resolvase [Vibrio parahaemolyticus RIMD 2210633]
 gi|153839739|ref|ZP_01992406.1| crossover junction endodeoxyribonuclease RuvC [Vibrio
           parahaemolyticus AQ3810]
 gi|260361819|ref|ZP_05774836.1| crossover junction endodeoxyribonuclease RuvC [Vibrio
           parahaemolyticus K5030]
 gi|260876982|ref|ZP_05889337.1| crossover junction endodeoxyribonuclease RuvC [Vibrio
           parahaemolyticus AN-5034]
 gi|260898719|ref|ZP_05907215.1| crossover junction endodeoxyribonuclease RuvC [Vibrio
           parahaemolyticus Peru-466]
 gi|260901354|ref|ZP_05909749.1| crossover junction endodeoxyribonuclease RuvC [Vibrio
           parahaemolyticus AQ4037]
 gi|31076903|sp|Q87QV1|RUVC_VIBPA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|28806035|dbj|BAC59311.1| crossover junction endodeoxyribonuclease RuvC [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|149746737|gb|EDM57725.1| crossover junction endodeoxyribonuclease RuvC [Vibrio
           parahaemolyticus AQ3810]
 gi|308089510|gb|EFO39205.1| crossover junction endodeoxyribonuclease RuvC [Vibrio
           parahaemolyticus Peru-466]
 gi|308093877|gb|EFO43572.1| crossover junction endodeoxyribonuclease RuvC [Vibrio
           parahaemolyticus AN-5034]
 gi|308109589|gb|EFO47129.1| crossover junction endodeoxyribonuclease RuvC [Vibrio
           parahaemolyticus AQ4037]
 gi|308113338|gb|EFO50878.1| crossover junction endodeoxyribonuclease RuvC [Vibrio
           parahaemolyticus K5030]
 gi|328473205|gb|EGF44053.1| Holliday junction resolvase [Vibrio parahaemolyticus 10329]
          Length = 173

 Score =  226 bits (578), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 66/154 (42%), Positives = 99/154 (64%), Gaps = 1/154 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G +L ++ SG I +  +  L  RL Q+Y G+T++I  ++P+
Sbjct: 4   ILGIDPGSRITGYGVIRQQGRHLQYLGSGCIRTSEK-ELPGRLKQIYAGVTEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR  AI++   A +PV EYA   IK+AV+G G  DK Q+
Sbjct: 63  VFAIEQVFMAKNADSALKLGQARGSAIVAAVNADLPVYEYAARLIKQAVVGTGGADKVQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
             M++ ++        DAADAL +A+CHA    +
Sbjct: 123 QHMVQHMLKLPAKPQADAADALGVAICHANTNKT 156


>gi|269967684|ref|ZP_06181734.1| crossover junction endodeoxyribonuclease RuvC [Vibrio alginolyticus
           40B]
 gi|269827771|gb|EEZ82055.1| crossover junction endodeoxyribonuclease RuvC [Vibrio alginolyticus
           40B]
          Length = 173

 Score =  226 bits (577), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 66/154 (42%), Positives = 99/154 (64%), Gaps = 1/154 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G +L ++ SG I +  +  L  RL Q+Y G+T++I  ++P+
Sbjct: 4   ILGIDPGSRITGYGVIRQNGRHLQYLGSGCIRTSEK-ELPGRLKQIYAGVTEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR  AI++   A +PV EYA   IK+AV+G G  DK Q+
Sbjct: 63  VFAIEQVFMAKNADSALKLGQARGSAIVAAVNAELPVFEYAARLIKQAVVGTGGADKAQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
             M++ ++        DAADAL +A+CHA    +
Sbjct: 123 QHMVQQMLKLPAKPQADAADALGVAICHANTNKT 156


>gi|262394695|ref|YP_003286549.1| crossover junction endodeoxyribonuclease RuvC [Vibrio sp. Ex25]
 gi|262338289|gb|ACY52084.1| crossover junction endodeoxyribonuclease RuvC [Vibrio sp. Ex25]
          Length = 173

 Score =  226 bits (577), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 66/154 (42%), Positives = 99/154 (64%), Gaps = 1/154 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G +L ++ SG I +  +  L  RL Q+Y G+T++I  ++P+
Sbjct: 4   ILGIDPGSRITGYGVIRQNGRHLQYLGSGCIRTSEK-ELPGRLKQIYAGVTEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR  AI++   A +PV EYA   IK+AV+G G  DK Q+
Sbjct: 63  VFAIEQVFMAKNADSALKLGQARGSAIVAAVNAELPVYEYAARLIKQAVVGTGGADKAQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
             M++ ++        DAADAL +A+CHA    +
Sbjct: 123 QHMVQQMLKLPAKPQADAADALGVAICHANTNKT 156


>gi|326201640|ref|ZP_08191511.1| crossover junction endodeoxyribonuclease RuvC [Clostridium
           papyrosolvens DSM 2782]
 gi|325988240|gb|EGD49065.1| crossover junction endodeoxyribonuclease RuvC [Clostridium
           papyrosolvens DSM 2782]
          Length = 166

 Score =  226 bits (577), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 53/158 (33%), Positives = 86/158 (54%), Gaps = 1/158 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + I+GIDPG   TG+G+V   G+    +    I +      + RL  LY  L  +I  ++
Sbjct: 1   MIIMGIDPGFAITGYGVVKYEGNKFSVLDYSAITTGASMKFSDRLLVLYNELEKLIDKYK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  ++E++F NK+    L +G  R +A+L+ A + I + EY P  +K++V+G G  +K 
Sbjct: 61  PDAISIEELFFNKNIKTALTVGHGRGVAVLAAAKSGIDIFEYTPLQVKQSVVGYGRAEKA 120

Query: 125 QIHMMLKMLMPES-FFKGKDAADALAIAVCHAYHANSG 161
           QI  M+K ++      K  D ADALA+A+CH      G
Sbjct: 121 QIQQMVKAILNLPAIPKPDDVADALAVAICHGNSHRMG 158


>gi|256027132|ref|ZP_05440966.1| crossover junction endodeoxyribonuclease ruvC [Fusobacterium sp.
           D11]
 gi|260497919|ref|ZP_05816037.1| crossover junction endodeoxyribonuclease RuvC [Fusobacterium sp.
           3_1_33]
 gi|289765113|ref|ZP_06524491.1| crossover junction endodeoxyribonuclease ruvC [Fusobacterium sp.
           D11]
 gi|260196534|gb|EEW94063.1| crossover junction endodeoxyribonuclease RuvC [Fusobacterium sp.
           3_1_33]
 gi|289716668|gb|EFD80680.1| crossover junction endodeoxyribonuclease ruvC [Fusobacterium sp.
           D11]
          Length = 190

 Score =  226 bits (577), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 52/157 (33%), Positives = 81/157 (51%), Gaps = 1/157 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R+IGIDPG    G+GI+D   +    V  G I++    S   RL  +Y  +  ++K ++
Sbjct: 1   MRVIGIDPGTAIVGYGIIDYDKNKYSVVDYGVILTSKDLSTEERLEVIYNNMDKILKKYK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           PE  A+E +F  K+    + + QAR + +L      IP+S Y P  +K  + G G  +KK
Sbjct: 61  PEFMAIEDLFYFKNNKTVISVAQARGVILLVGKQNNIPMSNYTPLQVKIGITGYGKAEKK 120

Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHANS 160
           Q+  M++  +      K  DAADALAI + H     S
Sbjct: 121 QVQQMVQKFLGLSEIPKPDDAADALAICITHINSLGS 157


>gi|153832503|ref|ZP_01985170.1| crossover junction endodeoxyribonuclease RuvC [Vibrio harveyi HY01]
 gi|156973888|ref|YP_001444795.1| Holliday junction resolvase [Vibrio harveyi ATCC BAA-1116]
 gi|269963128|ref|ZP_06177463.1| crossover junction endodeoxyribonuclease RuvC [Vibrio harveyi 1DA3]
 gi|166233310|sp|A7N1J2|RUVC_VIBHB RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|148871298|gb|EDL70170.1| crossover junction endodeoxyribonuclease RuvC [Vibrio harveyi HY01]
 gi|156525482|gb|ABU70568.1| hypothetical protein VIBHAR_01598 [Vibrio harveyi ATCC BAA-1116]
 gi|269832092|gb|EEZ86216.1| crossover junction endodeoxyribonuclease RuvC [Vibrio harveyi 1DA3]
          Length = 173

 Score =  226 bits (577), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 66/154 (42%), Positives = 98/154 (63%), Gaps = 1/154 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G +L ++ SG I +  +  L  RL Q+Y G+T++I  ++P+
Sbjct: 4   ILGIDPGSRITGYGVIRQQGRHLQYLGSGCIRTSEK-ELPGRLKQIYAGVTEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR  AI++   A +PV EYA   IK+AV G G  DK Q+
Sbjct: 63  VFAIEQVFMAKNADSALKLGQARGSAIVAAVNADLPVHEYAARLIKQAVTGTGGADKVQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
             M++ ++        DAADAL +A+CHA    +
Sbjct: 123 QHMVQHMLKLPAKPQADAADALGVAICHANTNKT 156


>gi|78065252|ref|YP_368021.1| Holliday junction resolvase [Burkholderia sp. 383]
 gi|90146438|sp|Q39JI9|RUVC_BURS3 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|77965997|gb|ABB07377.1| Crossover junction endodeoxyribonuclease RuvC [Burkholderia sp.
           383]
          Length = 180

 Score =  226 bits (577), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 68/156 (43%), Positives = 103/156 (66%), Gaps = 1/156 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGLR TG+GI+DV+G  L +V+SG I +     LA RL  +++G++ +++   
Sbjct: 1   MRILGIDPGLRVTGFGIIDVSGHRLAYVASGVIRTPT-ADLATRLGTIFQGVSTIVREHA 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+++A+E+VFVN +  +TL LGQAR  AI       +PV+EY    +K+AV+G G   K 
Sbjct: 60  PDQSAIEKVFVNVNPQSTLLLGQARGAAICGLVAGGLPVAEYTALQLKQAVVGYGRATKT 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           Q+  M+  L+  S   G DAADAL +A+CHA+  N+
Sbjct: 120 QMQEMVTRLLNLSGQPGSDAADALGMAICHAHGGNT 155


>gi|330828880|ref|YP_004391832.1| Crossover junction endodeoxyribonuclease ruvC [Aeromonas veronii
           B565]
 gi|328804016|gb|AEB49215.1| Crossover junction endodeoxyribonuclease ruvC [Aeromonas veronii
           B565]
          Length = 169

 Score =  225 bits (576), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 66/161 (40%), Positives = 101/161 (62%), Gaps = 2/161 (1%)

Query: 8   IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEE 67
           +GIDPG R TG+G++ V G    ++ SG I +     L  RL Q+Y+G+ ++I  ++P E
Sbjct: 1   MGIDPGSRITGYGVIRVVGGKAEYLGSGCIRTDCG-ELPERLKQVYDGVCEIITQFKPTE 59

Query: 68  AAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIH 127
            A+E+VF+ ++A + LKLGQAR  AI++   A +PVSEY+   IK+AV+G G   K+Q+ 
Sbjct: 60  FAIERVFMARNADSALKLGQARGSAIVAAVNAYLPVSEYSATQIKQAVVGTGGAAKEQVQ 119

Query: 128 MMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
            M+  L+  S     DAADAL +A+CH +   S   K+A +
Sbjct: 120 HMVTHLLKLSATPQADAADALGVALCHLHTRQS-LIKMAGR 159


>gi|257440217|ref|ZP_05615972.1| crossover junction endodeoxyribonuclease RuvC [Faecalibacterium
           prausnitzii A2-165]
 gi|257197251|gb|EEU95535.1| crossover junction endodeoxyribonuclease RuvC [Faecalibacterium
           prausnitzii A2-165]
          Length = 170

 Score =  225 bits (576), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 54/165 (32%), Positives = 91/165 (55%), Gaps = 1/165 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPG    GWG++D AG+    V  G + +        RL ++Y G+ +VI+  +
Sbjct: 1   MRVLGIDPGYAIVGWGVLDYAGNRFAPVDFGAVCTDAGVPFEQRLDEVYTGIREVIERTQ 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           PE  A+E++F   +    + + +AR + +L+ A A IP+ EY P  +K+AV G G   KK
Sbjct: 61  PEVLAIEKLFYQHNQTTVIGVAEARGVILLAAAQAGIPIYEYTPMQVKQAVTGYGKAVKK 120

Query: 125 QIHMMLKMLMPESF-FKGKDAADALAIAVCHAYHANSGYYKIASQ 168
           Q+  M ++L+      K  D ADALA+A+   +   +   + A +
Sbjct: 121 QVQEMTRILLHLPAVPKPDDTADALAMAITFCHTNGNQLNRFARR 165


>gi|225025770|ref|ZP_03714962.1| hypothetical protein EIKCOROL_02674 [Eikenella corrodens ATCC
           23834]
 gi|224941467|gb|EEG22676.1| hypothetical protein EIKCOROL_02674 [Eikenella corrodens ATCC
           23834]
          Length = 178

 Score =  225 bits (576), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 69/165 (41%), Positives = 103/165 (62%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M+K IRI+GIDPG R TG+G++DV G +  +V+SG I +     LA R+  + + + ++I
Sbjct: 1   MQKPIRILGIDPGSRVTGFGVIDVLGQSQRYVASGCIKTIPGDELAGRIGIIVQHIGEII 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             ++P +AAVEQVFVN +  ATL LGQAR  A+ +  L  +PV EY    +K+AV+G G 
Sbjct: 61  DTYQPNQAAVEQVFVNVNPAATLMLGQARGAAVAALVLRGLPVYEYTALQVKQAVVGQGK 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
             K+Q+  M+  ++  S     DAAD LA+A+ HA   +S   K+
Sbjct: 121 AAKEQVQHMVVQMLKLSGKPQADAADGLAVALTHALRNHSLAAKL 165


>gi|307730946|ref|YP_003908170.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia sp.
           CCGE1003]
 gi|307585481|gb|ADN58879.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia sp.
           CCGE1003]
          Length = 180

 Score =  225 bits (576), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 66/152 (43%), Positives = 100/152 (65%), Gaps = 1/152 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGLR TG+G++D +G  L +V+SG I +     L  RL  +++G++ +I+   
Sbjct: 1   MRILGIDPGLRVTGFGVIDQSGHTLSYVASGVIKT-ADADLPSRLGTIFDGISTLIRQHS 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P++AA+E+VFVN +  +TL LGQAR  AI       +PV+EY    +K+AV+G G   K+
Sbjct: 60  PDQAAIEKVFVNVNPQSTLLLGQARGAAICGLVAGGVPVAEYTALQLKQAVVGYGRATKE 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
           Q+  M+  L+  S   G DAADAL +A+CHA+
Sbjct: 120 QMQQMVVRLLSLSGVPGTDAADALGMAICHAH 151


>gi|145298296|ref|YP_001141137.1| Holliday junction resolvase [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|166231576|sp|A4SKG7|RUVC_AERS4 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|142851068|gb|ABO89389.1| crossover junction endodeoxyribonuclease RuvC [Aeromonas
           salmonicida subsp. salmonicida A449]
          Length = 173

 Score =  225 bits (576), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 65/162 (40%), Positives = 103/162 (63%), Gaps = 2/162 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++ +      ++ SG I +     L  RL Q+Y+G++++I  ++P+
Sbjct: 4   ILGIDPGSRITGYGVIRIVAGKAEYLGSGCIRTDFG-ELPSRLKQVYDGVSEIITQFKPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E+VF+ ++A + LKLGQAR  AI++   A +PVSEY+   IK+AV+G G   K+Q+
Sbjct: 63  EFAIERVFMARNADSALKLGQARGSAIVAAVNALLPVSEYSATQIKQAVVGTGGAAKEQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
             M+  L+  S     DAADAL +A+CH +   S   K+A +
Sbjct: 123 QHMVTHLLKLSATPQADAADALGVAICHFHTRQS-LIKMAGR 163


>gi|325290233|ref|YP_004266414.1| Crossover junction endodeoxyribonuclease ruvC [Syntrophobotulus
           glycolicus DSM 8271]
 gi|324965634|gb|ADY56413.1| Crossover junction endodeoxyribonuclease ruvC [Syntrophobotulus
           glycolicus DSM 8271]
          Length = 156

 Score =  225 bits (576), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 53/154 (34%), Positives = 84/154 (54%), Gaps = 1/154 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + I+GIDPG   TG+G+++  G  +  V      +     +  RL  L E L +V+  + 
Sbjct: 1   MLILGIDPGTATTGYGLIEKTGQKITPVEYSCWRTPAGLPMPQRLLMLSEFLEEVLGKYS 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P    VE++F N++    + +GQAR + +L+ A  +IP  EY P  +K+AV G G   K+
Sbjct: 61  PSHLVVEELFFNRNVTTVISVGQARGVILLAAAKYKIPAYEYTPLQVKQAVAGYGKATKQ 120

Query: 125 QIHMMLKMLMPESF-FKGKDAADALAIAVCHAYH 157
           Q+  M+K ++      K  D ADALAI +CHA+ 
Sbjct: 121 QVQYMVKAILGLKECPKPDDTADALAIGICHAFT 154


>gi|23015562|ref|ZP_00055334.1| COG0817: Holliday junction resolvasome, endonuclease subunit
           [Magnetospirillum magnetotacticum MS-1]
          Length = 166

 Score =  225 bits (576), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 74/156 (47%), Positives = 105/156 (67%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+G+DPGLR TGWGI+D   + L  V+ G I      +L+ RL QL++ +  VI  + 
Sbjct: 1   MRILGLDPGLRNTGWGIIDAVDNRLRHVADGVIRPDASAALSERLVQLHDAIMAVIAEYG 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+EAAVE+ FVN +  +TLKLGQAR + +L PA A +PV EYA   +K++V+G G   K+
Sbjct: 61  PDEAAVEETFVNMNPASTLKLGQARGVVMLVPAKAGLPVGEYAATLVKQSVVGTGRAAKE 120

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           Q+ MM+K L+P       DAADALA+A+CHA+H  +
Sbjct: 121 QVGMMVKTLLPGCLAATPDAADALAVAICHAHHRGT 156


>gi|254253223|ref|ZP_04946541.1| Holliday junction resolvasome endonuclease subunit [Burkholderia
           dolosa AUO158]
 gi|124895832|gb|EAY69712.1| Holliday junction resolvasome endonuclease subunit [Burkholderia
           dolosa AUO158]
          Length = 180

 Score =  225 bits (575), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 68/156 (43%), Positives = 102/156 (65%), Gaps = 1/156 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGLR TG+G++DV+G  L +V+SG I +     LA RL  ++ G++ +++   
Sbjct: 1   MRILGIDPGLRVTGFGVIDVSGHRLAYVTSGVIRTPT-ADLATRLGTIFHGVSTLVREHA 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P++AA+E+VFVN +  +TL LGQAR  AI       +PV+EY    +K+AV+G G   K 
Sbjct: 60  PDQAAIEKVFVNVNPQSTLLLGQARGAAICGLVAGGLPVAEYTALQLKQAVVGYGRATKT 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           Q+  M+  L+  S   G DAADAL +A+CHA+  N+
Sbjct: 120 QMQEMVTRLLNLSGQPGTDAADALGMAICHAHGGNT 155


>gi|325267304|ref|ZP_08133966.1| crossover junction endoribonuclease subunit C [Kingella
           denitrificans ATCC 33394]
 gi|324981241|gb|EGC16891.1| crossover junction endoribonuclease subunit C [Kingella
           denitrificans ATCC 33394]
          Length = 176

 Score =  225 bits (575), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 67/167 (40%), Positives = 99/167 (59%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M K IRI+GIDPG R TG+G++D  G    +V+SG I +     LA R+  +  G+ D++
Sbjct: 1   MSKPIRILGIDPGSRITGFGVIDWHGREPVYVASGCIKTLPNDELAGRIGMIVRGIGDLV 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             +RP +AAVEQVFVN +  ATL LGQAR  A+ +  L  +PV EY    +K++V+G G 
Sbjct: 61  AEYRPNQAAVEQVFVNVNPAATLMLGQARGAAVAALVLRDLPVYEYTALQVKQSVVGQGK 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
             K+Q+  M+  ++  S     DAAD LA+A+ HA  +     ++  
Sbjct: 121 AAKEQVQHMVVQMLGLSGTPQADAADGLAVAITHALRSQGLARQLGG 167


>gi|313895597|ref|ZP_07829153.1| crossover junction endodeoxyribonuclease RuvC [Selenomonas sp. oral
           taxon 137 str. F0430]
 gi|312975723|gb|EFR41182.1| crossover junction endodeoxyribonuclease RuvC [Selenomonas sp. oral
           taxon 137 str. F0430]
          Length = 164

 Score =  225 bits (574), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 55/161 (34%), Positives = 89/161 (55%), Gaps = 1/161 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + ++GIDPG    G+G V+  G  L   + G I +  +     RL ++Y  L ++I+  R
Sbjct: 1   MLVLGIDPGTAICGYGFVEQIGSRLVPHAYGAITTPSKMQPERRLLKIYTELENLIQEHR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P    +EQ+F N++    + +GQAR IA+L+ A   IP+ E+ P  +K+AV G G   K+
Sbjct: 61  PSAIGIEQLFFNRNVTTAIPVGQARGIALLAAAKNDIPIVEHTPLQVKQAVTGYGKATKE 120

Query: 125 QIHMMLKMLMPESFFK-GKDAADALAIAVCHAYHANSGYYK 164
           Q+  M+  L+         D ADALA+A+C AY  +S  ++
Sbjct: 121 QVIYMVTKLLHLPEPPYPDDTADALAVAICTAYCVDSIAWR 161


>gi|323527309|ref|YP_004229462.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia sp.
           CCGE1001]
 gi|323384311|gb|ADX56402.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia sp.
           CCGE1001]
          Length = 180

 Score =  225 bits (574), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 64/156 (41%), Positives = 100/156 (64%), Gaps = 1/156 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGLR TG+G++D +G  L +V+SG I +     L  RL  +++G++ +I+   
Sbjct: 1   MRILGIDPGLRVTGFGVIDQSGHTLSYVASGVIKT-ADADLPSRLGTIFDGISTLIRQHA 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+++A+E+VFVN +  +TL LGQAR  AI       +PV+EY    +K+AV+G G   K+
Sbjct: 60  PDQSAIEKVFVNVNPQSTLLLGQARGAAICGLVAGGVPVAEYTALQLKQAVVGYGRATKE 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           Q+  M+  L+  S     DAADAL +A+CHA+   +
Sbjct: 120 QMQQMVVRLLSLSGVPSTDAADALGMAICHAHGGTT 155


>gi|170732010|ref|YP_001763957.1| Holliday junction resolvase [Burkholderia cenocepacia MC0-3]
 gi|238688562|sp|B1JVV5|RUVC_BURCC RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|169815252|gb|ACA89835.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
           cenocepacia MC0-3]
          Length = 180

 Score =  225 bits (574), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 68/156 (43%), Positives = 104/156 (66%), Gaps = 1/156 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGLR TG+G++DV+G  L +V+SG I +     LA RL  +++G++ ++++  
Sbjct: 1   MRILGIDPGLRVTGFGVIDVSGHRLAYVTSGVIRTPT-ADLATRLGTIFQGVSTIVRDHA 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P++AA+E+VFVN +  +TL LGQAR  AI       +PV+EY    +K+AV+G G   K 
Sbjct: 60  PDQAAIEKVFVNVNPQSTLLLGQARGAAICGLVAGGLPVAEYTALQLKQAVVGYGRATKT 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           Q+  M+  L+  S   G DAADAL +A+CHA+  N+
Sbjct: 120 QMQDMVTRLLNLSGQPGSDAADALGMAICHAHGGNT 155


>gi|237743571|ref|ZP_04574052.1| crossover junction endodeoxyribonuclease ruvC [Fusobacterium sp.
           7_1]
 gi|229433350|gb|EEO43562.1| crossover junction endodeoxyribonuclease ruvC [Fusobacterium sp.
           7_1]
          Length = 190

 Score =  225 bits (574), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 51/157 (32%), Positives = 81/157 (51%), Gaps = 1/157 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R+IGIDPG    G+GI+D   +    V  G I++    S   RL  +Y  +  ++K ++
Sbjct: 1   MRVIGIDPGTAIVGYGIIDYDKNKYSVVDYGVILTSKDLSTEERLEVIYNNMNKILKKYK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           PE  A+E +F  K+    + + QAR + +L      IP+S Y P  +K  + G G  +KK
Sbjct: 61  PEFMAIEDLFYFKNNKTVISVAQARGVILLVGKQNNIPMSNYTPLQVKIGITGYGKAEKK 120

Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHANS 160
           Q+  M++  +      +  DAADALAI + H     S
Sbjct: 121 QVQQMVQKFLGLSEIPRPDDAADALAICITHINSLGS 157


>gi|329916097|ref|ZP_08276356.1| Crossover junction endodeoxyribonuclease RuvC [Oxalobacteraceae
           bacterium IMCC9480]
 gi|327544766|gb|EGF30172.1| Crossover junction endodeoxyribonuclease RuvC [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 180

 Score =  224 bits (573), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 64/154 (41%), Positives = 102/154 (66%), Gaps = 1/154 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGLR TG+G+++  G  L +++SGTI +     L  RL  +  G+++V+  +R
Sbjct: 1   MRILGIDPGLRITGFGVIEKHGHKLSYIASGTIKTL-DIDLPARLKTILAGVSEVVATYR 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ +A+E+VFVN +  +TL LGQAR  AI +   A + V+EY    +K+AV+G G   K+
Sbjct: 60  PDCSAIEKVFVNVNPQSTLLLGQARGAAICALVSADLLVAEYTALQVKQAVVGQGKAQKE 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHA 158
           Q+  M++ L+  S     DAADAL +A+CHA+++
Sbjct: 120 QVQDMVQRLLMLSGKPTADAADALGVAICHAHNS 153


>gi|167623850|ref|YP_001674144.1| Holliday junction resolvase [Shewanella halifaxensis HAW-EB4]
 gi|189046080|sp|B0TSA5|RUVC_SHEHH RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|167353872|gb|ABZ76485.1| crossover junction endodeoxyribonuclease RuvC [Shewanella
           halifaxensis HAW-EB4]
          Length = 173

 Score =  224 bits (573), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 64/154 (41%), Positives = 99/154 (64%), Gaps = 1/154 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+G+DPG R TG+G+++  G    +V SG I +     L  RL Q+++GL+++I+ ++P+
Sbjct: 4   ILGVDPGSRITGYGVINCVGRQQIYVGSGCIRTSSD-ELPIRLKQIFDGLSEIIRQYQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E+VF+ K+A + LKLGQAR  AI++   A +PV+EY+   IK AV+G G   K Q+
Sbjct: 63  EFAIERVFMAKNADSALKLGQARGAAIVAATAANLPVAEYSATQIKSAVVGTGRAQKAQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
             M++ L+        DAADAL +AVCH +   S
Sbjct: 123 QHMIQQLLKLPSAPQADAADALGVAVCHYHTCQS 156


>gi|149191829|ref|ZP_01870066.1| Holliday junction resolvase [Vibrio shilonii AK1]
 gi|148834347|gb|EDL51347.1| Holliday junction resolvase [Vibrio shilonii AK1]
          Length = 173

 Score =  224 bits (573), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 64/154 (41%), Positives = 96/154 (62%), Gaps = 1/154 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G +L ++ SG I +     L  RL Q+Y G++++I  ++P+
Sbjct: 4   ILGIDPGSRITGYGVIRQQGRHLQYLGSGCIRT-SEAELPGRLKQIYAGVSEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR  AI++     +PV EYA   IK+AV+G G  DK Q+
Sbjct: 63  VFAIEQVFMAKNADSALKLGQARGSAIVAAVNNDLPVYEYAARLIKQAVVGTGGADKAQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
             M+  ++        DAADAL +A+CHA    +
Sbjct: 123 QHMVMAMLKLPSKPQADAADALGVAICHANTNKT 156


>gi|312882584|ref|ZP_07742324.1| Holliday junction resolvase [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309369744|gb|EFP97256.1| Holliday junction resolvase [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 173

 Score =  224 bits (573), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 64/154 (41%), Positives = 97/154 (62%), Gaps = 1/154 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G +L ++ SG I +   Q L  RL Q+Y G++++I  ++PE
Sbjct: 4   ILGIDPGSRITGYGVIRQNGRHLQYLGSGCIRT-SEQDLPGRLKQIYAGVSEIITQFQPE 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ ++A + LKLGQAR  AI++     + V EYA   IK+AV+G G  DK Q+
Sbjct: 63  VFAIEQVFMARNADSALKLGQARGSAIVAAVNNDLEVFEYAARLIKQAVVGTGAADKAQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
             M++ ++        DAADAL +A+CHA    +
Sbjct: 123 QHMVQQMLKLPAKPQADAADALGVAICHANTNKT 156


>gi|261364067|ref|ZP_05976950.1| crossover junction endodeoxyribonuclease RuvC [Neisseria mucosa
           ATCC 25996]
 gi|288568109|gb|EFC89669.1| crossover junction endodeoxyribonuclease RuvC [Neisseria mucosa
           ATCC 25996]
          Length = 182

 Score =  224 bits (572), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 61/164 (37%), Positives = 101/164 (61%)

Query: 2   RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
            ++ RI+GIDPG R TG+G++DV G    +++SG I +     L+ R+  +   + ++++
Sbjct: 5   SQTTRILGIDPGSRVTGFGVIDVRGREHFYIASGCIKTPPDAPLSERIAVIVRHIDEIVR 64

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
            +RP++AAVEQVFVN +  +TL LGQAR  A+ +  +  +PVSEY    +K+AV+G G  
Sbjct: 65  TYRPQQAAVEQVFVNVNPASTLMLGQARGAALAALVMHGLPVSEYTALQVKQAVVGKGKA 124

Query: 122 DKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
            K+Q+  M+  ++  S     DAAD LA+A+ HA   +    ++
Sbjct: 125 AKEQVQHMVVQMLSLSGTPQSDAADGLAVALTHALRNHGLAAQL 168


>gi|312127830|ref|YP_003992704.1| crossover junction endodeoxyribonuclease ruvc [Caldicellulosiruptor
           hydrothermalis 108]
 gi|312622646|ref|YP_004024259.1| crossover junction endodeoxyribonuclease ruvc [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|311777849|gb|ADQ07335.1| crossover junction endodeoxyribonuclease RuvC [Caldicellulosiruptor
           hydrothermalis 108]
 gi|312203113|gb|ADQ46440.1| crossover junction endodeoxyribonuclease RuvC [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 164

 Score =  224 bits (572), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 53/159 (33%), Positives = 89/159 (55%), Gaps = 2/159 (1%)

Query: 8   IGIDPGLRRTGWGIVD-VAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           +GIDPG+  TG+GI++   G     +  G I +      + RL  LY  L  +I  ++P+
Sbjct: 2   LGIDPGIALTGYGIIESKNGSEFKVIDYGRIETSSSLKKSMRLLHLYTELCSIISLYQPD 61

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+E++F +K++   + +G+AR + IL+     + + EY P  +K+++ G G  DK QI
Sbjct: 62  VVAIEELFFSKNSKTAITIGEARGVIILTCIQNNLSIYEYTPLQVKQSITGYGRADKTQI 121

Query: 127 HMMLKMLMPE-SFFKGKDAADALAIAVCHAYHANSGYYK 164
             M+K L+      K  D ADALA+A+CH   ++S  Y+
Sbjct: 122 QKMVKSLLGLSEIPKPDDVADALAVAMCHILSSSSVLYQ 160


>gi|237654508|ref|YP_002890822.1| Holliday junction resolvase [Thauera sp. MZ1T]
 gi|237625755|gb|ACR02445.1| crossover junction endodeoxyribonuclease RuvC [Thauera sp. MZ1T]
          Length = 183

 Score =  224 bits (572), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 65/153 (42%), Positives = 96/153 (62%), Gaps = 1/153 (0%)

Query: 4   SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           + RI+G+DPGLR TG+G+VD  G  L +V+SG I +     L  RL  L +G+ +++  +
Sbjct: 10  ATRILGLDPGLRITGFGLVDQLGTQLRYVASGCIRTR-DGELPARLKTLLDGVREIVDTY 68

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RP+  AVE+VFVN +  +TL LGQAR   I       +PV+EY    +K++V+G G   K
Sbjct: 69  RPDVVAVEKVFVNVNPQSTLLLGQARGAVICGAVACDLPVAEYTALQVKQSVVGYGKAHK 128

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
           +Q+  M++ L+      G DAADALA A+CHA+
Sbjct: 129 EQVQHMVQRLLALDASPGPDAADALACAICHAH 161


>gi|186477302|ref|YP_001858772.1| Holliday junction resolvase [Burkholderia phymatum STM815]
 gi|238691293|sp|B2JGU2|RUVC_BURP8 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|184193761|gb|ACC71726.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
           phymatum STM815]
          Length = 180

 Score =  224 bits (572), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 65/152 (42%), Positives = 98/152 (64%), Gaps = 1/152 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGLR TG+G++D +G  L +V+SG I +     L  RL  ++EG++ +I+   
Sbjct: 1   MRILGIDPGLRVTGFGVIDQSGHQLTYVTSGVIKT-ADADLPTRLGTIFEGISTLIRQHA 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ +A+E+VFVN +  +TL LGQAR  AI       +PV+EY    +K+AV+G G   K+
Sbjct: 60  PDHSAIEKVFVNVNPQSTLLLGQARGAAICGLVSGGVPVAEYTALQLKQAVVGYGRATKE 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
           Q+  M+  L+  S     DAADAL +A+CHA+
Sbjct: 120 QMQQMVVRLLCLSGIPSTDAADALGMAICHAH 151


>gi|147919263|ref|YP_687001.1| holliday junction resolvasome, endonuclease subunit [uncultured
           methanogenic archaeon RC-I]
 gi|110622397|emb|CAJ37675.1| holliday junction resolvasome, endonuclease subunit [uncultured
           methanogenic archaeon RC-I]
          Length = 172

 Score =  224 bits (572), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 56/155 (36%), Positives = 89/155 (57%), Gaps = 1/155 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPG    G+GIV+   + L     G I +     +  RL  LY+ ++ VI  ++
Sbjct: 1   MRILGIDPGFALVGFGIVEAGKNGLKAGKYGHISTESGLPVPDRLKILYDDMSTVIAEYK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  AVE++F NK+    +    AR + +L+   A + V+EY P  +K+AV+G G   K+
Sbjct: 61  PDVVAVEELFFNKNVKTAIVASHARGVLVLAAVNAGLEVAEYTPLQVKQAVVGYGRATKQ 120

Query: 125 QIHMMLKMLM-PESFFKGKDAADALAIAVCHAYHA 158
           Q+ +M+  L+  +   K  D ADALA+A+CHA  A
Sbjct: 121 QVQLMVTRLLALKEVPKPDDTADALAVAICHANSA 155


>gi|294788095|ref|ZP_06753339.1| crossover junction endodeoxyribonuclease RuvC [Simonsiella muelleri
           ATCC 29453]
 gi|294484388|gb|EFG32071.1| crossover junction endodeoxyribonuclease RuvC [Simonsiella muelleri
           ATCC 29453]
          Length = 179

 Score =  224 bits (572), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 65/167 (38%), Positives = 100/167 (59%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M + +R++GIDPG R TG+GI+D+ G    +V+SG I +     LA R+  + + + ++I
Sbjct: 3   MSRPVRVLGIDPGSRTTGFGIIDLVGREYQYVASGCIRTIPNDELAGRIGVIVQHIDEII 62

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
           + +RP +AA+EQVFVN +  ATL LGQAR  AI +  L  +PV EY    +K+AV+G G 
Sbjct: 63  ETYRPNQAAIEQVFVNVNPKATLMLGQARGAAIAALVLRGLPVHEYTALQVKQAVVGQGK 122

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
             K+Q+  M+  ++  S     DAAD LA+A+ HA        ++  
Sbjct: 123 AAKEQVQHMVVNMLKLSGTPQADAADGLAVALTHALRGYGLAGRLGG 169


>gi|320352802|ref|YP_004194141.1| crossover junction endodeoxyribonuclease RuvC [Desulfobulbus
           propionicus DSM 2032]
 gi|320121304|gb|ADW16850.1| crossover junction endodeoxyribonuclease RuvC [Desulfobulbus
           propionicus DSM 2032]
          Length = 162

 Score =  224 bits (572), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 62/154 (40%), Positives = 96/154 (62%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPG R TG+G++   G  + FV+ GTI +      + RL  ++E L +VI   +
Sbjct: 1   MRILGIDPGSRVTGYGVIAARGHEIGFVACGTIRTGEESDFSRRLLTIFEDLCEVISLHQ 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P  AAVE +FV+++  + LKLG AR  A+++    ++ V +Y    +K+AV G G  +K 
Sbjct: 61  PSVAAVEDMFVDRNPRSALKLGHARGAAVVAALHNKLTVFDYPARKVKQAVAGYGQAEKG 120

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHA 158
           Q+  M++ L+       KDAADALA+A+CHA+HA
Sbjct: 121 QVQHMVRTLLQLDATPSKDAADALAVAICHAHHA 154


>gi|307244296|ref|ZP_07526411.1| crossover junction endodeoxyribonuclease RuvC [Peptostreptococcus
           stomatis DSM 17678]
 gi|306492446|gb|EFM64484.1| crossover junction endodeoxyribonuclease RuvC [Peptostreptococcus
           stomatis DSM 17678]
          Length = 165

 Score =  224 bits (572), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 51/158 (32%), Positives = 82/158 (51%), Gaps = 1/158 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + I+GIDPGL   G+G+V+   +    +  G I +    S   RL ++Y+G+  +   + 
Sbjct: 1   MIILGIDPGLAIIGYGLVEYKNNRFRTIDYGAITTPAGMSTVERLERIYKGMNQLFHMYD 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
            +E  +E++F NK+    + + QAR + +LS      P  EY P  +K+ V G G  DK 
Sbjct: 61  IDEVGIEELFFNKNVKTAITVAQARGVILLSCQHHAKPTYEYTPLQVKQGVCGYGRADKP 120

Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHANSG 161
           Q+  M+   +      K  D ADALA+A+CHA+    G
Sbjct: 121 QVQKMVTSFLNLKEVPKPDDVADALAVAICHAHSNRLG 158


>gi|304317017|ref|YP_003852162.1| crossover junction endodeoxyribonuclease RuvC
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302778519|gb|ADL69078.1| crossover junction endodeoxyribonuclease RuvC
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 165

 Score =  224 bits (572), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 57/154 (37%), Positives = 92/154 (59%), Gaps = 1/154 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RIIGIDPG+   G+GI+D        +  G I + V    + RL ++Y+G   +I+ +R
Sbjct: 1   MRIIGIDPGIAIMGYGIIDDDCGKFKVLEYGAITTRVGIKKSIRLKEIYDGTILLIEKYR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  A+E++F NK+A   + +G++R +AIL+     I V EY P  +K++V+G G  +KK
Sbjct: 61  PDVMAIEELFFNKNAKTVITIGESRGVAILAAVNCGIDVFEYTPLQVKQSVVGYGRAEKK 120

Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYH 157
           Q+  M+K ++      K  D ADALA+A+CH   
Sbjct: 121 QVQNMVKAILGLNEIPKPDDVADALAVALCHCNS 154


>gi|320528951|ref|ZP_08030043.1| crossover junction endodeoxyribonuclease RuvC [Selenomonas
           artemidis F0399]
 gi|320138581|gb|EFW30471.1| crossover junction endodeoxyribonuclease RuvC [Selenomonas
           artemidis F0399]
          Length = 164

 Score =  224 bits (571), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 55/161 (34%), Positives = 89/161 (55%), Gaps = 1/161 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + ++GIDPG    G+G V+  G  L   + G I +  +     RL ++Y  L ++I+  R
Sbjct: 1   MLVLGIDPGTAICGYGFVEQIGSRLVPHAYGAITTPSKMQPERRLLKIYTELENLIQEHR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P    +EQ+F N++    + +GQAR IA+L+ A   IP+ E+ P  +K+AV G G   K+
Sbjct: 61  PSAIGIEQLFFNRNVTTAIPVGQARGIALLAAAKNDIPIVEHTPLQVKQAVTGYGKATKE 120

Query: 125 QIHMMLKMLMPESFFK-GKDAADALAIAVCHAYHANSGYYK 164
           Q+  M+  L+         D ADALA+A+C AY  +S  ++
Sbjct: 121 QVIYMVTKLLHLPHPPYPDDTADALAVAICTAYCVDSIAWR 161


>gi|329120727|ref|ZP_08249389.1| crossover junction endoribonuclease subunit C [Neisseria
           bacilliformis ATCC BAA-1200]
 gi|327460524|gb|EGF06860.1| crossover junction endoribonuclease subunit C [Neisseria
           bacilliformis ATCC BAA-1200]
          Length = 179

 Score =  224 bits (571), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 67/164 (40%), Positives = 100/164 (60%)

Query: 2   RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
            K +RI+GIDPG R TG+GI+D+ G    +V+SG I +     LA R+  + E L ++I 
Sbjct: 3   NKPLRILGIDPGSRTTGFGIIDLIGREHHYVASGCIKTIAGDELAGRIGVIVENLAEIID 62

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
            +RP++AAVE+VFVN +  +TL LGQAR  A+ +  +  +PV EY    +K+AV+G G  
Sbjct: 63  CYRPQQAAVEKVFVNANPASTLMLGQARGAAVAALVMRGLPVYEYTALQVKQAVVGQGKA 122

Query: 122 DKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
            K+Q+  M+  ++  S     DAAD LA A+ HA   NS   ++
Sbjct: 123 AKEQVQHMVVRMLRLSGTPQPDAADGLATALTHALRNNSLAARL 166


>gi|160942949|ref|ZP_02090188.1| hypothetical protein FAEPRAM212_00426 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445850|gb|EDP22853.1| hypothetical protein FAEPRAM212_00426 [Faecalibacterium prausnitzii
           M21/2]
          Length = 170

 Score =  224 bits (571), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 52/161 (32%), Positives = 89/161 (55%), Gaps = 1/161 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPG    GWG+V+ AG+    V  G + +        RL ++Y G+ +VI+  +
Sbjct: 1   MRVLGIDPGYAIVGWGVVEYAGNRFAPVDFGAVCTDAGVPFERRLDEVYTGIKEVIERTK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           PE  A+E++F   +    + + +AR + +L+ A A +P+ EY P  +K+AV G G   KK
Sbjct: 61  PEVLAIEKLFYQHNQTTVIGVAEARGVILLAAAQAGLPIYEYTPMQVKQAVTGYGKAVKK 120

Query: 125 QIHMMLKMLMPESF-FKGKDAADALAIAVCHAYHANSGYYK 164
           Q+  M ++L+      K  D ADALA+A+   +   +   +
Sbjct: 121 QVQEMTRVLLHLPAVPKPDDTADALAMAITFCHTNGNQLNR 161


>gi|312797265|ref|YP_004030187.1| Crossover junction endodeoxyribonuclease ruvC [Burkholderia
           rhizoxinica HKI 454]
 gi|312169040|emb|CBW76043.1| Crossover junction endodeoxyribonuclease ruvC (EC 3.1.22.4)
           [Burkholderia rhizoxinica HKI 454]
          Length = 194

 Score =  224 bits (571), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 66/157 (42%), Positives = 99/157 (63%), Gaps = 1/157 (0%)

Query: 4   SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           ++RI+GIDPGLR TG+G++D  G  L +V+SG I +     L  RL  +++G+  +I+  
Sbjct: 14  TMRILGIDPGLRVTGFGVIDKHGHALTYVASGVIRT-ANADLPSRLGTIFDGVATLIREH 72

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P++AA+E+VFVN +  +TL LGQAR  AI +    R+ V+EY    +K+AV+G G   K
Sbjct: 73  SPDQAAIEKVFVNVNPQSTLLLGQARGAAICALVSGRVSVAEYTALQLKQAVVGYGRATK 132

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
            Q+  M+  L+  S   G DAADAL +A+CHA    +
Sbjct: 133 DQMQQMVVRLLNLSGLPGTDAADALGMAICHANSGTA 169


>gi|209517512|ref|ZP_03266352.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia sp.
           H160]
 gi|295677646|ref|YP_003606170.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia sp.
           CCGE1002]
 gi|209502045|gb|EEA02061.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia sp.
           H160]
 gi|295437489|gb|ADG16659.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia sp.
           CCGE1002]
          Length = 180

 Score =  224 bits (571), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 64/156 (41%), Positives = 100/156 (64%), Gaps = 1/156 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGLR TG+G+++  G  L +V+SG I +     L  RL  ++ G++ +I+   
Sbjct: 1   MRILGIDPGLRVTGFGVIEQHGHTLRYVASGVIRT-ADADLPSRLGTIFAGISTLIREHA 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P++AA+E+VFVN +  +TL LGQAR  AI       +PV+EY    +K++V+G G   K+
Sbjct: 60  PDQAAIEKVFVNVNPQSTLLLGQARGAAICGLVAGGVPVAEYTALQLKQSVVGYGRATKE 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           Q+  M+  L+  S   G DAADAL +A+CHA+  ++
Sbjct: 120 QMQQMVVRLLSLSGVPGTDAADALGMAICHAHGGST 155


>gi|315122881|ref|YP_004063370.1| Holliday junction resolvase [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313496283|gb|ADR52882.1| Holliday junction resolvase [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 168

 Score =  224 bits (571), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 137/166 (82%), Positives = 148/166 (89%)

Query: 2   RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           RKSIRIIGIDPGLRRTGWGI+D  GDNLCFVSSGT+VSC +QSLA RL QLYEGL D+++
Sbjct: 3   RKSIRIIGIDPGLRRTGWGIIDAVGDNLCFVSSGTVVSCAQQSLAVRLRQLYEGLADIMR 62

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
           ++ PEEAAVEQVFVNKDAVATLKLGQARAIAILSPAL  I VSEYAPNTIKKAVIGVGHG
Sbjct: 63  DFHPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALTGISVSEYAPNTIKKAVIGVGHG 122

Query: 122 DKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
           DK+QIHMMLKML+P   FKGKDAADALAIAVCHA+H N   YKI S
Sbjct: 123 DKRQIHMMLKMLIPGIMFKGKDAADALAIAVCHAHHTNYNRYKIES 168


>gi|33598083|ref|NP_885726.1| Holliday junction resolvase [Bordetella parapertussis 12822]
 gi|44888436|sp|Q7W4U0|RUVC_BORPA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|33566641|emb|CAE38851.1| crossover junction endodeoxyribonuclease [Bordetella parapertussis]
          Length = 182

 Score =  224 bits (571), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 69/152 (45%), Positives = 99/152 (65%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPGLRRTG+G++D  G  L +V+SGTIV     SL  RL  + + L +V +  R
Sbjct: 1   MRVLGIDPGLRRTGFGVIDAEGMRLRYVASGTIVVPPALSLPERLKVILDNLREVARETR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ AA+E VF+N +  +TL LGQAR  A+ + A + + V EY    IKKAV+G G   K+
Sbjct: 61  PDVAALEIVFLNTNPASTLLLGQARGAALCALADSALDVHEYTALQIKKAVVGTGRAAKE 120

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
           Q+ MM++ L+        D+ADALA A+CHA+
Sbjct: 121 QVQMMVQRLLSLDGTPAPDSADALACAICHAH 152


>gi|90408543|ref|ZP_01216700.1| crossover junction endodeoxyribonuclease RuvC [Psychromonas sp.
           CNPT3]
 gi|90310362|gb|EAS38490.1| crossover junction endodeoxyribonuclease RuvC [Psychromonas sp.
           CNPT3]
          Length = 173

 Score =  223 bits (570), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 64/154 (41%), Positives = 99/154 (64%), Gaps = 1/154 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+GI++  G    +++SG I +    +LA +L  ++ G++++IK ++P 
Sbjct: 4   ILGIDPGSRITGYGIIEQKGAKCIYIASGCIRT-KGDTLAPKLDMIFSGISEIIKQYQPT 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+EQVF+ K+  + LKLGQAR  AI++   A + + EY+   IK+AV+G G   K Q+
Sbjct: 63  EFAIEQVFMGKNPDSALKLGQARGAAIVAATQADLYICEYSARQIKQAVVGTGAATKDQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
             M+  L+  S     DAAD LA+A+CHA+ A S
Sbjct: 123 QQMVVRLLQLSGTPQADAADGLAVAICHAHTAQS 156


>gi|167586149|ref|ZP_02378537.1| Holliday junction resolvase [Burkholderia ubonensis Bu]
          Length = 180

 Score =  223 bits (570), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 67/152 (44%), Positives = 101/152 (66%), Gaps = 1/152 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGLR TG+G++DV+G  L +V+SG I +     LA RL  +++G++ +++   
Sbjct: 1   MRILGIDPGLRVTGFGVIDVSGHRLAYVTSGVIRTPT-ADLATRLGTIFQGVSTLVREHA 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P++AA+E+VFVN +  +TL LGQAR  AI       +PV+EY    +K+AV+G G   K 
Sbjct: 60  PDQAAIEKVFVNVNPQSTLLLGQARGAAICGLVTGGLPVAEYTALQLKQAVVGYGRATKA 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
           Q+  M+  L+  S   G DAADAL +A+CHA+
Sbjct: 120 QMQEMVTRLLNLSGQPGTDAADALGMAICHAH 151


>gi|255262910|ref|ZP_05342252.1| crossover junction endodeoxyribonuclease RuvC [Thalassiobium sp.
           R2A62]
 gi|255105245|gb|EET47919.1| crossover junction endodeoxyribonuclease RuvC [Thalassiobium sp.
           R2A62]
          Length = 200

 Score =  223 bits (570), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 85/161 (52%), Positives = 110/161 (68%)

Query: 3   KSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
             +R++GIDPGLR  GWG++DV+G  L  V++G   S     LA RL  L+  L +VI+ 
Sbjct: 30  ADMRVLGIDPGLRNMGWGVIDVSGTRLSHVANGICKSSTGDILAERLLLLHGQLAEVIEQ 89

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
           + PE AAVEQ FVNKD   TLKLGQAR IA+L  A A + V EYAPN +KK V+GVGH D
Sbjct: 90  YAPETAAVEQTFVNKDGAGTLKLGQARGIAMLVAAQAGLSVGEYAPNAVKKTVVGVGHAD 149

Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYY 163
           K+Q+  M++M +P     G D+ADALAIA+CHA+HA S  +
Sbjct: 150 KRQVDHMVRMQLPGVQIVGPDSADALAIAICHAHHAQSQNH 190


>gi|117923792|ref|YP_864409.1| Holliday junction endonuclease RuvC [Magnetococcus sp. MC-1]
 gi|187611447|sp|A0L4W0|RUVC_MAGSM RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|117607548|gb|ABK43003.1| Holliday junction endonuclease RuvC [Magnetococcus sp. MC-1]
          Length = 180

 Score =  223 bits (570), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 65/158 (41%), Positives = 94/158 (59%)

Query: 2   RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
              IR+IGIDPG   TGWG++D  G     V  GTI    ++ L  RL Q++  L  +I+
Sbjct: 4   ASPIRVIGIDPGSNVTGWGVIDGLGQRQQVVEYGTIRLDGKEPLPMRLHQIHAQLVSLIQ 63

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
             +P E AVE+VFV+++  + LKLG AR  AI++ A   +P++EY    +KKAV+G G  
Sbjct: 64  RLQPHEMAVEEVFVSQNVQSALKLGHARGAAIVAGAQMGLPIAEYTAMQVKKAVVGYGRA 123

Query: 122 DKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHAN 159
           +K Q+  M++ML+       +DAAD LAIA+CH     
Sbjct: 124 EKNQMQEMMRMLLNLDKKPAQDAADGLAIAMCHLNQRQ 161


>gi|254976402|ref|ZP_05272874.1| crossover junction endodeoxyribonuclease RuvC [Clostridium
           difficile QCD-66c26]
 gi|255093788|ref|ZP_05323266.1| crossover junction endodeoxyribonuclease RuvC [Clostridium
           difficile CIP 107932]
 gi|255101978|ref|ZP_05330955.1| crossover junction endodeoxyribonuclease RuvC [Clostridium
           difficile QCD-63q42]
 gi|255307846|ref|ZP_05352017.1| crossover junction endodeoxyribonuclease RuvC [Clostridium
           difficile ATCC 43255]
 gi|255315539|ref|ZP_05357122.1| crossover junction endodeoxyribonuclease RuvC [Clostridium
           difficile QCD-76w55]
 gi|255518202|ref|ZP_05385878.1| crossover junction endodeoxyribonuclease RuvC [Clostridium
           difficile QCD-97b34]
 gi|255651318|ref|ZP_05398220.1| crossover junction endodeoxyribonuclease RuvC [Clostridium
           difficile QCD-37x79]
 gi|255656791|ref|ZP_05402200.1| crossover junction endodeoxyribonuclease RuvC [Clostridium
           difficile QCD-23m63]
 gi|260684382|ref|YP_003215667.1| Holliday junction resolvase [Clostridium difficile CD196]
 gi|260688041|ref|YP_003219175.1| Holliday junction resolvase [Clostridium difficile R20291]
 gi|296452379|ref|ZP_06894080.1| crossover junction endoribonuclease subunit C [Clostridium
           difficile NAP08]
 gi|296877728|ref|ZP_06901755.1| crossover junction endoribonuclease subunit C [Clostridium
           difficile NAP07]
 gi|306521150|ref|ZP_07407497.1| Holliday junction resolvase [Clostridium difficile QCD-32g58]
 gi|260210545|emb|CBA65077.1| crossover junction endodeoxyribonuclease RuvC [Clostridium
           difficile CD196]
 gi|260214058|emb|CBE06224.1| crossover junction endodeoxyribonuclease RuvC [Clostridium
           difficile R20291]
 gi|296258709|gb|EFH05603.1| crossover junction endoribonuclease subunit C [Clostridium
           difficile NAP08]
 gi|296431261|gb|EFH17081.1| crossover junction endoribonuclease subunit C [Clostridium
           difficile NAP07]
          Length = 169

 Score =  223 bits (570), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 50/154 (32%), Positives = 88/154 (57%), Gaps = 1/154 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + I+GIDPG+   G+GI++        +  G + +    +++ RL  +Y+G+  ++KN+ 
Sbjct: 1   MIILGIDPGIAIVGYGIIEYKNSKFKVIDYGAVTTPAHMNISRRLELVYKGIDTIVKNYN 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
            +E  +E++F NK+    + + QAR + +L+ A    PV EY P  +K+ V+G G  DK 
Sbjct: 61  IDEVGMEELFFNKNVKTAITVAQARGVTMLACAHNGKPVYEYTPLQVKQGVVGYGRADKA 120

Query: 125 QIHMMLKMLM-PESFFKGKDAADALAIAVCHAYH 157
           Q+  M+   +  +   K  D ADALA+A+CHA+ 
Sbjct: 121 QVQQMVTSFLSLKKVPKPDDVADALAVAICHAHS 154


>gi|291530843|emb|CBK96428.1| crossover junction endodeoxyribonuclease RuvC [Eubacterium siraeum
           70/3]
          Length = 167

 Score =  223 bits (569), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 56/166 (33%), Positives = 91/166 (54%), Gaps = 1/166 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RIIGIDPG    G+G+VD  G        G I +        RLC++YE    ++ +W+
Sbjct: 1   MRIIGIDPGYAIVGFGVVDYIGGKFSVKDFGAITTDKDTPFPKRLCEIYEDYCQILDSWK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  ++E+++   +    + + QAR I I++ A   I ++EY P  +K+AV+G G  +KK
Sbjct: 61  PDALSIERLYFTNNQKTGIDVAQARGIIIMAAAQRGIEINEYTPLQVKQAVVGYGQAEKK 120

Query: 125 QIHMMLKMLMPES-FFKGKDAADALAIAVCHAYHANSGYYKIASQD 169
           Q+  M K ++  S   K  D ADALA+ +CHA  + S    I + +
Sbjct: 121 QVQEMTKNILKLSCVPKPDDTADALAMTICHAQTSGSLLRNIKASN 166


>gi|294668120|ref|ZP_06733227.1| crossover junction endodeoxyribonuclease RuvC [Neisseria elongata
           subsp. glycolytica ATCC 29315]
 gi|291309828|gb|EFE51071.1| crossover junction endodeoxyribonuclease RuvC [Neisseria elongata
           subsp. glycolytica ATCC 29315]
          Length = 178

 Score =  223 bits (569), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 67/165 (40%), Positives = 100/165 (60%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M K +RI+GIDPG R TG+GI+DV G    +V+SG I +     LA R+  + E + ++I
Sbjct: 1   MNKPLRILGIDPGSRITGFGIIDVVGREHFYVASGCIKTIPGDELAGRIGIIVENIGEII 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             ++P++AAVEQVFVN +  ATL LGQAR  A+ +  +  +PV EY    +K+AV+G G 
Sbjct: 61  ACYKPQQAAVEQVFVNVNPAATLMLGQARGAAVAALVMRGLPVYEYTALQVKQAVVGQGK 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
             K+Q+  M+  ++  S     DAAD LA+A+ HA        ++
Sbjct: 121 AAKEQVQDMVVRMLGLSGTPQADAADGLAVALTHALRNQGLAARL 165


>gi|282601163|ref|ZP_05980968.2| crossover junction endodeoxyribonuclease RuvC [Subdoligranulum
           variabile DSM 15176]
 gi|282570075|gb|EFB75610.1| crossover junction endodeoxyribonuclease RuvC [Subdoligranulum
           variabile DSM 15176]
          Length = 194

 Score =  223 bits (569), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 49/162 (30%), Positives = 89/162 (54%), Gaps = 1/162 (0%)

Query: 3   KSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
           + +R++GIDPG    GWG+V+  G+    +  G I++        RLC++Y+ + DV + 
Sbjct: 28  RKLRVLGIDPGYAIVGWGVVEYVGNRFSPIGYGAILTEKDTPFEQRLCEIYDSVLDVCRR 87

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
           + PE  ++E+++   +    + + +AR + +L+ A   +P+ EY P  +K+A+ G G   
Sbjct: 88  YAPEALSIEKLYYQHNQTTVIGVAEARGVILLAAAQCGVPIYEYTPMQVKQAITGYGKAV 147

Query: 123 KKQIHMMLKMLMPES-FFKGKDAADALAIAVCHAYHANSGYY 163
           KKQI  M +M++      K  D ADAL +A+ H + + S   
Sbjct: 148 KKQIQEMTRMMLHLETIPKPDDTADALGMAIAHCHCSRSRLM 189


>gi|304393334|ref|ZP_07375262.1| crossover junction endodeoxyribonuclease RuvC [Ahrensia sp. R2A130]
 gi|303294341|gb|EFL88713.1| crossover junction endodeoxyribonuclease RuvC [Ahrensia sp. R2A130]
          Length = 169

 Score =  222 bits (568), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 95/157 (60%), Positives = 125/157 (79%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M  ++RI+GIDPGLR TGWG+V+  G  L F+++GT+ S  +  LA RL +L++GL DV+
Sbjct: 1   MNHTVRILGIDPGLRFTGWGVVESEGSRLRFIAAGTVKSNAKADLATRLRELHDGLQDVL 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
           +   P+EAAVE  FVNKDA ATLKLGQAR IA++ PALA +PV+EYAPN +KKAVIGVGH
Sbjct: 61  RAQSPDEAAVENTFVNKDATATLKLGQARGIAMVVPALAGLPVAEYAPNAVKKAVIGVGH 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYH 157
           GDKKQI +M+ ML+P++ +  +DAAD LAIA+CHA+H
Sbjct: 121 GDKKQIALMVGMLLPKAVWDTEDAADGLAIAICHAHH 157


>gi|319764354|ref|YP_004128291.1| crossover junction endodeoxyribonuclease ruvc [Alicycliphilus
           denitrificans BC]
 gi|330826348|ref|YP_004389651.1| crossover junction endodeoxyribonuclease RuvC [Alicycliphilus
           denitrificans K601]
 gi|317118915|gb|ADV01404.1| crossover junction endodeoxyribonuclease RuvC [Alicycliphilus
           denitrificans BC]
 gi|329311720|gb|AEB86135.1| crossover junction endodeoxyribonuclease RuvC [Alicycliphilus
           denitrificans K601]
          Length = 182

 Score =  222 bits (568), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 72/165 (43%), Positives = 105/165 (63%), Gaps = 3/165 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSC--VRQSLAFRLCQLYEGLTDVIKN 62
           +RI+GIDPGL+ TG+G+VDV G  L +V+SGTI +       L  RL  L++G+T+V   
Sbjct: 1   MRILGIDPGLQTTGFGVVDVDGQRLAYVASGTIRTTGLALGDLPGRLKLLFDGITEVAAR 60

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
           +RP+ AAVE VFVN +  +TL LGQAR  A+ +   A +PV+EY    +KKAV+G G   
Sbjct: 61  YRPDAAAVEIVFVNVNPQSTLLLGQARGAALTALVNADLPVAEYTALQMKKAVVGHGRAA 120

Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
           K Q+  M++ L+      G DAADAL +A+ HA+ A +   ++ +
Sbjct: 121 KSQVQEMVRRLLALPGLPGTDAADALGLAITHAH-AGAAMARVGA 164


>gi|126700423|ref|YP_001089320.1| Holliday junction resolvase [Clostridium difficile 630]
 gi|122973685|sp|Q183P3|RUVC_CLOD6 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|115251860|emb|CAJ69695.1| Crossover junction endodeoxyribonuclease RuvC (Holliday junction
           nuclease RuvC) (Holliday junction resolvase RuvC)
           [Clostridium difficile]
          Length = 169

 Score =  222 bits (568), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 50/154 (32%), Positives = 88/154 (57%), Gaps = 1/154 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + I+GIDPG+   G+GI++        +  G + +    +++ RL  +Y+G+  ++KN+ 
Sbjct: 1   MIILGIDPGIAIVGYGIIEYKNSKFKAIDYGAVTTPAHMNISRRLELVYKGIDTIVKNYN 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
            +E  +E++F NK+    + + QAR + +L+ A    PV EY P  +K+ V+G G  DK 
Sbjct: 61  IDEVGMEELFFNKNVKTAITVAQARGVTMLACAHNGKPVYEYTPLQVKQGVVGYGRADKA 120

Query: 125 QIHMMLKMLM-PESFFKGKDAADALAIAVCHAYH 157
           Q+  M+   +  +   K  D ADALA+A+CHA+ 
Sbjct: 121 QVQQMVTSFLSLKKVPKPDDVADALAVAICHAHS 154


>gi|119944487|ref|YP_942167.1| crossover junction endodeoxyribonuclease RuvC [Psychromonas
           ingrahamii 37]
 gi|166233289|sp|A1SSV3|RUVC_PSYIN RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|119863091|gb|ABM02568.1| crossover junction endodeoxyribonuclease RuvC [Psychromonas
           ingrahamii 37]
          Length = 173

 Score =  222 bits (568), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 62/154 (40%), Positives = 97/154 (62%), Gaps = 1/154 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G+V   G    +++SG I +    +LA +L  ++ G++++IK ++P 
Sbjct: 4   ILGIDPGSRITGYGVVQQKGSKCIYIASGCIRT-KGDTLAPKLDMIFNGISEIIKQYQPT 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E  +EQVF+ K+  + LKLGQAR  AI++   A + V EY+   IK+AV G G   K+Q+
Sbjct: 63  EFGIEQVFMAKNPDSALKLGQARGAAIVAATQADLYVCEYSARQIKQAVSGSGGATKEQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
             M+  ++  S     DAAD LA+A+CHA+ A +
Sbjct: 123 QQMVMQILNLSGRPQADAADGLAVAICHAHTAQT 156


>gi|119896862|ref|YP_932075.1| Holliday junction resolvase [Azoarcus sp. BH72]
 gi|166231579|sp|A1K2Y3|RUVC_AZOSB RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|119669275|emb|CAL93188.1| crossover junction endodeoxyribonuclease [Azoarcus sp. BH72]
          Length = 183

 Score =  222 bits (567), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 63/150 (42%), Positives = 93/150 (62%), Gaps = 1/150 (0%)

Query: 4   SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           + RI+G+DPGLR TG+G++D  G  L +V+SG I +     L  RL  L +G+ +VI  +
Sbjct: 9   ATRILGLDPGLRITGFGVIDTLGSQLRYVASGCIKTR-DGELPGRLKTLLDGVREVIATY 67

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +P+  AVE+VFVN +  +TL LGQAR   I       +PV+EY    +K++V+G G   K
Sbjct: 68  QPDAVAVEKVFVNVNPQSTLLLGQARGAVICGAVSCDLPVAEYTALQVKQSVVGYGKAAK 127

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVC 153
           +Q+  M++ L+      G DAADALA A+C
Sbjct: 128 EQVQHMVQRLLALDASPGPDAADALACAIC 157


>gi|312793293|ref|YP_004026216.1| crossover junction endodeoxyribonuclease ruvc [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312180433|gb|ADQ40603.1| crossover junction endodeoxyribonuclease RuvC [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 164

 Score =  222 bits (567), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 54/159 (33%), Positives = 88/159 (55%), Gaps = 2/159 (1%)

Query: 8   IGIDPGLRRTGWGIVD-VAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           +GIDPG+  TG+GIV+   G     +  G I +      + R   LY  L  +I  ++P+
Sbjct: 2   LGIDPGIALTGYGIVESKNGSEFKVIDYGRIETSSSLKKSMRFLHLYTELCSIISLYQPD 61

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+E++F NK++   + +G+AR + IL+     + + EY P  +K+++ G G  DK QI
Sbjct: 62  VVAIEELFFNKNSKTAITIGEARGVIILTCIQNNLSIYEYTPLQVKQSITGYGRADKTQI 121

Query: 127 HMMLKMLMPE-SFFKGKDAADALAIAVCHAYHANSGYYK 164
             M+K L+      K  D ADALA+A+CH   ++S  Y+
Sbjct: 122 QKMVKSLLSLPEIPKPDDVADALAVAMCHILSSSSVLYQ 160


>gi|299144014|ref|ZP_07037094.1| crossover junction endodeoxyribonuclease RuvC [Peptoniphilus sp.
           oral taxon 386 str. F0131]
 gi|298518499|gb|EFI42238.1| crossover junction endodeoxyribonuclease RuvC [Peptoniphilus sp.
           oral taxon 386 str. F0131]
          Length = 164

 Score =  222 bits (567), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 56/152 (36%), Positives = 88/152 (57%), Gaps = 1/152 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + I+GIDPG    G+GI++V G+    +  G I +  + S   RL ++Y  L D++K ++
Sbjct: 1   MIILGIDPGFAIVGYGIIEVVGNKYKVLDYGAITTDSKMSFPLRLEKIYLKLEDLVKKYK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P++ A E++F NK+A   + +  AR + IL   L    + EY P  IK+A+ G G  +KK
Sbjct: 61  PDDIAFEELFFNKNAKTAMAVSHARGVMILCGKLNHKELFEYTPLQIKQAIAGYGRAEKK 120

Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHA 155
           QI  M+K ++      K  D ADALA+A+ HA
Sbjct: 121 QIQEMVKFILKLKETPKPDDVADALAVAITHA 152


>gi|89902186|ref|YP_524657.1| Holliday junction resolvase [Rhodoferax ferrireducens T118]
 gi|123278409|sp|Q21SX7|RUVC_RHOFD RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|89346923|gb|ABD71126.1| crossover junction endodeoxyribonuclease RuvC [Rhodoferax
           ferrireducens T118]
          Length = 182

 Score =  222 bits (567), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 72/167 (43%), Positives = 107/167 (64%), Gaps = 3/167 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCV--RQSLAFRLCQLYEGLTDVIKN 62
           +RI+GIDPGLR TG+G++DVAG +L +V+SGTI +    +  L  RL  L++G+ +V+  
Sbjct: 1   MRILGIDPGLRTTGFGVIDVAGADLTYVASGTISTLHLDKGQLPARLKVLFDGIREVVAR 60

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
           ++PE A+VE VFVN +  +TL LGQAR   I +     +PV+EY    +K+AV+G G  D
Sbjct: 61  YQPECASVEIVFVNVNPQSTLLLGQARGACITALVSGDLPVAEYTALQMKQAVVGYGRAD 120

Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQD 169
           K Q+  M++ L+      G DAADAL +A+ HA+ A     ++A  D
Sbjct: 121 KSQVQEMVRRLLALPGLPGPDAADALGLAITHAHAAK-ALARLAQAD 166


>gi|313114600|ref|ZP_07800108.1| crossover junction endodeoxyribonuclease RuvC [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310623064|gb|EFQ06511.1| crossover junction endodeoxyribonuclease RuvC [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 170

 Score =  222 bits (567), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 54/161 (33%), Positives = 89/161 (55%), Gaps = 1/161 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPG    GWG+VD AG+    V  G + +        RL ++Y G+ +VI+  R
Sbjct: 1   MRVLGIDPGYAIVGWGVVDYAGNRFAPVDFGAVCTDAGVPFERRLDEVYAGIKEVIERTR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           PE  A+E++F   +    + + +AR + +L+ A A +P+ EY P  +K+AV G G   KK
Sbjct: 61  PEVLAIEKLFYQHNQTTVIGVAEARGVILLAAAQAGLPIYEYTPMQVKQAVTGYGKAVKK 120

Query: 125 QIHMMLKMLMPESF-FKGKDAADALAIAVCHAYHANSGYYK 164
           Q+  M ++L+      K  D ADALA+A+   +   +   +
Sbjct: 121 QVQEMTRVLLHLPAVPKPDDTADALAMAITFCHTNGNQLNR 161


>gi|291165808|gb|EFE27856.1| crossover junction endodeoxyribonuclease RuvC [Filifactor alocis
           ATCC 35896]
          Length = 163

 Score =  222 bits (567), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 52/156 (33%), Positives = 88/156 (56%), Gaps = 1/156 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + ++GIDPG    G+GI+D  G +   +  G+I +  ++    R+ ++Y+GL  +I+ + 
Sbjct: 1   MIVLGIDPGYAIVGYGILDYNGTSFRVIDYGSIETDAKEPFVDRIQRIYKGLCFLIEKYH 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
            EE A+E++F  K+A   + + QAR + +L+     IPV EY P  +K+ + G G   K+
Sbjct: 61  IEEMAIEELFFFKNAKTVIDVAQARGVMLLAAKEHNIPVYEYTPLQVKQGICGYGKAPKE 120

Query: 125 QIHMMLK-MLMPESFFKGKDAADALAIAVCHAYHAN 159
           Q+  M+K  L  +   K  D ADALAIA  H + + 
Sbjct: 121 QVQQMVKTTLRLKEVPKPDDTADALAIATNHCHTSR 156


>gi|225018934|ref|ZP_03708126.1| hypothetical protein CLOSTMETH_02885 [Clostridium methylpentosum
           DSM 5476]
 gi|224948278|gb|EEG29487.1| hypothetical protein CLOSTMETH_02885 [Clostridium methylpentosum
           DSM 5476]
          Length = 180

 Score =  222 bits (567), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 52/167 (31%), Positives = 84/167 (50%), Gaps = 1/167 (0%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M + ++IIGIDPG    GWG+V         +  G I +        RL  +Y  L  ++
Sbjct: 1   MDEQMKIIGIDPGYAIVGWGVVSYNRTKFTTLDYGAITTHASMPFEQRLLAVYNELDLLL 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
           +  +P+  +VE++F + +    + + QAR + +L+     IP  +Y P  +K +V+G G 
Sbjct: 61  RMHKPDAMSVEKLFFSNNQKTAIDVAQARGVILLAATQHGIPCYQYTPLQVKLSVVGYGK 120

Query: 121 GDKKQIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHANSGYYKIA 166
             K Q+  M K L+      K  D ADALAIA+ HA+  NS    ++
Sbjct: 121 AVKSQVMEMTKRLLHLKEVPKPDDTADALAIAITHAHSFNSRISSVS 167


>gi|117621378|ref|YP_855842.1| Holliday junction resolvase [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
 gi|166231575|sp|A0KHU1|RUVC_AERHH RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|117562785|gb|ABK39733.1| crossover junction endodeoxyribonuclease RuvC [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 173

 Score =  222 bits (567), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 64/163 (39%), Positives = 103/163 (63%), Gaps = 2/163 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++ +      ++ SG I + +   L  RL Q+Y+G++++I  ++P+
Sbjct: 4   ILGIDPGSRITGYGVIRIVAGKAEYLGSGCIRTDLG-ELPSRLKQVYDGVSEIITQFKPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E+VF+ ++A + LKLGQAR  AI++   A +PVSEY+   IK+AV+G G   K+Q+
Sbjct: 63  EFAIERVFMARNADSALKLGQARGSAIVAAVNALLPVSEYSATQIKQAVVGTGGAAKEQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQD 169
             M+  L+  S     DAADAL +A+CH +       K+A + 
Sbjct: 123 QHMVTHLLKLSATPQADAADALGVALCHFHTRQI-LIKMAGRS 164


>gi|160896927|ref|YP_001562509.1| Holliday junction resolvase [Delftia acidovorans SPH-1]
 gi|238687185|sp|A9BUL6|RUVC_DELAS RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|160362511|gb|ABX34124.1| crossover junction endodeoxyribonuclease RuvC [Delftia acidovorans
           SPH-1]
          Length = 182

 Score =  222 bits (567), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 70/165 (42%), Positives = 104/165 (63%), Gaps = 3/165 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSC--VRQSLAFRLCQLYEGLTDVIKN 62
           +RI+GIDPGL+ TG+G++DV G  L +V+SGTI +       L  RL  L++G+++V   
Sbjct: 1   MRILGIDPGLQTTGFGVIDVDGHRLAYVASGTIRTTGIALGDLPGRLKLLFDGISEVASR 60

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
           ++P+ +AVE VFVN +  +TL LGQAR  A+ +   A +PV+EY    +KKA+ G G   
Sbjct: 61  YQPDTSAVEIVFVNVNPQSTLLLGQARGAALTALVNAGLPVAEYTALQMKKAMTGHGRAA 120

Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
           K QI  M++ L+      G DAADAL +A+ HA+ A +   K+A 
Sbjct: 121 KSQIQEMVRRLLQLPGLPGTDAADALGLAITHAH-AGAAMSKMAE 164


>gi|33602976|ref|NP_890536.1| Holliday junction resolvase [Bordetella bronchiseptica RB50]
 gi|44888439|sp|Q7WGB7|RUVC_BORBR RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|33568607|emb|CAE34365.1| crossover junction endodeoxyribonuclease [Bordetella bronchiseptica
           RB50]
          Length = 182

 Score =  222 bits (566), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 68/152 (44%), Positives = 99/152 (65%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPGLRRTG+G++D  G  L +V+SGTIV     +L  RL  + + L +V +  R
Sbjct: 1   MRVLGIDPGLRRTGFGVIDAEGMRLRYVASGTIVVPPALALPERLKVILDNLREVARETR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ AA+E VF+N +  +TL LGQAR  A+ + A + + V EY    IKKAV+G G   K+
Sbjct: 61  PDVAALEIVFLNTNPASTLLLGQARGAALCALADSALDVHEYTALQIKKAVVGTGRAAKE 120

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
           Q+ MM++ L+        D+ADALA A+CHA+
Sbjct: 121 QVQMMVQRLLSLDGTPAPDSADALACAICHAH 152


>gi|222529106|ref|YP_002572988.1| Holliday junction resolvase [Caldicellulosiruptor bescii DSM 6725]
 gi|222455953|gb|ACM60215.1| crossover junction endodeoxyribonuclease RuvC [Caldicellulosiruptor
           bescii DSM 6725]
          Length = 164

 Score =  222 bits (566), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 52/159 (32%), Positives = 88/159 (55%), Gaps = 2/159 (1%)

Query: 8   IGIDPGLRRTGWGIVD-VAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           +GIDPG+  TG+GI++   G     +  G I +      + R   LY  L  +I  ++P+
Sbjct: 2   LGIDPGIALTGYGIIESKNGSEFKVIDYGRIETSSSLKKSMRFLHLYTELCSIISLYQPD 61

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+E++F NK++   + +G+AR + IL+     + + EY P  +K+++ G G  +K QI
Sbjct: 62  VVAIEELFFNKNSKTAITIGEARGVIILTCIQNNLSIYEYTPLQVKQSITGYGRANKTQI 121

Query: 127 HMMLKMLMPE-SFFKGKDAADALAIAVCHAYHANSGYYK 164
             M+K L+      K  D ADALA+A+CH   ++S  Y+
Sbjct: 122 QKMVKSLLSLPEIPKPDDVADALAVAMCHILSSSSVLYQ 160


>gi|304320106|ref|YP_003853749.1| Holliday junction resolvase [Parvularcula bermudensis HTCC2503]
 gi|303299009|gb|ADM08608.1| Holliday junction resolvase [Parvularcula bermudensis HTCC2503]
          Length = 170

 Score =  222 bits (566), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 86/160 (53%), Positives = 109/160 (68%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M + +RIIGIDPGLR TGWG+++  G  L FV+SG I    +  LA RL +L   L  V+
Sbjct: 1   MERCVRIIGIDPGLRATGWGVIETEGTRLRFVASGFIRPATKTDLAQRLYRLSCELAAVL 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
            + RP+EAAVE+ FVN D  + LKLGQAR I +  PA    PV+EYAPNTIKKAV+GVGH
Sbjct: 61  DSHRPDEAAVEETFVNADPRSALKLGQARGICLAGPAALGCPVAEYAPNTIKKAVVGVGH 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
            DK+Q+  M+  L+P++     D ADALAIA+CHA H  S
Sbjct: 121 ADKRQVAAMVARLLPKAGTPANDEADALAIAICHASHRGS 160


>gi|312113734|ref|YP_004011330.1| crossover junction endodeoxyribonuclease RuvC [Rhodomicrobium
           vannielii ATCC 17100]
 gi|311218863|gb|ADP70231.1| crossover junction endodeoxyribonuclease RuvC [Rhodomicrobium
           vannielii ATCC 17100]
          Length = 173

 Score =  222 bits (566), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 82/158 (51%), Positives = 111/158 (70%), Gaps = 1/158 (0%)

Query: 1   MRKS-IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDV 59
           M K  +RI+G+DPGL   GWG+VD  G  L FV+ GTI +   +++  RL  L+EGL +V
Sbjct: 1   MPKPPVRILGLDPGLCHLGWGVVDWDGQRLTFVACGTIDTGAGEAMGQRLTALFEGLNEV 60

Query: 60  IKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVG 119
           ++   P+EAA+E+ FVN +A A LKLGQAR +A+L PA   + V+EYAPN+IKK V G G
Sbjct: 61  VRAHAPDEAAIEETFVNTNARAALKLGQARGVALLVPARLGLSVAEYAPNSIKKTVTGAG 120

Query: 120 HGDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYH 157
           H DK QI  ML+ L+P++     DAADALA+A+CHA+H
Sbjct: 121 HADKVQIRTMLRYLLPKAQPATPDAADALAVAICHAHH 158


>gi|241759178|ref|ZP_04757286.1| crossover junction endodeoxyribonuclease RuvC [Neisseria flavescens
           SK114]
 gi|241320597|gb|EER56874.1| crossover junction endodeoxyribonuclease RuvC [Neisseria flavescens
           SK114]
          Length = 181

 Score =  222 bits (566), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 63/157 (40%), Positives = 98/157 (62%)

Query: 3   KSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
           +  RI+GIDPG R TG+G++DV G    +V+SG I +    SL+ R+  +   + ++I++
Sbjct: 5   QPTRILGIDPGSRVTGFGVIDVHGREHHYVASGCIKTPTGASLSERIAVIVRHIDEIIRH 64

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
           ++P +AA+EQVFVN +  ATL LGQAR  AI +  +  +PV EY    +K+AV+G G   
Sbjct: 65  YQPHQAAIEQVFVNVNPAATLMLGQARGAAIAALVMHDLPVFEYTALQVKQAVVGKGKAA 124

Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHAN 159
           K+Q+  M+  ++  S     DAAD LA+A+ HA   +
Sbjct: 125 KEQVQHMVVQMLALSGTPQADAADGLAVALTHALRNH 161


>gi|298369672|ref|ZP_06980989.1| crossover junction endodeoxyribonuclease RuvC [Neisseria sp. oral
           taxon 014 str. F0314]
 gi|298282229|gb|EFI23717.1| crossover junction endodeoxyribonuclease RuvC [Neisseria sp. oral
           taxon 014 str. F0314]
          Length = 182

 Score =  222 bits (566), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 62/164 (37%), Positives = 101/164 (61%)

Query: 2   RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
            ++ RI+GIDPG R TG+G++DV G    +V+SG I +     L+ R+  +   + ++++
Sbjct: 5   PQTTRILGIDPGSRVTGFGVIDVCGREHFYVASGCIKTPPDAPLSERIAVIVRHIGEIVR 64

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
            +RP++AAVEQVFVN +  +TL LGQAR  A+ +  +  +PVSEY    +K+AV+G G  
Sbjct: 65  LYRPQQAAVEQVFVNVNPASTLMLGQARGAALAALVMHELPVSEYTALQVKQAVVGKGKA 124

Query: 122 DKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
            K+Q+  M+  ++  S     DAAD LA+A+ HA   +    ++
Sbjct: 125 AKEQVQHMVVQMLSLSGTPQSDAADGLAVALTHALRNHGLAAQL 168


>gi|317402226|gb|EFV82815.1| crossover junction endodeoxyribonuclease ruvC [Achromobacter
           xylosoxidans C54]
          Length = 182

 Score =  221 bits (565), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 67/152 (44%), Positives = 100/152 (65%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPGLRRTG+G++D  G  L +V+SGTIV     +L+ RL  + + L  V ++ +
Sbjct: 1   MRVLGIDPGLRRTGFGVIDADGPRLRYVASGTIVVPPALTLSERLKVILDNLRQVARDTQ 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ AA+E VF+N +  +TL LGQAR  A+ + A + + V EY    IKKAV+G G   K+
Sbjct: 61  PDVAALEIVFLNTNPASTLLLGQARGAALCALADSSLAVHEYTALQIKKAVVGTGRAAKE 120

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
           Q+ MM++ L+        D+ADALA A+CHA+
Sbjct: 121 QVQMMVQHLLALDGTPAPDSADALACAICHAH 152


>gi|145590057|ref|YP_001156654.1| crossover junction endodeoxyribonuclease RuvC [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
 gi|189046072|sp|A4T026|RUVC_POLSQ RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|145048463|gb|ABP35090.1| crossover junction endodeoxyribonuclease RuvC [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
          Length = 172

 Score =  221 bits (565), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 70/156 (44%), Positives = 105/156 (67%), Gaps = 1/156 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVS-CVRQSLAFRLCQLYEGLTDVIKNW 63
           +R IGIDPGLR TG+G++DV G  L +V+SGTI S    + L  RL  LY G+ +V++ +
Sbjct: 1   MRWIGIDPGLRITGFGVIDVDGQKLTYVASGTIESGDPAKGLPERLGALYAGVKEVLETY 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RPE+AA+E+VF+N +  +TL LGQAR   I +    ++PV+EY+   +K+A++G G   K
Sbjct: 61  RPEQAAIEEVFLNVNPRSTLMLGQARGAVIAALVSEKLPVAEYSALRVKQAIVGTGRAAK 120

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHAN 159
            Q+  M+K L+  S   G DA+DAL +A+C A+H+ 
Sbjct: 121 PQVQEMVKRLLRLSRAPGTDASDALGVAICAAHHSQ 156


>gi|308389525|gb|ADO31845.1| crossover junction endodeoxyribonuclease [Neisseria meningitidis
           alpha710]
 gi|325130496|gb|EGC53253.1| crossover junction endodeoxyribonuclease RuvC [Neisseria
           meningitidis OX99.30304]
          Length = 178

 Score =  221 bits (565), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 66/165 (40%), Positives = 101/165 (61%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M  ++RI+GIDPG R TG+GI+DV G +  +V+SG I +     LA R+  +   + +V+
Sbjct: 1   MSATVRILGIDPGSRVTGFGIIDVRGRDHFYVASGCIKTPPDAPLADRIAVIVRHIGEVV 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             ++P++AAVEQVFVN +  +TL LGQAR  A+ +     +PVSEY    +K+AV+G G 
Sbjct: 61  AVYKPQQAAVEQVFVNVNPASTLMLGQARGAALAALVSHGLPVSEYTALQVKQAVVGKGK 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
             K+Q+  M+  ++  S     DAAD LA+A+ HA   +    K+
Sbjct: 121 AAKEQVQHMVVQMLGLSGTPQADAADGLAVALTHALRNHGLAAKL 165


>gi|222112137|ref|YP_002554401.1| holliday junction resolvase [Acidovorax ebreus TPSY]
 gi|254767470|sp|B9MFQ0|RUVC_DIAST RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|221731581|gb|ACM34401.1| crossover junction endodeoxyribonuclease RuvC [Acidovorax ebreus
           TPSY]
          Length = 186

 Score =  221 bits (565), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 70/169 (41%), Positives = 104/169 (61%), Gaps = 7/169 (4%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQ------SLAFRLCQLYEGLTD 58
           +RI+GIDPGL+ TG+G+VDV G  L +V+SGTI +  R        L  RL  L++G+++
Sbjct: 1   MRILGIDPGLQTTGFGVVDVDGHRLRYVASGTIRTTGRATGLALGDLPGRLKVLFDGVSE 60

Query: 59  VIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGV 118
           V   ++P  AAVE +FVN +  +TL LGQAR  A+ +   A +PV+EY    +KKAV+G 
Sbjct: 61  VAARYQPSTAAVEIIFVNVNPQSTLLLGQARGAALTALVNANLPVAEYTALQMKKAVVGH 120

Query: 119 GHGDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
           G   K Q+  M++ L+      G DAADAL +A+ HA+ A +   ++  
Sbjct: 121 GRAAKSQVQEMVRRLLELPGLPGTDAADALGLAITHAH-AGAAMARVGE 168


>gi|19703559|ref|NP_603121.1| Holliday junction resolvase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|296327632|ref|ZP_06870175.1| crossover junction endoribonuclease subunit C [Fusobacterium
           nucleatum subsp. nucleatum ATCC 23726]
 gi|22096144|sp|Q8RGS0|RUVC_FUSNN RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|19713657|gb|AAL94420.1| Crossover junction endodeoxyribonuclease ruvC [Fusobacterium
           nucleatum subsp. nucleatum ATCC 25586]
 gi|296155222|gb|EFG95996.1| crossover junction endoribonuclease subunit C [Fusobacterium
           nucleatum subsp. nucleatum ATCC 23726]
          Length = 190

 Score =  221 bits (565), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 50/157 (31%), Positives = 82/157 (52%), Gaps = 1/157 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R+IGIDPG    G+GI+D   +    V  G +++    S   RL  +Y+ +  ++K ++
Sbjct: 1   MRVIGIDPGTAIVGYGIIDYDKNKYSIVDYGVVLTSKDLSTEERLEIVYDEIDKILKKYK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           PE  A+E +F  K+    + + QAR + +L+     I ++ Y P  +K  + G G  +KK
Sbjct: 61  PEFMAIEDLFYFKNNKTVISVAQARGVILLAGKQNNIAMTSYTPLQVKIGITGYGKAEKK 120

Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHANS 160
           QI  M++  +      K  DAADALAI + H     S
Sbjct: 121 QIQQMVQKFLGLSEIPKPDDAADALAICITHINSLGS 157


>gi|319639478|ref|ZP_07994227.1| crossover junction endodeoxyribonuclease ruvC [Neisseria mucosa
           C102]
 gi|317399244|gb|EFV79916.1| crossover junction endodeoxyribonuclease ruvC [Neisseria mucosa
           C102]
          Length = 181

 Score =  221 bits (565), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 62/158 (39%), Positives = 97/158 (61%)

Query: 2   RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
            +  RI+GIDPG R TG+G++D  G    +V+SG I +    SL+ R+  +   + ++I+
Sbjct: 4   SQPTRILGIDPGSRVTGFGVIDAHGREHHYVASGCIKTPTGASLSERIAVIVRHIDEIIR 63

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
           +++P +AA+EQVFVN +  ATL LGQAR  AI +  +  +PV EY    +K+AV+G G  
Sbjct: 64  HYQPHQAAIEQVFVNVNPAATLMLGQARGAAIAALVMHGLPVFEYTALQVKQAVVGKGKA 123

Query: 122 DKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHAN 159
            K+Q+  M+  ++  S     DAAD LA+A+ HA   +
Sbjct: 124 AKEQVQHMVVQMLALSGTPQADAADGLAVALTHALRNH 161


>gi|293603640|ref|ZP_06686061.1| crossover junction endoribonuclease subunit C [Achromobacter
           piechaudii ATCC 43553]
 gi|292818076|gb|EFF77136.1| crossover junction endoribonuclease subunit C [Achromobacter
           piechaudii ATCC 43553]
          Length = 182

 Score =  221 bits (565), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 68/152 (44%), Positives = 101/152 (66%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPGLRRTG+G++D  G  L +V+SGTIV     +LA RL  + + L +V ++ +
Sbjct: 1   MRVLGIDPGLRRTGFGVIDAEGSRLRYVASGTIVVPPALTLAERLKVILDNLREVARDTQ 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ AA+E VF+N +  +TL LGQAR  A+ + A + + V EY    IKKAV+G G   K+
Sbjct: 61  PDVAALEIVFLNTNPASTLLLGQARGAALCALADSSLAVHEYTALQIKKAVVGTGRAAKE 120

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
           Q+ MM++ L+        D+ADALA A+CHA+
Sbjct: 121 QVQMMVQHLLSLDGVPAPDSADALACAICHAH 152


>gi|307826388|ref|ZP_07656590.1| crossover junction endodeoxyribonuclease RuvC [Methylobacter
           tundripaludum SV96]
 gi|307732565|gb|EFO03440.1| crossover junction endodeoxyribonuclease RuvC [Methylobacter
           tundripaludum SV96]
          Length = 165

 Score =  221 bits (565), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 63/157 (40%), Positives = 103/157 (65%), Gaps = 1/157 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPG R TG+GI++ +     +++SG+I          RL Q+++G+ DV++ ++
Sbjct: 1   MRILGIDPGSRITGYGIIEESSRGYKYIASGSIH-IKADYFPDRLKQIFDGILDVVERYQ 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           PE+ A+EQVF++K+A + LKLGQAR  AI +     +PV EYA   +K+AV+G G  +K 
Sbjct: 60  PEQMAIEQVFMHKNADSALKLGQARGAAICAFQTTGLPVFEYAARQVKQAVVGKGSAEKT 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSG 161
           Q+  M+K+L+        DA+DAL I++CHA++  + 
Sbjct: 120 QVQHMVKILLNIQGELQIDASDALGISICHAHYQQTA 156


>gi|167750453|ref|ZP_02422580.1| hypothetical protein EUBSIR_01429 [Eubacterium siraeum DSM 15702]
 gi|167656604|gb|EDS00734.1| hypothetical protein EUBSIR_01429 [Eubacterium siraeum DSM 15702]
          Length = 167

 Score =  221 bits (565), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 56/166 (33%), Positives = 89/166 (53%), Gaps = 1/166 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RIIGIDPG    G+G+VD  G        G I +        RLC++YE    ++ NW+
Sbjct: 1   MRIIGIDPGYAIVGFGVVDYIGGKFSVKDFGAITTDKDTPFPKRLCEIYEDYCQILDNWK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  ++E+++   +    + + QAR I I++ A   I ++EY P  +K+AV+G G   KK
Sbjct: 61  PDALSIERLYFTNNQKTGIDVAQARGIIIMAAAQRGIEINEYTPLQVKQAVVGYGQAVKK 120

Query: 125 QIHMMLKMLMPES-FFKGKDAADALAIAVCHAYHANSGYYKIASQD 169
           Q+  M K ++      K  D ADALA+ +CHA  + S    I + +
Sbjct: 121 QVQEMTKNILKLPFVPKPDDTADALAMTICHAQTSGSLLRNIKTSN 166


>gi|325128477|gb|EGC51357.1| crossover junction endodeoxyribonuclease RuvC [Neisseria
           meningitidis N1568]
          Length = 178

 Score =  221 bits (564), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 67/165 (40%), Positives = 102/165 (61%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M  S+RI+GIDPG R TG+G++DV G +  +V+SG I +     LA R+  +   + +VI
Sbjct: 1   MAASVRILGIDPGSRVTGFGVIDVRGRDHFYVASGCIKTPADAPLADRIAVIVRHIGEVI 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             ++P++AAVEQVFVN +  +TL LGQAR  A+ +    ++PVSEY    +K+AV+G G 
Sbjct: 61  TVYKPQQAAVEQVFVNVNPASTLMLGQARGAALAALVSHKLPVSEYTALQVKQAVVGKGK 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
             K+Q+  M+  ++  S     DAAD LA+A+ HA   +    K+
Sbjct: 121 AAKEQVQHMVVQMLGLSGTPQPDAADGLAVALTHALRNHGLAAKL 165


>gi|319781016|ref|YP_004140492.1| crossover junction endodeoxyribonuclease RuvC [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
 gi|317166904|gb|ADV10442.1| crossover junction endodeoxyribonuclease RuvC [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
          Length = 169

 Score =  221 bits (564), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 108/166 (65%), Positives = 136/166 (81%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M ++IRIIGIDPGLRRTGWGIV+  G++L F++SGT+ S  + +LA RLCQL++GL +V+
Sbjct: 1   MAEAIRIIGIDPGLRRTGWGIVESLGNSLRFIASGTVKSDDKAALATRLCQLHDGLAEVL 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
               P EAAVEQ FVNKDAVATLKLGQAR IA+L PA A + V+EYAPN +KKAVIGVGH
Sbjct: 61  HAAMPHEAAVEQTFVNKDAVATLKLGQARGIAMLVPARAGLVVAEYAPNAVKKAVIGVGH 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
           GDKKQIHMM+K+L+P++ F  + AADALAIA+CHA+H  S  Y++A
Sbjct: 121 GDKKQIHMMVKVLLPKAVFDTEHAADALAIAICHAHHRQSVAYRMA 166


>gi|255067254|ref|ZP_05319109.1| crossover junction endodeoxyribonuclease RuvC [Neisseria sicca ATCC
           29256]
 gi|255048405|gb|EET43869.1| crossover junction endodeoxyribonuclease RuvC [Neisseria sicca ATCC
           29256]
          Length = 180

 Score =  221 bits (564), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 67/165 (40%), Positives = 100/165 (60%)

Query: 2   RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           +KS+RI+GIDPG R TG+GI+DV G    +V+SG I +     LA R+  +   + ++++
Sbjct: 4   QKSVRILGIDPGSRVTGFGIIDVCGREHFYVASGCIKTPPNAPLAERIAVIARHIREIVQ 63

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
            +RP +AAVEQVFVN +  ATL LGQAR  A+    +  +PV EY    +K+AV+G G  
Sbjct: 64  QYRPHQAAVEQVFVNVNPAATLMLGQARGAALAVLVMEGLPVFEYTALQVKQAVVGKGKA 123

Query: 122 DKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
            K+Q+  M+  ++  S     DAAD LAIA+ HA   +    ++ 
Sbjct: 124 AKEQVQHMVVQMLSLSGTPQSDAADGLAIALTHALRNHGLAAQLG 168


>gi|330815561|ref|YP_004359266.1| Crossover junction endodeoxyribonuclease RuvC [Burkholderia
           gladioli BSR3]
 gi|327367954|gb|AEA59310.1| Crossover junction endodeoxyribonuclease RuvC [Burkholderia
           gladioli BSR3]
          Length = 180

 Score =  220 bits (563), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 67/156 (42%), Positives = 104/156 (66%), Gaps = 1/156 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RIIGIDPGLR TG+G++DV G  L +V+SG I +     L+ RL  +++G++ +++ +R
Sbjct: 1   MRIIGIDPGLRVTGFGVIDVQGSRLAYVTSGVIRTPS-AELSVRLGTIFDGVSTLVREYR 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+++A+E+VFVN +  +TL LGQAR  AI       + V+EY P  +K+AV+G G   K+
Sbjct: 60  PDQSAIEKVFVNVNPQSTLLLGQARGAAICGLVAGGMAVAEYTPTQLKQAVVGYGRATKE 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           Q+  M+  L+  S   G DAADAL +A+CHA   ++
Sbjct: 120 QMQQMVVRLLGLSGLPGTDAADALGMAICHANAGDA 155


>gi|88811438|ref|ZP_01126693.1| Crossover junction endodeoxyribonuclease RuvC [Nitrococcus mobilis
           Nb-231]
 gi|88791327|gb|EAR22439.1| Crossover junction endodeoxyribonuclease RuvC [Nitrococcus mobilis
           Nb-231]
          Length = 173

 Score =  220 bits (563), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 71/167 (42%), Positives = 98/167 (58%), Gaps = 1/167 (0%)

Query: 2   RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
               RI+GIDPGLR TG+G++ V G  L +V SG I       L  RL  L+E L  V+ 
Sbjct: 5   SSPRRILGIDPGLRITGYGVITVNGSRLAYVGSGIIR-IPDGPLPERLNILFEQLAHVLA 63

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
            + P  AAVEQVFV+++  + LKLG AR  AI + A A + V+EY P  IK+A++G G+ 
Sbjct: 64  QYEPVTAAVEQVFVHRNPSSALKLGHARGAAICACAQAGLTVAEYTPRRIKQALVGTGNA 123

Query: 122 DKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
           DK+Q+  M++ L+        DAADALA AVCHA+       +   +
Sbjct: 124 DKQQVQYMVQSLLGLRGNLRVDAADALATAVCHAHGQRFDCARAGEK 170


>gi|11279725|pir||C81857 crossover junction endoribonuclease (EC 3.1.22.4) NMA1631
           [imported] - Neisseria meningitidis (strain Z2491
           serogroup A)
 gi|121052431|emb|CAM08767.1| crossover junction endodeoxyribonuclease [Neisseria meningitidis
           Z2491]
          Length = 180

 Score =  220 bits (563), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 65/165 (39%), Positives = 102/165 (61%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M  ++RI+GIDPG R TG+G++DV G +  +V+SG I +     LA R+  +   + +V+
Sbjct: 3   MSATVRILGIDPGSRVTGFGVIDVRGRDHFYVASGCIKTPADAPLADRIAVIVRHIGEVV 62

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             ++P++AAVEQVFVN +  +TL LGQAR  A+ +    ++PVSEY    +K+AV+G G 
Sbjct: 63  TVYKPQQAAVEQVFVNVNPASTLMLGQARGAALAALVSHKLPVSEYTALQVKQAVVGKGK 122

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
             K+Q+  M+  ++  S     DAAD LA+A+ HA   +    K+
Sbjct: 123 AAKEQVQHMVVQMLGLSGTPQPDAADGLAVALTHALRNHGLAAKL 167


>gi|34763629|ref|ZP_00144559.1| Crossover junction endodeoxyribonuclease ruvC [Fusobacterium
           nucleatum subsp. vincentii ATCC 49256]
 gi|27886706|gb|EAA23849.1| Crossover junction endodeoxyribonuclease ruvC [Fusobacterium
           nucleatum subsp. vincentii ATCC 49256]
          Length = 190

 Score =  220 bits (563), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 50/157 (31%), Positives = 81/157 (51%), Gaps = 1/157 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R+IGIDPG    G+GI+D   +    V  G +++    S   RL  +Y  +  ++K ++
Sbjct: 1   MRVIGIDPGTAIVGYGIIDYDKNKYSIVDYGVVLTSKDLSTEERLEIVYSEIDKILKKYK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           PE  A+E +F  K+    + + QAR + +L+     I +S Y P  +K  + G G  +KK
Sbjct: 61  PEFMAIEDLFYFKNNKTVISVAQARGVILLAGKQNNIAMSSYTPLQVKIGITGYGKAEKK 120

Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHANS 160
           Q+  M++  +      K  DAADALAI + H     S
Sbjct: 121 QVQQMVQKFLGLSEIPKPDDAADALAICITHINSLGS 157


>gi|260467056|ref|ZP_05813236.1| crossover junction endodeoxyribonuclease RuvC [Mesorhizobium
           opportunistum WSM2075]
 gi|259029165|gb|EEW30461.1| crossover junction endodeoxyribonuclease RuvC [Mesorhizobium
           opportunistum WSM2075]
          Length = 170

 Score =  220 bits (563), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 109/167 (65%), Positives = 136/167 (81%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M  +IRIIGIDPGLRRTGWGIV+  G++L FV+SGT+ S  + +LA RLCQL++GL +V+
Sbjct: 1   MGDAIRIIGIDPGLRRTGWGIVESLGNSLRFVASGTVRSEDKAALATRLCQLHDGLAEVL 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
               P EAAVEQ FVNKDAVATLKLGQAR IA+L PA A + V+EYAPN +KKAVIGVGH
Sbjct: 61  HAAMPHEAAVEQTFVNKDAVATLKLGQARGIAMLVPARAGLVVAEYAPNAVKKAVIGVGH 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
           GDKKQIHMM+K+L+P++ F  + AADALAIA+CHA+H  S  Y++A+
Sbjct: 121 GDKKQIHMMVKVLLPKATFDTEHAADALAIAICHAHHRQSVAYRMAA 167


>gi|13473342|ref|NP_104909.1| Holliday junction resolvase [Mesorhizobium loti MAFF303099]
 gi|20978750|sp|Q98F72|RUVC_RHILO RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|14024091|dbj|BAB50695.1| Holliday junction nuclease; RuvC [Mesorhizobium loti MAFF303099]
          Length = 169

 Score =  220 bits (563), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 109/166 (65%), Positives = 135/166 (81%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M  +IRIIGIDPGLRRTGWGIV+  G++L FV+SGT+ S  + +LA RLCQL++GL +V+
Sbjct: 1   MGDAIRIIGIDPGLRRTGWGIVESLGNSLRFVASGTVRSEDKAALATRLCQLHDGLAEVL 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
               P EAAVEQ FVNKDAVATLKLGQAR IA+L PA A + V+EYAPN +KKAVIGVGH
Sbjct: 61  HAAMPHEAAVEQTFVNKDAVATLKLGQARGIAMLVPARAGLVVAEYAPNAVKKAVIGVGH 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
           GDKKQIHMM+K+L+P++ F  + AADALAIA+CHA+H  S  Y++A
Sbjct: 121 GDKKQIHMMVKVLLPKATFDTEHAADALAIAICHAHHRQSAAYRMA 166


>gi|312877192|ref|ZP_07737161.1| crossover junction endodeoxyribonuclease RuvC [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311796001|gb|EFR12361.1| crossover junction endodeoxyribonuclease RuvC [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 164

 Score =  220 bits (563), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 54/159 (33%), Positives = 88/159 (55%), Gaps = 2/159 (1%)

Query: 8   IGIDPGLRRTGWGIVD-VAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           +GIDPG+  TG+GIV+   G     +  G I +      + R   LY  L  +I  ++P+
Sbjct: 2   LGIDPGIALTGYGIVESKNGSEFKVIDYGRIETLSSLKKSMRFLHLYTELCSIISLYQPD 61

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+E++F NK++   + +G+AR + IL+     + + EY P  +K+++ G G  DK QI
Sbjct: 62  VVAIEELFFNKNSKTAITIGEARGVIILTCIQNNLSIYEYTPLQVKQSITGYGRADKTQI 121

Query: 127 HMMLKMLMPE-SFFKGKDAADALAIAVCHAYHANSGYYK 164
             M+K L+      K  D ADALA+A+CH   ++S  Y+
Sbjct: 122 QKMVKSLLSLPEIPKPDDVADALAVAMCHILSSSSVLYQ 160


>gi|291533990|emb|CBL07103.1| crossover junction endodeoxyribonuclease RuvC [Megamonas
           hypermegale ART12/1]
          Length = 164

 Score =  220 bits (563), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 55/158 (34%), Positives = 92/158 (58%), Gaps = 1/158 (0%)

Query: 8   IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEE 67
           +GIDPG    G+G+VD+ G  L  +  G I++  +     RL +++  LTD+I+ ++P+ 
Sbjct: 4   LGIDPGTAICGYGLVDMQGSRLKAIEYGAILTSPQMRPQDRLLKIHRELTDIIQKYKPDV 63

Query: 68  AAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIH 127
             VEQ+F N++    + +GQAR I +L+ A  +I + E  P  IK++V+G G   K+Q+ 
Sbjct: 64  MGVEQLFFNRNVTTAIPVGQARGIVLLTAAENQIELVERTPLQIKQSVVGFGRASKEQVI 123

Query: 128 MMLKMLMPE-SFFKGKDAADALAIAVCHAYHANSGYYK 164
            M+  L+      K  D ADALA+A+C  +  NS  ++
Sbjct: 124 YMVTKLLHLPEPPKPDDVADALAVAICTTHCMNSLTWR 161


>gi|121595949|ref|YP_987845.1| Holliday junction resolvase [Acidovorax sp. JS42]
 gi|166231573|sp|A1WBZ4|RUVC_ACISJ RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|120608029|gb|ABM43769.1| crossover junction endodeoxyribonuclease RuvC [Acidovorax sp. JS42]
          Length = 186

 Score =  220 bits (562), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 69/169 (40%), Positives = 104/169 (61%), Gaps = 7/169 (4%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQ------SLAFRLCQLYEGLTD 58
           +RI+GIDPGL+ TG+G+VDV G  L +V+SGT+ +  R        L  RL  L++G+++
Sbjct: 1   MRILGIDPGLQTTGFGVVDVDGHRLRYVASGTVRTTGRATGLALGDLPGRLKVLFDGVSE 60

Query: 59  VIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGV 118
           V   ++P  AAVE +FVN +  +TL LGQAR  A+ +   A +PV+EY    +KKAV+G 
Sbjct: 61  VAARYQPSTAAVEIIFVNVNPQSTLLLGQARGAALTALVNANLPVAEYTALQMKKAVVGH 120

Query: 119 GHGDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
           G   K Q+  M++ L+      G DAADAL +A+ HA+ A +   ++  
Sbjct: 121 GRAAKSQVQEMVRRLLELPGLPGTDAADALGLAITHAH-AGAAMARVGE 168


>gi|237741150|ref|ZP_04571631.1| crossover junction endodeoxyribonuclease ruvC [Fusobacterium sp.
           4_1_13]
 gi|256846283|ref|ZP_05551740.1| crossover junction endodeoxyribonuclease RuvC [Fusobacterium sp.
           3_1_36A2]
 gi|294784633|ref|ZP_06749922.1| crossover junction endodeoxyribonuclease RuvC [Fusobacterium sp.
           3_1_27]
 gi|229430682|gb|EEO40894.1| crossover junction endodeoxyribonuclease ruvC [Fusobacterium sp.
           4_1_13]
 gi|256718052|gb|EEU31608.1| crossover junction endodeoxyribonuclease RuvC [Fusobacterium sp.
           3_1_36A2]
 gi|294487849|gb|EFG35208.1| crossover junction endodeoxyribonuclease RuvC [Fusobacterium sp.
           3_1_27]
          Length = 190

 Score =  220 bits (562), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 50/157 (31%), Positives = 81/157 (51%), Gaps = 1/157 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R+IGIDPG    G+GI+D   +    V  G +++    S   RL  +Y  +  ++K ++
Sbjct: 1   MRVIGIDPGTAIVGYGIIDYDKNKYSIVDYGVVLTSKDLSTEERLEIVYSEIDKILKKYK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           PE  A+E +F  K+    + + QAR + +L+     I +S Y P  +K  + G G  +KK
Sbjct: 61  PEFMAIEDLFYFKNNKTVISVAQARGVILLAGKQNNIAMSSYTPLQVKIGITGYGKAEKK 120

Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHANS 160
           Q+  M++  +      K  DAADALAI + H     S
Sbjct: 121 QVQQMVQKFLGLSEIPKPDDAADALAICITHINSLGS 157


>gi|218768423|ref|YP_002342935.1| Holliday junction resolvase [Neisseria meningitidis Z2491]
 gi|20978752|sp|Q9JTU3|RUVC_NEIMA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|319410668|emb|CBY91044.1| crossover junction endodeoxyribonuclease RuvC (Holliday junction
           nuclease RuvC; Holliday junction resolvase RuvC)
           [Neisseria meningitidis WUE 2594]
          Length = 178

 Score =  220 bits (562), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 65/165 (39%), Positives = 102/165 (61%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M  ++RI+GIDPG R TG+G++DV G +  +V+SG I +     LA R+  +   + +V+
Sbjct: 1   MSATVRILGIDPGSRVTGFGVIDVRGRDHFYVASGCIKTPADAPLADRIAVIVRHIGEVV 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             ++P++AAVEQVFVN +  +TL LGQAR  A+ +    ++PVSEY    +K+AV+G G 
Sbjct: 61  TVYKPQQAAVEQVFVNVNPASTLMLGQARGAALAALVSHKLPVSEYTALQVKQAVVGKGK 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
             K+Q+  M+  ++  S     DAAD LA+A+ HA   +    K+
Sbjct: 121 AAKEQVQHMVVQMLGLSGTPQPDAADGLAVALTHALRNHGLAAKL 165


>gi|121635109|ref|YP_975354.1| Holliday junction resolvase [Neisseria meningitidis FAM18]
 gi|120866815|emb|CAM10573.1| crossover junction endodeoxyribonuclease [Neisseria meningitidis
           FAM18]
          Length = 180

 Score =  220 bits (562), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 66/165 (40%), Positives = 102/165 (61%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M  ++RI+GIDPG R TG+GI+DV G +  +V+SG I +     LA R+  +   + +V+
Sbjct: 3   MSATVRILGIDPGSRVTGFGIIDVRGRDHFYVASGCIKTPPDAPLADRIAVIVRHIGEVV 62

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             ++P++AAVEQVFVN +  +TL LGQAR  A+ +    ++PVSEY    +K+AV+G G 
Sbjct: 63  AVYKPQQAAVEQVFVNVNPASTLMLGQARGAALAALVSHKLPVSEYTALQVKQAVVGKGK 122

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
             K+Q+  M+  ++  S     DAAD LA+A+ HA   +    K+
Sbjct: 123 AAKEQVQHMVVQMLGLSGTPQADAADGLAVALTHALRNHGLAAKL 167


>gi|260887322|ref|ZP_05898585.1| crossover junction endodeoxyribonuclease RuvC [Selenomonas
           sputigena ATCC 35185]
 gi|330838925|ref|YP_004413505.1| crossover junction endodeoxyribonuclease RuvC [Selenomonas
           sputigena ATCC 35185]
 gi|260862958|gb|EEX77458.1| crossover junction endodeoxyribonuclease RuvC [Selenomonas
           sputigena ATCC 35185]
 gi|329746689|gb|AEC00046.1| crossover junction endodeoxyribonuclease RuvC [Selenomonas
           sputigena ATCC 35185]
          Length = 164

 Score =  220 bits (562), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 51/158 (32%), Positives = 89/158 (56%), Gaps = 1/158 (0%)

Query: 8   IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEE 67
           +GIDPG    G+G V   G  L   + G + +  +  +  RL +LY+GL  +IK ++P+ 
Sbjct: 4   LGIDPGTAICGFGFVSSEGSRLVPHAYGALTTSPKARMEDRLMKLYDGLDALIKEYKPDV 63

Query: 68  AAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIH 127
             +EQ+F N++    + +GQAR + +L+ A   + ++E+ P  +K+AV G G   K+Q+ 
Sbjct: 64  MGIEQLFFNRNVTTAIPVGQARGVVLLAAAKNGLEIAEHTPLQVKQAVTGYGKARKEQVI 123

Query: 128 MMLKMLMPES-FFKGKDAADALAIAVCHAYHANSGYYK 164
            M+  L+  +   K  D ADALA+A+C  +   S  ++
Sbjct: 124 YMVSKLLHLAKPPKPDDVADALAVAICTTHCMASAAWR 161


>gi|194097787|ref|YP_002000830.1| Holliday junction resolvase [Neisseria gonorrhoeae NCCP11945]
 gi|239998285|ref|ZP_04718209.1| Holliday junction resolvase [Neisseria gonorrhoeae 35/02]
 gi|240013467|ref|ZP_04720380.1| Holliday junction resolvase [Neisseria gonorrhoeae DGI18]
 gi|240015906|ref|ZP_04722446.1| Holliday junction resolvase [Neisseria gonorrhoeae FA6140]
 gi|240080045|ref|ZP_04724588.1| Holliday junction resolvase [Neisseria gonorrhoeae FA19]
 gi|240112255|ref|ZP_04726745.1| Holliday junction resolvase [Neisseria gonorrhoeae MS11]
 gi|240115000|ref|ZP_04729062.1| Holliday junction resolvase [Neisseria gonorrhoeae PID18]
 gi|240117285|ref|ZP_04731347.1| Holliday junction resolvase [Neisseria gonorrhoeae PID1]
 gi|240120539|ref|ZP_04733501.1| Holliday junction resolvase [Neisseria gonorrhoeae PID24-1]
 gi|240122836|ref|ZP_04735792.1| Holliday junction resolvase [Neisseria gonorrhoeae PID332]
 gi|240125032|ref|ZP_04737918.1| Holliday junction resolvase [Neisseria gonorrhoeae SK-92-679]
 gi|240127546|ref|ZP_04740207.1| Holliday junction resolvase [Neisseria gonorrhoeae SK-93-1035]
 gi|260441184|ref|ZP_05795000.1| Holliday junction resolvase [Neisseria gonorrhoeae DGI2]
 gi|268594141|ref|ZP_06128308.1| holliday junction resolvase [Neisseria gonorrhoeae 35/02]
 gi|268596192|ref|ZP_06130359.1| holliday junction resolvase [Neisseria gonorrhoeae FA19]
 gi|291044518|ref|ZP_06570227.1| holliday junction resolvase [Neisseria gonorrhoeae DGI2]
 gi|293397653|ref|ZP_06641859.1| crossover junction endodeoxyribonuclease RuvC [Neisseria
           gonorrhoeae F62]
 gi|59717506|gb|AAW88911.1| putative crossover junction endodeoxyribonuclease [Neisseria
           gonorrhoeae FA 1090]
 gi|193933077|gb|ACF28901.1| Holliday junction resolvase [Neisseria gonorrhoeae NCCP11945]
 gi|268547530|gb|EEZ42948.1| holliday junction resolvase [Neisseria gonorrhoeae 35/02]
 gi|268549980|gb|EEZ44999.1| holliday junction resolvase [Neisseria gonorrhoeae FA19]
 gi|291011412|gb|EFE03408.1| holliday junction resolvase [Neisseria gonorrhoeae DGI2]
 gi|291611599|gb|EFF40668.1| crossover junction endodeoxyribonuclease RuvC [Neisseria
           gonorrhoeae F62]
 gi|317163565|gb|ADV07106.1| Holliday junction resolvase [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 180

 Score =  220 bits (562), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 66/165 (40%), Positives = 103/165 (62%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M  ++RI+GIDPG R TG+GI+DV G +  +V+SG I +   + LA R+  +   + +V+
Sbjct: 3   MSATVRILGIDPGSRVTGFGIIDVRGRDHFYVASGCIKTPADEPLADRIAVIVRHIGEVV 62

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             ++P++AAVEQVFVN +  +TL LGQAR  A+ +    ++PVSEY    +K+AV+G G 
Sbjct: 63  AVYKPQQAAVEQVFVNVNPASTLMLGQARGAALAALVSHKLPVSEYTALQVKQAVVGKGK 122

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
             K+Q+  M+  ++  S     DAAD LA+A+ HA   +    K+
Sbjct: 123 AAKEQVQHMVVQMLGLSGTPQADAADGLAVALTHALRNHGLAAKL 167


>gi|209695354|ref|YP_002263283.1| Holliday junction resolvase [Aliivibrio salmonicida LFI1238]
 gi|226698789|sp|B6EGJ2|RUVC_ALISL RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|208009306|emb|CAQ79572.1| crossover junction endodeoxyribonuclease RuvC [Aliivibrio
           salmonicida LFI1238]
          Length = 173

 Score =  220 bits (562), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 64/154 (41%), Positives = 96/154 (62%), Gaps = 1/154 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G +L ++ SG I    +  L  RL Q+Y G++++I  ++P+
Sbjct: 4   ILGIDPGSRITGYGVIRQNGRHLQYLGSGCIRMSEK-ELPGRLKQIYAGVSEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF++K+A + LKLGQAR  AI++   A +PV EYA   IK+AV G G  DK Q+
Sbjct: 63  VFAIEQVFMSKNADSALKLGQARGSAIVAAVNADLPVYEYAARLIKQAVTGTGAADKAQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
             M+  ++        DAAD L +A+CHA    +
Sbjct: 123 QHMVMTMLKLPARPQADAADGLGVAICHANTNKT 156


>gi|187611526|sp|A1KUM5|RUVC_NEIMF RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|254672932|emb|CBA07309.1| crossover junction endodeoxyribonuclease RuvC [Neisseria
           meningitidis alpha275]
 gi|325132399|gb|EGC55092.1| crossover junction endodeoxyribonuclease RuvC [Neisseria
           meningitidis M6190]
 gi|325136537|gb|EGC59141.1| crossover junction endodeoxyribonuclease RuvC [Neisseria
           meningitidis M0579]
 gi|325138388|gb|EGC60956.1| crossover junction endodeoxyribonuclease RuvC [Neisseria
           meningitidis ES14902]
 gi|325142619|gb|EGC65011.1| crossover junction endodeoxyribonuclease RuvC [Neisseria
           meningitidis 961-5945]
 gi|325198554|gb|ADY94010.1| crossover junction endodeoxyribonuclease RuvC [Neisseria
           meningitidis G2136]
 gi|325204404|gb|ADY99857.1| crossover junction endodeoxyribonuclease RuvC [Neisseria
           meningitidis M01-240355]
          Length = 178

 Score =  220 bits (562), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 66/165 (40%), Positives = 102/165 (61%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M  ++RI+GIDPG R TG+GI+DV G +  +V+SG I +     LA R+  +   + +V+
Sbjct: 1   MSATVRILGIDPGSRVTGFGIIDVRGRDHFYVASGCIKTPPDAPLADRIAVIVRHIGEVV 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             ++P++AAVEQVFVN +  +TL LGQAR  A+ +    ++PVSEY    +K+AV+G G 
Sbjct: 61  AVYKPQQAAVEQVFVNVNPASTLMLGQARGAALAALVSHKLPVSEYTALQVKQAVVGKGK 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
             K+Q+  M+  ++  S     DAAD LA+A+ HA   +    K+
Sbjct: 121 AAKEQVQHMVVQMLGLSGTPQADAADGLAVALTHALRNHGLAAKL 165


>gi|326315582|ref|YP_004233254.1| crossover junction endodeoxyribonuclease RuvC [Acidovorax avenae
           subsp. avenae ATCC 19860]
 gi|323372418|gb|ADX44687.1| crossover junction endodeoxyribonuclease RuvC [Acidovorax avenae
           subsp. avenae ATCC 19860]
          Length = 182

 Score =  220 bits (562), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 69/166 (41%), Positives = 105/166 (63%), Gaps = 3/166 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQ--SLAFRLCQLYEGLTDVIKN 62
           +RI+GIDPGL+ TG+G+VDV G +L +V+SGTI +       L  RL  L++G+T+V   
Sbjct: 1   MRILGIDPGLQTTGFGVVDVDGHHLSYVASGTIRTTGAALGDLPGRLKILFDGITEVAAR 60

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
           ++P+ A VE VFVN +  +TL LGQAR   + +   +++PV+EY    +KKAV+G G   
Sbjct: 61  YQPDAATVEIVFVNVNPQSTLLLGQARGACVTALVASQLPVAEYTALQMKKAVVGHGRAA 120

Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
           K Q+  M++ L+      G DAADAL +A+ HA+ A +   ++A  
Sbjct: 121 KSQVQEMVRRLLQLPGLPGSDAADALGLAITHAH-AGAAMGRLAEA 165


>gi|325199964|gb|ADY95419.1| crossover junction endodeoxyribonuclease RuvC [Neisseria
           meningitidis H44/76]
          Length = 180

 Score =  220 bits (562), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 66/165 (40%), Positives = 102/165 (61%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M  S+RI+GIDPG R TG+G++DV G +  +V+SG I +     LA R+  +   + +V+
Sbjct: 3   MAASVRILGIDPGSRVTGFGVIDVRGRDHFYVASGCIKTPADAPLADRIAVIVRHIGEVV 62

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             ++P++AAVEQVFVN +  +TL LGQAR  A+ +    ++PVSEY    +K+AV+G G 
Sbjct: 63  TVYKPQQAAVEQVFVNVNPASTLMLGQARGAALAALVSHKLPVSEYTALQVKQAVVGKGK 122

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
             K+Q+  M+  ++  S     DAAD LA+A+ HA   +    K+
Sbjct: 123 AAKEQVQHMVVQMLGLSGTPQPDAADGLAVALTHALRNHGLAAKL 167


>gi|161572978|ref|YP_207323.2| Holliday junction resolvase [Neisseria gonorrhoeae FA 1090]
 gi|254493063|ref|ZP_05106234.1| holliday junction resolvase [Neisseria gonorrhoeae 1291]
 gi|268598318|ref|ZP_06132485.1| holliday junction resolvase [Neisseria gonorrhoeae MS11]
 gi|268600670|ref|ZP_06134837.1| holliday junction resolvase [Neisseria gonorrhoeae PID18]
 gi|268602981|ref|ZP_06137148.1| holliday junction resolvase [Neisseria gonorrhoeae PID1]
 gi|268681453|ref|ZP_06148315.1| holliday junction resolvase [Neisseria gonorrhoeae PID332]
 gi|268683622|ref|ZP_06150484.1| holliday junction resolvase [Neisseria gonorrhoeae SK-92-679]
 gi|268685925|ref|ZP_06152787.1| holliday junction resolvase [Neisseria gonorrhoeae SK-93-1035]
 gi|97274826|sp|Q5FA76|RUVC_NEIG1 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|226512103|gb|EEH61448.1| holliday junction resolvase [Neisseria gonorrhoeae 1291]
 gi|268582449|gb|EEZ47125.1| holliday junction resolvase [Neisseria gonorrhoeae MS11]
 gi|268584801|gb|EEZ49477.1| holliday junction resolvase [Neisseria gonorrhoeae PID18]
 gi|268587112|gb|EEZ51788.1| holliday junction resolvase [Neisseria gonorrhoeae PID1]
 gi|268621737|gb|EEZ54137.1| holliday junction resolvase [Neisseria gonorrhoeae PID332]
 gi|268623906|gb|EEZ56306.1| holliday junction resolvase [Neisseria gonorrhoeae SK-92-679]
 gi|268626209|gb|EEZ58609.1| holliday junction resolvase [Neisseria gonorrhoeae SK-93-1035]
          Length = 178

 Score =  220 bits (561), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 66/165 (40%), Positives = 103/165 (62%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M  ++RI+GIDPG R TG+GI+DV G +  +V+SG I +   + LA R+  +   + +V+
Sbjct: 1   MSATVRILGIDPGSRVTGFGIIDVRGRDHFYVASGCIKTPADEPLADRIAVIVRHIGEVV 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             ++P++AAVEQVFVN +  +TL LGQAR  A+ +    ++PVSEY    +K+AV+G G 
Sbjct: 61  AVYKPQQAAVEQVFVNVNPASTLMLGQARGAALAALVSHKLPVSEYTALQVKQAVVGKGK 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
             K+Q+  M+  ++  S     DAAD LA+A+ HA   +    K+
Sbjct: 121 AAKEQVQHMVVQMLGLSGTPQADAADGLAVALTHALRNHGLAAKL 165


>gi|238022887|ref|ZP_04603313.1| hypothetical protein GCWU000324_02808 [Kingella oralis ATCC 51147]
 gi|237865695|gb|EEP66833.1| hypothetical protein GCWU000324_02808 [Kingella oralis ATCC 51147]
          Length = 178

 Score =  220 bits (561), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 69/167 (41%), Positives = 97/167 (58%)

Query: 2   RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
            +  RI+GIDPG R TG+GI+DV G    +V SG I +     LA R+  + E +++++ 
Sbjct: 4   SRPTRILGIDPGSRTTGFGIIDVVGREQIYVVSGCIKTIKNDELAGRIGIIVENISELVA 63

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
            +RP  AAVE+VFVN +  ATL LGQAR  AI +  L  +PV EY    +K+AV+G G  
Sbjct: 64  TYRPTVAAVERVFVNVNPAATLMLGQARGAAIAALVLRGLPVYEYTALQVKQAVVGQGKA 123

Query: 122 DKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
            K+Q+  M+  ++  S     DAAD LAIA+ HA        K+ S 
Sbjct: 124 AKEQVQHMVVQMLKLSGTPQADAADGLAIALTHALRNQGLAAKLGSS 170


>gi|121609894|ref|YP_997701.1| Holliday junction resolvase [Verminephrobacter eiseniae EF01-2]
 gi|166233309|sp|A1WM26|RUVC_VEREI RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|121554534|gb|ABM58683.1| crossover junction endodeoxyribonuclease RuvC [Verminephrobacter
           eiseniae EF01-2]
          Length = 182

 Score =  220 bits (561), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 66/154 (42%), Positives = 98/154 (63%), Gaps = 2/154 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQ--SLAFRLCQLYEGLTDVIKN 62
           +RI+GIDPGL+ TG+G+VD+ G  L +V+SGTI +       L  RL  L++G+T++   
Sbjct: 1   MRILGIDPGLQTTGFGVVDIDGQQLRYVASGTIRTTSLALGDLPGRLKILFDGITELAAR 60

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
           ++P+ AAVE VFVN +  +TL LGQAR   I +   + +PV+EY    +KKAV+G G   
Sbjct: 61  YQPDAAAVEIVFVNVNPQSTLLLGQARGACITALVASHLPVAEYTALQMKKAVVGHGRAA 120

Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
           K Q+  M++ L+      G DAAD L +A+ HA+
Sbjct: 121 KSQVQEMVRRLLHLPALPGTDAADGLGLAITHAH 154


>gi|304387249|ref|ZP_07369445.1| crossover junction endoribonuclease subunit C [Neisseria
           meningitidis ATCC 13091]
 gi|304338716|gb|EFM04830.1| crossover junction endoribonuclease subunit C [Neisseria
           meningitidis ATCC 13091]
          Length = 180

 Score =  220 bits (561), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 66/165 (40%), Positives = 102/165 (61%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M  ++RI+GIDPG R TG+G++DV G N  +V+SG I +     LA R+  +   + +V+
Sbjct: 3   MAATVRILGIDPGSRVTGFGVIDVRGRNHFYVASGCIKTPADAPLADRIAVIVRHIGEVV 62

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             ++P++AAVEQVFVN +  +TL LGQAR  A+ +    ++PVSEY    +K+AV+G G 
Sbjct: 63  AVYKPQQAAVEQVFVNVNPASTLMLGQARGAALAALVSHKLPVSEYTALQVKQAVVGKGK 122

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
             K+Q+  M+  ++  S     DAAD LA+A+ HA   +    K+
Sbjct: 123 AAKEQVQHMVVQMLGLSGTPQADAADGLAVALTHALRNHGLAAKL 167


>gi|254302616|ref|ZP_04969974.1| crossover junction endodeoxyribonuclease [Fusobacterium nucleatum
           subsp. polymorphum ATCC 10953]
 gi|148322808|gb|EDK88058.1| crossover junction endodeoxyribonuclease [Fusobacterium nucleatum
           subsp. polymorphum ATCC 10953]
          Length = 190

 Score =  220 bits (561), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 51/166 (30%), Positives = 83/166 (50%), Gaps = 1/166 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R+IGIDPG    G+GI+D   +N   V  G +++    S   RL  +Y  +  ++K +R
Sbjct: 1   MRVIGIDPGTAIVGYGIIDYDKNNYSIVDYGVVLTSKDLSTEERLEIVYNEIDKILKKYR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           PE  A+E +F  K+    + + QAR + +L      I ++ Y P  +K  + G G  +KK
Sbjct: 61  PEFMAIEDLFYFKNNKTVISVAQARGVILLVGKQNNIAMTSYTPLQVKIGITGYGKAEKK 120

Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHANSGYYKIASQD 169
           Q+  M++  +      K  DAADALAI + H     S      + +
Sbjct: 121 QVQQMVQKFLGLSEIPKPDDAADALAICITHINSLGSKLSFGGANN 166


>gi|15677278|ref|NP_274431.1| Holliday junction resolvase [Neisseria meningitidis MC58]
 gi|20978753|sp|Q9JYV1|RUVC_NEIMB RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|7226658|gb|AAF41780.1| crossover junction endodeoxyribonuclease RuvC [Neisseria
           meningitidis MC58]
 gi|316985809|gb|EFV64752.1| crossover junction endodeoxyribonuclease RuvC [Neisseria
           meningitidis H44/76]
 gi|325134361|gb|EGC57006.1| crossover junction endodeoxyribonuclease RuvC [Neisseria
           meningitidis M13399]
 gi|325140376|gb|EGC62897.1| crossover junction endodeoxyribonuclease RuvC [Neisseria
           meningitidis CU385]
 gi|325144660|gb|EGC66958.1| crossover junction endodeoxyribonuclease RuvC [Neisseria
           meningitidis M01-240013]
 gi|325205826|gb|ADZ01279.1| crossover junction endodeoxyribonuclease RuvC [Neisseria
           meningitidis M04-240196]
          Length = 178

 Score =  220 bits (561), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 66/165 (40%), Positives = 102/165 (61%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M  S+RI+GIDPG R TG+G++DV G +  +V+SG I +     LA R+  +   + +V+
Sbjct: 1   MAASVRILGIDPGSRVTGFGVIDVRGRDHFYVASGCIKTPADAPLADRIAVIVRHIGEVV 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             ++P++AAVEQVFVN +  +TL LGQAR  A+ +    ++PVSEY    +K+AV+G G 
Sbjct: 61  TVYKPQQAAVEQVFVNVNPASTLMLGQARGAALAALVSHKLPVSEYTALQVKQAVVGKGK 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
             K+Q+  M+  ++  S     DAAD LA+A+ HA   +    K+
Sbjct: 121 AAKEQVQHMVVQMLGLSGTPQPDAADGLAVALTHALRNHGLAAKL 165


>gi|255658186|ref|ZP_05403595.1| crossover junction endodeoxyribonuclease RuvC [Mitsuokella
           multacida DSM 20544]
 gi|260849494|gb|EEX69501.1| crossover junction endodeoxyribonuclease RuvC [Mitsuokella
           multacida DSM 20544]
          Length = 164

 Score =  220 bits (561), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 54/158 (34%), Positives = 88/158 (55%), Gaps = 1/158 (0%)

Query: 8   IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEE 67
           +GIDPG    G+G V+  G  L   + G+I +  +  +  RL ++Y+ L  +IK ++P+ 
Sbjct: 4   LGIDPGTAICGFGFVESRGSRLIPRAYGSIFTSPKMKMEDRLMKIYDELDALIKKYKPDV 63

Query: 68  AAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIH 127
             VE++F N++    + +GQAR I +L+ A   + + E  P  IK+ V G G  DKKQ+ 
Sbjct: 64  MGVEKLFFNRNVTTAIPVGQARGIVLLTAAKNGLRLVERTPMQIKQDVTGYGKADKKQVI 123

Query: 128 MMLKMLMPE-SFFKGKDAADALAIAVCHAYHANSGYYK 164
            M+  ++      K  D ADALAIA+C  +  NS  ++
Sbjct: 124 YMVTKILNLPEPPKPDDTADALAIAICTTHCLNSISWR 161


>gi|210622014|ref|ZP_03292957.1| hypothetical protein CLOHIR_00903 [Clostridium hiranonis DSM 13275]
 gi|210154459|gb|EEA85465.1| hypothetical protein CLOHIR_00903 [Clostridium hiranonis DSM 13275]
          Length = 167

 Score =  220 bits (561), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 52/153 (33%), Positives = 87/153 (56%), Gaps = 1/153 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + I+GIDPG+   G+G+++  G+N   +  G I +     L  RL  +Y+G+  +IK++ 
Sbjct: 1   MIILGIDPGIAIVGYGVIEYKGNNFRVIDYGAITTPAHTDLTTRLEMVYKGVDTIIKSYD 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
            +E  +E++F NK+    + + QAR + +L+ A   +P+ EY P  IK+ V G G  DK 
Sbjct: 61  IDEVGIEELFFNKNVKTAITVAQARGVTLLACAHNNVPIYEYTPPQIKQGVCGYGRADKV 120

Query: 125 QIHMMLKMLMPESF-FKGKDAADALAIAVCHAY 156
           ++   +   +      K  D ADALAIA+CHA+
Sbjct: 121 RVQKSVTSFLKLKKVPKPDDVADALAIAICHAH 153


>gi|161870284|ref|YP_001599454.1| Holliday junction resolvase [Neisseria meningitidis 053442]
 gi|161595837|gb|ABX73497.1| crossover junction endodeoxyribonuclease [Neisseria meningitidis
           053442]
          Length = 180

 Score =  220 bits (561), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 65/165 (39%), Positives = 102/165 (61%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M  S+RI+GIDPG R TG+G++DV G +  +V+SG I +     LA R+  +   + +V+
Sbjct: 3   MAASVRILGIDPGSRVTGFGVIDVRGRDHFYVASGCIKTPADAPLADRIAVIVRHIGEVV 62

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             ++P++AAVEQVFVN +  +TL LGQAR  A+ +    ++PVSEY    +K+AV+G G 
Sbjct: 63  AVYKPQQAAVEQVFVNVNPASTLMLGQARGAALAALVSHKLPVSEYTALQVKQAVVGKGK 122

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
             K+Q+  M+  ++  S     DAAD LA+A+ HA   +    ++
Sbjct: 123 AAKEQVQHMVVQMLGLSGTPQADAADGLAVALTHALRNHGLASRL 167


>gi|254805201|ref|YP_003083422.1| crossover junction endodeoxyribonuclease RuvC [Neisseria
           meningitidis alpha14]
 gi|254668743|emb|CBA06590.1| crossover junction endodeoxyribonuclease RuvC [Neisseria
           meningitidis alpha14]
          Length = 178

 Score =  219 bits (560), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 65/165 (39%), Positives = 102/165 (61%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M  ++RI+GIDPG R TG+G++DV G +  +V+SG I +     LA R+  +   + +V+
Sbjct: 1   MSATVRILGIDPGSRVTGFGVIDVRGRDHFYVASGCIKTPADAPLADRIAVIVRHIGEVV 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             ++P++AAVEQVFVN +  +TL LGQAR  A+ +    ++PVSEY    +K+AV+G G 
Sbjct: 61  AVYKPQQAAVEQVFVNVNPASTLMLGQARGAALAALVSHKLPVSEYTALQVKQAVVGKGK 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
             K+Q+  M+  ++  S     DAAD LA+A+ HA   +    K+
Sbjct: 121 AAKEQVQHMVVQMLGLSGTPQADAADGLAVALTHALRNHGLAAKL 165


>gi|187611525|sp|A9M0D4|RUVC_NEIM0 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
          Length = 178

 Score =  219 bits (560), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 65/165 (39%), Positives = 102/165 (61%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M  S+RI+GIDPG R TG+G++DV G +  +V+SG I +     LA R+  +   + +V+
Sbjct: 1   MAASVRILGIDPGSRVTGFGVIDVRGRDHFYVASGCIKTPADAPLADRIAVIVRHIGEVV 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             ++P++AAVEQVFVN +  +TL LGQAR  A+ +    ++PVSEY    +K+AV+G G 
Sbjct: 61  AVYKPQQAAVEQVFVNVNPASTLMLGQARGAALAALVSHKLPVSEYTALQVKQAVVGKGK 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
             K+Q+  M+  ++  S     DAAD LA+A+ HA   +    ++
Sbjct: 121 AAKEQVQHMVVQMLGLSGTPQADAADGLAVALTHALRNHGLASRL 165


>gi|33594300|ref|NP_881944.1| Holliday junction resolvase [Bordetella pertussis Tohama I]
 gi|44888432|sp|Q7VTU0|RUVC_BORPE RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|33564375|emb|CAE43680.1| crossover junction endodeoxyribonuclease [Bordetella pertussis
           Tohama I]
 gi|332383711|gb|AEE68558.1| Holliday junction resolvase [Bordetella pertussis CS]
          Length = 182

 Score =  219 bits (560), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 68/152 (44%), Positives = 99/152 (65%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPGLRRTG+G++D  G  L +V+SGTIV     +L  RL  + + L +V +  R
Sbjct: 1   MRVLGIDPGLRRTGFGVIDAEGMRLRYVASGTIVVPPALALPERLKVILDNLREVARETR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ AA+E VF+N +  +TL LGQAR  A+ + A + + V EY    IKKAV+G G   K+
Sbjct: 61  PDVAALEIVFLNTNPASTLLLGQARGAALCALADSALDVHEYTALQIKKAVMGTGRAAKE 120

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
           Q+ MM++ L+        D+ADALA A+CHA+
Sbjct: 121 QVQMMVQRLLSLDGTPAPDSADALACAICHAH 152


>gi|121602663|ref|YP_988489.1| Holliday junction resolvase [Bartonella bacilliformis KC583]
 gi|166231580|sp|A1UR86|RUVC_BARBK RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|120614840|gb|ABM45441.1| crossover junction endodeoxyribonuclease RuvC [Bartonella
           bacilliformis KC583]
          Length = 167

 Score =  219 bits (560), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 104/165 (63%), Positives = 132/165 (80%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M + IRIIGIDPGLRRTGWGI+D  G+++ FV+SGT+ S  + +LA RL QL++GL++V+
Sbjct: 1   MVEKIRIIGIDPGLRRTGWGIIDFLGNHMHFVASGTLHSDAQLNLASRLHQLHKGLSEVV 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             + P EAAVE VFVNKDA ATLKLGQARAIA+L PA A +PV EYAPNTIKK+VIGVGH
Sbjct: 61  HQFMPHEAAVEHVFVNKDATATLKLGQARAIALLVPAQAGLPVFEYAPNTIKKSVIGVGH 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
           G K+QIHMM+K L+P + F G DAADALA+ +CH+ H  +  ++I
Sbjct: 121 GAKEQIHMMVKRLLPRAEFDGHDAADALALVICHSAHRTNFAHRI 165


>gi|319943010|ref|ZP_08017293.1| crossover junction endoribonuclease subunit C [Lautropia mirabilis
           ATCC 51599]
 gi|319743552|gb|EFV95956.1| crossover junction endoribonuclease subunit C [Lautropia mirabilis
           ATCC 51599]
          Length = 170

 Score =  219 bits (560), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 68/152 (44%), Positives = 97/152 (63%), Gaps = 1/152 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGLR TG+G++D  GD + +V+SG I S   Q L  RL +L++G+ +++K +R
Sbjct: 1   MRILGIDPGLRTTGFGLIDTRGDAMRYVASGVIRSGEGQ-LPERLGRLHQGIIELVKEYR 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P  A  E VFVN +  +TL LGQAR  AI +     +PV EY    IK+AV+G G   K+
Sbjct: 60  PTVAVCEIVFVNVNPKSTLLLGQARGAAIGAMVSTGLPVHEYTALQIKQAVVGYGRATKE 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
           Q+  M+K ++        DAADALA A+CH +
Sbjct: 120 QVQEMVKRILTLPGLPSTDAADALACAICHNH 151


>gi|313667871|ref|YP_004048155.1| crossover junction endodeoxyribonuclease [Neisseria lactamica
           ST-640]
 gi|313005333|emb|CBN86766.1| crossover junction endodeoxyribonuclease [Neisseria lactamica
           020-06]
          Length = 178

 Score =  219 bits (559), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 66/165 (40%), Positives = 102/165 (61%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M  ++RI+GIDPG R TG+GI+DV G +  +V+SG I +     LA R+  +   + +V+
Sbjct: 1   MSATVRILGIDPGSRVTGFGIIDVRGRDHFYVASGCIKTPADAPLADRIAVIVRHIGEVV 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             ++P++AAVEQVFVN +  +TL LGQAR  A+ +    ++PVSEY    +K+AV+G G 
Sbjct: 61  AVYKPQQAAVEQVFVNVNPASTLMLGQARGAALAALVSHKLPVSEYTALQVKQAVVGKGK 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
             K+Q+  M+  ++  S     DAAD LA+A+ HA   +    K+
Sbjct: 121 AAKEQVQHMVVQMLGLSGTPQADAADGLAVALTHALRNHGLAAKL 165


>gi|282164970|ref|YP_003357355.1| crossover junction endodeoxyribonuclease RuvC [Methanocella
           paludicola SANAE]
 gi|282157284|dbj|BAI62372.1| crossover junction endodeoxyribonuclease RuvC [Methanocella
           paludicola SANAE]
          Length = 166

 Score =  219 bits (559), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 61/154 (39%), Positives = 90/154 (58%), Gaps = 1/154 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPG+  TG+GIV+  G  +     G I +     +  RL  LY+ + ++++ +R
Sbjct: 1   MRILGIDPGIALTGFGIVEKEGVRIKAGRYGHISTESGTPVPDRLKILYDDMVNIVQEYR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           PE   VE++F NK+A   +   QAR + ILS     + V EY P  +K+AVIG G   K+
Sbjct: 61  PEVMVVEELFFNKNAKTAIIAAQARGVIILSAVNNGVKVEEYTPLQVKQAVIGYGRASKQ 120

Query: 125 QIHMMLKMLM-PESFFKGKDAADALAIAVCHAYH 157
           Q+  M+K L+  +   K  D ADALAIA+CHA  
Sbjct: 121 QVQFMVKELLRLKEIPKPDDTADALAIAICHANS 154


>gi|120609527|ref|YP_969205.1| Holliday junction resolvase [Acidovorax citrulli AAC00-1]
 gi|166231572|sp|A1TKE3|RUVC_ACIAC RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|120587991|gb|ABM31431.1| crossover junction endodeoxyribonuclease RuvC [Acidovorax citrulli
           AAC00-1]
          Length = 182

 Score =  219 bits (559), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 69/166 (41%), Positives = 104/166 (62%), Gaps = 3/166 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQ--SLAFRLCQLYEGLTDVIKN 62
           +RI+GIDPGL+ TG+G+VDV G +L +V+SGTI +       L  RL  L++G+T+V   
Sbjct: 1   MRILGIDPGLQTTGFGVVDVDGHHLSYVASGTIRTTGAALGDLPGRLKILFDGITEVAAR 60

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
           ++P+ A VE VFVN +  +TL LGQAR   + +   +R+PV+EY    +KKAV+G G   
Sbjct: 61  YQPDVATVEIVFVNVNPQSTLLLGQARGACVTALVASRLPVAEYTALQMKKAVVGHGRAA 120

Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
           K Q+  M++ L+      G DAADAL +A+ HA+ A +   ++   
Sbjct: 121 KSQVQEMVRRLLQLPGLPGTDAADALGLAITHAH-AGAAMARLGEA 165


>gi|261392322|emb|CAX49849.1| crossover junction endodeoxyribonuclease RuvC (Holliday junction
           nuclease RuvC; Holliday junction resolvase RuvC)
           [Neisseria meningitidis 8013]
          Length = 178

 Score =  219 bits (558), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 66/165 (40%), Positives = 102/165 (61%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M  S+RI+GIDPG R TG+G++DV G +  +V+SG I +     LA R+  +   + +V+
Sbjct: 1   MAASVRILGIDPGSRVTGFGVIDVRGRDHFYVASGCIKTPADAPLADRIAVIVRHIGEVV 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             ++P++AAVEQVFVN +  +TL LGQAR  A+ +    ++PVSEY    +K+AV+G G 
Sbjct: 61  AVYKPQQAAVEQVFVNVNPASTLMLGQARGAALAALVSHKLPVSEYTALQVKQAVVGKGK 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
             K+Q+  M+  ++  S     DAAD LA+A+ HA   +    K+
Sbjct: 121 AAKEQVQHMVVQMLGLSGTPQADAADGLAVALTHALRNHGLAAKL 165


>gi|149910566|ref|ZP_01899205.1| Holliday junction resolvase [Moritella sp. PE36]
 gi|149806409|gb|EDM66382.1| Holliday junction resolvase [Moritella sp. PE36]
          Length = 173

 Score =  219 bits (558), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 59/154 (38%), Positives = 92/154 (59%), Gaps = 1/154 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++        ++ SG I +    +L  RL Q++ G+ ++I  ++P+
Sbjct: 4   ILGIDPGSRITGYGVIQHIHGKFQYLGSGCIRT-SGDTLPERLKQIHAGVCEIIIQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           + A+E VF+ K+A + LKLGQAR  AI++     + V EY    IK+AV+G G  DK+Q+
Sbjct: 63  KFAIEDVFMGKNAASALKLGQARGAAIVAAVSNDLEVGEYTARQIKQAVVGNGGADKEQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
             M+  L+        DAAD LA+A+CHA    +
Sbjct: 123 QQMVVNLLKLPGTPQADAADGLAVALCHAQSLRT 156


>gi|124265675|ref|YP_001019679.1| Holliday junction resolvase [Methylibium petroleiphilum PM1]
 gi|187611448|sp|A2SD05|RUVC_METPP RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|124258450|gb|ABM93444.1| putative holliday junction endodeoxyribonuclease protein
           [Methylibium petroleiphilum PM1]
          Length = 184

 Score =  219 bits (558), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 65/155 (41%), Positives = 98/155 (63%), Gaps = 2/155 (1%)

Query: 4   SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSC--VRQSLAFRLCQLYEGLTDVIK 61
           + RI+GIDPGLR TG+G+V+  G  L +++SGT+ +       L  RL  ++EG+ +V  
Sbjct: 2   ATRILGIDPGLRTTGFGVVECEGSRLHYIASGTVRTDALPNGDLPGRLKIIFEGVREVAA 61

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
            ++P+ AAVE VFVN +  +TL LGQAR  A+ +     + V+EY    +KKA++G GH 
Sbjct: 62  RYQPDCAAVEIVFVNVNPQSTLLLGQARGAALAALVSGDLAVAEYTALQMKKAIVGHGHA 121

Query: 122 DKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
            K+Q+  M+  L+       +DAADAL +AVCHA+
Sbjct: 122 RKEQVQAMVARLLSLPGEPSRDAADALGLAVCHAH 156


>gi|83590538|ref|YP_430547.1| crossover junction endodeoxyribonuclease RuvC [Moorella
           thermoacetica ATCC 39073]
 gi|123766740|sp|Q2RHT5|RUVC_MOOTA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|83573452|gb|ABC20004.1| crossover junction endodeoxyribonuclease RuvC [Moorella
           thermoacetica ATCC 39073]
          Length = 167

 Score =  219 bits (558), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 55/152 (36%), Positives = 88/152 (57%), Gaps = 1/152 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + I+GIDPG    G+G+V+        +    I +   +    RL  +Y G+ ++I+  +
Sbjct: 1   MLILGIDPGTAIVGYGLVEARAGQTRALVYDCIRTPAGEDPCRRLATIYAGIRELIERLQ 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           PE  AVE++F NK++   L +GQAR + +L+ A   +PV+EY P  +K+AV G G   K+
Sbjct: 61  PETMAVEELFFNKNSKTALAVGQARGVILLAAAHTGLPVAEYTPLEVKQAVAGFGRAPKE 120

Query: 125 QIHMMLKMLMPESF-FKGKDAADALAIAVCHA 155
           Q+  M++ L+      +  D ADALA+AVCHA
Sbjct: 121 QVQRMVQALLGLEEKPRPDDVADALAVAVCHA 152


>gi|304312894|ref|YP_003812492.1| Holliday junction resolvasome endonuclease subunit [gamma
           proteobacterium HdN1]
 gi|301798627|emb|CBL46859.1| Holliday junction resolvasome endonuclease subunit [gamma
           proteobacterium HdN1]
          Length = 179

 Score =  219 bits (558), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 60/154 (38%), Positives = 98/154 (63%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+G+DPG R TG+G++   G+ + FV  G I +  ++++  RL Q+Y+G+  VI+ +RPE
Sbjct: 4   ILGVDPGSRVTGYGVIKKEGNQIRFVDCGCIYTNEKEAIPVRLQQIYQGIVAVIREYRPE 63

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           +A++EQVF+  +A + LKLGQAR  A+++     + V EY+    K AV+G G  +K Q+
Sbjct: 64  QASIEQVFMANNADSALKLGQARGSAVVACMNESVEVHEYSARQAKLAVVGTGAAEKAQV 123

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
             M+K ++        DAADAL +A+CHA   ++
Sbjct: 124 QHMIKRILNLPEEPSTDAADALGLAICHANTYST 157


>gi|261378951|ref|ZP_05983524.1| crossover junction endodeoxyribonuclease RuvC [Neisseria cinerea
           ATCC 14685]
 gi|269144652|gb|EEZ71070.1| crossover junction endodeoxyribonuclease RuvC [Neisseria cinerea
           ATCC 14685]
          Length = 178

 Score =  218 bits (557), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 65/166 (39%), Positives = 103/166 (62%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M  ++RI+GIDPG R TG+G++DV G +  +V+SG I +    +LA R+  +   + +V+
Sbjct: 1   MTATVRILGIDPGSRVTGFGVIDVRGRDHFYVASGCIKTPANAALADRIAVIVRHIGEVV 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             ++P++AAVEQVFVN +  +TL LGQAR  A+ +     +PVSEY    +K+AV+G G 
Sbjct: 61  TVYKPQQAAVEQVFVNVNPASTLMLGQARGAALAALVSHGLPVSEYTALQVKQAVVGKGK 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
             K+Q+  M+  ++  S     DAAD LA+A+ HA   +    K++
Sbjct: 121 AAKEQVQHMVVQMLGLSGTPQSDAADGLAVALTHALRNHGLASKLS 166


>gi|269215241|ref|ZP_05987996.2| crossover junction endodeoxyribonuclease RuvC [Neisseria lactamica
           ATCC 23970]
 gi|269207977|gb|EEZ74432.1| crossover junction endodeoxyribonuclease RuvC [Neisseria lactamica
           ATCC 23970]
          Length = 178

 Score =  218 bits (557), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 65/165 (39%), Positives = 102/165 (61%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M  ++RI+GIDPG R TG+G++DV G +  +V+SG I +     LA R+  +   + +V+
Sbjct: 1   MAATVRILGIDPGSRVTGFGVIDVRGRDHFYVASGCIKTPADAPLADRIAVIVRHIGEVV 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             ++P++AAVEQVFVN +  +TL LGQAR  A+ +    ++PVSEY    +K+AV+G G 
Sbjct: 61  AVYKPQQAAVEQVFVNVNPASTLMLGQARGAALAALVSHKLPVSEYTALQVKQAVVGKGK 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
             K+Q+  M+  ++  S     DAAD LA+A+ HA   +    K+
Sbjct: 121 AAKEQVQHMVVQMLGLSGTPQADAADGLAVALTHALRNHGLAAKL 165


>gi|116748438|ref|YP_845125.1| crossover junction endodeoxyribonuclease RuvC [Syntrophobacter
           fumaroxidans MPOB]
 gi|116697502|gb|ABK16690.1| Holliday junction endonuclease RuvC [Syntrophobacter fumaroxidans
           MPOB]
          Length = 183

 Score =  218 bits (557), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 68/156 (43%), Positives = 91/156 (58%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           IR IG+DPG R TG+GIV+  G  L  V++G I       L  RL  +YE LT VI    
Sbjct: 18  IRTIGVDPGSRFTGYGIVEGEGTRLLHVANGVIRLSGELPLTQRLKLIYEQLTRVIAEVG 77

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           PE  A+E +F  K+  + L+LGQAR  AIL+   A +P+ EY+   +KKAV+G G   K 
Sbjct: 78  PECMAIEDIFFAKNVKSALRLGQARGAAILAGVNAGLPIYEYSALEVKKAVVGYGKAGKD 137

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           Q+  M++ L   S     +AADALA+AVCH   + S
Sbjct: 138 QVGEMVRCLFRLSQPIDPNAADALAVAVCHVNTSGS 173


>gi|291557650|emb|CBL34767.1| crossover junction endodeoxyribonuclease RuvC [Eubacterium siraeum
           V10Sc8a]
          Length = 167

 Score =  218 bits (557), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 54/166 (32%), Positives = 88/166 (53%), Gaps = 1/166 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RIIGIDPG    G+G+VD           G I +        RLC++YE    ++ +W+
Sbjct: 1   MRIIGIDPGYAIVGFGVVDYIDGKFSVKDFGAITTDKDTPFPKRLCEIYEDYCQILDSWK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  ++E+++   +    + + QAR I I++ A   I ++EY P  +K+AV+G G   KK
Sbjct: 61  PDALSIERLYFTNNQKTGIDVAQARGIIIMAAAQRGIEINEYTPLQVKQAVVGYGQAVKK 120

Query: 125 QIHMMLKMLMPES-FFKGKDAADALAIAVCHAYHANSGYYKIASQD 169
           Q+  M K ++      K  D ADALA+ +CHA  + S    I + +
Sbjct: 121 QVQEMTKNILKLPFVPKPDDTADALAMTICHAQTSGSLLRNIKASN 166


>gi|332285257|ref|YP_004417168.1| crossover junction endodeoxyribonuclease [Pusillimonas sp. T7-7]
 gi|330429210|gb|AEC20544.1| crossover junction endodeoxyribonuclease [Pusillimonas sp. T7-7]
          Length = 182

 Score =  218 bits (557), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 70/152 (46%), Positives = 105/152 (69%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGLRRTG+G++DV G  L +V+SGTIV    Q+LA RL  + + + +V+++ R
Sbjct: 1   MRILGIDPGLRRTGFGVIDVQGTRLVYVTSGTIVVPSDQALAGRLKVILDNIREVVQSTR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P  +A+E+VFVN +  +TL LGQAR  A+ + A + + V EY    IKK+V+G GH  K+
Sbjct: 61  PTVSALEKVFVNTNPASTLLLGQARGAAMCALADSLLDVHEYTALQIKKSVVGNGHAAKE 120

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
           Q+  M++ L+  +     D+ADALA A+CHA+
Sbjct: 121 QVQKMVQHLLGLNGVPAADSADALACAICHAH 152


>gi|53804472|ref|YP_113685.1| crossover junction endodeoxyribonuclease RuvC [Methylococcus
           capsulatus str. Bath]
 gi|81682300|sp|Q609L2|RUVC_METCA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|53758233|gb|AAU92524.1| crossover junction endodeoxyribonuclease RuvC [Methylococcus
           capsulatus str. Bath]
          Length = 165

 Score =  218 bits (557), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 64/155 (41%), Positives = 98/155 (63%), Gaps = 2/155 (1%)

Query: 6   RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           R++GIDPG R TG+GI+D  G     V++G I +        RL +++EG++ +++ +RP
Sbjct: 3   RVLGIDPGSRVTGYGILDWTG-KPVLVAAGCIRTETD-DFPERLRRIFEGISRIVEEFRP 60

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
           EE AVEQVF++K+A + LKLGQAR  AI +     +PV EYA   +K A++G G  DK Q
Sbjct: 61  EEMAVEQVFMHKNADSALKLGQARGAAICAGVAHGLPVHEYAARQVKLALVGKGSADKAQ 120

Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           +  M+  L+ ++     DA+DAL +A CH +H  +
Sbjct: 121 VQHMVCFLLGQAGPLALDASDALGVAFCHLHHRQT 155


>gi|312134957|ref|YP_004002295.1| crossover junction endodeoxyribonuclease ruvc [Caldicellulosiruptor
           owensensis OL]
 gi|311775008|gb|ADQ04495.1| crossover junction endodeoxyribonuclease RuvC [Caldicellulosiruptor
           owensensis OL]
          Length = 164

 Score =  218 bits (557), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 55/159 (34%), Positives = 88/159 (55%), Gaps = 2/159 (1%)

Query: 8   IGIDPGLRRTGWGIVD-VAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           +GIDPG+  TG+GI++   G     +  G I +      + R   L+  L  +I  ++P+
Sbjct: 2   LGIDPGIALTGYGIIESKNGSEFKVIDYGKIETSNCLKKSMRFLHLHTELCSIISLYQPD 61

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+E++F NK++   + +G+AR + IL+     + V EY P  IK+++ G G  DK QI
Sbjct: 62  VVAIEELFFNKNSKTAITIGEARGVIILTCIQNSLSVYEYTPLQIKQSITGYGRADKVQI 121

Query: 127 HMMLKMLMPE-SFFKGKDAADALAIAVCHAYHANSGYYK 164
             M+K L+      K  D ADALA+AVCH   ++S  Y+
Sbjct: 122 QKMVKSLLGLPEIPKPDDVADALAVAVCHILSSSSVLYQ 160


>gi|325201882|gb|ADY97336.1| crossover junction endodeoxyribonuclease RuvC [Neisseria
           meningitidis M01-240149]
 gi|325208365|gb|ADZ03817.1| crossover junction endodeoxyribonuclease RuvC [Neisseria
           meningitidis NZ-05/33]
          Length = 178

 Score =  218 bits (557), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 67/165 (40%), Positives = 103/165 (62%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M  ++RI+GIDPG R TG+GI+DV G +  +V+SG I +    SLA R+  +   + +V+
Sbjct: 1   MSATVRILGIDPGSRVTGFGIIDVRGRDHFYVASGCIKTPADASLADRIAVIVRHIGEVV 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             ++P++AAVEQVFVN +  +TL LGQAR  A+ +    ++PVSEY    +K+AV+G G 
Sbjct: 61  AVYKPQQAAVEQVFVNVNPASTLMLGQARGAALAALVSHKLPVSEYTALQVKQAVVGKGK 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
             K+Q+  M+  ++  S     DAAD LA+A+ HA   +    K+
Sbjct: 121 AAKEQVQHMVVQMLGLSGTPQADAADGLAVALTHALRNHGLAAKL 165


>gi|254669915|emb|CBA04466.1| crossover junction endodeoxyribonuclease [Neisseria meningitidis
           alpha153]
          Length = 178

 Score =  218 bits (557), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 67/165 (40%), Positives = 102/165 (61%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M  S+RI+GIDPG R TG+GI+DV G +  +V+SG I +     LA R+  +   + +V+
Sbjct: 1   MAASVRILGIDPGSRVTGFGIIDVRGRDHFYVASGCIKTPADAPLADRIAVIVRHIGEVV 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             ++P++AAVEQVFVN +  +TL LGQAR  A+ +    ++PVSEY    +K+AV+G G 
Sbjct: 61  AVYKPQQAAVEQVFVNVNPASTLMLGQARGAALAALVSHKLPVSEYTALQVKQAVVGKGK 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
             K+Q+  M+  ++  S     DAAD LA+A+ HA   +    K+
Sbjct: 121 AAKEQVQHMVVQMLGLSGTPQADAADGLAVALTHALRNHGLAAKL 165


>gi|296314361|ref|ZP_06864302.1| crossover junction endodeoxyribonuclease RuvC [Neisseria
           polysaccharea ATCC 43768]
 gi|296838917|gb|EFH22855.1| crossover junction endodeoxyribonuclease RuvC [Neisseria
           polysaccharea ATCC 43768]
          Length = 178

 Score =  218 bits (557), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 67/165 (40%), Positives = 102/165 (61%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M  S+RI+GIDPG R TG+GI+DV G +  +V+SG I +     LA R+  +   + +V+
Sbjct: 1   MAASVRILGIDPGSRVTGFGIIDVRGRDHFYVASGCIKTPTDAPLADRIAVIVRHIGEVV 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             ++P++AAVEQVFVN +  +TL LGQAR  A+ +    ++PVSEY    +K+AV+G G 
Sbjct: 61  AVYKPQQAAVEQVFVNVNPASTLMLGQARGAALAALVSHKLPVSEYTALQVKQAVVGKGK 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
             K+Q+  M+  ++  S     DAAD LA+A+ HA   +    K+
Sbjct: 121 AAKEQVQHMVVQMLGLSGTPQADAADGLAVALTHALRNHGLAAKL 165


>gi|290967869|ref|ZP_06559419.1| crossover junction endodeoxyribonuclease RuvC [Megasphaera
           genomosp. type_1 str. 28L]
 gi|290782008|gb|EFD94586.1| crossover junction endodeoxyribonuclease RuvC [Megasphaera
           genomosp. type_1 str. 28L]
          Length = 166

 Score =  218 bits (557), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 57/161 (35%), Positives = 89/161 (55%), Gaps = 1/161 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R +GIDPG    G+G+VD  G  L  V+ GTI +    + A RL  L++GL ++   ++
Sbjct: 1   MRALGIDPGTAICGFGVVDAQGSRLHPVTYGTIRTSPEDTDAQRLVMLFKGLKELYATYQ 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+   VEQ+F N++    + +GQAR I +L+   A IP+ E+ P  +K+ V G G   K+
Sbjct: 61  PDVVGVEQLFFNRNVTTAITVGQARGIILLTAEQAGIPILEFTPLQVKQGVTGYGRATKE 120

Query: 125 QIHMMLKMLMP-ESFFKGKDAADALAIAVCHAYHANSGYYK 164
           Q+  M   ++      K  DAAD LA+A+   Y  +S   K
Sbjct: 121 QVTDMTMRILGIREKIKPDDAADGLAMAIYAVYSQHSQRLK 161


>gi|157363107|ref|YP_001469874.1| crossover junction endodeoxyribonuclease RuvC [Thermotoga lettingae
           TMO]
 gi|167012683|sp|A8F3S6|RUVC_THELT RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|157313711|gb|ABV32810.1| crossover junction endodeoxyribonuclease RuvC [Thermotoga lettingae
           TMO]
          Length = 162

 Score =  218 bits (556), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 65/152 (42%), Positives = 96/152 (63%), Gaps = 1/152 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + I G+DPG    G+G++ V+G++   VS GTI +  +Q++A RL  LYE L++VI N++
Sbjct: 1   MIIFGVDPGFGILGYGVLSVSGNSFQHVSHGTIQTEKQQNIALRLKVLYEELSNVIDNFK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P E A+E++F +++    + +G+AR I +L  A   IPV EY P+ IKKAV G G   KK
Sbjct: 61  PSEIAMEKLFFSRNITTAISVGEARGIVLLLAAQRNIPVFEYTPHEIKKAVTGSGKASKK 120

Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHA 155
            +  M+K+L+      K  DAAD LAIA CH 
Sbjct: 121 DVQQMIKILLNLKELPKPDDAADGLAIAWCHC 152


>gi|167770541|ref|ZP_02442594.1| hypothetical protein ANACOL_01887 [Anaerotruncus colihominis DSM
           17241]
 gi|167667136|gb|EDS11266.1| hypothetical protein ANACOL_01887 [Anaerotruncus colihominis DSM
           17241]
          Length = 163

 Score =  218 bits (556), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 51/162 (31%), Positives = 90/162 (55%), Gaps = 1/162 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + I+GIDPG    G+G+V+        V  G I +  +   + RL  +Y+ +T ++   +
Sbjct: 1   MIILGIDPGYATVGYGVVNYDRGRFAPVRFGAITTPPKTDFSARLEMIYDDMTVLLDKSQ 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  ++EQ+F + +    + + QAR + +LS     +PV EY P  +K++V+G G  +KK
Sbjct: 61  PQALSIEQLFFSNNKTTAIDVAQARGVILLSARKHGVPVFEYTPMQVKQSVVGYGLAEKK 120

Query: 125 QIHMMLKMLMPESF-FKGKDAADALAIAVCHAYHANSGYYKI 165
           Q+  M +ML+      +  D ADALA+A+CH + A S   ++
Sbjct: 121 QVMEMTRMLLGLEAVPRPDDTADALALAICHGHSAGSLLSRM 162


>gi|86146481|ref|ZP_01064804.1| Holliday junction resolvase [Vibrio sp. MED222]
 gi|218709099|ref|YP_002416720.1| Holliday junction resolvase [Vibrio splendidus LGP32]
 gi|254767488|sp|B7VMI1|RUVC_VIBSL RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|85835744|gb|EAQ53879.1| Holliday junction resolvase [Vibrio sp. MED222]
 gi|218322118|emb|CAV18231.1| Crossover junction endodeoxyribonuclease ruvC [Vibrio splendidus
           LGP32]
          Length = 173

 Score =  218 bits (556), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 63/154 (40%), Positives = 96/154 (62%), Gaps = 1/154 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G +L ++ SG I +  +  L  RL Q+Y G++++I  ++P+
Sbjct: 4   ILGIDPGSRITGYGVIRQNGRHLYYLGSGCIRTSEK-ELPGRLKQIYAGVSEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF++K+A + LKLGQAR  AI++   A +PV EYA   IK+AV G G  DK  +
Sbjct: 63  VFAIEQVFMSKNADSALKLGQARGSAIVAAVNADLPVHEYAARLIKQAVTGNGGADKSMV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
             M+  ++        DAADAL +A+ HA    +
Sbjct: 123 QNMVMSMLKLPAKPQADAADALGVAITHANTNKT 156


>gi|163855210|ref|YP_001629508.1| Holliday junction resolvase [Bordetella petrii DSM 12804]
 gi|226698746|sp|A9I8F5|RUVC_BORPD RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|163258938|emb|CAP41237.1| crossover junction endodeoxyribonuclease [Bordetella petrii]
          Length = 182

 Score =  217 bits (555), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 68/152 (44%), Positives = 100/152 (65%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPGLRRTG+G++D  G  L +V+SGTIV     +L  RL  + + L  V ++ R
Sbjct: 1   MRVLGIDPGLRRTGFGVIDAEGMRLRYVASGTIVVPPALALPERLKVILDNLRQVARDTR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ AA+E VF+N +  +TL LGQAR  A+ + A +++ V EY    IKKAV+G G   K+
Sbjct: 61  PDVAALEIVFLNTNPASTLLLGQARGAALCALADSQLAVHEYTALQIKKAVVGTGRAAKE 120

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
           Q+ MM++ L+        D+ADALA A+CHA+
Sbjct: 121 QVQMMVQRLLSLDGTPAPDSADALACAICHAH 152


>gi|312897338|ref|ZP_07756764.1| crossover junction endodeoxyribonuclease RuvC [Megasphaera
           micronuciformis F0359]
 gi|310621556|gb|EFQ05090.1| crossover junction endodeoxyribonuclease RuvC [Megasphaera
           micronuciformis F0359]
          Length = 166

 Score =  217 bits (555), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 59/161 (36%), Positives = 91/161 (56%), Gaps = 1/161 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R +GIDPG    G+G+VD  G  L  V+ GTI +   +S A RL  +YEGL ++ + ++
Sbjct: 1   MRAMGIDPGTAICGFGVVDSDGSRLRPVTYGTIQTTPDRSDADRLVTIYEGLHELYEKYK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+   VEQ+F N++    + +GQAR I +L+   A IP+ E+ P  +K+ V G G   K+
Sbjct: 61  PDIIGVEQLFFNRNVTTAITVGQARGIILLTAKQAGIPLLEFNPLQVKQGVTGYGRATKE 120

Query: 125 QIHMMLKMLMP-ESFFKGKDAADALAIAVCHAYHANSGYYK 164
           Q+  M   L+      K  DAAD LA+A+   Y ++S    
Sbjct: 121 QVIDMTMRLLGIREKIKPDDAADGLAMAIYAVYSSHSQRLN 161


>gi|84388517|ref|ZP_00991064.1| Holliday junction resolvase [Vibrio splendidus 12B01]
 gi|84377066|gb|EAP93937.1| Holliday junction resolvase [Vibrio splendidus 12B01]
          Length = 173

 Score =  217 bits (555), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 63/154 (40%), Positives = 95/154 (61%), Gaps = 1/154 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G +L ++ SG I +  +  L  RL Q+Y G++++I  ++P+
Sbjct: 4   ILGIDPGSRITGYGVIRQNGRHLYYLGSGCIRTSEK-ELPGRLKQIYAGVSEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR  AI++   A +PV EYA   IK+AV G G  DK  +
Sbjct: 63  VFAIEQVFMAKNADSALKLGQARGSAIVAAVNADLPVHEYAARLIKQAVTGNGGADKSMV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
             M+  ++        DAADAL +A+ HA    +
Sbjct: 123 QNMVMSMLKLPAKPQADAADALGVAITHANTNKT 156


>gi|311104200|ref|YP_003977053.1| crossover junction endodeoxyribonuclease RuvC [Achromobacter
           xylosoxidans A8]
 gi|310758889|gb|ADP14338.1| crossover junction endodeoxyribonuclease RuvC [Achromobacter
           xylosoxidans A8]
          Length = 182

 Score =  217 bits (554), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 66/152 (43%), Positives = 100/152 (65%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPGLRRTG+G++D  G  L +V+SGTIV     +L+ RL  + + L  V ++ +
Sbjct: 1   MRVLGIDPGLRRTGFGVIDADGPRLRYVASGTIVVPPALALSERLKVILDNLRQVARDTQ 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ AA+E +F+N +  +TL LGQAR  A+ + A + + V EY    IKKAV+G G   K+
Sbjct: 61  PDVAALEIIFLNTNPASTLLLGQARGAALCALADSSLSVHEYTALQIKKAVVGTGRAAKE 120

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
           Q+ MM++ L+        D+ADALA A+CHA+
Sbjct: 121 QVQMMVQHLLALDGAPAPDSADALACAICHAH 152


>gi|148977431|ref|ZP_01814031.1| Holliday junction resolvase [Vibrionales bacterium SWAT-3]
 gi|145963383|gb|EDK28648.1| Holliday junction resolvase [Vibrionales bacterium SWAT-3]
          Length = 173

 Score =  217 bits (554), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 63/154 (40%), Positives = 95/154 (61%), Gaps = 1/154 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G +L ++ SG I +  +  L  RL Q+Y G++++I  ++P+
Sbjct: 4   ILGIDPGSRITGYGVIRQNGRHLYYLGSGCIRTSEK-ELPGRLKQIYAGVSEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR  AI++   A +PV EYA   IK+AV G G  DK  +
Sbjct: 63  VFAIEQVFMAKNADSALKLGQARGSAIVAAVNADLPVHEYAARLIKQAVTGNGGADKSMV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
             M+  ++        DAADAL +A+ HA    +
Sbjct: 123 QNMVMSMLKLPAKPQADAADALGVAITHANTNKT 156


>gi|221065148|ref|ZP_03541253.1| crossover junction endodeoxyribonuclease RuvC [Comamonas
           testosteroni KF-1]
 gi|220710171|gb|EED65539.1| crossover junction endodeoxyribonuclease RuvC [Comamonas
           testosteroni KF-1]
          Length = 182

 Score =  217 bits (554), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 68/151 (45%), Positives = 96/151 (63%), Gaps = 2/151 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQ--SLAFRLCQLYEGLTDVIKN 62
           +RI+GIDPGL+ TG+G++D+ G  L +V+SGTI +   +   L  RL  L++G+++V   
Sbjct: 1   MRILGIDPGLQTTGFGVIDMDGQRLSYVASGTIRTNKMELGDLPGRLKVLFDGISEVASR 60

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
           ++PE AAVE VFVN +  +TL LGQAR  A+ +   A + VSEY    +KKAV G G   
Sbjct: 61  YQPEVAAVEIVFVNVNPQSTLLLGQARGAALTALVNANLAVSEYTALQMKKAVTGHGRAA 120

Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAIAVC 153
           K QI  M+K L+      G DAADAL +A+ 
Sbjct: 121 KNQIQEMVKRLLQLPGLPGTDAADALGLAIT 151


>gi|146306302|ref|YP_001186767.1| Holliday junction resolvase [Pseudomonas mendocina ymp]
 gi|166233286|sp|A4XRR9|RUVC_PSEMY RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|145574503|gb|ABP84035.1| Holliday junction endonuclease RuvC [Pseudomonas mendocina ymp]
          Length = 174

 Score =  217 bits (554), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 65/154 (42%), Positives = 96/154 (62%), Gaps = 1/154 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G+V   G    +V+SG I +     LA RL  ++ G+++VI+   P 
Sbjct: 4   ILGIDPGSRITGYGVVRDTGRGCEYVASGCIRT-GDGPLAERLQIVFRGVSEVIRTHGPV 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
              +EQVF+ ++A + LKLGQAR  AI++   A + +SEY    +K+AV+G G  DK+Q+
Sbjct: 63  TMGIEQVFMARNADSALKLGQARGAAIVAAVEAGLEISEYTATQVKQAVVGTGAADKQQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
            MM+  L+        DA+DAL IA+CHA+H  S
Sbjct: 123 QMMVMHLLKLVQKPQIDASDALGIALCHAHHRQS 156


>gi|156345604|ref|XP_001621416.1| hypothetical protein NEMVEDRAFT_v1g222014 [Nematostella vectensis]
 gi|156207323|gb|EDO29316.1| predicted protein [Nematostella vectensis]
          Length = 162

 Score =  217 bits (553), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 61/154 (39%), Positives = 97/154 (62%), Gaps = 1/154 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G+V   G N  +V+SG I +    S+  RL  ++ G+ +VI+ + P 
Sbjct: 4   ILGIDPGSRITGYGVVRDTGRNCEYVASGCIRT-GNGSMPERLQVVFRGVREVIETYGPV 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
              +EQVF+ ++  + LKLGQAR +AI++   A + +++Y    +K+A+ G G  DK+Q+
Sbjct: 63  TMGIEQVFMARNPDSALKLGQARGVAIVAGMEAGLDIAQYTATQVKQAIAGSGGADKEQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
            +M+  L+        DA+DALAIA+CHA+H  S
Sbjct: 123 QLMVMHLLKLVQKPQIDASDALAIALCHAHHRQS 156


>gi|264680236|ref|YP_003280146.1| crossover junction endodeoxyribonuclease RuvC [Comamonas
           testosteroni CNB-2]
 gi|299533109|ref|ZP_07046494.1| Holliday junction resolvase [Comamonas testosteroni S44]
 gi|262210752|gb|ACY34850.1| crossover junction endodeoxyribonuclease RuvC [Comamonas
           testosteroni CNB-2]
 gi|298718886|gb|EFI59858.1| Holliday junction resolvase [Comamonas testosteroni S44]
          Length = 182

 Score =  217 bits (553), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 68/151 (45%), Positives = 97/151 (64%), Gaps = 2/151 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQ--SLAFRLCQLYEGLTDVIKN 62
           +RI+GIDPGL+ TG+G++D+ G  L +V+SGTI +   +   L  RL  L++G+++V   
Sbjct: 1   MRILGIDPGLQTTGFGVIDMEGQRLSYVASGTIRTNKMELGDLPGRLKVLFDGISEVASR 60

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
           ++PE AAVE VFVN +  +TL LGQAR  A+ +   A + VSEY    +KKAV+G G   
Sbjct: 61  YQPEVAAVEIVFVNVNPQSTLLLGQARGAALTALVNANLAVSEYTALQMKKAVVGHGRAA 120

Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAIAVC 153
           K QI  M+K L+      G DAADAL +A+ 
Sbjct: 121 KSQIQEMVKRLLQLPGLPGTDAADALGLAIT 151


>gi|330502218|ref|YP_004379087.1| Holliday junction resolvase [Pseudomonas mendocina NK-01]
 gi|328916504|gb|AEB57335.1| Holliday junction resolvase [Pseudomonas mendocina NK-01]
          Length = 174

 Score =  217 bits (553), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 66/154 (42%), Positives = 96/154 (62%), Gaps = 1/154 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G+V   G    +V+SG I +     LA RL  ++ G+++VI+   P 
Sbjct: 4   ILGIDPGSRITGYGVVRDTGRGCEYVASGCIRT-GNGPLAERLQIVFRGVSEVIRTHGPV 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
              +EQVF+ ++A + LKLGQAR  AI++   A + VSEY    +K+AV+G G  DK+Q+
Sbjct: 63  TMGIEQVFMARNADSALKLGQARGAAIVAAVEAGLEVSEYTATQVKQAVVGSGAADKQQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
            MM+  L+        DA+DAL IA+CHA+H  S
Sbjct: 123 QMMVMHLLKLVQKPQIDASDALGIALCHAHHRQS 156


>gi|301060165|ref|ZP_07201032.1| crossover junction endodeoxyribonuclease RuvC [delta
           proteobacterium NaphS2]
 gi|300445677|gb|EFK09575.1| crossover junction endodeoxyribonuclease RuvC [delta
           proteobacterium NaphS2]
          Length = 167

 Score =  216 bits (552), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 54/164 (32%), Positives = 96/164 (58%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           IR++G+DPGLR TG+G+++     + F+ +G I    +   A ++ ++++G  ++++ ++
Sbjct: 2   IRVLGVDPGLRITGYGLLEEKNRRISFMEAGLIKPPEKLPFARKIHRIFQGTVELLERFK 61

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  AVE +F  K+A ++LKLG AR   + +     I V EY P  IKK+V+G G  DK+
Sbjct: 62  PDAMAVEDLFYAKNARSSLKLGHARGAILAAAGQHDISVFEYTPLEIKKSVVGYGRADKE 121

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
           Q+  M+  ++        DA+DALA A+CH   +     +  S+
Sbjct: 122 QVRSMVNAILGLKKQVPIDASDALATAICHVNSSGLRMLQEKSR 165


>gi|188586413|ref|YP_001917958.1| Holliday junction endonuclease RuvC [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|229558766|sp|B2A5L6|RUVC_NATTJ RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|179351100|gb|ACB85370.1| Holliday junction endonuclease RuvC [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 161

 Score =  216 bits (552), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 52/161 (32%), Positives = 93/161 (57%), Gaps = 3/161 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + I+G+DPG+   G+GI+   G  L  ++ G + +   +S   RL  +Y+G++++I  + 
Sbjct: 1   MIIMGLDPGIAACGYGIIHAKGTKLECLACGVLRTYSDESATKRLESIYQGVSNLISEFS 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P   AVE +F  K++   +K+GQA+ + +L+ A   + + EY P  +K+ V G G   K+
Sbjct: 61  PNTVAVESLFFAKNSKTAMKVGQAKGVLMLAAAHNNLEIFEYTPLQVKQGVCGYGSASKE 120

Query: 125 QIHMMLKMLM-PESFFKGKDAADALAIAVCH--AYHANSGY 162
           Q+  M+K ++  +   K  DAADALA+++CH  AY   +  
Sbjct: 121 QVQKMVKQILSLDKIPKPDDAADALAVSLCHSQAYRLRTRL 161


>gi|258543670|ref|YP_003189103.1| Holliday junction resolvase [Acetobacter pasteurianus IFO 3283-01]
 gi|256634748|dbj|BAI00724.1| Holliday junction resolvase RuvC [Acetobacter pasteurianus IFO
           3283-01]
 gi|256637804|dbj|BAI03773.1| Holliday junction resolvase RuvC [Acetobacter pasteurianus IFO
           3283-03]
 gi|256640858|dbj|BAI06820.1| Holliday junction resolvase RuvC [Acetobacter pasteurianus IFO
           3283-07]
 gi|256643913|dbj|BAI09868.1| Holliday junction resolvase RuvC [Acetobacter pasteurianus IFO
           3283-22]
 gi|256646968|dbj|BAI12916.1| Holliday junction resolvase RuvC [Acetobacter pasteurianus IFO
           3283-26]
 gi|256650021|dbj|BAI15962.1| Holliday junction resolvase RuvC [Acetobacter pasteurianus IFO
           3283-32]
 gi|256653011|dbj|BAI18945.1| Holliday junction resolvase RuvC [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256656065|dbj|BAI21992.1| Holliday junction resolvase RuvC [Acetobacter pasteurianus IFO
           3283-12]
          Length = 168

 Score =  216 bits (551), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 75/163 (46%), Positives = 111/163 (68%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPGLR TGWG++DV G+ L  V +G I +    S+  RL  L++ L  +I    
Sbjct: 2   VRLLGIDPGLRFTGWGVIDVEGNRLRHVENGVIATNSADSVPDRLKVLHDNLLMLIDRLA 61

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+E+AVE+ +VN++  ATLKLG AR +A+L PALA + V+EY   ++KK+V+G G  DKK
Sbjct: 62  PQESAVEETYVNRNGSATLKLGYARGVALLVPALAGVSVAEYGALSVKKSVVGTGSADKK 121

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
           Q+ MM++ L+P +     DA+DALA+A+CHA+H  S  +  A 
Sbjct: 122 QVEMMVRRLLPGAEIIRADASDALAVAICHAHHRASARHIAAG 164


>gi|332525532|ref|ZP_08401687.1| Holliday junction resolvase [Rubrivivax benzoatilyticus JA2]
 gi|332109097|gb|EGJ10020.1| Holliday junction resolvase [Rubrivivax benzoatilyticus JA2]
          Length = 191

 Score =  215 bits (550), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 69/158 (43%), Positives = 100/158 (63%), Gaps = 2/158 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSC--VRQSLAFRLCQLYEGLTDVIKN 62
           +RI+GIDPGL+RTG+G++D  G  L +V+SG I +    R  L  RL  ++EG+ +V+  
Sbjct: 1   MRILGIDPGLQRTGFGVIDADGPRLAYVASGVIDTAEAPRGDLPQRLKIIFEGVAEVVSR 60

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
           + P+ A+ E VFVN +  +TL LGQAR  A+ +   A +PV+EY    +KKAV G G   
Sbjct: 61  YEPQAASAEIVFVNTNPQSTLLLGQARGAALAALVSAGLPVAEYTAVQMKKAVTGHGLAS 120

Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           K+QI  M++ L+      GKDAADAL IA+ HA+   +
Sbjct: 121 KEQIQEMVRRLLALPGVPGKDAADALGIAIAHAHAGGT 158


>gi|313677321|ref|YP_004055317.1| crossover junction endodeoxyribonuclease ruvc [Marivirga tractuosa
           DSM 4126]
 gi|312944019|gb|ADR23209.1| crossover junction endodeoxyribonuclease RuvC [Marivirga tractuosa
           DSM 4126]
          Length = 182

 Score =  215 bits (550), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 53/160 (33%), Positives = 94/160 (58%), Gaps = 1/160 (0%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M K   I+G+DPG    G+G++ + G+ +  +  G I      +   +L ++++ +T +I
Sbjct: 1   MPKDKIILGLDPGTSVMGYGVIQITGNKMSMLQYGVIHLSKYANHEIKLRKIFDRVTSLI 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
           +++ P+E A+E  F  K+  + LKLG+A+ +A+ +     +P+SEYAP  +K++V G G+
Sbjct: 61  EDYAPDEVALEAPFYGKNIQSMLKLGRAQGVAMAAALRLDLPISEYAPKKVKQSVTGNGN 120

Query: 121 GDKKQIHMMLKMLMP-ESFFKGKDAADALAIAVCHAYHAN 159
             K+Q+  MLK L+  +   K  DA DAL +AVCH +   
Sbjct: 121 ASKEQVAEMLKTLLGIKEIPKLLDATDALGVAVCHHFQGG 160


>gi|162146621|ref|YP_001601080.1| Holliday junction resolvase [Gluconacetobacter diazotrophicus PAl
           5]
 gi|209543387|ref|YP_002275616.1| Holliday junction resolvase [Gluconacetobacter diazotrophicus PAl
           5]
 gi|189046069|sp|A9HAV5|RUVC_GLUDA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|161785196|emb|CAP54742.1| Crossover junction endodeoxyribonuclease ruvC [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209531064|gb|ACI51001.1| crossover junction endodeoxyribonuclease RuvC [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 168

 Score =  215 bits (550), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 76/163 (46%), Positives = 110/163 (67%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPGLR TGWG+VDV G+ LC V+ G I +     +  RL  L++ L D+++ + 
Sbjct: 2   VRLLGIDPGLRFTGWGLVDVDGNRLCHVADGVIATDGDAPVPERLRCLHDSLLDLVRRYG 61

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P EAAVE+ +VN++  +TLKLG AR +A+L PALA I VSEY    +K+AV+G G   K 
Sbjct: 62  PREAAVEETYVNRNGASTLKLGYARGVALLVPALAGIAVSEYGAMAVKRAVVGTGAASKD 121

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
           Q+ MM++ L+P +  +  DA+DALA+A+CHA+H  S     A 
Sbjct: 122 QVEMMVRRLLPGATIRRADASDALAVAICHAHHRASALRVSAG 164


>gi|154246994|ref|YP_001417952.1| Holliday junction resolvase [Xanthobacter autotrophicus Py2]
 gi|238686726|sp|A7IJV2|RUVC_XANP2 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|154161079|gb|ABS68295.1| crossover junction endodeoxyribonuclease RuvC [Xanthobacter
           autotrophicus Py2]
          Length = 169

 Score =  215 bits (550), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 73/151 (48%), Positives = 108/151 (71%)

Query: 3   KSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
            +IRI+G+DPGLRRTGWG++DV G  L FV+ GTI+   +  +  RL  L+  L  VI+ 
Sbjct: 4   NAIRILGLDPGLRRTGWGVIDVTGSRLAFVACGTILPPEQAPMGERLAHLHRELLGVIER 63

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
           + P+EAAVE+ FVN +  +TLKLGQAR + +L+PA   +PV+EYA   +KK+V+G G  +
Sbjct: 64  FSPQEAAVEETFVNMNPSSTLKLGQARGVVLLAPAQMGLPVAEYAALLVKKSVVGAGRAE 123

Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAIAVC 153
           K Q+ MM+ +L+P++  + +DA+DALA+AV 
Sbjct: 124 KAQVRMMIGILLPKATPETEDASDALAVAVT 154


>gi|171464160|ref|YP_001798273.1| crossover junction endodeoxyribonuclease RuvC [Polynucleobacter
           necessarius subsp. necessarius STIR1]
 gi|238692823|sp|B1XS24|RUVC_POLNS RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|171193698|gb|ACB44659.1| crossover junction endodeoxyribonuclease RuvC [Polynucleobacter
           necessarius subsp. necessarius STIR1]
          Length = 168

 Score =  215 bits (550), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 71/155 (45%), Positives = 102/155 (65%), Gaps = 3/155 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R IGIDPGL  TG+GI+DV G  L +V+SGTI S      A RL  LY GL +V++ +R
Sbjct: 1   MRWIGIDPGLCTTGFGIIDVDGQKLTYVASGTIES---GDPAKRLGALYAGLKEVLETYR 57

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           PE AA+E+VF+N +  +TL LGQAR   I +    ++PV+EY+   +K+A++G G   K 
Sbjct: 58  PESAAIEEVFLNVNPRSTLMLGQARGAVIAALVSEKLPVAEYSALRVKQAIVGTGRAAKP 117

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHAN 159
           Q+  M+K L+  +   G DA+DAL +A+C A+HA 
Sbjct: 118 QVQEMVKRLLRLNRAPGTDASDALGVAICAAHHAQ 152


>gi|317131998|ref|YP_004091312.1| crossover junction endodeoxyribonuclease RuvC [Ethanoligenens
           harbinense YUAN-3]
 gi|315469977|gb|ADU26581.1| crossover junction endodeoxyribonuclease RuvC [Ethanoligenens
           harbinense YUAN-3]
          Length = 167

 Score =  215 bits (549), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 54/162 (33%), Positives = 90/162 (55%), Gaps = 1/162 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + ++GIDPG    G+G V  A +    +  G I +        RL Q+Y+G+ ++ +  R
Sbjct: 1   MVVLGIDPGYAIIGYGAVRYAQNRYTVLEYGAIRTEANTPFPARLAQIYDGMRELFRVCR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  AVE++F N +    + + +AR + +L+   A + V+EY P+ +K+AV+G G  +K 
Sbjct: 61  PDAVAVEELFFNTNTTTGIAVAEARGVILLAAEQAGVRVAEYTPSQVKQAVVGYGRAEKA 120

Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHANSGYYKI 165
           Q+  + +ML+      K  D ADALAIA+CHA  A S    +
Sbjct: 121 QVMELTRMLLGLREVPKPDDTADALAIAICHANSAGSRLGAL 162


>gi|254468664|ref|ZP_05082070.1| crossover junction endodeoxyribonuclease RuvC [beta proteobacterium
           KB13]
 gi|207087474|gb|EDZ64757.1| crossover junction endodeoxyribonuclease RuvC [beta proteobacterium
           KB13]
          Length = 175

 Score =  215 bits (549), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 55/152 (36%), Positives = 93/152 (61%), Gaps = 1/152 (0%)

Query: 4   SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCV-RQSLAFRLCQLYEGLTDVIKN 62
           S R+IGIDPGLR TG+GIVD       +++SG I +   +     RL  +++ +++++  
Sbjct: 3   STRVIGIDPGLRITGYGIVDCENKKTTYITSGVIKTTSEKLPYPERLKIIFDEVSEIVSK 62

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
            +P +  +E+ FVN +A ++L LGQAR +A+ +    ++ + EY    IKK+V+G GH +
Sbjct: 63  HQPNQMCIEKTFVNMNANSSLALGQARGVAMAAGIQHQLQIYEYTALQIKKSVVGNGHAE 122

Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAIAVCH 154
           K Q+  M++ L+      G D++DALA  +CH
Sbjct: 123 KIQVQSMVQKLLNLPEVLGPDSSDALACVLCH 154


>gi|15596162|ref|NP_249656.1| Holliday junction resolvase [Pseudomonas aeruginosa PAO1]
 gi|116048890|ref|YP_792309.1| Holliday junction resolvase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218893064|ref|YP_002441933.1| Holliday junction resolvase [Pseudomonas aeruginosa LESB58]
 gi|254239313|ref|ZP_04932636.1| Holliday junction resolvase RuvC [Pseudomonas aeruginosa C3719]
 gi|254245248|ref|ZP_04938570.1| Holliday junction resolvase RuvC [Pseudomonas aeruginosa 2192]
 gi|2498881|sp|Q51424|RUVC_PSEAE RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|122257997|sp|Q02IC7|RUVC_PSEAB RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|226725475|sp|B7UXW7|RUVC_PSEA8 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|9946872|gb|AAG04354.1|AE004530_7 Holliday junction resolvase RuvC [Pseudomonas aeruginosa PAO1]
 gi|1183840|dbj|BAA11817.1| Holliday junction specific endonuclease [Pseudomonas aeruginosa]
 gi|115584111|gb|ABJ10126.1| Holliday junction resolvase RuvC [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126171244|gb|EAZ56755.1| Holliday junction resolvase RuvC [Pseudomonas aeruginosa C3719]
 gi|126198626|gb|EAZ62689.1| Holliday junction resolvase RuvC [Pseudomonas aeruginosa 2192]
 gi|218773292|emb|CAW29104.1| Holliday junction resolvase RuvC [Pseudomonas aeruginosa LESB58]
          Length = 174

 Score =  215 bits (548), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 61/154 (39%), Positives = 94/154 (61%), Gaps = 1/154 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G+V        +V+SG I +     L  RL  ++  + +VI+   P 
Sbjct: 4   ILGIDPGSRITGFGVVRETARGCEYVASGCIRT-GNGPLHERLHVVFRSVREVIRTHGPT 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             ++EQVF+ ++A + LKLGQAR  AI++     + V+EY  + +K+AV+G G  DK+Q+
Sbjct: 63  ALSIEQVFMARNADSALKLGQARGAAIVAAMEEGLSVAEYTASQVKQAVVGTGGADKQQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
            MM+  L+  +     DA+DALAIA+CHA+   S
Sbjct: 123 QMMVMHLLKLTQKPQIDASDALAIALCHAHTQQS 156


>gi|260576657|ref|ZP_05844644.1| crossover junction endodeoxyribonuclease RuvC [Rhodobacter sp. SW2]
 gi|259021142|gb|EEW24451.1| crossover junction endodeoxyribonuclease RuvC [Rhodobacter sp. SW2]
          Length = 206

 Score =  214 bits (547), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 85/165 (51%), Positives = 113/165 (68%), Gaps = 1/165 (0%)

Query: 3   KSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
           +++R++GIDPGLR  GWG++DV G  L  V++G I       LA RL  L+  LT+V++ 
Sbjct: 37  QAVRVLGIDPGLRNLGWGVIDVDGARLTHVANG-ICHSQDGDLAQRLLSLHTQLTEVLRA 95

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
           + P+ AAVE  FVNKDAVATLKLGQAR IA+L PA A + V EYAPN +KK V+GVGH  
Sbjct: 96  FAPDAAAVEHTFVNKDAVATLKLGQARGIALLVPAQAGLTVGEYAPNAVKKTVVGVGHAA 155

Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
           K Q+  M+++ +P     G DAADALA+A+CHA+H  S     A+
Sbjct: 156 KVQVDHMVRIHLPGVQISGPDAADALAVAICHAHHLQSAGRFEAA 200


>gi|152986043|ref|YP_001349892.1| Holliday junction resolvase [Pseudomonas aeruginosa PA7]
 gi|166233285|sp|A6VA07|RUVC_PSEA7 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|150961201|gb|ABR83226.1| crossover junction endodeoxyribonuclease RuvC [Pseudomonas
           aeruginosa PA7]
          Length = 174

 Score =  214 bits (547), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 61/154 (39%), Positives = 94/154 (61%), Gaps = 1/154 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G+V        +V+SG I +     L  RL  ++  + +VI+   P 
Sbjct: 4   ILGIDPGSRITGFGVVRETARGCEYVASGCIRT-GNGPLHERLQVVFRSVREVIRTHGPT 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             ++EQVF+ ++A + LKLGQAR  AI++     + V+EY  + +K+AV+G G  DK+Q+
Sbjct: 63  TLSIEQVFMARNADSALKLGQARGAAIVAAMEEGLSVAEYTASQVKQAVVGTGGADKQQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
            MM+  L+  +     DA+DALAIA+CHA+   S
Sbjct: 123 QMMVMHLLKLTQKPQIDASDALAIALCHAHTQQS 156


>gi|70732090|ref|YP_261846.1| Holliday junction resolvase [Pseudomonas fluorescens Pf-5]
 gi|110282923|sp|Q4K7D7|RUVC_PSEF5 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|68346389|gb|AAY93995.1| crossover junction endodeoxyribonuclease RuvC [Pseudomonas
           fluorescens Pf-5]
          Length = 174

 Score =  214 bits (547), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 62/154 (40%), Positives = 96/154 (62%), Gaps = 1/154 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G+V   G    +V+SG I +     L  RL  +Y G+ +VI+ + P 
Sbjct: 4   ILGIDPGSRITGYGVVRDTGRGCVYVASGCIRTGAG-ELPDRLQIVYRGVREVIQTYGPV 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
              +E+VF+ ++A + LKLGQAR  AI++ A   + ++EY    +K+AV G G  +K+Q+
Sbjct: 63  TMGIEKVFMARNADSALKLGQARGAAIVAGAEEGLEIAEYTATQVKQAVAGTGGANKEQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
            MM+  L+  +     DA+DALAIA+CHA+  +S
Sbjct: 123 QMMVMHLLKLTTKPQIDASDALAIAICHAHTRSS 156


>gi|227825063|ref|ZP_03989895.1| crossover junction endodeoxyribonuclease ruvC [Acidaminococcus sp.
           D21]
 gi|226905562|gb|EEH91480.1| crossover junction endodeoxyribonuclease ruvC [Acidaminococcus sp.
           D21]
          Length = 165

 Score =  214 bits (547), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 57/147 (38%), Positives = 87/147 (59%), Gaps = 1/147 (0%)

Query: 8   IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEE 67
           +GIDPG    G+G+V +    L  +  G+I++        RL  +YE LT +IK ++P+ 
Sbjct: 4   LGIDPGTAICGYGLVKLERSRLIPIHYGSILTDKDMLPEKRLQIIYEALTGLIKEYKPDF 63

Query: 68  AAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIH 127
            +VE++F N++    + +GQAR + +LS A+A +PV EY P  IK+A+ G G  DKKQ+ 
Sbjct: 64  MSVEKLFFNRNVTTAIAVGQARGVIVLSAAMADLPVYEYTPIQIKQAITGTGRADKKQVT 123

Query: 128 MMLKMLMPE-SFFKGKDAADALAIAVC 153
            M+  L+      K  D ADALAIA+ 
Sbjct: 124 YMVMKLLHLTEEPKPDDTADALAIAIT 150


>gi|260893479|ref|YP_003239576.1| crossover junction endodeoxyribonuclease RuvC [Ammonifex degensii
           KC4]
 gi|260865620|gb|ACX52726.1| crossover junction endodeoxyribonuclease RuvC [Ammonifex degensii
           KC4]
          Length = 160

 Score =  214 bits (546), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 49/152 (32%), Positives = 85/152 (55%), Gaps = 1/152 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + ++G+DPG  R G+G+V   G +L  ++ G + +   Q L  RL  LY  L ++++ ++
Sbjct: 1   MVVMGVDPGAERLGYGLVREDGQHLKAIAYGCLHTPADQPLPLRLKSLYRALKELLQKYQ 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P   AVE++F  ++    + +G+   + +L+ A +  PV  Y P  +K+AV G G   K+
Sbjct: 61  PNALAVEELFWGQNVRTAMMVGKVAGVVLLAAAESNCPVFSYPPQVVKQAVTGYGRATKR 120

Query: 125 QIHMMLKMLMPESFFK-GKDAADALAIAVCHA 155
           Q+  M+K L+         D ADALA+A+CH 
Sbjct: 121 QVQYMVKELLGLPAPPSPDDTADALALAICHL 152


>gi|229814934|ref|ZP_04445272.1| hypothetical protein COLINT_01977 [Collinsella intestinalis DSM
           13280]
 gi|229809421|gb|EEP45185.1| hypothetical protein COLINT_01977 [Collinsella intestinalis DSM
           13280]
          Length = 174

 Score =  214 bits (546), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 60/157 (38%), Positives = 90/157 (57%), Gaps = 1/157 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + I+GIDPGL  TGWGIV+     +   + G I +     LA RL ++ + LT V+  +R
Sbjct: 1   MVILGIDPGLANTGWGIVEERRGEVRCRAYGCIETSSGSDLAARLRRIADELTAVVDRYR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+EAAVE ++   +  + +    AR  A+++ +L  + V EY P  IK+AV+G G  DK 
Sbjct: 61  PQEAAVEGIYFGANVRSAIPTAHARGAALVACSLCGVEVGEYTPMQIKQAVVGTGAADKT 120

Query: 125 QIHMMLKMLMPES-FFKGKDAADALAIAVCHAYHANS 160
           Q+  M++ L+      K   AADALA AVCHA+   +
Sbjct: 121 QVTYMVRTLLHLDHDPKPDHAADALACAVCHAHLHRT 157


>gi|254787342|ref|YP_003074771.1| Holliday junction resolvase [Teredinibacter turnerae T7901]
 gi|259495695|sp|C5BQT6|RUVC_TERTT RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|237683498|gb|ACR10762.1| crossover junction endodeoxyribonuclease RuvC [Teredinibacter
           turnerae T7901]
          Length = 177

 Score =  214 bits (546), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 64/158 (40%), Positives = 99/158 (62%), Gaps = 4/158 (2%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVR----QSLAFRLCQLYEGLTDVIKN 62
           I+G+DPG R+ G+GI++  G  L +V+SG +           LA RL  +++ L+++I+ 
Sbjct: 4   ILGVDPGSRKMGYGIINATGSRLGYVASGVVRIPQPLLVADCLAERLKVIFDSLSEIIEQ 63

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
           ++P+E A+E VF+ K A + LKLGQAR  AI++     +PVSEY    +K+AV+G G  D
Sbjct: 64  YQPQEFAIENVFMAKSAGSALKLGQARGAAIVAAVNKDLPVSEYEARKVKQAVVGTGAAD 123

Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           K Q+  M+  L+  S    +DAADALA+A+CHA    +
Sbjct: 124 KLQVQHMVCTLLKLSKAPAEDAADALAVAICHANSQQN 161


>gi|327402181|ref|YP_004343019.1| Crossover junction endodeoxyribonuclease ruvC [Fluviicola taffensis
           DSM 16823]
 gi|327317689|gb|AEA42181.1| Crossover junction endodeoxyribonuclease ruvC [Fluviicola taffensis
           DSM 16823]
          Length = 185

 Score =  214 bits (545), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 52/162 (32%), Positives = 90/162 (55%), Gaps = 1/162 (0%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M +   I+GIDPG    G+G++ + G  +  ++ G I      +   +L ++++ +  ++
Sbjct: 1   MAEDKIILGIDPGTTVLGYGLIHIKGTKIEMLNFGIIQLNKLDNQPDKLKRIFDRIDGLM 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
           + ++P+E A+E  F  K+  + LKLG+A+ +AI +     IP  EY P  IK+A+ G G+
Sbjct: 61  EEYKPDEMAIEAPFFGKNVQSMLKLGRAQGVAIAASLRRNIPYEEYTPKRIKQAITGNGN 120

Query: 121 GDKKQIHMMLKMLMP-ESFFKGKDAADALAIAVCHAYHANSG 161
             K+Q+  ML+ L+  +   K  DA D LA AVCH +    G
Sbjct: 121 ASKEQVAAMLQTLLKFDEIPKYLDATDGLAAAVCHHFSKGIG 162


>gi|146283145|ref|YP_001173298.1| Holliday junction resolvase [Pseudomonas stutzeri A1501]
 gi|166233288|sp|A4VNA5|RUVC_PSEU5 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|145571350|gb|ABP80456.1| crossover junction endodeoxyribonuclease RuvC [Pseudomonas stutzeri
           A1501]
          Length = 174

 Score =  214 bits (545), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 64/154 (41%), Positives = 98/154 (63%), Gaps = 1/154 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G+V   G    +V+SG I +     L+ RL  ++ G+++VI+ + P 
Sbjct: 4   ILGIDPGSRITGYGVVRDTGRGCEYVASGCIRTGSG-ELSERLRAVFSGVSEVIRTYGPV 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
              +EQVF+ ++A + LKLGQAR  AI++ A A + ++EY    +K+A+ G G  DK+Q+
Sbjct: 63  TMGIEQVFMARNADSALKLGQARGAAIVAGAEAGLQIAEYTATQVKQAIAGTGGADKQQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
            MM+  L+        DA+DALAIA+CHA+H  S
Sbjct: 123 QMMVMHLLKLLEKPQIDASDALAIALCHAHHRQS 156


>gi|327481498|gb|AEA84808.1| Holliday junction resolvase [Pseudomonas stutzeri DSM 4166]
          Length = 174

 Score =  214 bits (545), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 64/154 (41%), Positives = 98/154 (63%), Gaps = 1/154 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G+V   G    +V+SG I +     L+ RL  ++ G+++VI+ + P 
Sbjct: 4   ILGIDPGSRITGYGVVRDTGRGCEYVASGCIRTGSG-ELSERLRAVFSGVSEVIRTYGPV 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
              +EQVF+ ++A + LKLGQAR  AI++ A A + ++EY    +K+A+ G G  DK+Q+
Sbjct: 63  TMGIEQVFMARNADSALKLGQARGAAIVAGAEAGLQIAEYTATQVKQAIAGTGGADKQQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
            MM+  L+        DA+DALAIA+CHA+H  S
Sbjct: 123 QMMVMHLLKLLEKPQIDASDALAIALCHAHHGQS 156


>gi|146328711|ref|YP_001210062.1| crossover junction endodeoxyribonuclease RuvC [Dichelobacter
           nodosus VCS1703A]
 gi|187611413|sp|A5EXG1|RUVC_DICNV RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|146232181|gb|ABQ13159.1| crossover junction endodeoxyribonuclease RuvC [Dichelobacter
           nodosus VCS1703A]
          Length = 176

 Score =  213 bits (544), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 64/155 (41%), Positives = 104/155 (67%), Gaps = 1/155 (0%)

Query: 6   RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           RI+GIDPG R TG+GI+DV G  + +V SG I    +  +  RL  +++G+ ++++ + P
Sbjct: 5   RILGIDPGSRITGYGIIDVRGTAIDYVDSGCIRLATQL-MPQRLMTIHQGIFELVQQYHP 63

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
           ++ A+E +FV+K+  + LKLGQAR +AI +  L+ + ++EYA  +IK+AV+G G  DK Q
Sbjct: 64  QQFAIEAIFVHKNPNSALKLGQARGVAICAAVLSGLSINEYAAKSIKQAVVGKGGADKIQ 123

Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           +  M+K+L+        DAADALA+A+ HA+H  +
Sbjct: 124 VQHMVKILLNRQGAIQSDAADALAVAITHAHHLQT 158


>gi|329113837|ref|ZP_08242608.1| Crossover junction endodeoxyribonuclease RuvC [Acetobacter pomorum
           DM001]
 gi|326696847|gb|EGE48517.1| Crossover junction endodeoxyribonuclease RuvC [Acetobacter pomorum
           DM001]
          Length = 168

 Score =  213 bits (544), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 75/163 (46%), Positives = 109/163 (66%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPGLR TGWG++DV G+ L  V +G I +    S+  RL  L++ L  +I    
Sbjct: 2   VRLLGIDPGLRFTGWGVIDVEGNRLRHVENGIIATNSADSVPDRLKVLHDNLLMLINRLE 61

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P EAAVE+ +VN++  ATLKLG AR +A+L PAL  + V+EY   ++KK+V+G G  DKK
Sbjct: 62  PAEAAVEETYVNRNGSATLKLGYARGVALLVPALVGVSVAEYGALSVKKSVVGTGSADKK 121

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
           Q+ MM++ L+P +     DA+DALA+A+CHA+H  S  +  A 
Sbjct: 122 QVEMMVRRLLPGAEIVRADASDALAVAICHAHHRASARHIAAG 164


>gi|87198446|ref|YP_495703.1| crossover junction endodeoxyribonuclease RuvC [Novosphingobium
           aromaticivorans DSM 12444]
 gi|123763648|sp|Q2GBA4|RUVC_NOVAD RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|87134127|gb|ABD24869.1| crossover junction endodeoxyribonuclease RuvC [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 158

 Score =  213 bits (543), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 72/156 (46%), Positives = 105/156 (67%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + I+GIDPGL  TGWG+V  +G  L  V++G I +  + ++A RL +L   L  VI  ++
Sbjct: 1   MIILGIDPGLTVTGWGVVAKSGSRLSHVANGQIRTDNKATMAERLVELDSALAAVIDIYK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  AVE+VFVN +  +TLKLGQAR +A+++ A + IPV+EY    IKKA++G G  +K+
Sbjct: 61  PDTGAVEEVFVNVNPQSTLKLGQARGVAMVAVARSGIPVAEYPTKVIKKALVGTGGAEKQ 120

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           QI  MLK+L+P     G+DA+DALA+A+ HA    S
Sbjct: 121 QIQHMLKILLPGVQLAGEDASDALAVAITHANMLGS 156


>gi|126462969|ref|YP_001044083.1| Holliday junction resolvase [Rhodobacter sphaeroides ATCC 17029]
 gi|166233290|sp|A3PLU5|RUVC_RHOS1 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|126104633|gb|ABN77311.1| crossover junction endodeoxyribonuclease RuvC [Rhodobacter
           sphaeroides ATCC 17029]
          Length = 168

 Score =  213 bits (543), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 85/157 (54%), Positives = 110/157 (70%), Gaps = 1/157 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPGLR  GWG++DV+G  L  V++G   S     LA RL  L+  LTDV+  ++
Sbjct: 1   MRVLGIDPGLRNMGWGVIDVSGTRLAHVANGICHSDSG-DLAQRLLSLHGQLTDVLARFQ 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ AAVE  FVNKD VATLKLGQAR IA+L PA A + V EYAPN +KK V+GVGH  K+
Sbjct: 60  PDTAAVEHTFVNKDGVATLKLGQARGIALLVPAQAGLAVGEYAPNAVKKTVVGVGHAAKE 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSG 161
           QI  M+++ +P     G DAADALA+A+CHA+H  S 
Sbjct: 120 QIQHMVRLHLPGVALAGPDAADALAVAICHAHHVQSS 156


>gi|330811394|ref|YP_004355856.1| Crossover junction endodeoxyribonuclease [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327379502|gb|AEA70852.1| Crossover junction endodeoxyribonuclease [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 174

 Score =  213 bits (543), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 62/154 (40%), Positives = 97/154 (62%), Gaps = 1/154 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G+V   G    +V+SG I +     L  RL  +Y G+ +VI+ + P 
Sbjct: 4   ILGIDPGSRITGYGVVRDTGRGCVYVASGCIRTGAG-ELHERLQIVYRGVREVIQTYGPV 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
              +E+VF+ ++A + LKLGQAR  AI++ A   + ++EY+   +K+AV+G G  +K+Q+
Sbjct: 63  TMGIEKVFMARNADSALKLGQARGAAIVAGAEENLEIAEYSATQVKQAVVGTGAANKEQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
            MM+  L+        DA+DALAIA+CHA+  +S
Sbjct: 123 QMMVMHLLKLVSKPQIDASDALAIAICHAHTRSS 156


>gi|91202551|emb|CAJ72190.1| strongly similar to crossover junction endodioxyribonuclease RuvC
           [Candidatus Kuenenia stuttgartiensis]
          Length = 155

 Score =  212 bits (542), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 58/154 (37%), Positives = 97/154 (62%), Gaps = 1/154 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++I+GIDPG    G+G+++ +G  +  V+ G+I +   Q+   RL  +Y G+T++I  ++
Sbjct: 1   MKILGIDPGTLIAGYGVIEKSGAEIKAVAYGSIKTGKNQNFPERLKTIYTGVTELITIYK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  AVE+VF  K+  A +K+G+ R I  L  A+A IP++EYA   +KKAV G G+  K 
Sbjct: 61  PDHMAVEEVFFGKNFKAAIKIGEGRGIIFLCAAMANIPIAEYAARVVKKAVAGNGNAHKG 120

Query: 125 QIHMMLKMLMPESFFK-GKDAADALAIAVCHAYH 157
           ++  M+K ++        +DA+DALAIA+CH + 
Sbjct: 121 KVQEMVKAILGLPEIPQPEDASDALAIAICHGHR 154


>gi|91786981|ref|YP_547933.1| Holliday junction resolvase [Polaromonas sp. JS666]
 gi|123165277|sp|Q12EK7|RUVC_POLSJ RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|91696206|gb|ABE43035.1| crossover junction endodeoxyribonuclease RuvC [Polaromonas sp.
           JS666]
          Length = 182

 Score =  212 bits (541), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 66/158 (41%), Positives = 99/158 (62%), Gaps = 2/158 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCV--RQSLAFRLCQLYEGLTDVIKN 62
           +RI+GIDPGL+  G+G+V+V G +L +V+SGTI +    R  L  RL  L++G+ +V++ 
Sbjct: 1   MRILGIDPGLQIAGFGVVEVDGPHLHYVASGTIKTTHMVRGDLPARLKVLFDGVREVVQR 60

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
           ++P+ A+VE VF N +  ATL LGQAR   I +   + + V+EY    +KKAV G G   
Sbjct: 61  YQPDMASVEIVFTNVNPQATLLLGQARGACITALVSSDLTVAEYTALQMKKAVAGYGKAG 120

Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           K ++  M+  L+      GKDAADAL +A+ HA+   S
Sbjct: 121 KAEVQQMVMRLLKLPALPGKDAADALGLAITHAHAGRS 158


>gi|154149660|ref|YP_001403278.1| Holliday junction resolvase [Candidatus Methanoregula boonei 6A8]
 gi|153998212|gb|ABS54635.1| crossover junction endodeoxyribonuclease RuvC [Methanoregula boonei
           6A8]
          Length = 156

 Score =  212 bits (540), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 51/153 (33%), Positives = 85/153 (55%), Gaps = 1/153 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + +IGIDPGL R G+G++         +  G + +        RL ++  GL  + + + 
Sbjct: 1   MMVIGIDPGLARLGYGVIRAERGTAVPLCYGCLETRAGARPGERLLEISRGLASLFERYP 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  AVE++F +K+  + + + + R I +L+     IPV+EY PN +K+AV G G  DK 
Sbjct: 61  PDALAVEKLFFSKNVTSAMGVSEVRGIVLLAAEERGIPVTEYTPNQVKQAVTGSGRADKA 120

Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAY 156
           Q+  M+  L+      +  DAADAL+IA+CH +
Sbjct: 121 QVQQMITRLLRLHEVPQPDDAADALSIALCHIH 153


>gi|77464126|ref|YP_353630.1| Holliday junction resolvase [Rhodobacter sphaeroides 2.4.1]
 gi|221639993|ref|YP_002526255.1| Holliday junction resolvase [Rhodobacter sphaeroides KD131]
 gi|332559002|ref|ZP_08413324.1| Holliday junction resolvase [Rhodobacter sphaeroides WS8N]
 gi|110282925|sp|Q3J0F5|RUVC_RHOS4 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|254767483|sp|B9KKV7|RUVC_RHOSK RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|77388544|gb|ABA79729.1| Holliday junction endonuclease RuvC [Rhodobacter sphaeroides 2.4.1]
 gi|221160774|gb|ACM01754.1| Crossover junction endodeoxyribonuclease ruvC [Rhodobacter
           sphaeroides KD131]
 gi|332276714|gb|EGJ22029.1| Holliday junction resolvase [Rhodobacter sphaeroides WS8N]
          Length = 168

 Score =  212 bits (540), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 85/157 (54%), Positives = 110/157 (70%), Gaps = 1/157 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPGLR  GWG++DV+G  L  V++G   S     LA RL  L+  LTDV+  ++
Sbjct: 1   MRVLGIDPGLRNMGWGVIDVSGTRLAHVANGICHSDSG-DLAHRLLSLHGQLTDVLARFQ 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ AAVE  FVNKD VATLKLGQAR IA+L PA A + V EYAPN +KK V+GVGH  K+
Sbjct: 60  PDTAAVEHTFVNKDGVATLKLGQARGIALLVPAQAGLAVGEYAPNAVKKTVVGVGHAAKE 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSG 161
           QI  M+++ +P     G DAADALA+A+CHA+H  S 
Sbjct: 120 QIQHMVRLHLPGVHLAGPDAADALAVAICHAHHVQSS 156


>gi|157375169|ref|YP_001473769.1| crossover junction endodeoxyribonuclease [Shewanella sediminis
           HAW-EB3]
 gi|189046082|sp|A8FUW8|RUVC_SHESH RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|157317543|gb|ABV36641.1| Crossover junction endodeoxyribonuclease [Shewanella sediminis
           HAW-EB3]
          Length = 173

 Score =  212 bits (540), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 60/154 (38%), Positives = 101/154 (65%), Gaps = 1/154 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+G+DPG R TG+G++   G +  ++ SG I +     L +RL Q+++G++++I+ ++P+
Sbjct: 4   ILGVDPGSRITGYGVIQCIGRHQTYLGSGCIRT-ASDDLPYRLKQIFDGVSEIIRQYQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E+VF+ K+A + LKLGQAR  AI++   A +PV+EY+   IK AV+G G   K Q+
Sbjct: 63  EFAIERVFMAKNADSALKLGQARGAAIVAATNADLPVAEYSATQIKSAVVGTGKAQKSQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
             M++ ++        DAADAL +A+CH + + S
Sbjct: 123 QHMVQQILKLPAAPQADAADALGVAICHFHTSQS 156


>gi|148653235|ref|YP_001280328.1| Holliday junction resolvase [Psychrobacter sp. PRwf-1]
 gi|172048526|sp|A5WFD7|RUVC_PSYWF RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|148572319|gb|ABQ94378.1| Holliday junction endonuclease RuvC [Psychrobacter sp. PRwf-1]
          Length = 194

 Score =  212 bits (540), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 64/159 (40%), Positives = 95/159 (59%), Gaps = 6/159 (3%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW--- 63
           IIGIDPG R TG+GI+   GD L ++ +GTI +  +  +  RL ++++GLT + +     
Sbjct: 4   IIGIDPGSRMTGYGIIHQKGDTLRYLDAGTIRTDTK-EMPERLKRIFQGLTRITQYHLKY 62

Query: 64  --RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
              P  AAVEQVF+ ++  + LKLGQAR  AI +     + VSEY    IK++V G G  
Sbjct: 63  SDEPIHAAVEQVFMAENPDSALKLGQARGAAIAALVALDLEVSEYTARQIKQSVCGYGAA 122

Query: 122 DKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           DK Q+  M+  ++       +DAAD LA A+CHA+ ++S
Sbjct: 123 DKVQVQEMVCRILKLDVTPQQDAADGLACAICHAHSSHS 161


>gi|89068048|ref|ZP_01155465.1| Holliday junction resolvase [Oceanicola granulosus HTCC2516]
 gi|89046287|gb|EAR52344.1| Holliday junction resolvase [Oceanicola granulosus HTCC2516]
          Length = 169

 Score =  212 bits (540), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 82/159 (51%), Positives = 109/159 (68%), Gaps = 1/159 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R+IGIDPGLR TGWG+++  G  L  V++G   S   ++LA RL  L+  L +V +   
Sbjct: 1   MRVIGIDPGLRHTGWGLIESVGSKLRHVANGVCHSE-GETLAARLLSLHLQLAEVFRQHA 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           PE AAVEQ FVN+D   TLKLGQAR IA+L PA A + V EYAPN +KK+V+GVGH DK 
Sbjct: 60  PEAAAVEQTFVNRDGAGTLKLGQARGIAMLVPAQAGLEVGEYAPNAVKKSVVGVGHADKS 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYY 163
           Q+  M+++ +P     G DAADALA+A+CH +H  SG +
Sbjct: 120 QVAHMVRVHLPGVALAGPDAADALAVAICHVHHLQSGRH 158


>gi|119383448|ref|YP_914504.1| crossover junction endodeoxyribonuclease RuvC [Paracoccus
           denitrificans PD1222]
 gi|166233277|sp|A1AZW4|RUVC_PARDP RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|119373215|gb|ABL68808.1| crossover junction endodeoxyribonuclease RuvC [Paracoccus
           denitrificans PD1222]
          Length = 164

 Score =  211 bits (539), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 85/164 (51%), Positives = 110/164 (67%), Gaps = 1/164 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++IIGIDPGLR  GWG++ V G  L  + +G + S     L  RL  LY GL  VI    
Sbjct: 1   MKIIGIDPGLRNMGWGVIAVEGPRLRHLDNGIVHSEAG-DLGPRLAALYRGLCAVIVRHA 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ AAVEQ FVNKDA+ TLKLGQAR IA+L+PA A + + EYAPN +KKAV+GVGH  K+
Sbjct: 60  PDAAAVEQTFVNKDALGTLKLGQARGIALLAPAEAGLEIGEYAPNAVKKAVVGVGHAAKE 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
           QI  M++ ++P   F G DAADALA+A+CHA+H      +I + 
Sbjct: 120 QIQHMVRFMLPGVEFAGPDAADALAVAICHAHHLQGRALRIKAS 163


>gi|160934124|ref|ZP_02081511.1| hypothetical protein CLOLEP_02987 [Clostridium leptum DSM 753]
 gi|156866797|gb|EDO60169.1| hypothetical protein CLOLEP_02987 [Clostridium leptum DSM 753]
          Length = 170

 Score =  211 bits (538), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 83/159 (52%), Gaps = 1/159 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + I+GIDPG    G+G +         +  G I +      + RL  +Y+ + ++I+  R
Sbjct: 1   MIILGIDPGYAIVGYGALRFERGQYRAIGFGAITTEAGMDFSARLQYIYDNMMEMIRQCR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  A+E+++ + +    + + +AR I +L+   + +P+ EY P  +K AV G G   K 
Sbjct: 61  PDAVAIEKLYFHTNQKTVIHVAEARGIILLAAQKSGVPIFEYTPLQVKTAVTGYGRAHKP 120

Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHANSGY 162
           Q+  M   L+      K  D ADALA+A+CHA+ + S +
Sbjct: 121 QVMEMTTRLLKLKEVPKPDDTADALAVAICHAHASGSRF 159


>gi|114771194|ref|ZP_01448614.1| Holliday junction resolvase [alpha proteobacterium HTCC2255]
 gi|114548119|gb|EAU51006.1| Holliday junction resolvase [alpha proteobacterium HTCC2255]
          Length = 170

 Score =  211 bits (538), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 88/155 (56%), Positives = 110/155 (70%), Gaps = 1/155 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPGLR  GWG+VDV G  +  ++ G   S     LA RL +L+  LTDVIK ++
Sbjct: 1   MRVLGIDPGLRNLGWGVVDVLGPKITHIADGVCKSSTGT-LAERLLELHNQLTDVIKKYK 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P  +AVE+ FVNKD   TLKLGQAR I +L+PA A + VSEYAPNTIKK V+GVGH DKK
Sbjct: 60  PTTSAVEKTFVNKDGAGTLKLGQARGICLLAPAQAGLDVSEYAPNTIKKVVVGVGHADKK 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHAN 159
           Q+  M++M  P   F G DA DALAIA+CHA+HA 
Sbjct: 120 QVEHMVQMQFPGMSFVGPDAVDALAIALCHAHHAQ 154


>gi|311745860|ref|ZP_07719645.1| crossover junction endodeoxyribonuclease RuvC [Algoriphagus sp.
           PR1]
 gi|126576063|gb|EAZ80341.1| crossover junction endodeoxyribonuclease RuvC [Algoriphagus sp.
           PR1]
          Length = 191

 Score =  211 bits (538), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 51/167 (30%), Positives = 91/167 (54%), Gaps = 8/167 (4%)

Query: 1   MRKSIR-------IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLY 53
           M K ++       I+GIDPG    G+G++   G     +  G I      +   +L +++
Sbjct: 1   MSKEVKNPTKEKIILGIDPGTNVMGYGLIKTEGKKYELLQYGVIHLKKYGTHELKLKKIF 60

Query: 54  EGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKK 113
           E ++ +I+ + P+  A+E  F   +  + LKLG+A+ +A+ +     IP++EY+P  +K+
Sbjct: 61  ERISGIIEEFLPDSVALEAPFYGVNVQSMLKLGRAQGVAMAAALAREIPITEYSPKKVKQ 120

Query: 114 AVIGVGHGDKKQIHMMLKMLM-PESFFKGKDAADALAIAVCHAYHAN 159
           +V G G+  K+Q+  ML+ L   +   K  DA DALA+A+CH +H  
Sbjct: 121 SVTGNGNASKEQVAAMLQTLFDLKELPKMLDATDALAVALCHHFHEG 167


>gi|296113753|ref|YP_003627691.1| crossover junction endodeoxyribonuclease RuvC [Moraxella
           catarrhalis RH4]
 gi|295921447|gb|ADG61798.1| crossover junction endodeoxyribonuclease RuvC [Moraxella
           catarrhalis RH4]
 gi|326562102|gb|EGE12430.1| Holliday junction resolvase [Moraxella catarrhalis 7169]
 gi|326564533|gb|EGE14759.1| Holliday junction resolvase [Moraxella catarrhalis 46P47B1]
 gi|326565717|gb|EGE15880.1| Holliday junction resolvase [Moraxella catarrhalis 12P80B1]
 gi|326566285|gb|EGE16437.1| Holliday junction resolvase [Moraxella catarrhalis 103P14B1]
 gi|326567063|gb|EGE17185.1| Holliday junction resolvase [Moraxella catarrhalis BC1]
 gi|326568327|gb|EGE18407.1| Holliday junction resolvase [Moraxella catarrhalis BC7]
 gi|326572228|gb|EGE22223.1| Holliday junction resolvase [Moraxella catarrhalis BC8]
 gi|326574570|gb|EGE24510.1| Holliday junction resolvase [Moraxella catarrhalis O35E]
 gi|326574826|gb|EGE24756.1| Holliday junction resolvase [Moraxella catarrhalis 101P30B1]
 gi|326576150|gb|EGE26065.1| Holliday junction resolvase [Moraxella catarrhalis CO72]
          Length = 196

 Score =  211 bits (538), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 62/159 (38%), Positives = 95/159 (59%), Gaps = 6/159 (3%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR-- 64
           IIGIDPG R TG+GI+    D L F+ +GTI +     +  R+ Q++ G++ ++ +++  
Sbjct: 4   IIGIDPGSRLTGYGIISTNNDQLTFLDAGTIRTNSS-DITERIAQIFAGVSRIVNHYQKY 62

Query: 65  ---PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
              P +AA+EQVF+  +  + LKLGQAR  AI +     + VSEY    IK+AV G G  
Sbjct: 63  SNKPIQAAIEQVFMANNPDSALKLGQARGAAIAALTAQDLQVSEYTARQIKQAVCGYGAA 122

Query: 122 DKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           DK+Q+  M+  ++        DAAD LA A+CHA+ ++S
Sbjct: 123 DKEQVTAMVCRILSLDIIPQADAADGLACAICHAHSSHS 161


>gi|332828729|gb|EGK01421.1| crossover junction endodeoxyribonuclease ruvC [Dysgonomonas gadei
           ATCC BAA-286]
          Length = 187

 Score =  210 bits (537), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 52/163 (31%), Positives = 87/163 (53%), Gaps = 3/163 (1%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           + K   I+GIDPG +  G+GI+ V  +    ++ G +          +L +++E +  +I
Sbjct: 2   IEKERIILGIDPGTQVMGYGILRVVNNKPEMLAMGILQLSKYDDHYLKLRRIFERIISLI 61

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             + P+E A+E  F  K+  + LKLG+A+ +A+ +     IP+ EYAP  IK ++ G G 
Sbjct: 62  DEFLPDELAIEAPFFGKNVQSMLKLGRAQGVAMAAALSRDIPIFEYAPLKIKMSITGNGR 121

Query: 121 GDKKQIHMMLKMLMP---ESFFKGKDAADALAIAVCHAYHANS 160
             K+Q+  ML+  +    E+     DA D LA AVCH +  N+
Sbjct: 122 AAKEQVAYMLQNFLKIPDENMLPQMDATDGLAAAVCHFFQTNN 164


>gi|322382933|ref|ZP_08056765.1| hypothetical protein PL1_0639 [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321153053|gb|EFX45511.1| hypothetical protein PL1_0639 [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 155

 Score =  210 bits (537), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 49/144 (34%), Positives = 83/144 (57%), Gaps = 1/144 (0%)

Query: 17  TGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVN 76
            G+G +D     L  V  G+I +        RL Q+YE   +++  ++P+  A E++F N
Sbjct: 1   MGFGFIDKVSSRLVPVQYGSIQTEAYTDPGLRLKQVYEATGELLDKYKPDAVAFEKLFFN 60

Query: 77  KDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPE 136
           ++      +GQAR + IL+     +P++EY P  +K+AV+G G  +KKQ+  M++M +  
Sbjct: 61  RNVTTAFSVGQARGVMILASVQRGLPIAEYTPLQVKQAVVGYGKAEKKQVQEMVRMFLKL 120

Query: 137 SF-FKGKDAADALAIAVCHAYHAN 159
           S   K  D ADALA+A+CHA+ ++
Sbjct: 121 SAVPKPDDVADALAVAICHAHSSS 144


>gi|256420289|ref|YP_003120942.1| crossover junction endodeoxyribonuclease RuvC [Chitinophaga
           pinensis DSM 2588]
 gi|256035197|gb|ACU58741.1| crossover junction endodeoxyribonuclease RuvC [Chitinophaga
           pinensis DSM 2588]
          Length = 202

 Score =  210 bits (537), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 54/160 (33%), Positives = 91/160 (56%), Gaps = 1/160 (0%)

Query: 2   RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
            KS  I+GIDPG    G+G++ V G     +    +     +    RL  ++  + ++I+
Sbjct: 19  NKSKIILGIDPGTLVMGYGLILVEGSKASLLDMNVLKLSRHKDHYERLQLIHARVHELIR 78

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
             +P   A+E  F  K+  + LKLG+A+ +AI +   A +PV+EYAP  +K+++ G G+ 
Sbjct: 79  EHKPVSCAIEAPFFGKNVQSMLKLGRAQGVAIATAMQAGVPVTEYAPKKVKQSITGNGNA 138

Query: 122 DKKQIHMMLKMLMP-ESFFKGKDAADALAIAVCHAYHANS 160
           DK+QI  ML+ ++      +  DA+DALA+AVCH +  +S
Sbjct: 139 DKEQIWQMLQRILHFNERPEFLDASDALAVAVCHFFQESS 178


>gi|170726919|ref|YP_001760945.1| Holliday junction resolvase [Shewanella woodyi ATCC 51908]
 gi|238688665|sp|B1KHG5|RUVC_SHEWM RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|169812266|gb|ACA86850.1| crossover junction endodeoxyribonuclease RuvC [Shewanella woodyi
           ATCC 51908]
          Length = 173

 Score =  210 bits (537), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 59/154 (38%), Positives = 99/154 (64%), Gaps = 1/154 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G +  ++ SG I +       +RL Q+++G++++I+ ++P 
Sbjct: 4   ILGIDPGSRITGYGVIQCNGRSQIYLGSGCIRT-ASDDFPYRLKQIFDGVSEIIRQYQPN 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+E+VF+ K+A + LKLGQAR  AI++   A +PV+EY+   IK AV+G G  +K Q+
Sbjct: 63  FFAIERVFLAKNADSALKLGQARGAAIVAATNADLPVAEYSATQIKSAVVGTGKAEKTQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
             M++ ++        DAADAL +A+CH + + S
Sbjct: 123 QHMVQQILKLPAAPQADAADALGVAICHFHTSQS 156


>gi|332884766|gb|EGK05022.1| crossover junction endodeoxyribonuclease ruvC [Dysgonomonas mossii
           DSM 22836]
          Length = 186

 Score =  210 bits (537), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 51/163 (31%), Positives = 86/163 (52%), Gaps = 3/163 (1%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           ++K   I+GIDPG +  G+GI+ V  +    ++ G +          +L +++E +  +I
Sbjct: 2   IQKERIILGIDPGTQVMGYGILRVVNNKPELLAMGVLQLSKYDDHYLKLRRIFERIIGLI 61

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             + P+E A+E  F  K+  + LKLG+A+ +A+ +     IP+ EYAP  IK ++ G G 
Sbjct: 62  DEFLPDELAIEAPFFGKNVQSMLKLGRAQGVAMAAALSRDIPIFEYAPLKIKMSITGNGR 121

Query: 121 GDKKQIHMMLKMLMPES---FFKGKDAADALAIAVCHAYHANS 160
             K+Q+  ML+  +           DA D LA AVCH +  N+
Sbjct: 122 AAKEQVAYMLQHFLHIPDSNMPTQMDATDGLAAAVCHYFQTNN 164


>gi|257453384|ref|ZP_05618679.1| crossover junction endodeoxyribonuclease RuvC [Enhydrobacter
           aerosaccus SK60]
 gi|257449136|gb|EEV24084.1| crossover junction endodeoxyribonuclease RuvC [Enhydrobacter
           aerosaccus SK60]
          Length = 200

 Score =  210 bits (537), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 63/167 (37%), Positives = 100/167 (59%), Gaps = 6/167 (3%)

Query: 8   IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVS-CVRQSLAFRLCQLYEGLTDVIKNWR-- 64
           IGIDPG R TG+GI+ ++GD L  + +GTI +    +++  RL ++++G++ ++++++  
Sbjct: 5   IGIDPGSRLTGYGIIRLSGDKLEHLDAGTIHAYSQGETMPERLKRIFDGISRIVEHYQKY 64

Query: 65  ---PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
              P  AA+EQVF+  +    LKLGQAR  AI +     + V+EY    IK+AV G G  
Sbjct: 65  TNEPMTAAIEQVFMASNPDTALKLGQARGAAIAAMVAKDLQVAEYTARQIKQAVCGYGAA 124

Query: 122 DKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
           DK+QI +M+  L+        DAAD LA A+CHAYH+ +    +   
Sbjct: 125 DKEQIQLMVMRLLSLEIQPQADAADGLACAICHAYHSQTLNKLLGGA 171


>gi|307294017|ref|ZP_07573861.1| crossover junction endodeoxyribonuclease RuvC [Sphingobium
           chlorophenolicum L-1]
 gi|306880168|gb|EFN11385.1| crossover junction endodeoxyribonuclease RuvC [Sphingobium
           chlorophenolicum L-1]
          Length = 163

 Score =  210 bits (537), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 68/158 (43%), Positives = 103/158 (65%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + I+G+DPGL  TGWG++   G+ L  +++G I +    +LA RL  L   LTD+I   +
Sbjct: 1   MIILGLDPGLGTTGWGLIAADGNRLTHIANGQIKTDSDMALASRLLVLDLALTDLILEHQ 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P  AAVE+VF+N +  +TLKLGQAR + +L+ + + + V EYA   +KK+V+GVG+  K+
Sbjct: 61  PNSAAVEEVFLNVNPQSTLKLGQARGVILLAASRSGMEVGEYAARLVKKSVVGVGNASKE 120

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGY 162
           Q+H M+  L+P     G DA+DALA+A+ HA+H  S  
Sbjct: 121 QVHAMVSRLLPGVKVAGPDASDALAVAITHAHHLASAR 158


>gi|332978500|gb|EGK15211.1| crossover junction endoribonuclease subunit C [Psychrobacter sp.
           1501(2011)]
          Length = 194

 Score =  210 bits (536), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 64/159 (40%), Positives = 94/159 (59%), Gaps = 6/159 (3%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW--- 63
           IIGIDPG R TG+GI+   GD L ++ +GTI +  +  +  RL +++ G+T + +     
Sbjct: 4   IIGIDPGSRMTGYGIIHQKGDTLRYLDAGTIRTDTK-EMPERLKRIFNGITRITEYHLKY 62

Query: 64  --RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
              P  AAVEQVF+ ++  + LKLGQAR  AI +     + VSEY    IK+AV G G  
Sbjct: 63  SDEPIHAAVEQVFMAENPDSALKLGQARGAAIAALVALDLEVSEYTARQIKQAVCGYGAA 122

Query: 122 DKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           DK Q+  M+  ++       +DAAD LA A+CHA+ ++S
Sbjct: 123 DKIQVQEMVCRILKLDVTPQQDAADGLACAICHAHSSHS 161


>gi|303235799|ref|ZP_07322406.1| crossover junction endodeoxyribonuclease RuvC [Prevotella disiens
           FB035-09AN]
 gi|302484246|gb|EFL47234.1| crossover junction endodeoxyribonuclease RuvC [Prevotella disiens
           FB035-09AN]
          Length = 192

 Score =  210 bits (536), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 54/161 (33%), Positives = 85/161 (52%), Gaps = 3/161 (1%)

Query: 2   RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           + +  I+GIDPG    G+G++   G+    V  G I     +    RL +++E +T +I+
Sbjct: 7   KPARIILGIDPGTNVMGYGVIQAKGNKAEMVVMGVIDMRKEKDPYLRLGKIFERVTGIIE 66

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
            + P+E A+E  F  K+  + LKLG+A+ +AI +     +P+ EYAP  IK A+ G G  
Sbjct: 67  EYLPDEMAIEAPFFGKNIQSMLKLGRAQGVAIAAAIQRDVPIHEYAPLKIKMAITGNGQA 126

Query: 122 DKKQIHMMLKMLMPE---SFFKGKDAADALAIAVCHAYHAN 159
            K Q+  ML+ L+        +  DA DAL  A CH   +N
Sbjct: 127 SKNQVAGMLQRLLHLKDDEMPQFMDATDALGAAYCHFLQSN 167


>gi|255012370|ref|ZP_05284496.1| Holliday junction resolvase [Bacteroides sp. 2_1_7]
 gi|256839216|ref|ZP_05544726.1| crossover junction endodeoxyribonuclease RuvC [Parabacteroides sp.
           D13]
 gi|262382336|ref|ZP_06075473.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides sp.
           2_1_33B]
 gi|301308455|ref|ZP_07214409.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides sp.
           20_3]
 gi|256740135|gb|EEU53459.1| crossover junction endodeoxyribonuclease RuvC [Parabacteroides sp.
           D13]
 gi|262295214|gb|EEY83145.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides sp.
           2_1_33B]
 gi|300833925|gb|EFK64541.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides sp.
           20_3]
          Length = 185

 Score =  210 bits (536), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 55/163 (33%), Positives = 88/163 (53%), Gaps = 3/163 (1%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M K   I+GIDPG    G+GI+ + G+     + G +     +    RL +++E +  +I
Sbjct: 1   MIKDRIILGIDPGTIVMGYGILKIEGNKPKLEAMGILQLNKYEDHYLRLRKIFERVLALI 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             + P+E A+E  F  K+  + LKLG+A+ +A+ +     IP+ EYAP  IK ++ G G+
Sbjct: 61  DQYHPDELAIEAPFFGKNVQSMLKLGRAQGVAMAAALERDIPIFEYAPLKIKLSITGNGN 120

Query: 121 GDKKQIHMMLKMLMP---ESFFKGKDAADALAIAVCHAYHANS 160
             K+Q+  ML+  +    ES     DA D LA AVCH +  N+
Sbjct: 121 AAKEQVAGMLQRYLKIPDESMLPQLDATDGLAAAVCHYFQTNN 163


>gi|294013343|ref|YP_003546803.1| crossover junction endodeoxyribonuclease [Sphingobium japonicum
           UT26S]
 gi|292676673|dbj|BAI98191.1| crossover junction endodeoxyribonuclease [Sphingobium japonicum
           UT26S]
          Length = 163

 Score =  210 bits (536), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 68/158 (43%), Positives = 104/158 (65%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + I+G+DPGL  TGWG++   G+ L  +++G I +    +LA RL  L   LTD+I   +
Sbjct: 1   MIILGLDPGLGTTGWGLIAADGNRLTHIANGQIKTDSDMALASRLLVLDLALTDLILEHQ 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P  AAVE+VF+N +  +TLKLGQAR + +L+ + + + V EYA   +KK+V+GVG+  K+
Sbjct: 61  PNGAAVEEVFLNVNPQSTLKLGQARGVVLLAASRSGMEVGEYAARLVKKSVVGVGNASKE 120

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGY 162
           Q+H M+  L+P +   G DA+DALA+A+ HA+H  S  
Sbjct: 121 QVHAMVSRLLPGAKVAGPDASDALAVAITHAHHLASAR 158


>gi|171057222|ref|YP_001789571.1| Holliday junction resolvase [Leptothrix cholodnii SP-6]
 gi|170774667|gb|ACB32806.1| crossover junction endodeoxyribonuclease RuvC [Leptothrix cholodnii
           SP-6]
          Length = 183

 Score =  210 bits (536), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 62/157 (39%), Positives = 97/157 (61%), Gaps = 2/157 (1%)

Query: 6   RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQ--SLAFRLCQLYEGLTDVIKNW 63
           RI+GIDPGL  TG+G++DV G  L +V+SGT+ +       L  R+  ++EG+ +V+  +
Sbjct: 3   RILGIDPGLATTGFGVIDVEGQALRYVASGTVHTREADIGDLPGRIKLIFEGVREVMATY 62

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +P  A++E VFVN +  +TL LGQAR  A+ +     + V+EY    +KKAV+G GH  K
Sbjct: 63  QPTCASIEIVFVNVNPQSTLLLGQARGAALAALVTGGLAVTEYTALQMKKAVVGSGHARK 122

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           +Q+  M+  L+       +DA+DAL +A+ HA+   S
Sbjct: 123 EQVQEMVMRLLQLPGRPNQDASDALGLAITHAHAGGS 159


>gi|93005501|ref|YP_579938.1| crossover junction endodeoxyribonuclease RuvC [Psychrobacter
           cryohalolentis K5]
 gi|123264700|sp|Q1QCZ9|RUVC_PSYCK RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|92393179|gb|ABE74454.1| crossover junction endodeoxyribonuclease RuvC [Psychrobacter
           cryohalolentis K5]
          Length = 194

 Score =  210 bits (535), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 64/159 (40%), Positives = 95/159 (59%), Gaps = 6/159 (3%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW--- 63
           IIGIDPG R TG+GI+   GD L ++ SGTI +  +  +  RL +++ GLT + ++    
Sbjct: 4   IIGIDPGSRMTGYGILQQTGDKLTYIDSGTIRTDTK-EMPERLKRIFNGLTRITQHHLKY 62

Query: 64  --RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
              P   A+EQVF+ ++  + LKLGQAR  AI +     + VSEY    IK+AV G G  
Sbjct: 63  ADEPIYTAIEQVFMAENPDSALKLGQARGAAIAAMVALDLEVSEYTARQIKQAVCGYGAA 122

Query: 122 DKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
            K+Q+  M+  ++   F   +DAAD LA A+CHA+ ++S
Sbjct: 123 AKEQVQEMVCRILTLDFVPQQDAADGLACAICHAHSSHS 161


>gi|284048864|ref|YP_003399203.1| crossover junction endodeoxyribonuclease RuvC [Acidaminococcus
           fermentans DSM 20731]
 gi|283953085|gb|ADB47888.1| crossover junction endodeoxyribonuclease RuvC [Acidaminococcus
           fermentans DSM 20731]
          Length = 165

 Score =  210 bits (535), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 52/147 (35%), Positives = 84/147 (57%), Gaps = 1/147 (0%)

Query: 8   IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEE 67
           +GIDPG    G+G+V +    L  V  G + +        RL ++YE LTD+I  + P+ 
Sbjct: 4   LGIDPGTAICGYGLVRLERSRLIPVHYGAVFTDKDMLPERRLNKIYEELTDLIDRYHPDF 63

Query: 68  AAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIH 127
            +VE++F N++    + +G+AR + +L+ A A IPV  Y P  +K+A+ G G  +K+Q+ 
Sbjct: 64  MSVEKLFFNRNVTTAIAVGEARGVILLTAARAGIPVYGYTPIQVKQAITGTGRANKEQVT 123

Query: 128 MMLKMLMP-ESFFKGKDAADALAIAVC 153
            M++ L+  E   K  D ADALAI + 
Sbjct: 124 YMVQKLLHIEEKPKPDDVADALAIGIT 150


>gi|113970238|ref|YP_734031.1| Holliday junction resolvase [Shewanella sp. MR-4]
 gi|114047573|ref|YP_738123.1| Holliday junction resolvase [Shewanella sp. MR-7]
 gi|123030604|sp|Q0HUY9|RUVC_SHESR RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|123325053|sp|Q0HIZ3|RUVC_SHESM RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|113884922|gb|ABI38974.1| crossover junction endodeoxyribonuclease RuvC [Shewanella sp. MR-4]
 gi|113889015|gb|ABI43066.1| crossover junction endodeoxyribonuclease RuvC [Shewanella sp. MR-7]
          Length = 173

 Score =  210 bits (535), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 64/162 (39%), Positives = 105/162 (64%), Gaps = 2/162 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+G+DPG R TG+G++   G    ++ SG I +   + L  RL Q+++G++++I+ ++P+
Sbjct: 4   ILGVDPGSRITGYGVIQCQGRQQLYLGSGCIRT-SGEDLPLRLKQIFDGISEIIRQYQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E+VF+ K+A + LKLGQAR  AI++  +A +PV+EY+   IK AV+G G   K+Q+
Sbjct: 63  EFAIERVFLAKNADSALKLGQARGAAIVAATVANLPVAEYSATQIKNAVVGTGRAKKEQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
             M++ L+        DAADAL +AVCH YH N     ++ +
Sbjct: 123 QHMIQQLLKLPAAPQADAADALGVAVCH-YHTNQSLVALSGR 163


>gi|239813937|ref|YP_002942847.1| Holliday junction resolvase [Variovorax paradoxus S110]
 gi|259495697|sp|C5CNG5|RUVC_VARPS RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|239800514|gb|ACS17581.1| crossover junction endodeoxyribonuclease RuvC [Variovorax paradoxus
           S110]
          Length = 182

 Score =  209 bits (534), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 67/166 (40%), Positives = 98/166 (59%), Gaps = 3/166 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCV--RQSLAFRLCQLYEGLTDVIKN 62
           +RI+GIDPGL  TG+G+VD  G  L +V+SGTI +      +L  RL  L++G+ ++   
Sbjct: 1   MRILGIDPGLLTTGFGVVDSDGHALSYVASGTISTRHLGSGNLPARLKVLFDGIAEIAAR 60

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
           ++P+ +AVE +FVN +  +TL LGQAR   + S   + + V+EY    +KKAV G G   
Sbjct: 61  YQPDASAVEIIFVNVNPQSTLLLGQARGACVTSLVNSNLSVAEYTALQMKKAVAGHGQAA 120

Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
           K Q+  M+K L+      G DAADAL IA+ HA    S   ++A  
Sbjct: 121 KAQVQEMVKRLLDLPGLPGADAADALGIAITHAQVGRS-MARLAEA 165


>gi|332530370|ref|ZP_08406315.1| Holliday junction resolvase [Hylemonella gracilis ATCC 19624]
 gi|332040181|gb|EGI76562.1| Holliday junction resolvase [Hylemonella gracilis ATCC 19624]
          Length = 179

 Score =  209 bits (534), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 61/164 (37%), Positives = 100/164 (60%), Gaps = 3/164 (1%)

Query: 8   IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQ--SLAFRLCQLYEGLTDVIKNWRP 65
           +GIDPGLR TG+G+++  G +L +V+SGTI +   +  +L  RL  L++G+T+V+  ++P
Sbjct: 1   MGIDPGLRTTGFGVIEAQGQHLRYVASGTISTAKEEQGNLPARLKVLFDGITEVVTRYQP 60

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
            +AAVE VFVN +  +TL LGQAR   + +    ++PV+EY    +K+AV G G   K +
Sbjct: 61  TQAAVEIVFVNVNPQSTLLLGQARGACLTALVNCKLPVAEYTALQMKQAVAGHGRAAKAE 120

Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQD 169
           +  M++ L+      G DAADAL +A+  A+   +   ++    
Sbjct: 121 VQAMVQRLLKLPGLPGPDAADALGLAITQAHAGLT-LARLGEAS 163


>gi|150010366|ref|YP_001305109.1| Holliday junction resolvase [Parabacteroides distasonis ATCC 8503]
 gi|298374762|ref|ZP_06984720.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides sp.
           3_1_19]
 gi|149938790|gb|ABR45487.1| crossover junction endodeoxyribonuclease RuvC [Parabacteroides
           distasonis ATCC 8503]
 gi|298269130|gb|EFI10785.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides sp.
           3_1_19]
          Length = 185

 Score =  209 bits (534), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 54/163 (33%), Positives = 88/163 (53%), Gaps = 3/163 (1%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M K   I+GIDPG    G+GI+ + G+     + G +     +    RL +++E +  +I
Sbjct: 1   MIKDRIILGIDPGTIVMGYGILKIEGNKPKLEAMGILQLNKYEDHYLRLRKIFERVLALI 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             + P+E A+E  F  K+  + LKLG+A+ +A+ +     +P+ EYAP  IK ++ G G+
Sbjct: 61  DQYHPDELAIEAPFFGKNVQSMLKLGRAQGVAMAAALERDVPIFEYAPLKIKLSITGNGN 120

Query: 121 GDKKQIHMMLKMLMP---ESFFKGKDAADALAIAVCHAYHANS 160
             K+Q+  ML+  +    ES     DA D LA AVCH +  N+
Sbjct: 121 AAKEQVAGMLQRYLKIPDESMLPQLDATDGLAAAVCHYFQTNN 163


>gi|328955750|ref|YP_004373083.1| crossover junction endodeoxyribonuclease RuvC [Coriobacterium
           glomerans PW2]
 gi|328456074|gb|AEB07268.1| crossover junction endodeoxyribonuclease RuvC [Coriobacterium
           glomerans PW2]
          Length = 174

 Score =  209 bits (534), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 55/153 (35%), Positives = 90/153 (58%), Gaps = 1/153 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + ++GIDPGL  TGWG+V+    ++   + G I +     LA RL ++ + L  V++ +R
Sbjct: 1   MVVLGIDPGLANTGWGVVEERSGDVRCRAYGCIQTASGSPLAVRLRRIADDLRAVVERYR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ AA+E ++   +  + +    AR  A+++ +LA + V EY P  IK+AV+G G  DK 
Sbjct: 61  PQTAAIEDIYFGVNVRSAIPTAHARGAALVACSLAGMDVGEYTPMQIKQAVVGTGAADKA 120

Query: 125 QIHMMLKMLMPES-FFKGKDAADALAIAVCHAY 156
           QI  M++ L+      +   AADALA A+CHA+
Sbjct: 121 QIAYMVRRLLQLDREPRPDHAADALACAICHAH 153


>gi|58040112|ref|YP_192076.1| Holliday junction resolvase [Gluconobacter oxydans 621H]
 gi|81557004|sp|Q5FQC6|RUVC_GLUOX RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|58002526|gb|AAW61420.1| Crossover junction endodeoxyribonuclease RuvC [Gluconobacter
           oxydans 621H]
          Length = 168

 Score =  209 bits (534), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 72/149 (48%), Positives = 108/149 (72%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           IR++GIDPGLR  GWGI+DV G++L  V+SG I +   +S+  RLC+L+  L  +I+ + 
Sbjct: 2   IRLMGIDPGLRFMGWGIIDVDGNHLKHVASGVIGTDGSESVPLRLCELHGALKKLIREYA 61

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P EAAVE+ +VN++  +TLKLG AR +A+L+PA   +PV+EY   T+KK+V+G G   K+
Sbjct: 62  PAEAAVEETYVNRNGSSTLKLGYARGVALLTPAYEGLPVAEYGAMTVKKSVVGTGSASKE 121

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVC 153
           Q+ MM+K L+P +  +  DA+DALA+A+C
Sbjct: 122 QVTMMVKRLLPGAEIRKADASDALAVAIC 150


>gi|319791676|ref|YP_004153316.1| crossover junction endodeoxyribonuclease ruvc [Variovorax paradoxus
           EPS]
 gi|315594139|gb|ADU35205.1| crossover junction endodeoxyribonuclease RuvC [Variovorax paradoxus
           EPS]
          Length = 182

 Score =  209 bits (534), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 67/166 (40%), Positives = 98/166 (59%), Gaps = 3/166 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCV--RQSLAFRLCQLYEGLTDVIKN 62
           +RI+GIDPGL  TG+G+VD  G  L +V+SGTI +      +L  RL  L++G+ ++   
Sbjct: 1   MRILGIDPGLLTTGFGVVDADGHALRYVASGTISTRHLGSGNLPARLKVLFDGIAEITAR 60

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
           ++P+ +AVE +FVN +  +TL LGQAR   + S   + + V+EY    +KKAV G G   
Sbjct: 61  YQPDASAVEIIFVNVNPQSTLLLGQARGACVTSLVNSNLTVAEYTALQMKKAVAGHGQAA 120

Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
           K Q+  M+K L+      G DAADAL IA+ HA    S   ++A  
Sbjct: 121 KAQVQEMVKRLLDLPGLPGADAADALGIAITHAQVGRS-MARLAEA 165


>gi|300309760|ref|YP_003773852.1| Holliday junction resolvasome, endonuclease subunit [Herbaspirillum
           seropedicae SmR1]
 gi|300072545|gb|ADJ61944.1| Holliday junction resolvasome, endonuclease subunit protein
           [Herbaspirillum seropedicae SmR1]
          Length = 180

 Score =  209 bits (533), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 63/155 (40%), Positives = 96/155 (61%), Gaps = 1/155 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++I+GIDPGLR TG+G++   G+ L +++SGTI +     L  RL  +   + +V+K++ 
Sbjct: 1   MKILGIDPGLRTTGFGVIHKQGNTLSYIASGTIKTP-DGDLPSRLKVILASVGEVVKSYT 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ AA+E+VFVN +  +TL LGQAR  AI +   A + V+EY    +K+AV G G   K 
Sbjct: 60  PDCAAIEKVFVNVNPHSTLLLGQARGAAICALVAADLAVAEYTALQVKQAVAGHGRAQKA 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHAN 159
           Q+  M+  L+      G DAADAL +A+CHA+   
Sbjct: 120 QVQEMVARLLKLPGLPGTDAADALGVAICHAHGGG 154


>gi|312962760|ref|ZP_07777248.1| Crossover junction endodeoxyribonuclease [Pseudomonas fluorescens
           WH6]
 gi|311282977|gb|EFQ61570.1| Crossover junction endodeoxyribonuclease [Pseudomonas fluorescens
           WH6]
          Length = 182

 Score =  209 bits (533), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 62/154 (40%), Positives = 97/154 (62%), Gaps = 1/154 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G+V        +V+SG I +     LA RL  +Y G+ +VI+ + P 
Sbjct: 12  ILGIDPGSRITGFGVVQHTPRGCVYVASGCIRTGAG-ELAERLQIVYRGVREVIQTYGPV 70

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
              +E+VF+ K+A + LKLGQAR  AI++ A   + ++EY    +K+AV+G G  +K+Q+
Sbjct: 71  TMGIEKVFMAKNADSALKLGQARGAAIVAGAEEGMEIAEYTATQVKQAVVGTGAANKEQV 130

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
            MM+  ++  +     DA+DALAIA+CHA+  +S
Sbjct: 131 QMMVMHMLKLTSKPQIDASDALAIAICHAHTRSS 164


>gi|229592302|ref|YP_002874421.1| Holliday junction resolvase [Pseudomonas fluorescens SBW25]
 gi|259495691|sp|C3JYS9|RUVC_PSEFS RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|229364168|emb|CAY51823.1| crossover junction endodeoxyribonuclease [Pseudomonas fluorescens
           SBW25]
          Length = 174

 Score =  209 bits (533), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 62/154 (40%), Positives = 97/154 (62%), Gaps = 1/154 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G+V        +V+SG I +     LA RL  +Y G+ +VI+ + P 
Sbjct: 4   ILGIDPGSRITGFGVVQQTPRGCVYVASGCIRTGAG-ELAERLQIVYRGVREVIQTYGPV 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
              +E+VF+ K+A + LKLGQAR  AI++ A   + ++EY    +K+AV+G G  +K+Q+
Sbjct: 63  TMGIEKVFMAKNADSALKLGQARGAAIVAGAEEGMEIAEYTATQVKQAVVGTGAANKEQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
            MM+  ++  +     DA+DALAIA+CHA+  +S
Sbjct: 123 QMMVMHMLKLTSKPQIDASDALAIAICHAHTRSS 156


>gi|332188823|ref|ZP_08390532.1| crossover junction endodeoxyribonuclease RuvC [Sphingomonas sp.
           S17]
 gi|332011133|gb|EGI53229.1| crossover junction endodeoxyribonuclease RuvC [Sphingomonas sp.
           S17]
          Length = 172

 Score =  209 bits (533), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 72/157 (45%), Positives = 99/157 (63%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+G+DPGL  TGWG++   G+ L  V++G I +     L  RL  L+  L DVI+  +P+
Sbjct: 8   ILGLDPGLGTTGWGVIAAEGNRLRHVANGQIKTEPSMPLPRRLANLHAALYDVIRQQQPD 67

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
            AAVE+V  N +A +TLKLGQAR I +L+ A A + V EY P+ +KKA +G G  DKKQ+
Sbjct: 68  GAAVEEVLGNSNAQSTLKLGQARGIVLLAAAQAGLIVGEYHPSIVKKATVGTGGADKKQV 127

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYY 163
             M+  L+P     G DAADALA+A+ HA+H  S   
Sbjct: 128 QAMVGHLLPGVKLTGPDAADALAVAITHAHHLASARA 164


>gi|121606298|ref|YP_983627.1| Holliday junction resolvase [Polaromonas naphthalenivorans CJ2]
 gi|166233279|sp|A1VSS8|RUVC_POLNA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|120595267|gb|ABM38706.1| crossover junction endodeoxyribonuclease RuvC [Polaromonas
           naphthalenivorans CJ2]
          Length = 182

 Score =  209 bits (533), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 67/164 (40%), Positives = 103/164 (62%), Gaps = 3/164 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCV--RQSLAFRLCQLYEGLTDVIKN 62
           + I+GIDPGL+ TG+G+VD+ G +L +V+SGTI +     + L  RL  L++G+ +V++ 
Sbjct: 1   MHILGIDPGLQITGFGVVDMDGPHLRYVASGTIKTTHLDTKDLPGRLKVLFDGVREVVQR 60

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
           ++PE A+VE VFVN +  ATL LGQAR   I +   + + V+EY    +KKAV G G   
Sbjct: 61  YQPEVASVEIVFVNVNPQATLLLGQARGACITALVSSDLAVAEYTALQMKKAVAGYGKAG 120

Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
           K ++  M+  L+      GKDAADAL +A+ HA+   +   ++A
Sbjct: 121 KAEVQQMVMRLLKLPSLPGKDAADALGLAITHAH-VGTAMARLA 163


>gi|71065265|ref|YP_263992.1| Holliday junction resolvase [Psychrobacter arcticus 273-4]
 gi|97274883|sp|Q4FTV0|RUVC_PSYA2 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|71038250|gb|AAZ18558.1| putative crossover junction endodeoxyribonuclease [Psychrobacter
           arcticus 273-4]
          Length = 194

 Score =  209 bits (532), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 64/159 (40%), Positives = 95/159 (59%), Gaps = 6/159 (3%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW--- 63
           IIGIDPG R TG+GI+   GD L ++ SGTI +  +  +  RL +++ GLT + ++    
Sbjct: 4   IIGIDPGSRMTGYGILQQTGDKLTYIDSGTIRTDTK-EMPERLKRIFNGLTRITQHHLKY 62

Query: 64  --RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
              P   A+EQVF+ ++  + LKLGQAR  AI +     + VSEY    IK+AV G G  
Sbjct: 63  ADEPIYTAIEQVFMAENPDSALKLGQARGAAIAAMVALDLEVSEYTARQIKQAVCGYGAA 122

Query: 122 DKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
            K+Q+  M+  ++   F   +DAAD LA A+CHA+ ++S
Sbjct: 123 AKEQVQDMVCRILTLDFVPQQDAADGLACAICHAHSSHS 161


>gi|284037130|ref|YP_003387060.1| crossover junction endodeoxyribonuclease RuvC [Spirosoma linguale
           DSM 74]
 gi|283816423|gb|ADB38261.1| crossover junction endodeoxyribonuclease RuvC [Spirosoma linguale
           DSM 74]
          Length = 182

 Score =  209 bits (532), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 58/155 (37%), Positives = 88/155 (56%), Gaps = 1/155 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+G+DPG    G+GI+ V G  +  +  G +      +   +L +LYE +  +I  + P+
Sbjct: 2   ILGVDPGTMIAGYGIISVKGGTMSMIQYGVVQLSKYTTYQLKLQKLYETILRLIDEYHPD 61

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E  F  K+  A LKLG+A+ + + +     IP+ EYAP  IK++V G G+  K Q+
Sbjct: 62  EMAIEDPFFGKNVQAMLKLGRAQGVVMAAALSRNIPIVEYAPRRIKQSVTGNGNASKDQV 121

Query: 127 HMMLKMLMPESF-FKGKDAADALAIAVCHAYHANS 160
             M+  L+ E    K  DA DALAIAVCH +H N+
Sbjct: 122 SQMVGHLLKEDLDPKFFDATDALAIAVCHHFHENA 156


>gi|117920400|ref|YP_869592.1| Holliday junction resolvase [Shewanella sp. ANA-3]
 gi|166233301|sp|A0KWL7|RUVC_SHESA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|117612732|gb|ABK48186.1| crossover junction endodeoxyribonuclease RuvC [Shewanella sp.
           ANA-3]
          Length = 173

 Score =  208 bits (531), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 64/162 (39%), Positives = 105/162 (64%), Gaps = 2/162 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+G+DPG R TG+G++   G    ++ SG I +   + L  RL Q+++G++++I+ ++P+
Sbjct: 4   ILGVDPGSRITGYGVIQCLGRQQLYLGSGCIRT-SGEDLPLRLKQIFDGISEIIRQYQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E+VF+ K+A + LKLGQAR  AI++  +A +PV+EY+   IK AV+G G   K+Q+
Sbjct: 63  EFAIERVFLAKNADSALKLGQARGAAIVAATVANLPVAEYSATQIKNAVVGTGRAKKEQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
             M++ L+        DAADAL +AVCH YH N     ++ +
Sbjct: 123 QHMIQQLLKLPAAPQADAADALGVAVCH-YHTNQSLVALSGR 163


>gi|210635286|ref|ZP_03298482.1| hypothetical protein COLSTE_02413 [Collinsella stercoris DSM 13279]
 gi|210158447|gb|EEA89418.1| hypothetical protein COLSTE_02413 [Collinsella stercoris DSM 13279]
          Length = 174

 Score =  208 bits (531), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 59/157 (37%), Positives = 88/157 (56%), Gaps = 1/157 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + I+GIDPGL  TGWGIV+     +   + G I +     LA RL ++   LT V+  + 
Sbjct: 1   MVILGIDPGLAHTGWGIVEERHGEVRCRAYGCIETSAGSDLAARLRRIANELTTVVDRYH 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+EAAVE ++   +  + +    AR  A+++ +L  + V EY P  IK+AV+G G  DK 
Sbjct: 61  PQEAAVEGIYFGANVRSAIPTAHARGAALVACSLCSVEVGEYTPMQIKQAVVGTGSADKA 120

Query: 125 QIHMMLKMLMPES-FFKGKDAADALAIAVCHAYHANS 160
           Q+  M++ L+      K   AADALA AVCHA+   +
Sbjct: 121 QVTYMVRTLLHLDHDPKPDHAADALACAVCHAHLRRT 157


>gi|116625019|ref|YP_827175.1| crossover junction endodeoxyribonuclease RuvC [Candidatus
           Solibacter usitatus Ellin6076]
 gi|122252542|sp|Q01TY0|RUVC_SOLUE RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|116228181|gb|ABJ86890.1| crossover junction endodeoxyribonuclease RuvC [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 166

 Score =  208 bits (531), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 59/157 (37%), Positives = 93/157 (59%), Gaps = 1/157 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++G+D G  RTGWG++D  G     V++G I +  +     RL ++   L  +I+   
Sbjct: 1   MRVLGVDCGSERTGWGVIDSDGGCHRMVAAGVIRTSPKCPFDRRLLEIGTALRGLIREHT 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           PE AAVE+VF   +A   LKL   R +A+L+ A A +  +EY+P  +K +V+G G  +K 
Sbjct: 61  PEFAAVEEVFHAVNAKTALKLAHVRGVALLTIAEAGVVFAEYSPLEVKMSVVGYGRAEKS 120

Query: 125 QIHMMLKMLMPESF-FKGKDAADALAIAVCHAYHANS 160
           Q+ MM++ L+        +DA+DALAIA+CHA H  +
Sbjct: 121 QVQMMVQSLLRLPEVIASEDASDALAIAICHATHQAT 157


>gi|110638579|ref|YP_678789.1| Holliday junction resolvase [Cytophaga hutchinsonii ATCC 33406]
 gi|123058720|sp|Q11T17|RUVC_CYTH3 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|110281260|gb|ABG59446.1| crossover junction endodeoxyribonuclease (Holliday junction
           nuclease) [Cytophaga hutchinsonii ATCC 33406]
          Length = 200

 Score =  208 bits (531), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 53/154 (34%), Positives = 89/154 (57%), Gaps = 1/154 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+G+DPG    G+G++ + G  L  +  G I        A +L +++E ++ +I+ + P+
Sbjct: 14  ILGVDPGTNVMGYGLIAIKGTQLTLIQFGVIHLSKYTDHAIKLSKIFERISLLIEEYHPD 73

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E  F   +  + LKLG+A+ +AI +    ++P+ EYAP  IK++V G G+  K+Q+
Sbjct: 74  EMAIEAPFFGSNVQSMLKLGRAQGVAIAAAISKQVPIFEYAPKKIKQSVTGSGNASKEQV 133

Query: 127 HMML-KMLMPESFFKGKDAADALAIAVCHAYHAN 159
             ML K+L  +   K  DA DAL +AVCH +   
Sbjct: 134 AAMLSKILFFQEIPKLLDATDALGVAVCHYFQKG 167


>gi|66044656|ref|YP_234497.1| Holliday junction resolvase [Pseudomonas syringae pv. syringae
           B728a]
 gi|75502954|sp|Q4ZWL3|RUVC_PSEU2 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|63255363|gb|AAY36459.1| Crossover junction endodeoxyribonuclease RuvC [Pseudomonas syringae
           pv. syringae B728a]
          Length = 174

 Score =  208 bits (530), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 63/154 (40%), Positives = 96/154 (62%), Gaps = 1/154 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G+V   G    +V+SG I +     L  RL  +Y G+ +VIK + P 
Sbjct: 4   ILGIDPGSRITGYGVVRDTGRGCVYVASGCIRTGSG-ELHERLQIVYRGVREVIKTYEPV 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
              +E+VF+ ++A + LKLGQAR  AI++ A   + ++EY    +K+AV G G  +K+Q+
Sbjct: 63  TMGIEKVFMARNADSALKLGQARGAAIVAGAEEALEIAEYTATQVKQAVAGTGGANKEQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
            MM+  L+  +     DA+DALAIA+CHA+  +S
Sbjct: 123 MMMVMHLLKLTQKPQIDASDALAIALCHAHTRSS 156


>gi|154494158|ref|ZP_02033478.1| hypothetical protein PARMER_03505 [Parabacteroides merdae ATCC
           43184]
 gi|154086020|gb|EDN85065.1| hypothetical protein PARMER_03505 [Parabacteroides merdae ATCC
           43184]
          Length = 185

 Score =  208 bits (530), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 53/163 (32%), Positives = 87/163 (53%), Gaps = 3/163 (1%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M K   I+GIDPG    G+G++ + G+     + G +     +    RL +++E +  +I
Sbjct: 1   MTKDRVILGIDPGTIVMGYGVLTIEGNKPKLEAMGILQLNKYEDHYLRLRKIFERVLGLI 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             + P+E A+E  F  K+  + LKLG+A+ +A+ +     IP+ EYAP  IK ++ G G+
Sbjct: 61  DQYHPDELAIEAPFFGKNVQSMLKLGRAQGVAMAAALERDIPIFEYAPLKIKMSITGNGN 120

Query: 121 GDKKQIHMMLKMLMP---ESFFKGKDAADALAIAVCHAYHANS 160
             K+Q+  ML+  +     S     DA D LA AVCH +  N+
Sbjct: 121 AAKEQVAGMLQRYLHIPEASMLPQLDATDGLAAAVCHYFQTNN 163


>gi|300728000|ref|ZP_07061378.1| crossover junction endodeoxyribonuclease RuvC [Prevotella bryantii
           B14]
 gi|299774842|gb|EFI71456.1| crossover junction endodeoxyribonuclease RuvC [Prevotella bryantii
           B14]
          Length = 232

 Score =  208 bits (530), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 53/157 (33%), Positives = 87/157 (55%), Gaps = 3/157 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG    G+G++ V G++   +  G I          RL ++++ +T +I  + P+
Sbjct: 14  ILGIDPGTNVMGYGLIKVVGNHASMMVMGVIDMRRESDPYLRLGKIFDRVTGIIDEYLPD 73

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E  F  K+  + LKLG+A+ +AI +     +P+ EYAP  IK+A+ G G   K+Q+
Sbjct: 74  EMAIEAPFFEKNIQSMLKLGRAQGVAIAAAIHHDVPIHEYAPLKIKQAITGQGQASKEQV 133

Query: 127 HMMLKMLMP---ESFFKGKDAADALAIAVCHAYHANS 160
             ML+ L+    +   K  DA DAL  A CH   +++
Sbjct: 134 ASMLQRLLHISQDDMPKFMDATDALGAAYCHFLQSST 170


>gi|330968892|gb|EGH68958.1| Holliday junction resolvase [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 174

 Score =  208 bits (530), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 62/154 (40%), Positives = 95/154 (61%), Gaps = 1/154 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G+V   G    +V+SG I +     L  RL  +Y G+ +VIK + P 
Sbjct: 4   ILGIDPGSRITGYGVVRDTGRGCVYVASGCIRTGSG-ELHERLQIVYRGVREVIKTYEPV 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
              +E+VF+ ++A + LKLGQAR   I++ A   + ++EY    +K+AV G G  +K+Q+
Sbjct: 63  TMGIEKVFMARNADSALKLGQARGAVIVAGAEEALEIAEYTATQVKQAVAGTGGANKEQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
            MM+  L+  +     DA+DALAIA+CHA+  +S
Sbjct: 123 MMMVMHLLKLTQKPQIDASDALAIALCHAHTRSS 156


>gi|319778456|ref|YP_004129369.1| Crossover junction endodeoxyribonuclease RuvC [Taylorella
           equigenitalis MCE9]
 gi|317108480|gb|ADU91226.1| Crossover junction endodeoxyribonuclease RuvC [Taylorella
           equigenitalis MCE9]
          Length = 182

 Score =  208 bits (530), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 62/154 (40%), Positives = 94/154 (61%), Gaps = 1/154 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +RI+GIDPGLR TG+G+++      L +V+SGTI       L  RL  + EG+ +VI+++
Sbjct: 1   MRIVGIDPGLRFTGYGVIEASQNGQLQYVASGTIAIPTDLPLYKRLVHIMEGVQEVIEHF 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P+ + +E+V VNK+   TL LGQAR  A+++ A   + V EY    IKK+V   G   K
Sbjct: 61  NPKTSCIEEVVVNKNGKTTLLLGQARGAALVTLANLGLEVFEYPALQIKKSVSSNGRAPK 120

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYH 157
           +Q+  M+K ++  +     DAADALA A+ HA+ 
Sbjct: 121 EQVRQMVKYILNLNNMPSSDAADALACAITHAHM 154


>gi|85858585|ref|YP_460787.1| crossover junction endodeoxyribonuclease [Syntrophus aciditrophicus
           SB]
 gi|85721676|gb|ABC76619.1| crossover junction endodeoxyribonuclease [Syntrophus aciditrophicus
           SB]
          Length = 181

 Score =  207 bits (529), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 56/155 (36%), Positives = 90/155 (58%), Gaps = 2/155 (1%)

Query: 5   IR--IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
           +R  ++GIDPG   TG+GIV+   +    +  G I      S    L ++Y+ L  +++ 
Sbjct: 21  MRLKVLGIDPGSVVTGFGIVEQIQERYIDIVHGEIRLKRGTSFTSSLEKIYDELFSLVER 80

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
            +P+  A+E +F  K+  + +K G  R +AIL+ +   +PV EY P  IKKAV+G GH +
Sbjct: 81  EQPDAVAIEDIFYGKNIKSLIKQGHVRGVAILAGSKHHLPVFEYTPLEIKKAVVGYGHAE 140

Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYH 157
           K Q+  M+K++M  S     DA+DA+A+A+CH  H
Sbjct: 141 KIQVQNMIKVIMKLSELPPADASDAIAVAICHLNH 175


>gi|127513005|ref|YP_001094202.1| crossover junction endodeoxyribonuclease RuvC [Shewanella loihica
           PV-4]
 gi|166233299|sp|A3QEP5|RUVC_SHELP RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|126638300|gb|ABO23943.1| crossover junction endodeoxyribonuclease RuvC [Shewanella loihica
           PV-4]
          Length = 173

 Score =  207 bits (529), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 59/154 (38%), Positives = 98/154 (63%), Gaps = 1/154 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+G+DPG R TG+G++   G    ++ SG I +     L  RL  +++G++++I+ ++P+
Sbjct: 4   ILGVDPGSRITGYGVIQCQGRQQIYLGSGCIRTQSD-DLPSRLKVIFDGISEIIRQYQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E+VF+ K+A + LKLGQAR  AI++   A++PV+EY+   IK AV+G G   K Q+
Sbjct: 63  EFAIERVFLAKNADSALKLGQARGAAIVAATNAQLPVAEYSATQIKNAVVGTGRAQKSQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
             M++ ++        DAADAL +A+CH +   S
Sbjct: 123 QHMVQQILKLPAAPQADAADALGVALCHFHTYQS 156


>gi|218263283|ref|ZP_03477454.1| hypothetical protein PRABACTJOHN_03138 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222829|gb|EEC95479.1| hypothetical protein PRABACTJOHN_03138 [Parabacteroides johnsonii
           DSM 18315]
          Length = 185

 Score =  207 bits (529), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 53/163 (32%), Positives = 86/163 (52%), Gaps = 3/163 (1%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M K   I+GIDPG    G+G++ + G      + G +     +    RL +++E +  +I
Sbjct: 1   MTKDRVILGIDPGTIVMGYGVLKIEGHKPKLEAMGILQLNKYEDHYLRLRKIFERVLGLI 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             + P+E A+E  F  K+  + LKLG+A+ +A+ +     IP+ EYAP  IK ++ G G+
Sbjct: 61  DQYHPDELAIEAPFFGKNVQSMLKLGRAQGVAMAAALERDIPIFEYAPLKIKMSITGNGN 120

Query: 121 GDKKQIHMMLKMLMP---ESFFKGKDAADALAIAVCHAYHANS 160
             K+Q+  ML+  +     S     DA D LA AVCH +  N+
Sbjct: 121 AAKEQVAGMLQRYLHIPEASMLPQLDATDGLAAAVCHYFQTNN 163


>gi|24373978|ref|NP_718021.1| crossover junction endodeoxyribonuclease RuvC [Shewanella
           oneidensis MR-1]
 gi|38372486|sp|Q8EEF1|RUVC_SHEON RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|24348429|gb|AAN55465.1|AE015684_2 crossover junction endodeoxyribonuclease RuvC [Shewanella
           oneidensis MR-1]
          Length = 173

 Score =  207 bits (529), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 63/162 (38%), Positives = 104/162 (64%), Gaps = 2/162 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+G+DPG R TG+G++   G    ++ SG I +     L  +L Q+++G++++I+ ++P+
Sbjct: 4   ILGVDPGSRITGYGVIQCQGRQQLYLGSGCIRT-SGDDLPLKLKQIFDGISEIIRQYQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E+VF+ K+A + LKLGQAR  AI++  +A +PV+EY+   IK AV+G G   K+Q+
Sbjct: 63  EFAIERVFLAKNADSALKLGQARGAAIVAATVANLPVAEYSATQIKSAVVGTGRAKKEQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
             M++ L+        DAADAL +AVCH YH N     ++ +
Sbjct: 123 QHMIQQLLKLPAAPQADAADALGVAVCH-YHTNQSLVALSGR 163


>gi|71738104|ref|YP_275914.1| Holliday junction resolvase [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|237800217|ref|ZP_04588678.1| Holliday junction resolvase [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|257487011|ref|ZP_05641052.1| Holliday junction resolvase [Pseudomonas syringae pv. tabaci ATCC
           11528]
 gi|289626495|ref|ZP_06459449.1| Holliday junction resolvase [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289650941|ref|ZP_06482284.1| Holliday junction resolvase [Pseudomonas syringae pv. aesculi str.
           2250]
 gi|110282922|sp|Q48FC3|RUVC_PSE14 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|71558657|gb|AAZ37868.1| crossover junction endodeoxyribonuclease RuvC [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|320323053|gb|EFW79142.1| Holliday junction resolvase [Pseudomonas syringae pv. glycinea str.
           B076]
 gi|320329675|gb|EFW85664.1| Holliday junction resolvase [Pseudomonas syringae pv. glycinea str.
           race 4]
 gi|330868611|gb|EGH03320.1| Holliday junction resolvase [Pseudomonas syringae pv. aesculi str.
           0893_23]
 gi|330877980|gb|EGH12129.1| Holliday junction resolvase [Pseudomonas syringae pv. glycinea str.
           race 4]
 gi|330892239|gb|EGH24900.1| Holliday junction resolvase [Pseudomonas syringae pv. mori str.
           301020]
 gi|331009347|gb|EGH89403.1| Holliday junction resolvase [Pseudomonas syringae pv. tabaci ATCC
           11528]
 gi|331023074|gb|EGI03131.1| Holliday junction resolvase [Pseudomonas syringae pv. oryzae str.
           1_6]
          Length = 174

 Score =  207 bits (529), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 63/154 (40%), Positives = 96/154 (62%), Gaps = 1/154 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G+V   G    +V+SG I +     L  RL  +Y G+ +VIK + P 
Sbjct: 4   ILGIDPGSRITGYGVVRDTGRGCVYVASGCIRTGSG-ELHERLQIVYRGVREVIKTYGPV 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
              +E+VF+ ++A + LKLGQAR  AI++ A   + ++EY    +K+AV G G  +K+Q+
Sbjct: 63  TMGIEKVFMARNADSALKLGQARGAAIVAGAEEALEIAEYTATQVKQAVAGTGGANKEQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
            MM+  L+  +     DA+DALAIA+CHA+  +S
Sbjct: 123 MMMVMHLLKLTQKPQIDASDALAIALCHAHTRSS 156


>gi|298488210|ref|ZP_07006246.1| Crossover junction endodeoxyribonuclease ruvC [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|298157268|gb|EFH98352.1| Crossover junction endodeoxyribonuclease ruvC [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
          Length = 174

 Score =  207 bits (529), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 63/154 (40%), Positives = 96/154 (62%), Gaps = 1/154 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G+V   G    +V+SG I +     L  RL  +Y G+ +VIK + P 
Sbjct: 4   ILGIDPGSRITGYGVVRDTGRGCIYVASGCIRTGSG-ELHERLQIVYRGVREVIKTYGPV 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
              +E+VF+ ++A + LKLGQAR  AI++ A   + ++EY    +K+AV G G  +K+Q+
Sbjct: 63  TMGIEKVFMARNADSALKLGQARGAAIVAGAEEALEIAEYTATQVKQAVAGTGGANKEQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
            MM+  L+  +     DA+DALAIA+CHA+  +S
Sbjct: 123 MMMVMHLLKLTQKPQIDASDALAIALCHAHTRSS 156


>gi|312129060|ref|YP_003996400.1| crossover junction endodeoxyribonuclease ruvc [Leadbetterella
           byssophila DSM 17132]
 gi|311905606|gb|ADQ16047.1| crossover junction endodeoxyribonuclease RuvC [Leadbetterella
           byssophila DSM 17132]
          Length = 189

 Score =  207 bits (529), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 51/155 (32%), Positives = 87/155 (56%), Gaps = 1/155 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+G+DPG R  G+GI++V    L  +  G +      S   +L +++E +T +I  + P+
Sbjct: 10  ILGVDPGTRVMGYGIIEVKNSQLKVIQYGVLRLEKLTSHELKLKRIFERITQLINEYLPD 69

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E  F  ++  + LKLG+A+ +A+ +     I + EY P  +K++V G G+  K+Q+
Sbjct: 70  EMAIEAPFYGENVQSMLKLGRAQGVAMAAALAKDINIVEYLPKKVKQSVTGNGNATKEQV 129

Query: 127 HMMLKMLMPESFFK-GKDAADALAIAVCHAYHANS 160
             ML+ L      +   DA DALA+ VCH  H+ +
Sbjct: 130 AYMLEKLFNHPLERTFLDATDALAVGVCHFMHSGT 164


>gi|213969184|ref|ZP_03397323.1| Holliday junction resolvase [Pseudomonas syringae pv. tomato T1]
 gi|301384821|ref|ZP_07233239.1| Holliday junction resolvase [Pseudomonas syringae pv. tomato Max13]
 gi|302063525|ref|ZP_07255066.1| Holliday junction resolvase [Pseudomonas syringae pv. tomato K40]
 gi|302130611|ref|ZP_07256601.1| Holliday junction resolvase [Pseudomonas syringae pv. tomato NCPPB
           1108]
 gi|302187158|ref|ZP_07263831.1| Holliday junction resolvase [Pseudomonas syringae pv. syringae 642]
 gi|213926182|gb|EEB59738.1| Holliday junction resolvase [Pseudomonas syringae pv. tomato T1]
 gi|330872654|gb|EGH06803.1| Holliday junction resolvase [Pseudomonas syringae pv. morsprunorum
           str. M302280PT]
 gi|330950610|gb|EGH50870.1| Holliday junction resolvase [Pseudomonas syringae Cit 7]
 gi|330964823|gb|EGH65083.1| Holliday junction resolvase [Pseudomonas syringae pv. actinidiae
           str. M302091]
 gi|331016438|gb|EGH96494.1| Holliday junction resolvase [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 174

 Score =  207 bits (528), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 63/154 (40%), Positives = 96/154 (62%), Gaps = 1/154 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G+V   G    +V+SG I +     L  RL  +Y G+ +VIK + P 
Sbjct: 4   ILGIDPGSRITGYGVVRDTGRGCVYVASGCIRTGSG-ELHERLQIVYRGVREVIKTYGPV 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
              +E+VF+ ++A + LKLGQAR  AI++ A   + ++EY    +K+AV G G  +K+Q+
Sbjct: 63  TMGIEKVFMARNADSALKLGQARGAAIVAGAEEALEIAEYTATQVKQAVAGTGGANKEQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
            MM+  L+  +     DA+DALAIA+CHA+  +S
Sbjct: 123 MMMVMHLLKLTQKPQIDASDALAIALCHAHTRSS 156


>gi|77460630|ref|YP_350137.1| Holliday junction resolvase [Pseudomonas fluorescens Pf0-1]
 gi|91771934|sp|Q3K7V8|RUVC_PSEPF RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|77384633|gb|ABA76146.1| crossover junction endodeoxyribonuclease [Pseudomonas fluorescens
           Pf0-1]
          Length = 175

 Score =  207 bits (527), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 62/155 (40%), Positives = 97/155 (62%), Gaps = 2/155 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           I+GIDPG R TG+GIV   G     +V+SG I +     L  RL  +Y G+ ++I+ + P
Sbjct: 4   ILGIDPGSRITGYGIVRDTGRGGCIYVASGCIRTGAG-ELHERLQIVYRGVREIIQTYGP 62

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
               +E+VF+ K+A + LKLGQAR  AI++ A   + ++EY    +K+AV+G G  +K+Q
Sbjct: 63  VTMGIEKVFMAKNADSALKLGQARGAAIVAGAEESLEIAEYTATQVKQAVVGTGAANKEQ 122

Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           + MM+  ++  +     DA+DALAIA+CHA+  +S
Sbjct: 123 VQMMVMHMLKLTSKPQIDASDALAIAICHAHTRSS 157


>gi|330988968|gb|EGH87071.1| Holliday junction resolvase [Pseudomonas syringae pv. lachrymans
           str. M301315]
          Length = 174

 Score =  207 bits (527), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 63/154 (40%), Positives = 96/154 (62%), Gaps = 1/154 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G+V   G    +V+SG I +     L  RL  +Y G+ +VIK + P 
Sbjct: 4   ILGIDPGSRITGYGVVRDTGRGCVYVASGCIRTGSG-ELHERLQIVYRGVREVIKTYGPV 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
              +E+VF+ ++A + LKLGQAR  AI++ A   + ++EY    +K+AV G G  +K+Q+
Sbjct: 63  TMGIEKVFMARNADSALKLGQARGAAIVAGAEEALEIAEYTATQVKQAVAGTGGANKEQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
            MM+  L+  +     DA+DALAIA+CHA+  +S
Sbjct: 123 MMMVMHLLKLTQKPQIDASDALAIALCHAHTRSS 156


>gi|330896127|gb|EGH28348.1| Holliday junction resolvase [Pseudomonas syringae pv. japonica str.
           M301072PT]
 gi|330936722|gb|EGH40907.1| Holliday junction resolvase [Pseudomonas syringae pv. pisi str.
           1704B]
 gi|330975329|gb|EGH75395.1| Holliday junction resolvase [Pseudomonas syringae pv. aptata str.
           DSM 50252]
          Length = 174

 Score =  207 bits (527), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 63/154 (40%), Positives = 96/154 (62%), Gaps = 1/154 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G+V   G    +V+SG I +     L  RL  +Y G+ +VIK + P 
Sbjct: 4   ILGIDPGSRITGYGVVRDTGRGCVYVASGCIRTGSG-ELHERLQIVYRGVREVIKTYGPV 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
              +E+VF+ ++A + LKLGQAR  AI++ A   + ++EY    +K+AV G G  +K+Q+
Sbjct: 63  TMGIEKVFMARNADSALKLGQARGAAIVAGAEEALEIAEYTATQVKQAVAGTGGANKEQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
            MM+  L+  +     DA+DALAIA+CHA+  +S
Sbjct: 123 MMMVMHLLKLTQKPQIDASDALAIALCHAHTRSS 156


>gi|294341438|emb|CAZ89855.1| Crossover junction endodeoxyribonuclease ruvC (Holliday junction
           nuclease ruvC) (Holliday juction resolvase ruvC)
           [Thiomonas sp. 3As]
          Length = 195

 Score =  207 bits (527), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 67/173 (38%), Positives = 96/173 (55%), Gaps = 9/173 (5%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGL  TG+G++D  G  L + +SG I       L  RL  L++G+++V +   
Sbjct: 1   MRILGIDPGLNTTGYGVIDAQGQRLGYQASGAIRIPKGT-LPERLKTLFDGVSEVARQAG 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
            E A VE VFVN +  +TL LGQAR  AI +     +PV EY    +KK+++G G   K 
Sbjct: 60  AEVAVVEIVFVNVNPQSTLLLGQARGAAIAALVAQGLPVVEYTALQLKKSIVGYGRASKS 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAY--------HANSGYYKIASQD 169
           QI  M+  L+      G DAADAL +A+CHA+        H  S    +++ D
Sbjct: 120 QIQEMVMRLLALPGQPGPDAADALGLAICHAHAQRGLAALHRASPTAGLSTAD 172


>gi|257466060|ref|ZP_05630371.1| crossover junction endodeoxyribonuclease ruvC [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|315917215|ref|ZP_07913455.1| crossover junction endodeoxyribonuclease ruvC [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|313691090|gb|EFS27925.1| crossover junction endodeoxyribonuclease ruvC [Fusobacterium
           gonidiaformans ATCC 25563]
          Length = 189

 Score =  206 bits (526), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 43/136 (31%), Positives = 74/136 (54%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPG    G+G++D        V  G I +     +  RL +++E L+ +I+ ++
Sbjct: 1   MRILGIDPGTAIVGYGVIDYEKGKFHVVDYGCIYTEKDLPMEDRLIKIHEELSSLIQKYQ 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           PEE AVE++F  K+    + +GQAR + +L+  L  + +  Y P  +K  + G G  +KK
Sbjct: 61  PEEMAVEELFYFKNNKTVISVGQARGVIVLTGRLHGLQIHSYTPLQVKMGITGYGRAEKK 120

Query: 125 QIHMMLKMLMPESFFK 140
           QI  M++  +  S   
Sbjct: 121 QIQQMVQRFLGLSEIP 136


>gi|28871124|ref|NP_793743.1| crossover junction endodeoxyribonuclease RuvC [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|37999571|sp|Q87Y33|RUVC_PSESM RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|28854374|gb|AAO57438.1| crossover junction endodeoxyribonuclease RuvC [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 176

 Score =  206 bits (526), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 63/155 (40%), Positives = 96/155 (61%), Gaps = 1/155 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVS-CVRQSLAFRLCQLYEGLTDVIKNWRP 65
           I+GIDPG R TG+G+V   G    +V+SG I +      L  RL  +Y G+ +VIK + P
Sbjct: 4   ILGIDPGSRITGYGVVRDTGRGCVYVASGCIRTGTGSGELHERLQIVYRGVREVIKTYGP 63

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
               +E+VF+ ++A + LKLGQAR  AI++ A   + ++EY    +K+AV G G  +K+Q
Sbjct: 64  VTMGIEKVFMARNADSALKLGQARGAAIVAGAEEALEIAEYTATQVKQAVAGTGGANKEQ 123

Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           + MM+  L+  +     DA+DALAIA+CHA+  +S
Sbjct: 124 VMMMVMHLLKLTQKPQIDASDALAIALCHAHTRSS 158


>gi|326386111|ref|ZP_08207735.1| crossover junction endodeoxyribonuclease RuvC [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326209336|gb|EGD60129.1| crossover junction endodeoxyribonuclease RuvC [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 158

 Score =  206 bits (526), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 75/156 (48%), Positives = 104/156 (66%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + I+G+DPGL  TGWGI+  AG  L  V++G I +   +++A RL +L   LTDVI   R
Sbjct: 1   MIILGVDPGLTCTGWGIIAKAGSRLSHVANGQIRTDASRTMAERLVELDTTLTDVILAHR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  AVE+VFVN +  +TLKLG AR +A++S A A +PV+EY    IKKA++G G   K+
Sbjct: 61  PDAGAVEEVFVNVNPQSTLKLGHARGVALVSLARAGMPVAEYPTKVIKKALVGTGGAQKQ 120

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           Q+  MLK+L+P     G+DAADALA+A+ HA    S
Sbjct: 121 QVQAMLKVLLPGIRLAGEDAADALAVAITHANMLGS 156


>gi|302335490|ref|YP_003800697.1| crossover junction endodeoxyribonuclease RuvC [Olsenella uli DSM
           7084]
 gi|301319330|gb|ADK67817.1| crossover junction endodeoxyribonuclease RuvC [Olsenella uli DSM
           7084]
          Length = 218

 Score =  206 bits (526), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 53/157 (33%), Positives = 90/157 (57%), Gaps = 1/157 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + I+GIDPGL  TGWG+++  G      + G I +   ++L  RL  +Y+GL++ I  ++
Sbjct: 1   MIILGIDPGLANTGWGVIETRGTLCRARAYGCISTSSSETLDRRLGAIYDGLSEAIGTYQ 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P + A+E++F  ++  + L    AR  AI++ +   + + EY P  IK+AV+G G  DK+
Sbjct: 61  PSQLAIEKIFFGENTRSALATAHARGAAIVACSRMGLEMGEYTPMQIKQAVVGTGSADKR 120

Query: 125 QIHMMLKMLMPES-FFKGKDAADALAIAVCHAYHANS 160
           Q+  M++ ++      +    ADALA AVCHA    +
Sbjct: 121 QVIYMVRNILDLDHDPRPDHCADALAAAVCHANLTRT 157


>gi|213613175|ref|ZP_03371001.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 141

 Score =  206 bits (526), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 56/139 (40%), Positives = 87/139 (62%), Gaps = 1/139 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I + V   L  RL  +Y G+T++I  ++P+
Sbjct: 4   ILGIDPGSRITGYGVIRQVGRQLTYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR +AI++     +PV EYA   +K+ V+G+G  +K Q+
Sbjct: 63  YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 122

Query: 127 HMMLKMLMPESFFKGKDAA 145
             M++ L+        DAA
Sbjct: 123 QHMVRTLLKLPANPQADAA 141


>gi|303233208|ref|ZP_07319881.1| crossover junction endodeoxyribonuclease RuvC [Atopobium vaginae
           PB189-T1-4]
 gi|302480793|gb|EFL43880.1| crossover junction endodeoxyribonuclease RuvC [Atopobium vaginae
           PB189-T1-4]
          Length = 217

 Score =  206 bits (525), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 56/157 (35%), Positives = 90/157 (57%), Gaps = 2/157 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + I+GIDPGL  TGWGI++  G      + G I +   +SL  RL  +Y+G+   I  + 
Sbjct: 1   MIILGIDPGLAHTGWGIIETKGSVCRARAYGCITTHAAESLDRRLGSIYDGIEQAICTYA 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P E A+E++F  ++  + +    AR  A+++ A A I + EY P  IK+AV+G G  DK+
Sbjct: 61  PAEVAIEKIFFGENTASAIATAHARGAALVACARAGIVLGEYTPMQIKQAVVGTGSADKR 120

Query: 125 QIHMMLKMLMPES-FFKGKDAADALAIAVCHAYHANS 160
           Q+  M++ ++      +    ADALA A+CH ++A S
Sbjct: 121 QVIYMVRTILKLDHDPRPDHCADALAAAICH-HNAQS 156


>gi|94496898|ref|ZP_01303472.1| Holliday junction resolvasome endonuclease subunit [Sphingomonas
           sp. SKA58]
 gi|94423574|gb|EAT08601.1| Holliday junction resolvasome endonuclease subunit [Sphingomonas
           sp. SKA58]
          Length = 163

 Score =  206 bits (525), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 68/158 (43%), Positives = 104/158 (65%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + ++G+DPGL  TGWG++   G+ L  + +G I +    +LA RL  +   LTD+I   R
Sbjct: 1   MILLGLDPGLGTTGWGLIAADGNRLTHIGNGQIKTDAGMALATRLLAIDLALTDLILEHR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ AAVE+VFVN +  +TLKLGQAR + +L+ + + + V EYA   +KK+V+GVG+  K 
Sbjct: 61  PDGAAVEEVFVNVNPQSTLKLGQARGVVLLAASRSGMEVGEYAARLVKKSVVGVGNASKD 120

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGY 162
           Q+H M++ ++P +   G DAADALA+A+ HA+H  S  
Sbjct: 121 QVHAMVQRMLPGARIAGPDAADALAVAITHAHHLASAR 158


>gi|126174262|ref|YP_001050411.1| Holliday junction resolvase [Shewanella baltica OS155]
 gi|153000825|ref|YP_001366506.1| Holliday junction resolvase [Shewanella baltica OS185]
 gi|160875533|ref|YP_001554849.1| Holliday junction resolvase [Shewanella baltica OS195]
 gi|217973218|ref|YP_002357969.1| Holliday junction resolvase [Shewanella baltica OS223]
 gi|304408865|ref|ZP_07390486.1| crossover junction endodeoxyribonuclease RuvC [Shewanella baltica
           OS183]
 gi|307302868|ref|ZP_07582623.1| crossover junction endodeoxyribonuclease RuvC [Shewanella baltica
           BA175]
 gi|166233297|sp|A3D479|RUVC_SHEB5 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|166233298|sp|A6WNQ4|RUVC_SHEB8 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|189046079|sp|A9L3H9|RUVC_SHEB9 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|254767485|sp|B8EA73|RUVC_SHEB2 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|125997467|gb|ABN61542.1| crossover junction endodeoxyribonuclease RuvC [Shewanella baltica
           OS155]
 gi|151365443|gb|ABS08443.1| crossover junction endodeoxyribonuclease RuvC [Shewanella baltica
           OS185]
 gi|160861055|gb|ABX49589.1| crossover junction endodeoxyribonuclease RuvC [Shewanella baltica
           OS195]
 gi|217498353|gb|ACK46546.1| crossover junction endodeoxyribonuclease RuvC [Shewanella baltica
           OS223]
 gi|304352686|gb|EFM17083.1| crossover junction endodeoxyribonuclease RuvC [Shewanella baltica
           OS183]
 gi|306913228|gb|EFN43650.1| crossover junction endodeoxyribonuclease RuvC [Shewanella baltica
           BA175]
 gi|315267721|gb|ADT94574.1| crossover junction endodeoxyribonuclease RuvC [Shewanella baltica
           OS678]
          Length = 173

 Score =  206 bits (525), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 63/154 (40%), Positives = 102/154 (66%), Gaps = 1/154 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+G+DPG R TG+G++   G +  ++ SG I +   + L  RL Q+++G+T++I+ ++P+
Sbjct: 4   ILGVDPGSRITGYGVIQCQGRHQIYLGSGCIRTSS-EELPGRLKQIFDGITEIIRQYQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E+VF+ K+A + LKLGQAR  AI++  +A +PV+EY+   IK AV+G G   K Q+
Sbjct: 63  EFAIERVFMAKNADSALKLGQARGAAIVAATVANLPVAEYSATQIKSAVVGTGRAQKAQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
             M++ L+        DAADAL +AVCH + + S
Sbjct: 123 QHMIQQLLKLPAAPQADAADALGVAVCHYHTSQS 156


>gi|88801305|ref|ZP_01116833.1| Holliday junction resolvase [Polaribacter irgensii 23-P]
 gi|88781963|gb|EAR13140.1| Holliday junction resolvase [Polaribacter irgensii 23-P]
          Length = 211

 Score =  206 bits (525), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 55/154 (35%), Positives = 87/154 (56%), Gaps = 1/154 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG    G+G++ V G  + F+    ++         +L  ++E   ++I  + P+
Sbjct: 34  ILGIDPGTTIMGFGLIKVIGKKMEFIQMNELMLKKYDDHYLKLKLIFERTIELIDTYNPD 93

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E  F  K+  + LKLG+A+ +A+ +     IP++EY P  IK AV G G+  K+Q+
Sbjct: 94  EIAIEAPFFGKNVQSMLKLGRAQGVAMAAGLSREIPITEYLPKKIKMAVTGNGNASKEQV 153

Query: 127 HMMLKMLMPE-SFFKGKDAADALAIAVCHAYHAN 159
            MMLK L+   +  K  DA D LA AVCH Y++ 
Sbjct: 154 AMMLKSLLNLKTLPKNLDATDGLAAAVCHFYNSG 187


>gi|325105437|ref|YP_004275091.1| crossover junction endodeoxyribonuclease RuvC [Pedobacter saltans
           DSM 12145]
 gi|324974285|gb|ADY53269.1| crossover junction endodeoxyribonuclease RuvC [Pedobacter saltans
           DSM 12145]
          Length = 188

 Score =  205 bits (524), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 49/160 (30%), Positives = 88/160 (55%), Gaps = 1/160 (0%)

Query: 2   RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
            K   I+GIDPG    G+G++   G  +  ++ G I          +L +++E  + +I+
Sbjct: 6   SKERIILGIDPGTAVMGYGLIKETGSKISLINLGVIRLDHLDDHPLKLQRIFEKTSLLIE 65

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
            ++P+  A+E  F  K+    LKLG+A+ +A+ +     +P+ EY+P  +K+A+ G G+ 
Sbjct: 66  QYKPDCMALEAPFYGKNVQVMLKLGRAQGVAMAAGLAKNLPIMEYSPKKVKQAITGNGNA 125

Query: 122 DKKQIHMMLKMLMP-ESFFKGKDAADALAIAVCHAYHANS 160
            K+Q+  ML  L+  +   +  DA D LA+AVCH++   S
Sbjct: 126 GKEQVAAMLMQLLDFKETPEFLDATDGLAVAVCHSFQKVS 165


>gi|254495252|ref|ZP_05108176.1| crossover junction endodeoxyribonuclease RuvC [Polaribacter sp.
           MED152]
 gi|85819605|gb|EAQ40762.1| crossover junction endodeoxyribonuclease RuvC [Polaribacter sp.
           MED152]
          Length = 184

 Score =  205 bits (524), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 53/160 (33%), Positives = 88/160 (55%), Gaps = 1/160 (0%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M     I+GIDPG    G+G++ + G  + F+    ++         +L  ++E   ++I
Sbjct: 1   MATEKIILGIDPGTTIMGFGLIKIVGKKMEFIQMNELILKKYDDHYLKLKLIFERTVELI 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             + P+E A+E  F  K+  + LKLG+A+ +A+ +     IP++EY P  IK A+ G G+
Sbjct: 61  DTYHPDEIAIEAPFFGKNVQSMLKLGRAQGVAMAAGLSREIPITEYLPKKIKMAITGNGN 120

Query: 121 GDKKQIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHAN 159
             K+Q+ +MLK L+   +  K  DA D LA AVCH Y++ 
Sbjct: 121 ASKEQVALMLKSLLNLKTLPKNLDATDGLAAAVCHYYNSG 160


>gi|330959264|gb|EGH59524.1| Holliday junction resolvase [Pseudomonas syringae pv. maculicola
           str. ES4326]
          Length = 174

 Score =  205 bits (524), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 63/154 (40%), Positives = 96/154 (62%), Gaps = 1/154 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G+V   G    +V+SG I +     L  RL  +Y G+ +VIK + P 
Sbjct: 4   ILGIDPGSRITGYGVVRDTGRGCVYVASGCIRTGSG-ELHERLQIVYRGVREVIKTYGPV 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
              +E+VF+ ++A + LKLGQAR  AI++ A   + ++EY    +K+AV G G  +K+Q+
Sbjct: 63  TMGIEKVFMARNADSALKLGQARGGAIVAGAEEALEIAEYTATQVKQAVAGTGGANKEQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
            MM+  L+  +     DA+DALAIA+CHA+  +S
Sbjct: 123 MMMVMHLLKLTQKPQIDASDALAIALCHAHTRSS 156


>gi|116253725|ref|YP_769563.1| Holliday junction resolvase [Rhizobium leguminosarum bv. viciae
           3841]
 gi|241206201|ref|YP_002977297.1| Holliday junction resolvase [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|123081788|sp|Q1MC56|RUVC_RHIL3 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|115258373|emb|CAK09476.1| putative crossover Holliday junction endodeoxyribonuclease RuvC
           [Rhizobium leguminosarum bv. viciae 3841]
 gi|240860091|gb|ACS57758.1| crossover junction endodeoxyribonuclease RuvC [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 169

 Score =  205 bits (523), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 109/166 (65%), Positives = 139/166 (83%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M+ +IRI+GIDPGLRRTGWGI++ +G++L FV+SGT+ S     LA RLCQL++GL +++
Sbjct: 1   MQNTIRIVGIDPGLRRTGWGIIETSGNSLRFVASGTVTSDGDMDLASRLCQLHDGLAEIV 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
            +++P+EAAVEQ FVNKDAVATLKLGQAR IA+L PA A +PVSEYAPN +KKAVIGVGH
Sbjct: 61  HSYKPDEAAVEQTFVNKDAVATLKLGQARGIAMLVPARAGLPVSEYAPNAVKKAVIGVGH 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
           G+K+QIHMMLK+LMP+  FKG DAADALAIA+CHA++  S   + A
Sbjct: 121 GEKQQIHMMLKILMPKVEFKGNDAADALAIAICHAHNRGSNRMRQA 166


>gi|288939915|ref|YP_003442155.1| crossover junction endodeoxyribonuclease RuvC [Allochromatium
           vinosum DSM 180]
 gi|288895287|gb|ADC61123.1| crossover junction endodeoxyribonuclease RuvC [Allochromatium
           vinosum DSM 180]
          Length = 178

 Score =  205 bits (523), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 61/164 (37%), Positives = 93/164 (56%), Gaps = 1/164 (0%)

Query: 6   RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           RI+GIDPG R TG+G++D  G +   V+SG I          RL  +++ +  ++  ++P
Sbjct: 10  RILGIDPGSRNTGFGVIDTDGHHSVRVASGCIR-VGEHPWPDRLGLIFDQVAAIVAEYQP 68

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
            E AVEQ+   +D  A LK+GQAR   + +       V EY+P ++K AV+G G  DK Q
Sbjct: 69  HEMAVEQLIFARDPTAALKIGQARGAVLCAGLKGGAIVHEYSPKSVKLAVVGSGGADKSQ 128

Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQD 169
           +  M+++L+      G+D ADALAIA+CHA+       K A+  
Sbjct: 129 VQHMVRVLLALPETPGEDEADALAIALCHAHSMGIPARKRAAAS 172


>gi|281420104|ref|ZP_06251103.1| crossover junction endodeoxyribonuclease RuvC [Prevotella copri DSM
           18205]
 gi|281405904|gb|EFB36584.1| crossover junction endodeoxyribonuclease RuvC [Prevotella copri DSM
           18205]
          Length = 191

 Score =  205 bits (523), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 54/156 (34%), Positives = 84/156 (53%), Gaps = 3/156 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG    G+G++ + G+    V  G I          RL ++++ +T +I ++ P+
Sbjct: 11  ILGIDPGTNVMGYGVIRIIGNKAELVVMGVIDMRKESDPYLRLGKIFDRVTGIIDSYLPD 70

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E  F  K+  + LKLG+A+ +AI +     +P+ EYAP  IK A+ G G   K+Q+
Sbjct: 71  EMAIEAPFFGKNVQSMLKLGRAQGVAIAAAIHHSVPIHEYAPLKIKMAITGQGQASKEQV 130

Query: 127 HMMLKMLMP---ESFFKGKDAADALAIAVCHAYHAN 159
             ML+ L+    +   K  DA DAL  A CH    N
Sbjct: 131 AGMLQRLLHIQQDEMPKFMDATDALGAAYCHFLQMN 166


>gi|257452147|ref|ZP_05617446.1| crossover junction endodeoxyribonuclease ruvC [Fusobacterium sp.
           3_1_5R]
 gi|317058692|ref|ZP_07923177.1| crossover junction endodeoxyribonuclease ruvC [Fusobacterium sp.
           3_1_5R]
 gi|313684368|gb|EFS21203.1| crossover junction endodeoxyribonuclease ruvC [Fusobacterium sp.
           3_1_5R]
          Length = 189

 Score =  205 bits (522), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 43/136 (31%), Positives = 74/136 (54%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPG    G+G++D        V  G I +     +  RL +++E L+ +I+ ++
Sbjct: 1   MRILGIDPGTAIVGYGVIDYEKGKFHVVDYGCIYTEKDLPMEDRLVKVHEELSSLIQKYQ 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           PEE AVE++F  K+    + +GQAR + +L+  L  + +  Y P  +K  + G G  +KK
Sbjct: 61  PEEMAVEELFYFKNNKTVISVGQARGVIVLTGRLHGLQIHSYTPLQVKMGITGYGRAEKK 120

Query: 125 QIHMMLKMLMPESFFK 140
           QI  M++  +  S   
Sbjct: 121 QIQQMVQRFLGLSEIP 136


>gi|253583871|ref|ZP_04861069.1| crossover junction endodeoxyribonuclease ruvC [Fusobacterium varium
           ATCC 27725]
 gi|251834443|gb|EES63006.1| crossover junction endodeoxyribonuclease ruvC [Fusobacterium varium
           ATCC 27725]
          Length = 190

 Score =  205 bits (522), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 39/136 (28%), Positives = 73/136 (53%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPG    G+G++D   +    +  G + +     +  RLCQ+YE L+++IK + 
Sbjct: 1   MRVLGIDPGTAIVGFGVIDYENNKFKVIDYGCLYTDKDTPMEERLCQIYEKLSELIKKYN 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           PE  A+E++F  K+    + +GQAR + +L      + +  Y P  +K  + G G  +KK
Sbjct: 61  PEHMAIEELFFFKNNKTVISVGQARGVLLLCGKQNGLKIQGYTPLQVKTGITGYGKAEKK 120

Query: 125 QIHMMLKMLMPESFFK 140
           Q+ +M++  +      
Sbjct: 121 QVQLMVQKFLGMKELP 136


>gi|120598879|ref|YP_963453.1| Holliday junction resolvase [Shewanella sp. W3-18-1]
 gi|146293035|ref|YP_001183459.1| Holliday junction resolvase [Shewanella putrefaciens CN-32]
 gi|166233300|sp|A4Y6S7|RUVC_SHEPC RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|166233302|sp|A1RJQ4|RUVC_SHESW RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|120558972|gb|ABM24899.1| crossover junction endodeoxyribonuclease RuvC [Shewanella sp.
           W3-18-1]
 gi|145564725|gb|ABP75660.1| crossover junction endodeoxyribonuclease RuvC [Shewanella
           putrefaciens CN-32]
 gi|319426435|gb|ADV54509.1| crossover junction endodeoxyribonuclease RuvC [Shewanella
           putrefaciens 200]
          Length = 173

 Score =  205 bits (522), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 64/154 (41%), Positives = 103/154 (66%), Gaps = 1/154 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+G+DPG R TG+G++   G +  ++ SG I +   + L+ RL Q+++G+T++I+ ++P+
Sbjct: 4   ILGVDPGSRITGYGVIQCQGRHQIYLGSGCIRTSS-EELSGRLKQIFDGITEIIRQYQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E+VF+ K+A + LKLGQAR  AI++  +A +PV+EY+   IK AV+G G   K+QI
Sbjct: 63  EFAIERVFMAKNADSALKLGQARGAAIVAATVANLPVAEYSATQIKSAVVGTGRAKKEQI 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
             M++ L+        DAADAL +AVCH +   S
Sbjct: 123 QHMIQQLLKLPAAPQADAADALGVAVCHYHTRQS 156


>gi|260220027|emb|CBA27153.1| Crossover junction endodeoxyribonuclease ruvC [Curvibacter putative
           symbiont of Hydra magnipapillata]
          Length = 182

 Score =  205 bits (522), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 70/158 (44%), Positives = 101/158 (63%), Gaps = 2/158 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQS--LAFRLCQLYEGLTDVIKN 62
           +RI+GIDPGLR TG+G+VDV G ++ +V+SGTI +    +  L  RL  L++G+ +V++ 
Sbjct: 1   MRILGIDPGLRTTGFGVVDVVGADVRYVASGTIRTEHLDTRALPARLKILFDGIGEVVER 60

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
           +RP  A+VE VFVN +  +TL LGQAR   + +   A +PV+EY    +K+AV G G   
Sbjct: 61  YRPTCASVEIVFVNVNPQSTLLLGQARGALVTALVCANLPVAEYTALQMKQAVAGHGRAH 120

Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           K QI  M+K L+      G DAADAL +A+ HA+   S
Sbjct: 121 KDQIQEMVKRLLHLPGLPGPDAADALGLAITHAHAGKS 158


>gi|296137140|ref|YP_003644382.1| crossover junction endodeoxyribonuclease RuvC [Thiomonas intermedia
           K12]
 gi|295797262|gb|ADG32052.1| crossover junction endodeoxyribonuclease RuvC [Thiomonas intermedia
           K12]
          Length = 195

 Score =  204 bits (521), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 67/173 (38%), Positives = 95/173 (54%), Gaps = 9/173 (5%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGL  TG+G++D  G  L + +SG I       L  RL  L++G+++V +   
Sbjct: 1   MRILGIDPGLNTTGYGVIDAHGQRLGYQASGAIRIPKGT-LPERLKTLFDGVSEVARLAD 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
            E A VE VFVN +  +TL LGQAR  AI +     +PV EY    +KK+++G G   K 
Sbjct: 60  AEVAVVEIVFVNVNPQSTLLLGQARGAAIAALVAQGLPVVEYTALQLKKSIVGYGRASKS 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAY--------HANSGYYKIASQD 169
           QI  M+  L+      G DAADAL +A+CHA+        H  S    + + D
Sbjct: 120 QIQEMVMRLLALPGQPGPDAADALGLAICHAHAQRGLAALHRASSPANVGTAD 172


>gi|328948461|ref|YP_004365798.1| Crossover junction endodeoxyribonuclease ruvC [Treponema
           succinifaciens DSM 2489]
 gi|328448785|gb|AEB14501.1| Crossover junction endodeoxyribonuclease ruvC [Treponema
           succinifaciens DSM 2489]
          Length = 161

 Score =  204 bits (521), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 55/160 (34%), Positives = 81/160 (50%), Gaps = 1/160 (0%)

Query: 3   KSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
           K  RIIGIDPGL  TG+GI+D     +  VS G I +    S   RL  +Y  L  ++  
Sbjct: 2   KERRIIGIDPGLAHTGFGIIDCENSRISLVSYGVIETSSNDSHEVRLFYIYNKLLAILNE 61

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
           +RP EA +E +F  ++  + L + +A+ +  L      IP+  Y+PN IK AV G    D
Sbjct: 62  FRPTEAEMETLFFARNTTSALAVAEAKGVVNLCLVQQAIPIFMYSPNQIKCAVTGTKTAD 121

Query: 123 KKQIHMMLKMLMPESFFK-GKDAADALAIAVCHAYHANSG 161
           K  +   +++L+          AADALA A+ H +   S 
Sbjct: 122 KDTVARYVQLLLNLKQPPRPDHAADALAGAITHFHSTLSA 161


>gi|298529993|ref|ZP_07017395.1| crossover junction endodeoxyribonuclease RuvC [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509367|gb|EFI33271.1| crossover junction endodeoxyribonuclease RuvC [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 170

 Score =  204 bits (521), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 55/155 (35%), Positives = 93/155 (60%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G+V      L  + +GTI +  +  L+ RL  ++  +  +I  + P+
Sbjct: 10  ILGIDPGSRCTGYGVVRETSGCLELLGTGTIRTNGQDDLSTRLDTIFTRICSLIHEFSPD 69

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           +AAVE+VF +K+A + LKLGQAR   I++ +  ++PV  Y P  +KK+++G G   K+Q+
Sbjct: 70  QAAVEEVFTSKNASSALKLGQARGAVIVACSHQKVPVYSYEPTLVKKSLVGGGRAGKEQV 129

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANSG 161
             M+  ++       +DA+DALA+A+ H     + 
Sbjct: 130 AFMVAQMLGCKPRWAQDASDALAVAIAHLNQRRAA 164


>gi|288924951|ref|ZP_06418887.1| crossover junction endodeoxyribonuclease RuvC [Prevotella buccae
           D17]
 gi|315607984|ref|ZP_07882977.1| crossover junction endoribonuclease subunit C [Prevotella buccae
           ATCC 33574]
 gi|288338141|gb|EFC76491.1| crossover junction endodeoxyribonuclease RuvC [Prevotella buccae
           D17]
 gi|315250453|gb|EFU30449.1| crossover junction endoribonuclease subunit C [Prevotella buccae
           ATCC 33574]
          Length = 186

 Score =  204 bits (521), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 54/162 (33%), Positives = 83/162 (51%), Gaps = 3/162 (1%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M+    I+GIDPG    G+G++ V  +    V  G I     +    RL ++++ +T VI
Sbjct: 1   MKAEKIILGIDPGTNVMGYGVLRVVDNKASLVVMGIIDMRKERDPYLRLGKIFDRVTGVI 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             + P+E A+E  F  K+  + LKLG+A+ +AI +     IP+ EYAP  IK ++ G G 
Sbjct: 61  DEYLPDEMAIEAPFFGKNVQSMLKLGRAQGVAIAAAIHHDIPIHEYAPLKIKLSITGQGK 120

Query: 121 GDKKQIHMMLKMLMP---ESFFKGKDAADALAIAVCHAYHAN 159
             K+Q+  ML+ ++        K  DA DAL  A CH     
Sbjct: 121 ASKEQVAEMLRRILNISDGDMPKFMDATDALGAAYCHYLQMG 162


>gi|282879013|ref|ZP_06287775.1| crossover junction endodeoxyribonuclease RuvC [Prevotella buccalis
           ATCC 35310]
 gi|281298848|gb|EFA91255.1| crossover junction endodeoxyribonuclease RuvC [Prevotella buccalis
           ATCC 35310]
          Length = 197

 Score =  204 bits (521), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 51/156 (32%), Positives = 78/156 (50%), Gaps = 3/156 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG    G+G++ +       V+ G I          RL  +++ +T +I  + P+
Sbjct: 14  ILGIDPGTNVMGYGVIKILERKPSMVAMGVIDMRKTDDPYLRLGHIFDRITGIIDEYLPD 73

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E  F  K+  + LKLG+A+ +AI +     +P+ EYAP  IK A+ G G   K+Q+
Sbjct: 74  EMAIEAPFFGKNVQSMLKLGRAQGVAIAAAIHHDVPIHEYAPLKIKMAITGQGQASKEQV 133

Query: 127 HMMLKMLMPE---SFFKGKDAADALAIAVCHAYHAN 159
             ML+ L+           DA DAL  A CH     
Sbjct: 134 AGMLQRLLKINQSEMPHFMDATDALGAAYCHFLQMG 169


>gi|288927303|ref|ZP_06421150.1| crossover junction endodeoxyribonuclease RuvC [Prevotella sp. oral
           taxon 317 str. F0108]
 gi|288330137|gb|EFC68721.1| crossover junction endodeoxyribonuclease RuvC [Prevotella sp. oral
           taxon 317 str. F0108]
          Length = 190

 Score =  204 bits (521), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 56/156 (35%), Positives = 81/156 (51%), Gaps = 3/156 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG    G+G++ V G     V+ G I          RL  ++E ++ +I  + P+
Sbjct: 10  IMGIDPGTTLMGYGVIRVVGKKAQMVAMGVIDLRKMPDPYLRLGHIFERVSGIIDAYLPD 69

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E  F  K+  + LKLG+A+ +AI +     IP+ EYAP  IK A+ G G   K+Q+
Sbjct: 70  ELAIEAPFFGKNVQSMLKLGRAQGVAIAAAIQRDIPIHEYAPLKIKMAITGQGQASKEQV 129

Query: 127 HMMLKMLMPES---FFKGKDAADALAIAVCHAYHAN 159
             MLK ++  S     K  DA DAL  A CH     
Sbjct: 130 AGMLKRMLKLSDDDMPKFMDATDALGAAYCHFLQMG 165


>gi|229496128|ref|ZP_04389849.1| crossover junction endodeoxyribonuclease RuvC [Porphyromonas
           endodontalis ATCC 35406]
 gi|229316959|gb|EEN82871.1| crossover junction endodeoxyribonuclease RuvC [Porphyromonas
           endodontalis ATCC 35406]
          Length = 192

 Score =  204 bits (520), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 52/171 (30%), Positives = 93/171 (54%), Gaps = 6/171 (3%)

Query: 2   RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
            K   I+G+DPG +  G+G++ +       ++ G I     +    RL  ++  +T +I+
Sbjct: 4   AKERIILGVDPGTQLMGYGLIRITASQPKLLALGVIELSKYEDHYLRLSHIFNRITGLIE 63

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
            + P+E A+E  F  K+  + LKLG+A+  A+++     +P++EYAP  IK+++ G G  
Sbjct: 64  EFLPDEMALEAPFYGKNVQSMLKLGRAQGAAMIAGLQRGLPITEYAPLRIKQSITGSGSA 123

Query: 122 DKKQIHMMLKMLMPES---FFKGKDAADALAIAVCHAYHANSGYYKIASQD 169
            K+Q+  ML+ ++        K  DA D LA+A+CH Y  ++    +AS D
Sbjct: 124 SKEQVAAMLQRILAIPAADMPKHLDATDGLAVALCHFYQTSN---TLASSD 171


>gi|329848090|ref|ZP_08263118.1| crossover junction endodeoxyribonuclease RuvC [Asticcacaulis
           biprosthecum C19]
 gi|328843153|gb|EGF92722.1| crossover junction endodeoxyribonuclease RuvC [Asticcacaulis
           biprosthecum C19]
          Length = 176

 Score =  204 bits (520), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 80/170 (47%), Positives = 107/170 (62%), Gaps = 4/170 (2%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M   +RI+G+DPGLRR GWG++DV G  L +V+ G I       LA RL  L+EG+  VI
Sbjct: 1   MMNRVRILGLDPGLRRLGWGVIDVEGARLSWVAHGVIEPPQGDDLAVRLLNLFEGVNAVI 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             W+P+EAA+E+ FVN +  +TLKLG ARA A+L+PA A + V+EYA   IKK+V+G G 
Sbjct: 61  AQWQPDEAAIEETFVNMNPSSTLKLGHARAAAMLAPARAGLVVAEYAALDIKKSVVGAGR 120

Query: 121 GDKKQIHMMLKMLMPESFFK----GKDAADALAIAVCHAYHANSGYYKIA 166
            +K Q+  M+K L+P +         DAADALA AV HA+       K A
Sbjct: 121 AEKDQVLFMIKRLLPMAGKTEAGLPTDAADALACAVTHAHKRKMNGLKAA 170


>gi|288800187|ref|ZP_06405646.1| crossover junction endodeoxyribonuclease RuvC [Prevotella sp. oral
           taxon 299 str. F0039]
 gi|288333435|gb|EFC71914.1| crossover junction endodeoxyribonuclease RuvC [Prevotella sp. oral
           taxon 299 str. F0039]
          Length = 192

 Score =  204 bits (520), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 52/156 (33%), Positives = 80/156 (51%), Gaps = 3/156 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG    G+G++ V  +    ++ G I          RL  +++ +  +I+ + P+
Sbjct: 12  ILGIDPGTNIMGYGVIKVVSNKAEMIAMGIIDMRKMTDPYLRLGNIFQRVKGIIEEYLPD 71

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E  F  K+  + LKLG+A+ +AI +     IP+ EYAP  IK A+ G G   K+Q+
Sbjct: 72  EMAIEAPFFGKNIQSMLKLGRAQGVAIAAAINHDIPIFEYAPLKIKMAITGQGQASKEQV 131

Query: 127 HMMLKMLMPESF---FKGKDAADALAIAVCHAYHAN 159
             ML  L+        K  DA DAL +A CH     
Sbjct: 132 ADMLLRLLKLDKGNLPKFMDATDALGVAYCHYLQTG 167


>gi|300770216|ref|ZP_07080095.1| crossover junction endoribonuclease subunit C [Sphingobacterium
           spiritivorum ATCC 33861]
 gi|300762692|gb|EFK59509.1| crossover junction endoribonuclease subunit C [Sphingobacterium
           spiritivorum ATCC 33861]
          Length = 189

 Score =  204 bits (520), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 54/159 (33%), Positives = 89/159 (55%), Gaps = 1/159 (0%)

Query: 2   RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
            K   I+GIDPG    G+G+V   G  +  +S G I        A +L ++++  + +I+
Sbjct: 6   AKERIILGIDPGTVVLGYGLVKETGKKISLISLGVIKMGHLDDHALKLQRIFKKTSALIE 65

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
            ++P+  A+E  F  K+    LKLG+A+ +A+ +     IP+ EY+P  IK++V G G+ 
Sbjct: 66  EYKPDCVALEAPFYGKNIQVMLKLGRAQGVAMAAALNHDIPIFEYSPRKIKQSVTGNGNA 125

Query: 122 DKKQIHMMLKMLMP-ESFFKGKDAADALAIAVCHAYHAN 159
            K+Q+  MLK L+      +  DA D LA+AVCH++  N
Sbjct: 126 TKEQVAAMLKTLLSFNETPEFLDATDGLAVAVCHSFQQN 164


>gi|304383181|ref|ZP_07365654.1| crossover junction endoribonuclease subunit C [Prevotella marshii
           DSM 16973]
 gi|304335652|gb|EFM01909.1| crossover junction endoribonuclease subunit C [Prevotella marshii
           DSM 16973]
          Length = 187

 Score =  204 bits (519), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 57/163 (34%), Positives = 89/163 (54%), Gaps = 4/163 (2%)

Query: 1   MRKSIR-IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDV 59
           M K+ R I+GIDPG    G+G++ +  +    +S G I          RL +++E +T +
Sbjct: 1   MEKAERVILGIDPGTNVMGYGVIGITNNKAHMISMGVIDMRKMADPYLRLGKIFERVTGI 60

Query: 60  IKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVG 119
           I+++ P+E A+E  F  K+  + LKLG+A+ +AI +     IP+ EYAP  IK A+ G G
Sbjct: 61  IESFLPDELAIEAPFFGKNVQSMLKLGRAQGVAIAAAIRRDIPIHEYAPLKIKVAITGQG 120

Query: 120 HGDKKQIHMMLKMLMPE---SFFKGKDAADALAIAVCHAYHAN 159
              K+Q+  ML+ L+        +  DA DALA A CH   + 
Sbjct: 121 QASKQQVADMLRRLLNLHKEELPRFMDATDALAAAYCHFLQSG 163


>gi|326336086|ref|ZP_08202258.1| crossover junction endoribonuclease subunit C [Capnocytophaga sp.
           oral taxon 338 str. F0234]
 gi|325691595|gb|EGD33562.1| crossover junction endoribonuclease subunit C [Capnocytophaga sp.
           oral taxon 338 str. F0234]
          Length = 181

 Score =  204 bits (519), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 52/154 (33%), Positives = 89/154 (57%), Gaps = 1/154 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG    G+GI+ V  + + FV    ++     +   +L  ++E  T++I N++P+
Sbjct: 5   ILGIDPGTTVMGFGIIQVIKNQMKFVQMNELLLNKYDNHYLKLKLIFERTTELIDNYKPD 64

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E  F  K+  + LKLG+A+ +A+ +     +P++EY P  +K A+ G G+  K+Q+
Sbjct: 65  ELAIEAPFFGKNVQSMLKLGRAQGVAMAAGLAREVPITEYEPKKVKMAITGNGNATKEQV 124

Query: 127 HMMLKMLMPESFFKGK-DAADALAIAVCHAYHAN 159
             ML+ L+    F    DA D LA+AVCH ++  
Sbjct: 125 AKMLQQLLNFKDFPSHLDATDGLAVAVCHFFNGG 158


>gi|169831523|ref|YP_001717505.1| crossover junction endodeoxyribonuclease RuvC [Candidatus
           Desulforudis audaxviator MP104C]
 gi|169638367|gb|ACA59873.1| crossover junction endodeoxyribonuclease RuvC [Candidatus
           Desulforudis audaxviator MP104C]
          Length = 162

 Score =  204 bits (519), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 54/154 (35%), Positives = 92/154 (59%), Gaps = 1/154 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           ++G+DPGL  TG+G++ V G++   ++   + +      A RL  LY  +  + +  RP+
Sbjct: 4   VMGLDPGLATTGYGVLQVTGNSYEVIAYDCLRTPAGLPDADRLEMLYRLIATLHERHRPQ 63

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E AVEQ+F +++    L++GQAR +A+L+ A A   + EY P  IK+ + G G  DKKQ+
Sbjct: 64  EVAVEQLFFHRNVTTALQVGQARGVALLAAAQAGARIIEYTPLQIKQGITGSGRADKKQV 123

Query: 127 HMMLKMLMPESF-FKGKDAADALAIAVCHAYHAN 159
             M++ ++  +   +  D ADALA+A+CH +H  
Sbjct: 124 QYMVRTILGLAVTPQPDDVADALAVALCHCHHRR 157


>gi|194335780|ref|YP_002017574.1| crossover junction endodeoxyribonuclease RuvC [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|238693392|sp|B4SDW6|RUVC_PELPB RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|194308257|gb|ACF42957.1| crossover junction endodeoxyribonuclease RuvC [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 191

 Score =  204 bits (519), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 56/157 (35%), Positives = 83/157 (52%), Gaps = 1/157 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + ++G+DPG R TG+G++   G     +S G I    R S A R+ Q+Y  L  VI ++ 
Sbjct: 1   MVVLGVDPGSRLTGYGVIRQEGTFFTVLSCGVIRLHPRSSHAERIGQIYRELEAVITDYA 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           PE  A+E VF++++  + LKLGQ R   I       + + EYAP  +K AV G G   K+
Sbjct: 61  PECVALETVFLSRNVQSALKLGQVRGAVIALAMNRNLLLHEYAPREVKSAVTGKGAASKE 120

Query: 125 QIHMML-KMLMPESFFKGKDAADALAIAVCHAYHANS 160
           Q+  M+ +ML      +  D  DAL IA+C      S
Sbjct: 121 QVAFMVARMLALNPVPEPFDVTDALGIALCDLLRGGS 157


>gi|91218360|ref|ZP_01255304.1| Holliday junction resolvase [Psychroflexus torquis ATCC 700755]
 gi|91183498|gb|EAS69897.1| Holliday junction resolvase [Psychroflexus torquis ATCC 700755]
          Length = 184

 Score =  204 bits (519), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 49/160 (30%), Positives = 90/160 (56%), Gaps = 1/160 (0%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M     I+GIDPG    G+G++++  + + F+    ++         +L  +++   D+I
Sbjct: 1   MATERIILGIDPGTTIMGFGVIEIVNNKMKFIQLNELMLKKYDDPYTKLKLIFDRTIDLI 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             + P+E A+E  F  K+  + LKLG+A+ +A+ +    ++P++EY P  IK A+ G G+
Sbjct: 61  DTFHPDEIAIEAPFFGKNVQSMLKLGRAQGVAMAAGLSRQVPITEYLPKKIKMAITGNGN 120

Query: 121 GDKKQIHMMLKMLMP-ESFFKGKDAADALAIAVCHAYHAN 159
             K+Q+  ML+ ++  +   K  D+ D LA AVCH Y++N
Sbjct: 121 ASKEQVAKMLQQMLKIKELPKNLDSTDGLAAAVCHFYNSN 160


>gi|315187234|gb|EFU20991.1| crossover junction endodeoxyribonuclease RuvC [Spirochaeta
           thermophila DSM 6578]
          Length = 169

 Score =  204 bits (519), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 50/165 (30%), Positives = 93/165 (56%), Gaps = 1/165 (0%)

Query: 6   RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           R +GIDPGL  TG+G+++  G    ++ +GTI +    + + RL +++  + +++  + P
Sbjct: 3   RYLGIDPGLATTGYGVIETDGRGHKYIIAGTIRTSSGHTQSERLLKIFRHVQELLLKYEP 62

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
           E   +E++F  ++  +   + QA  +  L+ A+  IPV  YAP  +K+A++G G  DK +
Sbjct: 63  EAIIMEELFFARNTTSAFYVAQAMGVVSLAAAMEDIPVYTYAPQMVKQAIVGHGRADKAE 122

Query: 126 IHMMLKMLMPESFFK-GKDAADALAIAVCHAYHANSGYYKIASQD 169
           I   L++L+     K    A+DALAIA+CH +   + +     +D
Sbjct: 123 IQRFLRLLLNLPDTKMSDHASDALAIALCHVHQHGTPFATQGEED 167


>gi|212696230|ref|ZP_03304358.1| hypothetical protein ANHYDRO_00766 [Anaerococcus hydrogenalis DSM
           7454]
 gi|325846639|ref|ZP_08169554.1| crossover junction endodeoxyribonuclease RuvC [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
 gi|212676859|gb|EEB36466.1| hypothetical protein ANHYDRO_00766 [Anaerococcus hydrogenalis DSM
           7454]
 gi|325481397|gb|EGC84438.1| crossover junction endodeoxyribonuclease RuvC [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
          Length = 164

 Score =  203 bits (518), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 42/136 (30%), Positives = 80/136 (58%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + ++GIDPG+   G+G+++V G+    + +G + +  +     RL  LY+ L+D+I+ ++
Sbjct: 1   MIVLGIDPGIAIMGYGVLEVNGNRYNVLENGVVTTSAKTKTPERLEILYKNLSDIIRQYK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+E A+E++F N++    + +G AR I +L   +  +P+ EY P  IK+A+ G G  +KK
Sbjct: 61  PDEFAIEELFFNQNVKTAITVGHARGIQVLCAQMNNLPIYEYTPLQIKQAITGFGRANKK 120

Query: 125 QIHMMLKMLMPESFFK 140
           Q+   +  L+  S   
Sbjct: 121 QMQETITTLLNLSEIP 136


>gi|227538683|ref|ZP_03968732.1| crossover junction endodeoxyribonuclease [Sphingobacterium
           spiritivorum ATCC 33300]
 gi|227241602|gb|EEI91617.1| crossover junction endodeoxyribonuclease [Sphingobacterium
           spiritivorum ATCC 33300]
          Length = 189

 Score =  203 bits (518), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 53/159 (33%), Positives = 89/159 (55%), Gaps = 1/159 (0%)

Query: 2   RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
            K   I+GIDPG    G+G++   G  +  +S G I        A +L ++++  + +I+
Sbjct: 6   TKERIILGIDPGTVVLGYGLLKETGKKISLISLGVIKMGHLDDHALKLQRIFKKTSALIE 65

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
            ++P+  A+E  F  K+    LKLG+A+ +A+ +     IP+ EY+P  IK++V G G+ 
Sbjct: 66  EYKPDCVALEAPFYGKNIQVMLKLGRAQGVAMAAALNHDIPIFEYSPRKIKQSVTGNGNA 125

Query: 122 DKKQIHMMLKMLMP-ESFFKGKDAADALAIAVCHAYHAN 159
            K+Q+  MLK L+      +  DA D LA+AVCH++  N
Sbjct: 126 TKEQVAAMLKTLLSFNETPEFLDATDGLAVAVCHSFQQN 164


>gi|91793240|ref|YP_562891.1| crossover junction endodeoxyribonuclease RuvC [Shewanella
           denitrificans OS217]
 gi|123060935|sp|Q12N08|RUVC_SHEDO RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|91715242|gb|ABE55168.1| crossover junction endodeoxyribonuclease RuvC [Shewanella
           denitrificans OS217]
          Length = 173

 Score =  203 bits (518), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 65/162 (40%), Positives = 100/162 (61%), Gaps = 2/162 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+G+DPG R TG+G++   G    ++ SG I +     L  RL Q++EGLT++I+ ++PE
Sbjct: 4   ILGVDPGSRITGYGVIQCQGRQQIYLGSGCIRTSSD-ELPIRLKQIFEGLTEIIRQYQPE 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           + A+E+VF+ K+A + LKLGQAR  AI++   A +PV+EY+   IK AV+G G   K Q+
Sbjct: 63  QFAIERVFMAKNADSALKLGQARGAAIVAATFADLPVAEYSATQIKSAVVGTGRAQKAQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
             M++ L         DAADAL +A+CH YH +     +  +
Sbjct: 123 QHMIQQLFKLPAAPQADAADALGVALCH-YHTHQSLVAMGGR 163


>gi|260911196|ref|ZP_05917799.1| crossover junction endoribonuclease subunit C [Prevotella sp. oral
           taxon 472 str. F0295]
 gi|260634676|gb|EEX52763.1| crossover junction endoribonuclease subunit C [Prevotella sp. oral
           taxon 472 str. F0295]
          Length = 190

 Score =  203 bits (518), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 56/156 (35%), Positives = 81/156 (51%), Gaps = 3/156 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG    G+G++ V G     V+ G I          RL  ++E ++ +I  + P+
Sbjct: 10  ILGIDPGTTLMGYGVIRVVGKKAQMVAMGVIDLRKMPDPYLRLGHIFERVSGIIDAYLPD 69

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E  F  K+  + LKLG+A+ +AI +     IP+ EYAP  IK A+ G G   K+Q+
Sbjct: 70  ELAIEAPFFGKNVQSMLKLGRAQGVAIAAAIHRDIPIHEYAPLKIKMAITGQGQASKEQV 129

Query: 127 HMMLKMLMPES---FFKGKDAADALAIAVCHAYHAN 159
             MLK ++  S     K  DA DAL  A CH     
Sbjct: 130 AGMLKRMLKLSDDDMPKFMDATDALGAAYCHFLQMG 165


>gi|27376646|ref|NP_768175.1| Holliday junction resolvase [Bradyrhizobium japonicum USDA 110]
 gi|44888481|sp|Q89U82|RUVC_BRAJA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|27349787|dbj|BAC46800.1| ruvC [Bradyrhizobium japonicum USDA 110]
          Length = 175

 Score =  203 bits (518), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 89/165 (53%), Positives = 121/165 (73%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           +R  +RIIGIDPGLRRTGWG+++  G+ L +V+ G++       L+ RL  ++EGL  V+
Sbjct: 6   IRGPVRIIGIDPGLRRTGWGVIEAEGNRLIYVACGSVEPPDDLPLSSRLLAIHEGLASVL 65

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
            + +P EAAVEQ FVNKD VATLKLGQAR +A+L+PA+  I V+EYAPN +KK V+G GH
Sbjct: 66  SDHKPMEAAVEQTFVNKDGVATLKLGQARGVAMLAPAMFGISVAEYAPNQVKKTVVGAGH 125

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
            DK+QI MMLK+L+P++     DAADALAIA+ HA+H  S   ++
Sbjct: 126 ADKQQIAMMLKILLPKAEPPSADAADALAIAITHAHHRQSTALRL 170


>gi|150024319|ref|YP_001295145.1| Holliday junction resolvase [Flavobacterium psychrophilum JIP02/86]
 gi|149770860|emb|CAL42325.1| Crossover junction endoribonuclease [Flavobacterium psychrophilum
           JIP02/86]
          Length = 184

 Score =  203 bits (518), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 49/160 (30%), Positives = 85/160 (53%), Gaps = 1/160 (0%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M     I+GIDPG    G+G++ +    + F+    ++     +   +L  ++E   ++I
Sbjct: 1   MANERIILGIDPGTTIMGFGLIKIINKKMEFLQLNELILSKYDNHYQKLKVIFERTIELI 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
               P+E A+E  F  K+  + LKLG+A+ +A+ +     IP++EY P  IK A+ G G+
Sbjct: 61  DTHNPDEIAIEAPFFGKNVQSMLKLGRAQGVAMAAGLSRDIPITEYEPKKIKMAITGNGN 120

Query: 121 GDKKQIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHAN 159
             K+Q+  ML+ L+      K  D+ D LA AVCH +++ 
Sbjct: 121 ASKEQVAKMLQQLLGLKELPKNLDSTDGLAAAVCHFFNSG 160


>gi|217077386|ref|YP_002335104.1| crossover junction endodeoxyribonuclease RuvC [Thermosipho
           africanus TCF52B]
 gi|226725477|sp|B7ICN6|RUVC_THEAB RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|217037241|gb|ACJ75763.1| crossover junction endodeoxyribonuclease RuvC [Thermosipho
           africanus TCF52B]
          Length = 157

 Score =  203 bits (518), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 41/136 (30%), Positives = 76/136 (55%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RIIG+DPG    G+GI++   + +  V+ G I +     +  RL  +Y+   ++++ + 
Sbjct: 1   MRIIGVDPGYGILGYGILEKNKNKISHVTHGVITTEKDVPMYKRLGYIYDRFVELLEEYS 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  A+E +F  K+    + +G+AR + +L+ +   IP+ E+ P  +K  V G G  DKK
Sbjct: 61  PDACAIESLFFYKNVKTAIHVGEARGVILLASSQRNIPLYEFTPYQVKNNVTGYGRADKK 120

Query: 125 QIHMMLKMLMPESFFK 140
           Q+  M+KML+  +   
Sbjct: 121 QVQKMVKMLLNLNDIP 136


>gi|312892426|ref|ZP_07751921.1| crossover junction endodeoxyribonuclease RuvC [Mucilaginibacter
           paludis DSM 18603]
 gi|311295210|gb|EFQ72384.1| crossover junction endodeoxyribonuclease RuvC [Mucilaginibacter
           paludis DSM 18603]
          Length = 227

 Score =  203 bits (517), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 50/152 (32%), Positives = 85/152 (55%), Gaps = 1/152 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG    G+G++   G  +  +S G +        A +L +++E    +I  ++P+
Sbjct: 34  ILGIDPGTAVMGYGLIKETGPRIELISLGVVKMEHLDDHALKLQRIFEKTLSLIDQYKPD 93

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+E  F  K+    LKLG+A+ +A+ +     +P+ EYAP  IK+++ G G+  K+Q+
Sbjct: 94  CMALEAPFYGKNIQVMLKLGRAQGVAMAAALSRNLPICEYAPRKIKQSITGNGNATKEQV 153

Query: 127 HMMLKMLMPESFFKG-KDAADALAIAVCHAYH 157
             ML+ L+  +      DA D LA+AVCHA+ 
Sbjct: 154 AAMLQTLLKFTETPQFLDATDGLAVAVCHAFQ 185


>gi|146299137|ref|YP_001193728.1| Holliday junction resolvase [Flavobacterium johnsoniae UW101]
 gi|146153555|gb|ABQ04409.1| crossover junction endodeoxyribonuclease RuvC [Flavobacterium
           johnsoniae UW101]
          Length = 184

 Score =  203 bits (517), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 50/160 (31%), Positives = 86/160 (53%), Gaps = 1/160 (0%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M +   I+GIDPG    G+G++ V    + F+    +      +   +L  ++E   ++I
Sbjct: 1   MTQERIILGIDPGTTIMGFGLIKVINKKMEFLQLNELQLSKYDNHYQKLRIIFERTIELI 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
           +   P+E A+E  F  K+  + LKLG+A+ +A+ +     IP++EY P  IK A+ G G+
Sbjct: 61  ETHCPDEIAIEAPFFGKNVQSMLKLGRAQGVAMAAGLSRGIPITEYEPKKIKMAITGNGN 120

Query: 121 GDKKQIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHAN 159
             K+Q+  ML+ L+      K  D+ D LA AVCH +++ 
Sbjct: 121 ASKEQVAKMLQQLLGLKELPKNLDSTDGLAAAVCHFFNSG 160


>gi|308234388|ref|ZP_07665125.1| crossover junction endodeoxyribonuclease RuvC [Atopobium vaginae
           DSM 15829]
 gi|328944204|ref|ZP_08241668.1| crossover junction endoribonuclease subunit C [Atopobium vaginae
           DSM 15829]
 gi|327491123|gb|EGF22898.1| crossover junction endoribonuclease subunit C [Atopobium vaginae
           DSM 15829]
          Length = 216

 Score =  203 bits (517), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 56/166 (33%), Positives = 93/166 (56%), Gaps = 3/166 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + I+GIDPGL  TGWGIV+  G      +   +V+   QSL  RL  +Y+G++  I+ ++
Sbjct: 1   MVILGIDPGLAHTGWGIVETRGSVYRARAYDCVVTTSAQSLPERLDAIYQGISYAIERYQ 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P   A+E++F  ++  + +    +R  A+++ A A + + EY P  IK+AV+G G  DK+
Sbjct: 61  PVHVAIEKIFFGENVRSAIDTAHSRGAALVACARAGVVLGEYTPMQIKQAVVGTGSADKR 120

Query: 125 QIHMMLKMLMPES-FFKGKDAADALAIAVCHA--YHANSGYYKIAS 167
           Q+  M++ ++      +    ADALA A+CHA         Y+ AS
Sbjct: 121 QVIFMVRNILNLDHDPRPDHCADALAAAICHASLLRTQQAAYQSAS 166


>gi|282599693|ref|ZP_05971509.2| crossover junction endodeoxyribonuclease RuvC [Providencia
           rustigianii DSM 4541]
 gi|282568251|gb|EFB73786.1| crossover junction endodeoxyribonuclease RuvC [Providencia
           rustigianii DSM 4541]
          Length = 181

 Score =  203 bits (517), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 54/135 (40%), Positives = 86/135 (63%), Gaps = 1/135 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I + V   L  RL ++Y G++++I  ++P+
Sbjct: 12  ILGIDPGSRITGYGVIRQQGRQLLYLGSGCIRTQVD-DLPSRLQRIYAGVSEIITQYQPD 70

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             ++EQVF+ K+A + LKLGQAR +AI++ A   IPV EYA   +K+ V+G G  +K Q+
Sbjct: 71  VLSIEQVFMAKNADSALKLGQARGVAIVAAANQNIPVFEYAARQVKQTVVGTGAAEKSQV 130

Query: 127 HMMLKMLMPESFFKG 141
             M+K ++  S    
Sbjct: 131 QHMVKSILKLSASPQ 145


>gi|15891224|ref|NP_356896.1| Holliday junction resolvase [Agrobacterium tumefaciens str. C58]
 gi|22096148|sp|Q8U9K4|RUVC_AGRT5 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|15159587|gb|AAK89681.1| Holliday Junction Resolvase RuvC [Agrobacterium tumefaciens str.
           C58]
          Length = 170

 Score =  203 bits (517), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 108/164 (65%), Positives = 136/164 (82%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M+K+IRIIGIDPGLRRTGWG++D  G++L FV+SGT+ S     LA RLCQL++GL +++
Sbjct: 1   MQKTIRIIGIDPGLRRTGWGVIDTLGNSLRFVASGTVTSDGDMDLASRLCQLHDGLAEIV 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
            + +P+EAAVEQ FVNKDAVATLKLGQAR IA+L PA A +PV EYAPN +KKAVIGVGH
Sbjct: 61  HSHQPDEAAVEQTFVNKDAVATLKLGQARGIAMLVPARAGLPVFEYAPNAVKKAVIGVGH 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYK 164
           G+K+QIHMMLK+LMP++ FKG DAADALAIA+CHA++      +
Sbjct: 121 GEKQQIHMMLKILMPKAEFKGNDAADALAIAICHAHNRGGDRMR 164


>gi|284044633|ref|YP_003394973.1| crossover junction endodeoxyribonuclease RuvC [Conexibacter woesei
           DSM 14684]
 gi|283948854|gb|ADB51598.1| crossover junction endodeoxyribonuclease RuvC [Conexibacter woesei
           DSM 14684]
          Length = 164

 Score =  203 bits (517), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 51/164 (31%), Positives = 84/164 (51%), Gaps = 1/164 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + ++GIDPG   TG+G+V      +  +  G I +   Q+L  RL  ++  L ++I   R
Sbjct: 1   MIVLGIDPGTANTGYGVVAQRRGRVVALDGGVIETPAGQALERRLATIHRRLCELIAEHR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P   AVE ++   +A +   +GQAR + +L+     +  S Y P  IK AV G G  +K 
Sbjct: 61  PVAVAVEDLYFGANARSAFAVGQARGVVLLAAGQHDLACSSYTPQQIKSAVCGSGRAEKL 120

Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
           Q+  M++ L+      +   AADALA+A+CH   A      +++
Sbjct: 121 QVQQMVQRLLSLTELPRPDHAADALAVAICHTNRAPLAAAMVSA 164


>gi|156933559|ref|YP_001437475.1| Holliday junction resolvase [Cronobacter sakazakii ATCC BAA-894]
 gi|166233191|sp|A7MEA1|RUVC_ENTS8 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|156531813|gb|ABU76639.1| hypothetical protein ESA_01379 [Cronobacter sakazakii ATCC BAA-894]
          Length = 173

 Score =  202 bits (516), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 54/135 (40%), Positives = 84/135 (62%), Gaps = 1/135 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I + V   L  RL  +Y G++++I  +RP+
Sbjct: 4   ILGIDPGSRVTGYGVIRQTGRQLTYLGSGCIRTSV-TDLPSRLKLIYAGVSEIITQFRPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR  AI++     +PV EYA   +K+ V+G+G  +K Q+
Sbjct: 63  YFAIEQVFMAKNADSALKLGQARGAAIVAAVNHDLPVFEYAARQVKQTVVGIGSAEKSQV 122

Query: 127 HMMLKMLMPESFFKG 141
             M++ L+  S    
Sbjct: 123 QHMVRTLLKLSANPQ 137


>gi|295688116|ref|YP_003591809.1| crossover junction endodeoxyribonuclease RuvC [Caulobacter segnis
           ATCC 21756]
 gi|295430019|gb|ADG09191.1| crossover junction endodeoxyribonuclease RuvC [Caulobacter segnis
           ATCC 21756]
          Length = 169

 Score =  202 bits (516), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 76/155 (49%), Positives = 105/155 (67%)

Query: 2   RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           R  IRI+G+DPGLRRTGWG++ + G  +  V+ G I    +   A RL  L+EG+  VI+
Sbjct: 6   RSPIRILGLDPGLRRTGWGVLTIDGARMSHVAHGVIAPDEKADFAQRLLHLFEGICAVIE 65

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
             RP+EAAVE+VF+N +A +TLKLG ARA A+++PA A +PV+EY+   +KKAV+G G  
Sbjct: 66  QHRPDEAAVEEVFLNTNAQSTLKLGHARAAALIAPARAGLPVAEYSTRLVKKAVVGTGAA 125

Query: 122 DKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
           DK QI  M+  L+P +     D ADALA+A+ HA 
Sbjct: 126 DKAQIGFMIARLLPTAGKTTADCADALAVAITHAN 160


>gi|300717085|ref|YP_003741888.1| Crossover junction endodeoxyribonuclease [Erwinia billingiae Eb661]
 gi|299062921|emb|CAX60041.1| Crossover junction endodeoxyribonuclease [Erwinia billingiae Eb661]
          Length = 174

 Score =  202 bits (516), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 54/135 (40%), Positives = 83/135 (61%), Gaps = 1/135 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I + V   L  RL  +Y G++++I  ++PE
Sbjct: 4   ILGIDPGSRITGYGVIRQVGRQLTYLGSGCIRTNV-VDLPSRLKLIYAGVSEIITQFQPE 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR  AI++     +PV EYA   +K+ V+G G  +K Q+
Sbjct: 63  FFAIEQVFMAKNADSALKLGQARGAAIVAAVNHDLPVFEYAARQVKQTVVGTGSAEKSQV 122

Query: 127 HMMLKMLMPESFFKG 141
             M++ L+  S    
Sbjct: 123 QHMVRTLLKLSANPQ 137


>gi|120434443|ref|YP_860149.1| Holliday junction resolvase [Gramella forsetii KT0803]
 gi|187611414|sp|A0LXG7|RUVC_GRAFK RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|117576593|emb|CAL65062.1| crossover junction endodeoxyribonuclease RuvC [Gramella forsetii
           KT0803]
          Length = 192

 Score =  202 bits (516), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 54/168 (32%), Positives = 88/168 (52%), Gaps = 3/168 (1%)

Query: 2   RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           +    I+GIDPG    G+G++ V    + F+    +     +    +L  ++E   ++I 
Sbjct: 11  KSERIILGIDPGTTIMGFGLIKVENKKMSFIQMNELQLSKYKDHYVKLKLIFERTIELID 70

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
           N+ P+E A+E  F  K+  + LKLG+A+ +A+ +     +P++EY P  IK A+ G G+ 
Sbjct: 71  NYHPDEIAIEAPFFGKNVQSMLKLGRAQGVAMAAGLSREVPITEYLPKKIKMAITGNGNA 130

Query: 122 DKKQIHMMLKMLMP-ESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
            K+Q+  ML+  +      K  DA D LA AVCH Y  NSG  +I   
Sbjct: 131 SKEQVARMLQSQLNIGKLPKNLDATDGLAAAVCHFY--NSGKTEIGKS 176


>gi|222086990|ref|YP_002545524.1| crossover junction endodeoxyribonuclease RuvC [Agrobacterium
           radiobacter K84]
 gi|254767453|sp|B9J9J2|RUVC_AGRRK RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|221724438|gb|ACM27594.1| crossover junction endodeoxyribonuclease RuvC [Agrobacterium
           radiobacter K84]
          Length = 170

 Score =  202 bits (516), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 109/167 (65%), Positives = 139/167 (83%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M+ +IRIIGIDPGLRRTGWG++D  G++L FV+SGT+ S     LA RLCQL++GL D++
Sbjct: 1   MQNTIRIIGIDPGLRRTGWGVIDTLGNSLRFVASGTVTSDGDMDLASRLCQLHDGLADIV 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             ++P+EAAVEQ FVNKDAVATLKLGQAR IA+L PA A +PV+EYAPN +KKAVIGVGH
Sbjct: 61  HGYKPDEAAVEQTFVNKDAVATLKLGQARGIAMLVPARAGLPVAEYAPNAVKKAVIGVGH 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
           G+K+QIHMMLK+LMP++ FKG DAADALAIA+CHA++  +   + A+
Sbjct: 121 GEKQQIHMMLKILMPKAEFKGNDAADALAIAICHAHNRGANRLRQAA 167


>gi|114704963|ref|ZP_01437871.1| Holliday junction resolvase [Fulvimarina pelagi HTCC2506]
 gi|114539748|gb|EAU42868.1| Holliday junction resolvase [Fulvimarina pelagi HTCC2506]
          Length = 172

 Score =  202 bits (516), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 109/163 (66%), Positives = 134/163 (82%)

Query: 4   SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
            IRIIGIDPGLRRTGWGIV+  G++L FVSSGT+ S  +  LA RL QL++GL+++I + 
Sbjct: 6   PIRIIGIDPGLRRTGWGIVETQGNSLRFVSSGTVTSDPKCDLASRLRQLHDGLSEIIHSH 65

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RP+EAAVEQ FVNKDAVATLKLGQAR IA+L P+LA IPV+EYAPN +KKAVIGVGHGDK
Sbjct: 66  RPDEAAVEQTFVNKDAVATLKLGQARGIALLVPSLAGIPVAEYAPNAVKKAVIGVGHGDK 125

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
           KQIHMM+ +LMP++ F   DAADA+AIA+CH +H  S   ++A
Sbjct: 126 KQIHMMVNVLMPKATFDTDDAADAIAIAICHTHHRQSAQSRLA 168


>gi|94501013|ref|ZP_01307537.1| Holliday junction resolvase [Oceanobacter sp. RED65]
 gi|94426760|gb|EAT11744.1| Holliday junction resolvase [Oceanobacter sp. RED65]
          Length = 176

 Score =  202 bits (516), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 55/135 (40%), Positives = 90/135 (66%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G+++  G  L ++ SG I     + LA+RL Q+++ ++++I+  +P 
Sbjct: 4   ILGIDPGSRLTGFGVIEAQGSRLRYIGSGCIRIDTSEDLAYRLKQIHDCVSELIETHQPN 63

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+EQVF+ K+A + LKLGQAR  AI++ A+  +PV EYA   +K+AV+G G  DK+Q+
Sbjct: 64  EFAIEQVFMGKNADSALKLGQARGSAIVAAAVNNLPVHEYAARAVKQAVVGKGSADKEQV 123

Query: 127 HMMLKMLMPESFFKG 141
             M+++L+       
Sbjct: 124 QHMVQLLLKLPGKPQ 138


>gi|237731900|ref|ZP_04562381.1| holliday junction resolvase [Citrobacter sp. 30_2]
 gi|283832739|ref|ZP_06352480.1| crossover junction endodeoxyribonuclease RuvC [Citrobacter youngae
           ATCC 29220]
 gi|226907439|gb|EEH93357.1| holliday junction resolvase [Citrobacter sp. 30_2]
 gi|291072422|gb|EFE10531.1| crossover junction endodeoxyribonuclease RuvC [Citrobacter youngae
           ATCC 29220]
          Length = 173

 Score =  202 bits (515), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 53/135 (39%), Positives = 84/135 (62%), Gaps = 1/135 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I + V   L  RL  +Y G+T++I  ++P+
Sbjct: 4   ILGIDPGSRITGYGVIRQVGRQLTYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR +AI++     +PV EYA   +K+ V+G+G  +K Q+
Sbjct: 63  YFAIEQVFMAKNADSALKLGQARGVAIVAATNQDLPVFEYAARQVKQTVVGIGSAEKSQV 122

Query: 127 HMMLKMLMPESFFKG 141
             M++ L+       
Sbjct: 123 QHMVRTLLKLPANPQ 137


>gi|296117348|ref|ZP_06835938.1| Holliday junction resolvase [Gluconacetobacter hansenii ATCC 23769]
 gi|295976114|gb|EFG82902.1| Holliday junction resolvase [Gluconacetobacter hansenii ATCC 23769]
          Length = 168

 Score =  202 bits (515), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 66/149 (44%), Positives = 102/149 (68%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGLR TGWG+++   + L  V+ G I +    S+  RL  L++ L ++ + + 
Sbjct: 2   VRILGIDPGLRFTGWGVIEARDNRLSHVADGVIATDAAMSVPLRLRHLHDALLELGRGFA 61

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+EAA+E+ +VN++  ATLKLG AR + +L P L  IPVSEY   ++K++V+G G   K+
Sbjct: 62  PDEAAIEETYVNRNGAATLKLGYARGVGLLVPVLLDIPVSEYGAKSVKRSVVGTGAATKE 121

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVC 153
           Q+ MM++ L+P +  K  DAADALA+A+C
Sbjct: 122 QVEMMVRRLLPTAIAKRSDAADALAVAIC 150


>gi|15639508|ref|NP_218958.1| Holliday junction nuclease (ruvC) [Treponema pallidum subsp.
           pallidum str. Nichols]
 gi|189025747|ref|YP_001933519.1| Holliday junction nuclease, subunit C [Treponema pallidum subsp.
           pallidum SS14]
 gi|6094207|sp|O83530|RUVC_TREPA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|238689326|sp|B2S3B1|RUVC_TREPS RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|3322809|gb|AAC65505.1| Holliday junction nuclease (ruvC) [Treponema pallidum subsp.
           pallidum str. Nichols]
 gi|189018322|gb|ACD70940.1| Holliday junction nuclease, subunit C [Treponema pallidum subsp.
           pallidum SS14]
 gi|291059894|gb|ADD72629.1| crossover junction endodeoxyribonuclease RuvC [Treponema pallidum
           subsp. pallidum str. Chicago]
          Length = 196

 Score =  202 bits (515), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 61/162 (37%), Positives = 97/162 (59%), Gaps = 1/162 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPGL  TG+G+++  G +L  ++ G IV+   Q  A RL  +++ L  VI  ++P+
Sbjct: 19  IVGIDPGLESTGYGVIEAGGGSLRCLTYGVIVTQSNQPSAARLRHIFDTLQQVISIYQPQ 78

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             AVE ++  K+  + L + QAR + +L+ A   I V+EYAPN IKKA+ G+   +K+Q+
Sbjct: 79  YCAVETIYFAKNVTSALCVAQARGVVLLAMAQQHISVAEYAPNAIKKAITGIAQAEKRQV 138

Query: 127 HMMLKMLMPESFFK-GKDAADALAIAVCHAYHANSGYYKIAS 167
             ++K+L+          AADALA+AV H +   S  Y + S
Sbjct: 139 QHLVKILLNLKDIPHPDHAADALAVAVTHVHCCMSSNYAVGS 180


>gi|153864403|ref|ZP_01997317.1| crossover junction endodeoxyribonuclease RuvC [Beggiatoa sp. SS]
 gi|152146103|gb|EDN72684.1| crossover junction endodeoxyribonuclease RuvC [Beggiatoa sp. SS]
          Length = 158

 Score =  202 bits (515), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 70/153 (45%), Positives = 103/153 (67%), Gaps = 1/153 (0%)

Query: 6   RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           RI+GIDPG R TG+GI+D       +V+SG I +  +  +  RL ++Y GL ++I+ ++P
Sbjct: 4   RILGIDPGSRITGFGIIDGLRQKSVYVTSGCIRTQSKL-MPQRLQEIYTGLNEIIEQYQP 62

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
             +A+EQVFV+++  + LKLGQAR +AIL+     + V EYAP  IK+AV+G GH DK Q
Sbjct: 63  TISAIEQVFVHRNVASALKLGQARGVAILACVQHNLTVHEYAPTQIKQAVVGNGHADKIQ 122

Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHA 158
           +  M+K+L+  S     DAAD LA A+CHA+H+
Sbjct: 123 VQQMVKILLSLSNTPQVDAADGLAAALCHAHHS 155


>gi|261340248|ref|ZP_05968106.1| crossover junction endodeoxyribonuclease RuvC [Enterobacter
           cancerogenus ATCC 35316]
 gi|288317333|gb|EFC56271.1| crossover junction endodeoxyribonuclease RuvC [Enterobacter
           cancerogenus ATCC 35316]
          Length = 173

 Score =  202 bits (515), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 52/135 (38%), Positives = 84/135 (62%), Gaps = 1/135 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I + V   L  RL  +Y G++++I  ++P+
Sbjct: 4   ILGIDPGSRITGYGVIRQVGRQLTYLGSGCIRTKVD-DLPSRLKLIYAGVSEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR +AI++     +PV EYA   +K+ V+G+G  +K Q+
Sbjct: 63  YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQDLPVFEYAARQVKQTVVGIGSAEKSQV 122

Query: 127 HMMLKMLMPESFFKG 141
             M++ L+       
Sbjct: 123 QHMVRTLLKLPANPQ 137


>gi|221134421|ref|ZP_03560726.1| crossover junction endodeoxyribonuclease RuvC [Glaciecola sp.
           HTCC2999]
          Length = 172

 Score =  202 bits (515), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 66/156 (42%), Positives = 102/156 (65%), Gaps = 1/156 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + I+GIDPG R TG+G+++  G+ L +++SG I       LA RL Q+++G++++I  ++
Sbjct: 1   MIILGIDPGSRITGYGVIEQKGNKLTYIASGCIRLT-GDELAGRLQQVFQGVSEIISQYQ 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+E A+EQVF+ K+  + LKLGQAR  AI++     +PVSEYA   IK++V+G G  DK 
Sbjct: 60  PKEFAIEQVFMAKNPDSALKLGQARGAAIVAATQFDLPVSEYAARQIKQSVVGKGSADKT 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           Q+  M+  L+        DAADALA+A+CH +   S
Sbjct: 120 QVQHMVSYLLKLPGTPQADAADALAVALCHGHTRQS 155


>gi|89889363|ref|ZP_01200874.1| crossover junction endodeoxyribonuclease ruvC [Flavobacteria
           bacterium BBFL7]
 gi|89517636|gb|EAS20292.1| crossover junction endodeoxyribonuclease ruvC [Flavobacteria
           bacterium BBFL7]
          Length = 184

 Score =  202 bits (515), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 56/169 (33%), Positives = 90/169 (53%), Gaps = 3/169 (1%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M     I+GIDPG    G+G++ V G+ + F+    +          +L +++E   ++I
Sbjct: 1   MATEKIILGIDPGTALMGFGVIKVVGNKMSFLQMNELDLRKYTDHYVKLRKIFERTIELI 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
               P+E A+E  F  K+  + LKLG+A+ +A+ +     IPV+EYAP  IK+++ G G 
Sbjct: 61  DTHHPDEIALEAPFFGKNVQSMLKLGRAQGVAMAAGLSRDIPVTEYAPRKIKQSITGKGT 120

Query: 121 GDKKQIHMMLKMLMP-ESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
             K+Q+  ML+ L+  +   K  D  D LA AVCH Y  NSG  ++   
Sbjct: 121 ASKEQVAKMLQNLLGFKEMPKNLDMTDGLAAAVCHFY--NSGRIEVGKS 167


>gi|239617282|ref|YP_002940604.1| crossover junction endodeoxyribonuclease RuvC [Kosmotoga olearia
           TBF 19.5.1]
 gi|239506113|gb|ACR79600.1| crossover junction endodeoxyribonuclease RuvC [Kosmotoga olearia
           TBF 19.5.1]
          Length = 168

 Score =  202 bits (514), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 47/143 (32%), Positives = 85/143 (59%), Gaps = 2/143 (1%)

Query: 1   MRKS-IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDV 59
           M KS  RI+GIDPG    G+G++DV+G  +  V  G I +   + +  RL ++Y+ L ++
Sbjct: 1   MAKSCTRILGIDPGFGTLGYGLIDVSGSKVSLVGYGVIQTKPGEPIPNRLLKIYDRLHEI 60

Query: 60  IKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVG 119
           ++ +RP+EAA+E++F  ++    +++G+AR + +L      IP+ EY P+ +K++V G G
Sbjct: 61  VEEYRPDEAAIEELFFFRNVTTAIQVGEARGVVLLVLKQLSIPIFEYTPHQVKQSVTGYG 120

Query: 120 HGDKKQIHMMLKMLMP-ESFFKG 141
             +K QI  ++K  +      K 
Sbjct: 121 RSEKGQIQRVMKKFLGMNETPKP 143


>gi|228472766|ref|ZP_04057524.1| crossover junction endodeoxyribonuclease RuvC [Capnocytophaga
           gingivalis ATCC 33624]
 gi|228275817|gb|EEK14583.1| crossover junction endodeoxyribonuclease RuvC [Capnocytophaga
           gingivalis ATCC 33624]
          Length = 181

 Score =  202 bits (514), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 49/154 (31%), Positives = 88/154 (57%), Gaps = 1/154 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+G+DPG    G+GI+ V  + + FV    ++         +L  ++E  T++I  ++P+
Sbjct: 5   ILGVDPGTTVMGFGIIQVMKNQMKFVQMNELILSKYDDHYLKLKLIFERTTELIDTYKPD 64

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E  F  K+  + LKLG+A+ +A+ +    ++P++EY P  +K A+ G G+  K+Q+
Sbjct: 65  ELAIEAPFFGKNVQSMLKLGRAQGVAMAAGLARQVPITEYEPKKVKMAITGNGNASKEQV 124

Query: 127 HMMLKMLMP-ESFFKGKDAADALAIAVCHAYHAN 159
             ML+ L+      +  DA D LA+AVCH ++  
Sbjct: 125 AKMLQQLLHFRELPEHLDATDGLAVAVCHFFNGG 158


>gi|88602181|ref|YP_502359.1| Holliday junction resolvase [Methanospirillum hungatei JF-1]
 gi|88187643|gb|ABD40640.1| crossover junction endodeoxyribonuclease RuvC [Methanospirillum
           hungatei JF-1]
          Length = 164

 Score =  202 bits (514), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 51/152 (33%), Positives = 84/152 (55%), Gaps = 2/152 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQ-SLAFRLCQLYEGLTDVIKNWRP 65
           ++GIDPG  R G+G+V    +       G I +  +      RL  +Y+ + ++I+ + P
Sbjct: 8   VLGIDPGFARCGYGVVGKEKNTPVAYEWGCIETTPKTGDTPVRLLSIYDSIENLIRTYAP 67

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
              A E++F +++    +++ +A+ + IL+ A  +IPV EY P  +K A+ G G  DKKQ
Sbjct: 68  ACLACEKLFFSRNTTTAMQVSEAKGVIILAAAKHQIPVFEYTPKQVKLAITGSGLADKKQ 127

Query: 126 IHMMLKMLMPESFFK-GKDAADALAIAVCHAY 156
           I MM+  L+  S      DAAD LA+A+CH  
Sbjct: 128 IQMMITRLLRLSEIPQPDDAADGLALALCHVN 159


>gi|149927723|ref|ZP_01915975.1| Crossover junction endodeoxyribonuclease RuvC [Limnobacter sp.
           MED105]
 gi|149823549|gb|EDM82779.1| Crossover junction endodeoxyribonuclease RuvC [Limnobacter sp.
           MED105]
          Length = 182

 Score =  202 bits (514), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 54/137 (39%), Positives = 84/137 (61%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGLR TG+G+VD+      +V+SG I S    SL  RL  L+ GL ++ + ++
Sbjct: 1   MRILGIDPGLRITGYGVVDIIESQQIYVASGVIRSNSDASLPDRLHTLFTGLCELAELYK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ A VE+VFVN +  +TL LGQAR   + +   + + V+EY    IK+A++G G  +K+
Sbjct: 61  PQVAVVEKVFVNVNPQSTLLLGQARGAVLTALTHSGLAVTEYTALQIKQAIVGHGKANKE 120

Query: 125 QIHMMLKMLMPESFFKG 141
           Q+  M+K L+       
Sbjct: 121 QVQEMVKRLLKLPAHPS 137


>gi|290769834|gb|ADD61607.1| putative protein [uncultured organism]
          Length = 189

 Score =  201 bits (513), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 47/160 (29%), Positives = 76/160 (47%), Gaps = 1/160 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           + GIDPG    GWG ++   +    +  G I +        RL  +Y+    ++   RP+
Sbjct: 24  VFGIDPGYAIVGWGAINFQSNTYKTLGYGAIETVAGTDFNKRLEYIYDETYAILNRCRPD 83

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+E+++   +    + + QAR + +L+    +IP+ EY P  +K AV G G   K Q+
Sbjct: 84  ALAIEKLYFQTNQKTAINVAQARGVTLLAAQKLKIPIFEYTPLQVKTAVTGYGKAKKPQV 143

Query: 127 HMMLKMLMPE-SFFKGKDAADALAIAVCHAYHANSGYYKI 165
             M   L+      K  D  DALAIA+CH   A S   ++
Sbjct: 144 MEMTARLLKLKEIPKPDDTCDALAIAICHTQAAGSQLRRV 183


>gi|257462966|ref|ZP_05627370.1| crossover junction endodeoxyribonuclease ruvC [Fusobacterium sp.
           D12]
          Length = 189

 Score =  201 bits (513), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 43/136 (31%), Positives = 73/136 (53%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPG    G+GI+D        V  G I +     +  RL +++E L+ +I+ +R
Sbjct: 1   MRVLGIDPGTAIVGYGIIDYEKGKFQIVDYGCIYTAKDLPMEDRLVKIHEELSALIEKYR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           PEE AVE++F  K+    + +GQAR + +L+  L  + +  Y P  +K  + G G  +KK
Sbjct: 61  PEEMAVEELFYFKNNKTVISVGQARGVIVLTGRLHGLQMHAYTPLQVKMGITGYGRAEKK 120

Query: 125 QIHMMLKMLMPESFFK 140
           QI  M++  +      
Sbjct: 121 QIQQMVQRFLGLKELP 136


>gi|147669065|ref|YP_001213883.1| crossover junction endodeoxyribonuclease RuvC [Dehalococcoides sp.
           BAV1]
 gi|189046064|sp|A5FS25|RUVC_DEHSB RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|146270013|gb|ABQ17005.1| crossover junction endodeoxyribonuclease RuvC [Dehalococcoides sp.
           BAV1]
          Length = 167

 Score =  201 bits (513), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 64/165 (38%), Positives = 102/165 (61%), Gaps = 3/165 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPG    G+GI++ A D L  V   ++       +  RL  +Y+GL +VI+ ++
Sbjct: 1   MRILGIDPGTLVVGYGIIETANDELTLVGFSSLTPPACAPIPQRLAYIYKGLVEVIELYQ 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+E AVE  F +K+  + L +G+A+A+A+L+ A   +PV+EY+P  IK  V G G+  K+
Sbjct: 61  PDEVAVESPFADKNIKSALAIGKAQAVALLAAANHSLPVTEYSPACIKSRVAGSGNASKE 120

Query: 125 QIHMMLKMLMPESFFK-GKDAADALAIAVCHAYHANSGYYKIASQ 168
           QI  M+++L+  +      DAADALA+A+CH  H+   +  I SQ
Sbjct: 121 QIQEMVRLLLNLAEIPQPNDAADALAVAICH--HSQRAFTNIISQ 163


>gi|226945720|ref|YP_002800793.1| Holliday junction resolvase [Azotobacter vinelandii DJ]
 gi|259495683|sp|C1DRG0|RUVC_AZOVD RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|226720647|gb|ACO79818.1| crossover junction endodeoxyribonuclease RuvC [Azotobacter
           vinelandii DJ]
          Length = 174

 Score =  201 bits (513), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 65/154 (42%), Positives = 99/154 (64%), Gaps = 1/154 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G+V   G    +++SG I +    SL  RL  +Y G+T++I++  P 
Sbjct: 4   ILGIDPGSRITGFGVVRDGGRGCEYIASGCIRTGSG-SLPERLQAVYRGVTEIIRSHGPV 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
              +EQVF+ ++A + LKLGQAR  AI++ A A + ++EY    +K+A++G G  DK+Q+
Sbjct: 63  TMGIEQVFMARNADSALKLGQARGAAIVAAAEAGLEIAEYTATQVKQAIVGSGGADKRQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
            MM+  L+        DA+DALAIA+CHA+H  S
Sbjct: 123 QMMVMHLLRLVQKPQIDASDALAIALCHAHHRQS 156


>gi|237736750|ref|ZP_04567231.1| crossover junction endodeoxyribonuclease ruvC [Fusobacterium
           mortiferum ATCC 9817]
 gi|229420612|gb|EEO35659.1| crossover junction endodeoxyribonuclease ruvC [Fusobacterium
           mortiferum ATCC 9817]
          Length = 192

 Score =  201 bits (513), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 41/136 (30%), Positives = 74/136 (54%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPG    G+ I+D   +    +  G I +     +  RLC++Y  LT++IK + 
Sbjct: 1   MRVLGIDPGTAIVGFSILDFENNRFNVIDYGCIYTDKDMPMEDRLCKIYSELTEIIKKYS 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P E A+E++F  K+    + +GQAR + +L      + ++ Y P  +K  + G G  +KK
Sbjct: 61  PSEMAIEELFYFKNNKTVISVGQARGVIVLCGRQNNLVINHYTPLQVKTGITGYGKAEKK 120

Query: 125 QIHMMLKMLMPESFFK 140
           QI +M++ ++  S   
Sbjct: 121 QIQLMVQRILGLSEIP 136


>gi|115526758|ref|YP_783669.1| Holliday junction resolvase [Rhodopseudomonas palustris BisA53]
 gi|122294483|sp|Q07H95|RUVC_RHOP5 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|115520705|gb|ABJ08689.1| Holliday junction endonuclease RuvC [Rhodopseudomonas palustris
           BisA53]
          Length = 174

 Score =  201 bits (513), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 85/157 (54%), Positives = 116/157 (73%)

Query: 2   RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           R+ +RI+GIDPGLRRTGWG+++  G+ L F+  G++       LA RL  ++ GL  V+ 
Sbjct: 7   RQPVRILGIDPGLRRTGWGVIESEGNRLVFIGCGSVEPPDTLPLAERLLAIHRGLAKVLA 66

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
           ++ P+EAAVEQ FVNKDA ATLKLGQAR +A+L+PA+  + V+EYAPN +KK V+G GH 
Sbjct: 67  DFAPDEAAVEQTFVNKDAGATLKLGQARGVAMLAPAMVGLSVAEYAPNLVKKTVVGAGHA 126

Query: 122 DKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHA 158
           DK QI MMLK+L+P++     DAADALA+A+ HA+H 
Sbjct: 127 DKNQIQMMLKILLPKAEPPSADAADALAVAITHAHHR 163


>gi|317060583|ref|ZP_07925068.1| crossover junction endodeoxyribonuclease ruvC [Fusobacterium sp.
           D12]
 gi|313686259|gb|EFS23094.1| crossover junction endodeoxyribonuclease ruvC [Fusobacterium sp.
           D12]
          Length = 191

 Score =  201 bits (513), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 43/136 (31%), Positives = 73/136 (53%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPG    G+GI+D        V  G I +     +  RL +++E L+ +I+ +R
Sbjct: 3   MRVLGIDPGTAIVGYGIIDYEKGKFQIVDYGCIYTAKDLPMEDRLVKIHEELSALIEKYR 62

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           PEE AVE++F  K+    + +GQAR + +L+  L  + +  Y P  +K  + G G  +KK
Sbjct: 63  PEEMAVEELFYFKNNKTVISVGQARGVIVLTGRLHGLQMHAYTPLQVKMGITGYGRAEKK 122

Query: 125 QIHMMLKMLMPESFFK 140
           QI  M++  +      
Sbjct: 123 QIQQMVQRFLGLKELP 138


>gi|295095543|emb|CBK84633.1| crossover junction endodeoxyribonuclease RuvC [Enterobacter cloacae
           subsp. cloacae NCTC 9394]
          Length = 173

 Score =  201 bits (513), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 52/135 (38%), Positives = 84/135 (62%), Gaps = 1/135 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I + V   L  RL  +Y G++++I  ++P+
Sbjct: 4   ILGIDPGSRVTGYGVIRQVGRQLTYLGSGCIRTKVD-DLPSRLKLIYAGVSEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR +AI++     +PV EYA   +K+ V+G+G  +K Q+
Sbjct: 63  YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQDLPVFEYAARQVKQTVVGIGSAEKSQV 122

Query: 127 HMMLKMLMPESFFKG 141
             M++ L+       
Sbjct: 123 QHMVRTLLKLPANPQ 137


>gi|73748285|ref|YP_307524.1| crossover junction endodeoxyribonuclease RuvC [Dehalococcoides sp.
           CBDB1]
 gi|110287672|sp|Q3ZZK5|RUVC_DEHSC RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|73660001|emb|CAI82608.1| crossover junction endodeoxyribonuclease RuvC [Dehalococcoides sp.
           CBDB1]
          Length = 167

 Score =  201 bits (513), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 64/165 (38%), Positives = 102/165 (61%), Gaps = 3/165 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPG    G+GI++ A D L  V   ++       +  RL  +Y+GL +VI+ ++
Sbjct: 1   MRILGIDPGTLVVGYGIIEAANDELTLVGFSSLTPPACAPIPQRLAYIYKGLVEVIELYQ 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+E AVE  F +K+  + L +G+A+A+A+L+ A   +PV+EY+P  IK  V G G+  K+
Sbjct: 61  PDEVAVESPFADKNIKSALAIGKAQAVALLAAANHSLPVTEYSPACIKSRVAGSGNASKE 120

Query: 125 QIHMMLKMLMPESFFK-GKDAADALAIAVCHAYHANSGYYKIASQ 168
           QI  M+++L+  +      DAADALA+A+CH  H+   +  I SQ
Sbjct: 121 QIQEMVRLLLNLAEIPQPNDAADALAVAICH--HSQRAFTNIISQ 163


>gi|224583597|ref|YP_002637395.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|254767484|sp|C0Q2F1|RUVC_SALPC RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|224468124|gb|ACN45954.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|322714951|gb|EFZ06522.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
          Length = 173

 Score =  201 bits (512), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 53/135 (39%), Positives = 84/135 (62%), Gaps = 1/135 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I + V   L  RL  +Y G+T++I  ++P+
Sbjct: 4   ILGIDPGSRITGYGVIRQVGRQLTYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR +AI++     +PV EYA   +K+ V+G+G  +K Q+
Sbjct: 63  YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 122

Query: 127 HMMLKMLMPESFFKG 141
             M++ L+       
Sbjct: 123 QHMVRTLLKLPANPQ 137


>gi|146312077|ref|YP_001177151.1| Holliday junction resolvase [Enterobacter sp. 638]
 gi|167012680|sp|A4WBM0|RUVC_ENT38 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|145318953|gb|ABP61100.1| Holliday junction endonuclease RuvC [Enterobacter sp. 638]
          Length = 173

 Score =  201 bits (512), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 52/135 (38%), Positives = 82/135 (60%), Gaps = 1/135 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I + V   L  RL  +Y G++++I  ++P+
Sbjct: 4   ILGIDPGSRITGYGVIRQVGRQLTYLGSGCIRTKVD-DLPSRLKLIYAGVSEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR +AI++     +PV EYA   +K+ V+G G   K Q+
Sbjct: 63  FFAIEQVFMAKNADSALKLGQARGVAIVAAVNQDLPVFEYAARQVKQTVVGTGGAAKSQV 122

Query: 127 HMMLKMLMPESFFKG 141
             M++ L+       
Sbjct: 123 QHMVRTLLKLQANPQ 137


>gi|225181940|ref|ZP_03735374.1| crossover junction endodeoxyribonuclease RuvC [Dethiobacter
           alkaliphilus AHT 1]
 gi|225167380|gb|EEG76197.1| crossover junction endodeoxyribonuclease RuvC [Dethiobacter
           alkaliphilus AHT 1]
          Length = 168

 Score =  201 bits (512), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 47/138 (34%), Positives = 82/138 (59%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RIIGIDPG+  TG+GIV+  G     +  G +++        RL  +Y  L+ V+  + 
Sbjct: 1   MRIIGIDPGIATTGYGIVESDGHRSVAIEYGCVITDKDLPGPQRLQCIYRELSAVVSRFE 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  AVE++F NK+  + +++G+AR +AIL+   A + + EY P  +K++V+G G  +KK
Sbjct: 61  PQVMAVEKLFFNKNINSAMQVGEARGVAILTGMHAGLDIFEYTPLQVKQSVVGFGRAEKK 120

Query: 125 QIHMMLKMLMPESFFKGK 142
           Q+  M+K+L+  +     
Sbjct: 121 QVQQMVKVLLNLTKIPRP 138


>gi|188533630|ref|YP_001907427.1| Holliday junction resolvase [Erwinia tasmaniensis Et1/99]
 gi|238691996|sp|B2VJ93|RUVC_ERWT9 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|188028672|emb|CAO96534.1| Crossover junction endodeoxyribonuclease [Erwinia tasmaniensis
           Et1/99]
          Length = 173

 Score =  201 bits (512), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 53/135 (39%), Positives = 83/135 (61%), Gaps = 1/135 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I + V   L  RL  +Y G++++I  ++PE
Sbjct: 4   ILGIDPGSRITGYGVIRQTGRQLTYLGSGCIRTSV-TDLPSRLKLIYAGVSEIITQFQPE 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR  AI++     +PV EYA   +K+ V+G+G  +K Q+
Sbjct: 63  YFAIEQVFMAKNADSALKLGQARGAAIVAAVNQDLPVFEYAARQVKQTVVGIGSAEKSQV 122

Query: 127 HMMLKMLMPESFFKG 141
             M++ L+       
Sbjct: 123 QHMVRTLLKLPANPQ 137


>gi|238756968|ref|ZP_04618156.1| Crossover junction endodeoxyribonuclease ruvC [Yersinia aldovae
           ATCC 35236]
 gi|238704798|gb|EEP97327.1| Crossover junction endodeoxyribonuclease ruvC [Yersinia aldovae
           ATCC 35236]
          Length = 198

 Score =  201 bits (512), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 52/135 (38%), Positives = 82/135 (60%), Gaps = 1/135 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I + V   +  RL  +Y G+T++I  ++P+
Sbjct: 29  ILGIDPGSRVTGYGVIRQQGRQLIYLGSGCIRTVVD-DMPTRLKLIYAGVTEIITQFQPD 87

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+  + LKLGQAR  AI++     +PVSEYA   +K+ V+G G  +K Q+
Sbjct: 88  FFAIEQVFMAKNPDSALKLGQARGAAIVAAVNLNLPVSEYAARQVKQTVVGTGAAEKSQV 147

Query: 127 HMMLKMLMPESFFKG 141
             M++ L+       
Sbjct: 148 QHMVRSLLKLPANPQ 162


>gi|103485831|ref|YP_615392.1| crossover junction endodeoxyribonuclease RuvC [Sphingopyxis
           alaskensis RB2256]
 gi|123253592|sp|Q1GWB3|RUVC_SPHAL RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|98975908|gb|ABF52059.1| crossover junction endodeoxyribonuclease RuvC [Sphingopyxis
           alaskensis RB2256]
          Length = 156

 Score =  201 bits (512), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 65/155 (41%), Positives = 96/155 (61%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + I+G+DP L  TGWG++ V G  +  +++G I +  + +L  RL  L   L  VI +  
Sbjct: 1   MIILGLDPSLSCTGWGLIRVEGSRISHIANGQIKTDAKAALPDRLVHLDTALAAVIADHA 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ AAVE+VFVN +  +TLKL  AR + +L  A   + V++YAP  +KKA++G G   K 
Sbjct: 61  PKCAAVEEVFVNDNPQSTLKLAHARGVVLLGCARGGLTVTQYAPRLVKKAIVGTGGAAKG 120

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHAN 159
           Q+  ML +L+P +   G DAADALA+A+CHA H  
Sbjct: 121 QVQAMLGVLLPGTKVAGPDAADALAVAICHANHRR 155


>gi|212711937|ref|ZP_03320065.1| hypothetical protein PROVALCAL_03012 [Providencia alcalifaciens DSM
           30120]
 gi|212685459|gb|EEB44987.1| hypothetical protein PROVALCAL_03012 [Providencia alcalifaciens DSM
           30120]
          Length = 173

 Score =  201 bits (512), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 54/135 (40%), Positives = 86/135 (63%), Gaps = 1/135 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I + V   L  RL ++Y G++++I  ++P+
Sbjct: 4   ILGIDPGSRITGYGVIRQQGRQLLYLGSGCIRTQVD-DLPSRLQRIYAGVSEIITQYQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             ++EQVF+ K+A + LKLGQAR +AI++ A   IPV EYA   +K+ V+G G  +K Q+
Sbjct: 63  VLSIEQVFMAKNADSALKLGQARGVAIVAAANQNIPVFEYAARQVKQTVVGTGSAEKSQV 122

Query: 127 HMMLKMLMPESFFKG 141
             M+K ++  S    
Sbjct: 123 QHMVKSILKLSASPQ 137


>gi|16760848|ref|NP_456465.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|16765240|ref|NP_460855.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|29141460|ref|NP_804802.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|56413183|ref|YP_150258.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|167994199|ref|ZP_02575291.1| crossover junction endodeoxyribonuclease RuvC [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168234040|ref|ZP_02659098.1| crossover junction endodeoxyribonuclease RuvC [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|168238528|ref|ZP_02663586.1| crossover junction endodeoxyribonuclease RuvC [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|168241527|ref|ZP_02666459.1| crossover junction endodeoxyribonuclease RuvC [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|168462570|ref|ZP_02696501.1| crossover junction endodeoxyribonuclease RuvC [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|168820722|ref|ZP_02832722.1| crossover junction endodeoxyribonuclease RuvC [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|194444872|ref|YP_002041163.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194448512|ref|YP_002045951.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194471832|ref|ZP_03077816.1| crossover junction endodeoxyribonuclease RuvC [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|194736889|ref|YP_002114933.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197249729|ref|YP_002146124.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197264932|ref|ZP_03165006.1| crossover junction endodeoxyribonuclease RuvC [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|197362109|ref|YP_002141746.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|204931047|ref|ZP_03221873.1| crossover junction endodeoxyribonuclease RuvC [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|205352396|ref|YP_002226197.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|207856581|ref|YP_002243232.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|213162202|ref|ZP_03347912.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213426401|ref|ZP_03359151.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213649296|ref|ZP_03379349.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
 gi|238912042|ref|ZP_04655879.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
 gi|289808364|ref|ZP_06538993.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
 gi|289824026|ref|ZP_06543624.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
 gi|54039582|sp|P66763|RUVC_SALTI RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|54042209|sp|P66762|RUVC_SALTY RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|81599838|sp|Q5PN00|RUVC_SALPA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|226698763|sp|B5F3J2|RUVC_SALA4 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|226698765|sp|B5R1V5|RUVC_SALEP RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|226698766|sp|B5R8D9|RUVC_SALG2 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|238689769|sp|B4TYS1|RUVC_SALSV RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|238690745|sp|B5BH57|RUVC_SALPK RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|238693527|sp|B4SVE8|RUVC_SALNS RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|238693637|sp|B4T7Z6|RUVC_SALHS RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|25321119|pir||AF0743 crossover junction endodeoxyribonuclease [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16420434|gb|AAL20814.1| Holliday junction nuclease [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|16503145|emb|CAD05649.1| crossover junction endodeoxyribonuclease [Salmonella enterica
           subsp. enterica serovar Typhi]
 gi|29137087|gb|AAO68651.1| crossover junction endodeoxyribonuclease [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
 gi|56127440|gb|AAV76946.1| crossover junction endodeoxyribonuclease [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|194403535|gb|ACF63757.1| crossover junction endodeoxyribonuclease RuvC [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194406816|gb|ACF67035.1| crossover junction endodeoxyribonuclease RuvC [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|194458196|gb|EDX47035.1| crossover junction endodeoxyribonuclease RuvC [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|194712391|gb|ACF91612.1| crossover junction endodeoxyribonuclease RuvC [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|195634247|gb|EDX52599.1| crossover junction endodeoxyribonuclease RuvC [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|197093586|emb|CAR59049.1| crossover junction endodeoxyribonuclease [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|197213432|gb|ACH50829.1| crossover junction endodeoxyribonuclease RuvC [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197243187|gb|EDY25807.1| crossover junction endodeoxyribonuclease RuvC [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|197288682|gb|EDY28057.1| crossover junction endodeoxyribonuclease RuvC [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|204320091|gb|EDZ05296.1| crossover junction endodeoxyribonuclease RuvC [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|205272177|emb|CAR37035.1| crossover junction endodeoxyribonuclease [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|205327886|gb|EDZ14650.1| crossover junction endodeoxyribonuclease RuvC [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205331988|gb|EDZ18752.1| crossover junction endodeoxyribonuclease RuvC [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|205339451|gb|EDZ26215.1| crossover junction endodeoxyribonuclease RuvC [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|205342603|gb|EDZ29367.1| crossover junction endodeoxyribonuclease RuvC [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|206708384|emb|CAR32688.1| crossover junction endodeoxyribonuclease [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|261247068|emb|CBG24889.1| Crossover junction endodeoxyribonuclease ruvC [Salmonella enterica
           subsp. enterica serovar Typhimurium str. D23580]
 gi|267993881|gb|ACY88766.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301158418|emb|CBW17927.1| Crossover junction endodeoxyribonuclease ruvC [Salmonella enterica
           subsp. enterica serovar Typhimurium str. SL1344]
 gi|312912892|dbj|BAJ36866.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|320085484|emb|CBY95265.1| crossover junction endodeoxyribonuclease [Salmonella enterica
           subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|321224542|gb|EFX49605.1| Crossover junction endodeoxyribonuclease RuvC [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|322616898|gb|EFY13806.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322618136|gb|EFY15028.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322625807|gb|EFY22626.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322626259|gb|EFY23069.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322632673|gb|EFY29418.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322639017|gb|EFY35710.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322640457|gb|EFY37110.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322644222|gb|EFY40767.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322649544|gb|EFY45976.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322655452|gb|EFY51760.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322660231|gb|EFY56469.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322662912|gb|EFY59119.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322668097|gb|EFY64256.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322674143|gb|EFY70237.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322675503|gb|EFY71577.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322683083|gb|EFY79099.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322686777|gb|EFY82755.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323130182|gb|ADX17612.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|323195332|gb|EFZ80512.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323199224|gb|EFZ84319.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323204051|gb|EFZ89066.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323207480|gb|EFZ92428.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323210665|gb|EFZ95543.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323217464|gb|EGA02183.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323221955|gb|EGA06345.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323224435|gb|EGA08723.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323231486|gb|EGA15599.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323235928|gb|EGA20007.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323240498|gb|EGA24541.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323245390|gb|EGA29390.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323247810|gb|EGA31748.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323253609|gb|EGA37437.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323255038|gb|EGA38826.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323260271|gb|EGA43892.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323266862|gb|EGA50348.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323269068|gb|EGA52524.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
 gi|326627448|gb|EGE33791.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
 gi|332988791|gb|AEF07774.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 173

 Score =  201 bits (512), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 53/135 (39%), Positives = 84/135 (62%), Gaps = 1/135 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I + V   L  RL  +Y G+T++I  ++P+
Sbjct: 4   ILGIDPGSRITGYGVIRQVGRQLTYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR +AI++     +PV EYA   +K+ V+G+G  +K Q+
Sbjct: 63  YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 122

Query: 127 HMMLKMLMPESFFKG 141
             M++ L+       
Sbjct: 123 QHMVRTLLKLPANPQ 137


>gi|183598999|ref|ZP_02960492.1| hypothetical protein PROSTU_02443 [Providencia stuartii ATCC 25827]
 gi|188021214|gb|EDU59254.1| hypothetical protein PROSTU_02443 [Providencia stuartii ATCC 25827]
          Length = 173

 Score =  201 bits (512), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 54/136 (39%), Positives = 85/136 (62%), Gaps = 1/136 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I + V   L  RL ++Y G++++I  ++P+
Sbjct: 4   ILGIDPGSRVTGYGVIRQQGRQLFYLGSGCIRTQVD-DLPSRLQRIYAGVSEIITQYQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR +AI++     IPV EYA   +K+ V+G G  +K Q+
Sbjct: 63  VLAIEQVFMAKNADSALKLGQARGVAIVAGVNQNIPVFEYAARQVKQTVVGTGAAEKSQV 122

Query: 127 HMMLKMLMPESFFKGK 142
             M+K ++  S     
Sbjct: 123 QHMVKSILKLSANPQS 138


>gi|157145358|ref|YP_001452677.1| Holliday junction resolvase [Citrobacter koseri ATCC BAA-895]
 gi|166233188|sp|A8AFH8|RUVC_CITK8 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|157082563|gb|ABV12241.1| hypothetical protein CKO_01098 [Citrobacter koseri ATCC BAA-895]
          Length = 173

 Score =  201 bits (512), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 53/135 (39%), Positives = 84/135 (62%), Gaps = 1/135 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I + V   L  RL  +Y G+T++I  ++P+
Sbjct: 4   ILGIDPGSRVTGYGVIRQVGRQLTYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR +AI++     +PV EYA   +K+ V+G+G  +K Q+
Sbjct: 63  YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQDLPVFEYAARQVKQTVVGIGSAEKSQV 122

Query: 127 HMMLKMLMPESFFKG 141
             M++ L+       
Sbjct: 123 QHMVRTLLKLPANPQ 137


>gi|323345431|ref|ZP_08085654.1| crossover junction endoribonuclease subunit C [Prevotella oralis
           ATCC 33269]
 gi|323093545|gb|EFZ36123.1| crossover junction endoribonuclease subunit C [Prevotella oralis
           ATCC 33269]
          Length = 194

 Score =  201 bits (512), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 54/156 (34%), Positives = 81/156 (51%), Gaps = 3/156 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG    G+G++ V G     V+ G I          RL ++++ +T +I  + P+
Sbjct: 15  ILGIDPGTNVMGYGVIRVYGRTAQMVAMGVIDMRRELDPYIRLGKIFDRVTGIIDEYLPD 74

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E  F  K+  + LKLG+A+ +AI +     +P+ EYAP  IK A+ G G   K+Q+
Sbjct: 75  EMAIEAPFFGKNVQSMLKLGRAQGVAIAAAIHHDVPIHEYAPLKIKMAITGQGQASKEQV 134

Query: 127 HMMLKMLM---PESFFKGKDAADALAIAVCHAYHAN 159
             ML+ L+        K  DA DAL  A CH     
Sbjct: 135 AGMLQRLLRINGNDMPKFMDATDALGAAYCHFMQMG 170


>gi|317503186|ref|ZP_07961247.1| crossover junction endoribonuclease subunit C [Prevotella salivae
           DSM 15606]
 gi|315665689|gb|EFV05295.1| crossover junction endoribonuclease subunit C [Prevotella salivae
           DSM 15606]
          Length = 203

 Score =  201 bits (512), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 54/156 (34%), Positives = 83/156 (53%), Gaps = 3/156 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG    G+G++ V G+     + G I          RL  ++E +T +I+++ P+
Sbjct: 10  ILGIDPGTNLMGYGVLRVQGNRAKMEAMGVIDLRKMPDPYLRLGHIFERVTGIIESYLPD 69

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E  F  K+  + LKLG+A+ +AI +     IP+ EYAP  IK A+ G G   K+Q+
Sbjct: 70  ELAIEAPFFGKNVQSMLKLGRAQGVAIAAAIHRDIPIHEYAPLKIKMAITGQGQSSKEQV 129

Query: 127 HMMLKMLMPE---SFFKGKDAADALAIAVCHAYHAN 159
             ML+ ++        +  DA DALA A CH     
Sbjct: 130 AGMLQRVLNLKKEEMPRFMDATDALAAAYCHFLQMG 165


>gi|281425236|ref|ZP_06256149.1| crossover junction endodeoxyribonuclease RuvC [Prevotella oris
           F0302]
 gi|281400702|gb|EFB31533.1| crossover junction endodeoxyribonuclease RuvC [Prevotella oris
           F0302]
          Length = 205

 Score =  201 bits (512), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 3/156 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG    G+G++ V G+     + G I          RL  ++E +T +I+++ P+
Sbjct: 10  ILGIDPGTNVMGYGVLRVNGNKAKMEAMGVIDLRKMHDPYLRLGHIFERVTGIIESYLPD 69

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E  F  K+  + LKLG+A+ +AI +     +P+ EYAP  IK A+ G G   K+Q+
Sbjct: 70  ELAIEAPFFGKNVQSMLKLGRAQGVAIAAAIRRDVPIHEYAPLKIKMAITGQGQASKEQV 129

Query: 127 HMMLKMLMPESF---FKGKDAADALAIAVCHAYHAN 159
             ML+ ++        +  DA DALA A CH     
Sbjct: 130 AGMLQRVLHLEEEDMPRFMDATDALAAAYCHFLQMG 165


>gi|89094835|ref|ZP_01167768.1| Holliday junction resolvase [Oceanospirillum sp. MED92]
 gi|89080890|gb|EAR60129.1| Holliday junction resolvase [Oceanospirillum sp. MED92]
          Length = 172

 Score =  200 bits (511), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 68/156 (43%), Positives = 103/156 (66%), Gaps = 1/156 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + I+GIDPG R TG+G+++  G+   +V+SG I       L  RL Q+Y G+++VI+ + 
Sbjct: 1   MLILGIDPGSRITGYGVINCVGNKNEYVASGCIR-IKGDELPERLQQVYAGVSEVIERYC 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+E A+EQVF+ ++A + LKLGQAR +AI++   A +PV EYA   +K++V+G G  DK 
Sbjct: 60  PQEFAIEQVFMARNADSALKLGQARGVAIVAGTNAELPVYEYAARKVKQSVVGKGSADKA 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           Q+  M+  ++        DAADALAIA+CHA+  NS
Sbjct: 120 QVQHMVAHILKLPGLPQADAADALAIALCHAHTRNS 155


>gi|221236281|ref|YP_002518718.1| Holliday junction resolvase [Caulobacter crescentus NA1000]
 gi|220965454|gb|ACL96810.1| crossover junction endodeoxyribonuclease ruvC [Caulobacter
           crescentus NA1000]
          Length = 173

 Score =  200 bits (511), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 76/164 (46%), Positives = 107/164 (65%), Gaps = 8/164 (4%)

Query: 1   MRKSI--------RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQL 52
           MR+ +        RI+G+DPGLRRTGWG++ V G  +  ++ G I    +   A RL  L
Sbjct: 1   MREHMMNANRLPTRILGLDPGLRRTGWGVLAVEGSRMTHIAHGVITPDEKAEFADRLLHL 60

Query: 53  YEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIK 112
           +EG+T VI+  RP+EAAVE+VF+N +A +TLKLG ARA A+++PA A + V+EY+   +K
Sbjct: 61  FEGITAVIEQHRPDEAAVEEVFLNTNAQSTLKLGHARAAALIAPARAGLLVAEYSTRLVK 120

Query: 113 KAVIGVGHGDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
           KAV+G G  DK QI  M+  L+P +     D ADALA+A+ HA 
Sbjct: 121 KAVVGTGAADKAQIGFMIARLLPTAGKTTADCADALAVAITHAN 164


>gi|150020930|ref|YP_001306284.1| Holliday junction resolvase [Thermosipho melanesiensis BI429]
 gi|166233307|sp|A6LLU8|RUVC_THEM4 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|149793451|gb|ABR30899.1| crossover junction endodeoxyribonuclease RuvC [Thermosipho
           melanesiensis BI429]
          Length = 157

 Score =  200 bits (511), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 42/138 (30%), Positives = 79/138 (57%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++IIGIDPG    G+G+++ +G+ +  ++ G I +    S+  RL  +YE    ++K + 
Sbjct: 1   MKIIGIDPGYGILGYGVLEKSGNKISHITHGVITTDKELSMYKRLQVIYEEFLRLLKEYS 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  A+E +F  K+    +++G+AR + +L+ +   +P+ E+ P  +K  + G GH DKK
Sbjct: 61  PDACAIESLFFYKNVKTAIRVGEARGVILLATSQMDLPLYEFTPYQVKNNITGYGHSDKK 120

Query: 125 QIHMMLKMLMPESFFKGK 142
           Q+  M+KML+        
Sbjct: 121 QVQKMVKMLLNLDKIPRP 138


>gi|260060745|ref|YP_003193825.1| Holliday junction resolvase [Robiginitalea biformata HTCC2501]
 gi|88784875|gb|EAR16044.1| Holliday junction resolvase [Robiginitalea biformata HTCC2501]
          Length = 188

 Score =  200 bits (511), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 52/154 (33%), Positives = 87/154 (56%), Gaps = 1/154 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG    G+GI+ V G  + FV    ++         +L  +++   ++I  + P+
Sbjct: 11  ILGIDPGTTIMGFGIIRVQGKQMEFVQMNELILRKYDDPFTKLKLIFDRTLELIDTYHPD 70

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E  F  K+  + LKLG+A+ +A+ +    ++P++EY P  IK A+ G G+  K+Q+
Sbjct: 71  EIAIEAPFYGKNVQSMLKLGRAQGVAMAAGLSRQVPITEYLPKKIKMAITGNGNASKEQV 130

Query: 127 HMMLKMLM-PESFFKGKDAADALAIAVCHAYHAN 159
             ML+ L+  +S  K  D+ D LA AVCH Y+  
Sbjct: 131 ARMLQSLLELKSLPKNLDSTDGLAAAVCHFYNQG 164


>gi|310658622|ref|YP_003936343.1| RuvABC resolvasome endonuclease subunit [Clostridium sticklandii
           DSM 519]
 gi|308825400|emb|CBH21438.1| component of RuvABC resolvasome, endonuclease [Clostridium
           sticklandii]
          Length = 163

 Score =  200 bits (511), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 41/136 (30%), Positives = 73/136 (53%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + ++GIDPG+   G+GI++  G+    +  G I +    S   RL  ++ GL  +I ++ 
Sbjct: 1   MIVLGIDPGIAIVGYGIIEYIGNKFKVLDYGVIRTKSDLSYPERLELIFNGLNQIISSYN 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
            +E AVE++F  K+    + +  AR + +L   L + P+ EY P  +K+ V G G  DK+
Sbjct: 61  IDEIAVEELFFCKNVKTAIDVAHARGVIVLCGQLNKKPIYEYTPLQVKQGVSGYGKADKR 120

Query: 125 QIHMMLKMLMPESFFK 140
           Q+  M+K+L+      
Sbjct: 121 QVQEMVKLLLNLKTIP 136


>gi|293395807|ref|ZP_06640089.1| crossover junction endoribonuclease subunit C [Serratia odorifera
           DSM 4582]
 gi|291421744|gb|EFE94991.1| crossover junction endoribonuclease subunit C [Serratia odorifera
           DSM 4582]
          Length = 173

 Score =  200 bits (511), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 50/135 (37%), Positives = 83/135 (61%), Gaps = 1/135 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L +++SG I + V   +  RL  +Y G++++I  ++P+
Sbjct: 4   ILGIDPGSRITGYGLIRQQGRQLSYIASGCIRTVVD-DMPTRLKLIYAGVSEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+  + LKLGQAR +AI++     + V EYA   +K+ V+G G  +K Q+
Sbjct: 63  FFAIEQVFMAKNPDSALKLGQARGVAIVAAVNQNLEVFEYAARQVKQTVVGTGAAEKSQV 122

Query: 127 HMMLKMLMPESFFKG 141
             M++ L+  S    
Sbjct: 123 QHMVRSLLKLSANPQ 137


>gi|299142645|ref|ZP_07035775.1| crossover junction endodeoxyribonuclease RuvC [Prevotella oris
           C735]
 gi|298575860|gb|EFI47736.1| crossover junction endodeoxyribonuclease RuvC [Prevotella oris
           C735]
          Length = 205

 Score =  200 bits (511), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 3/156 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG    G+G++ V G+     + G I          RL  ++E +T +I+++ P+
Sbjct: 10  ILGIDPGTNVMGYGVLRVNGNKAKMEAMGVIDLRKMHDPYLRLGHIFERVTGIIESYLPD 69

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E  F  K+  + LKLG+A+ +AI +     +P+ EYAP  IK A+ G G   K+Q+
Sbjct: 70  ELAIEAPFFGKNVQSMLKLGRAQGVAIAAAIRRDVPIHEYAPLKIKMAITGQGQASKEQV 129

Query: 127 HMMLKMLMPESF---FKGKDAADALAIAVCHAYHAN 159
             ML+ ++        +  DA DALA A CH     
Sbjct: 130 AGMLQRVLHLEEEDMPRFMDATDALAAAYCHFLQMG 165


>gi|296101798|ref|YP_003611944.1| Holliday junction resolvase [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295056257|gb|ADF60995.1| Holliday junction resolvase [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 173

 Score =  200 bits (511), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 53/135 (39%), Positives = 85/135 (62%), Gaps = 1/135 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I + V + L  RL  +Y G+T++I  ++P+
Sbjct: 4   ILGIDPGSRVTGYGVIRQVGRQLTYLGSGCIRTKV-EDLPSRLKLIYAGVTEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR +AI++     +PV EYA   +K+ V+G+G  +K Q+
Sbjct: 63  YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQDLPVFEYAARQVKQTVVGIGSAEKSQV 122

Query: 127 HMMLKMLMPESFFKG 141
             M++ L+       
Sbjct: 123 QHMVRTLLKLPANPQ 137


>gi|16127468|ref|NP_422032.1| Holliday junction resolvase [Caulobacter crescentus CB15]
 gi|20978751|sp|Q9A3G6|RUVC_CAUCR RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|13424922|gb|AAK25200.1| Holliday junction resolvase [Caulobacter crescentus CB15]
          Length = 169

 Score =  200 bits (511), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 75/155 (48%), Positives = 104/155 (67%)

Query: 2   RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           R   RI+G+DPGLRRTGWG++ V G  +  ++ G I    +   A RL  L+EG+T VI+
Sbjct: 6   RLPTRILGLDPGLRRTGWGVLAVEGSRMTHIAHGVITPDEKAEFADRLLHLFEGITAVIE 65

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
             RP+EAAVE+VF+N +A +TLKLG ARA A+++PA A + V+EY+   +KKAV+G G  
Sbjct: 66  QHRPDEAAVEEVFLNTNAQSTLKLGHARAAALIAPARAGLLVAEYSTRLVKKAVVGTGAA 125

Query: 122 DKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
           DK QI  M+  L+P +     D ADALA+A+ HA 
Sbjct: 126 DKAQIGFMIARLLPTAGKTTADCADALAVAITHAN 160


>gi|161502988|ref|YP_001570100.1| Holliday junction resolvase [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|189046077|sp|A9MND5|RUVC_SALAR RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|160864335|gb|ABX20958.1| hypothetical protein SARI_01050 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 173

 Score =  200 bits (511), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 53/135 (39%), Positives = 84/135 (62%), Gaps = 1/135 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I + V   L  RL  +Y G+T++I  ++P+
Sbjct: 4   ILGIDPGSRITGYGVIRQVGRQLTYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR +AI++     +PV EYA   +K+ V+G+G  +K Q+
Sbjct: 63  YFAIEQVFMAKNADSALKLGQARGVAIVAAVNRELPVFEYAARQVKQTVVGIGSAEKSQV 122

Query: 127 HMMLKMLMPESFFKG 141
             M++ L+       
Sbjct: 123 QHMVRTLLKLPANPQ 137


>gi|292488539|ref|YP_003531423.1| Holliday junction nuclease [Erwinia amylovora CFBP1430]
 gi|292899715|ref|YP_003539084.1| crossover junction endodeoxyribonuclease [Erwinia amylovora ATCC
           49946]
 gi|291199563|emb|CBJ46680.1| crossover junction endodeoxyribonuclease [Erwinia amylovora ATCC
           49946]
 gi|291553970|emb|CBA21015.1| Holliday junction nuclease [Erwinia amylovora CFBP1430]
 gi|312172682|emb|CBX80938.1| Holliday junction nuclease [Erwinia amylovora ATCC BAA-2158]
          Length = 173

 Score =  200 bits (511), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 54/135 (40%), Positives = 83/135 (61%), Gaps = 1/135 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I + V   L  RL  +Y G++++I  +RPE
Sbjct: 4   ILGIDPGSRVTGYGVIRQTGRQLSYLGSGCIRTSV-TDLPSRLKLIYAGVSEIITQFRPE 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR  AI++     +PV EYA   +K+ V+G+G  +K Q+
Sbjct: 63  YFAIEQVFMAKNADSALKLGQARGAAIVAAVNHDLPVFEYAARQVKQTVVGIGSAEKSQV 122

Query: 127 HMMLKMLMPESFFKG 141
             M++ L+       
Sbjct: 123 QHMVRTLLKLPANPQ 137


>gi|305665346|ref|YP_003861633.1| Holliday junction resolvase [Maribacter sp. HTCC2170]
 gi|88710101|gb|EAR02333.1| Holliday junction resolvase [Maribacter sp. HTCC2170]
          Length = 184

 Score =  200 bits (511), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 56/169 (33%), Positives = 89/169 (52%), Gaps = 3/169 (1%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M     I+GIDPG    G+GI+ V    + FV    ++    +    +L  ++E   ++I
Sbjct: 1   MSNEKIILGIDPGTTIMGFGIIKVVNKQMKFVQMNELLLQKYKDPYTKLKLIFERTIELI 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             + P+E A+E  F  K+  + LKLG+A+ +A+ +     IP++EY P  IK A+ G G+
Sbjct: 61  DTYHPDEIAIEAPFFGKNVQSMLKLGRAQGVAMAAGLSREIPITEYLPKKIKMAITGNGN 120

Query: 121 GDKKQIHMMLK-MLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
             K+Q+  ML+  L  +S  K  D+ D LA AVCH Y  N G  ++   
Sbjct: 121 ASKEQVAKMLQSTLGLKSLPKNLDSTDGLAAAVCHFY--NQGRVEVGKN 167


>gi|58698539|ref|ZP_00373441.1| crossover junction endodeoxyribonuclease RuvC [Wolbachia
           endosymbiont of Drosophila ananassae]
 gi|58534955|gb|EAL59052.1| crossover junction endodeoxyribonuclease RuvC [Wolbachia
           endosymbiont of Drosophila ananassae]
          Length = 162

 Score =  200 bits (511), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 66/161 (40%), Positives = 102/161 (63%), Gaps = 1/161 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           ++IIG+DPG+ +TGW I+ V   +N+ F+  GTI +  +     RL  ++E L  VI  +
Sbjct: 2   VKIIGLDPGISKTGWAIISVNEKNNIEFLGGGTISTDGKLGTGERLHIIFEQLKKVISLY 61

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P EAAVE++FVNK+  ++L LG AR + IL+  + ++ ++EY  N +KK++ G GH DK
Sbjct: 62  SPNEAAVEKIFVNKNPKSSLTLGYARGVVILALKITKLTMNEYDANYVKKSITGNGHADK 121

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYK 164
            QI  M+K ++     K   AADALA+A+CHAY   S + +
Sbjct: 122 DQIIFMVKQIVKNLNIKCHHAADALAVAICHAYTKGSCFVE 162


>gi|86132383|ref|ZP_01050977.1| crossover junction endodeoxyribonuclease RuvC [Dokdonia donghaensis
           MED134]
 gi|85816944|gb|EAQ38128.1| crossover junction endodeoxyribonuclease RuvC [Dokdonia donghaensis
           MED134]
          Length = 184

 Score =  200 bits (511), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 58/169 (34%), Positives = 89/169 (52%), Gaps = 3/169 (1%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M     I+GIDPG    G+G++ V G  + F+    ++         +L  ++E    +I
Sbjct: 1   MADEKIILGIDPGTTIMGFGLIKVVGKKMEFMQLNELLLQKYNDPYVKLKLIFERTIHLI 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             + P+E A+E  F  K+  + LKLG+A+ +A+ +     IP++EY P  IK AV G G+
Sbjct: 61  DTYHPDEIAIEAPFFGKNVQSMLKLGRAQGVAMAAGLSREIPITEYLPKKIKMAVTGNGN 120

Query: 121 GDKKQIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
             K+Q+  ML+ L+   +  K  DA D LA AVCH Y  NSG  +I   
Sbjct: 121 ASKEQVARMLQSLLKLKTLPKNLDATDGLAAAVCHFY--NSGKVEIGKS 167


>gi|213582031|ref|ZP_03363857.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
          Length = 162

 Score =  200 bits (511), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 53/135 (39%), Positives = 84/135 (62%), Gaps = 1/135 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I + V   L  RL  +Y G+T++I  ++P+
Sbjct: 4   ILGIDPGSRITGYGVIRQVGRQLTYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR +AI++     +PV EYA   +K+ V+G+G  +K Q+
Sbjct: 63  YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 122

Query: 127 HMMLKMLMPESFFKG 141
             M++ L+       
Sbjct: 123 QHMVRTLLKLPANPQ 137


>gi|161613546|ref|YP_001587511.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|167552466|ref|ZP_02346219.1| crossover junction endodeoxyribonuclease RuvC [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
 gi|168259827|ref|ZP_02681800.1| crossover junction endodeoxyribonuclease RuvC [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|198245392|ref|YP_002215187.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|200389414|ref|ZP_03216025.1| crossover junction endodeoxyribonuclease RuvC [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|189046078|sp|A9MUC2|RUVC_SALPB RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|226698764|sp|B5FSN3|RUVC_SALDC RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|161362910|gb|ABX66678.1| hypothetical protein SPAB_01266 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|197939908|gb|ACH77241.1| crossover junction endodeoxyribonuclease RuvC [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|199601859|gb|EDZ00405.1| crossover junction endodeoxyribonuclease RuvC [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|205322935|gb|EDZ10774.1| crossover junction endodeoxyribonuclease RuvC [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
 gi|205350788|gb|EDZ37419.1| crossover junction endodeoxyribonuclease RuvC [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|326622935|gb|EGE29280.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
          Length = 173

 Score =  200 bits (510), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 53/135 (39%), Positives = 84/135 (62%), Gaps = 1/135 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I + V   L  RL  +Y G+T++I  ++P+
Sbjct: 4   ILGIDPGSRITGYGVIRQVGRQLTYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR +AI++     +PV EYA   +K+ V+G+G  +K Q+
Sbjct: 63  YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 122

Query: 127 HMMLKMLMPESFFKG 141
             M++ L+       
Sbjct: 123 QHMVRTLLKLPANPQ 137


>gi|34541016|ref|NP_905495.1| Holliday junction resolvase [Porphyromonas gingivalis W83]
 gi|44888374|sp|Q7MUZ6|RUVC_PORGI RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|34397331|gb|AAQ66394.1| crossover junction endodeoxyribonuclease RuvC [Porphyromonas
           gingivalis W83]
          Length = 189

 Score =  200 bits (510), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 53/170 (31%), Positives = 90/170 (52%), Gaps = 3/170 (1%)

Query: 2   RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
            K   I+G+DPG    G+G++ V G+    ++ G I      +   RL ++++ +T +I 
Sbjct: 3   PKERIIMGVDPGTILMGYGMLHVVGNTPRLMAMGVIRLEKFDNHYIRLKRIFDRITGLID 62

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
            + P+E A+E  F  K+  + LKLG+A+ +A+ +     IP++EYAP  IK+A+ G G+ 
Sbjct: 63  EFLPDEMAIEAPFFGKNVQSMLKLGRAQGVAMAAALARDIPITEYAPMRIKQAITGNGNA 122

Query: 122 DKKQIHMMLKMLM---PESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
            K+Q+  ML+  +    E      DA D LA AVCH +  +    +    
Sbjct: 123 SKEQVAGMLQRYLRIPDEQMLPEMDATDGLAAAVCHFFQTSGPMARSGGS 172


>gi|297588496|ref|ZP_06947139.1| crossover junction endoribonuclease subunit C [Finegoldia magna
           ATCC 53516]
 gi|297573869|gb|EFH92590.1| crossover junction endoribonuclease subunit C [Finegoldia magna
           ATCC 53516]
          Length = 164

 Score =  200 bits (510), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 43/138 (31%), Positives = 75/138 (54%), Gaps = 1/138 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPG+   G+ I+D   + +  +  G I +  +  L  RL  +Y  +  +I  ++
Sbjct: 1   MRVLGIDPGIAIVGYSILDYDNNKIKCLEYGCITTSSKSPLPDRLSFIYNEMNKIIDEFQ 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           PE+ A E++F NK+    + + QAR + ILS     + + EY P  IK+AV+G G  DK+
Sbjct: 61  PEDCAFEELFFNKNVKTAITVSQARGVEILSCINKNLNLYEYTPLQIKQAVVGYGRADKR 120

Query: 125 QIHMMLKMLMP-ESFFKG 141
           Q+   +K ++      K 
Sbjct: 121 QVQETVKTILKFNDIPKP 138


>gi|149370094|ref|ZP_01889945.1| Holliday junction resolvase [unidentified eubacterium SCB49]
 gi|149356585|gb|EDM45141.1| Holliday junction resolvase [unidentified eubacterium SCB49]
          Length = 186

 Score =  200 bits (510), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 54/162 (33%), Positives = 92/162 (56%), Gaps = 2/162 (1%)

Query: 1   MRKSIRI-IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDV 59
           M K+ +I +GIDPG    G+G++ V G  + F+    +          RL  +++   ++
Sbjct: 1   MSKTEKIILGIDPGTSIMGFGLIKVVGKKMEFMLLNELQLSKYDDHYKRLKIIFDRTIEL 60

Query: 60  IKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVG 119
           I N+ P+E A+E  F  K+  + LKLG+A+ +A+ +     IP++EYAP  IK A+ G G
Sbjct: 61  IDNYHPDEIAIEAPFFGKNVQSMLKLGRAQGVAMAAGLSREIPITEYAPKKIKMAITGSG 120

Query: 120 HGDKKQIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHANS 160
           +  K+Q+  ML+ ++   +  K  D+ D LA AVCH Y++ +
Sbjct: 121 NASKEQVAKMLQSMLGLKTLPKNLDSTDGLAAAVCHFYNSGN 162


>gi|304396236|ref|ZP_07378118.1| crossover junction endodeoxyribonuclease RuvC [Pantoea sp. aB]
 gi|304356605|gb|EFM20970.1| crossover junction endodeoxyribonuclease RuvC [Pantoea sp. aB]
          Length = 175

 Score =  200 bits (510), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 51/135 (37%), Positives = 80/135 (59%), Gaps = 1/135 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I +     L  RL  +Y G+ ++I  + P+
Sbjct: 4   ILGIDPGSRITGYGVIRQTGRQLTYLGSGCIRTNT-TELPARLKLIYAGVCEIITQFSPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR  AI++     +PV EYA   +K+ V+G+G  +K Q+
Sbjct: 63  FFAIEQVFMAKNADSALKLGQARGAAIVAAVNHDLPVFEYAARQVKQTVVGIGSAEKSQV 122

Query: 127 HMMLKMLMPESFFKG 141
             M++ L+       
Sbjct: 123 QHMVRTLLKLPANPQ 137


>gi|226329882|ref|ZP_03805400.1| hypothetical protein PROPEN_03795 [Proteus penneri ATCC 35198]
 gi|225200677|gb|EEG83031.1| hypothetical protein PROPEN_03795 [Proteus penneri ATCC 35198]
          Length = 173

 Score =  200 bits (510), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 54/136 (39%), Positives = 84/136 (61%), Gaps = 1/136 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I + V   L  RL ++Y G++++I  + P+
Sbjct: 4   ILGIDPGSRVTGYGVIRQQGRQLIYLGSGCIRTQVP-DLPNRLKRIYAGVSEIITQFSPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             AVEQVF+ K+A + LKLGQAR +AIL+     +PV EYA   +K+ V+G G  +K Q+
Sbjct: 63  VFAVEQVFMAKNADSALKLGQARGVAILAAVNNDLPVFEYAARQVKQTVVGTGAAEKSQV 122

Query: 127 HMMLKMLMPESFFKGK 142
             M++ ++  S     
Sbjct: 123 QHMVRSILKLSAAPQS 138


>gi|257470233|ref|ZP_05634324.1| crossover junction endodeoxyribonuclease ruvC [Fusobacterium
           ulcerans ATCC 49185]
 gi|317064447|ref|ZP_07928932.1| crossover junction endodeoxyribonuclease ruvC [Fusobacterium
           ulcerans ATCC 49185]
 gi|313690123|gb|EFS26958.1| crossover junction endodeoxyribonuclease ruvC [Fusobacterium
           ulcerans ATCC 49185]
          Length = 190

 Score =  200 bits (510), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 42/138 (30%), Positives = 72/138 (52%), Gaps = 1/138 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPG    G+G++D        V  G   +     +  RLCQ+YE L D+IK + 
Sbjct: 1   MRVLGIDPGTAIVGFGVIDYEESKFKIVDYGCFYTDKDTPMEDRLCQIYEKLDDLIKKYN 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           PE  A+E++F  K+    + +GQAR + +L      + +  Y P  +K  + G G  +KK
Sbjct: 61  PEHMAIEELFFFKNNKTVISVGQARGVLLLCGKQNGLKIQGYTPLQVKTGITGYGKAEKK 120

Query: 125 QIHMMLKMLMP-ESFFKG 141
           Q+ +M++  +  +   K 
Sbjct: 121 QVQLMVQKFLGMKEIPKP 138


>gi|260598337|ref|YP_003210908.1| Holliday junction resolvase [Cronobacter turicensis z3032]
 gi|260217514|emb|CBA31693.1| Crossover junction endodeoxyribonuclease ruvC [Cronobacter
           turicensis z3032]
          Length = 173

 Score =  200 bits (510), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 53/135 (39%), Positives = 83/135 (61%), Gaps = 1/135 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I + V   L  RL  +Y G++++I  + P+
Sbjct: 4   ILGIDPGSRVTGYGVIRQTGRQLTYLGSGCIRTSV-TDLPSRLKLIYAGVSEIITQFHPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR  AI++     +PV EYA   +K+ V+G+G  +K Q+
Sbjct: 63  YFAIEQVFMAKNADSALKLGQARGAAIVAAVNQDLPVFEYAARQVKQTVVGIGSAEKSQV 122

Query: 127 HMMLKMLMPESFFKG 141
             M++ L+  S    
Sbjct: 123 QHMVRTLLKLSANPQ 137


>gi|188994977|ref|YP_001929229.1| Holliday junction resolvase [Porphyromonas gingivalis ATCC 33277]
 gi|238691482|sp|B2RJT7|RUVC_PORG3 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|188594657|dbj|BAG33632.1| putative crossover junction endodeoxyribonuclease RuvC
           [Porphyromonas gingivalis ATCC 33277]
          Length = 189

 Score =  200 bits (510), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 54/170 (31%), Positives = 91/170 (53%), Gaps = 3/170 (1%)

Query: 2   RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
            K   I+G+DPG    G+G++ VAG+    ++ G I      +   RL ++++ +T +I 
Sbjct: 3   PKERIIMGVDPGTILMGYGMLHVAGNTPRLMAMGVIRLEKFDNHYIRLKRIFDRITGLID 62

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
            + P+E A+E  F  K+  + LKLG+A+ +A+ +     IP++EYAP  IK+A+ G G+ 
Sbjct: 63  EFLPDEMAIEAPFFGKNVQSMLKLGRAQGVAMAAALARDIPITEYAPMRIKQAITGNGNA 122

Query: 122 DKKQIHMMLKMLM---PESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
            K+Q+  ML+  +    E      DA D LA AVCH +  +    +    
Sbjct: 123 SKEQVAGMLQRYLRIPDEQMLPEMDATDGLAAAVCHFFQTSGPMARSGGS 172


>gi|238919501|ref|YP_002933016.1| Holliday junction resolvase [Edwardsiella ictaluri 93-146]
 gi|259495687|sp|C5B9T0|RUVC_EDWI9 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|238869070|gb|ACR68781.1| crossover junction endodeoxyribonuclease RuvC, putative
           [Edwardsiella ictaluri 93-146]
          Length = 173

 Score =  200 bits (510), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 64/161 (39%), Positives = 99/161 (61%), Gaps = 2/161 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I + V   L  RL  +Y G++++I  + P+
Sbjct: 4   ILGIDPGSRITGYGVIRQQGRQLEYIGSGCIRTAVD-DLPTRLKLVYAGVSEIITQFNPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR  AI++     +PV EYA   IK+ V+G G  +K Q+
Sbjct: 63  CFAIEQVFMAKNADSALKLGQARGAAIVAAVNRDLPVFEYAARQIKQTVVGNGGAEKAQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
             M++ L+        DAADALA+A+ H + + +   +I+S
Sbjct: 123 QHMVRSLLKLPANPQADAADALAVAITHCHVSQNAL-RISS 162


>gi|62180476|ref|YP_216893.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|81309668|sp|Q57N99|RUVC_SALCH RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|62128109|gb|AAX65812.1| Holliday junction nuclease [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
          Length = 173

 Score =  200 bits (510), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 52/135 (38%), Positives = 83/135 (61%), Gaps = 1/135 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I + V   L  RL  +Y G+T++I  ++P+
Sbjct: 4   ILGIDPGSRITGYGVIRQVGRQLTYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQ R +AI++     +PV EYA   +K+ V+G+G  +K Q+
Sbjct: 63  YFAIEQVFMAKNADSALKLGQVRGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 122

Query: 127 HMMLKMLMPESFFKG 141
             M++ L+       
Sbjct: 123 QHMVRTLLKLPANPQ 137


>gi|30063273|ref|NP_837444.1| Holliday junction resolvase [Shigella flexneri 2a str. 2457T]
 gi|56479977|ref|NP_707723.2| Holliday junction resolvase [Shigella flexneri 2a str. 301]
 gi|110805807|ref|YP_689327.1| Holliday junction resolvase [Shigella flexneri 5 str. 8401]
 gi|44888402|sp|Q7UAE7|RUVC_SHIFL RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|123048149|sp|Q0T3U3|RUVC_SHIF8 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|30041525|gb|AAP17253.1| Holliday junction nuclease [Shigella flexneri 2a str. 2457T]
 gi|56383528|gb|AAN43430.2| Holliday junction nuclease [Shigella flexneri 2a str. 301]
 gi|110615355|gb|ABF04022.1| Holliday junction nuclease [Shigella flexneri 5 str. 8401]
 gi|281601278|gb|ADA74262.1| Crossover junction endodeoxyribonuclease ruvC [Shigella flexneri
           2002017]
 gi|313650641|gb|EFS15043.1| crossover junction endodeoxyribonuclease RuvC [Shigella flexneri 2a
           str. 2457T]
 gi|332757622|gb|EGJ87955.1| crossover junction endodeoxyribonuclease RuvC [Shigella flexneri
           2747-71]
 gi|332758051|gb|EGJ88377.1| crossover junction endodeoxyribonuclease RuvC [Shigella flexneri
           K-671]
 gi|332766839|gb|EGJ97040.1| crossover junction endodeoxyribonuclease RuvC [Shigella flexneri
           2930-71]
 gi|333004815|gb|EGK24337.1| crossover junction endodeoxyribonuclease RuvC [Shigella flexneri
           K-218]
 gi|333018587|gb|EGK37881.1| crossover junction endodeoxyribonuclease RuvC [Shigella flexneri
           K-304]
          Length = 173

 Score =  200 bits (510), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 53/135 (39%), Positives = 84/135 (62%), Gaps = 1/135 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I + V   L  RL  +Y G+T++I  ++P+
Sbjct: 4   ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR +AI++     +PV EYA   +K+ V+G+G  +K Q+
Sbjct: 63  YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGMGSAEKSQV 122

Query: 127 HMMLKMLMPESFFKG 141
             M++ L+       
Sbjct: 123 QHMVRTLLKLPANPQ 137


>gi|311279237|ref|YP_003941468.1| crossover junction endodeoxyribonuclease RuvC [Enterobacter cloacae
           SCF1]
 gi|308748432|gb|ADO48184.1| crossover junction endodeoxyribonuclease RuvC [Enterobacter cloacae
           SCF1]
          Length = 173

 Score =  200 bits (510), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 53/135 (39%), Positives = 84/135 (62%), Gaps = 1/135 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I + V   L  RL  +Y G+T++I  ++P+
Sbjct: 4   ILGIDPGSRVTGYGVIRQVGRQLTYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR +AI++     +PV EYA   +K+ V+G+G  +K Q+
Sbjct: 63  YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQDLPVFEYAARQVKQTVVGIGSAEKSQV 122

Query: 127 HMMLKMLMPESFFKG 141
             M++ L+       
Sbjct: 123 QHMVRTLLKLPANPQ 137


>gi|255534542|ref|YP_003094913.1| Holliday junction resolvase [Flavobacteriaceae bacterium 3519-10]
 gi|255340738|gb|ACU06851.1| Crossover junction endodeoxyribonuclease ruvC [Flavobacteriaceae
           bacterium 3519-10]
          Length = 184

 Score =  200 bits (510), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 50/162 (30%), Positives = 90/162 (55%), Gaps = 2/162 (1%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M+    I+GIDPG    G+G++ V    +  +S   ++     +   +L  +++    +I
Sbjct: 1   MQTEKIILGIDPGTTIMGFGLISVVKGKMEMLSIHELILKKYPNHETKLKVIFDRTLALI 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             + P+E A+E  F  K+  + LKLG+A+ +A+ +     IP++EY+P  IK A+ G G+
Sbjct: 61  DEFHPDEVALEAPFFGKNVQSMLKLGRAQGVAMAAALHRDIPITEYSPKKIKMAITGNGN 120

Query: 121 GDKKQIHMMLKMLMPESFFKG--KDAADALAIAVCHAYHANS 160
             K+Q+  ML+ L+    F     DA+D LA+AVCH +++ +
Sbjct: 121 ASKEQVAGMLQSLLNLKEFPTKYLDASDGLAVAVCHHFNSGA 162


>gi|206577404|ref|YP_002237746.1| crossover junction endodeoxyribonuclease RuvC [Klebsiella
           pneumoniae 342]
 gi|288934604|ref|YP_003438663.1| crossover junction endodeoxyribonuclease RuvC [Klebsiella variicola
           At-22]
 gi|290508805|ref|ZP_06548176.1| crossover junction endodeoxyribonuclease RuvC [Klebsiella sp.
           1_1_55]
 gi|226698758|sp|B5XQ03|RUVC_KLEP3 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|206566462|gb|ACI08238.1| crossover junction endodeoxyribonuclease RuvC [Klebsiella
           pneumoniae 342]
 gi|288889313|gb|ADC57631.1| crossover junction endodeoxyribonuclease RuvC [Klebsiella variicola
           At-22]
 gi|289778199|gb|EFD86196.1| crossover junction endodeoxyribonuclease RuvC [Klebsiella sp.
           1_1_55]
          Length = 173

 Score =  200 bits (510), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 53/135 (39%), Positives = 84/135 (62%), Gaps = 1/135 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I + V   L  RL  +Y G+T++I  ++P+
Sbjct: 4   ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR +AI++     +PV EYA   +K+ V+G+G  +K Q+
Sbjct: 63  YFAIEQVFMAKNADSALKLGQARGVAIVAATNQSLPVFEYAARQVKQTVVGIGSAEKSQV 122

Query: 127 HMMLKMLMPESFFKG 141
             M++ L+       
Sbjct: 123 QHMVRTLLKLPANPQ 137


>gi|167644750|ref|YP_001682413.1| Holliday junction resolvase [Caulobacter sp. K31]
 gi|189046060|sp|B0SUN7|RUVC_CAUSK RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|167347180|gb|ABZ69915.1| crossover junction endodeoxyribonuclease RuvC [Caulobacter sp. K31]
          Length = 169

 Score =  200 bits (510), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 78/155 (50%), Positives = 104/155 (67%)

Query: 2   RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           R  IRI+G+DPGLRRTGWG+V V G  +  V+ G IV   +   A RL  L+EG+  VI 
Sbjct: 6   RIPIRILGLDPGLRRTGWGVVSVEGSRMSHVAHGVIVPDEKGEFASRLLCLFEGICAVID 65

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
             RP+EAAVE+VF+N +A +TLKLG ARA A+++PA A + V+EY+   +KKAV+G G  
Sbjct: 66  AHRPDEAAVEEVFLNTNAQSTLKLGHARAAALIAPARAGLLVAEYSTRLVKKAVVGTGAA 125

Query: 122 DKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
           DK QI  M+  L+P +     D ADALA+A+ HA 
Sbjct: 126 DKAQIGFMIARLLPTAGKTTADCADALAVAITHAN 160


>gi|269138789|ref|YP_003295490.1| holliday junction resolvasome, endonuclease subunit [Edwardsiella
           tarda EIB202]
 gi|267984450|gb|ACY84279.1| holliday junction resolvasome, endonuclease subunit [Edwardsiella
           tarda EIB202]
 gi|304558781|gb|ADM41445.1| Crossover junction endodeoxyribonuclease RuvC [Edwardsiella tarda
           FL6-60]
          Length = 173

 Score =  200 bits (510), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 64/161 (39%), Positives = 99/161 (61%), Gaps = 2/161 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I + V   L  RL  +Y G++++I  + P+
Sbjct: 4   ILGIDPGSRITGYGVIRQQGRQLEYIGSGCIRTGVD-DLPTRLKLVYAGVSEIITQFNPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR  AI++     +PV EYA   IK+ V+G G  +K Q+
Sbjct: 63  CFAIEQVFMAKNADSALKLGQARGAAIVAAVNRDLPVFEYAARQIKQTVVGNGGAEKAQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
             M++ L+        DAADALA+A+ H + + +   +I+S
Sbjct: 123 QHMVRSLLKLPANPQADAADALAVAITHCHVSQNAL-RISS 162


>gi|289432334|ref|YP_003462207.1| crossover junction endodeoxyribonuclease RuvC [Dehalococcoides sp.
           GT]
 gi|288946054|gb|ADC73751.1| crossover junction endodeoxyribonuclease RuvC [Dehalococcoides sp.
           GT]
          Length = 167

 Score =  200 bits (509), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 64/165 (38%), Positives = 102/165 (61%), Gaps = 3/165 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPG    G+GI++ A D L  V   ++       +  RL  +Y+GL +VI+ ++
Sbjct: 1   MRILGIDPGTLVVGYGIIEAANDELTLVGFSSLTPPACAPIPQRLAYIYKGLVEVIELYQ 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+E AVE  F +K+  + L +G+A+A+A+L+ A   +PV+EY+P  IK  V G G+  K+
Sbjct: 61  PDEVAVESPFADKNIKSALAIGKAQAVALLAAANHSLPVTEYSPACIKSRVAGSGNASKE 120

Query: 125 QIHMMLKMLMPESFFK-GKDAADALAIAVCHAYHANSGYYKIASQ 168
           QI  M+++L+  +      DAADALA+A+CH  H+   +  I SQ
Sbjct: 121 QIQEMVRLLLNLAEIPQPNDAADALAVAICH--HSERAFTNIISQ 163


>gi|323698441|ref|ZP_08110353.1| crossover junction endodeoxyribonuclease RuvC [Desulfovibrio sp.
           ND132]
 gi|323458373|gb|EGB14238.1| crossover junction endodeoxyribonuclease RuvC [Desulfovibrio
           desulfuricans ND132]
          Length = 167

 Score =  200 bits (509), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 61/160 (38%), Positives = 95/160 (59%), Gaps = 1/160 (0%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M + + ++G+DPG R TG+GIV         V +GTI + VR+ +A R+  L+  L ++I
Sbjct: 1   MAEGLVVLGLDPGTRVTGYGIVRELSGKAELVDTGTIRTPVREDMATRMGVLFNRLQELI 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
           +   P EAA+E VFV+K+  + LKLGQAR   + + A+  IP+ EY P+ +KK ++G+G 
Sbjct: 61  RLHAPAEAAIENVFVSKNPSSALKLGQARGACMAACAVHNIPMGEYEPSKVKKNLVGLGS 120

Query: 121 GDKKQIHMMLKMLMPESFF-KGKDAADALAIAVCHAYHAN 159
             K Q+  M+   +        +DA+DALAIA+CH     
Sbjct: 121 APKSQVAYMVAHCLGVKKPDWPEDASDALAIAICHLNERR 160


>gi|320174358|gb|EFW49507.1| Crossover junction endodeoxyribonuclease RuvC [Shigella dysenteriae
           CDC 74-1112]
          Length = 173

 Score =  200 bits (509), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 53/135 (39%), Positives = 84/135 (62%), Gaps = 1/135 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I + V   L  RL  +Y G+T++I  ++P+
Sbjct: 4   ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR +AI++     +PV EYA   +K+ V+G+G  +K Q+
Sbjct: 63  YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 122

Query: 127 HMMLKMLMPESFFKG 141
             M++ L+       
Sbjct: 123 QHMVRTLLKLPANPQ 137


>gi|300775852|ref|ZP_07085712.1| crossover junction endoribonuclease subunit C [Chryseobacterium
           gleum ATCC 35910]
 gi|300505402|gb|EFK36540.1| crossover junction endoribonuclease subunit C [Chryseobacterium
           gleum ATCC 35910]
          Length = 184

 Score =  200 bits (509), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 53/162 (32%), Positives = 89/162 (54%), Gaps = 2/162 (1%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M     I+GIDPG    G+GI+ V    +  VS   ++     +   +L  ++E    +I
Sbjct: 1   MISEKIILGIDPGTTVMGFGIISVKKGKMELVSIHELILKKYPNHETKLKYIFERTLSLI 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             + P+E A+E  F  K+  + LKLG+A+ +A+ +     IP++EY+P  IK A+ G G+
Sbjct: 61  DEFHPDEVALEAPFYGKNVQSMLKLGRAQGVAMAASLYRNIPITEYSPKKIKMAITGNGN 120

Query: 121 GDKKQIHMMLKMLMPESFFKG--KDAADALAIAVCHAYHANS 160
             K+Q+  ML+ L+    F     DA+D LA+AVCH +++ +
Sbjct: 121 ASKEQVAGMLQNLLKLKEFPTKYLDASDGLAVAVCHHFNSGT 162


>gi|298207569|ref|YP_003715748.1| Holliday junction resolvase [Croceibacter atlanticus HTCC2559]
 gi|83850205|gb|EAP88073.1| Holliday junction resolvase [Croceibacter atlanticus HTCC2559]
          Length = 184

 Score =  200 bits (509), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 52/169 (30%), Positives = 88/169 (52%), Gaps = 3/169 (1%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M K   I+GIDPG    G+G++ V    +  +    +          +L  ++E   ++I
Sbjct: 1   MSKERIILGIDPGTTIMGFGVIKVVNKKMECLQLNELQLKKYTDPYIKLKLIFERTIELI 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             + P+E A+E  F  K+  + LKLG+A+ +A+ +     +PV+EY P  IK A+ G G+
Sbjct: 61  DTFNPDEIAIEAPFFGKNVQSMLKLGRAQGVAMAAGLSREVPVTEYLPKKIKMAITGNGN 120

Query: 121 GDKKQIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
             K+Q+  ML+ ++   +  K  D+ D LA AVCH Y  N+G  ++   
Sbjct: 121 ASKEQVAKMLQSVLKLKTLPKNLDSTDGLAAAVCHFY--NTGRIEVGKS 167


>gi|144898112|emb|CAM74976.1| Crossover junction endodeoxyribonuclease [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 164

 Score =  200 bits (509), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 79/163 (48%), Positives = 112/163 (68%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++G+DPGLR TGWG++++  + L ++  GTI S  + SLA RL QL+ G+  VI  W 
Sbjct: 1   MRVLGLDPGLRITGWGMIEMIDNRLRYLGDGTIRSDDKLSLAERLGQLHRGVLQVIAAWS 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ A VEQ FVNK+  +TLKLGQAR + +L+PALA + V EYAP  +K+AV+G G   K+
Sbjct: 61  PDAAGVEQTFVNKNPESTLKLGQARGVVLLAPALAGLEVGEYAPTQVKQAVVGTGRAAKE 120

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
           Q+ MM++ L+P       DAADALA+A+CHA+HA +     A 
Sbjct: 121 QVGMMVRTLLPGCLVTSADAADALAVAICHAHHAATARRLKAG 163


>gi|319404768|emb|CBI78369.1| Holliday junction nuclease ruvC [Bartonella rochalimae ATCC
           BAA-1498]
          Length = 169

 Score =  200 bits (509), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 101/168 (60%), Positives = 133/168 (79%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M  +IRIIGIDPGLRRTGWG++D+ G++L FV+SGT+ S  +  LA RLC+LYEGL+ V+
Sbjct: 1   MVDTIRIIGIDPGLRRTGWGVIDLCGNHLHFVASGTLHSNAQNDLASRLCELYEGLSKVV 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             + P EAAVE VFVNK+A  TLKLGQARAIA+L PA   +P+SEYAPN +KK+VIGVGH
Sbjct: 61  HQFMPHEAAVEHVFVNKNAATTLKLGQARAIALLVPAQEGLPISEYAPNKVKKSVIGVGH 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
           G+K+QIHMM+K+L+P + F   DAADALA+A+CH+ H  +  Y++ + 
Sbjct: 121 GEKEQIHMMVKILLPRAEFDSSDAADALALAICHSAHHTNPSYRLKAS 168


>gi|124010040|ref|ZP_01694702.1| crossover junction endodeoxyribonuclease RuvC [Microscilla marina
           ATCC 23134]
 gi|123983927|gb|EAY24322.1| crossover junction endodeoxyribonuclease RuvC [Microscilla marina
           ATCC 23134]
          Length = 188

 Score =  200 bits (509), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 55/164 (33%), Positives = 98/164 (59%), Gaps = 2/164 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           IIGIDPG +  G+G++ V G  +  V  G I      + A +L +++E ++ +++ + P+
Sbjct: 10  IIGIDPGTQLMGYGLILVKGKKVSVVQYGVIHLAKYSNHALKLKKIFERVSQLVEEYLPD 69

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E  F+ K+  A LKLG+A+ +A+ +  + +IP++EYAP  +K++V G G+  K+Q+
Sbjct: 70  EMALEAPFMGKNVQAALKLGRAQGVAMSAALVRQIPIAEYAPRKVKQSVTGSGNASKEQV 129

Query: 127 HMMLKMLMPESFFKGK--DAADALAIAVCHAYHANSGYYKIASQ 168
             ML+  +  +F +    DA+DAL +A+CH +    G    A  
Sbjct: 130 ARMLEKQLNFTFHENDTLDASDALGVALCHYFQGKLGGMNKAKS 173


>gi|163753114|ref|ZP_02160238.1| Holliday junction resolvase [Kordia algicida OT-1]
 gi|161326846|gb|EDP98171.1| Holliday junction resolvase [Kordia algicida OT-1]
          Length = 191

 Score =  200 bits (509), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 50/154 (32%), Positives = 87/154 (56%), Gaps = 1/154 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG    G+G++ V G  + F+    +     +    +L  ++E   ++I  + P+
Sbjct: 14  ILGIDPGTTIMGFGLIKVVGKKMHFLQLNELQLQKYKDHYLKLKLIFERTVELIDTYHPD 73

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E  F  K+  + LKLG+A+ +A+ +     +P++EY+P  IK A+ G G+  K+Q+
Sbjct: 74  EIAIEAPFFGKNVQSMLKLGRAQGVAMAAGLSREVPITEYSPKKIKMAITGNGNASKEQV 133

Query: 127 HMMLKMLM-PESFFKGKDAADALAIAVCHAYHAN 159
             ML+ L+  ++  K  D+ D LA AVCH Y+  
Sbjct: 134 AKMLQSLLQLKTLPKNLDSTDGLAAAVCHFYNEG 167


>gi|332161517|ref|YP_004298094.1| Holliday junction resolvase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318605499|emb|CBY26997.1| crossover junction endodeoxyribonuclease RuvC [Yersinia
           enterocolitica subsp. palearctica Y11]
 gi|325665747|gb|ADZ42391.1| Holliday junction resolvase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330860792|emb|CBX71079.1| crossover junction endodeoxyribonuclease ruvC [Yersinia
           enterocolitica W22703]
          Length = 173

 Score =  200 bits (509), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 50/135 (37%), Positives = 81/135 (60%), Gaps = 1/135 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           ++GIDPG R TG+G++   G  L ++ SG I + V   +  RL  +Y G+T++I  ++P+
Sbjct: 4   VLGIDPGSRVTGYGVIRQQGRQLTYLGSGCIRTVVD-DMPTRLKLIYAGVTEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+  + LKLGQAR  AI++     +PV EYA   +K+ V+G G  +K Q+
Sbjct: 63  FFAIEQVFMAKNPDSALKLGQARGAAIVAAVNLNLPVFEYAARQVKQTVVGTGAAEKSQV 122

Query: 127 HMMLKMLMPESFFKG 141
             M++ L+       
Sbjct: 123 QHMVRSLLKLPANPQ 137


>gi|320182599|gb|EFW57488.1| Crossover junction endodeoxyribonuclease RuvC [Shigella boydii ATCC
           9905]
          Length = 173

 Score =  200 bits (509), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 53/135 (39%), Positives = 84/135 (62%), Gaps = 1/135 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I + V   L  RL  +Y G+T++I  ++P+
Sbjct: 4   ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR +AI++     +PV EYA   +K+ V+G+G  +K Q+
Sbjct: 63  YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 122

Query: 127 HMMLKMLMPESFFKG 141
             M++ L+       
Sbjct: 123 QHMVRTLLKLPANPQ 137


>gi|283785601|ref|YP_003365466.1| crossover junction endodeoxyribonuclease [Citrobacter rodentium
           ICC168]
 gi|282949055|emb|CBG88658.1| crossover junction endodeoxyribonuclease [Citrobacter rodentium
           ICC168]
          Length = 174

 Score =  200 bits (509), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 53/135 (39%), Positives = 84/135 (62%), Gaps = 1/135 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I + V   L  RL  +Y G+T++I  ++P+
Sbjct: 5   ILGIDPGSRVTGYGVIRQVGRQLTYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQPD 63

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR +AI++     +PV EYA   +K+ V+G+G  +K Q+
Sbjct: 64  YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQSLPVFEYAARQVKQTVVGIGSAEKSQV 123

Query: 127 HMMLKMLMPESFFKG 141
             M++ L+       
Sbjct: 124 QHMVRTLLKLPANPQ 138


>gi|308187174|ref|YP_003931305.1| crossover junction endodeoxyribonuclease [Pantoea vagans C9-1]
 gi|308057684|gb|ADO09856.1| crossover junction endodeoxyribonuclease [Pantoea vagans C9-1]
          Length = 175

 Score =  200 bits (509), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 51/135 (37%), Positives = 80/135 (59%), Gaps = 1/135 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I +     L  RL  +Y G+ ++I  + P+
Sbjct: 4   ILGIDPGSRITGYGVIRQTGRQLTYLGSGCIRTNTP-ELPARLKLIYAGVCEIITQFSPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR  AI++     +PV EYA   +K+ V+G+G  +K Q+
Sbjct: 63  FFAIEQVFMAKNADSALKLGQARGAAIVAAVNHDLPVFEYAARQVKQTVVGIGSAEKSQV 122

Query: 127 HMMLKMLMPESFFKG 141
             M++ L+       
Sbjct: 123 QHMVRTLLKLPANPQ 137


>gi|238796295|ref|ZP_04639804.1| Crossover junction endodeoxyribonuclease ruvC [Yersinia mollaretii
           ATCC 43969]
 gi|238719740|gb|EEQ11547.1| Crossover junction endodeoxyribonuclease ruvC [Yersinia mollaretii
           ATCC 43969]
          Length = 173

 Score =  200 bits (509), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 52/135 (38%), Positives = 82/135 (60%), Gaps = 1/135 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I + V   +  RL  +Y G+T++I  ++P+
Sbjct: 4   ILGIDPGSRVTGYGVIRQEGRQLTYLGSGCIRTVVD-DMPTRLKLIYAGVTEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+  + LKLGQAR  AI++     +PVSEYA   +K+ V+G G  +K Q+
Sbjct: 63  FFAIEQVFMAKNPDSALKLGQARGAAIVAAVNLDLPVSEYAARQVKQTVVGTGAAEKSQV 122

Query: 127 HMMLKMLMPESFFKG 141
             M++ L+       
Sbjct: 123 QHMVRSLLKLPANPQ 137


>gi|113460654|ref|YP_718720.1| Holliday junction resolvase [Haemophilus somnus 129PT]
 gi|123327176|sp|Q0I243|RUVC_HAES1 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|112822697|gb|ABI24786.1| Holliday junction endonuclease RuvC [Haemophilus somnus 129PT]
          Length = 189

 Score =  200 bits (509), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 56/135 (41%), Positives = 83/135 (61%), Gaps = 1/135 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G+V   G  L ++ SG I + +   L  RL ++Y G+T++I  + P 
Sbjct: 4   ILGIDPGSRVTGYGVVRQVGHKLEYLGSGVIRTSID-DLPTRLKRIYAGITEIITQFNPN 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+EQVF+ K+  + LKLGQAR  AI++     +PV EY+P TIK+ V+G G  +K Q+
Sbjct: 63  EFAIEQVFMAKNPDSALKLGQARGTAIVAAVNQNLPVFEYSPRTIKQTVVGTGAAEKSQV 122

Query: 127 HMMLKMLMPESFFKG 141
             M+  L+  S    
Sbjct: 123 QEMVVRLLQLSDKPQ 137


>gi|302389939|ref|YP_003825760.1| crossover junction endodeoxyribonuclease RuvC [Thermosediminibacter
           oceani DSM 16646]
 gi|302200567|gb|ADL08137.1| crossover junction endodeoxyribonuclease RuvC [Thermosediminibacter
           oceani DSM 16646]
          Length = 177

 Score =  199 bits (508), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 47/136 (34%), Positives = 81/136 (59%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + I+GIDPG+  +G+G+V   G     +  G + +    S+  RL  +YEG  ++I+N++
Sbjct: 11  MIIMGIDPGIAISGYGVVCCNGTEFEVLDFGVLKTESSLSVPERLKAIYEGYLNLIENYK 70

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P   AVE++F NK+A   + +GQAR +A+L+ A   + V EY P  +K+AV+G G  +K 
Sbjct: 71  PAAIAVEELFFNKNAKTAIAVGQARGVALLAAASRNVKVYEYTPLQVKQAVVGYGRAEKM 130

Query: 125 QIHMMLKMLMPESFFK 140
           Q+  M+++L+      
Sbjct: 131 QVQEMVRVLLNLKTIP 146


>gi|291617755|ref|YP_003520497.1| RuvC [Pantoea ananatis LMG 20103]
 gi|291152785|gb|ADD77369.1| RuvC [Pantoea ananatis LMG 20103]
 gi|327394174|dbj|BAK11596.1| Crossover junction endodeoxyribonuclease RuvC [Pantoea ananatis
           AJ13355]
          Length = 175

 Score =  199 bits (508), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 52/135 (38%), Positives = 80/135 (59%), Gaps = 1/135 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I +     L  RL  +Y G+ ++I  + P+
Sbjct: 4   ILGIDPGSRVTGYGVIRQTGRQLTYLGSGCIRTNT-TELPARLKLIYAGVCEIITQFSPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR  AI++     +PV EYA   +K+ V+G G  +K Q+
Sbjct: 63  FFAIEQVFMAKNADSALKLGQARGAAIVAAVNHDLPVFEYAARQVKQTVVGTGGAEKSQV 122

Query: 127 HMMLKMLMPESFFKG 141
             M+K L+  +    
Sbjct: 123 QHMVKSLLKLAANPQ 137


>gi|259908218|ref|YP_002648574.1| Holliday junction resolvase [Erwinia pyrifoliae Ep1/96]
 gi|224963840|emb|CAX55342.1| Crossover junction endodeoxyribonuclease [Erwinia pyrifoliae
           Ep1/96]
 gi|283478148|emb|CAY74064.1| Holliday junction nuclease [Erwinia pyrifoliae DSM 12163]
 gi|310767867|gb|ADP12817.1| Holliday junction resolvase [Erwinia sp. Ejp617]
          Length = 173

 Score =  199 bits (508), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 54/135 (40%), Positives = 83/135 (61%), Gaps = 1/135 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I + V   L  RL  +Y G++++I  +RPE
Sbjct: 4   ILGIDPGSRVTGYGVIRQTGRQLSYLGSGCIRTSV-TDLPSRLKLIYAGVSEIITQFRPE 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR  AI++     +PV EYA   +K+ V+G+G  +K Q+
Sbjct: 63  YFAIEQVFMAKNADSALKLGQARGAAIVAAVNQDLPVFEYAARQVKQTVVGIGSAEKSQV 122

Query: 127 HMMLKMLMPESFFKG 141
             M++ L+       
Sbjct: 123 QHMVRTLLKLPANPQ 137


>gi|225629965|ref|YP_002726756.1| crossover junction endodeoxyribonuclease RuvC [Wolbachia sp. wRi]
 gi|254767489|sp|C0R5C3|RUVC_WOLWR RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|225591946|gb|ACN94965.1| crossover junction endodeoxyribonuclease RuvC [Wolbachia sp. wRi]
          Length = 162

 Score =  199 bits (508), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 65/161 (40%), Positives = 102/161 (63%), Gaps = 1/161 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           ++IIG+DPG+ +TGW I+ +   +N+ F+  GTI +  +     RL  ++E L  VI  +
Sbjct: 2   VKIIGLDPGISKTGWAIISLNEKNNIEFLGGGTISTDGKLGTGERLHIIFEQLKKVISLY 61

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P EAAVE++FVNK+  ++L LG AR + IL+  + ++ ++EY  N +KK++ G GH DK
Sbjct: 62  SPNEAAVEKIFVNKNPKSSLTLGYARGVVILALKITKLTMNEYDANYVKKSITGNGHADK 121

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYK 164
            QI  M+K ++     K   AADALA+A+CHAY   S + +
Sbjct: 122 DQIIFMVKQIVKNLNIKCHHAADALAVAICHAYTKGSCFVE 162


>gi|282860256|ref|ZP_06269327.1| crossover junction endodeoxyribonuclease RuvC [Prevotella bivia
           JCVIHMP010]
 gi|282586989|gb|EFB92223.1| crossover junction endodeoxyribonuclease RuvC [Prevotella bivia
           JCVIHMP010]
          Length = 192

 Score =  199 bits (508), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 52/156 (33%), Positives = 84/156 (53%), Gaps = 3/156 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG    G+G++ + G+    +  G I     + +  RL ++++ +T +I  + P+
Sbjct: 12  ILGIDPGTNVMGYGLLHIVGNKAELIVMGVIDMRKEKDVYLRLGKIFDRVTGIIDEYLPD 71

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E  F  K+  + LKLG+A+ +AI +     +P+ EYAP  IK A+ G G   K+Q+
Sbjct: 72  ELAIEAPFFGKNVQSMLKLGRAQGVAIAAAIHHDVPIHEYAPLKIKMAITGNGAASKEQV 131

Query: 127 HMMLKMLMPE---SFFKGKDAADALAIAVCHAYHAN 159
             ML+ L+           DA DA+A A CH    N
Sbjct: 132 AKMLQKLLHLRDDQMPHFMDATDAIAAAYCHFLQIN 167


>gi|307565534|ref|ZP_07628014.1| crossover junction endodeoxyribonuclease RuvC [Prevotella amnii
           CRIS 21A-A]
 gi|307345693|gb|EFN91050.1| crossover junction endodeoxyribonuclease RuvC [Prevotella amnii
           CRIS 21A-A]
          Length = 193

 Score =  199 bits (508), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 52/156 (33%), Positives = 84/156 (53%), Gaps = 3/156 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG    G+G++   G+    +  G I     + +  RL ++++ +T +I+ + P+
Sbjct: 12  ILGIDPGTNVMGYGLLRAVGNKANLIVMGIIDMRKEKDIYLRLGKIFDRVTGIIEEYLPD 71

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E  F  K+  + LKLG+A+ +AI +     IP+ EYAP  IK A+ G G   K+Q+
Sbjct: 72  ELAIEAPFFGKNVQSMLKLGRAQGVAIAAAIHHDIPIHEYAPLKIKMAITGNGAASKEQV 131

Query: 127 HMMLKMLMPE---SFFKGKDAADALAIAVCHAYHAN 159
             ML+ L+           DA DA+  A CH   +N
Sbjct: 132 ANMLQKLLHLRDDQMPHFMDATDAVGAAYCHFLQSN 167


>gi|238786429|ref|ZP_04630349.1| Crossover junction endodeoxyribonuclease ruvC [Yersinia bercovieri
           ATCC 43970]
 gi|238712663|gb|EEQ04755.1| Crossover junction endodeoxyribonuclease ruvC [Yersinia bercovieri
           ATCC 43970]
          Length = 173

 Score =  199 bits (508), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 51/135 (37%), Positives = 82/135 (60%), Gaps = 1/135 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           ++GIDPG R TG+G++   G  L ++ SG I + V   +  RL  +Y G+T++I  ++P+
Sbjct: 4   VLGIDPGSRVTGYGVIRQEGRQLTYLGSGCIRTVVD-DMPTRLKLIYAGVTEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+  + LKLGQAR  AI++     +PVSEYA   +K+ V+G G  +K Q+
Sbjct: 63  FFAIEQVFMAKNPDSALKLGQARGAAIVAAVNLNLPVSEYAARQVKQTVVGTGAAEKSQV 122

Query: 127 HMMLKMLMPESFFKG 141
             M++ L+       
Sbjct: 123 QHMVRSLLKLPANPQ 137


>gi|22126140|ref|NP_669563.1| Holliday junction resolvase [Yersinia pestis KIM 10]
 gi|45441701|ref|NP_993240.1| Holliday junction resolvase [Yersinia pestis biovar Microtus str.
           91001]
 gi|51596365|ref|YP_070556.1| Holliday junction resolvase [Yersinia pseudotuberculosis IP 32953]
 gi|108807434|ref|YP_651350.1| Holliday junction resolvase [Yersinia pestis Antiqua]
 gi|108811696|ref|YP_647463.1| Holliday junction resolvase [Yersinia pestis Nepal516]
 gi|145598361|ref|YP_001162437.1| Holliday junction resolvase [Yersinia pestis Pestoides F]
 gi|149366015|ref|ZP_01888050.1| crossover junction endodeoxyribonuclease [Yersinia pestis
           CA88-4125]
 gi|153949084|ref|YP_001401005.1| Holliday junction resolvase [Yersinia pseudotuberculosis IP 31758]
 gi|162418674|ref|YP_001606845.1| Holliday junction resolvase [Yersinia pestis Angola]
 gi|165926386|ref|ZP_02222218.1| crossover junction endodeoxyribonuclease RuvC [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165938887|ref|ZP_02227441.1| crossover junction endodeoxyribonuclease RuvC [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|166009096|ref|ZP_02229994.1| crossover junction endodeoxyribonuclease RuvC [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166210551|ref|ZP_02236586.1| crossover junction endodeoxyribonuclease RuvC [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|167401485|ref|ZP_02306982.1| crossover junction endodeoxyribonuclease RuvC [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167420351|ref|ZP_02312104.1| crossover junction endodeoxyribonuclease RuvC [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167424499|ref|ZP_02316252.1| crossover junction endodeoxyribonuclease RuvC [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|167470864|ref|ZP_02335568.1| crossover junction endodeoxyribonuclease RuvC [Yersinia pestis
           FV-1]
 gi|170024379|ref|YP_001720884.1| Holliday junction resolvase [Yersinia pseudotuberculosis YPIII]
 gi|186895406|ref|YP_001872518.1| Holliday junction resolvase [Yersinia pseudotuberculosis PB1/+]
 gi|218929163|ref|YP_002347038.1| Holliday junction resolvase [Yersinia pestis CO92]
 gi|229894770|ref|ZP_04509950.1| component of RuvABC resolvasome, endonuclease [Yersinia pestis
           Pestoides A]
 gi|229897472|ref|ZP_04512628.1| component of RuvABC resolvasome, endonuclease [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229898119|ref|ZP_04513268.1| component of RuvABC resolvasome, endonuclease [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229901978|ref|ZP_04517099.1| component of RuvABC resolvasome, endonuclease [Yersinia pestis
           Nepal516]
 gi|270490838|ref|ZP_06207912.1| crossover junction endodeoxyribonuclease RuvC [Yersinia pestis KIM
           D27]
 gi|294503878|ref|YP_003567940.1| Holliday junction resolvase [Yersinia pestis Z176003]
 gi|20978748|sp|Q8ZEU7|RUVC_YERPE RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|81639433|sp|Q66AU1|RUVC_YERPS RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|123372470|sp|Q1C817|RUVC_YERPA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|123373280|sp|Q1CJG7|RUVC_YERPN RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|166233312|sp|A4TJK2|RUVC_YERPP RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|167012684|sp|A7FIC7|RUVC_YERP3 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|226698770|sp|A9QYX5|RUVC_YERPG RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|238688452|sp|B1JLL2|RUVC_YERPY RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|238691370|sp|B2K322|RUVC_YERPB RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|21959101|gb|AAM85814.1|AE013828_5 Holliday junction nuclease [Yersinia pestis KIM 10]
 gi|45436563|gb|AAS62117.1| crossover junction endodeoxyribonuclease [Yersinia pestis biovar
           Microtus str. 91001]
 gi|51589647|emb|CAH21277.1| crossover junction endodeoxyribonuclease [Yersinia
           pseudotuberculosis IP 32953]
 gi|108775344|gb|ABG17863.1| Holliday junction endonuclease RuvC [Yersinia pestis Nepal516]
 gi|108779347|gb|ABG13405.1| Holliday junction endonuclease RuvC [Yersinia pestis Antiqua]
 gi|115347774|emb|CAL20691.1| crossover junction endodeoxyribonuclease [Yersinia pestis CO92]
 gi|145210057|gb|ABP39464.1| Holliday junction endonuclease RuvC [Yersinia pestis Pestoides F]
 gi|149292428|gb|EDM42502.1| crossover junction endodeoxyribonuclease [Yersinia pestis
           CA88-4125]
 gi|152960579|gb|ABS48040.1| crossover junction endodeoxyribonuclease RuvC [Yersinia
           pseudotuberculosis IP 31758]
 gi|162351489|gb|ABX85437.1| crossover junction endodeoxyribonuclease RuvC [Yersinia pestis
           Angola]
 gi|165913250|gb|EDR31873.1| crossover junction endodeoxyribonuclease RuvC [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|165921607|gb|EDR38804.1| crossover junction endodeoxyribonuclease RuvC [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165991651|gb|EDR43952.1| crossover junction endodeoxyribonuclease RuvC [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166207731|gb|EDR52211.1| crossover junction endodeoxyribonuclease RuvC [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|166962046|gb|EDR58067.1| crossover junction endodeoxyribonuclease RuvC [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167049181|gb|EDR60589.1| crossover junction endodeoxyribonuclease RuvC [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167056381|gb|EDR66150.1| crossover junction endodeoxyribonuclease RuvC [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|169750913|gb|ACA68431.1| crossover junction endodeoxyribonuclease RuvC [Yersinia
           pseudotuberculosis YPIII]
 gi|186698432|gb|ACC89061.1| crossover junction endodeoxyribonuclease RuvC [Yersinia
           pseudotuberculosis PB1/+]
 gi|229680874|gb|EEO76969.1| component of RuvABC resolvasome, endonuclease [Yersinia pestis
           Nepal516]
 gi|229688835|gb|EEO80902.1| component of RuvABC resolvasome, endonuclease [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229693809|gb|EEO83858.1| component of RuvABC resolvasome, endonuclease [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229702243|gb|EEO90262.1| component of RuvABC resolvasome, endonuclease [Yersinia pestis
           Pestoides A]
 gi|262362003|gb|ACY58724.1| Holliday junction resolvase [Yersinia pestis D106004]
 gi|262365860|gb|ACY62417.1| Holliday junction resolvase [Yersinia pestis D182038]
 gi|270339342|gb|EFA50119.1| crossover junction endodeoxyribonuclease RuvC [Yersinia pestis KIM
           D27]
 gi|294354337|gb|ADE64678.1| Holliday junction resolvase [Yersinia pestis Z176003]
 gi|320015266|gb|ADV98837.1| component of RuvABC resolvasome, endonuclease [Yersinia pestis
           biovar Medievalis str. Harbin 35]
          Length = 173

 Score =  199 bits (508), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 51/135 (37%), Positives = 82/135 (60%), Gaps = 1/135 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           ++GIDPG R TG+G++   G  L ++ SG I + V   +  RL  +Y G+T++I  ++P+
Sbjct: 4   VLGIDPGSRVTGYGVIRQQGRQLTYLGSGCIRTVVD-DMPTRLKLIYAGVTEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+  + LKLGQAR  AI++     +PVSEYA   +K+ V+G G  +K Q+
Sbjct: 63  FFAIEQVFMAKNPDSALKLGQARGAAIVAAVNLNLPVSEYAARQVKQTVVGTGAAEKSQV 122

Query: 127 HMMLKMLMPESFFKG 141
             M++ L+       
Sbjct: 123 QHMVRSLLKLPANPQ 137


>gi|302380677|ref|ZP_07269142.1| crossover junction endodeoxyribonuclease RuvC [Finegoldia magna
           ACS-171-V-Col3]
 gi|302311620|gb|EFK93636.1| crossover junction endodeoxyribonuclease RuvC [Finegoldia magna
           ACS-171-V-Col3]
          Length = 164

 Score =  199 bits (508), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 42/138 (30%), Positives = 77/138 (55%), Gaps = 1/138 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPG+   G+ I+D   + +  +  G I +  + +L  RL  +Y+ +  +I  ++
Sbjct: 1   MRVLGIDPGIAIVGYSILDYDNNKIKCLEYGCITTSSKSALPDRLSFIYQEMNKIIDEFQ 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P++ A E++F NK+    + + QAR + ILS     + + EY P  IK+AV+G G  DK+
Sbjct: 61  PDDCAFEELFFNKNVKTAITVSQARGVEILSCINKDLSLYEYTPLQIKQAVVGYGRADKR 120

Query: 125 QIHMMLKMLMP-ESFFKG 141
           Q+   +K ++      K 
Sbjct: 121 QVQETVKTILKFNEIPKP 138


>gi|333003474|gb|EGK23017.1| crossover junction endodeoxyribonuclease RuvC [Shigella flexneri
           VA-6]
          Length = 173

 Score =  199 bits (508), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 53/135 (39%), Positives = 84/135 (62%), Gaps = 1/135 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I + V   L  RL  +Y G+T++I  ++P+
Sbjct: 4   ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR +AI++     +PV EYA   +K+ V+G+G  +K Q+
Sbjct: 63  YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGMGSAEKSQV 122

Query: 127 HMMLKMLMPESFFKG 141
             M++ L+       
Sbjct: 123 QHMVRTLLKLPANPQ 137


>gi|15802276|ref|NP_288300.1| Holliday junction resolvase [Escherichia coli O157:H7 EDL933]
 gi|15831827|ref|NP_310600.1| Holliday junction resolvase [Escherichia coli O157:H7 str. Sakai]
 gi|16129816|ref|NP_416377.1| component of RuvABC resolvasome, endonuclease [Escherichia coli
           str. K-12 substr. MG1655]
 gi|82543702|ref|YP_407649.1| Holliday junction resolvase [Shigella boydii Sb227]
 gi|82776449|ref|YP_402798.1| Holliday junction resolvase [Shigella dysenteriae Sd197]
 gi|89108703|ref|AP_002483.1| component of RuvABC resolvasome, endonuclease [Escherichia coli
           str. K-12 substr. W3110]
 gi|91211088|ref|YP_541074.1| Holliday junction resolvase [Escherichia coli UTI89]
 gi|110641981|ref|YP_669711.1| Holliday junction resolvase [Escherichia coli 536]
 gi|157161332|ref|YP_001458650.1| Holliday junction resolvase [Escherichia coli HS]
 gi|168747890|ref|ZP_02772912.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           O157:H7 str. EC4113]
 gi|168757897|ref|ZP_02782904.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           O157:H7 str. EC4401]
 gi|168762343|ref|ZP_02787350.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           O157:H7 str. EC4501]
 gi|168770846|ref|ZP_02795853.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           O157:H7 str. EC4486]
 gi|168776590|ref|ZP_02801597.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           O157:H7 str. EC4196]
 gi|168783163|ref|ZP_02808170.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           O157:H7 str. EC4076]
 gi|168801901|ref|ZP_02826908.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           O157:H7 str. EC508]
 gi|170019792|ref|YP_001724746.1| Holliday junction resolvase [Escherichia coli ATCC 8739]
 gi|170081519|ref|YP_001730839.1| component of RuvABC resolvasome, endonuclease [Escherichia coli
           str. K-12 substr. DH10B]
 gi|170682372|ref|YP_001743381.1| Holliday junction resolvase [Escherichia coli SMS-3-5]
 gi|170769344|ref|ZP_02903797.1| crossover junction endodeoxyribonuclease RuvC [Escherichia albertii
           TW07627]
 gi|187733397|ref|YP_001879759.1| Holliday junction resolvase [Shigella boydii CDC 3083-94]
 gi|188495826|ref|ZP_03003096.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           53638]
 gi|191168063|ref|ZP_03029862.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           B7A]
 gi|191173012|ref|ZP_03034546.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           F11]
 gi|193066044|ref|ZP_03047101.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           E22]
 gi|193069930|ref|ZP_03050879.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           E110019]
 gi|194429660|ref|ZP_03062178.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           B171]
 gi|194439042|ref|ZP_03071125.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           101-1]
 gi|195940291|ref|ZP_03085673.1| Holliday junction resolvase [Escherichia coli O157:H7 str. EC4024]
 gi|208810727|ref|ZP_03252603.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           O157:H7 str. EC4206]
 gi|208816719|ref|ZP_03257839.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           O157:H7 str. EC4045]
 gi|208820669|ref|ZP_03260989.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           O157:H7 str. EC4042]
 gi|209397411|ref|YP_002270946.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           O157:H7 str. EC4115]
 gi|209919230|ref|YP_002293314.1| Holliday junction resolvase [Escherichia coli SE11]
 gi|215487076|ref|YP_002329507.1| Holliday junction resolvase [Escherichia coli O127:H6 str.
           E2348/69]
 gi|217328864|ref|ZP_03444945.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           O157:H7 str. TW14588]
 gi|218548576|ref|YP_002382367.1| Holliday junction resolvase [Escherichia fergusonii ATCC 35469]
 gi|218554451|ref|YP_002387364.1| Holliday junction resolvase [Escherichia coli IAI1]
 gi|218558728|ref|YP_002391641.1| Holliday junction resolvase [Escherichia coli S88]
 gi|218689801|ref|YP_002398013.1| Holliday junction resolvase [Escherichia coli ED1a]
 gi|218695429|ref|YP_002403096.1| Holliday junction resolvase [Escherichia coli 55989]
 gi|218699565|ref|YP_002407194.1| Holliday junction resolvase [Escherichia coli IAI39]
 gi|218705364|ref|YP_002412883.1| Holliday junction resolvase [Escherichia coli UMN026]
 gi|227885709|ref|ZP_04003514.1| Holliday junction resolvase [Escherichia coli 83972]
 gi|238901078|ref|YP_002926874.1| component of RuvABC resolvasome, endonuclease [Escherichia coli
           BW2952]
 gi|253773180|ref|YP_003036011.1| Holliday junction resolvase [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|254161923|ref|YP_003045031.1| Holliday junction resolvase [Escherichia coli B str. REL606]
 gi|254793487|ref|YP_003078324.1| Holliday junction resolvase [Escherichia coli O157:H7 str. TW14359]
 gi|256017933|ref|ZP_05431798.1| Holliday junction resolvase [Shigella sp. D9]
 gi|256022471|ref|ZP_05436336.1| Holliday junction resolvase [Escherichia sp. 4_1_40B]
 gi|260844206|ref|YP_003221984.1| endonuclease RuvC [Escherichia coli O103:H2 str. 12009]
 gi|260855803|ref|YP_003229694.1| endonuclease RuvC [Escherichia coli O26:H11 str. 11368]
 gi|260868398|ref|YP_003234800.1| endonuclease RuvC [Escherichia coli O111:H- str. 11128]
 gi|261227636|ref|ZP_05941917.1| Holliday junction resolvase [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261258198|ref|ZP_05950731.1| Holliday junction resolvase [Escherichia coli O157:H7 str. FRIK966]
 gi|291283045|ref|YP_003499863.1| Crossover junction endodeoxyribonuclease ruvC [Escherichia coli
           O55:H7 str. CB9615]
 gi|293405358|ref|ZP_06649350.1| crossover junction endodeoxyribonuclease ruvC [Escherichia coli
           FVEC1412]
 gi|293410175|ref|ZP_06653751.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           B354]
 gi|293415178|ref|ZP_06657821.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           B185]
 gi|293446250|ref|ZP_06662672.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           B088]
 gi|298381000|ref|ZP_06990599.1| crossover junction endodeoxyribonuclease ruvC [Escherichia coli
           FVEC1302]
 gi|300816245|ref|ZP_07096467.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
           107-1]
 gi|300824195|ref|ZP_07104313.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
           119-7]
 gi|300899113|ref|ZP_07117396.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
           198-1]
 gi|300917560|ref|ZP_07134215.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
           115-1]
 gi|300924952|ref|ZP_07140879.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
           182-1]
 gi|300928894|ref|ZP_07144399.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
           187-1]
 gi|300935838|ref|ZP_07150796.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
           21-1]
 gi|300951485|ref|ZP_07165320.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
           116-1]
 gi|300956624|ref|ZP_07168903.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
           175-1]
 gi|300982167|ref|ZP_07175902.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
           200-1]
 gi|300994108|ref|ZP_07180691.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
           45-1]
 gi|301018301|ref|ZP_07182810.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
           69-1]
 gi|301029313|ref|ZP_07192410.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
           196-1]
 gi|301050783|ref|ZP_07197640.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
           185-1]
 gi|301327652|ref|ZP_07220860.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
           78-1]
 gi|301645621|ref|ZP_07245550.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
           146-1]
 gi|306814307|ref|ZP_07448473.1| Holliday junction resolvase [Escherichia coli NC101]
 gi|307138526|ref|ZP_07497882.1| Holliday junction resolvase [Escherichia coli H736]
 gi|307314225|ref|ZP_07593835.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli W]
 gi|309794244|ref|ZP_07688668.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
           145-7]
 gi|312967066|ref|ZP_07781284.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           2362-75]
 gi|312969904|ref|ZP_07784087.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           1827-70]
 gi|331657912|ref|ZP_08358874.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           TA206]
 gi|331663359|ref|ZP_08364269.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           TA143]
 gi|331668558|ref|ZP_08369406.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           TA271]
 gi|331683369|ref|ZP_08383970.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           H299]
 gi|67472394|sp|P0A814|RUVC_ECOLI RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|67472395|sp|P0A815|RUVC_ECOL6 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|67472396|sp|P0A816|RUVC_ECO57 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|90146479|sp|Q322D7|RUVC_SHIBS RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|90146483|sp|Q32H98|RUVC_SHIDS RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|122423490|sp|Q1RAS1|RUVC_ECOUT RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|123343925|sp|Q0TGW9|RUVC_ECOL5 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|167012679|sp|A8A163|RUVC_ECOHS RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|187611416|sp|A1AC24|RUVC_ECOK1 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|189046066|sp|B1J0M5|RUVC_ECOLC RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|226698753|sp|B5YR08|RUVC_ECO5E RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|226698754|sp|B6IBU2|RUVC_ECOSE RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|226725469|sp|B7MBS2|RUVC_ECO45 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|226725470|sp|B7NS55|RUVC_ECO7I RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|226725471|sp|B7M2F4|RUVC_ECO8A RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|226725472|sp|B7NBL4|RUVC_ECOLU RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|226725473|sp|B1LD08|RUVC_ECOSM RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|226725474|sp|B7LPI1|RUVC_ESCF3 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|229484902|sp|B1XHD1|RUVC_ECODH RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|238691720|sp|B2TXL5|RUVC_SHIB3 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|254767471|sp|B7USP0|RUVC_ECO27 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|254767472|sp|B7L7R6|RUVC_ECO55 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|254767473|sp|B7MVZ4|RUVC_ECO81 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|259495686|sp|C4ZQE7|RUVC_ECOBW RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|12515919|gb|AAG56853.1|AE005408_11 Holliday junction nuclease; resolution of structures; repair
           [Escherichia coli O157:H7 str. EDL933]
 gi|42175|emb|CAA42128.1| ruvC [Escherichia coli K-12]
 gi|216653|dbj|BAA01032.1| RuvC [Escherichia coli]
 gi|1736510|dbj|BAA15674.1| component of RuvABC resolvasome, endonuclease [Escherichia coli
           str. K12 substr. W3110]
 gi|1788170|gb|AAC74933.1| component of RuvABC resolvasome, endonuclease [Escherichia coli
           str. K-12 substr. MG1655]
 gi|13362041|dbj|BAB35996.1| Holliday junction nuclease [Escherichia coli O157:H7 str. Sakai]
 gi|81240597|gb|ABB61307.1| Holliday junction nuclease [Shigella dysenteriae Sd197]
 gi|81245113|gb|ABB65821.1| Holliday junction nuclease [Shigella boydii Sb227]
 gi|91072662|gb|ABE07543.1| RuvC protein, Holliday junction nuclease [Escherichia coli UTI89]
 gi|110343573|gb|ABG69810.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           536]
 gi|157067012|gb|ABV06267.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli HS]
 gi|169754720|gb|ACA77419.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           ATCC 8739]
 gi|169889354|gb|ACB03061.1| component of RuvABC resolvasome, endonuclease [Escherichia coli
           str. K-12 substr. DH10B]
 gi|170121668|gb|EDS90599.1| crossover junction endodeoxyribonuclease RuvC [Escherichia albertii
           TW07627]
 gi|170520090|gb|ACB18268.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           SMS-3-5]
 gi|187430389|gb|ACD09663.1| crossover junction endodeoxyribonuclease RuvC [Shigella boydii CDC
           3083-94]
 gi|187768114|gb|EDU31958.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           O157:H7 str. EC4196]
 gi|188017407|gb|EDU55529.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           O157:H7 str. EC4113]
 gi|188491025|gb|EDU66128.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           53638]
 gi|188999434|gb|EDU68420.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           O157:H7 str. EC4076]
 gi|189355185|gb|EDU73604.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           O157:H7 str. EC4401]
 gi|189360291|gb|EDU78710.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           O157:H7 str. EC4486]
 gi|189367402|gb|EDU85818.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           O157:H7 str. EC4501]
 gi|189376053|gb|EDU94469.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           O157:H7 str. EC508]
 gi|190901861|gb|EDV61611.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           B7A]
 gi|190906723|gb|EDV66328.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           F11]
 gi|192926281|gb|EDV80918.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           E22]
 gi|192956830|gb|EDV87284.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           E110019]
 gi|194412302|gb|EDX28606.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           B171]
 gi|194422001|gb|EDX38005.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           101-1]
 gi|208725243|gb|EDZ74950.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           O157:H7 str. EC4206]
 gi|208731062|gb|EDZ79751.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           O157:H7 str. EC4045]
 gi|208740792|gb|EDZ88474.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           O157:H7 str. EC4042]
 gi|209158811|gb|ACI36244.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           O157:H7 str. EC4115]
 gi|209767448|gb|ACI82036.1| Holliday junction nuclease [Escherichia coli]
 gi|209767450|gb|ACI82037.1| Holliday junction nuclease [Escherichia coli]
 gi|209767452|gb|ACI82038.1| Holliday junction nuclease [Escherichia coli]
 gi|209767456|gb|ACI82040.1| Holliday junction nuclease [Escherichia coli]
 gi|209912489|dbj|BAG77563.1| holliday junction nuclease [Escherichia coli SE11]
 gi|215265148|emb|CAS09536.1| RuvC component of RuvABC resolvasome, endonuclease [Escherichia
           coli O127:H6 str. E2348/69]
 gi|217318211|gb|EEC26638.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           O157:H7 str. TW14588]
 gi|218352161|emb|CAU97900.1| component of RuvABC resolvasome, endonuclease [Escherichia coli
           55989]
 gi|218356117|emb|CAQ88734.1| component of RuvABC resolvasome, endonuclease [Escherichia
           fergusonii ATCC 35469]
 gi|218361219|emb|CAQ98803.1| component of RuvABC resolvasome, endonuclease [Escherichia coli
           IAI1]
 gi|218365497|emb|CAR03224.1| component of RuvABC resolvasome, endonuclease [Escherichia coli
           S88]
 gi|218369551|emb|CAR17320.1| component of RuvABC resolvasome, endonuclease [Escherichia coli
           IAI39]
 gi|218427365|emb|CAR08260.2| component of RuvABC resolvasome, endonuclease [Escherichia coli
           ED1a]
 gi|218432461|emb|CAR13354.1| component of RuvABC resolvasome, endonuclease [Escherichia coli
           UMN026]
 gi|222033612|emb|CAP76353.1| Crossover junction endodeoxyribonuclease ruvC [Escherichia coli
           LF82]
 gi|227837282|gb|EEJ47748.1| Holliday junction resolvase [Escherichia coli 83972]
 gi|238860168|gb|ACR62166.1| component of RuvABC resolvasome, endonuclease [Escherichia coli
           BW2952]
 gi|242377584|emb|CAQ32339.1| Holliday junction nuclease; resolution of structures; repair,
           subunit of resolvasome [Escherichia coli BL21(DE3)]
 gi|253324224|gb|ACT28826.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253973824|gb|ACT39495.1| Holliday junction resolvase [Escherichia coli B str. REL606]
 gi|253978018|gb|ACT43688.1| Holliday junction resolvase [Escherichia coli BL21(DE3)]
 gi|254592887|gb|ACT72248.1| component of RuvABC resolvasome, endonuclease [Escherichia coli
           O157:H7 str. TW14359]
 gi|257754452|dbj|BAI25954.1| endonuclease RuvC [Escherichia coli O26:H11 str. 11368]
 gi|257759353|dbj|BAI30850.1| endonuclease RuvC [Escherichia coli O103:H2 str. 12009]
 gi|257764754|dbj|BAI36249.1| endonuclease RuvC [Escherichia coli O111:H- str. 11128]
 gi|260449014|gb|ACX39436.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           DH1]
 gi|281178933|dbj|BAI55263.1| holliday junction nuclease [Escherichia coli SE15]
 gi|284921783|emb|CBG34856.1| crossover junction endodeoxyribonuclease [Escherichia coli 042]
 gi|290762918|gb|ADD56879.1| Crossover junction endodeoxyribonuclease ruvC [Escherichia coli
           O55:H7 str. CB9615]
 gi|291323080|gb|EFE62508.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           B088]
 gi|291427566|gb|EFF00593.1| crossover junction endodeoxyribonuclease ruvC [Escherichia coli
           FVEC1412]
 gi|291432826|gb|EFF05805.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           B185]
 gi|291470643|gb|EFF13127.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           B354]
 gi|294489901|gb|ADE88657.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           IHE3034]
 gi|298278442|gb|EFI19956.1| crossover junction endodeoxyribonuclease ruvC [Escherichia coli
           FVEC1302]
 gi|299877739|gb|EFI85950.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
           196-1]
 gi|300297538|gb|EFJ53923.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
           185-1]
 gi|300307323|gb|EFJ61843.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
           200-1]
 gi|300316606|gb|EFJ66390.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
           175-1]
 gi|300357270|gb|EFJ73140.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
           198-1]
 gi|300399737|gb|EFJ83275.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
           69-1]
 gi|300406370|gb|EFJ89908.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
           45-1]
 gi|300415214|gb|EFJ98524.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
           115-1]
 gi|300418888|gb|EFK02199.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
           182-1]
 gi|300449235|gb|EFK12855.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
           116-1]
 gi|300458950|gb|EFK22443.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
           21-1]
 gi|300463122|gb|EFK26615.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
           187-1]
 gi|300523266|gb|EFK44335.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
           119-7]
 gi|300530935|gb|EFK51997.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
           107-1]
 gi|300845800|gb|EFK73560.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
           78-1]
 gi|301076153|gb|EFK90959.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
           146-1]
 gi|305852466|gb|EFM52917.1| Holliday junction resolvase [Escherichia coli NC101]
 gi|306906194|gb|EFN36712.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli W]
 gi|307553882|gb|ADN46657.1| holliday junction nuclease [Escherichia coli ABU 83972]
 gi|307626654|gb|ADN70958.1| Holliday junction resolvase [Escherichia coli UM146]
 gi|308122149|gb|EFO59411.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
           145-7]
 gi|309702087|emb|CBJ01401.1| crossover junction endodeoxyribonuclease [Escherichia coli ETEC
           H10407]
 gi|310338189|gb|EFQ03278.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           1827-70]
 gi|312288530|gb|EFR16432.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           2362-75]
 gi|312946463|gb|ADR27290.1| Holliday junction resolvase [Escherichia coli O83:H1 str. NRG 857C]
 gi|315061169|gb|ADT75496.1| component of RuvABC resolvasome, endonuclease [Escherichia coli W]
 gi|315136506|dbj|BAJ43665.1| crossover junction endodeoxyribonuclease ruvC [Escherichia coli
           DH1]
 gi|315286568|gb|EFU46003.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
           110-3]
 gi|315290342|gb|EFU49718.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
           153-1]
 gi|315296554|gb|EFU55851.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
           16-3]
 gi|320186108|gb|EFW60852.1| Crossover junction endodeoxyribonuclease RuvC [Shigella flexneri
           CDC 796-83]
 gi|320188564|gb|EFW63226.1| Crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           O157:H7 str. EC1212]
 gi|320194421|gb|EFW69052.1| Crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           WV_060327]
 gi|320198057|gb|EFW72665.1| Crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           EC4100B]
 gi|320641717|gb|EFX11105.1| Holliday junction resolvase [Escherichia coli O157:H7 str. G5101]
 gi|320647077|gb|EFX15910.1| Holliday junction resolvase [Escherichia coli O157:H- str. 493-89]
 gi|320652360|gb|EFX20658.1| Holliday junction resolvase [Escherichia coli O157:H- str. H 2687]
 gi|320657961|gb|EFX25723.1| Holliday junction resolvase [Escherichia coli O55:H7 str. 3256-97
           TW 07815]
 gi|320658534|gb|EFX26228.1| Holliday junction resolvase [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320668432|gb|EFX35259.1| Holliday junction resolvase [Escherichia coli O157:H7 str. LSU-61]
 gi|323152648|gb|EFZ38924.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           EPECa14]
 gi|323158652|gb|EFZ44666.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           E128010]
 gi|323174756|gb|EFZ60372.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           LT-68]
 gi|323186361|gb|EFZ71711.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           1357]
 gi|323186871|gb|EFZ72190.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           RN587/1]
 gi|323378254|gb|ADX50522.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           KO11]
 gi|323937121|gb|EGB33401.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           E1520]
 gi|323940469|gb|EGB36660.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           E482]
 gi|323948251|gb|EGB44239.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           H120]
 gi|323952365|gb|EGB48238.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           H252]
 gi|323956494|gb|EGB52236.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           H263]
 gi|323961918|gb|EGB57517.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           H489]
 gi|323968285|gb|EGB63692.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           M863]
 gi|323972629|gb|EGB67832.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           TA007]
 gi|323977952|gb|EGB73038.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           TW10509]
 gi|324007230|gb|EGB76449.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
           57-2]
 gi|324012868|gb|EGB82087.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
           60-1]
 gi|324018006|gb|EGB87225.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
           117-3]
 gi|324113599|gb|EGC07574.1| crossover junction endodeoxyribonuclease RuvC [Escherichia
           fergusonii B253]
 gi|324118923|gb|EGC12812.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           E1167]
 gi|326342243|gb|EGD66024.1| Crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           O157:H7 str. 1044]
 gi|326343793|gb|EGD67555.1| Crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           O157:H7 str. 1125]
 gi|327252992|gb|EGE64646.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           STEC_7v]
 gi|330911673|gb|EGH40183.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           AA86]
 gi|331056160|gb|EGI28169.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           TA206]
 gi|331059158|gb|EGI31135.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           TA143]
 gi|331063752|gb|EGI35663.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           TA271]
 gi|331079584|gb|EGI50781.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           H299]
 gi|332096544|gb|EGJ01538.1| crossover junction endodeoxyribonuclease RuvC [Shigella boydii
           3594-74]
 gi|332343589|gb|AEE56923.1| holliday junction endodeoxyribonuclease RuvC [Escherichia coli
           UMNK88]
          Length = 173

 Score =  199 bits (508), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 53/135 (39%), Positives = 84/135 (62%), Gaps = 1/135 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I + V   L  RL  +Y G+T++I  ++P+
Sbjct: 4   ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR +AI++     +PV EYA   +K+ V+G+G  +K Q+
Sbjct: 63  YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 122

Query: 127 HMMLKMLMPESFFKG 141
             M++ L+       
Sbjct: 123 QHMVRTLLKLPANPQ 137


>gi|218513496|ref|ZP_03510336.1| Holliday junction resolvase [Rhizobium etli 8C-3]
          Length = 145

 Score =  199 bits (508), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 99/145 (68%), Positives = 120/145 (82%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M+ +IRI+GIDPGLRRTGWGI+D  G++L FV+SGT+ S     LA RLCQL++GL +V+
Sbjct: 1   MQNTIRIVGIDPGLRRTGWGIIDTLGNSLRFVASGTVTSDGDMDLASRLCQLHDGLAEVV 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             ++P+EAAVEQ FVNKDAVATLKLGQAR IA+L PA A + VSEYAPN +KKAVIGVGH
Sbjct: 61  HAYKPDEAAVEQTFVNKDAVATLKLGQARGIAMLVPARAGLHVSEYAPNAVKKAVIGVGH 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAA 145
           G+K QIHMMLK+LMP+  FKG DAA
Sbjct: 121 GEKHQIHMMLKILMPKVEFKGDDAA 145


>gi|332090040|gb|EGI95140.1| crossover junction endodeoxyribonuclease RuvC [Shigella boydii
           5216-82]
          Length = 173

 Score =  199 bits (508), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 52/135 (38%), Positives = 84/135 (62%), Gaps = 1/135 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I + V   L  RL  +Y G+T++I  ++P+
Sbjct: 4   ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K++ + LKLGQAR +AI++     +PV EYA   +K+ V+G+G  +K Q+
Sbjct: 63  YFAIEQVFMAKNSDSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 122

Query: 127 HMMLKMLMPESFFKG 141
             M++ L+       
Sbjct: 123 QHMVRTLLKLPANPQ 137


>gi|169824514|ref|YP_001692125.1| crossover junction endodeoxyribonuclease [Finegoldia magna ATCC
           29328]
 gi|238687749|sp|B0S1J5|RUVC_FINM2 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|167831319|dbj|BAG08235.1| crossover junction endodeoxyribonuclease [Finegoldia magna ATCC
           29328]
          Length = 164

 Score =  199 bits (508), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 42/138 (30%), Positives = 77/138 (55%), Gaps = 1/138 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPG+   G+ I+D   + +  +  G I +  + +L  RL  +Y+ +  +I  ++
Sbjct: 1   MRVLGIDPGIAIVGYSILDYDNNKIKCLEYGCITTSSKSALPDRLSFIYQEMNKIIDEFQ 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P++ A E++F NK+    + + QAR + ILS     + + EY P  IK+AV+G G  DK+
Sbjct: 61  PDDCAFEELFFNKNVKTAITVSQARGVEILSCINKDLRLYEYTPLQIKQAVVGYGRADKR 120

Query: 125 QIHMMLKMLMP-ESFFKG 141
           Q+   +K ++      K 
Sbjct: 121 QVQETVKTILKFNEIPKP 138


>gi|332716454|ref|YP_004443920.1| crossover junction endodeoxyribonuclease RuvC [Agrobacterium sp.
           H13-3]
 gi|325063139|gb|ADY66829.1| crossover junction endodeoxyribonuclease RuvC [Agrobacterium sp.
           H13-3]
          Length = 170

 Score =  199 bits (508), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 108/159 (67%), Positives = 135/159 (84%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M+K+IRIIGIDPGLRRTGWG+++  G++L FV+SGT+ S     LA RLCQL++GL D +
Sbjct: 1   MQKTIRIIGIDPGLRRTGWGVIETFGNSLRFVASGTVTSDGDMDLASRLCQLHDGLADTV 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
            +++P+EAAVEQ FVNKDAVATLKLGQAR IA+L PA A +PV EYAPN +KKAVIGVGH
Sbjct: 61  HSYQPDEAAVEQTFVNKDAVATLKLGQARGIAMLVPARAGLPVFEYAPNAVKKAVIGVGH 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHAN 159
           G+K+QIHMMLK+LMP++ FKG DAADALAIA+CHA++  
Sbjct: 121 GEKQQIHMMLKILMPKAEFKGNDAADALAIAICHAHNRG 159


>gi|154252562|ref|YP_001413386.1| crossover junction endodeoxyribonuclease RuvC [Parvibaculum
           lavamentivorans DS-1]
 gi|187611454|sp|A7HUZ6|RUVC_PARL1 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|154156512|gb|ABS63729.1| crossover junction endodeoxyribonuclease RuvC [Parvibaculum
           lavamentivorans DS-1]
          Length = 175

 Score =  199 bits (508), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 83/161 (51%), Positives = 112/161 (69%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M  S+  +GIDPGL  TGWG++ ++G  L  +++GTI S  R SLA RL Q+  GL  VI
Sbjct: 1   MPVSLTYLGIDPGLTATGWGVIGISGSRLTHIANGTITSNARLSLAERLVQIEAGLVQVI 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
               P+ AAVEQ FV +DA A LKLGQARAIA+L  A A + V+EYAPN +KK+V+G GH
Sbjct: 61  HEHAPDAAAVEQAFVARDASAALKLGQARAIALLVSARAGLAVAEYAPNHVKKSVVGAGH 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSG 161
            DK QI +M++ML+P +    + AADALA+A+CHA+  ++ 
Sbjct: 121 ADKSQIRLMVEMLLPGAKAGSEHAADALALAICHAHSGSAN 161


>gi|268324526|emb|CBH38114.1| crossover junction endodeoxyribonuclease RuvC [uncultured archaeon]
          Length = 162

 Score =  199 bits (508), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 56/157 (35%), Positives = 86/157 (54%), Gaps = 1/157 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R+IGIDPG  RTGWG+V++    L  +  G + +   QS A RL ++Y  L  VIK   
Sbjct: 1   MRVIGIDPGTARTGWGVVELNNGRLKPIDFGYVKTTTAQSNAERLKKIYYDLLAVIKAVT 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  A+E +F N +    L +GQAR + +L+ A++ IP  EY  + +K  + G G   K 
Sbjct: 61  PDVMAIEMIFFNTNVKTALSVGQARGVCLLAAAISDIPAYEYNTSEVKSIITGYGRATKS 120

Query: 125 QIHM-MLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           ++   +++ L  E   K  D  DALAIA  H    ++
Sbjct: 121 EVATSVMEKLKLEEMPKPDDVTDALAIAATHIIRNSN 157


>gi|157371018|ref|YP_001479007.1| Holliday junction resolvase [Serratia proteamaculans 568]
 gi|167012682|sp|A8GFI9|RUVC_SERP5 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|157322782|gb|ABV41879.1| crossover junction endodeoxyribonuclease RuvC [Serratia
           proteamaculans 568]
          Length = 173

 Score =  199 bits (508), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 51/135 (37%), Positives = 83/135 (61%), Gaps = 1/135 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L +V+SG I + V   +  RL  +Y G++++I  ++P+
Sbjct: 4   ILGIDPGSRVTGYGLIRQQGRQLTYVASGCIRTVVD-DMPTRLKLIYAGVSEIITQFKPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+  + LKLGQAR +AI++     + V EYA   +K+ V+G G  +K Q+
Sbjct: 63  FFAIEQVFMAKNPDSALKLGQARGVAIVAAVNQDLEVFEYAARQVKQTVVGTGAAEKAQV 122

Query: 127 HMMLKMLMPESFFKG 141
             M++ L+  S    
Sbjct: 123 QHMVRSLLKLSANPQ 137


>gi|317048521|ref|YP_004116169.1| crossover junction endodeoxyribonuclease RuvC [Pantoea sp. At-9b]
 gi|316950138|gb|ADU69613.1| crossover junction endodeoxyribonuclease RuvC [Pantoea sp. At-9b]
          Length = 175

 Score =  199 bits (508), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 52/135 (38%), Positives = 81/135 (60%), Gaps = 1/135 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I + V   L  RL  +Y G++++I  + P+
Sbjct: 4   ILGIDPGSRVTGYGVIRQTGRQLSYLGSGCIRTNV-TDLPSRLKLIYAGVSEIITQFSPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR  AI++     +PV EYA   +K+ V G+G  +K Q+
Sbjct: 63  FFAIEQVFMAKNADSALKLGQARGAAIVAAVNLDLPVFEYAARQVKQTVTGIGSAEKSQV 122

Query: 127 HMMLKMLMPESFFKG 141
             M++ L+       
Sbjct: 123 QHMVRTLLKLPANPQ 137


>gi|326798986|ref|YP_004316805.1| Crossover junction endodeoxyribonuclease ruvC [Sphingobacterium sp.
           21]
 gi|326549750|gb|ADZ78135.1| Crossover junction endodeoxyribonuclease ruvC [Sphingobacterium sp.
           21]
          Length = 188

 Score =  199 bits (507), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 56/158 (35%), Positives = 90/158 (56%), Gaps = 1/158 (0%)

Query: 3   KSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
           K   I+GIDPG +  G+G++   G  L  +S G I     ++ A +L +++E  T +I  
Sbjct: 7   KERVILGIDPGTKVMGYGLIQEKGKQLSLISLGIIKLDHLENQALKLQRIFEKTTSLIDQ 66

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
           + P+  A+E  F  K+    LKLG+A+ +A+ +    +I ++EYAP  IK++V G G   
Sbjct: 67  YHPDCMALEDPFYGKNIQVILKLGRAQGVAMAAALAKKIEIAEYAPRKIKQSVTGNGSAS 126

Query: 123 KKQIHMMLKMLMP-ESFFKGKDAADALAIAVCHAYHAN 159
           K+Q+  MLK L+  +   +  DA D LA+AVCHA+   
Sbjct: 127 KEQVASMLKNLLNFKESPQFFDATDGLAVAVCHAFQGR 164


>gi|58584954|ref|YP_198527.1| Holliday junction resolvasome, endonuclease subunit, RuvC
           [Wolbachia endosymbiont strain TRS of Brugia malayi]
 gi|75497659|sp|Q5GRT9|RUVC_WOLTR RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|58419270|gb|AAW71285.1| Holliday junction resolvasome, endonuclease subunit, RuvC
           [Wolbachia endosymbiont strain TRS of Brugia malayi]
          Length = 162

 Score =  199 bits (507), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 66/160 (41%), Positives = 101/160 (63%), Gaps = 1/160 (0%)

Query: 6   RIIGIDPGLRRTGWGIVDVAGD-NLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           RIIG+DPG+ +TGW I+D+    N+ F+ SGTI +  +  +  RL  ++E L  VI  + 
Sbjct: 3   RIIGLDPGMSKTGWAIIDMDERSNIEFLGSGTISTGNKLGMGERLHVIFEQLKKVISLYS 62

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P EAA+E++FVNK+  ++L LG AR I IL   +  + ++EY  N +KK++ G GH DK 
Sbjct: 63  PSEAAIEKIFVNKNPKSSLTLGYARGIVILVLEITELTMNEYDTNYVKKSITGNGHADKD 122

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYK 164
           Q+  M+K ++     K   AADALA+A+CH Y  +S + +
Sbjct: 123 QVIFMVKQIIKNLNIKCHHAADALAVAICHVYTKSSYFVR 162


>gi|317491786|ref|ZP_07950221.1| crossover junction endodeoxyribonuclease RuvC [Enterobacteriaceae
           bacterium 9_2_54FAA]
 gi|316920220|gb|EFV41544.1| crossover junction endodeoxyribonuclease RuvC [Enterobacteriaceae
           bacterium 9_2_54FAA]
          Length = 173

 Score =  199 bits (507), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 63/156 (40%), Positives = 97/156 (62%), Gaps = 1/156 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I + V   L  RL  +Y G++++I  ++P+
Sbjct: 4   ILGIDPGSRITGYGVIRQVGRKLEYLGSGCIRTSVD-DLPTRLKLVYAGVSEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR  AI++     +PV EYA   IK+ V+G G  +K Q+
Sbjct: 63  IFAIEQVFMAKNADSALKLGQARGAAIVAAVNVDLPVFEYAARQIKQTVVGTGAAEKAQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGY 162
             M++ L+  S     DAADALA+A+ H + + +  
Sbjct: 123 QHMVRSLLKLSANPQADAADALAVAITHCHVSQNAL 158


>gi|999741|pdb|1HJR|A Chain A, Atomic Structure Of The Ruvc Resolvase: A Holliday
           Junction- Specific Endonuclease From E. Coli
 gi|999742|pdb|1HJR|B Chain B, Atomic Structure Of The Ruvc Resolvase: A Holliday
           Junction- Specific Endonuclease From E. Coli
 gi|999743|pdb|1HJR|C Chain C, Atomic Structure Of The Ruvc Resolvase: A Holliday
           Junction- Specific Endonuclease From E. Coli
 gi|999744|pdb|1HJR|D Chain D, Atomic Structure Of The Ruvc Resolvase: A Holliday
           Junction- Specific Endonuclease From E. Coli
          Length = 158

 Score =  199 bits (507), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 53/135 (39%), Positives = 84/135 (62%), Gaps = 1/135 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I + V   L  RL  +Y G+T++I  ++P+
Sbjct: 3   ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQPD 61

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR +AI++     +PV EYA   +K+ V+G+G  +K Q+
Sbjct: 62  YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 121

Query: 127 HMMLKMLMPESFFKG 141
             M++ L+       
Sbjct: 122 QHMVRTLLKLPANPQ 136


>gi|194433925|ref|ZP_03066197.1| crossover junction endodeoxyribonuclease RuvC [Shigella dysenteriae
           1012]
 gi|194417797|gb|EDX33894.1| crossover junction endodeoxyribonuclease RuvC [Shigella dysenteriae
           1012]
          Length = 174

 Score =  199 bits (507), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 54/135 (40%), Positives = 85/135 (62%), Gaps = 1/135 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I + V   L FRL  +Y G+T++I  ++P+
Sbjct: 5   ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPFRLKLIYAGVTEIITQFQPD 63

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR +AI++     +PV EYA   +K+ V+G+G  +K Q+
Sbjct: 64  YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 123

Query: 127 HMMLKMLMPESFFKG 141
             M++ L+       
Sbjct: 124 QHMVRTLLKLPANPQ 138


>gi|26248129|ref|NP_754169.1| Holliday junction resolvase [Escherichia coli CFT073]
 gi|117624015|ref|YP_852928.1| Holliday junction resolvase [Escherichia coli APEC O1]
 gi|237705817|ref|ZP_04536298.1| holliday junction resolvase [Escherichia sp. 3_2_53FAA]
 gi|331642477|ref|ZP_08343612.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           H736]
 gi|331647460|ref|ZP_08348552.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           M605]
 gi|331653272|ref|ZP_08354277.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           M718]
 gi|331673393|ref|ZP_08374161.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           TA280]
 gi|331677744|ref|ZP_08378419.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           H591]
 gi|332278967|ref|ZP_08391380.1| holliday junction resolvase [Shigella sp. D9]
 gi|26108532|gb|AAN80734.1|AE016761_309 Crossover junction endodeoxyribonuclease ruvC [Escherichia coli
           CFT073]
 gi|115513139|gb|ABJ01214.1| crossover junction endodeoxyribonuclease [Escherichia coli APEC O1]
 gi|195182925|dbj|BAG66493.1| Holliday junction nuclease [Escherichia coli O111:H-]
 gi|226900574|gb|EEH86833.1| holliday junction resolvase [Escherichia sp. 3_2_53FAA]
 gi|325496994|gb|EGC94853.1| Holliday junction resolvase [Escherichia fergusonii ECD227]
 gi|331039275|gb|EGI11495.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           H736]
 gi|331043184|gb|EGI15322.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           M605]
 gi|331049370|gb|EGI21442.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           M718]
 gi|331069591|gb|EGI40978.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           TA280]
 gi|331074204|gb|EGI45524.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           H591]
 gi|332101319|gb|EGJ04665.1| holliday junction resolvase [Shigella sp. D9]
          Length = 174

 Score =  199 bits (507), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 53/135 (39%), Positives = 84/135 (62%), Gaps = 1/135 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I + V   L  RL  +Y G+T++I  ++P+
Sbjct: 5   ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQPD 63

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR +AI++     +PV EYA   +K+ V+G+G  +K Q+
Sbjct: 64  YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 123

Query: 127 HMMLKMLMPESFFKG 141
             M++ L+       
Sbjct: 124 QHMVRTLLKLPANPQ 138


>gi|209550793|ref|YP_002282710.1| Holliday junction resolvase [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|226698762|sp|B5ZP76|RUVC_RHILW RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|209536549|gb|ACI56484.1| crossover junction endodeoxyribonuclease RuvC [Rhizobium
           leguminosarum bv. trifolii WSM2304]
          Length = 169

 Score =  199 bits (507), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 110/166 (66%), Positives = 135/166 (81%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M+ +IRI+GIDPGLRRTGWGI+D  G++L FV+SGT+ S     LA RLCQL++GL +V+
Sbjct: 1   MQNTIRIVGIDPGLRRTGWGIIDTLGNSLRFVASGTVTSDGDMDLASRLCQLHDGLAEVV 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             ++P+EAAVEQ FVNKDAVATLKLGQAR IA+L PA A + VSEYAPN +KKAVIGVGH
Sbjct: 61  HTYKPDEAAVEQTFVNKDAVATLKLGQARGIAMLVPARAGLRVSEYAPNAVKKAVIGVGH 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
           G+K QIHMMLK+LMP+  FKG DAADALAIA+CHA++  S   + A
Sbjct: 121 GEKHQIHMMLKILMPKVEFKGDDAADALAIAICHAHNRGSNRMREA 166


>gi|118588335|ref|ZP_01545744.1| Holliday junction resolvase [Stappia aggregata IAM 12614]
 gi|118439041|gb|EAV45673.1| Holliday junction resolvase [Stappia aggregata IAM 12614]
          Length = 234

 Score =  199 bits (507), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 94/167 (56%), Positives = 130/167 (77%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M  +IR++GIDPGLRRTGWG+++  G+ L F++SGT+ S  ++SLA RL +L++GL++V+
Sbjct: 64  MTHAIRLLGIDPGLRRTGWGMIEATGNRLSFIASGTVTSDNKKSLAERLVELHDGLSEVV 123

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
           +   P EAAVE  FVNKDA ATLKLGQAR IA+L P+LA +PV+EYAPN +KK V+G GH
Sbjct: 124 RRHDPAEAAVEHTFVNKDAGATLKLGQARGIALLVPSLAGLPVAEYAPNLVKKTVVGTGH 183

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
            +K+QI  M+K+LMP + F   DAADALAIA+CHA H ++   ++A+
Sbjct: 184 AEKEQIRAMVKILMPRATFNSDDAADALAIAICHAQHRSNSTARLAA 230


>gi|270262224|ref|ZP_06190496.1| crossover junction endodeoxyribonuclease ruvC [Serratia odorifera
           4Rx13]
 gi|270044100|gb|EFA17192.1| crossover junction endodeoxyribonuclease ruvC [Serratia odorifera
           4Rx13]
          Length = 173

 Score =  199 bits (507), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 50/135 (37%), Positives = 83/135 (61%), Gaps = 1/135 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L +++SG I + V   +  RL  +Y G++++I  ++P+
Sbjct: 4   ILGIDPGSRVTGYGLIRQQGRQLSYIASGCIRTVVD-DMPTRLKLIYAGVSEIITQFKPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+  + LKLGQAR +AI++     + V EYA   +K+ V+G G  +K Q+
Sbjct: 63  FFAIEQVFMAKNPDSALKLGQARGVAIVAAVNQDLEVFEYAARQVKQTVVGTGAAEKAQV 122

Query: 127 HMMLKMLMPESFFKG 141
             M++ L+  S    
Sbjct: 123 QHMVRSLLKLSANPQ 137


>gi|225011446|ref|ZP_03701884.1| crossover junction endodeoxyribonuclease RuvC [Flavobacteria
           bacterium MS024-2A]
 gi|225003949|gb|EEG41921.1| crossover junction endodeoxyribonuclease RuvC [Flavobacteria
           bacterium MS024-2A]
          Length = 184

 Score =  199 bits (507), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 49/161 (30%), Positives = 90/161 (55%), Gaps = 1/161 (0%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M+    I+GIDPG    G+G++    +++  +    +      +   +L  +++   ++I
Sbjct: 1   MQNEQIILGIDPGTTIMGFGLIKTTKNSMELIQMHELHLKKYDNHFMKLGIIFKRTIELI 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
           + + P+E A+E  F  K+  + LKLG+A+ +A+ +     IP++EY+P  IK A+ G G+
Sbjct: 61  EEYHPDELAIEAPFFGKNVQSMLKLGRAQGVAMAAGLSREIPITEYSPKKIKMAITGNGN 120

Query: 121 GDKKQIHMMLKMLMP-ESFFKGKDAADALAIAVCHAYHANS 160
             K+Q+  ML+ L+  ++  K  DA D LA AVCH Y+  +
Sbjct: 121 ASKEQVAKMLQSLLKIKTLPKNLDATDGLAAAVCHYYNQGT 161


>gi|251789859|ref|YP_003004580.1| Holliday junction resolvase [Dickeya zeae Ech1591]
 gi|247538480|gb|ACT07101.1| crossover junction endodeoxyribonuclease RuvC [Dickeya zeae
           Ech1591]
          Length = 173

 Score =  199 bits (507), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 53/135 (39%), Positives = 82/135 (60%), Gaps = 1/135 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+GIV   G  + ++ SG I + V   L  RL  +Y G++++I  ++P+
Sbjct: 4   ILGIDPGSRVTGYGIVRQQGRQISYLGSGCIRTAVD-DLPTRLKLIYAGVSEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ ++A + LKLGQAR  AI++     +PV EYA   +K+ V+G G  +K Q+
Sbjct: 63  FFAIEQVFMARNADSALKLGQARGAAIVAAVNQSLPVFEYAARQVKQTVVGTGAAEKSQV 122

Query: 127 HMMLKMLMPESFFKG 141
             M+K L+       
Sbjct: 123 QHMVKTLLKLPASPQ 137


>gi|15966504|ref|NP_386857.1| Holliday junction resolvase [Sinorhizobium meliloti 1021]
 gi|307300459|ref|ZP_07580239.1| crossover junction endodeoxyribonuclease RuvC [Sinorhizobium
           meliloti BL225C]
 gi|307318324|ref|ZP_07597759.1| crossover junction endodeoxyribonuclease RuvC [Sinorhizobium
           meliloti AK83]
 gi|20978749|sp|Q92M90|RUVC_RHIME RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|15075775|emb|CAC47330.1| Probable holliday junction endodeoxyribonuclease [Sinorhizobium
           meliloti 1021]
 gi|306896006|gb|EFN26757.1| crossover junction endodeoxyribonuclease RuvC [Sinorhizobium
           meliloti AK83]
 gi|306904625|gb|EFN35209.1| crossover junction endodeoxyribonuclease RuvC [Sinorhizobium
           meliloti BL225C]
          Length = 170

 Score =  199 bits (507), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 106/167 (63%), Positives = 137/167 (82%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M+ +IRIIGIDPGLRRTGWG+++  G++L FV+SGT+ S     LA RLCQL++GL +V+
Sbjct: 1   MQNTIRIIGIDPGLRRTGWGVIETLGNSLRFVASGTVTSDGELDLASRLCQLHDGLAEVV 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             ++P EAAVEQ FVNKDA ATLKLGQAR IA+L PA A + V+EYAPN +KKAVIGVGH
Sbjct: 61  HGYQPHEAAVEQTFVNKDATATLKLGQARGIAMLVPARAGLRVAEYAPNAVKKAVIGVGH 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
           G+K+QIHMMLK+LMP++ FKG DAADALAIA+CHA++  +   ++A+
Sbjct: 121 GEKQQIHMMLKVLMPKAEFKGNDAADALAIAICHAHNRQAVTSRLAA 167


>gi|300723090|ref|YP_003712388.1| Holliday junction nuclease [Xenorhabdus nematophila ATCC 19061]
 gi|297629605|emb|CBJ90208.1| Holliday junction nuclease [Xenorhabdus nematophila ATCC 19061]
          Length = 173

 Score =  199 bits (507), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 55/135 (40%), Positives = 85/135 (62%), Gaps = 1/135 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I + V   L  RL ++Y G+T++I  ++P+
Sbjct: 4   ILGIDPGSRVTGYGVIRQQGRQLIYLGSGCIRTKVD-DLPSRLQRIYAGITEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+  + LKLGQAR +AI++ A   IPV EYA   +K+ V+G G  +K QI
Sbjct: 63  AFAIEQVFMAKNPDSALKLGQARGVAIVAAANQSIPVFEYAARQVKQTVVGTGAAEKSQI 122

Query: 127 HMMLKMLMPESFFKG 141
             M++ ++  S    
Sbjct: 123 QHMVRSMLKLSANPQ 137


>gi|332292054|ref|YP_004430663.1| crossover junction endodeoxyribonuclease RuvC [Krokinobacter
           diaphorus 4H-3-7-5]
 gi|332170140|gb|AEE19395.1| crossover junction endodeoxyribonuclease RuvC [Krokinobacter
           diaphorus 4H-3-7-5]
          Length = 184

 Score =  199 bits (507), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 57/169 (33%), Positives = 89/169 (52%), Gaps = 3/169 (1%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M     I+GIDPG    G+G++ V G  + F+    ++         +L  ++E    +I
Sbjct: 1   MADERIILGIDPGTTIMGFGLIKVVGKKMEFMLLNELLLQKYSDPYVKLKLIFERTIQLI 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             + P+E A+E  F  K+  + LKLG+A+ +A+ +     IP++EY P  IK AV G G+
Sbjct: 61  DTYHPDEIAIEAPFFGKNVQSMLKLGRAQGVAMAAGLSREIPITEYLPKKIKMAVTGNGN 120

Query: 121 GDKKQIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
             K+Q+  ML+ L+   +  K  D+ D LA AVCH Y  NSG  +I   
Sbjct: 121 ASKEQVARMLQSLLKLKTLPKNLDSTDGLAAAVCHYY--NSGKVEIGKS 167


>gi|166712991|ref|ZP_02244198.1| Holliday junction resolvase [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 174

 Score =  199 bits (507), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 62/157 (39%), Positives = 94/157 (59%), Gaps = 1/157 (0%)

Query: 6   RIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           RI+GIDPG +RTG GI+D+  G     V    ++       + RL +L  GL ++I+ +R
Sbjct: 3   RILGIDPGSQRTGIGIIDIDEGGRSRHVHHAPLILLGEGDFSQRLKRLLHGLGELIETYR 62

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+E A+E+VF+ K A + LKLGQAR  AI +  +  +PV EYA   +K A++G G  DK 
Sbjct: 63  PDEVAIEKVFMGKSAASALKLGQARGAAICAVVMRDLPVHEYAATEVKLALVGKGGADKV 122

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSG 161
           Q+  M+ +++        DAADALA+A+ HA+   + 
Sbjct: 123 QVQHMVGIMLNLKGKLQPDAADALAVAITHAHVRATA 159


>gi|332982457|ref|YP_004463898.1| crossover junction endodeoxyribonuclease RuvC [Mahella
           australiensis 50-1 BON]
 gi|332700135|gb|AEE97076.1| crossover junction endodeoxyribonuclease RuvC [Mahella
           australiensis 50-1 BON]
          Length = 162

 Score =  199 bits (506), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 48/136 (35%), Positives = 75/136 (55%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + ++GIDPGL   G+G VD   + L  +  G + +     L  RL  +Y+ +T +I+ + 
Sbjct: 1   MIVLGIDPGLATLGYGAVDYDKNKLKLIDYGVVTTQPDMPLPQRLKSIYDDVTALIERYE 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P   AVE++F NK+A   L +G AR +AIL+ A   +PV EY P  IK+ + G G   K 
Sbjct: 61  PRACAVEELFFNKNAKTALTIGHARGVAILAAANNAVPVYEYTPLQIKQGITGYGMAQKL 120

Query: 125 QIHMMLKMLMPESFFK 140
           Q+  M+K+L+      
Sbjct: 121 QVQRMVKLLLSMDDIP 136


>gi|328953689|ref|YP_004371023.1| Crossover junction endodeoxyribonuclease ruvC [Desulfobacca
           acetoxidans DSM 11109]
 gi|328454013|gb|AEB09842.1| Crossover junction endodeoxyribonuclease ruvC [Desulfobacca
           acetoxidans DSM 11109]
          Length = 167

 Score =  199 bits (506), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 59/153 (38%), Positives = 96/153 (62%), Gaps = 1/153 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+G+DPG R TG+G++   G++L  + SG I    + S + RL ++Y+ L  +I  + PE
Sbjct: 5   ILGVDPGSRATGYGLIAATGESLLHLESGFIALPAQLSHSQRLARIYQRLESLISRYNPE 64

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             AVE VF+  +  + LKLGQ R + +L+   A IPV EY+P T+KKA++G G   K Q+
Sbjct: 65  ALAVEAVFLAHNVQSALKLGQVRGVVLLAAGQADIPVFEYSPLTLKKAIVGYGQATKTQV 124

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHAN 159
            +M++ L+  +     + ADALA+++CH +H+ 
Sbjct: 125 LLMVENLLGLT-LNNHNTADALALSLCHHFHSR 156


>gi|333004716|gb|EGK24239.1| crossover junction endodeoxyribonuclease RuvC [Shigella flexneri
           K-272]
 gi|333018437|gb|EGK37735.1| crossover junction endodeoxyribonuclease RuvC [Shigella flexneri
           K-227]
          Length = 173

 Score =  199 bits (506), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 53/135 (39%), Positives = 84/135 (62%), Gaps = 1/135 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I + V   L  RL  +Y G+T++I  ++P+
Sbjct: 4   ILGIDPGSRVTGYGVISQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR +AI++     +PV EYA   +K+ V+G+G  +K Q+
Sbjct: 63  YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGMGSAEKSQV 122

Query: 127 HMMLKMLMPESFFKG 141
             M++ L+       
Sbjct: 123 QHMVRTLLKLPANPQ 137


>gi|37526026|ref|NP_929370.1| Holliday junction resolvase [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|44888381|sp|Q7N549|RUVC_PHOLL RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|36785456|emb|CAE14403.1| crossover junction endodeoxyribonuclease (Holliday junction
           nuclease RuvC) (Holliday junction resolvase RuvC)
           [Photorhabdus luminescens subsp. laumondii TTO1]
          Length = 173

 Score =  199 bits (506), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 54/136 (39%), Positives = 85/136 (62%), Gaps = 1/136 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G +L ++ SG I + V   L  RL ++Y G+ ++I  ++P+
Sbjct: 4   ILGIDPGSRVTGYGVIRQQGRHLSYLGSGCIRTKVD-DLPNRLQRIYAGILEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR +AIL+     IPV EYA   +K+ V+G G  +K Q+
Sbjct: 63  AFAIEQVFMAKNADSALKLGQARGVAILAAVNQSIPVFEYAARQVKQTVVGTGAAEKSQV 122

Query: 127 HMMLKMLMPESFFKGK 142
             M++ ++  S     
Sbjct: 123 QHMVRSVLKLSANPQS 138


>gi|238762970|ref|ZP_04623937.1| Crossover junction endodeoxyribonuclease ruvC [Yersinia
           kristensenii ATCC 33638]
 gi|238698728|gb|EEP91478.1| Crossover junction endodeoxyribonuclease ruvC [Yersinia
           kristensenii ATCC 33638]
          Length = 173

 Score =  199 bits (506), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 51/135 (37%), Positives = 82/135 (60%), Gaps = 1/135 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           ++GIDPG R TG+G++   G  L ++ SG I + V   +  RL  +Y G+T++I  ++P+
Sbjct: 4   VLGIDPGSRVTGYGVIRQQGRQLTYLGSGCIRTVVD-DMPTRLKLIYAGVTEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+  + LKLGQAR  AI++     +PVSEYA   +K+ V+G G  +K Q+
Sbjct: 63  FFAIEQVFMAKNPDSALKLGQARGAAIVAAVNLNLPVSEYAARQVKQTVVGTGAAEKSQV 122

Query: 127 HMMLKMLMPESFFKG 141
             M++ L+       
Sbjct: 123 QHMVRSLLKLPANPQ 137


>gi|238788521|ref|ZP_04632314.1| Crossover junction endodeoxyribonuclease ruvC [Yersinia
           frederiksenii ATCC 33641]
 gi|238723434|gb|EEQ15081.1| Crossover junction endodeoxyribonuclease ruvC [Yersinia
           frederiksenii ATCC 33641]
          Length = 173

 Score =  199 bits (506), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 51/135 (37%), Positives = 82/135 (60%), Gaps = 1/135 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           ++GIDPG R TG+G++   G  L ++ SG I + V   +  RL  +Y G+T++I  ++P+
Sbjct: 4   VLGIDPGSRVTGYGVIRQQGRQLTYLGSGCIRTVVD-DMPTRLKLIYAGVTEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+  + LKLGQAR  AI++     +PVSEYA   +K+ V+G G  +K Q+
Sbjct: 63  FFAIEQVFMAKNPDSALKLGQARGAAIVAAVNLNLPVSEYAARQVKQTVVGTGAAEKSQV 122

Query: 127 HMMLKMLMPESFFKG 141
             M++ L+       
Sbjct: 123 QHMVRSLLKLPANPQ 137


>gi|218659656|ref|ZP_03515586.1| Holliday junction resolvase [Rhizobium etli IE4771]
          Length = 169

 Score =  199 bits (506), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 110/166 (66%), Positives = 135/166 (81%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M+ +IRI+GIDPGLRRTGWGI+D  G++L FV+SGT+ S     LA RLCQL++GL +V+
Sbjct: 1   MQNTIRIVGIDPGLRRTGWGIIDTLGNSLRFVASGTVTSDGDMDLASRLCQLHDGLAEVV 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             ++P+EAAVEQ FVNKDAVATLKLGQAR IA+L PA A + VSEYAPN +KKAVIGVGH
Sbjct: 61  HAYKPDEAAVEQTFVNKDAVATLKLGQARGIAMLVPARAGLQVSEYAPNAVKKAVIGVGH 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
           G+K QIHMMLK+LMP+  FKG DAADALAIA+CHA++  S   + A
Sbjct: 121 GEKHQIHMMLKILMPKVEFKGDDAADALAIAICHAHNRGSNRMRQA 166


>gi|58581283|ref|YP_200299.1| Holliday junction resolvase [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84623201|ref|YP_450573.1| Holliday junction resolvase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|75435936|sp|Q5H2A7|RUVC_XANOR RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|123739146|sp|Q2P578|RUVC_XANOM RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|58425877|gb|AAW74914.1| holliday junction resolvase; endodeoxyribonuclease [Xanthomonas
           oryzae pv. oryzae KACC10331]
 gi|84367141|dbj|BAE68299.1| holliday junction resolvase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 174

 Score =  199 bits (506), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 62/157 (39%), Positives = 94/157 (59%), Gaps = 1/157 (0%)

Query: 6   RIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           RI+GIDPG +RTG GI+D+  G     V    ++       + RL +L  GL ++I+ +R
Sbjct: 3   RILGIDPGSQRTGIGIIDIDEGGRSRHVHHAPLILLGEGDFSQRLKRLLHGLGELIETYR 62

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+E A+E+VF+ K A + LKLGQAR  AI +  +  +PV EYA   +K A++G G  DK 
Sbjct: 63  PDEVAIEKVFMGKSAASALKLGQARGAAICAVVMRDLPVHEYAATEVKLALVGKGGADKL 122

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSG 161
           Q+  M+ +++        DAADALA+A+ HA+   + 
Sbjct: 123 QVQHMVGIMLNLKGKLQPDAADALAVAITHAHVRATA 159


>gi|86141893|ref|ZP_01060417.1| Holliday junction resolvase [Leeuwenhoekiella blandensis MED217]
 gi|85831456|gb|EAQ49912.1| Holliday junction resolvase [Leeuwenhoekiella blandensis MED217]
          Length = 184

 Score =  199 bits (506), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 51/160 (31%), Positives = 87/160 (54%), Gaps = 1/160 (0%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M+    I+GIDPG    G+G++ V    + F+    ++         +L  ++E   ++I
Sbjct: 1   MKSEKIILGIDPGTTIMGFGLIKVVDKKMQFMQLNELMLKKYDDPYVKLKLIFERTVELI 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             + P+E A+E  F  K+  + LKLG+A+ +A+ +     IPV+EY P  IK A+ G G+
Sbjct: 61  DTYHPDEMAIEAPFFGKNVQSMLKLGRAQGVAMAAGLSREIPVTEYLPKKIKMAITGNGN 120

Query: 121 GDKKQIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHAN 159
             K+Q+  ML+ L+   +  K  D+ D LA AVCH +++ 
Sbjct: 121 ASKEQVAKMLQSLLGLKTLPKNLDSTDGLAAAVCHHFNSG 160


>gi|238792582|ref|ZP_04636215.1| Crossover junction endodeoxyribonuclease ruvC [Yersinia intermedia
           ATCC 29909]
 gi|238728217|gb|EEQ19738.1| Crossover junction endodeoxyribonuclease ruvC [Yersinia intermedia
           ATCC 29909]
          Length = 173

 Score =  199 bits (506), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 51/135 (37%), Positives = 82/135 (60%), Gaps = 1/135 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           ++GIDPG R TG+G++   G  L ++ SG I + V   +  RL  +Y G+T++I  ++P+
Sbjct: 4   VLGIDPGSRVTGYGVIRQQGRQLTYLGSGCIRTVVD-DMPTRLKLIYAGVTEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+  + LKLGQAR  AI++     +PVSEYA   +K+ V+G G  +K Q+
Sbjct: 63  FFAIEQVFMAKNPDSALKLGQARGAAIVAAVNLNLPVSEYAARQVKQTVVGTGAAEKSQV 122

Query: 127 HMMLKMLMPESFFKG 141
             M++ L+       
Sbjct: 123 QHMVRSLLKLPANPQ 137


>gi|307718818|ref|YP_003874350.1| crossover junction endodeoxyribonuclease ruvC [Spirochaeta
           thermophila DSM 6192]
 gi|306532543|gb|ADN02077.1| crossover junction endodeoxyribonuclease ruvC [Spirochaeta
           thermophila DSM 6192]
          Length = 169

 Score =  199 bits (506), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 50/165 (30%), Positives = 93/165 (56%), Gaps = 1/165 (0%)

Query: 6   RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           R +GIDPGL  TG+G+++  G    ++ +GTI +    + + RL +++  + +++  + P
Sbjct: 3   RYLGIDPGLATTGYGVIETDGRGHKYIVAGTIRTSSSHTQSARLLKIFRHVQELLLKYAP 62

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
           E   +E++F  ++  +   + QA  +  L+ A+  IPV  YAP  +K+A++G G  DK +
Sbjct: 63  EAIIMEELFFARNTTSAFYVAQAMGVVSLAAAMEDIPVYTYAPQMVKQAIVGHGRADKAE 122

Query: 126 IHMMLKMLMPESFFK-GKDAADALAIAVCHAYHANSGYYKIASQD 169
           I   L++L+     K    A+DALAIA+CH +   + +     +D
Sbjct: 123 IQRFLRLLLDLPDTKMSDHASDALAIALCHVHQHGTPFAIQGGED 167


>gi|212704985|ref|ZP_03313113.1| hypothetical protein DESPIG_03053 [Desulfovibrio piger ATCC 29098]
 gi|212671649|gb|EEB32132.1| hypothetical protein DESPIG_03053 [Desulfovibrio piger ATCC 29098]
          Length = 170

 Score =  199 bits (506), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 63/152 (41%), Positives = 94/152 (61%), Gaps = 3/152 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCV--RQSLAFRLCQLYEGLTDVIKNWR 64
           ++G+DPG +RTGWGI+      L  V  G I +     +  + RL  +Y  L DV+  +R
Sbjct: 8   VLGVDPGSQRTGWGIIAEQSGVLRLVDCGIIRTTSSGEKEFSQRLAVIYRQLADVVGRYR 67

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+EAA+EQVF  K+A + LKLGQAR +A+ + A  R+PVS+Y P  +KK+V+G G  +K+
Sbjct: 68  PQEAAIEQVFTAKNAASALKLGQARGVAVAACAAHRVPVSDYEPTLVKKSVVGTGRAEKE 127

Query: 125 QIHMMLKMLMPESFF-KGKDAADALAIAVCHA 155
           Q+  M++ L+         D  DALA+A+CH 
Sbjct: 128 QVAFMVRRLLNVRGEGWALDTTDALAVAICHL 159


>gi|209886414|ref|YP_002290271.1| crossover junction endodeoxyribonuclease RuvC [Oligotropha
           carboxidovorans OM5]
 gi|226698761|sp|B6JIZ7|RUVC_OLICO RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|209874610|gb|ACI94406.1| crossover junction endodeoxyribonuclease RuvC [Oligotropha
           carboxidovorans OM5]
          Length = 171

 Score =  199 bits (506), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 91/162 (56%), Positives = 118/162 (72%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           + ++IRI+GIDPGLRRTGWG++DV G+ L FV+ GT+ S     L+ RL  ++EGL  V+
Sbjct: 2   ISRTIRILGIDPGLRRTGWGVIDVEGNRLIFVACGTVESRESLPLSERLLAIHEGLVRVV 61

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
              RP EAAVEQ FVNKD   TLKLGQAR +A+L PA++ I V+EYAPN +KK V+G GH
Sbjct: 62  SEHRPLEAAVEQTFVNKDGAGTLKLGQARGVAMLVPAMSGISVAEYAPNLVKKTVVGAGH 121

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGY 162
            DK QI +MLK+L+P++     DAADALAIA+ HA+H  S  
Sbjct: 122 ADKNQIQVMLKILLPKAAPPTPDAADALAIAITHAHHRQSAM 163


>gi|268589738|ref|ZP_06123959.1| crossover junction endodeoxyribonuclease RuvC [Providencia rettgeri
           DSM 1131]
 gi|291314890|gb|EFE55343.1| crossover junction endodeoxyribonuclease RuvC [Providencia rettgeri
           DSM 1131]
          Length = 173

 Score =  199 bits (506), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 54/136 (39%), Positives = 86/136 (63%), Gaps = 1/136 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I + V   L  RL ++Y G++++I  ++P+
Sbjct: 4   ILGIDPGSRVTGYGVIRQQGRQLLYLGSGCIRTQVD-DLPSRLQRIYAGVSEIITQYQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             ++EQVF+ K+A + LKLGQAR +AI++ A   IPV EYA   +K+ V+G G  +K Q+
Sbjct: 63  ILSIEQVFMAKNADSALKLGQARGVAIVAAANMNIPVFEYAARQVKQTVVGTGAAEKSQV 122

Query: 127 HMMLKMLMPESFFKGK 142
             M+K ++  S     
Sbjct: 123 QHMVKSILKLSASPQS 138


>gi|163846621|ref|YP_001634665.1| Holliday junction resolvase [Chloroflexus aurantiacus J-10-fl]
 gi|222524418|ref|YP_002568889.1| Holliday junction resolvase [Chloroflexus sp. Y-400-fl]
 gi|226698748|sp|A9WIH6|RUVC_CHLAA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|254767466|sp|B9LAL7|RUVC_CHLSY RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|163667910|gb|ABY34276.1| crossover junction endodeoxyribonuclease RuvC [Chloroflexus
           aurantiacus J-10-fl]
 gi|222448297|gb|ACM52563.1| crossover junction endodeoxyribonuclease RuvC [Chloroflexus sp.
           Y-400-fl]
          Length = 164

 Score =  199 bits (506), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 53/138 (38%), Positives = 79/138 (57%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R +GIDPG    GWGIV+    +L  +  G + +        RL QLY GL  +I+  R
Sbjct: 1   MRALGIDPGTATMGWGIVEFNNGHLRLIDVGALTTPAGMPHPERLLQLYNGLRAIIERLR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ AAVE++F  K+    L +GQAR +A+L+ A A IPV EY P  +K+AV G G  DK+
Sbjct: 61  PDTAAVEELFFGKNVNTALTVGQARGVALLALAQAGIPVHEYKPLAVKQAVAGYGGADKR 120

Query: 125 QIHMMLKMLMPESFFKGK 142
           Q+  M+++ +  +     
Sbjct: 121 QMQEMVRLTLGLATIPRP 138


>gi|253989950|ref|YP_003041306.1| Holliday junction resolvase [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|211639069|emb|CAR67682.1| crossover junction endodeoxyribonuclease ruvc (ec 3.1.22.4)
           (hollida junction nuclease ruvc) (holliday junction
           resolvase ruvc) [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253781400|emb|CAQ84563.1| crossover junction endodeoxyribonuclease RuvC [Photorhabdus
           asymbiotica]
          Length = 173

 Score =  199 bits (506), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 53/136 (38%), Positives = 85/136 (62%), Gaps = 1/136 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           ++GIDPG R TG+G++   G +L ++ SG I + V   L  RL ++Y G+T++I  ++P+
Sbjct: 4   VLGIDPGSRVTGYGVIRQQGRHLIYLGSGCIRTKVD-DLPSRLQRIYAGITEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+  + LKLGQAR +AIL+     +PV EYA   +K+ V+G G  +K QI
Sbjct: 63  AFAIEQVFMAKNPDSALKLGQARGVAILAAVNQSVPVFEYAARQVKQTVVGTGAAEKSQI 122

Query: 127 HMMLKMLMPESFFKGK 142
             M++ ++  S     
Sbjct: 123 QHMVRSMLKLSANPQS 138


>gi|110597083|ref|ZP_01385372.1| crossover junction endodeoxyribonuclease RuvC [Chlorobium
           ferrooxidans DSM 13031]
 gi|110341274|gb|EAT59739.1| crossover junction endodeoxyribonuclease RuvC [Chlorobium
           ferrooxidans DSM 13031]
          Length = 188

 Score =  198 bits (505), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 53/157 (33%), Positives = 81/157 (51%), Gaps = 1/157 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + ++GIDPG   TG+G++      L  ++SG I     +S A R+ Q+Y  L  +I  + 
Sbjct: 1   MVVLGIDPGSLITGYGVIRQESGVLRVLASGVIRMQASRSHAERIGQIYRELDALITAFV 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+   +E VF+NK+  + LKLGQ R   I       + + EYAP  +K AV G G   K+
Sbjct: 61  PDRVVLETVFLNKNVQSALKLGQVRGAVIALVMNRNLLLHEYAPREVKSAVTGRGSATKE 120

Query: 125 QIHMMLKMLMPESF-FKGKDAADALAIAVCHAYHANS 160
           Q+  M+  L+  +   +  D  DAL IA+C      S
Sbjct: 121 QVAFMVGRLLGLNPVPEPFDVTDALGIALCDLLRGES 157


>gi|190893291|ref|YP_001979833.1| crossover holliday junction endodeoxyribonuclease [Rhizobium etli
           CIAT 652]
 gi|238692540|sp|B3PYZ1|RUVC_RHIE6 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|190698570|gb|ACE92655.1| crossover holliday junction endodeoxyribonuclease protein
           [Rhizobium etli CIAT 652]
 gi|327194144|gb|EGE61014.1| crossover holliday junction endodeoxyribonuclease protein
           [Rhizobium etli CNPAF512]
          Length = 169

 Score =  198 bits (505), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 110/166 (66%), Positives = 135/166 (81%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M+ +IRI+GIDPGLRRTGWGI+D  G++L FV+SGT+ S     LA RLCQL++GL +V+
Sbjct: 1   MQNTIRIVGIDPGLRRTGWGIIDTLGNSLRFVASGTVTSDGDMDLASRLCQLHDGLAEVV 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             ++P+EAAVEQ FVNKDAVATLKLGQAR IA+L PA A + VSEYAPN +KKAVIGVGH
Sbjct: 61  HAYKPDEAAVEQTFVNKDAVATLKLGQARGIAMLVPARAGLHVSEYAPNAVKKAVIGVGH 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
           G+K QIHMMLK+LMP+  FKG DAADALAIA+CHA++  S   + A
Sbjct: 121 GEKHQIHMMLKILMPKVEFKGDDAADALAIAICHAHNRGSNRMRQA 166


>gi|303233816|ref|ZP_07320470.1| crossover junction endodeoxyribonuclease RuvC [Finegoldia magna
           BVS033A4]
 gi|302495250|gb|EFL55002.1| crossover junction endodeoxyribonuclease RuvC [Finegoldia magna
           BVS033A4]
          Length = 164

 Score =  198 bits (505), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 42/138 (30%), Positives = 77/138 (55%), Gaps = 1/138 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPG+   G+ I+D   + +  +  G I +  + +L  RL  +Y+ +  +I  ++
Sbjct: 1   MRVLGIDPGIAIVGYSILDYDNNKINCLEYGCITTSSKSALPDRLSFIYQEMNKIIDEFQ 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P++ A E++F NK+    + + QAR + ILS     + + EY P  IK+AV+G G  DK+
Sbjct: 61  PDDCAFEELFFNKNVKTAITVSQARGVEILSCINKDLRLYEYTPLQIKQAVVGYGRADKR 120

Query: 125 QIHMMLKMLMP-ESFFKG 141
           Q+   +K ++      K 
Sbjct: 121 QVQETVKTILKFNEIPKP 138


>gi|188577436|ref|YP_001914365.1| Holliday junction resolvase [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|238689553|sp|B2STK3|RUVC_XANOP RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|188521888|gb|ACD59833.1| crossover junction endodeoxyribonuclease RuvC [Xanthomonas oryzae
           pv. oryzae PXO99A]
          Length = 174

 Score =  198 bits (505), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 61/157 (38%), Positives = 93/157 (59%), Gaps = 1/157 (0%)

Query: 6   RIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           RI+GIDPG +RTG GI+D+  G     V    ++       + RL +L  GL ++I+ +R
Sbjct: 3   RILGIDPGSQRTGIGIIDIDEGGRSRHVHHAPLILLGEGDFSQRLKRLLHGLGELIETYR 62

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+E A+E+VF+ K A + LKLG AR  AI +  +  +PV EYA   +K A++G G  DK 
Sbjct: 63  PDEVAIEKVFMGKSAASALKLGHARGAAICAVVMRDLPVHEYAATEVKLALVGKGGADKV 122

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSG 161
           Q+  M+ +++        DAADALA+A+ HA+   + 
Sbjct: 123 QVQHMVGIMLNLKGKLQPDAADALAVAITHAHVRATA 159


>gi|284007615|emb|CBA73231.1| crossover junction endodeoxyribonuclease RuvC [Arsenophonus
           nasoniae]
          Length = 173

 Score =  198 bits (505), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 56/135 (41%), Positives = 86/135 (63%), Gaps = 1/135 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G+V   G  L ++ SG I + V   L  RL ++Y G+ ++I  ++P+
Sbjct: 4   ILGIDPGSRITGYGVVRQQGRQLIYLGSGCIRTQVD-DLPTRLQRIYAGIIEIITQYQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             AVEQVF+ K+A + LKLGQAR +AIL+    ++PV EYA   +K++V+G G  +KKQ+
Sbjct: 63  SFAVEQVFMAKNADSALKLGQARGVAILAAVNNQLPVFEYAARQVKQSVVGTGAAEKKQV 122

Query: 127 HMMLKMLMPESFFKG 141
             M+  ++  S    
Sbjct: 123 QHMVCSVLKLSSHPQ 137


>gi|325856898|ref|ZP_08172396.1| crossover junction endodeoxyribonuclease RuvC [Prevotella denticola
           CRIS 18C-A]
 gi|327314586|ref|YP_004330023.1| crossover junction endodeoxyribonuclease RuvC [Prevotella denticola
           F0289]
 gi|325483271|gb|EGC86248.1| crossover junction endodeoxyribonuclease RuvC [Prevotella denticola
           CRIS 18C-A]
 gi|326944457|gb|AEA20342.1| crossover junction endodeoxyribonuclease RuvC [Prevotella denticola
           F0289]
          Length = 191

 Score =  198 bits (505), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 52/155 (33%), Positives = 82/155 (52%), Gaps = 3/155 (1%)

Query: 8   IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEE 67
           +GIDPG    G+G++ V G+    +  G I     + +  RL ++++ +T +I  + P+E
Sbjct: 13  LGIDPGTNVMGYGVLRVRGNKAELIVMGVIDMRKEKDVYLRLGKIFDRVTGIIDEYLPDE 72

Query: 68  AAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIH 127
            A+E  F  K+  + LKLG+A+ +AI +     +P+ EYAP  IK A+ G G   K Q+ 
Sbjct: 73  LAIEAPFFGKNVQSMLKLGRAQGVAIAAAIHHDVPICEYAPLKIKMAITGNGSASKDQVA 132

Query: 128 MMLKMLMPE---SFFKGKDAADALAIAVCHAYHAN 159
            ML+ L+           DA DA+A A CH    N
Sbjct: 133 GMLQKLLHLRDDQMPHFMDATDAVAAAYCHFLQMN 167


>gi|85059238|ref|YP_454940.1| Holliday junction resolvase [Sodalis glossinidius str. 'morsitans']
 gi|123725411|sp|Q2NTJ0|RUVC_SODGM RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|84779758|dbj|BAE74535.1| crossover junction endodeoxyribonuclease [Sodalis glossinidius str.
           'morsitans']
          Length = 173

 Score =  198 bits (505), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 54/135 (40%), Positives = 82/135 (60%), Gaps = 1/135 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+GIV   G  L ++ SG I + V   L  RL  +Y G++++I  ++P+
Sbjct: 4   ILGIDPGSRITGYGIVRQEGCKLTYLGSGCIRTKVD-DLPARLKLIYAGVSEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR +AI+      +PV EYA   +K+ V+G G  +K Q+
Sbjct: 63  CLAIEQVFMAKNADSALKLGQARGVAIVVAMNLDLPVFEYAARQVKQTVVGSGAAEKSQV 122

Query: 127 HMMLKMLMPESFFKG 141
             M++ L+       
Sbjct: 123 QHMVRTLLKLPANPQ 137


>gi|295136120|ref|YP_003586796.1| Holliday junction resolvase [Zunongwangia profunda SM-A87]
 gi|294984135|gb|ADF54600.1| Holliday junction resolvase [Zunongwangia profunda SM-A87]
          Length = 182

 Score =  198 bits (505), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 57/169 (33%), Positives = 89/169 (52%), Gaps = 4/169 (2%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M + I I+GIDPG    G+G++ V   N+ F+    +          +L  ++E    +I
Sbjct: 1   MSEKI-ILGIDPGTTIMGFGLIKVKNKNMEFLQLNELQLKKYDDHYVKLKLIFERTIQLI 59

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             + P+E A+E  F  K+  + LKLG+A+ +A+ +     IP++EY P  IK A+ G G+
Sbjct: 60  DTFHPDEIAIEAPFFGKNVQSMLKLGRAQGVAMAAGLSREIPITEYLPKKIKMAITGNGN 119

Query: 121 GDKKQIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
             K+Q+  ML+ ++   S  K  D+ D LA AVCH Y  NSG   I   
Sbjct: 120 ASKEQVAKMLQSMLKLKSLPKNLDSTDGLAAAVCHFY--NSGQPNIGKS 166


>gi|300904747|ref|ZP_07122577.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
           84-1]
 gi|301304452|ref|ZP_07210564.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
           124-1]
 gi|300403331|gb|EFJ86869.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
           84-1]
 gi|300840303|gb|EFK68063.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
           124-1]
 gi|315257305|gb|EFU37273.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
           85-1]
          Length = 173

 Score =  198 bits (505), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 53/135 (39%), Positives = 84/135 (62%), Gaps = 1/135 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I + V   L  RL  +Y G+T++I  ++P+
Sbjct: 4   ILGIDPGSRVTGYGVICQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR +AI++     +PV EYA   +K+ V+G+G  +K Q+
Sbjct: 63  YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 122

Query: 127 HMMLKMLMPESFFKG 141
             M++ L+       
Sbjct: 123 QHMVRTLLKLPANPQ 137


>gi|197284985|ref|YP_002150857.1| Holliday junction resolvase [Proteus mirabilis HI4320]
 gi|227355389|ref|ZP_03839790.1| Holliday junction nuclease [Proteus mirabilis ATCC 29906]
 gi|238693145|sp|B4ETP6|RUVC_PROMH RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|194682472|emb|CAR42405.1| Holliday junction nuclease [Proteus mirabilis HI4320]
 gi|227164613|gb|EEI49484.1| Holliday junction nuclease [Proteus mirabilis ATCC 29906]
          Length = 173

 Score =  198 bits (505), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 54/131 (41%), Positives = 85/131 (64%), Gaps = 1/131 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I + V   L  RL ++Y G++++I  + P+
Sbjct: 4   ILGIDPGSRVTGYGVIRQQGRQLIYLGSGCIRTQVP-DLPSRLKRIYAGVSEIITQFSPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             +VEQVF+ K+A + LKLGQAR +AIL+     +PV EYA   +K++V+G G  DK Q+
Sbjct: 63  VFSVEQVFMAKNADSALKLGQARGVAILAAVNNDLPVFEYAARQVKQSVVGTGGADKSQV 122

Query: 127 HMMLKMLMPES 137
             M++ ++  S
Sbjct: 123 QHMVRSILKLS 133


>gi|152970924|ref|YP_001336033.1| Holliday junction resolvase [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|262041979|ref|ZP_06015161.1| crossover junction endodeoxyribonuclease RuvC [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
 gi|330001141|ref|ZP_08303908.1| crossover junction endodeoxyribonuclease RuvC [Klebsiella sp. MS
           92-3]
 gi|166233200|sp|A6TB32|RUVC_KLEP7 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|150955773|gb|ABR77803.1| Holliday junction resolvase [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|259040677|gb|EEW41766.1| crossover junction endodeoxyribonuclease RuvC [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
 gi|328537787|gb|EGF63986.1| crossover junction endodeoxyribonuclease RuvC [Klebsiella sp. MS
           92-3]
          Length = 173

 Score =  198 bits (505), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 53/135 (39%), Positives = 84/135 (62%), Gaps = 1/135 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I + V   L  RL  +Y G+T++I  ++P+
Sbjct: 4   ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR +AI++     +PV EYA   +K+ V+G+G  +K Q+
Sbjct: 63  YFAIEQVFMAKNADSALKLGQARGVAIVAATNQALPVFEYAARQVKQTVVGIGSAEKSQV 122

Query: 127 HMMLKMLMPESFFKG 141
             M++ L+       
Sbjct: 123 QHMVRTLLKLPANPQ 137


>gi|242239585|ref|YP_002987766.1| Holliday junction resolvase [Dickeya dadantii Ech703]
 gi|242131642|gb|ACS85944.1| crossover junction endodeoxyribonuclease RuvC [Dickeya dadantii
           Ech703]
          Length = 173

 Score =  198 bits (505), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 49/135 (36%), Positives = 82/135 (60%), Gaps = 1/135 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G+V   G  + ++ SG I + V   +  RL  ++ G++++I  ++P+
Sbjct: 4   ILGIDPGSRITGYGVVRQQGRQISYLGSGCIRTVVD-DIPGRLKLIFAGVSEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ ++A + LKLGQAR  AI++     +PV EYA   +K+ V+G G  +K Q+
Sbjct: 63  CVAIEQVFMARNADSALKLGQARGAAIVAAVNQSLPVFEYAARQVKQTVVGTGAAEKSQV 122

Query: 127 HMMLKMLMPESFFKG 141
             M++ L+       
Sbjct: 123 QHMVRSLLKLPANPQ 137


>gi|153008542|ref|YP_001369757.1| Holliday junction resolvase [Ochrobactrum anthropi ATCC 49188]
 gi|166233276|sp|A6WY74|RUVC_OCHA4 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|151560430|gb|ABS13928.1| crossover junction endodeoxyribonuclease RuvC [Ochrobactrum
           anthropi ATCC 49188]
          Length = 172

 Score =  198 bits (505), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 106/160 (66%), Positives = 130/160 (81%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M+++IRIIGIDPGLRRTGWGIV+  G++L F+ SGT+ S     LA RLCQL+EGL+ V+
Sbjct: 1   MKETIRIIGIDPGLRRTGWGIVESLGNSLHFIGSGTVTSNAEMDLASRLCQLHEGLSKVL 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             + P EAAVE  FVNKDA ATLKLGQAR IA+L+PA A +PV+EYAPN +KKAVIGVGH
Sbjct: 61  HEYMPHEAAVEHTFVNKDATATLKLGQARGIALLAPAQAGLPVAEYAPNAVKKAVIGVGH 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           G+K+QIHMM+K+LMP + F   DAADALAIA+CHA+H  S
Sbjct: 121 GEKQQIHMMVKVLMPRASFDTSDAADALAIAICHAHHRQS 160


>gi|269468515|gb|EEZ80169.1| Holliday junction resolvasome, endonuclease subunit [uncultured
           SUP05 cluster bacterium]
          Length = 156

 Score =  198 bits (505), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 53/157 (33%), Positives = 92/157 (58%), Gaps = 5/157 (3%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++I+G+DPG R TG+G+++       +++SG I +  +  L  R+  ++  +  ++K ++
Sbjct: 1   MKILGVDPGSRVTGFGLIEAQKLKFTYIASGCIRT--KGELTDRITTIFLEIDQIVKKYQ 58

Query: 65  PEEAAVEQVFVNK---DAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
           P+   +E+ F+     +  A +KLG AR   I +  +  I + EY+PN IKKAV+G GH 
Sbjct: 59  PDVVVIERAFMRPDRPNPDAAIKLGHARGAIISAAGVNGITMVEYSPNQIKKAVVGKGHA 118

Query: 122 DKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHA 158
            K Q+  M++  +  +    +DAADALA A+CH YH 
Sbjct: 119 TKDQVSYMVQESLKLNKAPQEDAADALAGAMCHGYHC 155


>gi|189460820|ref|ZP_03009605.1| hypothetical protein BACCOP_01467 [Bacteroides coprocola DSM 17136]
 gi|189432394|gb|EDV01379.1| hypothetical protein BACCOP_01467 [Bacteroides coprocola DSM 17136]
          Length = 189

 Score =  198 bits (505), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 57/165 (34%), Positives = 85/165 (51%), Gaps = 6/165 (3%)

Query: 1   MRKSIR---IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLT 57
           M + ++   I+GIDPG    G+G++ V G     V+ G I          +L  +YE + 
Sbjct: 1   MIQPVKEKIILGIDPGTNIMGYGVLKVTGVKPQVVALGVIDLRKCTDPYLKLKHIYERVQ 60

Query: 58  DVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIG 117
            VI ++ P+E A+E  F  K+  + LKLG+A+ +AI++     IPV+EYAP  IK A+ G
Sbjct: 61  GVISSYLPDELAIEAPFFGKNVQSMLKLGRAQGVAIVAALCRDIPVTEYAPLKIKMAITG 120

Query: 118 VGHGDKKQIHMMLKMLMPESFF---KGKDAADALAIAVCHAYHAN 159
            G   K+Q+  MLK ++           DA DAL  A CH     
Sbjct: 121 NGQASKEQVADMLKRMLHIPESEMGPFMDATDALGAAYCHYLQMG 165


>gi|42520047|ref|NP_965962.1| crossover junction endodeoxyribonuclease RuvC [Wolbachia
           endosymbiont of Drosophila melanogaster]
 gi|59798790|sp|Q73IL5|RUVC_WOLPM RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|42409784|gb|AAS13896.1| crossover junction endodeoxyribonuclease RuvC [Wolbachia
           endosymbiont of Drosophila melanogaster]
          Length = 162

 Score =  198 bits (505), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 64/161 (39%), Positives = 101/161 (62%), Gaps = 1/161 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           ++IIG+DPG+ +TGW I+ +   +N+ F+  GTI +  +     RL  ++E L  VI  +
Sbjct: 2   VKIIGLDPGISKTGWAIISLNEKNNIEFLGGGTISTDGKLGTGERLHIIFEQLKKVISLY 61

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P EAAVE++FVNK+  ++L LG AR + IL+  + ++ ++EY  N +KK++ G GH DK
Sbjct: 62  SPNEAAVEKIFVNKNPKSSLTLGYARGVVILALKITKLTMNEYDANYVKKSITGNGHADK 121

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYK 164
            QI  M+K ++     K    ADALA+A+CHAY   S + +
Sbjct: 122 DQIIFMVKQIVKNLSIKCHHVADALAVAICHAYTKGSCFVE 162


>gi|308049718|ref|YP_003913284.1| crossover junction endodeoxyribonuclease RuvC [Ferrimonas balearica
           DSM 9799]
 gi|307631908|gb|ADN76210.1| crossover junction endodeoxyribonuclease RuvC [Ferrimonas balearica
           DSM 9799]
          Length = 173

 Score =  198 bits (505), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 51/135 (37%), Positives = 83/135 (61%), Gaps = 1/135 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G    ++ SG I       L  RL  +++G+++++K + P+
Sbjct: 4   ILGIDPGSRLTGYGVIRFCGRQFQYLGSGCIRLP-ETDLPSRLKIIFDGVSELVKQFEPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E AVE+VF+ ++A + LKLGQAR  AI++     + VSEY+P  +K+AV+G G   K+Q+
Sbjct: 63  ELAVERVFMGRNADSALKLGQARGAAIVAALNGGLTVSEYSPTQVKQAVVGTGGAKKEQV 122

Query: 127 HMMLKMLMPESFFKG 141
             M+K L+       
Sbjct: 123 QHMVKHLLKLPGTPQ 137


>gi|160886386|ref|ZP_02067389.1| hypothetical protein BACOVA_04396 [Bacteroides ovatus ATCC 8483]
 gi|237723258|ref|ZP_04553739.1| holliday junction resolvase [Bacteroides sp. 2_2_4]
 gi|260173482|ref|ZP_05759894.1| Holliday junction resolvase [Bacteroides sp. D2]
 gi|293372766|ref|ZP_06619147.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides ovatus
           SD CMC 3f]
 gi|298482941|ref|ZP_07001123.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides sp. D22]
 gi|299146874|ref|ZP_07039942.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides sp.
           3_1_23]
 gi|315921752|ref|ZP_07917992.1| holliday junction resolvase [Bacteroides sp. D2]
 gi|156108271|gb|EDO10016.1| hypothetical protein BACOVA_04396 [Bacteroides ovatus ATCC 8483]
 gi|229447780|gb|EEO53571.1| holliday junction resolvase [Bacteroides sp. 2_2_4]
 gi|292632275|gb|EFF50872.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides ovatus
           SD CMC 3f]
 gi|298270913|gb|EFI12492.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides sp. D22]
 gi|298517365|gb|EFI41246.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides sp.
           3_1_23]
 gi|313695627|gb|EFS32462.1| holliday junction resolvase [Bacteroides sp. D2]
          Length = 188

 Score =  198 bits (505), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 52/172 (30%), Positives = 87/172 (50%), Gaps = 6/172 (3%)

Query: 1   MRKSIR---IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLT 57
           M + ++   I+GIDPG    G+G++ V G     ++ G I      +   +L  ++E + 
Sbjct: 1   MIQPVKEKIILGIDPGTTIMGYGVLRVKGTKPEMIAMGIIDLRKFANHYLKLRHIHERVL 60

Query: 58  DVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIG 117
            +I+++ P+E A+E  F  K+  + LKLG+A+ +A+       IP++EYAP  IK A+ G
Sbjct: 61  SIIESYLPDELAIEAPFFGKNVQSMLKLGRAQGVAMAVALSRDIPITEYAPLKIKMAITG 120

Query: 118 VGHGDKKQIHMMLKMLM---PESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
            G   K+Q+  ML+ ++    E      DA D LA A CH         +  
Sbjct: 121 NGQASKEQVADMLQRMLRFPKEDMPTFMDATDGLAAAYCHFLQMGRPTMEKG 172


>gi|325269874|ref|ZP_08136484.1| crossover junction endoribonuclease subunit C [Prevotella
           multiformis DSM 16608]
 gi|324987847|gb|EGC19820.1| crossover junction endoribonuclease subunit C [Prevotella
           multiformis DSM 16608]
          Length = 191

 Score =  198 bits (504), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 54/155 (34%), Positives = 85/155 (54%), Gaps = 3/155 (1%)

Query: 8   IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEE 67
           +GIDPG    G+G++ V+G+    V  G I     + +  RL ++++ +T +I  + P+E
Sbjct: 13  LGIDPGTNVMGYGVLRVSGNKAELVVMGVIDMRKERDVYLRLGKIFDRVTGIIDEFLPDE 72

Query: 68  AAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIH 127
            A+E  F  K+  + LKLG+A+ +AI +     +P+SEYAP  IK A+ G G   K+Q+ 
Sbjct: 73  LAIEAPFFGKNVQSMLKLGRAQGVAIAAAIHHDVPISEYAPLKIKLAITGNGSASKEQVA 132

Query: 128 MMLKMLMPE---SFFKGKDAADALAIAVCHAYHAN 159
            ML+ L+           DA DA+A A CH    N
Sbjct: 133 GMLQKLLHLRDDQMPHFMDATDAVAAAYCHFLQMN 167


>gi|325286716|ref|YP_004262506.1| Crossover junction endodeoxyribonuclease ruvC [Cellulophaga lytica
           DSM 7489]
 gi|324322170|gb|ADY29635.1| Crossover junction endodeoxyribonuclease ruvC [Cellulophaga lytica
           DSM 7489]
          Length = 184

 Score =  198 bits (504), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 52/160 (32%), Positives = 87/160 (54%), Gaps = 1/160 (0%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M K   I+G+DPG    G+G++ V G  + F+    ++         +L  ++E   ++I
Sbjct: 1   MAKERIILGVDPGTTIMGFGLIKVVGKKMEFLQMNELLLQKYNDPYTKLKLIFERTIELI 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             + P+E A+E  F  K+  + LKLG+A+ +A+ +    ++ ++EY P  IK A+ G G+
Sbjct: 61  DTYHPDEMALEAPFYGKNVQSMLKLGRAQGVAMAAGLSRQLVITEYMPKKIKMAITGNGN 120

Query: 121 GDKKQIHMMLK-MLMPESFFKGKDAADALAIAVCHAYHAN 159
             K+Q+  MLK  L  +   K  DA D LA AVCH Y++ 
Sbjct: 121 ASKEQVAGMLKSTLGLKELPKNLDATDGLAAAVCHFYNSG 160


>gi|271500733|ref|YP_003333758.1| crossover junction endodeoxyribonuclease RuvC [Dickeya dadantii
           Ech586]
 gi|270344288|gb|ACZ77053.1| crossover junction endodeoxyribonuclease RuvC [Dickeya dadantii
           Ech586]
          Length = 173

 Score =  198 bits (504), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 54/135 (40%), Positives = 83/135 (61%), Gaps = 1/135 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+GIV   G  + ++ SG I + V   L  RL  +Y G++++I  ++P+
Sbjct: 4   ILGIDPGSRVTGYGIVRQQGRQITYLGSGCIRTGVD-DLPTRLKLIYAGVSEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ ++A + LKLGQAR  AI++     +PV EYA   +K+ V+G G  +K Q+
Sbjct: 63  YFAIEQVFMARNADSALKLGQARGAAIVAAVNQSLPVFEYAARQVKQTVVGTGAAEKSQV 122

Query: 127 HMMLKMLMPESFFKG 141
             M+K L+  S    
Sbjct: 123 QHMVKTLLKLSANPQ 137


>gi|189502161|ref|YP_001957878.1| Holliday junction resolvase [Candidatus Amoebophilus asiaticus 5a2]
 gi|189497602|gb|ACE06149.1| hypothetical protein Aasi_0769 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 182

 Score =  198 bits (504), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 57/169 (33%), Positives = 97/169 (57%), Gaps = 2/169 (1%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDV 59
           M +   IIGIDPG +  G+G++ V        +  G +      S A +L ++++   ++
Sbjct: 1   MLQERIIIGIDPGTQVMGYGVIKVLQHQQFSILQYGILDLQQCPSHALKLQKIFKYTLEI 60

Query: 60  IKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVG 119
           +  + P+EAA+E  F  K+  + LKLG+A+ +A+ +  +  +P++EYAP  IK+A+ G G
Sbjct: 61  LDEFTPDEAALEAPFYGKNVQSMLKLGRAQGVAMAAALMREVPITEYAPRKIKQAITGNG 120

Query: 120 HGDKKQIHMMLKMLMP-ESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
           +  K+Q+  ML  ++P +S  +  DA DALA+AVCHAY       +  S
Sbjct: 121 NASKEQVAYMLMSMLPSKSMPEKLDATDALAVAVCHAYQQQGCNTRTTS 169


>gi|57234747|ref|YP_181187.1| crossover junction endodeoxyribonuclease RuvC [Dehalococcoides
           ethenogenes 195]
 gi|110287671|sp|Q3Z9B2|RUVC_DEHE1 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|57225195|gb|AAW40252.1| crossover junction endodeoxyribonuclease RuvC [Dehalococcoides
           ethenogenes 195]
          Length = 165

 Score =  198 bits (504), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 61/165 (36%), Positives = 101/165 (61%), Gaps = 3/165 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPG    G+G+++ A D L  +   ++       +  RL  +Y+GL +VI+ ++
Sbjct: 1   MRILGIDPGTMVVGYGVIEAADDELSLIGFSSLTPPASAPIPQRLAYIYKGLVEVIELYQ 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+E AVE  F +K+  + L +G+A+A+A+L+ A   + V+EY+P  IK  V G G   K+
Sbjct: 61  PDEVAVESPFADKNIKSALAIGKAQAVALLAAANHSLSVTEYSPACIKSRVSGSGTASKE 120

Query: 125 QIHMMLKMLMPESFFK-GKDAADALAIAVCHAYHANSGYYKIASQ 168
           QI  M+++L+  +      DAADALA+A+CH  H++  +  I SQ
Sbjct: 121 QIQEMVRLLLNLAEIPQPNDAADALAVAICH--HSHRAFANITSQ 163


>gi|307130886|ref|YP_003882902.1| component of RuvABC resolvasome, endonuclease [Dickeya dadantii
           3937]
 gi|306528415|gb|ADM98345.1| component of RuvABC resolvasome, endonuclease [Dickeya dadantii
           3937]
          Length = 173

 Score =  198 bits (504), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 54/135 (40%), Positives = 81/135 (60%), Gaps = 1/135 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+GIV   G  + ++ SG I + V   L  RL  +Y G+++VI  ++P 
Sbjct: 4   ILGIDPGSRVTGYGIVRQQGRQISYLGSGCIRTAVD-DLPTRLKLIYAGVSEVITQFQPN 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ ++A + LKLGQAR  AI++     +PV EYA   +K+ V+G G  +K Q+
Sbjct: 63  YFAIEQVFMARNADSALKLGQARGAAIVAAVNQSLPVFEYAARQVKQTVVGTGAAEKSQV 122

Query: 127 HMMLKMLMPESFFKG 141
             M+K L+       
Sbjct: 123 QHMVKTLLKLPASPQ 137


>gi|123442636|ref|YP_001006613.1| Holliday junction resolvase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|166233311|sp|A1JRK2|RUVC_YERE8 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|122089597|emb|CAL12446.1| crossover junction endodeoxyribonuclease [Yersinia enterocolitica
           subsp. enterocolitica 8081]
          Length = 173

 Score =  198 bits (504), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 51/135 (37%), Positives = 82/135 (60%), Gaps = 1/135 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           ++GIDPG R TG+G++   G  L ++ SG I + V   +  RL  +Y G+T++I  ++P+
Sbjct: 4   VLGIDPGSRVTGYGVIRQQGRQLTYLGSGCIRTVVD-DMPTRLKLIYAGVTEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+  + LKLGQAR  AI++     +PVSEYA   +K+ V+G G  +K Q+
Sbjct: 63  FFAIEQVFMAKNPDSALKLGQARGAAIVAAVNLNLPVSEYAARQVKQTVVGTGAAEKSQV 122

Query: 127 HMMLKMLMPESFFKG 141
             M++ L+       
Sbjct: 123 QHMVRSLLQLPANPQ 137


>gi|159901265|ref|YP_001547512.1| Holliday junction resolvase [Herpetosiphon aurantiacus ATCC 23779]
 gi|159894304|gb|ABX07384.1| crossover junction endodeoxyribonuclease RuvC [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 165

 Score =  198 bits (504), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 64/155 (41%), Positives = 99/155 (63%), Gaps = 1/155 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RIIGIDPG    GWGI+D  G +L  V+ G   +  +Q L  RL  +Y  L  V++++R
Sbjct: 1   MRIIGIDPGTAIMGWGIIDADGSDLTMVAYGAFTTPAKQPLPDRLVSIYNDLAHVLEHYR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P  AAVE++F  K+    + +  AR +A+L+   A++P+ EY P ++K+AV+G G+ DK+
Sbjct: 61  PSVAAVEELFFAKNVTTAMAVSHARGVALLALRQAKLPIFEYKPLSVKQAVVGYGNADKQ 120

Query: 125 QIHMMLKMLMPES-FFKGKDAADALAIAVCHAYHA 158
           Q+  +++M +      K  DAADALA+A+CHAY A
Sbjct: 121 QMQHLVQMTLNLDHIPKPDDAADALAVAMCHAYAA 155


>gi|170718043|ref|YP_001785082.1| Holliday junction resolvase [Haemophilus somnus 2336]
 gi|168826172|gb|ACA31543.1| crossover junction endodeoxyribonuclease RuvC [Haemophilus somnus
           2336]
          Length = 199

 Score =  198 bits (504), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 55/135 (40%), Positives = 82/135 (60%), Gaps = 1/135 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G+V   G  L ++ SG I + +   L  RL ++Y G+T++I  + P 
Sbjct: 14  ILGIDPGSRVTGYGVVRQVGHKLEYLGSGVIRTSID-DLPTRLKRIYAGITEIITQFNPN 72

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+EQVF+ K+  + LKLGQAR  AI++     +PV EY+  TIK+ V+G G  +K Q+
Sbjct: 73  EFAIEQVFMAKNPDSALKLGQARGTAIVAAVNQNLPVFEYSARTIKQTVVGTGAAEKSQV 132

Query: 127 HMMLKMLMPESFFKG 141
             M+  L+  S    
Sbjct: 133 QEMVVRLLQLSDKPQ 147


>gi|224540498|ref|ZP_03681037.1| hypothetical protein BACCELL_05411 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224517879|gb|EEF86984.1| hypothetical protein BACCELL_05411 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 189

 Score =  198 bits (504), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 52/165 (31%), Positives = 86/165 (52%), Gaps = 6/165 (3%)

Query: 1   MRKSIR---IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLT 57
           M + ++   I+GIDPG    G+G++ V G     ++ G I          +L  ++E + 
Sbjct: 1   MIQPVKEKIILGIDPGTTIMGYGVLRVQGTKPEMIAMGIIDLRKMGDHYLKLRHIHERVL 60

Query: 58  DVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIG 117
            +I+++ P+E A+E  F  K+  + LKLG+A+ +A+ +     IP++EYAP  IK A+ G
Sbjct: 61  SIIESYLPDELAIEAPFFGKNVQSMLKLGRAQGVAMAAALSRDIPITEYAPLKIKMAITG 120

Query: 118 VGHGDKKQIHMMLKMLM---PESFFKGKDAADALAIAVCHAYHAN 159
            G   K+Q+  ML+ ++    E      DA D LA A CH     
Sbjct: 121 NGQASKEQVADMLQRMLHFAKEDMPTFMDATDGLAAAYCHFLQMG 165


>gi|238895439|ref|YP_002920174.1| Holliday junction resolvase [Klebsiella pneumoniae NTUH-K2044]
 gi|238547756|dbj|BAH64107.1| Holliday junction resolvase [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 174

 Score =  198 bits (504), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 53/135 (39%), Positives = 84/135 (62%), Gaps = 1/135 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I + V   L  RL  +Y G+T++I  ++P+
Sbjct: 5   ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQPD 63

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR +AI++     +PV EYA   +K+ V+G+G  +K Q+
Sbjct: 64  YFAIEQVFMAKNADSALKLGQARGVAIVAATNQALPVFEYAARQVKQTVVGIGSAEKSQV 123

Query: 127 HMMLKMLMPESFFKG 141
             M++ L+       
Sbjct: 124 QHMVRTLLKLPANPQ 138


>gi|227823321|ref|YP_002827293.1| Holliday junction resolvase [Sinorhizobium fredii NGR234]
 gi|254767481|sp|C3MIH7|RUVC_RHISN RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|227342322|gb|ACP26540.1| crossover junction endodeoxyribonuclease RuvC [Sinorhizobium fredii
           NGR234]
          Length = 170

 Score =  198 bits (504), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 107/167 (64%), Positives = 137/167 (82%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M+ +IRIIGIDPGLRRTGWGI++  G++L FV+SGT+ S     LA RLCQL++GL +V+
Sbjct: 1   MQTTIRIIGIDPGLRRTGWGIIETLGNSLRFVASGTVTSDGEMDLASRLCQLHDGLAEVV 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             ++P EAAVEQ FVNKDA ATLKLGQAR IA+L PA A + V+EYAPN +KKAVIGVGH
Sbjct: 61  HGYQPHEAAVEQTFVNKDATATLKLGQARGIAMLVPARAGLRVAEYAPNAVKKAVIGVGH 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
           G+K+QIHMMLK+LMP++ FKG DAADALAIA+CHA++  +   ++A+
Sbjct: 121 GEKQQIHMMLKVLMPKAEFKGNDAADALAIAICHAHNRQAVTSRLAA 167


>gi|289661898|ref|ZP_06483479.1| Holliday junction resolvase [Xanthomonas campestris pv. vasculorum
           NCPPB702]
 gi|289669611|ref|ZP_06490686.1| Holliday junction resolvase [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 174

 Score =  198 bits (504), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 62/157 (39%), Positives = 94/157 (59%), Gaps = 1/157 (0%)

Query: 6   RIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           RI+GIDPG +RTG GI+D+  G     V    ++       + RL +L +GL ++I+ +R
Sbjct: 3   RILGIDPGSQRTGIGIIDIDEGGRSRHVHHAPLLLLGEGDFSQRLKRLLQGLGELIETYR 62

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P E A+E+VF+ K A + LKLG AR  AI +  +  +PV EYA N +K A++G G  DK 
Sbjct: 63  PNEVAIEKVFMGKSAASALKLGHARGAAICAVVMRDLPVHEYAANEVKLALVGKGGADKV 122

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSG 161
           Q+  M+ +++        DAADALA+A+ HA+   + 
Sbjct: 123 QVQHMVGIMLNLKGKLQPDAADALAVAITHAHVRATA 159


>gi|161511192|ref|NP_810577.2| Holliday junction resolvase [Bacteroides thetaiotaomicron VPI-5482]
 gi|253571815|ref|ZP_04849220.1| holliday junction resolvase [Bacteroides sp. 1_1_6]
 gi|298387606|ref|ZP_06997158.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides sp.
           1_1_14]
 gi|251838412|gb|EES66498.1| holliday junction resolvase [Bacteroides sp. 1_1_6]
 gi|298259813|gb|EFI02685.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides sp.
           1_1_14]
          Length = 188

 Score =  198 bits (504), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 52/172 (30%), Positives = 87/172 (50%), Gaps = 6/172 (3%)

Query: 1   MRKSIR---IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLT 57
           M + ++   I+GIDPG    G+G++ V G     ++ G I      +   +L  ++E + 
Sbjct: 1   MIQPVKEKIILGIDPGTTIMGYGVLRVKGTKPEMIAMGIIDLRKFANHYLKLRHIHERVL 60

Query: 58  DVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIG 117
            +I+++ P+E A+E  F  K+  + LKLG+A+ +A+       IP++EYAP  IK A+ G
Sbjct: 61  SIIESYLPDELAIEAPFFGKNVQSMLKLGRAQGVAMAVALSRDIPITEYAPLKIKMAITG 120

Query: 118 VGHGDKKQIHMMLKMLM---PESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
            G   K+Q+  ML+ ++    E      DA D LA A CH         +  
Sbjct: 121 NGQASKEQVADMLQRMLHFPKEEMPTFMDATDGLAAAYCHFLQMGRPAMEKG 172


>gi|313206320|ref|YP_004045497.1| crossover junction endodeoxyribonuclease ruvc [Riemerella
           anatipestifer DSM 15868]
 gi|312445636|gb|ADQ81991.1| crossover junction endodeoxyribonuclease RuvC [Riemerella
           anatipestifer DSM 15868]
 gi|315023186|gb|EFT36197.1| Holliday junction resolvase [Riemerella anatipestifer RA-YM]
 gi|325336235|gb|ADZ12509.1| Holliday junction resolvasome, endonuclease subunit [Riemerella
           anatipestifer RA-GD]
          Length = 184

 Score =  198 bits (504), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 53/161 (32%), Positives = 89/161 (55%), Gaps = 2/161 (1%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M+    I+GIDPG    G+GI+ V    +  VS   ++     +   +L  ++E    +I
Sbjct: 1   MKVEKIILGIDPGTSVMGFGIISVLNQKMELVSINELILKKYPNHETKLKYIFERTLSLI 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             + P+E A+E  F  K+  + LKLG+A+ +A+ +     IP++EY+P  IK A+ G G+
Sbjct: 61  DEFHPDEVALEAPFYGKNVQSMLKLGRAQGVAMAASLYRDIPITEYSPKKIKMAITGNGN 120

Query: 121 GDKKQIHMMLKMLMPESFFKG--KDAADALAIAVCHAYHAN 159
             K+Q+  ML+ L+    F     DA+D LA+AVCH +++ 
Sbjct: 121 ASKEQVAGMLQNLLKLKEFPTKYLDASDGLAVAVCHHFNSG 161


>gi|157156383|ref|YP_001463166.1| Holliday junction resolvase [Escherichia coli E24377A]
 gi|167012678|sp|A7ZMY7|RUVC_ECO24 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|157078413|gb|ABV18121.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           E24377A]
          Length = 173

 Score =  198 bits (504), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 52/135 (38%), Positives = 84/135 (62%), Gaps = 1/135 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I + V   L  RL  +Y G+T++I  ++P+
Sbjct: 4   ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR +AI++     +PV EYA   +K+ V+G+G  +K Q+
Sbjct: 63  FFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 122

Query: 127 HMMLKMLMPESFFKG 141
             M++ ++       
Sbjct: 123 QHMVRTMLKLPANPQ 137


>gi|189466727|ref|ZP_03015512.1| hypothetical protein BACINT_03102 [Bacteroides intestinalis DSM
           17393]
 gi|189434991|gb|EDV03976.1| hypothetical protein BACINT_03102 [Bacteroides intestinalis DSM
           17393]
          Length = 189

 Score =  198 bits (504), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 52/165 (31%), Positives = 86/165 (52%), Gaps = 6/165 (3%)

Query: 1   MRKSIR---IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLT 57
           M + ++   I+GIDPG    G+G++ V G     ++ G I          +L  ++E + 
Sbjct: 1   MIQPVKEKIILGIDPGTTIMGYGVLRVVGTKPEMIAMGIIDLRKFGDHYLKLRHIHERVL 60

Query: 58  DVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIG 117
            +I+++ P+E A+E  F  K+  + LKLG+A+ +A+ +     IP++EYAP  IK A+ G
Sbjct: 61  SIIESYLPDELAIEAPFFGKNVQSMLKLGRAQGVAMAAALSRDIPITEYAPLKIKMAITG 120

Query: 118 VGHGDKKQIHMMLKMLM---PESFFKGKDAADALAIAVCHAYHAN 159
            G   K+Q+  ML+ ++    E      DA D LA A CH     
Sbjct: 121 NGQASKEQVADMLQRMLHFAKEDMPTFMDATDGLAAAYCHFLQMG 165


>gi|219849467|ref|YP_002463900.1| Holliday junction resolvase [Chloroflexus aggregans DSM 9485]
 gi|254767465|sp|B8G4I8|RUVC_CHLAD RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|219543726|gb|ACL25464.1| crossover junction endodeoxyribonuclease RuvC [Chloroflexus
           aggregans DSM 9485]
          Length = 164

 Score =  197 bits (503), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 53/138 (38%), Positives = 79/138 (57%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R +GIDPG    GWG+V+  G  L  V  G + +        RL QLY GL  +I+  +
Sbjct: 1   MRALGIDPGTATMGWGVVERDGGVLRLVDVGALTTPAGMPQPERLLQLYNGLRAIIERLQ 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ AAVE++F  K+    L +GQAR +A+L+ A A IPV EY P  +K+AV G G  DK+
Sbjct: 61  PDTAAVEELFFGKNVNTALTVGQARGVALLALAQAGIPVYEYKPTAVKQAVAGYGGADKR 120

Query: 125 QIHMMLKMLMPESFFKGK 142
           Q+  M+++ +  +     
Sbjct: 121 QMQEMVRLTLGLATVPRP 138


>gi|238751589|ref|ZP_04613079.1| Crossover junction endodeoxyribonuclease ruvC [Yersinia rohdei ATCC
           43380]
 gi|238710151|gb|EEQ02379.1| Crossover junction endodeoxyribonuclease ruvC [Yersinia rohdei ATCC
           43380]
          Length = 173

 Score =  197 bits (503), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 51/135 (37%), Positives = 82/135 (60%), Gaps = 1/135 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           ++GIDPG R TG+G++   G  L ++ SG I + V   +  RL  +Y G+T++I  ++P+
Sbjct: 4   VLGIDPGSRVTGYGVIHQQGRQLTYLGSGCIRTVVD-DMPTRLKLIYAGVTEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+  + LKLGQAR  AI++     +PVSEYA   +K+ V+G G  +K Q+
Sbjct: 63  FFAIEQVFMAKNPDSALKLGQARGAAIVAAVNLNLPVSEYAARQVKQTVVGTGAAEKSQV 122

Query: 127 HMMLKMLMPESFFKG 141
             M++ L+       
Sbjct: 123 QHMVRSLLKLPANPQ 137


>gi|258512079|ref|YP_003185513.1| crossover junction endodeoxyribonuclease RuvC [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257478805|gb|ACV59124.1| crossover junction endodeoxyribonuclease RuvC [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 184

 Score =  197 bits (503), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 51/139 (36%), Positives = 86/139 (61%), Gaps = 1/139 (0%)

Query: 3   KSIRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           +S+RI+G+DPGL R G+GI++   GD+L  V+ G I +     L  RL  +++ LT++ +
Sbjct: 2   ESLRILGVDPGLARLGFGIIERGPGDSLHHVAHGCIETGADTPLPERLRHIFQQLTELCR 61

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
             RP   AVE++F +++      +GQAR +A+L+ A A + V EY P  +K+AV G G  
Sbjct: 62  THRPAVMAVEELFFSRNTTTAFTVGQARGVALLAGAEAGLAVMEYTPMQVKQAVTGYGRA 121

Query: 122 DKKQIHMMLKMLMPESFFK 140
           DK+Q+  M+++L+  +   
Sbjct: 122 DKRQVQEMVRLLLRLTSVP 140


>gi|158422137|ref|YP_001523429.1| Holliday junction resolvase [Azorhizobium caulinodans ORS 571]
 gi|172048035|sp|A8IM96|RUVC_AZOC5 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|158329026|dbj|BAF86511.1| crossover junction endodeoxyribonuclease [Azorhizobium caulinodans
           ORS 571]
          Length = 169

 Score =  197 bits (503), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 79/168 (47%), Positives = 115/168 (68%), Gaps = 1/168 (0%)

Query: 1   MRKSI-RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDV 59
           M   + RIIG+DPGLRRTGWG+++  G  L +V+ GTI+      +A RL +L+ GL +V
Sbjct: 1   MTNGMIRIIGLDPGLRRTGWGVIEAQGTRLTYVACGTILPPENAPMAERLAELHRGLAEV 60

Query: 60  IKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVG 119
           +    P+EAAVE+ FVN +  +TLKLGQAR + +L+PA A + V+EYAP  +KK V+G G
Sbjct: 61  LARHAPDEAAVEETFVNMNPSSTLKLGQARGVVMLAPAQAGLSVAEYAPLLVKKTVVGAG 120

Query: 120 HGDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
             +K QI MM+ +L+P++  + +DAADALA+AV HA+H      + A+
Sbjct: 121 RAEKAQIRMMIGVLLPKATPQTEDAADALAVAVTHAHHRGPAALRRAA 168


>gi|333030433|ref|ZP_08458494.1| Crossover junction endodeoxyribonuclease ruvC [Bacteroides
           coprosuis DSM 18011]
 gi|332741030|gb|EGJ71512.1| Crossover junction endodeoxyribonuclease ruvC [Bacteroides
           coprosuis DSM 18011]
          Length = 189

 Score =  197 bits (503), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 52/165 (31%), Positives = 83/165 (50%), Gaps = 6/165 (3%)

Query: 1   MRKSIR---IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLT 57
           M + ++   I+GIDPG    G+G++ V G      + G I     +    +L  ++E + 
Sbjct: 1   MIQPVKEKIILGIDPGTTIMGYGVIRVNGTTPKMEAMGVIDMRKIKDHYLKLKHIHERVY 60

Query: 58  DVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIG 117
            +I ++ P+E A+E  F  K+  + LKLG+A+ IA+       IP++EYAP  IK A+ G
Sbjct: 61  GLIDSFLPDEVAIEAPFYGKNVQSMLKLGRAQGIAMAVALSRDIPITEYAPLKIKMAITG 120

Query: 118 VGHGDKKQIHMMLKMLM---PESFFKGKDAADALAIAVCHAYHAN 159
            G   K+Q+  ML+ ++           DA D LA A CH     
Sbjct: 121 NGKASKEQVAEMLQRILRFDKSEMPVFLDATDGLAAAYCHYLQMG 165


>gi|319406255|emb|CBI79892.1| Holliday junction nuclease ruvC [Bartonella sp. AR 15-3]
          Length = 169

 Score =  197 bits (503), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 104/168 (61%), Positives = 134/168 (79%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M ++IRIIGIDPGLRRTGWG++D+ G++L FV+SGT+ S  +  LA RLCQ+YEGL+ VI
Sbjct: 1   MVETIRIIGIDPGLRRTGWGVIDLCGNHLNFVASGTLHSNAQNDLASRLCQIYEGLSKVI 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             + P EAAVE VFVNKDA ATLKLGQARAIA+L PA   + +SEYAPN +KK+VIGVGH
Sbjct: 61  HQFMPHEAAVEHVFVNKDAAATLKLGQARAIALLVPAQEGLSISEYAPNKVKKSVIGVGH 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
           G+K+QIHMM+K+L+P + F   DAADALA+A+CH+ H  S  Y++ + 
Sbjct: 121 GEKEQIHMMVKILLPRAEFDSSDAADALALAICHSAHRTSSSYRLKAS 168


>gi|256818926|ref|YP_003140205.1| Holliday junction resolvase [Capnocytophaga ochracea DSM 7271]
 gi|315224307|ref|ZP_07866141.1| crossover junction endoribonuclease subunit C [Capnocytophaga
           ochracea F0287]
 gi|256580509|gb|ACU91644.1| crossover junction endodeoxyribonuclease RuvC [Capnocytophaga
           ochracea DSM 7271]
 gi|314945697|gb|EFS97712.1| crossover junction endoribonuclease subunit C [Capnocytophaga
           ochracea F0287]
          Length = 181

 Score =  197 bits (503), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 48/161 (29%), Positives = 86/161 (53%), Gaps = 1/161 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG    G+G++ V  D +  +    +      +   +L  ++    ++I  ++P+
Sbjct: 5   ILGIDPGTTIMGFGLIQVERDTMKLLQLNELQLSKYSNHYLKLSVIFNRTLELIDTYKPD 64

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E  F  K+  + LKLG+A+ +A+ +     IP++EY P  +K A+ G G   K+Q+
Sbjct: 65  ELAIEAPFFGKNVQSMLKLGRAQGVAMAAGLSREIPITEYEPKKVKMAITGNGSASKEQV 124

Query: 127 HMMLKMLMP-ESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
             ML+ L+  +   K  DA D LA+AVCH ++      + +
Sbjct: 125 AKMLQQLLNIKELPKHFDATDGLAVAVCHFFNGGKSQKQQS 165


>gi|49476148|ref|YP_034189.1| Holliday junction resolvase [Bartonella henselae str. Houston-1]
 gi|81648456|sp|Q6G5Q9|RUVC_BARHE RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|49238956|emb|CAF28254.1| Holliday junction nuclease ruvC [Bartonella henselae str.
           Houston-1]
          Length = 169

 Score =  197 bits (503), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 94/139 (67%), Positives = 118/139 (84%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M ++IRIIGIDPGLRRTGWG++D +G+ L FV++GT+ S  R  LA RLCQLY+GLTD++
Sbjct: 1   MAETIRIIGIDPGLRRTGWGVIDFSGNRLQFVAAGTLTSDARCDLASRLCQLYKGLTDIL 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             + P+EAAVE VFVNKDA ATLKLGQARAIA+L+PA A +PV EYAPN +KK+VIGVGH
Sbjct: 61  HQFMPQEAAVEHVFVNKDATATLKLGQARAIALLAPAQANLPVFEYAPNKVKKSVIGVGH 120

Query: 121 GDKKQIHMMLKMLMPESFF 139
           GDK+QIHMM+K+L+P + F
Sbjct: 121 GDKEQIHMMVKVLLPRAEF 139


>gi|213024295|ref|ZP_03338742.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 135

 Score =  197 bits (503), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 53/132 (40%), Positives = 84/132 (63%), Gaps = 1/132 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I + V   L  RL  +Y G+T++I  ++P+
Sbjct: 4   ILGIDPGSRITGYGVIRQVGRQLTYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR +AI++     +PV EYA   +K+ V+G+G  +K Q+
Sbjct: 63  YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 122

Query: 127 HMMLKMLMPESF 138
             M++ L+    
Sbjct: 123 QHMVRTLLKLPA 134


>gi|86359069|ref|YP_470961.1| Holliday junction resolvase [Rhizobium etli CFN 42]
 gi|123724728|sp|Q2K4K2|RUVC_RHIEC RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|86283171|gb|ABC92234.1| crossover junction endoribonuclease protein [Rhizobium etli CFN 42]
          Length = 169

 Score =  197 bits (502), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 111/166 (66%), Positives = 136/166 (81%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M+ +IRIIGIDPGLRRTGWGI+D  G++L FV+SGT+ S     LA RLCQL++GL D++
Sbjct: 1   MQNTIRIIGIDPGLRRTGWGIIDTLGNSLKFVASGTVTSDGEMDLASRLCQLHDGLADIV 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
              +P+EAAVEQ FVNKDAVATLKLGQAR IA+L PA A +PVSEYAPN +KKAVIGVGH
Sbjct: 61  HAHKPDEAAVEQTFVNKDAVATLKLGQARGIAMLVPARAGLPVSEYAPNAVKKAVIGVGH 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
           G+K+QIHMMLK+LMP++ FKG DAADALAIA+CHA++      + A
Sbjct: 121 GEKQQIHMMLKILMPKAEFKGDDAADALAIAICHAHNRGGHRMRQA 166


>gi|260592445|ref|ZP_05857903.1| crossover junction endodeoxyribonuclease RuvC [Prevotella veroralis
           F0319]
 gi|260535491|gb|EEX18108.1| crossover junction endodeoxyribonuclease RuvC [Prevotella veroralis
           F0319]
          Length = 191

 Score =  197 bits (502), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 50/153 (32%), Positives = 84/153 (54%), Gaps = 3/153 (1%)

Query: 8   IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEE 67
           +GIDPG    G+G++ V G+ +  +  G I     + +  RL ++++ ++ +I+ + P+E
Sbjct: 13  LGIDPGTNVMGYGVLRVRGNKVELIVMGVIDMRREKDVYLRLGKIFDRVSGIIEEYLPDE 72

Query: 68  AAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIH 127
            A+E  F  K+  + LKLG+A+ +AI +     +P+ EYAP  IK A+ G G   K+Q+ 
Sbjct: 73  LAIEAPFFGKNVQSMLKLGRAQGVAIAAAIHHDVPIQEYAPLKIKMAITGNGSASKEQVA 132

Query: 128 MMLKMLMPE---SFFKGKDAADALAIAVCHAYH 157
            ML+ L+           DA DA+A A CH   
Sbjct: 133 GMLQKLLHLRDNQMPHFMDATDAVAAAYCHFLQ 165


>gi|258405867|ref|YP_003198609.1| Holliday junction resolvase [Desulfohalobium retbaense DSM 5692]
 gi|257798094|gb|ACV69031.1| crossover junction endodeoxyribonuclease RuvC [Desulfohalobium
           retbaense DSM 5692]
          Length = 170

 Score =  197 bits (502), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 58/162 (35%), Positives = 89/162 (54%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           ++G+DPG R TG+G+V      L  + +GTI     + L+ RL  L   +  VI  W P 
Sbjct: 9   VLGLDPGSRCTGFGVVRERSGQLTLLETGTIRPKSSEGLSLRLGALLTQIAVVIDRWSPH 68

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           EAA+E VFV ++  + LKLGQAR  A+ +     + VSEYAP  +KK ++G G  +K Q+
Sbjct: 69  EAAIEDVFVARNTASALKLGQARGAALAACGSRGLDVSEYAPTVVKKTLVGAGRAEKSQV 128

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
             M+  ++       +D++DALA+A+CH           A +
Sbjct: 129 AFMVGQMLGCKPQWAEDSSDALAVALCHCNQRRLSRLTAAGR 170


>gi|325929366|ref|ZP_08190496.1| Holliday junction endonuclease RuvC [Xanthomonas perforans 91-118]
 gi|325540278|gb|EGD11890.1| Holliday junction endonuclease RuvC [Xanthomonas perforans 91-118]
          Length = 174

 Score =  197 bits (502), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 61/157 (38%), Positives = 94/157 (59%), Gaps = 1/157 (0%)

Query: 6   RIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           RI+GIDPG +RTG GI+D+  G     V    ++       + RL +L +GL ++I+ +R
Sbjct: 3   RILGIDPGSQRTGIGIIDIDEGGRSRHVHHAPLMLLGEGDFSQRLKRLLQGLGELIEAYR 62

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+E A+E+VF+ K A + LKLG AR  AI +  +  +PV EYA   +K A++G G  DK 
Sbjct: 63  PDEVAIERVFMGKSAASALKLGHARGAAICAVVMRDLPVHEYAATEVKLALVGKGGADKV 122

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSG 161
           Q+  M+ +++        DAADALA+A+ HA+   + 
Sbjct: 123 QVQHMVGIMLNLKGKLQPDAADALAVAITHAHVRATA 159


>gi|257095743|ref|YP_003169384.1| crossover junction endodeoxyribonuclease RuvC [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257048267|gb|ACV37455.1| crossover junction endodeoxyribonuclease RuvC [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 184

 Score =  197 bits (502), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 56/139 (40%), Positives = 87/139 (62%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+G+DPGLR TG+G++   G+ L +++SG I +  + SL  RL  ++  L +++   +
Sbjct: 9   LRILGVDPGLRITGFGLIAKMGNRLGYLASGCIRTDAKASLPARLGTIHAALRELVAEHQ 68

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P++AAVE VFVN +  +TL LGQAR  AI     + + V+EY    IK+AV+G GH DK 
Sbjct: 69  PDQAAVEIVFVNVNPQSTLLLGQARGAAITGLVSSGLEVAEYTALQIKQAVVGNGHADKL 128

Query: 125 QIHMMLKMLMPESFFKGKD 143
           Q+  M++ L+  S     D
Sbjct: 129 QVQHMVRRLLSLSADPSPD 147


>gi|187611518|sp|Q1QHP5|RUVC_NITHX RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
          Length = 170

 Score =  197 bits (502), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 90/164 (54%), Positives = 121/164 (73%)

Query: 2   RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
              IRI+GIDPGLRRTGWG++D+ G+ L FV  G++ +  + +LA RL  ++EGL  V+ 
Sbjct: 3   SSPIRILGIDPGLRRTGWGVLDIEGNRLMFVGCGSVETREQMALASRLLAIHEGLGRVLD 62

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
            +RP EAA+EQ FVNKD VATLKLGQAR +A+L+PA+  I V+EYAPN +KK V+G GH 
Sbjct: 63  EFRPAEAAIEQTFVNKDGVATLKLGQARGVAMLAPAMFGIVVAEYAPNQVKKTVVGAGHA 122

Query: 122 DKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
           DK QI  MLK+L+P++  K  DAADALAIA+ HA+H  +   ++
Sbjct: 123 DKTQIQAMLKILLPKADPKSADAADALAIAITHAHHRGAAALRM 166


>gi|332799126|ref|YP_004460625.1| Crossover junction endodeoxyribonuclease ruvC [Tepidanaerobacter
           sp. Re1]
 gi|332696861|gb|AEE91318.1| Crossover junction endodeoxyribonuclease ruvC [Tepidanaerobacter
           sp. Re1]
          Length = 166

 Score =  197 bits (502), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 49/136 (36%), Positives = 85/136 (62%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + I+G+DPG+  +G+GI+     N   V  G I +  + ++ +RL Q++EG  ++I+ ++
Sbjct: 1   MLIMGVDPGIAISGYGIISNEQSNCYVVEYGVIRTPPKLAMPYRLKQIHEGYIELIQKYK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  AVE++F NK+A   + +GQAR +A+L+ AL++I V EY P  +K+AV+G G  DK+
Sbjct: 61  PDVVAVEELFFNKNAKTIISVGQARGVAVLAAALSKIEVFEYTPLQVKQAVVGYGRADKQ 120

Query: 125 QIHMMLKMLMPESFFK 140
           Q+  M+K         
Sbjct: 121 QVQQMIKTSFNLEELP 136


>gi|329296285|ref|ZP_08253621.1| Holliday junction resolvase [Plautia stali symbiont]
          Length = 175

 Score =  197 bits (502), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 52/135 (38%), Positives = 81/135 (60%), Gaps = 1/135 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I + V   L  RL  +Y G++++I  + P+
Sbjct: 4   ILGIDPGSRVTGYGVIRQTGRQLSYLGSGCIRTNV-TDLPSRLKLIYAGVSEIITQFAPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR  AI++     +PV EYA   +K+ V G+G  +K Q+
Sbjct: 63  YFAIEQVFMAKNADSALKLGQARGAAIVAAVNLDLPVFEYAARQVKQTVTGIGSAEKSQV 122

Query: 127 HMMLKMLMPESFFKG 141
             M++ L+       
Sbjct: 123 QHMVRTLLKLLANPQ 137


>gi|282880737|ref|ZP_06289438.1| crossover junction endodeoxyribonuclease RuvC [Prevotella
           timonensis CRIS 5C-B1]
 gi|281305399|gb|EFA97458.1| crossover junction endodeoxyribonuclease RuvC [Prevotella
           timonensis CRIS 5C-B1]
          Length = 196

 Score =  197 bits (502), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 50/156 (32%), Positives = 79/156 (50%), Gaps = 3/156 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG    G+G++ +       ++ G I          +L  ++E +T +I  + P+
Sbjct: 13  ILGIDPGTNVMGYGVLRIVKGKPSMLAMGVIDMRKTGDPYLKLGHIFERVTGIIDEYLPD 72

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E  F  K+  + LKLG+A+ +AI +     IP+ EYAP  IK ++ G G   K+Q+
Sbjct: 73  EMAIEAPFFGKNVQSMLKLGRAQGVAIAAAIQHDIPIHEYAPLKIKMSITGQGQASKEQV 132

Query: 127 HMMLKMLMP---ESFFKGKDAADALAIAVCHAYHAN 159
             ML+ L+    +      DA DAL  A CH     
Sbjct: 133 AGMLQRLLKIDAQEMPSFMDATDALGAAYCHFMQLG 168


>gi|319953519|ref|YP_004164786.1| crossover junction endodeoxyribonuclease ruvc [Cellulophaga
           algicola DSM 14237]
 gi|319422179|gb|ADV49288.1| Crossover junction endodeoxyribonuclease ruvC [Cellulophaga
           algicola DSM 14237]
          Length = 184

 Score =  197 bits (502), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 50/160 (31%), Positives = 85/160 (53%), Gaps = 1/160 (0%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M     I+GIDPG    G+G++ V    + F+    ++         +L  ++E   ++I
Sbjct: 1   MANEKIILGIDPGTTIMGFGLIKVVNKKMEFLQMNELLLQKYNDPYVKLKLIFERTIELI 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             + P+E A+E  F  K+  + LKLG+A+ +A+ +     IP++EY P  IK A+ G G+
Sbjct: 61  DTYHPDEIAIEAPFFGKNVQSMLKLGRAQGVAMAAGLSREIPITEYLPKKIKMAITGNGN 120

Query: 121 GDKKQIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHAN 159
             K+Q+  ML+ ++   +  K  D+ D LA AVCH Y+  
Sbjct: 121 ASKEQVAKMLQSMLGLKTLPKNLDSTDGLAAAVCHFYNEG 160


>gi|260889010|ref|ZP_05900273.1| crossover junction endodeoxyribonuclease RuvC [Leptotrichia
           hofstadii F0254]
 gi|260861070|gb|EEX75570.1| crossover junction endodeoxyribonuclease RuvC [Leptotrichia
           hofstadii F0254]
          Length = 189

 Score =  197 bits (502), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 41/136 (30%), Positives = 73/136 (53%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+G+DPG    G+ IVD        +  G I +   + +  RL ++Y+GL ++IK W+
Sbjct: 1   MRILGVDPGTAIVGYAIVDYENGKYVPLDYGCIFTDKDEDMPVRLEKIYDGLENIIKLWK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P + A+E +F  K+    +K+GQAR +  L+    ++ +  Y P  +K  +   G  +KK
Sbjct: 61  PTDMAIEDLFFFKNQKTVIKVGQARGVITLAGQKNKLNLYSYTPLQVKMGIASYGRAEKK 120

Query: 125 QIHMMLKMLMPESFFK 140
           QI  M+K+++      
Sbjct: 121 QIQEMVKLILKLEEIP 136


>gi|257125464|ref|YP_003163578.1| Holliday junction resolvase [Leptotrichia buccalis C-1013-b]
 gi|257049403|gb|ACV38587.1| crossover junction endodeoxyribonuclease RuvC [Leptotrichia
           buccalis C-1013-b]
          Length = 189

 Score =  197 bits (502), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 40/136 (29%), Positives = 73/136 (53%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPG    G+ +VD        +  G I +   + +  RL ++Y+G+ ++I+ W+
Sbjct: 1   MRILGIDPGTAIVGYAVVDYENGKYKPLDYGCIFTDKDEDMPVRLEKIYDGIENIIQLWK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P + A+E +F  K+    +K+GQAR +  L+    ++ +  Y P  +K  +   G  DKK
Sbjct: 61  PVDMAIEDLFFFKNQKTVIKVGQARGVITLAGQKNKLNLYSYTPLQVKMGIASYGRADKK 120

Query: 125 QIHMMLKMLMPESFFK 140
           QI  M+K+++      
Sbjct: 121 QIQEMVKLMLKLDEIP 136


>gi|85714395|ref|ZP_01045383.1| Holliday junction resolvase [Nitrobacter sp. Nb-311A]
 gi|85698842|gb|EAQ36711.1| Holliday junction resolvase [Nitrobacter sp. Nb-311A]
          Length = 200

 Score =  197 bits (502), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 90/159 (56%), Positives = 115/159 (72%)

Query: 2   RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
              IRI+GIDPGLRRTGWG++D  G+ L FV  G++ +     LA RL  ++ GL  V+ 
Sbjct: 31  SSPIRILGIDPGLRRTGWGVLDTEGNRLVFVGCGSVETREHMELASRLLAIHAGLGAVLD 90

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
            +RP EAA+EQ FVNKD VATLKLGQAR +A+L+PA+  I V+EYAPN +KK V+G GH 
Sbjct: 91  RFRPAEAAIEQTFVNKDGVATLKLGQARGVAMLAPAMFGIAVAEYAPNQVKKTVVGAGHA 150

Query: 122 DKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           DK QI  MLK+L+P++  K  DAADALAIA+ HA+H  S
Sbjct: 151 DKIQIQAMLKILLPKADPKSADAADALAIAITHAHHRKS 189


>gi|269469245|gb|EEZ80771.1| Holliday junction resolvasome, endonuclease subunit [uncultured
           SUP05 cluster bacterium]
          Length = 156

 Score =  197 bits (502), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 53/157 (33%), Positives = 92/157 (58%), Gaps = 5/157 (3%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++I+G+DPG R TG+G+++       +++SG I +  +  L  R+  ++  +  ++K ++
Sbjct: 1   MKILGVDPGSRVTGFGLIEAQKLKFIYIASGCIRT--KGELTDRITTIFLEIDQIVKKYQ 58

Query: 65  PEEAAVEQVFVNK---DAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
           P+   +E+ F+     +  A +KLG AR   I +  +  I + EY+PN IKKAV+G GH 
Sbjct: 59  PDVVVIERAFMRPDRPNPDAAIKLGHARGAIISAAGVNGITMVEYSPNQIKKAVVGKGHA 118

Query: 122 DKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHA 158
            K Q+  M++  +  +    +DAADALA A+CH YH 
Sbjct: 119 TKDQVSYMVQESLKLNKAPQEDAADALAGAMCHGYHC 155


>gi|92118983|ref|YP_578712.1| Holliday junction resolvase [Nitrobacter hamburgensis X14]
 gi|91801877|gb|ABE64252.1| Holliday junction endonuclease RuvC [Nitrobacter hamburgensis X14]
          Length = 178

 Score =  197 bits (502), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 90/164 (54%), Positives = 121/164 (73%)

Query: 2   RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
              IRI+GIDPGLRRTGWG++D+ G+ L FV  G++ +  + +LA RL  ++EGL  V+ 
Sbjct: 11  SSPIRILGIDPGLRRTGWGVLDIEGNRLMFVGCGSVETREQMALASRLLAIHEGLGRVLD 70

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
            +RP EAA+EQ FVNKD VATLKLGQAR +A+L+PA+  I V+EYAPN +KK V+G GH 
Sbjct: 71  EFRPAEAAIEQTFVNKDGVATLKLGQARGVAMLAPAMFGIVVAEYAPNQVKKTVVGAGHA 130

Query: 122 DKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
           DK QI  MLK+L+P++  K  DAADALAIA+ HA+H  +   ++
Sbjct: 131 DKTQIQAMLKILLPKADPKSADAADALAIAITHAHHRGAAALRM 174


>gi|213962625|ref|ZP_03390886.1| crossover junction endodeoxyribonuclease RuvC [Capnocytophaga
           sputigena Capno]
 gi|213954620|gb|EEB65941.1| crossover junction endodeoxyribonuclease RuvC [Capnocytophaga
           sputigena Capno]
          Length = 181

 Score =  197 bits (502), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 48/161 (29%), Positives = 87/161 (54%), Gaps = 1/161 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG    G+G++ V  D +  +    +      +   +L  ++    ++I  ++P+
Sbjct: 5   ILGIDPGTTIMGFGLIQVERDTMKLLQLNELQLSKYSNHYLKLSVIFNRTLELIDTYKPD 64

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E  F  K+  + LKLG+A+ +A+ +    +IP++EY P  +K A+ G G   K+Q+
Sbjct: 65  ELAIEAPFFGKNVQSMLKLGRAQGVAMAAGLSRQIPITEYEPKKVKMAITGNGSASKEQV 124

Query: 127 HMMLKMLMP-ESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
             ML+ L+  +   K  DA D LA+AVCH ++      + +
Sbjct: 125 AKMLQQLLNIKELPKHFDATDGLAVAVCHFFNGGKAQKQQS 165


>gi|17986615|ref|NP_539249.1| Holliday junction resolvase [Brucella melitensis bv. 1 str. 16M]
 gi|62290576|ref|YP_222369.1| Holliday junction resolvase [Brucella abortus bv. 1 str. 9-941]
 gi|82700492|ref|YP_415066.1| Holliday junction resolvase [Brucella melitensis biovar Abortus
           2308]
 gi|148560343|ref|YP_001259557.1| Holliday junction resolvase [Brucella ovis ATCC 25840]
 gi|161619633|ref|YP_001593520.1| Holliday junction resolvase [Brucella canis ATCC 23365]
 gi|189024794|ref|YP_001935562.1| Holliday junction resolvase [Brucella abortus S19]
 gi|225628273|ref|ZP_03786307.1| crossover junction endodeoxyribonuclease RuvC [Brucella ceti str.
           Cudo]
 gi|225853160|ref|YP_002733393.1| Holliday junction resolvase [Brucella melitensis ATCC 23457]
 gi|237816081|ref|ZP_04595077.1| crossover junction endodeoxyribonuclease RuvC [Brucella abortus
           str. 2308 A]
 gi|239832791|ref|ZP_04681120.1| crossover junction endodeoxyribonuclease RuvC [Ochrobactrum
           intermedium LMG 3301]
 gi|254689872|ref|ZP_05153126.1| Holliday junction resolvase [Brucella abortus bv. 6 str. 870]
 gi|254698023|ref|ZP_05159851.1| Holliday junction resolvase [Brucella abortus bv. 2 str. 86/8/59]
 gi|254700365|ref|ZP_05162193.1| Holliday junction resolvase [Brucella suis bv. 5 str. 513]
 gi|254703483|ref|ZP_05165311.1| Holliday junction resolvase [Brucella suis bv. 3 str. 686]
 gi|254708428|ref|ZP_05170256.1| Holliday junction resolvase [Brucella pinnipedialis M163/99/10]
 gi|254708718|ref|ZP_05170529.1| Holliday junction resolvase [Brucella pinnipedialis B2/94]
 gi|254714565|ref|ZP_05176376.1| Holliday junction resolvase [Brucella ceti M644/93/1]
 gi|254717462|ref|ZP_05179273.1| Holliday junction resolvase [Brucella ceti M13/05/1]
 gi|254719707|ref|ZP_05181518.1| Holliday junction resolvase [Brucella sp. 83/13]
 gi|254730907|ref|ZP_05189485.1| Holliday junction resolvase [Brucella abortus bv. 4 str. 292]
 gi|256030244|ref|ZP_05443858.1| Holliday junction resolvase [Brucella pinnipedialis M292/94/1]
 gi|256045314|ref|ZP_05448208.1| Holliday junction resolvase [Brucella melitensis bv. 1 str. Rev.1]
 gi|256061741|ref|ZP_05451878.1| Holliday junction resolvase [Brucella neotomae 5K33]
 gi|256114272|ref|ZP_05455017.1| Holliday junction resolvase [Brucella melitensis bv. 3 str. Ether]
 gi|256258126|ref|ZP_05463662.1| Holliday junction resolvase [Brucella abortus bv. 9 str. C68]
 gi|256263349|ref|ZP_05465881.1| crossover junction endodeoxyribonuclease ruvC [Brucella melitensis
           bv. 2 str. 63/9]
 gi|256370113|ref|YP_003107624.1| Holliday junction resolvase [Brucella microti CCM 4915]
 gi|260167919|ref|ZP_05754730.1| Holliday junction resolvase [Brucella sp. F5/99]
 gi|260547180|ref|ZP_05822918.1| crossover junction endodeoxyribonuclease ruvC [Brucella abortus
           NCTC 8038]
 gi|260565795|ref|ZP_05836278.1| crossover junction endodeoxyribonuclease ruvC [Brucella melitensis
           bv. 1 str. 16M]
 gi|260568789|ref|ZP_05839257.1| crossover junction endodeoxyribonuclease ruvC [Brucella suis bv. 4
           str. 40]
 gi|260755404|ref|ZP_05867752.1| crossover junction endodeoxyribonuclease ruvC [Brucella abortus bv.
           6 str. 870]
 gi|260758626|ref|ZP_05870974.1| crossover junction endodeoxyribonuclease ruvC [Brucella abortus bv.
           4 str. 292]
 gi|260762458|ref|ZP_05874795.1| crossover junction endodeoxyribonuclease ruvC [Brucella abortus bv.
           2 str. 86/8/59]
 gi|260884419|ref|ZP_05896033.1| crossover junction endodeoxyribonuclease ruvC [Brucella abortus bv.
           9 str. C68]
 gi|261219294|ref|ZP_05933575.1| crossover junction endodeoxyribonuclease ruvC [Brucella ceti
           M13/05/1]
 gi|261315927|ref|ZP_05955124.1| crossover junction endodeoxyribonuclease ruvC [Brucella
           pinnipedialis M163/99/10]
 gi|261316210|ref|ZP_05955407.1| crossover junction endodeoxyribonuclease ruvC [Brucella
           pinnipedialis B2/94]
 gi|261322355|ref|ZP_05961552.1| crossover junction endodeoxyribonuclease ruvC [Brucella ceti
           M644/93/1]
 gi|261325745|ref|ZP_05964942.1| crossover junction endodeoxyribonuclease ruvC [Brucella neotomae
           5K33]
 gi|261750860|ref|ZP_05994569.1| crossover junction endodeoxyribonuclease ruvC [Brucella suis bv. 5
           str. 513]
 gi|261754113|ref|ZP_05997822.1| crossover junction endodeoxyribonuclease ruvC [Brucella suis bv. 3
           str. 686]
 gi|261757358|ref|ZP_06001067.1| crossover junction endodeoxyribonuclease ruvC [Brucella sp. F5/99]
 gi|265984722|ref|ZP_06097457.1| crossover junction endodeoxyribonuclease ruvC [Brucella sp. 83/13]
 gi|265987272|ref|ZP_06099829.1| crossover junction endodeoxyribonuclease ruvC [Brucella
           pinnipedialis M292/94/1]
 gi|265991739|ref|ZP_06104296.1| crossover junction endodeoxyribonuclease ruvC [Brucella melitensis
           bv. 1 str. Rev.1]
 gi|265995576|ref|ZP_06108133.1| crossover junction endodeoxyribonuclease ruvC [Brucella melitensis
           bv. 3 str. Ether]
 gi|294850955|ref|ZP_06791631.1| crossover junction endodeoxyribonuclease RuvC [Brucella sp. NVSL
           07-0026]
 gi|297248975|ref|ZP_06932683.1| crossover junction endodeoxyribonuclease RuvC [Brucella abortus bv.
           5 str. B3196]
 gi|306837834|ref|ZP_07470696.1| crossover junction endodeoxyribonuclease RuvC [Brucella sp. NF
           2653]
 gi|306841423|ref|ZP_07474125.1| crossover junction endodeoxyribonuclease RuvC [Brucella sp. BO2]
 gi|306844696|ref|ZP_07477281.1| crossover junction endodeoxyribonuclease RuvC [Brucella sp. BO1]
 gi|20978747|sp|Q8YIV7|RUVC_BRUME RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|81309381|sp|Q57BH6|RUVC_BRUAB RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|123768482|sp|Q2YRD0|RUVC_BRUA2 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|166231584|sp|A5VS60|RUVC_BRUO2 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|189046058|sp|A9M7K2|RUVC_BRUC2 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|238689393|sp|B2S7E1|RUVC_BRUA1 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|254767463|sp|C0REW7|RUVC_BRUMB RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|17982228|gb|AAL51513.1| crossover junction endodeoxyribonuclease ruvc [Brucella melitensis
           bv. 1 str. 16M]
 gi|62196708|gb|AAX75008.1| RuvC, crossover junction endodeoxyribonuclease [Brucella abortus
           bv. 1 str. 9-941]
 gi|82616593|emb|CAJ11672.1| Crossover junction endodeoxyribonuclease RuvC [Brucella melitensis
           biovar Abortus 2308]
 gi|148371600|gb|ABQ61579.1| crossover junction endodeoxyribonuclease RuvC [Brucella ovis ATCC
           25840]
 gi|161336444|gb|ABX62749.1| crossover junction endodeoxyribonuclease RuvC [Brucella canis ATCC
           23365]
 gi|189020366|gb|ACD73088.1| Crossover junction endodeoxyribonuclease RuvC [Brucella abortus
           S19]
 gi|225616119|gb|EEH13167.1| crossover junction endodeoxyribonuclease RuvC [Brucella ceti str.
           Cudo]
 gi|225641525|gb|ACO01439.1| crossover junction endodeoxyribonuclease RuvC [Brucella melitensis
           ATCC 23457]
 gi|237788744|gb|EEP62956.1| crossover junction endodeoxyribonuclease RuvC [Brucella abortus
           str. 2308 A]
 gi|239825058|gb|EEQ96626.1| crossover junction endodeoxyribonuclease RuvC [Ochrobactrum
           intermedium LMG 3301]
 gi|256000276|gb|ACU48675.1| Holliday junction resolvase [Brucella microti CCM 4915]
 gi|260095545|gb|EEW79423.1| crossover junction endodeoxyribonuclease ruvC [Brucella abortus
           NCTC 8038]
 gi|260151168|gb|EEW86263.1| crossover junction endodeoxyribonuclease ruvC [Brucella melitensis
           bv. 1 str. 16M]
 gi|260154173|gb|EEW89255.1| crossover junction endodeoxyribonuclease ruvC [Brucella suis bv. 4
           str. 40]
 gi|260668944|gb|EEX55884.1| crossover junction endodeoxyribonuclease ruvC [Brucella abortus bv.
           4 str. 292]
 gi|260672884|gb|EEX59705.1| crossover junction endodeoxyribonuclease ruvC [Brucella abortus bv.
           2 str. 86/8/59]
 gi|260675512|gb|EEX62333.1| crossover junction endodeoxyribonuclease ruvC [Brucella abortus bv.
           6 str. 870]
 gi|260873947|gb|EEX81016.1| crossover junction endodeoxyribonuclease ruvC [Brucella abortus bv.
           9 str. C68]
 gi|260924383|gb|EEX90951.1| crossover junction endodeoxyribonuclease ruvC [Brucella ceti
           M13/05/1]
 gi|261295045|gb|EEX98541.1| crossover junction endodeoxyribonuclease ruvC [Brucella ceti
           M644/93/1]
 gi|261295433|gb|EEX98929.1| crossover junction endodeoxyribonuclease ruvC [Brucella
           pinnipedialis B2/94]
 gi|261301725|gb|EEY05222.1| crossover junction endodeoxyribonuclease ruvC [Brucella neotomae
           5K33]
 gi|261304953|gb|EEY08450.1| crossover junction endodeoxyribonuclease ruvC [Brucella
           pinnipedialis M163/99/10]
 gi|261737342|gb|EEY25338.1| crossover junction endodeoxyribonuclease ruvC [Brucella sp. F5/99]
 gi|261740613|gb|EEY28539.1| crossover junction endodeoxyribonuclease ruvC [Brucella suis bv. 5
           str. 513]
 gi|261743866|gb|EEY31792.1| crossover junction endodeoxyribonuclease ruvC [Brucella suis bv. 3
           str. 686]
 gi|262766860|gb|EEZ12478.1| crossover junction endodeoxyribonuclease ruvC [Brucella melitensis
           bv. 3 str. Ether]
 gi|263002695|gb|EEZ15098.1| crossover junction endodeoxyribonuclease ruvC [Brucella melitensis
           bv. 1 str. Rev.1]
 gi|263093348|gb|EEZ17417.1| crossover junction endodeoxyribonuclease ruvC [Brucella melitensis
           bv. 2 str. 63/9]
 gi|264659469|gb|EEZ29730.1| crossover junction endodeoxyribonuclease ruvC [Brucella
           pinnipedialis M292/94/1]
 gi|264663314|gb|EEZ33575.1| crossover junction endodeoxyribonuclease ruvC [Brucella sp. 83/13]
 gi|294821598|gb|EFG38594.1| crossover junction endodeoxyribonuclease RuvC [Brucella sp. NVSL
           07-0026]
 gi|297174108|gb|EFH33465.1| crossover junction endodeoxyribonuclease RuvC [Brucella abortus bv.
           5 str. B3196]
 gi|306274868|gb|EFM56638.1| crossover junction endodeoxyribonuclease RuvC [Brucella sp. BO1]
 gi|306288529|gb|EFM59881.1| crossover junction endodeoxyribonuclease RuvC [Brucella sp. BO2]
 gi|306407073|gb|EFM63290.1| crossover junction endodeoxyribonuclease RuvC [Brucella sp. NF
           2653]
 gi|326409717|gb|ADZ66782.1| Crossover junction endodeoxyribonuclease RuvC [Brucella melitensis
           M28]
 gi|326539424|gb|ADZ87639.1| crossover junction endodeoxyribonuclease RuvC [Brucella melitensis
           M5-90]
          Length = 173

 Score =  197 bits (502), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 106/160 (66%), Positives = 130/160 (81%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M+++IRIIGIDPGLRRTGWGIV+  G++L F+ SGT+ S     LA RLCQL+EGL+ V+
Sbjct: 1   MKETIRIIGIDPGLRRTGWGIVESLGNSLHFIGSGTVTSNAEMDLASRLCQLHEGLSKVL 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             + P EAAVE  FVNKDA ATLKLGQAR IA+L+PA A +PV+EYAPN +KKAVIGVGH
Sbjct: 61  HEFMPHEAAVEHTFVNKDATATLKLGQARGIALLAPAQAGLPVAEYAPNAVKKAVIGVGH 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           G+K+QIHMM+K+LMP + F   DAADALAIA+CHA+H  S
Sbjct: 121 GEKQQIHMMVKVLMPRASFDTSDAADALAIAICHAHHRQS 160


>gi|288802195|ref|ZP_06407635.1| crossover junction endodeoxyribonuclease RuvC [Prevotella
           melaninogenica D18]
 gi|302346585|ref|YP_003814883.1| crossover junction endodeoxyribonuclease RuvC [Prevotella
           melaninogenica ATCC 25845]
 gi|288335162|gb|EFC73597.1| crossover junction endodeoxyribonuclease RuvC [Prevotella
           melaninogenica D18]
 gi|302150436|gb|ADK96697.1| crossover junction endodeoxyribonuclease RuvC [Prevotella
           melaninogenica ATCC 25845]
          Length = 191

 Score =  197 bits (502), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 53/153 (34%), Positives = 81/153 (52%), Gaps = 3/153 (1%)

Query: 8   IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEE 67
           +GIDPG    G+G++ V G+    V  G I     + +  RL +++E +T +I  + P+E
Sbjct: 13  LGIDPGTNVMGYGVLRVCGNKAELVVMGVIDMRREKDVYLRLGRIFERVTGIIDEYLPDE 72

Query: 68  AAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIH 127
            AVE  F  K+  + LKLG+A+ + I +     +P+ EYAP  IK A+ G G   K+Q+ 
Sbjct: 73  VAVEAPFFGKNVQSMLKLGRAQGVVIAAAINHDVPIQEYAPLKIKMAITGNGSASKEQVA 132

Query: 128 MMLKMLMPE---SFFKGKDAADALAIAVCHAYH 157
            ML+ L+           DA DA+A A CH   
Sbjct: 133 GMLQKLLHLRDDQMPHFMDATDAVAAAYCHFLQ 165


>gi|237809452|ref|YP_002893892.1| crossover junction endodeoxyribonuclease RuvC [Tolumonas auensis
           DSM 9187]
 gi|259495696|sp|C4LBN2|RUVC_TOLAT RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|237501713|gb|ACQ94306.1| crossover junction endodeoxyribonuclease RuvC [Tolumonas auensis
           DSM 9187]
          Length = 173

 Score =  197 bits (502), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 63/162 (38%), Positives = 106/162 (65%), Gaps = 2/162 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++      + ++ SG I +   Q L+ +L Q+Y+G++++I  ++P+
Sbjct: 4   ILGIDPGSRITGYGVIRQQAGKVEYLGSGCIRTSGEQ-LSDKLKQIYDGISEIILQFKPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+  + LKLGQAR  AI++   A +PV+EYA   +K++V+G G  DK+Q+
Sbjct: 63  LFAIEQVFMAKNPDSALKLGQARGSAIVAAVNAGLPVAEYAARQVKQSVVGTGAADKEQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
             M+K L+        DAADALA+A+CH++   +   ++A +
Sbjct: 123 QHMVKQLLKLPACPQADAADALAVALCHSHTQQT-LIRMAGK 163


>gi|148258117|ref|YP_001242702.1| Holliday junction resolvase [Bradyrhizobium sp. BTAi1]
 gi|166231582|sp|A5ERK2|RUVC_BRASB RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|146410290|gb|ABQ38796.1| Holliday junction endonuclease RuvC [Bradyrhizobium sp. BTAi1]
          Length = 175

 Score =  197 bits (501), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 89/165 (53%), Positives = 120/165 (72%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           +R ++RIIGIDPGLRRTGWG+++  G+ L +V  G++       LA RL  ++EGL  V+
Sbjct: 6   IRAAVRIIGIDPGLRRTGWGVIESEGNRLIYVGCGSVEPPDDLPLANRLLAIHEGLAKVL 65

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
            +++P EAAVEQ FVNKD VATLKLGQAR IA+L+PA+  I V+EYAPN +KK V+G GH
Sbjct: 66  NDFQPLEAAVEQTFVNKDGVATLKLGQARGIAMLAPAMFGISVAEYAPNQVKKTVVGAGH 125

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
            DK QI +MLK+L+P++     DAADALAIA+ HA+H      ++
Sbjct: 126 ADKGQIAVMLKILLPKAEPPSADAADALAIAITHAHHRQGQALRM 170


>gi|294635833|ref|ZP_06714288.1| crossover junction endodeoxyribonuclease RuvC [Edwardsiella tarda
           ATCC 23685]
 gi|291090805|gb|EFE23366.1| crossover junction endodeoxyribonuclease RuvC [Edwardsiella tarda
           ATCC 23685]
          Length = 173

 Score =  197 bits (501), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 62/156 (39%), Positives = 95/156 (60%), Gaps = 1/156 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I + V   L  RL  +Y G++++I  + P+
Sbjct: 4   ILGIDPGSRITGYGVIRQCGRQLDYLGSGCIRTAVD-DLPTRLKLVYAGVSEIITQFNPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR  AI++     +PV EYA   IK+ V+G G  +K Q+
Sbjct: 63  YFAIEQVFMAKNADSALKLGQARGAAIVAAVNRDLPVFEYAARQIKQTVVGNGGAEKAQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGY 162
             M++ L+        DAADALA+A+ H + + +  
Sbjct: 123 QHMVRSLLKLPANPQADAADALAVAITHCHVSQNAL 158


>gi|209767454|gb|ACI82039.1| Holliday junction nuclease [Escherichia coli]
          Length = 173

 Score =  197 bits (501), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 52/135 (38%), Positives = 83/135 (61%), Gaps = 1/135 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG   TG+G++   G  L ++ SG I + V   L  RL  +Y G+T++I  ++P+
Sbjct: 4   ILGIDPGSCVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR +AI++     +PV EYA   +K+ V+G+G  +K Q+
Sbjct: 63  YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 122

Query: 127 HMMLKMLMPESFFKG 141
             M++ L+       
Sbjct: 123 QHMVRTLLKLPANPQ 137


>gi|237712895|ref|ZP_04543376.1| holliday junction resolvase [Bacteroides sp. D1]
 gi|262409664|ref|ZP_06086204.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides sp.
           2_1_22]
 gi|294643216|ref|ZP_06721043.1| putative crossover junction endodeoxyribonuclease RuvC [Bacteroides
           ovatus SD CC 2a]
 gi|294807169|ref|ZP_06765985.1| putative crossover junction endodeoxyribonuclease RuvC [Bacteroides
           xylanisolvens SD CC 1b]
 gi|229447014|gb|EEO52805.1| holliday junction resolvase [Bacteroides sp. D1]
 gi|262352517|gb|EEZ01617.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides sp.
           2_1_22]
 gi|292641452|gb|EFF59643.1| putative crossover junction endodeoxyribonuclease RuvC [Bacteroides
           ovatus SD CC 2a]
 gi|294445620|gb|EFG14271.1| putative crossover junction endodeoxyribonuclease RuvC [Bacteroides
           xylanisolvens SD CC 1b]
          Length = 188

 Score =  197 bits (501), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 51/172 (29%), Positives = 87/172 (50%), Gaps = 6/172 (3%)

Query: 1   MRKSIR---IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLT 57
           M + ++   I+GIDPG    G+G++ V G     ++ G I      +   +L  ++E + 
Sbjct: 1   MIQPVKEKIILGIDPGTTIMGYGVLRVRGTKPEMIAMGIIDLRKFANHYLKLRHIHERVL 60

Query: 58  DVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIG 117
            +I+++ P+E A+E  F  K+  + LKLG+A+ +A+       IP++EYAP  IK A+ G
Sbjct: 61  SIIESYLPDELAIEAPFFGKNVQSMLKLGRAQGVAMAVALSRDIPITEYAPLKIKMAITG 120

Query: 118 VGHGDKKQIHMMLKMLM---PESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
            G   K+Q+  ML+ ++    +      DA D LA A CH         +  
Sbjct: 121 NGQASKEQVADMLQRMLRFSKDDMPTFMDATDGLAAAYCHFLQMGRPAMEKG 172


>gi|73666641|ref|YP_302657.1| Holliday junction endonuclease RuvC [Ehrlichia canis str. Jake]
 gi|108884828|sp|Q3YT96|RUVC_EHRCJ RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|72393782|gb|AAZ68059.1| Holliday junction endonuclease RuvC [Ehrlichia canis str. Jake]
          Length = 156

 Score =  197 bits (501), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 52/156 (33%), Positives = 100/156 (64%), Gaps = 1/156 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + +IG+DPGL  TGWGI+ +  D +  + +G I +  +++   RL ++++ L +++ +++
Sbjct: 1   MNVIGLDPGLNHTGWGILSIEKD-IKLIGNGVIKTNNKETPGQRLNKIHKELINILNSYQ 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
              A++E+VF+NK+  +++ L  AR + +L+     I V EY+ N +KK++ G GH  K+
Sbjct: 60  INSASMEEVFINKNPRSSISLCYARGVLLLTLNAMNIQVFEYSSNYVKKSITGNGHAKKE 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           Q+H M++ ++   F    D +DA+A+A+CHAY  N+
Sbjct: 120 QVHFMVEKILNVEFKGTYDISDAIAVALCHAYSKNN 155


>gi|218460451|ref|ZP_03500542.1| Holliday junction resolvase [Rhizobium etli Kim 5]
          Length = 169

 Score =  197 bits (501), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 110/166 (66%), Positives = 135/166 (81%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M+ +IRI+GIDPGLRRTGWGI+D  G++L FV+SGT+ S     LA RLCQL++GL +V+
Sbjct: 1   MQNTIRIVGIDPGLRRTGWGIIDTLGNSLRFVASGTVTSDGDMDLASRLCQLHDGLAEVV 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             ++P+EAAVEQ FVNKDAVATLKLGQAR IA+L PA A + VSEYAPN +KKAVIGVGH
Sbjct: 61  HAYKPDEAAVEQTFVNKDAVATLKLGQARGIAMLVPARAGMQVSEYAPNAVKKAVIGVGH 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
           G+K QIHMMLK+LMP+  FKG DAADALAIA+CHA++  S   + A
Sbjct: 121 GEKHQIHMMLKILMPKVEFKGDDAADALAIAICHAHNRGSNRMRQA 166


>gi|163787294|ref|ZP_02181741.1| Holliday junction resolvase [Flavobacteriales bacterium ALC-1]
 gi|159877182|gb|EDP71239.1| Holliday junction resolvase [Flavobacteriales bacterium ALC-1]
          Length = 184

 Score =  197 bits (501), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 54/160 (33%), Positives = 88/160 (55%), Gaps = 1/160 (0%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M K   I+GIDPG    G+G++ V G  + F+    ++         +L  ++E   ++I
Sbjct: 1   MSKEKIILGIDPGTTIMGFGLIKVVGKKMEFMQLNELMLKKYDDHYLKLKLIFERTVELI 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             + P+E A+E  F  K+  + LKLG+A+ +A+ +     +P++EYAP  IK A+ G G+
Sbjct: 61  DTYHPDEIAIEAPFFGKNVQSMLKLGRAQGVAMAAGLSREVPITEYAPKKIKMAITGNGN 120

Query: 121 GDKKQIHMMLK-MLMPESFFKGKDAADALAIAVCHAYHAN 159
             K+Q+  ML+ ML  +   K  D+ D LA AVCH Y+  
Sbjct: 121 ASKEQVAKMLQGMLGLKELPKNLDSMDGLAAAVCHFYNQG 160


>gi|224023778|ref|ZP_03642144.1| hypothetical protein BACCOPRO_00494 [Bacteroides coprophilus DSM
           18228]
 gi|224017000|gb|EEF75012.1| hypothetical protein BACCOPRO_00494 [Bacteroides coprophilus DSM
           18228]
          Length = 189

 Score =  197 bits (501), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 57/165 (34%), Positives = 86/165 (52%), Gaps = 6/165 (3%)

Query: 1   MRKSIR---IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLT 57
           M + ++   I+GIDPG    G+G++ V G     ++ G I          +L  +YE + 
Sbjct: 1   MIQPVKEKIILGIDPGTNIMGYGVLKVTGTRPQVMTLGVIDLRKCSDPYLKLKHIYERVQ 60

Query: 58  DVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIG 117
            VI ++ P+E A+E  F  K+  + LKLG+A+ +AI++     IPV+EYAP  IK A+ G
Sbjct: 61  GVITSFLPDELAIEAPFFGKNVQSMLKLGRAQGVAIVAALCRDIPVTEYAPLKIKMAITG 120

Query: 118 VGHGDKKQIHMMLKMLMPESFF---KGKDAADALAIAVCHAYHAN 159
            G   K+Q+  MLK ++           DA DALA A CH     
Sbjct: 121 NGQASKEQVADMLKRMLHIPASEMGPFMDATDALAAAYCHYLQMG 165


>gi|163845284|ref|YP_001622939.1| Holliday junction resolvase [Brucella suis ATCC 23445]
 gi|189046059|sp|A9WWI1|RUVC_BRUSI RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|163676007|gb|ABY40117.1| crossover junction endodeoxyribonuclease RuvC [Brucella suis ATCC
           23445]
          Length = 173

 Score =  197 bits (501), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 106/160 (66%), Positives = 130/160 (81%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M+++IRIIGIDPGLRRTGWGIV+  G++L F+ SGT+ S     LA RLCQL+EGL+ V+
Sbjct: 1   MKETIRIIGIDPGLRRTGWGIVESLGNSLHFIGSGTVTSNAEMDLASRLCQLHEGLSKVL 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             + P EAAVE  FVNKDA ATLKLGQAR IA+L+PA A +PV+EYAPN +KKAVIGVGH
Sbjct: 61  HEFMPHEAAVEHTFVNKDATATLKLGQARGIALLAPAQAGLPVTEYAPNAVKKAVIGVGH 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           G+K+QIHMM+K+LMP + F   DAADALAIA+CHA+H  S
Sbjct: 121 GEKQQIHMMVKVLMPRASFDTSDAADALAIAICHAHHRQS 160


>gi|50121418|ref|YP_050585.1| Holliday junction resolvase [Pectobacterium atrosepticum SCRI1043]
 gi|81644877|sp|Q6D4A0|RUVC_ERWCT RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|49611944|emb|CAG75393.1| crossover junction endodeoxyribonuclease [Pectobacterium
           atrosepticum SCRI1043]
          Length = 170

 Score =  197 bits (501), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 56/138 (40%), Positives = 86/138 (62%), Gaps = 2/138 (1%)

Query: 5   IRII-GIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           + II GIDPG R TG+GI+   G +L ++ SG I + V   +  RL  +Y G++++I  +
Sbjct: 1   MTIIVGIDPGSRVTGYGIIRQQGRHLTYLGSGCIRTVVD-DMPTRLKLIYAGVSEIITQF 59

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +P+  A+EQVF+ K+  + LKLGQAR +AI++     +PV EYA   +KK V+G G  DK
Sbjct: 60  QPDCMAIEQVFMAKNPDSALKLGQARGVAIVAGVNQDLPVFEYAARLVKKTVVGTGAADK 119

Query: 124 KQIHMMLKMLMPESFFKG 141
           KQ+  M++ L+  S    
Sbjct: 120 KQVQHMVRSLLKLSASPQ 137


>gi|254465647|ref|ZP_05079058.1| crossover junction endodeoxyribonuclease RuvC [Rhodobacterales
           bacterium Y4I]
 gi|206686555|gb|EDZ47037.1| crossover junction endodeoxyribonuclease RuvC [Rhodobacterales
           bacterium Y4I]
          Length = 165

 Score =  197 bits (501), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 77/161 (47%), Positives = 111/161 (68%), Gaps = 1/161 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGLR  GWG+++  G  L  V++G   +     L  RL  L+  +T++I+ + 
Sbjct: 1   MRILGIDPGLRNLGWGVIESRGTRLSHVANGV-CTSDGDDLGERLLSLHNQVTEIIEAFA 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P++AA+EQ FVNKD   TLKLGQAR +A+L+ A A +PV EYAPN +KK V+GVGH +K+
Sbjct: 60  PDQAAIEQTFVNKDGAGTLKLGQARGVALLTLAKAGLPVGEYAPNRVKKTVVGVGHAEKE 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
           Q+  M+K+ +P    K  DAADALAIA+CHAY+  +   ++
Sbjct: 120 QVMHMVKLQLPGCLPKNTDAADALAIAICHAYYRGTQQRQL 160


>gi|160888818|ref|ZP_02069821.1| hypothetical protein BACUNI_01237 [Bacteroides uniformis ATCC 8492]
 gi|270293592|ref|ZP_06199794.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides sp. D20]
 gi|317479439|ref|ZP_07938572.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides sp.
           4_1_36]
 gi|156861717|gb|EDO55148.1| hypothetical protein BACUNI_01237 [Bacteroides uniformis ATCC 8492]
 gi|270275059|gb|EFA20919.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides sp. D20]
 gi|316904405|gb|EFV26226.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides sp.
           4_1_36]
          Length = 189

 Score =  197 bits (501), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 53/165 (32%), Positives = 87/165 (52%), Gaps = 6/165 (3%)

Query: 1   MRKSIR---IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLT 57
           M + ++   I+GIDPG    G+G++ VAG     ++ G I          +L  ++E + 
Sbjct: 1   MIQPVKEKIILGIDPGTTIMGYGVLRVAGVKPEMIAMGIIDLRKFGDHYLKLRHIHERVL 60

Query: 58  DVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIG 117
            +I+++ P+E A+E  F  K+  + LKLG+A+ +A+ +     IP++EYAP  IK A+ G
Sbjct: 61  SIIESYLPDELAIEAPFFGKNVQSMLKLGRAQGVAMAAALSRDIPITEYAPLKIKMAITG 120

Query: 118 VGHGDKKQIHMMLKMLM---PESFFKGKDAADALAIAVCHAYHAN 159
            G   K+Q+  ML+ ++    E      DA D LA A CH     
Sbjct: 121 NGQASKEQVADMLQRMLHFPKEDMPTFMDATDGLAAAYCHFLQMG 165


>gi|253688205|ref|YP_003017395.1| crossover junction endodeoxyribonuclease RuvC [Pectobacterium
           carotovorum subsp. carotovorum PC1]
 gi|259495690|sp|C6DFF0|RUVC_PECCP RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|251754783|gb|ACT12859.1| crossover junction endodeoxyribonuclease RuvC [Pectobacterium
           carotovorum subsp. carotovorum PC1]
          Length = 173

 Score =  197 bits (501), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 56/138 (40%), Positives = 86/138 (62%), Gaps = 2/138 (1%)

Query: 5   IRII-GIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           + II GIDPG R TG+GI+   G +L ++ SG I + V   +  RL  +Y G++++I  +
Sbjct: 1   MTIIVGIDPGSRVTGYGIIRQQGRHLTYLGSGCIRTVVD-DMPTRLKLIYAGVSEIITQF 59

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RP+  A+EQVF+ K+  + LKLGQAR +AI++     +PV EYA   +K+ V+G G  DK
Sbjct: 60  RPDCMAIEQVFMAKNPDSALKLGQARGVAIVAGVNQDLPVFEYAARLVKQTVVGTGAADK 119

Query: 124 KQIHMMLKMLMPESFFKG 141
           KQ+  M++ L+  S    
Sbjct: 120 KQVQHMVRSLLKLSASPQ 137


>gi|49474678|ref|YP_032720.1| Holliday junction resolvase [Bartonella quintana str. Toulouse]
 gi|81646801|sp|Q6FYP4|RUVC_BARQU RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|49240182|emb|CAF26648.1| Holliday junction nuclease ruvC [Bartonella quintana str. Toulouse]
          Length = 169

 Score =  197 bits (501), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 104/163 (63%), Positives = 132/163 (80%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M ++IRIIGIDPGLRRTGWG++D +G+ L FV++GT+ S  R  LA RLCQLY+GL+D++
Sbjct: 1   MAETIRIIGIDPGLRRTGWGVIDFSGNRLQFVAAGTLSSDARCDLASRLCQLYKGLSDIL 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             + P EAAVE VFVNKDA ATLKLGQARAIA+L+PA A +PV EYAPN +KK+VIGVGH
Sbjct: 61  HQFMPHEAAVEHVFVNKDATATLKLGQARAIALLAPAQANLPVFEYAPNKVKKSVIGVGH 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYY 163
           G K+QIHMM+K+L+P + F   DAADALA+A+CH+ H  S  +
Sbjct: 121 GAKEQIHMMVKVLLPRAEFDSSDAADALALALCHSTHRTSASH 163


>gi|83312318|ref|YP_422582.1| Holliday junction resolvase [Magnetospirillum magneticum AMB-1]
 gi|123740436|sp|Q2W2A2|RUVC_MAGMM RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|82947159|dbj|BAE52023.1| Holliday junction resolvasome, endonuclease subunit
           [Magnetospirillum magneticum AMB-1]
          Length = 166

 Score =  197 bits (501), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 75/156 (48%), Positives = 107/156 (68%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+G+DPGLR TGWGI+D   + L  V+ G I      +LA RL QL++G+  VI ++ 
Sbjct: 1   MRILGLDPGLRNTGWGIIDAVDNRLRHVADGVIRPDASAALAERLVQLHDGIMAVIADFS 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+EAAVE+ FVN +  +TLKLGQAR + +L PA + +PV EYA   +K++V+G G   K+
Sbjct: 61  PDEAAVEETFVNMNPASTLKLGQARGVVLLVPAKSGLPVGEYAATLVKQSVVGTGRAAKE 120

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           Q+ MM+K L+P       DAADALA+A+CHA+H  +
Sbjct: 121 QVGMMVKTLLPGCLAATADAADALAVAICHAHHRGT 156


>gi|313203724|ref|YP_004042381.1| crossover junction endodeoxyribonuclease ruvc [Paludibacter
           propionicigenes WB4]
 gi|312443040|gb|ADQ79396.1| crossover junction endodeoxyribonuclease RuvC [Paludibacter
           propionicigenes WB4]
          Length = 198

 Score =  196 bits (500), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 52/169 (30%), Positives = 85/169 (50%), Gaps = 3/169 (1%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M K   I+GIDPG    G+GI+ V+G+    ++ G +      +   +L +++     +I
Sbjct: 1   MIKEHIILGIDPGTTIMGYGILKVSGNKTEMLAMGVLDLKKYSNHYLKLQRVFARTLSLI 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             + P+  A+E  F  K+  + LKLG+A+ +A+ +     +P++EYAP  IK A+ G G 
Sbjct: 61  DEFHPDHLAIEAPFFGKNVQSMLKLGRAQGVAMSAALYRDVPITEYAPLKIKMAITGSGS 120

Query: 121 GDKKQIHMMLKMLMP---ESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
             K+Q+  ML+  +    ES     DA D LA A CH         + A
Sbjct: 121 ASKEQVADMLRRYLKIPQESMLPQLDATDGLAAAYCHFLQLGKPTSEKA 169


>gi|255994630|ref|ZP_05427765.1| crossover junction endodeoxyribonuclease RuvC [Eubacterium saphenum
           ATCC 49989]
 gi|255993343|gb|EEU03432.1| crossover junction endodeoxyribonuclease RuvC [Eubacterium saphenum
           ATCC 49989]
          Length = 159

 Score =  196 bits (500), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 43/136 (31%), Positives = 80/136 (58%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPG    G+G++D  G++   V  G I +   + L  RL ++   L+ +++ +R
Sbjct: 1   MRILGIDPGYAIMGYGLIDKIGNSFKPVDYGVIKTKAGEPLPERLLKIRMELSSIVEKYR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+E AVE++F N ++   + + ++R +A++  A+  I V+EY P  +K+ V+G G   K 
Sbjct: 61  PDEMAVEELFFNTNSKTVIHVAESRGVALVEGAVRGINVNEYTPLQVKQGVVGYGRAQKV 120

Query: 125 QIHMMLKMLMPESFFK 140
           Q+  M+K+L+      
Sbjct: 121 QVMQMVKVLLNLESVP 136


>gi|261821378|ref|YP_003259484.1| Holliday junction resolvase [Pectobacterium wasabiae WPP163]
 gi|261605391|gb|ACX87877.1| crossover junction endodeoxyribonuclease RuvC [Pectobacterium
           wasabiae WPP163]
          Length = 173

 Score =  196 bits (500), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 56/138 (40%), Positives = 85/138 (61%), Gaps = 2/138 (1%)

Query: 5   IRII-GIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           + II GIDPG R TG+GI+   G  L ++ SG I + V   +  RL  +Y G++++I  +
Sbjct: 1   MTIIVGIDPGSRVTGYGIIRQQGRQLTYLGSGCIRTVVD-DMPTRLKLIYAGVSEIITQF 59

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RP+  A+EQVF+ K+  + LKLGQAR +AI++     +PV EYA   +K+ V+G G  DK
Sbjct: 60  RPDCMAIEQVFMAKNPDSALKLGQARGVAIVAGVNQDLPVFEYAARLVKQTVVGTGAADK 119

Query: 124 KQIHMMLKMLMPESFFKG 141
           KQ+  M++ L+  S    
Sbjct: 120 KQVQHMVRSLLKLSASPQ 137


>gi|220904014|ref|YP_002479326.1| Holliday junction resolvase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219868313|gb|ACL48648.1| crossover junction endodeoxyribonuclease RuvC [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 173

 Score =  196 bits (500), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 58/154 (37%), Positives = 96/154 (62%), Gaps = 2/154 (1%)

Query: 4   SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVS-CVRQSLAFRLCQLYEGLTDVIKN 62
            + ++GIDPG +RTGWG+V      L  V  G + +    ++ + RL  +Y  L+ V+  
Sbjct: 9   PVTVMGIDPGSQRTGWGVVREVSGVLQLVDCGVVRTASAGKAFSDRLACIYHELSTVLSR 68

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
            +PEEAA+EQVF  ++A + LKLGQAR +A+ + A   + +S+Y P  +KK+++G G  +
Sbjct: 69  LKPEEAAIEQVFTAQNAASALKLGQARGVAVAACAAHGLSISDYEPTLVKKSLVGTGRAE 128

Query: 123 KKQIHMMLKMLMP-ESFFKGKDAADALAIAVCHA 155
           K+Q+  M++ L+  ++     D +DALA+AVCH 
Sbjct: 129 KEQVAFMVQRLLNVKNASWSLDTSDALAVAVCHL 162


>gi|91978631|ref|YP_571290.1| Holliday junction resolvase [Rhodopseudomonas palustris BisB5]
 gi|91685087|gb|ABE41389.1| Holliday junction endonuclease RuvC [Rhodopseudomonas palustris
           BisB5]
          Length = 232

 Score =  196 bits (500), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 88/161 (54%), Positives = 117/161 (72%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           +R ++RI+GIDPGLRRTGWG+VD  G+ L FV  G++       LA RL  ++ GL+ V+
Sbjct: 64  IRTAVRILGIDPGLRRTGWGVVDSDGNRLVFVGCGSVEPKNTLPLAERLLAIHHGLSRVL 123

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
            ++ P EAAVEQ FVNKD  ATLKLGQAR +A+L+PA+  + V+EYAPN +KK V+G GH
Sbjct: 124 TDYAPAEAAVEQTFVNKDGAATLKLGQARGVAMLAPAMRGLLVAEYAPNLVKKTVVGAGH 183

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSG 161
            DK QI MMLK+L+P++     DAADALA+A+ HA+H  S 
Sbjct: 184 ADKTQIQMMLKILLPKADPHSADAADALAVAITHAHHRVSA 224


>gi|259417391|ref|ZP_05741310.1| crossover junction endodeoxyribonuclease RuvC [Silicibacter sp.
           TrichCH4B]
 gi|259346297|gb|EEW58111.1| crossover junction endodeoxyribonuclease RuvC [Silicibacter sp.
           TrichCH4B]
          Length = 188

 Score =  196 bits (500), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 78/163 (47%), Positives = 111/163 (68%), Gaps = 1/163 (0%)

Query: 3   KSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
             +RI+GIDPGLR  GWG+++  G  L  V++G   S     L  RL  L+  +T++I  
Sbjct: 22  SEMRILGIDPGLRTLGWGVIESNGARLSHVANGLCHSD-GDDLGERLLSLHNQVTEIIDA 80

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
           ++P++AA+EQ FVNKD   TLKLGQAR +A+L+ A A +P  EYAPN +KK V+GVGH +
Sbjct: 81  YQPDQAAIEQTFVNKDGAGTLKLGQARGVALLTLAKAGLPTGEYAPNRVKKTVVGVGHAE 140

Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
           K+Q+  M+K+ +P    +G DAADALAIA+CHAY+  S   ++
Sbjct: 141 KEQVLHMVKLQLPGCAPRGADAADALAIAICHAYYGGSNQRRL 183


>gi|255010743|ref|ZP_05282869.1| Holliday junction resolvase [Bacteroides fragilis 3_1_12]
 gi|313148549|ref|ZP_07810742.1| holliday junction resolvase [Bacteroides fragilis 3_1_12]
 gi|313137316|gb|EFR54676.1| holliday junction resolvase [Bacteroides fragilis 3_1_12]
          Length = 188

 Score =  196 bits (500), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 52/165 (31%), Positives = 86/165 (52%), Gaps = 6/165 (3%)

Query: 1   MRKSIR---IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLT 57
           M + ++   I+GIDPG    G+G++ V G     ++ G I          +L  ++E + 
Sbjct: 1   MIQPVKEKIILGIDPGTTIMGYGVLRVRGTKPEMIAMGIIDLRKFGDHYLKLRHIHERVL 60

Query: 58  DVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIG 117
            +I+++ P+E A+E  F  K+  + LKLG+A+ +A+ +     IP++EYAP  IK A+ G
Sbjct: 61  SIIESYLPDELAIEAPFFGKNVQSMLKLGRAQGVAMAAALSRDIPITEYAPLKIKMAITG 120

Query: 118 VGHGDKKQIHMMLKMLM---PESFFKGKDAADALAIAVCHAYHAN 159
            G   K+Q+  ML+ ++    E      DA D LA A CH     
Sbjct: 121 NGQASKEQVADMLQRMLHFAKEDMPVFMDATDGLAAAYCHFLQMG 165


>gi|290475276|ref|YP_003468164.1| Holliday junction nuclease [Xenorhabdus bovienii SS-2004]
 gi|289174597|emb|CBJ81391.1| Holliday junction nuclease [Xenorhabdus bovienii SS-2004]
          Length = 173

 Score =  196 bits (500), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 55/135 (40%), Positives = 86/135 (63%), Gaps = 1/135 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I + V   L  RL ++Y G+T++I  +RP+
Sbjct: 4   ILGIDPGSRVTGYGVIRQQGRQLIYIGSGCIRTKVD-DLPNRLQRIYAGITEIIIQFRPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQ+F+ K+A + LKLGQAR +AI++ A   IPV EYA   +K+ V+G G  +K Q+
Sbjct: 63  VFAIEQIFMAKNADSALKLGQARGVAIVAAANESIPVFEYAARQVKQTVVGTGAAEKSQV 122

Query: 127 HMMLKMLMPESFFKG 141
             M++ ++  S    
Sbjct: 123 QHMVRSMLKLSANPQ 137


>gi|294626864|ref|ZP_06705456.1| Holliday junction resolvase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|294665403|ref|ZP_06730691.1| Holliday junction resolvase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292598878|gb|EFF43023.1| Holliday junction resolvase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292604814|gb|EFF48177.1| Holliday junction resolvase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 174

 Score =  196 bits (500), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 62/157 (39%), Positives = 95/157 (60%), Gaps = 1/157 (0%)

Query: 6   RIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           RI+GIDPG +RTG GI+D+  G     V    ++       + RL +L +GL ++I+ +R
Sbjct: 3   RILGIDPGSQRTGIGIIDIDEGGRTRHVHHAPLMLLGEGDFSQRLKRLLQGLGELIEIYR 62

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+E A+E+VF+ K A + LKLG AR  AI +  +  +PV EYA   IK A++G G  DK 
Sbjct: 63  PDEVAIEKVFMGKSAASALKLGHARGAAICAVVMRDLPVHEYAAKEIKLALVGKGGADKV 122

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSG 161
           Q+  M+ +++  +     DAADALA+A+ HA+   + 
Sbjct: 123 QVQHMVGIMLNLNGKLQPDAADALAVAITHAHVRATA 159


>gi|255319284|ref|ZP_05360501.1| crossover junction endodeoxyribonuclease RuvC [Acinetobacter
           radioresistens SK82]
 gi|262379731|ref|ZP_06072887.1| crossover junction endodeoxyribonuclease RuvC [Acinetobacter
           radioresistens SH164]
 gi|255303677|gb|EET82877.1| crossover junction endodeoxyribonuclease RuvC [Acinetobacter
           radioresistens SK82]
 gi|262299188|gb|EEY87101.1| crossover junction endodeoxyribonuclease RuvC [Acinetobacter
           radioresistens SH164]
          Length = 181

 Score =  196 bits (500), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 68/154 (44%), Positives = 99/154 (64%), Gaps = 1/154 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           IIGIDPG R TG+GI++  G+ L F+ +GTI +   Q +  RL +++ G+  ++K   P 
Sbjct: 4   IIGIDPGSRLTGYGIIEKEGNKLRFIDAGTIRTES-QDMPERLKRIFAGIERIVKFHGPT 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           EAAVEQVF+ ++  + LKLGQAR  AI +     + V+EY    IK++V+G G  DK+Q+
Sbjct: 63  EAAVEQVFMAQNPDSALKLGQARGAAIAALVNLDLQVAEYTARQIKQSVVGYGAADKEQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
            MM+  L+  S     DAADALA A+CHA+ + S
Sbjct: 123 QMMVMKLLNLSIRPQADAADALAAAICHAHASGS 156


>gi|218288866|ref|ZP_03493117.1| crossover junction endodeoxyribonuclease RuvC [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218240955|gb|EED08132.1| crossover junction endodeoxyribonuclease RuvC [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 184

 Score =  196 bits (500), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 50/139 (35%), Positives = 85/139 (61%), Gaps = 1/139 (0%)

Query: 3   KSIRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           + +RI+G+DPGL R G+GI++   GD+L  V+ G I +     L  RL  +++ LT++ +
Sbjct: 2   EVLRILGVDPGLARLGFGIIERGPGDSLHHVAHGCIETDADTPLPERLRHIFQQLTELCR 61

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
             RP    VE++F +++A     +GQAR +A+L+ A A + V EY P  +K+AV G G  
Sbjct: 62  THRPAVMVVEELFFSRNATTAFTVGQARGVALLAGAEAGLAVMEYTPMQVKQAVTGYGRA 121

Query: 122 DKKQIHMMLKMLMPESFFK 140
           DK+Q+  M+++L+  +   
Sbjct: 122 DKRQVQEMVRLLLRLTSVP 140


>gi|78048837|ref|YP_365012.1| Holliday junction resolvase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|90146488|sp|Q3BQF1|RUVC_XANC5 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|78037267|emb|CAJ25012.1| holliday junction resolvase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 174

 Score =  196 bits (500), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 60/157 (38%), Positives = 93/157 (59%), Gaps = 1/157 (0%)

Query: 6   RIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           RI+GIDPG +RTG GI+D+        V    ++       + RL +L +GL ++I+ +R
Sbjct: 3   RILGIDPGSQRTGIGIIDIDEDGRSRHVHHAPLMLLGEGDFSQRLKRLLQGLGELIETYR 62

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+E A+E+VF+ K A + LKLG AR  AI +  +  +PV EYA   +K A++G G  DK 
Sbjct: 63  PDEVAIERVFMGKSAASALKLGHARGAAICAVVMRDLPVHEYAATEVKLALVGKGGADKV 122

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSG 161
           Q+  M+ +++        DAADALA+A+ HA+   + 
Sbjct: 123 QVQHMVGIMLNLKGKLQPDAADALAVAITHAHVRATA 159


>gi|332520041|ref|ZP_08396505.1| crossover junction endodeoxyribonuclease RuvC [Lacinutrix algicola
           5H-3-7-4]
 gi|332044600|gb|EGI80794.1| crossover junction endodeoxyribonuclease RuvC [Lacinutrix algicola
           5H-3-7-4]
          Length = 184

 Score =  196 bits (500), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 57/169 (33%), Positives = 87/169 (51%), Gaps = 3/169 (1%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M +   I+GIDPG    G+G++ V    + F+    +          +L  ++E   ++I
Sbjct: 1   MAEEKIILGIDPGTTIMGFGLIKVVNKKMHFLQLNELDLKKYDDHYLKLKLIFERTIELI 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
               P+E A+E  F  K+  + LKLG+A+ +A+ +     IPV+EYAP  IK A+ G G+
Sbjct: 61  DTHHPDEIAIEAPFFGKNVQSMLKLGRAQGVAMAAGLSREIPVTEYAPKKIKMAITGNGN 120

Query: 121 GDKKQIHMMLK-MLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
             K+Q+  ML+ ML  +   K  DA D L  AVCH Y  N G  +I   
Sbjct: 121 ASKEQVAKMLQGMLGIKKLPKNLDAMDGLGAAVCHFY--NQGRVEIGKS 167


>gi|293608303|ref|ZP_06690606.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|299770453|ref|YP_003732479.1| Holliday junction resolvase [Acinetobacter sp. DR1]
 gi|292828876|gb|EFF87238.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|298700541|gb|ADI91106.1| Holliday junction resolvase [Acinetobacter sp. DR1]
 gi|325121963|gb|ADY81486.1| Holliday junction nuclease [Acinetobacter calcoaceticus PHEA-2]
          Length = 181

 Score =  196 bits (500), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 68/154 (44%), Positives = 98/154 (63%), Gaps = 1/154 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           IIGIDPG R TG+GI++  G  L FV +GTI +   Q +  RL +++ G+  ++K   P 
Sbjct: 4   IIGIDPGSRLTGYGIIEKDGSKLRFVDAGTIRTET-QEMPERLKRIFAGVERIVKFHGPT 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           EAAVEQVF+ ++  + LKLGQAR  AI +     + V+EY    IK++V+G G  DK+Q+
Sbjct: 63  EAAVEQVFMAQNPDSALKLGQARGAAIAALVNLDLQVAEYTARQIKQSVVGYGAADKEQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
            MM+  L+  +     DAADALA A+CHA+ + S
Sbjct: 123 QMMVMRLLNLTIKPQSDAADALAAAICHAHASGS 156


>gi|222149651|ref|YP_002550608.1| Holliday junction resolvase [Agrobacterium vitis S4]
 gi|254767454|sp|B9JRI5|RUVC_AGRVS RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|221736633|gb|ACM37596.1| Holliday Junction Resolvase RuvC [Agrobacterium vitis S4]
          Length = 169

 Score =  196 bits (500), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 108/166 (65%), Positives = 136/166 (81%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M  +IRIIGIDPGLRRTGWG+++  G++L F++SGT++S     LA RLCQL++GL DV+
Sbjct: 1   MTSAIRIIGIDPGLRRTGWGVIETLGNSLRFIASGTVMSDGDMDLASRLCQLHDGLADVV 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
              +P+EAAVEQ FVNKDAVATLKLGQAR IA+L PA A +PV+EYAPN +KK+VIGVGH
Sbjct: 61  HLHQPDEAAVEQTFVNKDAVATLKLGQARGIAMLVPARAGLPVAEYAPNAVKKSVIGVGH 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
           GDK+QIHMMLK+LMP++ FKG DAADALAIA+CHA++      + A
Sbjct: 121 GDKQQIHMMLKILMPKAEFKGNDAADALAIAICHAHNRGGERMRRA 166


>gi|114566957|ref|YP_754111.1| hypothetical protein Swol_1433 [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|122318039|sp|Q0AX14|RUVC_SYNWW RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|114337892|gb|ABI68740.1| Holliday junction endonuclease RuvC [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
          Length = 172

 Score =  196 bits (499), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 42/138 (30%), Positives = 84/138 (60%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++++GIDPG   TG+G++      +  ++ GTIV+  +  +  RL Q+Y  L  ++  ++
Sbjct: 1   MKVLGIDPGTATTGYGLIRSEAGRVKAITYGTIVTPAQLEMPLRLYQIYRELQALLMEYK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  AVE++F N+++   + + Q+R + +++ A A IPV+EY P  +K+AV+G G  +KK
Sbjct: 61  PDAVAVEEIFYNRNSKTVITVAQSRGVILMTAAAAGIPVAEYTPLQVKQAVVGYGAAEKK 120

Query: 125 QIHMMLKMLMPESFFKGK 142
           Q+ +M++ ++        
Sbjct: 121 QVQLMVQKILGLQQLPRP 138


>gi|238754859|ref|ZP_04616209.1| Crossover junction endodeoxyribonuclease ruvC [Yersinia ruckeri
           ATCC 29473]
 gi|238706870|gb|EEP99237.1| Crossover junction endodeoxyribonuclease ruvC [Yersinia ruckeri
           ATCC 29473]
          Length = 177

 Score =  196 bits (499), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 53/142 (37%), Positives = 85/142 (59%), Gaps = 2/142 (1%)

Query: 1   MRKSI-RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDV 59
           M+  +  ++GIDPG R TG+G++   G  L ++ SG I + V   +  RL  +Y G+T++
Sbjct: 1   MKIGMAIVLGIDPGSRVTGYGVIRQEGRQLTYLGSGCIRTVVD-DMPTRLKLIYAGVTEI 59

Query: 60  IKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVG 119
           I  + P+  A+EQVF+ K+A + LKLGQAR  AI++     +PVSEYA   +K+ V+G G
Sbjct: 60  ITQFHPDFFAIEQVFMAKNADSALKLGQARGAAIVAAVNLDLPVSEYAARQVKQTVVGTG 119

Query: 120 HGDKKQIHMMLKMLMPESFFKG 141
             +K Q+  M++ L+       
Sbjct: 120 AAEKSQVQHMVRSLLKLPANPQ 141


>gi|226954181|ref|ZP_03824645.1| Holliday junction nuclease [Acinetobacter sp. ATCC 27244]
 gi|294650205|ref|ZP_06727579.1| crossover junction endoribonuclease subunit C [Acinetobacter
           haemolyticus ATCC 19194]
 gi|226835050|gb|EEH67433.1| Holliday junction nuclease [Acinetobacter sp. ATCC 27244]
 gi|292823911|gb|EFF82740.1| crossover junction endoribonuclease subunit C [Acinetobacter
           haemolyticus ATCC 19194]
          Length = 181

 Score =  196 bits (499), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 68/154 (44%), Positives = 99/154 (64%), Gaps = 1/154 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           IIGIDPG R TG+GI++  G+ L FV +GTI +   Q +  RL +++ G+  ++K   P 
Sbjct: 4   IIGIDPGSRLTGYGIIEKDGNKLRFVDAGTIRTET-QEMPERLKRIFAGVERIVKFHGPT 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           EAAVEQVF+ ++  + LKLGQAR  AI +     + V+EY    IK++V+G G  DK+Q+
Sbjct: 63  EAAVEQVFMAQNPDSALKLGQARGAAIAALVNLDLQVAEYTARQIKQSVVGYGAADKEQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
            MM+  L+  +     DAADALA A+CHA+ + S
Sbjct: 123 QMMVMRLLNLTIKPQADAADALAAAICHAHASGS 156


>gi|206900234|ref|YP_002251321.1| crossover junction endodeoxyribonuclease RuvC [Dictyoglomus
           thermophilum H-6-12]
 gi|226698752|sp|B5YFL3|RUVC_DICT6 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|206739337|gb|ACI18395.1| crossover junction endodeoxyribonuclease RuvC [Dictyoglomus
           thermophilum H-6-12]
          Length = 158

 Score =  196 bits (499), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 45/153 (29%), Positives = 82/153 (53%), Gaps = 1/153 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + +IG DPG   TG+GI++   D +  +  G + +    S+  RL  L++ ++ ++  + 
Sbjct: 1   MIVIGFDPGTAITGYGILNKEDDKIAVIEYGALTTPSNWSIGRRLNYLFDQVSSLLDLYN 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+   +E+VF NK+    + +GQA+ + IL+    +  VS   P  +K +V+G G   K 
Sbjct: 61  PDAVVMEEVFFNKNIKTAISIGQAQGVIILAAQQHQREVSILTPLEVKLSVVGYGRATKD 120

Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAY 156
           Q+  M+K ++      K  D ADALA+ + + Y
Sbjct: 121 QVQYMVKEVLKLKDIPKPDDVADALALCISYIY 153


>gi|270307811|ref|YP_003329869.1| crossover junction endodeoxyribonuclease [Dehalococcoides sp. VS]
 gi|270153703|gb|ACZ61541.1| crossover junction endodeoxyribonuclease [Dehalococcoides sp. VS]
          Length = 165

 Score =  196 bits (499), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 60/165 (36%), Positives = 101/165 (61%), Gaps = 3/165 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPG    G+G+++ A D L  +   ++       +  RL  +Y+GL + I+ ++
Sbjct: 1   MRILGIDPGTMVVGYGVIEAADDELSLIGFSSLTPPASAPIPQRLAYIYKGLVEAIELYQ 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+E AVE  F +K+  + L +G+A+A+A+L+ A   + V+EY+P  IK  V G G+  K+
Sbjct: 61  PDEVAVESPFADKNIKSALAIGKAQAVALLAAANHSLSVTEYSPACIKSRVSGSGNASKE 120

Query: 125 QIHMMLKMLMPESFFK-GKDAADALAIAVCHAYHANSGYYKIASQ 168
           QI  M+++L+  +      DAADALA+A+CH  H++  +  I SQ
Sbjct: 121 QIQEMVRLLLNLAEIPQPNDAADALAVAICH--HSHRAFANITSQ 163


>gi|94970645|ref|YP_592693.1| crossover junction endodeoxyribonuclease RuvC [Candidatus
           Koribacter versatilis Ellin345]
 gi|123256221|sp|Q1IKI1|RUVC_ACIBL RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|94552695|gb|ABF42619.1| crossover junction endodeoxyribonuclease RuvC [Candidatus
           Koribacter versatilis Ellin345]
          Length = 166

 Score =  196 bits (499), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 56/158 (35%), Positives = 88/158 (55%), Gaps = 2/158 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGD-NLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++GID G   TG+GIV+      L  + +G +    R  L  +L +++  L  VI+  
Sbjct: 1   MRVMGIDCGSEYTGFGIVESDDRARLHCIVAGAVHLSARDPLENKLAKIFRELCSVIREH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            PE  A+E VF   +A + LKLG  R +A+L+ A   + V+ YAP  +K AV+G G  +K
Sbjct: 61  DPEVVAIEDVFYAVNAKSALKLGHVRGVAMLAVAECGLRVATYAPLAVKSAVVGYGKAEK 120

Query: 124 KQIHMMLKMLMPES-FFKGKDAADALAIAVCHAYHANS 160
            Q+  M+  L+      +  D ADALAIA+CH + + +
Sbjct: 121 CQVQAMVARLLNLPQVPEPADVADALAIAICHLHTSAT 158


>gi|169633696|ref|YP_001707432.1| Holliday junction resolvase [Acinetobacter baumannii SDF]
 gi|169796193|ref|YP_001713986.1| Holliday junction resolvase [Acinetobacter baumannii AYE]
 gi|184157877|ref|YP_001846216.1| Holliday junction resolvase [Acinetobacter baumannii ACICU]
 gi|213157073|ref|YP_002319118.1| crossover junction endodeoxyribonuclease RuvC [Acinetobacter
           baumannii AB0057]
 gi|215483648|ref|YP_002325869.1| crossover junction endodeoxyribonuclease RuvC [Acinetobacter
           baumannii AB307-0294]
 gi|239502245|ref|ZP_04661555.1| Holliday junction resolvase [Acinetobacter baumannii AB900]
 gi|260555244|ref|ZP_05827465.1| crossover junction endodeoxyribonuclease RuvC [Acinetobacter
           baumannii ATCC 19606]
 gi|301347625|ref|ZP_07228366.1| Holliday junction resolvase [Acinetobacter baumannii AB056]
 gi|301510310|ref|ZP_07235547.1| Holliday junction resolvase [Acinetobacter baumannii AB058]
 gi|301596868|ref|ZP_07241876.1| Holliday junction resolvase [Acinetobacter baumannii AB059]
 gi|332850550|ref|ZP_08432826.1| crossover junction endodeoxyribonuclease RuvC [Acinetobacter
           baumannii 6013150]
 gi|332865760|ref|ZP_08436555.1| crossover junction endodeoxyribonuclease RuvC [Acinetobacter
           baumannii 6013113]
 gi|332872519|ref|ZP_08440489.1| crossover junction endodeoxyribonuclease RuvC [Acinetobacter
           baumannii 6014059]
 gi|226725465|sp|B7H3S1|RUVC_ACIB3 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|226725466|sp|B7I4I7|RUVC_ACIB5 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|238685510|sp|A3M4U7|RUVC_ACIBT RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|238688095|sp|B0VCA5|RUVC_ACIBY RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|238688243|sp|B0VR37|RUVC_ACIBS RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|238690999|sp|B2HYY2|RUVC_ACIBC RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|169149120|emb|CAM86997.1| holliday junction nuclease [Acinetobacter baumannii AYE]
 gi|169152488|emb|CAP01456.1| holliday junction nuclease [Acinetobacter baumannii]
 gi|183209471|gb|ACC56869.1| Holliday junction resolvasome, endonuclease subunit [Acinetobacter
           baumannii ACICU]
 gi|193077159|gb|ABO11941.2| holliday junction nuclease [Acinetobacter baumannii ATCC 17978]
 gi|213056233|gb|ACJ41135.1| crossover junction endodeoxyribonuclease RuvC [Acinetobacter
           baumannii AB0057]
 gi|213987249|gb|ACJ57548.1| crossover junction endodeoxyribonuclease RuvC [Acinetobacter
           baumannii AB307-0294]
 gi|260411786|gb|EEX05083.1| crossover junction endodeoxyribonuclease RuvC [Acinetobacter
           baumannii ATCC 19606]
 gi|322508194|gb|ADX03648.1| ruvC [Acinetobacter baumannii 1656-2]
 gi|323517282|gb|ADX91663.1| Holliday junction resolvase [Acinetobacter baumannii TCDC-AB0715]
 gi|323517794|gb|ADX92175.1| Holliday junction resolvase [Acinetobacter baumannii TCDC-AB0715]
 gi|332730612|gb|EGJ61926.1| crossover junction endodeoxyribonuclease RuvC [Acinetobacter
           baumannii 6013150]
 gi|332735101|gb|EGJ66185.1| crossover junction endodeoxyribonuclease RuvC [Acinetobacter
           baumannii 6013113]
 gi|332739325|gb|EGJ70182.1| crossover junction endodeoxyribonuclease RuvC [Acinetobacter
           baumannii 6014059]
          Length = 181

 Score =  196 bits (499), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 68/154 (44%), Positives = 98/154 (63%), Gaps = 1/154 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           IIGIDPG R TG+GI++  G  L FV +GTI +   Q +  RL +++ G+  ++K   P 
Sbjct: 4   IIGIDPGSRLTGYGIIEKDGSKLRFVDAGTIRTET-QEMPERLKRIFAGVERIVKFHGPT 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           EAAVEQVF+ ++  + LKLGQAR  AI +     + V+EY    IK++V+G G  DK+Q+
Sbjct: 63  EAAVEQVFMAQNPDSALKLGQARGAAIAALVNLDLQVAEYTARQIKQSVVGYGAADKEQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
            MM+  L+  +     DAADALA A+CHA+ + S
Sbjct: 123 QMMVMRLLNLTIKPQADAADALAAAICHAHASGS 156


>gi|262278863|ref|ZP_06056648.1| crossover junction endodeoxyribonuclease RuvC [Acinetobacter
           calcoaceticus RUH2202]
 gi|262259214|gb|EEY77947.1| crossover junction endodeoxyribonuclease RuvC [Acinetobacter
           calcoaceticus RUH2202]
          Length = 181

 Score =  196 bits (499), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 66/154 (42%), Positives = 98/154 (63%), Gaps = 1/154 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           IIGIDPG R TG+GI++  G  L F+ +GTI +  +  +  RL +++ G+  ++K   P 
Sbjct: 4   IIGIDPGSRLTGYGIIEKDGSKLRFIDAGTIRTETK-EMPERLKRIFAGIERIVKFHGPT 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           EAAVEQVF+ ++  + LKLGQAR  AI +     + V+EY    IK++V+G G  DK+Q+
Sbjct: 63  EAAVEQVFMAQNPDSALKLGQARGAAIAALVNLDLQVAEYTARQIKQSVVGYGAADKEQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
            MM+  L+  +     DAADALA A+CHA+ + S
Sbjct: 123 QMMVMRLLNLTIKPQADAADALAAAICHAHASGS 156


>gi|227111609|ref|ZP_03825265.1| Holliday junction resolvase [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 173

 Score =  196 bits (499), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 56/138 (40%), Positives = 86/138 (62%), Gaps = 2/138 (1%)

Query: 5   IRII-GIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           + II GIDPG R TG+GI+   G +L ++ SG I + V   +  RL  +Y G++++I  +
Sbjct: 1   MTIIVGIDPGSRVTGYGIIRQQGRHLTYLGSGCIRTVVD-DMPTRLKLIYAGVSEIITQF 59

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RP+  A+EQVF+ K+  + LKLGQAR +AI++     +PV EYA   +K+ V+G G  DK
Sbjct: 60  RPDCMAIEQVFMAKNPDSALKLGQARGVAIVAGVNQDLPVFEYAARLVKQTVVGTGAADK 119

Query: 124 KQIHMMLKMLMPESFFKG 141
           KQ+  M++ L+  S    
Sbjct: 120 KQVQHMVRSLLKLSASPQ 137


>gi|74311807|ref|YP_310226.1| Holliday junction resolvase [Shigella sonnei Ss046]
 gi|110287674|sp|Q3Z2M1|RUVC_SHISS RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|73855284|gb|AAZ87991.1| Holliday junction nuclease [Shigella sonnei Ss046]
 gi|323165013|gb|EFZ50803.1| crossover junction endodeoxyribonuclease RuvC [Shigella sonnei 53G]
          Length = 173

 Score =  196 bits (499), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 52/135 (38%), Positives = 83/135 (61%), Gaps = 1/135 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R  G+G++   G  L ++ SG I + V   L  RL  +Y G+T++I  ++P+
Sbjct: 4   ILGIDPGSRVIGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR +AI++     +PV EYA   +K+ V+G+G  +K Q+
Sbjct: 63  YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 122

Query: 127 HMMLKMLMPESFFKG 141
             M++ L+       
Sbjct: 123 QHMVRTLLKLPANPQ 137


>gi|21243876|ref|NP_643458.1| Holliday junction resolvase [Xanthomonas axonopodis pv. citri str.
           306]
 gi|24638205|sp|Q8PHU9|RUVC_XANAC RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|21109478|gb|AAM37994.1| holliday junction resolvase [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 174

 Score =  196 bits (499), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 62/157 (39%), Positives = 95/157 (60%), Gaps = 1/157 (0%)

Query: 6   RIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           RI+GIDPG +RTG GI+D+  G     V    ++       + RL +L +GL ++I+ +R
Sbjct: 3   RILGIDPGSQRTGIGIIDIDEGGRSRHVHHAPLMLLGEGDFSQRLKRLLQGLGELIEIYR 62

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+E A+E+VF+ K A + LKLG AR  AI +  +  +PV EYA   IK A++G G  DK 
Sbjct: 63  PDEVAIEKVFMGKSAASALKLGHARGAAICAVVMRDLPVHEYAAKEIKLALVGKGGADKV 122

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSG 161
           Q+  M+ +++  +     DAADALA+A+ HA+   + 
Sbjct: 123 QVQHMVGIMLNLNGKLQPDAADALAVAITHAHVRATA 159


>gi|260431116|ref|ZP_05785087.1| crossover junction endodeoxyribonuclease RuvC [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260414944|gb|EEX08203.1| crossover junction endodeoxyribonuclease RuvC [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 165

 Score =  196 bits (499), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 79/161 (49%), Positives = 110/161 (68%), Gaps = 1/161 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGLR  GWG+++  G  L  V++G   S     L  RL  L+  + +VI   +
Sbjct: 1   MRILGIDPGLRTLGWGVIESHGSRLSHVANGLCKSD-GDDLGERLLSLHNQIVEVIAEHQ 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P++AA+EQ FVNKD   TLKLGQAR +A+L+ A A +PV EYAPN +KK V+GVGH +K+
Sbjct: 60  PDQAAIEQTFVNKDGAGTLKLGQARGVALLTLAQAGLPVGEYAPNRVKKTVVGVGHAEKE 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
           Q+  M+K+ +P    KG DAADALAIA+CHA++  +   +I
Sbjct: 120 QVLHMVKLQLPGCQPKGADAADALAIAICHAFYGATPQARI 160


>gi|319941757|ref|ZP_08016079.1| crossover junction endodeoxyribonuclease RuvC [Sutterella
           wadsworthensis 3_1_45B]
 gi|319804690|gb|EFW01557.1| crossover junction endodeoxyribonuclease RuvC [Sutterella
           wadsworthensis 3_1_45B]
          Length = 201

 Score =  196 bits (499), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 66/153 (43%), Positives = 90/153 (58%), Gaps = 1/153 (0%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M  ++RI+G+DPGL  TGWGI+D  G    +V+SG       ++ A RL  +   +  VI
Sbjct: 1   MAAAVRILGLDPGLNHTGWGIIDTTGAKSIWVASGVFDIPKGET-AARLAHIAREIEAVI 59

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
           K   P  AA E+VFVN +  +TL LG AR  AI + +LA + V E+ P+ IK+AV G G 
Sbjct: 60  KTHLPTVAACERVFVNVNPQSTLLLGHARGAAICAASLAGLAVEEFTPSEIKQAVTGSGS 119

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVC 153
            DKK I  M++ L+P       D ADALA A+C
Sbjct: 120 ADKKMIQAMVERLLPIPHHPRTDEADALACALC 152


>gi|227329530|ref|ZP_03833554.1| Holliday junction resolvase [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 173

 Score =  195 bits (498), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 68/165 (41%), Positives = 103/165 (62%), Gaps = 2/165 (1%)

Query: 5   IRII-GIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           + II GIDPG R TG+GI+   G +L ++ SG I + V   +  RL  +Y G++++I  +
Sbjct: 1   MTIIVGIDPGSRVTGYGIIRQQGRHLTYLGSGCIRTVVD-DMPTRLKLIYAGVSEIITQF 59

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RP+  A+EQVF+ K+  + LKLGQAR +AI++     +PV EYA   +K+ V+G G  DK
Sbjct: 60  RPDCMAIEQVFMAKNPDSALKLGQARGVAIVAGVNQDLPVFEYAARLVKQTVVGTGAADK 119

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
           KQ+  M++ L+  S     DAADALAIA+ H + + S     A++
Sbjct: 120 KQVQHMVRSLLKLSASPQADAADALAIAITHCHFSQSLLRTAAAK 164


>gi|54308307|ref|YP_129327.1| Holliday junction resolvase [Photobacterium profundum SS9]
 gi|90411662|ref|ZP_01219672.1| Holliday junction resolvase [Photobacterium profundum 3TCK]
 gi|81615323|sp|Q6LT51|RUVC_PHOPR RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|46912735|emb|CAG19525.1| putative crossover junctionendodeoxyribonuclease RuvC
           [Photobacterium profundum SS9]
 gi|90327552|gb|EAS43905.1| Holliday junction resolvase [Photobacterium profundum 3TCK]
          Length = 173

 Score =  195 bits (498), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 67/154 (43%), Positives = 101/154 (65%), Gaps = 1/154 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G NL ++ SG I +   + +  RL Q+Y G+++VI  ++P+
Sbjct: 4   ILGIDPGSRITGYGVIRQVGRNLEYLGSGCIRTSA-EDIPGRLKQIYAGVSEVITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+E+VF+ K+A + LKLGQAR  AI++   A +PVSEYA   IK+AV+G G  DK Q+
Sbjct: 63  TFAIEEVFMGKNASSALKLGQARGSAIVAAVNADLPVSEYAARLIKQAVVGTGAADKAQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
             M+  ++        DAADALA+A+CHA+   +
Sbjct: 123 QHMVCSVLKLPGKPQADAADALAVAICHAHTHKT 156


>gi|218130384|ref|ZP_03459188.1| hypothetical protein BACEGG_01973 [Bacteroides eggerthii DSM 20697]
 gi|317473845|ref|ZP_07933125.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides
           eggerthii 1_2_48FAA]
 gi|217987385|gb|EEC53715.1| hypothetical protein BACEGG_01973 [Bacteroides eggerthii DSM 20697]
 gi|316909922|gb|EFV31596.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides
           eggerthii 1_2_48FAA]
          Length = 189

 Score =  195 bits (498), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 53/172 (30%), Positives = 88/172 (51%), Gaps = 6/172 (3%)

Query: 1   MRKSIR---IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLT 57
           M + ++   I+GIDPG    G+G++ VAG     ++ G I          +L  ++E + 
Sbjct: 1   MIQPVKEKIILGIDPGTTIMGYGVLRVAGVKPEMIAMGIIDLRKFGDHYLKLRHIHERVL 60

Query: 58  DVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIG 117
            +I+++ P+E A+E  F  K+  + LKLG+A+ +A+ +     IP++EYAP  IK A+ G
Sbjct: 61  SIIESYLPDELAIEAPFFGKNVQSMLKLGRAQGVAMAAALSRDIPITEYAPLKIKMAITG 120

Query: 118 VGHGDKKQIHMMLKMLM---PESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
            G   K+Q+  ML+ ++    E      DA D LA A CH         +  
Sbjct: 121 NGQASKEQVADMLQRMLHFPKEEMPVFLDATDGLAAAYCHFLQMGRPAAEKG 172


>gi|254694365|ref|ZP_05156193.1| Holliday junction resolvase [Brucella abortus bv. 3 str. Tulya]
 gi|261214675|ref|ZP_05928956.1| crossover junction endodeoxyribonuclease ruvC [Brucella abortus bv.
           3 str. Tulya]
 gi|260916282|gb|EEX83143.1| crossover junction endodeoxyribonuclease ruvC [Brucella abortus bv.
           3 str. Tulya]
          Length = 173

 Score =  195 bits (498), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 105/160 (65%), Positives = 129/160 (80%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M+++IRIIGIDPGLRRTGWGIV+  G++L F+ SG + S     LA RLCQL+EGL+ V+
Sbjct: 1   MKETIRIIGIDPGLRRTGWGIVESLGNSLHFIGSGAVTSNAEMDLASRLCQLHEGLSKVL 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             + P EAAVE  FVNKDA ATLKLGQAR IA+L+PA A +PV+EYAPN +KKAVIGVGH
Sbjct: 61  HEFMPHEAAVEHTFVNKDATATLKLGQARGIALLAPAQAGLPVAEYAPNAVKKAVIGVGH 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           G+K+QIHMM+K+LMP + F   DAADALAIA+CHA+H  S
Sbjct: 121 GEKQQIHMMVKVLMPRASFDTSDAADALAIAICHAHHRQS 160


>gi|239995980|ref|ZP_04716504.1| Holliday junction resolvase [Alteromonas macleodii ATCC 27126]
          Length = 172

 Score =  195 bits (498), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 68/164 (41%), Positives = 104/164 (63%), Gaps = 2/164 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + I+GIDPG R TG+G++      L +V+SG I       L  RL  ++ G+ D+I+ ++
Sbjct: 1   MVILGIDPGSRITGYGLIARKQGKLVYVASGCIR-VGTADLPSRLANIFTGVGDIIRQYK 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P++ A+EQVF+ K+  + LKLGQAR  AI++   A++PV+EY+   IK++V+G G  DK 
Sbjct: 60  PDQFAIEQVFMAKNPDSALKLGQARGAAIVAATQAQLPVAEYSARQIKQSVVGKGGADKT 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
           Q+  M+K L+  S     DAADALA+A+CHA+   S    +A Q
Sbjct: 120 QVQHMVKHLLNLSGTPQADAADALAVALCHAHTEQS-LINMAGQ 162


>gi|295698522|ref|YP_003603177.1| crossover junction endodeoxyribonuclease RuvC [Candidatus Riesia
           pediculicola USDA]
 gi|291156987|gb|ADD79432.1| crossover junction endodeoxyribonuclease RuvC [Candidatus Riesia
           pediculicola USDA]
          Length = 177

 Score =  195 bits (498), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 55/153 (35%), Positives = 89/153 (58%), Gaps = 1/153 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG   TG+GIV      + ++  G I       +  RL  +Y+G+  +I  +RP+
Sbjct: 4   ILGIDPGSCITGYGIVQSQKKRILYIDGGCIK-NRLADMPNRLKTIYDGVQKIIHKYRPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             AVEQ+FV+K+  + LKL QA+A+AIL+    ++P+ EY+   ++K+V+G G   K+ I
Sbjct: 63  IFAVEQIFVSKNVSSALKLSQAKAVAILAAVKNQLPIFEYSTKKVRKSVVGTGSAKKEHI 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHAN 159
              +  ++  S     D ADALA+A+ H +  N
Sbjct: 123 QYAVHAILKLSSHPQSDIADALAVAIAHIFSEN 155


>gi|50085173|ref|YP_046683.1| Holliday junction resolvase [Acinetobacter sp. ADP1]
 gi|49531149|emb|CAG68861.1| holliday junction nuclease [Acinetobacter sp. ADP1]
          Length = 191

 Score =  195 bits (498), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 67/160 (41%), Positives = 102/160 (63%), Gaps = 2/160 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           IIGIDPG R TG+GI++  G+ L F+ +GTI +   Q +  RL +++ G+  ++K   P 
Sbjct: 14  IIGIDPGSRLTGYGIIEKNGNELRFIDAGTIRTES-QDMPERLKRIFAGVERIVKFHGPT 72

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           +AAVEQVF+ ++  + LKLGQAR  AI +     + V+EY    IK++V+G G  DK+Q+
Sbjct: 73  QAAVEQVFMAQNPDSALKLGQARGAAIAALVNLDLEVAEYTARQIKQSVVGYGAADKEQV 132

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
            MM+  ++  +     DAADALA A+CHA+ + S   K+A
Sbjct: 133 QMMVMRILNLTIKPQSDAADALAAAICHAHASGS-MSKMA 171


>gi|268317947|ref|YP_003291666.1| crossover junction endodeoxyribonuclease RuvC [Rhodothermus marinus
           DSM 4252]
 gi|262335481|gb|ACY49278.1| crossover junction endodeoxyribonuclease RuvC [Rhodothermus marinus
           DSM 4252]
          Length = 191

 Score =  195 bits (498), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 56/156 (35%), Positives = 91/156 (58%), Gaps = 3/156 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++ V G+    ++   I    + +   RL +L+E L  +++ +RP+
Sbjct: 13  ILGIDPGSRHTGYGVLAVEGERARVLAVDVIHLDEQAAHPLRLLRLFEQLGAIVERYRPD 72

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E     ++  + LKLG+A+A A+L+    +IP  EY P  +KKA+ G G+  K+Q+
Sbjct: 73  ECALEMPVYGRNPQSMLKLGRAQAAAMLAVLTRQIPTVEYTPKEVKKALTGRGNATKEQV 132

Query: 127 HMMLKMLMPESFFK---GKDAADALAIAVCHAYHAN 159
             M++ L+           DA+DALA+AVCH  H  
Sbjct: 133 RFMVQALLELPAEAARLALDASDALAVAVCHWQHRT 168


>gi|260550052|ref|ZP_05824266.1| crossover junction endodeoxyribonuclease RuvC [Acinetobacter sp.
           RUH2624]
 gi|260406807|gb|EEX00286.1| crossover junction endodeoxyribonuclease RuvC [Acinetobacter sp.
           RUH2624]
          Length = 181

 Score =  195 bits (498), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 68/154 (44%), Positives = 98/154 (63%), Gaps = 1/154 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           IIGIDPG R TG+GI++  G  L FV +GTI +   Q +  RL +++ G+  ++K   P 
Sbjct: 4   IIGIDPGSRLTGYGIIEKDGSKLRFVDAGTIRTET-QEMPERLKRIFAGVERIVKFHGPT 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           EAAVEQVF+ ++  + LKLGQAR  AI +     + V+EY    IK++V+G G  DK+Q+
Sbjct: 63  EAAVEQVFMAQNPDSALKLGQARGAAIAALVNLDLQVAEYTARQIKQSVVGYGAADKEQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
            MM+  L+  +     DAADALA A+CHA+ + S
Sbjct: 123 QMMVMRLLNLTIKPQADAADALAAAICHAHASGS 156


>gi|209965102|ref|YP_002298017.1| crossover junction endodeoxyribonuclease RuvC [Rhodospirillum
           centenum SW]
 gi|209958568|gb|ACI99204.1| crossover junction endodeoxyribonuclease RuvC [Rhodospirillum
           centenum SW]
          Length = 179

 Score =  195 bits (498), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 77/164 (46%), Positives = 111/164 (67%)

Query: 4   SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
            IRI+G+DPGLR TGWG++DVAG  L  V+ GTI +  +Q L  RL +L++GL +VI  W
Sbjct: 10  PIRILGLDPGLRHTGWGVIDVAGSRLTHVADGTINTDEKQDLPRRLERLHDGLVEVIGVW 69

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RP+E AVE+   N++  +TLKLG AR +A+L  A A + V +Y P  +KK+V+G GH +K
Sbjct: 70  RPDEVAVEETLANRNPQSTLKLGMARGVALLVGARAGLVVEQYLPMIVKKSVVGTGHAEK 129

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
           +Q+  M++ML+P       DAADALA+A+CHA+ A +    +  
Sbjct: 130 EQVQHMVRMLLPGFQRSSADAADALAVAICHAHTAGTNRRVMEG 173


>gi|153875114|ref|ZP_02003051.1| Crossover junction endodeoxyribonuclease ruvC [Beggiatoa sp. PS]
 gi|152068423|gb|EDN66950.1| Crossover junction endodeoxyribonuclease ruvC [Beggiatoa sp. PS]
          Length = 155

 Score =  195 bits (497), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 70/152 (46%), Positives = 105/152 (69%), Gaps = 1/152 (0%)

Query: 6   RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           RI+GIDPG R TG+G+++V    + +++SG I +  + SL  RL ++Y G++ +I+  +P
Sbjct: 5   RILGIDPGSRLTGFGVIEVHRQQVIYITSGCIRTQSK-SLPSRLQEIYAGISQIIEQAQP 63

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
             +AVEQVF+ ++A + LKLGQAR  AI++     + V EYAP  IK+AV+G GH DK Q
Sbjct: 64  TISAVEQVFMYRNADSALKLGQARGAAIVACVQHGLSVYEYAPTQIKQAVVGKGHADKIQ 123

Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYH 157
           +  M+K+L+  S     DAADALA+A+CHA+H
Sbjct: 124 VQHMVKVLLSLSNIPQVDAADALAVALCHAHH 155


>gi|320093779|ref|ZP_08025626.1| crossover junction endoribonuclease subunit C [Actinomyces sp. oral
           taxon 178 str. F0338]
 gi|319979280|gb|EFW10776.1| crossover junction endoribonuclease subunit C [Actinomyces sp. oral
           taxon 178 str. F0338]
          Length = 209

 Score =  195 bits (497), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 51/157 (32%), Positives = 81/157 (51%), Gaps = 2/157 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++GIDPGL R G G++DV        V  G   S    +  FRL  + + +  VI+  
Sbjct: 1   MRVMGIDPGLTRCGLGVIDVDPSRRATLVHVGVARSDKDLATHFRLTAIADAIDAVIERH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RPE  A+E+VF   +  +     Q    A+     A +P++ + P+ +K AV G G+  K
Sbjct: 61  RPEVVAIERVFAQDNLQSVTTTMQVMGAAMACVGRAGLPLAVHTPSEVKSAVSGNGNAGK 120

Query: 124 KQIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHAN 159
            Q+  M+  ++      +  DAAD+LAIA+CHA+   
Sbjct: 121 AQVQTMVARILGLAEAPRPADAADSLAIAICHAWRGT 157


>gi|254510078|ref|ZP_05122145.1| crossover junction endodeoxyribonuclease RuvC [Rhodobacteraceae
           bacterium KLH11]
 gi|221533789|gb|EEE36777.1| crossover junction endodeoxyribonuclease RuvC [Rhodobacteraceae
           bacterium KLH11]
          Length = 165

 Score =  195 bits (497), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 66/137 (48%), Positives = 93/137 (67%), Gaps = 1/137 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGLR  GWG+++  G  L  V++G   S     L  RL  L+  + +VI+  +
Sbjct: 1   MRILGIDPGLRTLGWGVIESYGSRLSHVANGLCKSD-GDDLGERLLSLHNQIVEVIEEHQ 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P++AA+EQ FVNKD   TLKLGQAR +A+L+ A A +PV EYAPN +KK V+GVGH +K+
Sbjct: 60  PDQAAIEQTFVNKDGAGTLKLGQARGVALLTLAQAGLPVGEYAPNRVKKTVVGVGHAEKE 119

Query: 125 QIHMMLKMLMPESFFKG 141
           Q+  M+K+ +P    KG
Sbjct: 120 QVLHMVKLQLPGCQPKG 136


>gi|60682570|ref|YP_212714.1| Holliday junction resolvase [Bacteroides fragilis NCTC 9343]
 gi|161936263|ref|YP_100540.2| Holliday junction resolvase [Bacteroides fragilis YCH46]
 gi|253565051|ref|ZP_04842507.1| Holliday junction resolvase [Bacteroides sp. 3_2_5]
 gi|265765990|ref|ZP_06094031.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides sp.
           2_1_16]
 gi|81314369|sp|Q5LAS7|RUVC_BACFN RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|60494004|emb|CAH08796.1| putative crossover junction endodeoxyribonuclease [Bacteroides
           fragilis NCTC 9343]
 gi|251946516|gb|EES86893.1| Holliday junction resolvase [Bacteroides sp. 3_2_5]
 gi|263253658|gb|EEZ25123.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides sp.
           2_1_16]
 gi|301164046|emb|CBW23602.1| putative crossover junction endodeoxyribonuclease [Bacteroides
           fragilis 638R]
          Length = 188

 Score =  195 bits (497), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 52/165 (31%), Positives = 87/165 (52%), Gaps = 6/165 (3%)

Query: 1   MRKSIR---IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLT 57
           M + ++   I+GIDPG    G+G++ V G     ++ G I      +   +L  ++E + 
Sbjct: 1   MIQPVKEKIILGIDPGTTIMGYGVLRVCGTRPEMIAMGIIDLRKFGNHYLKLRHIHERVL 60

Query: 58  DVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIG 117
            +I+++ P+E A+E  F  K+  + LKLG+A+ +A+ +     IP++EYAP  IK A+ G
Sbjct: 61  SIIESYLPDELAIEAPFFGKNVQSMLKLGRAQGVAMAAALSRDIPITEYAPLKIKMAITG 120

Query: 118 VGHGDKKQIHMMLKMLM---PESFFKGKDAADALAIAVCHAYHAN 159
            G   K+Q+  ML+ ++    E      DA D LA A CH     
Sbjct: 121 NGQASKEQVADMLQRMLHFAKEDMPVFMDATDGLAAAYCHFLQMG 165


>gi|148546487|ref|YP_001266589.1| Holliday junction resolvase [Pseudomonas putida F1]
 gi|166233287|sp|A5VZU5|RUVC_PSEP1 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|148510545|gb|ABQ77405.1| Holliday junction endonuclease RuvC [Pseudomonas putida F1]
 gi|313497566|gb|ADR58932.1| RuvC [Pseudomonas putida BIRD-1]
          Length = 174

 Score =  195 bits (497), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 60/154 (38%), Positives = 96/154 (62%), Gaps = 1/154 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G+V        +V+SG I +     L  RL  ++ G++++I    P 
Sbjct: 4   ILGIDPGSRITGYGVVRQTARGCEYVASGCIRTGSG-ELHERLQIVFRGVSEIIAQHGPV 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
              +E+VF+ ++A + LKLGQAR  AI++ A A + ++EY+   +K+AV G G  +K+Q+
Sbjct: 63  TMGIERVFMARNADSALKLGQARGAAIVAAAEAGLEIAEYSATQVKQAVAGTGGANKEQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
            MM+  L+  +     DA+DALAIA+CHA+  +S
Sbjct: 123 MMMVMHLLKLTQKPQIDASDALAIALCHAHTRSS 156


>gi|309790184|ref|ZP_07684756.1| crossover junction endodeoxyribonuclease RuvC [Oscillochloris
           trichoides DG6]
 gi|308227769|gb|EFO81425.1| crossover junction endodeoxyribonuclease RuvC [Oscillochloris
           trichoides DG6]
          Length = 158

 Score =  195 bits (497), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 46/138 (33%), Positives = 78/138 (56%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R IGIDPG  R GWG+V+  G ++  V  G + +      A RL  LY GL  +++ ++
Sbjct: 1   MRTIGIDPGTARMGWGVVEKQGSDVRLVEFGVLTTPAGMPQAERLHHLYTGLVQILQRYQ 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  AVE++F  K+    + +GQAR + +L+   A + + EY P  +K+A+ G G  DK+
Sbjct: 61  PQAGAVEELFFGKNVNTAITVGQARGVVLLALHQAGLSIHEYKPLVVKQALTGYGGADKR 120

Query: 125 QIHMMLKMLMPESFFKGK 142
           Q+  M+++ +  S     
Sbjct: 121 QMQEMVRITLGLSSIPRP 138


>gi|329961042|ref|ZP_08299321.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides fluxus
           YIT 12057]
 gi|328532328|gb|EGF59132.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides fluxus
           YIT 12057]
          Length = 192

 Score =  195 bits (497), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 52/172 (30%), Positives = 87/172 (50%), Gaps = 6/172 (3%)

Query: 1   MRKSIR---IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLT 57
           M + ++   I+GIDPG    G+G++ V G     ++ G I          +L  ++E + 
Sbjct: 1   MIQPVKEKIILGIDPGTTIMGYGVLRVTGVKPEMIAMGIIDLRKFGDHYLKLRHIHERVL 60

Query: 58  DVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIG 117
            +I+++ P+E A+E  F  K+  + LKLG+A+ +A+ +     IP++EYAP  IK A+ G
Sbjct: 61  SIIESYLPDELAIEAPFFGKNVQSMLKLGRAQGVAMAAALSRDIPITEYAPLKIKMAITG 120

Query: 118 VGHGDKKQIHMMLKMLM---PESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
            G   K+Q+  ML+ ++    E      DA D LA A CH         +  
Sbjct: 121 NGQASKEQVADMLQRMLHFPKEDMPVFMDATDGLAAAYCHFLQMGRPAVEKG 172


>gi|332993890|gb|AEF03945.1| Holliday junction resolvase [Alteromonas sp. SN2]
          Length = 172

 Score =  195 bits (497), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 69/164 (42%), Positives = 102/164 (62%), Gaps = 2/164 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + I+GIDPG R TG+G+++     L +V+SG I       L  RL  +Y G++D+I+ + 
Sbjct: 1   MVILGIDPGSRVTGYGVIERKQGKLVYVASGCIR-VGTADLPSRLANIYTGISDIIRQYN 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P + A+EQVF+ K+  + LKLGQAR  AI++     +PV+EY+   IK+AV+G G  DK 
Sbjct: 60  PAQFAIEQVFMAKNPDSALKLGQARGAAIVAATQGELPVAEYSARQIKQAVVGKGSADKT 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
           Q+  M+K L+  S     DAADALA+A+CHA+   S    +A Q
Sbjct: 120 QVQHMVKHLLSLSGTPQADAADALAVALCHAHTEQS-LINMAGQ 162


>gi|254294769|ref|YP_003060792.1| Holliday junction resolvase [Hirschia baltica ATCC 49814]
 gi|254043300|gb|ACT60095.1| crossover junction endodeoxyribonuclease RuvC [Hirschia baltica
           ATCC 49814]
          Length = 167

 Score =  195 bits (497), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 59/136 (43%), Positives = 89/136 (65%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M K++RI+G+DPGLR TGWGI+D+ G  L +VS G I       ++ RL  +  GL +VI
Sbjct: 1   MSKAVRILGVDPGLRNTGWGIIDMVGPKLLWVSHGVIKPKTSLPMSERLAFIVNGLNEVI 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
           +  +P+EA +E+ FVN +  +TL LGQAR  A+   +LA + V+E+A   +K+ V+G G 
Sbjct: 61  ETHKPDEAGIEETFVNVNPKSTLLLGQARGAAMAGLSLAGLSVAEFAATKVKQCVVGTGA 120

Query: 121 GDKKQIHMMLKMLMPE 136
            DK Q+  M+K L+P+
Sbjct: 121 ADKDQVTFMIKRLLPK 136


>gi|304413289|ref|ZP_07394762.1| endonuclease subunit of Holliday junction resolvasome [Candidatus
           Regiella insecticola LSR1]
 gi|304284132|gb|EFL92525.1| endonuclease subunit of Holliday junction resolvasome [Candidatus
           Regiella insecticola LSR1]
          Length = 176

 Score =  195 bits (497), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 52/132 (39%), Positives = 86/132 (65%), Gaps = 1/132 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + IIGIDPG R TG+G++ + G  L +++SG I +     L  RL  +Y G++++I  ++
Sbjct: 1   MIIIGIDPGSRITGYGVIALKGRQLSYLASGCIRT-GGGPLPTRLKLIYAGVSEIITQFQ 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  A+EQVF+ K+A + LKLGQAR +AI++     + V EYA   +K++V+G G  +KK
Sbjct: 60  PDFFAIEQVFMAKNADSALKLGQARGVAIVAAVNQHLTVFEYAARLVKQSVVGSGAAEKK 119

Query: 125 QIHMMLKMLMPE 136
           Q+  M++ L+  
Sbjct: 120 QVQHMVRCLLNL 131


>gi|26987950|ref|NP_743375.1| Holliday junction resolvase [Pseudomonas putida KT2440]
 gi|37999647|sp|Q88NJ2|RUVC_PSEPK RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|24982662|gb|AAN66839.1|AE016312_10 crossover junction endodeoxyribonuclease RuvC [Pseudomonas putida
           KT2440]
          Length = 174

 Score =  195 bits (497), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 60/154 (38%), Positives = 96/154 (62%), Gaps = 1/154 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G+V        +V+SG I +     L  RL  ++ G++++I    P 
Sbjct: 4   ILGIDPGSRITGYGVVRQTARGCEYVASGCIRTGSG-ELHERLQIVFRGVSEIIAQHGPV 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
              +E+VF+ ++A + LKLGQAR  AI++ A A + ++EY+   +K+AV G G  +K+Q+
Sbjct: 63  TMGIERVFMARNADSALKLGQARGAAIVAAAEAGLEIAEYSATQVKQAVAGTGGANKEQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
            MM+  L+  +     DA+DALAIA+CHA+  +S
Sbjct: 123 MMMVMHLLKLTQKPQIDASDALAIALCHAHTRSS 156


>gi|170723161|ref|YP_001750849.1| Holliday junction resolvase [Pseudomonas putida W619]
 gi|229558762|sp|B1JD72|RUVC_PSEPW RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|169761164|gb|ACA74480.1| crossover junction endodeoxyribonuclease RuvC [Pseudomonas putida
           W619]
          Length = 174

 Score =  195 bits (497), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 58/154 (37%), Positives = 95/154 (61%), Gaps = 1/154 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G+V        +V+SG I +     L  RL  ++ G++++I    P 
Sbjct: 4   ILGIDPGSRITGYGVVRQTARGCEYVASGCIRTGSG-ELHERLQIVFRGVSEIIAQHGPV 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
              +E+VF+ ++  + LKLGQAR  AI++ A A + ++EY+   +K+AV G G  +K+Q+
Sbjct: 63  TMGIERVFMARNPDSALKLGQARGAAIVAAAEAGLEIAEYSATQVKQAVAGTGGANKEQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
            +M+  L+  +     DA+DALAIA+CHA+  +S
Sbjct: 123 MLMVMHLLKLTQKPQIDASDALAIALCHAHTRSS 156


>gi|226226040|ref|YP_002760146.1| Holliday junction endonuclease RuvC [Gemmatimonas aurantiaca T-27]
 gi|226089231|dbj|BAH37676.1| Holliday junction endonuclease RuvC [Gemmatimonas aurantiaca T-27]
          Length = 181

 Score =  195 bits (496), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 47/140 (33%), Positives = 75/140 (53%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M++   ++GIDPG   TG+G+V   G     V  G I +  +  L  RL  ++EG+ ++I
Sbjct: 1   MKQPSLVLGIDPGTAVTGYGVVASDGRATTLVECGVIRTNAKDPLPSRLLDIHEGVRELI 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
              RP+  ++E VF  ++   TL LG AR + +L+   A + + EYAP  IKKA+ G G 
Sbjct: 61  ARHRPDTLSIEDVFFARNVRTTLVLGHARGVILLAGQQAELTIHEYAPTEIKKAITGRGG 120

Query: 121 GDKKQIHMMLKMLMPESFFK 140
             K+Q+  M+  L+      
Sbjct: 121 ATKEQVQYMVARLLHLKHAP 140


>gi|295695625|ref|YP_003588863.1| crossover junction endodeoxyribonuclease RuvC [Bacillus tusciae DSM
           2912]
 gi|295411227|gb|ADG05719.1| crossover junction endodeoxyribonuclease RuvC [Bacillus tusciae DSM
           2912]
          Length = 179

 Score =  195 bits (496), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 44/138 (31%), Positives = 77/138 (55%), Gaps = 1/138 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPG+ R G+G+V   G+ L     G + +     +  RL ++YE + ++++N  
Sbjct: 1   MRVLGIDPGIGRMGYGLVRSQGNRLRTEDYGCVETRPG-PIGERLVRIYEKMQELLQNLN 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  AVEQ+F  ++      +GQAR + +L+   A + V+EY P  +K+AV G G  +K 
Sbjct: 60  PDVVAVEQLFFYRNVTTAFHVGQARGVVLLAARQAEVAVAEYTPMQVKQAVTGYGSAEKG 119

Query: 125 QIHMMLKMLMPESFFKGK 142
           Q+  M+ ML+        
Sbjct: 120 QVQRMVAMLLGLPAPPRP 137


>gi|163850395|ref|YP_001638438.1| crossover junction endodeoxyribonuclease RuvC [Methylobacterium
           extorquens PA1]
 gi|218528955|ref|YP_002419771.1| Holliday junction resolvase [Methylobacterium chloromethanicum CM4]
 gi|226698759|sp|A9W1B1|RUVC_METEP RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|254767477|sp|B7L253|RUVC_METC4 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|163662000|gb|ABY29367.1| crossover junction endodeoxyribonuclease RuvC [Methylobacterium
           extorquens PA1]
 gi|218521258|gb|ACK81843.1| crossover junction endodeoxyribonuclease RuvC [Methylobacterium
           chloromethanicum CM4]
          Length = 189

 Score =  195 bits (496), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 74/140 (52%), Positives = 100/140 (71%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M   +RI+GIDPGLRRTGWG++   G  L +++ G + S     LA RL +L+EGLT ++
Sbjct: 1   MTTDVRILGIDPGLRRTGWGLITARGSKLSYLACGVVTSDGDLPLALRLRELHEGLTRIV 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             + P+E +VE+ FVNKDA ATLKLG ARA+A+L PALA +PV+EYA N +KK V G GH
Sbjct: 61  TTYTPDEVSVEETFVNKDAQATLKLGHARAVALLVPALAGLPVAEYAANLVKKTVAGNGH 120

Query: 121 GDKKQIHMMLKMLMPESFFK 140
            +K QI  M+K L+P++ FK
Sbjct: 121 AEKVQIQAMVKFLLPKAEFK 140


>gi|329956855|ref|ZP_08297423.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides clarus
           YIT 12056]
 gi|328523612|gb|EGF50704.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides clarus
           YIT 12056]
          Length = 189

 Score =  195 bits (496), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 53/165 (32%), Positives = 87/165 (52%), Gaps = 6/165 (3%)

Query: 1   MRKSIR---IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLT 57
           M + ++   I+GIDPG    G+G++ VAG     ++ G I          +L  ++E + 
Sbjct: 1   MIQPVKEKIILGIDPGTTIMGYGVLRVAGVKPEMIAMGIIDLRKFGDHYLKLRHIHERVL 60

Query: 58  DVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIG 117
            +I+++ P+E A+E  F  K+  + LKLG+A+ +A+ +     IP++EYAP  IK A+ G
Sbjct: 61  SIIESYLPDELAIEAPFFGKNVQSMLKLGRAQGVAMAAALSRDIPITEYAPLKIKMAITG 120

Query: 118 VGHGDKKQIHMMLKMLM---PESFFKGKDAADALAIAVCHAYHAN 159
            G   K+Q+  ML+ ++    E      DA D LA A CH     
Sbjct: 121 NGQASKEQVADMLQRMLHFPKEDMPVFMDATDGLAAAYCHFLQMG 165


>gi|167763317|ref|ZP_02435444.1| hypothetical protein BACSTE_01691 [Bacteroides stercoris ATCC
           43183]
 gi|167698611|gb|EDS15190.1| hypothetical protein BACSTE_01691 [Bacteroides stercoris ATCC
           43183]
          Length = 189

 Score =  195 bits (496), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 53/165 (32%), Positives = 87/165 (52%), Gaps = 6/165 (3%)

Query: 1   MRKSIR---IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLT 57
           M + ++   I+GIDPG    G+G++ VAG     ++ G I          +L  ++E + 
Sbjct: 1   MIQPVKEKIILGIDPGTTIMGYGVLRVAGTKPEMIAMGIIDFRKFGDHYLKLRHIHERVL 60

Query: 58  DVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIG 117
            +I+++ P+E A+E  F  K+  + LKLG+A+ +A+ +     IP++EYAP  IK A+ G
Sbjct: 61  GIIESYLPDELAIEAPFFGKNVQSMLKLGRAQGVAMAAALSRDIPITEYAPLKIKMAITG 120

Query: 118 VGHGDKKQIHMMLKMLM---PESFFKGKDAADALAIAVCHAYHAN 159
            G   K+Q+  ML+ ++    E      DA D LA A CH     
Sbjct: 121 NGQASKEQVADMLQRMLHFPKEEMPVFMDATDGLAAAYCHFLQMG 165


>gi|282892420|ref|ZP_06300770.1| hypothetical protein pah_c253o046 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281497822|gb|EFB40183.1| hypothetical protein pah_c253o046 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 164

 Score =  195 bits (496), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 51/157 (32%), Positives = 81/157 (51%), Gaps = 1/157 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++IIGIDPG   TG+GI    G N   +  G I       L+ R   +Y+ +  +++   
Sbjct: 1   MKIIGIDPGTNITGYGIASFDGFNFSAIDYGCIRPPSSLKLSDRYLIIYDSIAHLLEQHT 60

Query: 65  PEEAAVEQVFVNK-DAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            +   VE  F +K +  + +KLG AR   I++    +IPV EY+P  +K A +G GH  K
Sbjct: 61  VDALVVETQFASKANPQSGIKLGMARGAIIIAAKKRQIPVYEYSPTQVKLAAVGYGHASK 120

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
            Q+  M++     +     DAADALA+ +C+ Y   +
Sbjct: 121 HQVQAMIQSQFQLNQLPPPDAADALALTLCYMYSHKN 157


>gi|56697948|ref|YP_168320.1| Holliday junction resolvase [Ruegeria pomeroyi DSS-3]
 gi|81558342|sp|Q5LNT6|RUVC_SILPO RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|56679685|gb|AAV96351.1| crossover junction endodeoxyribonuclease RuvC [Ruegeria pomeroyi
           DSS-3]
          Length = 165

 Score =  195 bits (496), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 67/137 (48%), Positives = 94/137 (68%), Gaps = 1/137 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGLR  GWG+++  G  L  V++G   S     L  RL  L+  + +VI+ +R
Sbjct: 1   MRILGIDPGLRTLGWGVIEQRGSRLSHVANGLCHSD-GDDLGERLLSLHNQIVEVIEEYR 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P++AA+EQ FVNKD   TLKLGQAR +A+L+ A A +PV EYAPN +KK V+GVGH +K+
Sbjct: 60  PDQAAIEQTFVNKDGAGTLKLGQARGVALLTLAQAGLPVGEYAPNRVKKTVVGVGHAEKE 119

Query: 125 QIHMMLKMLMPESFFKG 141
           Q+  M+K+ +P    KG
Sbjct: 120 QVIHMVKLQLPGCLPKG 136


>gi|255035791|ref|YP_003086412.1| crossover junction endodeoxyribonuclease RuvC [Dyadobacter
           fermentans DSM 18053]
 gi|254948547|gb|ACT93247.1| crossover junction endodeoxyribonuclease RuvC [Dyadobacter
           fermentans DSM 18053]
          Length = 174

 Score =  195 bits (496), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 51/145 (35%), Positives = 87/145 (60%), Gaps = 1/145 (0%)

Query: 17  TGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVN 76
            G+G++ V G  +  V  G I      +   +L +++E LT +I+++ P+E A+E  F  
Sbjct: 1   MGYGVISVKGQQISLVQYGVIHLSKYSTHELKLKKIFERLTQLIEDYLPDEMAIEDPFYG 60

Query: 77  KDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPE 136
           K+A + LKLG+A+ +A+ +     IP+ EY+P  +K++V G G+  K+Q+  ML+ ++  
Sbjct: 61  KNAQSMLKLGRAQGVAMAAALARNIPIVEYSPKKVKQSVTGSGNASKEQVAYMLEKILKM 120

Query: 137 SFFK-GKDAADALAIAVCHAYHANS 160
              +   DA D +AIA+CH YHANS
Sbjct: 121 ELSREFMDATDGIAIAICHQYHANS 145


>gi|86751375|ref|YP_487871.1| Holliday junction resolvase [Rhodopseudomonas palustris HaA2]
 gi|86574403|gb|ABD08960.1| Holliday junction endonuclease RuvC [Rhodopseudomonas palustris
           HaA2]
          Length = 198

 Score =  194 bits (495), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 88/158 (55%), Positives = 117/158 (74%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           +R ++RI+GIDPGLRRTGWG+V+  G+ L FV+ G++      +LA RL  ++ GL  V+
Sbjct: 30  IRTAVRILGIDPGLRRTGWGVVESDGNRLVFVACGSVEPKDTLTLAERLLAIHHGLEKVL 89

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             + P EAAVEQ FVNKD  ATLKLGQAR +A+L+PA+  I V+EYAPN +KK V+G GH
Sbjct: 90  AEFAPAEAAVEQTFVNKDGAATLKLGQARGVAMLAPAMHGILVAEYAPNQVKKTVVGAGH 149

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHA 158
            DK QI MMLK+L+P++  +  DAADALAIA+ HA+H 
Sbjct: 150 ADKVQIQMMLKILLPKADPRTADAADALAIAITHAHHR 187


>gi|262276114|ref|ZP_06053923.1| crossover junction endodeoxyribonuclease RuvC [Grimontia hollisae
           CIP 101886]
 gi|262219922|gb|EEY71238.1| crossover junction endodeoxyribonuclease RuvC [Grimontia hollisae
           CIP 101886]
          Length = 173

 Score =  194 bits (495), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 68/154 (44%), Positives = 104/154 (67%), Gaps = 1/154 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G +L ++ SG I +   + LA RL Q+Y G+++VI  ++P+
Sbjct: 4   ILGIDPGSRITGYGVIRHQGSHLEYLGSGCIRTDS-EDLAGRLGQIYAGVSEVITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ ++A + LKLGQAR  AI++   A +PVSEYA   IK++V+G G  DKKQ+
Sbjct: 63  TFAIEQVFMARNADSALKLGQARGSAIVAAVNAGLPVSEYAARLIKQSVVGKGSADKKQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
             M+  ++        DAADALA+A+CHA+  ++
Sbjct: 123 QHMVVHMLKLPSTPQADAADALAVAICHAHTNHT 156


>gi|212693428|ref|ZP_03301556.1| hypothetical protein BACDOR_02944 [Bacteroides dorei DSM 17855]
 gi|237710485|ref|ZP_04540966.1| holliday junction resolvase [Bacteroides sp. 9_1_42FAA]
 gi|237726992|ref|ZP_04557473.1| holliday junction resolvase [Bacteroides sp. D4]
 gi|254884538|ref|ZP_05257248.1| holliday junction resolvase [Bacteroides sp. 4_3_47FAA]
 gi|265756503|ref|ZP_06090709.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides sp.
           3_1_33FAA]
 gi|294778646|ref|ZP_06744068.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides vulgatus
           PC510]
 gi|319640770|ref|ZP_07995483.1| crossover junction endodeoxyribonuclease ruvC [Bacteroides sp.
           3_1_40A]
 gi|212664072|gb|EEB24646.1| hypothetical protein BACDOR_02944 [Bacteroides dorei DSM 17855]
 gi|229433848|gb|EEO43925.1| holliday junction resolvase [Bacteroides dorei 5_1_36/D4]
 gi|229455207|gb|EEO60928.1| holliday junction resolvase [Bacteroides sp. 9_1_42FAA]
 gi|254837331|gb|EET17640.1| holliday junction resolvase [Bacteroides sp. 4_3_47FAA]
 gi|263233691|gb|EEZ19306.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides sp.
           3_1_33FAA]
 gi|294447595|gb|EFG16173.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides vulgatus
           PC510]
 gi|317387582|gb|EFV68448.1| crossover junction endodeoxyribonuclease ruvC [Bacteroides sp.
           3_1_40A]
          Length = 189

 Score =  194 bits (495), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 52/165 (31%), Positives = 85/165 (51%), Gaps = 6/165 (3%)

Query: 1   MRKSIR---IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLT 57
           M + ++   I+GIDPG    G+G++ V G     ++ G I          +L +++E + 
Sbjct: 1   MIQPVKEKIILGIDPGTTIMGYGLLKVVGTKPQVMTMGVIDLRKYGDHYLKLRRIFERVV 60

Query: 58  DVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIG 117
            +I+ + P+E A+E  F  K+  + LKLG+A+ +A+ +     IP++EYAP  IK A+ G
Sbjct: 61  GIIEAYLPDELAIEAPFFGKNVQSMLKLGRAQGVAMAAALSRDIPITEYAPLKIKMAITG 120

Query: 118 VGHGDKKQIHMMLKMLMPESF---FKGKDAADALAIAVCHAYHAN 159
            G   K+Q+  MLK ++           DA D LA A CH     
Sbjct: 121 NGQASKEQVADMLKRMLHIPESDMLPFMDATDGLAAAYCHYLQMG 165


>gi|330445531|ref|ZP_08309183.1| crossover junction endodeoxyribonuclease RuvC [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
 gi|328489722|dbj|GAA03680.1| crossover junction endodeoxyribonuclease RuvC [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
          Length = 173

 Score =  194 bits (495), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 65/154 (42%), Positives = 100/154 (64%), Gaps = 1/154 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I +     +  RL Q+Y G+++VI  ++P+
Sbjct: 4   ILGIDPGSRITGYGVIRQVGRKLEYLGSGCIRT-SEPDIPGRLKQIYAGVSEVITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+E+VF+ K+A + +KLGQAR  AI++   A +PVSEYA   IK+AV+G G  DK Q+
Sbjct: 63  CFAIEEVFMGKNASSAIKLGQARGSAIVAAVNADLPVSEYAARLIKQAVVGTGGADKAQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
             M+  ++  +     DAADALA+A+CHA+   +
Sbjct: 123 QHMVCSVLKLAGKPQADAADALAVAICHAHTHKT 156


>gi|320539866|ref|ZP_08039525.1| component of RuvABC resolvasome, endonuclease [Serratia symbiotica
           str. Tucson]
 gi|320030052|gb|EFW12072.1| component of RuvABC resolvasome, endonuclease [Serratia symbiotica
           str. Tucson]
          Length = 173

 Score =  194 bits (495), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 49/134 (36%), Positives = 83/134 (61%), Gaps = 1/134 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L +++SG I + V + +  RL  +Y G++++I  ++P+
Sbjct: 4   ILGIDPGSRITGYGLIRQQGRQLTYIASGCIRTVV-EDMPMRLKLIYAGVSEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+  + LKLGQA  +AI++     + V EYA   +K+ V+G G  +K Q+
Sbjct: 63  FFAIEQVFMAKNPDSALKLGQACGVAIVAAVNQNLDVFEYAARQVKQTVVGTGAAEKAQV 122

Query: 127 HMMLKMLMPESFFK 140
             M++ L+  S   
Sbjct: 123 QHMVRSLLKLSANP 136


>gi|88861320|ref|ZP_01135951.1| Holliday junction nuclease [Pseudoalteromonas tunicata D2]
 gi|88816699|gb|EAR26523.1| Holliday junction nuclease [Pseudoalteromonas tunicata D2]
          Length = 173

 Score =  194 bits (495), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 66/162 (40%), Positives = 100/162 (61%), Gaps = 2/162 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++ + G    ++ SG I     + LA RL  ++ G++ +I+ ++P 
Sbjct: 4   ILGIDPGSRLTGYGVISMQGSKYSYLGSGCIRL-GDKPLAERLKMIFLGVSQIIEQYQPT 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+  +  + LKLGQAR  AI++  +A + V EY+   +K+AV+G G  DKKQ+
Sbjct: 63  AFAIEQVFMAHNPDSALKLGQARGAAIVAATMADLLVCEYSARQVKQAVVGNGGADKKQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
             M+K L+        DAADALAIA+CH +   S   K+A Q
Sbjct: 123 QHMVKTLLTLPSMPQADAADALAIAMCHGHSQQS-LIKLAGQ 163


>gi|256160419|ref|ZP_05458108.1| Holliday junction resolvase [Brucella ceti M490/95/1]
 gi|256255625|ref|ZP_05461161.1| Holliday junction resolvase [Brucella ceti B1/94]
 gi|261222828|ref|ZP_05937109.1| crossover junction endodeoxyribonuclease ruvC [Brucella ceti B1/94]
 gi|265998787|ref|ZP_06111344.1| crossover junction endodeoxyribonuclease ruvC [Brucella ceti
           M490/95/1]
 gi|260921412|gb|EEX88065.1| crossover junction endodeoxyribonuclease ruvC [Brucella ceti B1/94]
 gi|262553476|gb|EEZ09245.1| crossover junction endodeoxyribonuclease ruvC [Brucella ceti
           M490/95/1]
          Length = 173

 Score =  194 bits (495), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 105/160 (65%), Positives = 130/160 (81%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M+++IRIIGIDPGLR+TGWGIV+  G++L F+ SGT+ S     LA RLCQL+EGL+ V+
Sbjct: 1   MKETIRIIGIDPGLRQTGWGIVESLGNSLHFIGSGTVTSNAEMDLASRLCQLHEGLSKVL 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             + P EAAVE  FVNKDA ATLKLGQAR IA+L+PA A +PV+EYAPN +KKAVIGVGH
Sbjct: 61  HEFMPHEAAVEHTFVNKDATATLKLGQARGIALLAPAQAGLPVAEYAPNAVKKAVIGVGH 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           G+K+QIHMM+K+LMP + F   DAADALAIA+CHA+H  S
Sbjct: 121 GEKQQIHMMVKVLMPRASFDTSDAADALAIAICHAHHRQS 160


>gi|260753287|ref|YP_003226180.1| Holliday junction resolvase [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
 gi|258552650|gb|ACV75596.1| crossover junction endodeoxyribonuclease RuvC [Zymomonas mobilis
           subsp. mobilis NCIMB 11163]
          Length = 169

 Score =  194 bits (495), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 75/159 (47%), Positives = 102/159 (64%)

Query: 4   SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
            +  +G+DPGL  TGWG + V G+ L  +++G I +    +LA RL  L++ L  VI + 
Sbjct: 2   PMIFLGLDPGLGTTGWGAITVEGNRLSHIANGQIRTDPSMALARRLALLHDALAAVIASH 61

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +PE AAVE+V  N +A +TLKLGQAR IA+ S A A + V EY PN +KKAV+G G  DK
Sbjct: 62  QPEMAAVEEVLGNSNAQSTLKLGQARGIALFSLAEAGLSVGEYHPNVVKKAVVGTGSADK 121

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGY 162
           KQ+  M+  L+P     G DAADALA+A+ HA+H  S  
Sbjct: 122 KQVQAMVSRLLPGVKLAGPDAADALAVAITHAHHHASAR 160


>gi|149277091|ref|ZP_01883233.1| Holliday junction resolvase [Pedobacter sp. BAL39]
 gi|149231968|gb|EDM37345.1| Holliday junction resolvase [Pedobacter sp. BAL39]
          Length = 187

 Score =  194 bits (495), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 50/158 (31%), Positives = 87/158 (55%), Gaps = 1/158 (0%)

Query: 2   RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           +K   I+GIDPG    G+G++   G  +  V+ G +          +L +++E    +I 
Sbjct: 5   KKERVIMGIDPGTSIMGYGVILERGSKIELVTMGIVRMDHMDDHFLKLQRIFEKTVVLID 64

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
            ++P+  A+E  F  K+    LKLG+A+ +A+ +     IP++EYAP  IK+++ G G  
Sbjct: 65  EFKPDTMALEAPFYGKNIQVMLKLGRAQGVAMAAALSRNIPITEYAPRKIKQSITGNGSS 124

Query: 122 DKKQIHMMLKMLMP-ESFFKGKDAADALAIAVCHAYHA 158
            K+Q+  ML+ L+  +   +  DA D LA+AVCH++  
Sbjct: 125 GKEQVAAMLQRLLNFKETPEFLDATDGLAVAVCHSFQR 162


>gi|322832434|ref|YP_004212461.1| crossover junction endodeoxyribonuclease RuvC [Rahnella sp. Y9602]
 gi|321167635|gb|ADW73334.1| crossover junction endodeoxyribonuclease RuvC [Rahnella sp. Y9602]
          Length = 173

 Score =  194 bits (495), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 50/135 (37%), Positives = 81/135 (60%), Gaps = 1/135 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+GI+   G  L ++ SG I + V   +  RL  +Y G++++I  ++P+
Sbjct: 4   ILGIDPGSRITGYGIIRQTGRQLSYLGSGCIRTVVD-DMPGRLKLIYAGVSEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+E VF+ K+A + LKLGQAR  AI++     +PV EYA   +K+ V+G G  +K Q+
Sbjct: 63  FFAIESVFMAKNADSALKLGQARGAAIVAAVNQDLPVFEYAARQVKQTVVGTGAAEKAQV 122

Query: 127 HMMLKMLMPESFFKG 141
             M++ ++       
Sbjct: 123 QHMVRSILKLPANPQ 137


>gi|255530314|ref|YP_003090686.1| crossover junction endodeoxyribonuclease RuvC [Pedobacter heparinus
           DSM 2366]
 gi|255343298|gb|ACU02624.1| crossover junction endodeoxyribonuclease RuvC [Pedobacter heparinus
           DSM 2366]
          Length = 187

 Score =  194 bits (495), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 50/157 (31%), Positives = 87/157 (55%), Gaps = 1/157 (0%)

Query: 2   RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           +K   I+GIDPG    G+G++   G  +  ++ G +          +L +++E    +I 
Sbjct: 5   KKERVIMGIDPGTSIMGYGVILERGSKIELITMGIVRMDHLDDHFLKLQRIFEKTVRLID 64

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
            ++P+  A+E  F  K+    LKLG+A+ IA+ +     IP++EYAP  IK+++ G G  
Sbjct: 65  EYKPDILALEAPFYGKNIQVMLKLGRAQGIAMAAALSKNIPINEYAPRKIKQSITGNGSA 124

Query: 122 DKKQIHMMLKMLMP-ESFFKGKDAADALAIAVCHAYH 157
            K+Q+  ML+ L+  +   +  DA D LA+AVCH++ 
Sbjct: 125 GKEQVAAMLQRLLNFKETPEFLDATDGLAVAVCHSFQ 161


>gi|167035196|ref|YP_001670427.1| Holliday junction resolvase [Pseudomonas putida GB-1]
 gi|189046074|sp|B0KTJ4|RUVC_PSEPG RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|166861684|gb|ABZ00092.1| crossover junction endodeoxyribonuclease RuvC [Pseudomonas putida
           GB-1]
          Length = 174

 Score =  194 bits (495), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 60/154 (38%), Positives = 96/154 (62%), Gaps = 1/154 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G+V        +V+SG I +     L  RL  ++ G++++I    P 
Sbjct: 4   ILGIDPGSRITGYGVVRQTARGCEYVASGCIRTGSG-ELHERLQIVFRGVSEIIAQHGPV 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
              +E+VF+ ++A + LKLGQAR  AI++ A A + ++EY+   +K+AV G G  +K+Q+
Sbjct: 63  TMGIERVFMARNADSALKLGQARGAAIVAAAEAGLEIAEYSATQVKQAVAGTGGANKEQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
            MM+  L+  +     DA+DALAIA+CHA+  +S
Sbjct: 123 MMMVMHLLKLTQKPQIDASDALAIALCHAHTRSS 156


>gi|240137472|ref|YP_002961943.1| RuvC; Holliday junction nuclease [Methylobacterium extorquens AM1]
 gi|240007440|gb|ACS38666.1| RuvC; Holliday junction nuclease [Methylobacterium extorquens AM1]
          Length = 202

 Score =  194 bits (495), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 74/140 (52%), Positives = 100/140 (71%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M   +RI+GIDPGLRRTGWG++   G  L +++ G + S     LA RL +L+EGLT ++
Sbjct: 14  MTTDVRILGIDPGLRRTGWGLITARGSKLSYLACGVVTSDGDLPLALRLRELHEGLTRIV 73

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             + P+E +VE+ FVNKDA ATLKLG ARA+A+L PALA +PV+EYA N +KK V G GH
Sbjct: 74  TTYTPDEVSVEETFVNKDAQATLKLGHARAVALLVPALAGLPVAEYAANLVKKTVAGNGH 133

Query: 121 GDKKQIHMMLKMLMPESFFK 140
            +K QI  M+K L+P++ FK
Sbjct: 134 AEKVQIQAMVKFLLPKAEFK 153


>gi|145220235|ref|YP_001130944.1| crossover junction endodeoxyribonuclease RuvC [Prosthecochloris
           vibrioformis DSM 265]
 gi|189046073|sp|A4SG33|RUVC_PROVI RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|145206399|gb|ABP37442.1| crossover junction endodeoxyribonuclease RuvC [Chlorobium
           phaeovibrioides DSM 265]
          Length = 189

 Score =  194 bits (494), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 54/159 (33%), Positives = 84/159 (52%), Gaps = 2/159 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           + ++GIDPG   TG+G+V   G      +S G I    R+S A R+ ++Y  L+++I   
Sbjct: 1   MVVLGIDPGSLATGYGVVSGDGRESFRALSCGLIRLHPRKSHAVRVGEIYRELSELIGEL 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +P+  A+E  FV K+  + LKLGQ R   +     + +P+ EYAP  +K AV G G   K
Sbjct: 61  KPDRVAIETAFVGKNVQSALKLGQVRGAIMALSFNSGVPIFEYAPREVKSAVTGRGGAAK 120

Query: 124 KQIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHANSG 161
           +Q+  M+  ++   S  K  D  DAL +A+C       G
Sbjct: 121 EQVAFMVASMLSLSSVPKPFDVTDALGVALCDLLRCGGG 159


>gi|313673193|ref|YP_004051304.1| crossover junction endodeoxyribonuclease ruvc [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312939949|gb|ADR19141.1| crossover junction endodeoxyribonuclease RuvC [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 164

 Score =  194 bits (494), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 57/150 (38%), Positives = 90/150 (60%), Gaps = 1/150 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + I+GIDPGL +TG G++ V   NL ++    I +  ++SL  RL ++  GL+D+IK ++
Sbjct: 1   MIILGIDPGLNKTGVGVLKVDNKNLGYLHHFVIKTDPKESLVLRLKEITTGLSDIIKEFQ 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P  AAVE +F + +  + + LGQ R   I +   + + V EY    IKK+V+G G  DK+
Sbjct: 61  PSYAAVEDIFYSVNIKSAILLGQTRGCIISTLVASGVEVMEYTALQIKKSVVGYGKADKE 120

Query: 125 QIHMMLKMLMPESFFKG-KDAADALAIAVC 153
           Q+  M++ML+         DA+DALA A+C
Sbjct: 121 QVKKMVEMLLKIELRNTLNDASDALACAIC 150


>gi|152979458|ref|YP_001345087.1| Holliday junction resolvase [Actinobacillus succinogenes 130Z]
 gi|150841181|gb|ABR75152.1| crossover junction endodeoxyribonuclease RuvC [Actinobacillus
           succinogenes 130Z]
          Length = 205

 Score =  194 bits (494), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 51/135 (37%), Positives = 82/135 (60%), Gaps = 1/135 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I +     L  RL ++Y G+T++I  ++P+
Sbjct: 19  ILGIDPGSRVTGYGVIRQTGRTLEYLGSGVIRTQAD-DLPTRLKRIYAGVTEIITQFQPD 77

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+E+VF+ K+  + LKLGQAR  AI++     +PV EYA   +K+ V+G+G  DK Q+
Sbjct: 78  MFAIEEVFLAKNPNSALKLGQARGTAIVAAVNRDLPVFEYAARLVKQTVVGIGSADKSQV 137

Query: 127 HMMLKMLMPESFFKG 141
             M+  ++  S    
Sbjct: 138 QDMVARILKLSDKPQ 152


>gi|97274471|sp|Q6FAQ2|RUVC_ACIAD RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
          Length = 181

 Score =  194 bits (494), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 65/154 (42%), Positives = 99/154 (64%), Gaps = 1/154 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           IIGIDPG R TG+GI++  G+ L F+ +GTI +   Q +  RL +++ G+  ++K   P 
Sbjct: 4   IIGIDPGSRLTGYGIIEKNGNELRFIDAGTIRTES-QDMPERLKRIFAGVERIVKFHGPT 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           +AAVEQVF+ ++  + LKLGQAR  AI +     + V+EY    IK++V+G G  DK+Q+
Sbjct: 63  QAAVEQVFMAQNPDSALKLGQARGAAIAALVNLDLEVAEYTARQIKQSVVGYGAADKEQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
            MM+  ++  +     DAADALA A+CHA+ + S
Sbjct: 123 QMMVMRILNLTIKPQSDAADALAAAICHAHASGS 156


>gi|315604285|ref|ZP_07879351.1| crossover junction endoribonuclease subunit C [Actinomyces sp. oral
           taxon 180 str. F0310]
 gi|315313991|gb|EFU62042.1| crossover junction endoribonuclease subunit C [Actinomyces sp. oral
           taxon 180 str. F0310]
          Length = 209

 Score =  194 bits (494), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 51/157 (32%), Positives = 81/157 (51%), Gaps = 2/157 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++GIDPGL R G G++DV        V  G   S    +  FRL  + + +  VI+ +
Sbjct: 1   MRVMGIDPGLTRCGLGVIDVDPSRRATLVYVGVARSDKDLATHFRLRTIADAIDGVIERY 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            PE  A+E+VF   +  +     Q    A+     A +P++ + P+ +K AV G G+ DK
Sbjct: 61  APEVVAIERVFAQDNLQSVTTTMQVMGAAMTCVGRAGLPMAVHTPSEVKSAVSGNGNADK 120

Query: 124 KQIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHAN 159
            Q+  M+  ++      K  DAAD+LAIA+ HA+   
Sbjct: 121 AQVQTMVARILGLVKAPKPADAADSLAIAITHAWRGT 157


>gi|23502562|ref|NP_698689.1| Holliday junction resolvase [Brucella suis 1330]
 gi|38258597|sp|Q8FZ01|RUVC_BRUSU RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|23348563|gb|AAN30604.1| crossover junction endodeoxyribonuclease RuvC [Brucella suis 1330]
          Length = 173

 Score =  194 bits (494), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 105/160 (65%), Positives = 129/160 (80%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M+++IRIIGIDPGL RTGWGIV+  G++L F+ SGT+ S     LA RLCQL+EGL+ V+
Sbjct: 1   MKETIRIIGIDPGLLRTGWGIVESLGNSLHFIGSGTVTSNAEMDLASRLCQLHEGLSKVL 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             + P EAAVE  FVNKDA ATLKLGQAR IA+L+PA A +PV+EYAPN +KKAVIGVGH
Sbjct: 61  HEFMPHEAAVEHTFVNKDATATLKLGQARGIALLAPAQAGLPVAEYAPNAVKKAVIGVGH 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           G+K+QIHMM+K+LMP + F   DAADALAIA+CHA+H  S
Sbjct: 121 GEKQQIHMMVKVLMPRASFDTSDAADALAIAICHAHHRQS 160


>gi|254473255|ref|ZP_05086653.1| crossover junction endodeoxyribonuclease RuvC [Pseudovibrio sp.
           JE062]
 gi|211957976|gb|EEA93178.1| crossover junction endodeoxyribonuclease RuvC [Pseudovibrio sp.
           JE062]
          Length = 166

 Score =  194 bits (494), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 94/162 (58%), Positives = 123/162 (75%)

Query: 8   IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEE 67
           +G+DPGLR TGWGI+D  G+ + F++SGTI S  + SLA RL QLY GL +VI+ + P E
Sbjct: 1   MGVDPGLRNTGWGIIDAKGNRVSFIASGTIQSNNKYSLAERLKQLYTGLQEVIERYGPAE 60

Query: 68  AAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIH 127
           AAVE  FVNKDA ATLKLGQAR IA+L P+L  + VSEYAPN +KK V+G GH +K+QI 
Sbjct: 61  AAVENTFVNKDAGATLKLGQARGIALLVPSLHNLVVSEYAPNLVKKTVVGTGHAEKEQIR 120

Query: 128 MMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQD 169
           MM+K+LMP++ F   DAADALAIA+CH++H  S   ++A+ +
Sbjct: 121 MMVKVLMPKATFNSDDAADALAIAICHSHHRGSVTGRLAAAE 162


>gi|126737217|ref|ZP_01752952.1| Holliday junction resolvase [Roseobacter sp. SK209-2-6]
 gi|126721802|gb|EBA18505.1| Holliday junction resolvase [Roseobacter sp. SK209-2-6]
          Length = 165

 Score =  194 bits (494), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 77/161 (47%), Positives = 112/161 (69%), Gaps = 1/161 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGLR  GWG+++  G  L  V++G   S     L  RL  L+  ++++I+ ++
Sbjct: 1   MRILGIDPGLRTLGWGVIESQGSRLSHVANGLCHSD-GDDLGERLLSLHNQVSEIIEAYQ 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P++AA+EQ FVNKD   TLKLGQAR +A+L+ A A +P  EYAPN +KK V+GVGH +K+
Sbjct: 60  PDQAAIEQTFVNKDGAGTLKLGQARGVALLTLAKAGLPTGEYAPNRVKKTVVGVGHAEKE 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
           Q+  M+K+ +P    KG DAADALAIA+CHAY+  +   ++
Sbjct: 120 QVLHMVKLQLPGCDPKGADAADALAIAICHAYYGGTQQRQL 160


>gi|59711557|ref|YP_204333.1| Holliday junction resolvase [Vibrio fischeri ES114]
 gi|197336110|ref|YP_002155713.1| crossover junction endodeoxyribonuclease RuvC [Vibrio fischeri
           MJ11]
 gi|71649500|sp|Q5E6A1|RUVC_VIBF1 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|226698769|sp|B5FCQ0|RUVC_VIBFM RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|59479658|gb|AAW85445.1| component of RuvABC resolvasome, endonuclease [Vibrio fischeri
           ES114]
 gi|197317600|gb|ACH67047.1| crossover junction endodeoxyribonuclease RuvC [Vibrio fischeri
           MJ11]
          Length = 173

 Score =  194 bits (494), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 65/154 (42%), Positives = 96/154 (62%), Gaps = 1/154 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G +L ++ SG I    +  L  RL Q+Y G++++I  ++P+
Sbjct: 4   ILGIDPGSRITGYGVIRQNGRHLQYLGSGCIRMSEK-ELPGRLKQIYAGVSEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF++K+A + LKLGQAR  AI++   A +PV EYA   IK+AV G G  DK Q+
Sbjct: 63  VFAIEQVFMSKNADSALKLGQARGSAIVAAVNADLPVYEYAARLIKQAVTGTGGADKSQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
             M+  ++        DAADAL  A+CHA    +
Sbjct: 123 QHMVMSMLKLPAKPQADAADALGAAICHANTNKT 156


>gi|187611417|sp|A6VQA5|RUVC_ACTSZ RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
          Length = 190

 Score =  194 bits (494), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 51/135 (37%), Positives = 82/135 (60%), Gaps = 1/135 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I +     L  RL ++Y G+T++I  ++P+
Sbjct: 4   ILGIDPGSRVTGYGVIRQTGRTLEYLGSGVIRTQAD-DLPTRLKRIYAGVTEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+E+VF+ K+  + LKLGQAR  AI++     +PV EYA   +K+ V+G+G  DK Q+
Sbjct: 63  MFAIEEVFLAKNPNSALKLGQARGTAIVAAVNRDLPVFEYAARLVKQTVVGIGSADKSQV 122

Query: 127 HMMLKMLMPESFFKG 141
             M+  ++  S    
Sbjct: 123 QDMVARILKLSDKPQ 137


>gi|319899374|ref|YP_004159471.1| Holliday junction nuclease ruvC [Bartonella clarridgeiae 73]
 gi|319403342|emb|CBI76901.1| Holliday junction nuclease ruvC [Bartonella clarridgeiae 73]
          Length = 169

 Score =  194 bits (494), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 103/168 (61%), Positives = 135/168 (80%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M ++IRIIGIDPGLR TGWG++D+ G++L FV++GT+ S  + +LA RLCQLYEGL+ V+
Sbjct: 1   MVETIRIIGIDPGLRHTGWGVIDLCGNHLHFVAAGTLHSKPQNNLASRLCQLYEGLSKVV 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             + P EAAVE VFVNKDA ATLKLGQARAIA+L PA   +P+SEYAPN +KK+VIGVGH
Sbjct: 61  HEFMPHEAAVEHVFVNKDAAATLKLGQARAIALLVPAQKGLPISEYAPNKVKKSVIGVGH 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
           G+K+QIHMM+K+L+P + F   DAADALA+A+CH+ H  S  Y++ + 
Sbjct: 121 GEKEQIHMMVKILLPRAEFDSSDAADALALAICHSTHRTSTSYRLKAS 168


>gi|254476073|ref|ZP_05089459.1| crossover junction endodeoxyribonuclease RuvC [Ruegeria sp. R11]
 gi|214030316|gb|EEB71151.1| crossover junction endodeoxyribonuclease RuvC [Ruegeria sp. R11]
          Length = 165

 Score =  194 bits (494), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 77/161 (47%), Positives = 110/161 (68%), Gaps = 1/161 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGLR  GWG+++  G  L  V++G   +     L  RL  L+  + +VI+ +R
Sbjct: 1   MRILGIDPGLRNLGWGVIESRGTRLSHVANGV-CTSDGDDLGERLLSLHNQVIEVIEAYR 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P++AA+EQ FVNKD   TLKLGQAR +A+++ A A +PV EYAPN +KK V+GVGH  K+
Sbjct: 60  PDQAAIEQTFVNKDGAGTLKLGQARGVALMTLAQAGLPVGEYAPNRVKKTVVGVGHAAKE 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
           QI  M+K+ +P    K  DAADALAIA+CHA++  +   ++
Sbjct: 120 QILHMVKLQLPGCLPKNADAADALAIAICHAFYGGTQARQL 160


>gi|110635508|ref|YP_675716.1| Holliday junction resolvase [Mesorhizobium sp. BNC1]
 gi|123161736|sp|Q11DH4|RUVC_MESSB RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|110286492|gb|ABG64551.1| Holliday junction endonuclease RuvC [Chelativorans sp. BNC1]
          Length = 171

 Score =  194 bits (494), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 100/166 (60%), Positives = 133/166 (80%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M  +IRIIGIDPGLRRTGW +++  G++L F+ +GT+ S  +  LA RLCQL++GL +++
Sbjct: 1   MTGTIRIIGIDPGLRRTGWAVIETVGNSLRFIGAGTVRSNDKADLASRLCQLHDGLAEIL 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
               P+EAAVE  FVNKDAVATLKLGQAR IA+L PA A + V+EYAPN +KKAVIGVGH
Sbjct: 61  HLHMPQEAAVEATFVNKDAVATLKLGQARGIAMLVPARAGLRVAEYAPNAVKKAVIGVGH 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
           G+K+QIHMM+K+LMP++ F G DAADA+A+A+CHA+H  S  +++A
Sbjct: 121 GEKRQIHMMVKVLMPKALFDGDDAADAIAVAICHAHHRQSPAWRLA 166


>gi|262372759|ref|ZP_06066038.1| crossover junction endodeoxyribonuclease RuvC [Acinetobacter junii
           SH205]
 gi|262312784|gb|EEY93869.1| crossover junction endodeoxyribonuclease RuvC [Acinetobacter junii
           SH205]
          Length = 181

 Score =  194 bits (494), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 67/154 (43%), Positives = 99/154 (64%), Gaps = 1/154 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           IIGIDPG R TG+GI++  G+ L FV +GTI +   Q +  RL +++ G+  ++K   P 
Sbjct: 4   IIGIDPGSRLTGYGIIEKDGNKLRFVDAGTIRTET-QEMPERLKRIFAGIERIVKFHGPT 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           EAAVEQVF+ ++  + LKLGQAR  AI +     + V+EY    IK++V+G G  +K+Q+
Sbjct: 63  EAAVEQVFMAQNPDSALKLGQARGAAIAALVNLDLQVAEYTARQIKQSVVGYGAAEKEQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
            MM+  L+  +     DAADALA A+CHA+ + S
Sbjct: 123 QMMVMKLLNLTIQPQADAADALAAAICHAHASGS 156


>gi|307298438|ref|ZP_07578241.1| crossover junction endodeoxyribonuclease RuvC [Thermotogales
           bacterium mesG1.Ag.4.2]
 gi|306915603|gb|EFN45987.1| crossover junction endodeoxyribonuclease RuvC [Thermotogales
           bacterium mesG1.Ag.4.2]
          Length = 168

 Score =  194 bits (494), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 40/142 (28%), Positives = 79/142 (55%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M   +R++GIDPG    G+G+V++    +  VS G I +  ++ +  RL ++++ L +++
Sbjct: 1   MPACVRVLGIDPGFGAVGYGVVEMRSSRIDLVSYGAIRTEPQEPIPDRLLKIHDRLEELL 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             +RP+E+AVE++F  ++    +++ +AR + +L+     +P+ EY P+ +K AV G G 
Sbjct: 61  LEFRPDESAVEELFFFRNVTTAIQVSEARGVILLAMRRHEVPIFEYTPHQVKLAVTGYGR 120

Query: 121 GDKKQIHMMLKMLMPESFFKGK 142
            +K Q+   LK           
Sbjct: 121 AEKGQVQRTLKTFFRMEVNPRP 142


>gi|303325470|ref|ZP_07355913.1| crossover junction endodeoxyribonuclease RuvC [Desulfovibrio sp.
           3_1_syn3]
 gi|302863386|gb|EFL86317.1| crossover junction endodeoxyribonuclease RuvC [Desulfovibrio sp.
           3_1_syn3]
          Length = 167

 Score =  194 bits (493), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 59/155 (38%), Positives = 93/155 (60%), Gaps = 2/155 (1%)

Query: 3   KSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVS-CVRQSLAFRLCQLYEGLTDVIK 61
           + + +IGIDPG +RTGWG+V      L  V  G + +    +  + RL ++Y  L  V+ 
Sbjct: 2   QPVTVIGIDPGSQRTGWGVVREVSGVLRLVDCGVVRTASAGKEFSARLARIYHELAKVLG 61

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
             +P+EAA+EQVF  K+A + LKLGQAR +A+ + A   + +S+Y P  +KK+++G G  
Sbjct: 62  RCKPDEAAIEQVFTAKNAASALKLGQARGVAVAACAAYGLGISDYEPTLVKKSLVGTGRA 121

Query: 122 DKKQIHMMLKMLMP-ESFFKGKDAADALAIAVCHA 155
           +K+Q+  M+K L+         D +DAL +AVCH 
Sbjct: 122 EKEQVAFMVKRLLNVREADWALDTSDALGVAVCHL 156


>gi|157738529|ref|YP_001491213.1| Holliday junction resolvase [Arcobacter butzleri RM4018]
 gi|315635400|ref|ZP_07890666.1| crossover junction endoribonuclease subunit C [Arcobacter butzleri
           JV22]
 gi|167012676|sp|A8EX70|RUVC_ARCB4 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|157700383|gb|ABV68543.1| crossover junction endodeoxyribonuclease RuvC [Arcobacter butzleri
           RM4018]
 gi|315480158|gb|EFU70825.1| crossover junction endoribonuclease subunit C [Arcobacter butzleri
           JV22]
          Length = 154

 Score =  194 bits (493), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 50/154 (32%), Positives = 81/154 (52%), Gaps = 2/154 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++I+GIDPG R  G+ IV+  G +L  + +G I     + L  ++ ++ EGL  + KN +
Sbjct: 1   MKILGIDPGTRNCGYAIVEKNGRDLKLIEAGLIK-IKTKILQEQIVEMTEGLDLLFKNHK 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
            ++ ++E +F   +    +KL Q R    L         SEY P  +K+AV G G   K+
Sbjct: 60  IDQVSIEDMFYAFNPKTVIKLAQFRGAISLKILQEFGNFSEYTPLQVKQAVTGNGKATKE 119

Query: 125 QIHMMLKMLMP-ESFFKGKDAADALAIAVCHAYH 157
           Q+  M+K L+  +   K  D  DA+AIA+ HA  
Sbjct: 120 QVAFMVKRLLNVKKEIKPLDITDAIAIALTHAQR 153


>gi|123966378|ref|YP_001011459.1| Holliday junction resolvase [Prochlorococcus marinus str. MIT 9515]
 gi|166233283|sp|A2BX41|RUVC_PROM5 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|123200744|gb|ABM72352.1| Crossover junction endodeoxyribonuclease RuvC [Prochlorococcus
           marinus str. MIT 9515]
          Length = 157

 Score =  194 bits (493), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 56/156 (35%), Positives = 85/156 (54%), Gaps = 2/156 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RIIGIDPGL R G+GI+++  +   F+  G I +   +    RL +++  L  +I  W+
Sbjct: 1   MRIIGIDPGLGRVGYGIIEIQNEKKKFLDCGVIETDKNKKEEDRLYEIFNDLNTLINQWK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ AAVE+ F  K    T+ + QAR + ++  A   I VSEYAP+ +K  + G G   KK
Sbjct: 61  PDIAAVEKFFFYKS-STTISVVQARGVIMMVLASKNIQVSEYAPSQVKLTIAGSGKASKK 119

Query: 125 QIHMMLK-MLMPESFFKGKDAADALAIAVCHAYHAN 159
           ++   +   L      K  D+ADALAIA+     A 
Sbjct: 120 EVIEAVMFNLNLNYAPKPDDSADALAIALTKLNEAG 155


>gi|228471068|ref|ZP_04055903.1| crossover junction endodeoxyribonuclease RuvC [Porphyromonas
           uenonis 60-3]
 gi|313886912|ref|ZP_07820615.1| crossover junction endodeoxyribonuclease RuvC [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|332300798|ref|YP_004442719.1| crossover junction endodeoxyribonuclease RuvC [Porphyromonas
           asaccharolytica DSM 20707]
 gi|228307190|gb|EEK16227.1| crossover junction endodeoxyribonuclease RuvC [Porphyromonas
           uenonis 60-3]
 gi|312923609|gb|EFR34415.1| crossover junction endodeoxyribonuclease RuvC [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|332177861|gb|AEE13551.1| crossover junction endodeoxyribonuclease RuvC [Porphyromonas
           asaccharolytica DSM 20707]
          Length = 192

 Score =  194 bits (493), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 53/167 (31%), Positives = 90/167 (53%), Gaps = 6/167 (3%)

Query: 1   MRKSI--RII-GIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLT 57
           M KS   RI+ GIDPG    G+G++ V G +   ++ G I     +    RL ++Y+ + 
Sbjct: 1   MSKSRGERILIGIDPGTIVMGYGLLSVRGQHAEMLTMGVIELSRYEDHYTRLGRIYKRVA 60

Query: 58  DVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIG 117
            +I  + P+E A+E  F  K+  + LKLG+A+ +A+ +     IP++EY P  +K+A+ G
Sbjct: 61  GLIDEFLPDEMALEAPFYGKNVQSMLKLGRAQGVAMAAALSRDIPIAEYVPMRVKQAITG 120

Query: 118 VGHGDKKQIHMMLKMLMPES---FFKGKDAADALAIAVCHAYHANSG 161
            G   K+Q+  ML+ ++        +  DA D LA+A CH    ++ 
Sbjct: 121 TGQASKEQVATMLQRVLRIPAELMPEKLDATDGLAVAYCHFLQTSNA 167


>gi|78188147|ref|YP_378485.1| crossover junction endodeoxyribonuclease RuvC [Chlorobium
           chlorochromatii CaD3]
 gi|90146448|sp|Q3AU83|RUVC_CHLCH RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|78170346|gb|ABB27442.1| Crossover junction endodeoxyribonuclease RuvC [Chlorobium
           chlorochromatii CaD3]
          Length = 192

 Score =  194 bits (493), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 49/157 (31%), Positives = 79/157 (50%), Gaps = 1/157 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + ++G+DPG  +TG+G+V     +   +++G I      S   R+  +   L  VI  ++
Sbjct: 1   MIVLGVDPGSLKTGYGVVQHHNGSFSVLAAGVIRLQAAWSHPERIGIICRELEQVIAEFQ 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           PE  A+E  F++ +  A LKLGQ R   I       +P+ EYAP  +K A+ G G   K+
Sbjct: 61  PERVALETAFLSHNVQAALKLGQVRGAVIGLVVRYALPIYEYAPREVKSAITGKGAATKE 120

Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHANS 160
           Q+  M+  ++   +  K  D  DAL IA+C      S
Sbjct: 121 QVAFMVSRMLSLHTVPKPHDVTDALGIALCDILRGES 157


>gi|56551050|ref|YP_161889.1| Holliday junction resolvase [Zymomonas mobilis subsp. mobilis ZM4]
 gi|81598352|sp|Q5NR76|RUVC_ZYMMO RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|56542624|gb|AAV88778.1| crossover junction endodeoxyribonuclease RuvC [Zymomonas mobilis
           subsp. mobilis ZM4]
          Length = 167

 Score =  194 bits (493), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 75/158 (47%), Positives = 102/158 (64%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +  +G+DPGL  TGWG + V G+ L  +++G I +    +LA RL  L++ L  VI + +
Sbjct: 1   MIFLGLDPGLGTTGWGAITVEGNRLSHIANGQIRTDPSMALARRLALLHDALAAVIASHQ 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           PE AAVE+V  N +A +TLKLGQAR IA+ S A A + V EY PN +KKAV+G G  DKK
Sbjct: 61  PEMAAVEEVLGNSNAQSTLKLGQARGIALFSLAEAGLSVGEYHPNVVKKAVVGTGSADKK 120

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGY 162
           Q+  M+  L+P     G DAADALA+A+ HA+H  S  
Sbjct: 121 QVQAMVSRLLPGVKLAGPDAADALAVAITHAHHHASAR 158


>gi|332288347|ref|YP_004419199.1| Holliday junction resolvase [Gallibacterium anatis UMN179]
 gi|330431243|gb|AEC16302.1| Holliday junction resolvase [Gallibacterium anatis UMN179]
          Length = 187

 Score =  194 bits (493), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 54/135 (40%), Positives = 86/135 (63%), Gaps = 1/135 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I + V   L  RL ++Y G+T++I  ++P+
Sbjct: 4   ILGIDPGSRLTGYGVIKQQGKQLTYLGSGVIRTAVD-DLPSRLQRIYSGVTEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             ++EQVF+ K+A + LKLGQAR +AI++     +PV EYA   +K+ V+G+G  DKKQ+
Sbjct: 63  MLSIEQVFMAKNADSALKLGQARGVAIVAATNQNLPVFEYAARLVKQTVVGIGSADKKQV 122

Query: 127 HMMLKMLMPESFFKG 141
             M+  ++  S    
Sbjct: 123 QHMVTRILHLSSSPQ 137


>gi|325274573|ref|ZP_08140631.1| Holliday junction resolvase [Pseudomonas sp. TJI-51]
 gi|324100300|gb|EGB98088.1| Holliday junction resolvase [Pseudomonas sp. TJI-51]
          Length = 174

 Score =  194 bits (493), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 60/154 (38%), Positives = 96/154 (62%), Gaps = 1/154 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G+V        +V+SG I +     L  RL  ++ G++++I    P 
Sbjct: 4   ILGIDPGSRITGYGVVRQTARGCDYVASGCIRTGSG-ELHERLQIVFRGVSEIITQHGPV 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
              +E+VF+ ++A + LKLGQAR  AI++ A A + ++EY+   +K+AV G G  +K+Q+
Sbjct: 63  TMGIERVFMARNADSALKLGQARGAAIVAAAEAGLEIAEYSATQVKQAVAGTGGANKEQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
            MM+  L+  +     DA+DALAIA+CHA+  +S
Sbjct: 123 MMMVMHLLKLTQKPQIDASDALAIALCHAHTRSS 156


>gi|75676910|ref|YP_319331.1| Holliday junction resolvase [Nitrobacter winogradskyi Nb-255]
 gi|90146468|sp|Q3SP12|RUVC_NITWN RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|74421780|gb|ABA05979.1| Holliday junction endonuclease RuvC [Nitrobacter winogradskyi
           Nb-255]
          Length = 172

 Score =  194 bits (493), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 90/161 (55%), Positives = 118/161 (73%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           +   IRI+GIDPGLRRTGWG++++ G+ L FV  G++ +    +LA RL  ++ GL  V+
Sbjct: 2   ISSPIRILGIDPGLRRTGWGVLEIDGNRLMFVGCGSVETREHMALASRLLAIHAGLGAVL 61

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             +RP EAA+EQ FVNKD VATLKLGQAR +A+L+PAL  I V+EYAPN +KK V+G GH
Sbjct: 62  DQFRPSEAAIEQTFVNKDGVATLKLGQARGVAMLAPALFGIAVAEYAPNQVKKTVVGAGH 121

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSG 161
            DK QI  MLK+L+P++  K  DAADALAIA+ HA+H  S 
Sbjct: 122 ADKAQIQAMLKILLPKADPKSADAADALAIAITHAHHRKSA 162


>gi|254559649|ref|YP_003066744.1| RuvC; Holliday junction nuclease [Methylobacterium extorquens DM4]
 gi|254266927|emb|CAX22726.1| RuvC; Holliday junction nuclease [Methylobacterium extorquens DM4]
          Length = 202

 Score =  194 bits (493), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 74/140 (52%), Positives = 100/140 (71%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M   +RI+GIDPGLRRTGWG++   G  L +++ G + S     LA RL +L+EGLT ++
Sbjct: 14  MTTDVRILGIDPGLRRTGWGLITARGSKLSYLACGVVTSDGDLPLALRLRELHEGLTRIV 73

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             + P+E +VE+ FVNKDA ATLKLG ARA+A+L PALA +PV+EYA N +KK V G GH
Sbjct: 74  TTYTPDEVSVEETFVNKDAQATLKLGHARAVALLVPALAGLPVAEYAANLVKKTVAGNGH 133

Query: 121 GDKKQIHMMLKMLMPESFFK 140
            +K QI  M+K L+P++ FK
Sbjct: 134 AEKVQIQAMVKFLLPKAEFK 153


>gi|190571527|ref|YP_001975885.1| crossover junction endodeoxyribonuclease RuvC [Wolbachia
           endosymbiont of Culex quinquefasciatus Pel]
 gi|238058360|sp|B3CN07|RUVC_WOLPP RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|190357799|emb|CAQ55254.1| crossover junction endodeoxyribonuclease RuvC [Wolbachia
           endosymbiont of Culex quinquefasciatus Pel]
          Length = 165

 Score =  194 bits (493), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 72/164 (43%), Positives = 103/164 (62%), Gaps = 1/164 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVD-VAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           I+IIG+DPG+ +TGW I+     +N+ F+  GTI +  +  +  RL  ++E L  VI  +
Sbjct: 2   IKIIGLDPGMSKTGWAIIRLEEKNNIKFLGGGTISTDGKLGVGERLHIIFEQLKKVIFLY 61

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P EAAVE++F+NK+  ++L LG ARAIAIL   +  +P++EY  N IKK++ G GH DK
Sbjct: 62  SPNEAAVEKIFINKNPKSSLTLGYARAIAILILRMTDLPMNEYDANYIKKSITGNGHADK 121

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
            QI  M+K ++  S  K    ADALA A+CHAY  N  +  I S
Sbjct: 122 GQIIFMVKQIVKSSNIKCHHTADALATAICHAYTKNFCFMGIGS 165


>gi|325922869|ref|ZP_08184592.1| Holliday junction endonuclease RuvC [Xanthomonas gardneri ATCC
           19865]
 gi|325546646|gb|EGD17777.1| Holliday junction endonuclease RuvC [Xanthomonas gardneri ATCC
           19865]
          Length = 174

 Score =  194 bits (493), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 64/157 (40%), Positives = 92/157 (58%), Gaps = 1/157 (0%)

Query: 6   RIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           RI+GIDPG +RTG G++D+        V    +V       A RL +L  GL +VI+ +R
Sbjct: 3   RILGIDPGSQRTGVGVIDIDESGRSRHVYHAPLVLLGEGDFAQRLKRLLHGLGEVIETYR 62

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+E A+E+VF+ K A + LKLG AR  AI +  L  +PV EYA   IK A++G G  DK 
Sbjct: 63  PQEVAIEKVFMGKSADSALKLGHARGAAICAVVLRDLPVHEYAATEIKLALVGKGGADKV 122

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSG 161
           Q+  M+ +++        DAADALA+A+ HA+   + 
Sbjct: 123 QVQHMVGIMLNLKGKLQPDAADALAVAITHAHVRATA 159


>gi|163738341|ref|ZP_02145756.1| Holliday junction resolvase [Phaeobacter gallaeciensis BS107]
 gi|161388262|gb|EDQ12616.1| Holliday junction resolvase [Phaeobacter gallaeciensis BS107]
          Length = 165

 Score =  193 bits (492), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 77/161 (47%), Positives = 109/161 (67%), Gaps = 1/161 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGLR  GWG+++  G  L  V++G   +     L  RL  L+  + +VI  +R
Sbjct: 1   MRILGIDPGLRNLGWGVIESRGTRLSHVANGV-CTSDGDDLGERLLSLHNQVVEVIAAYR 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P++AA+EQ FVNKD   TLKLGQAR +A+++ A A +PV EYAPN +KK V+GVGH  K+
Sbjct: 60  PDQAAIEQTFVNKDGAGTLKLGQARGVALMTLAQAGLPVGEYAPNRVKKTVVGVGHAAKE 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
           QI  M+K+ +P    K  DAADALAIA+CHA++  +   ++
Sbjct: 120 QILHMVKLQLPGCLPKNADAADALAIAICHAFYGGTQQRQL 160


>gi|304440230|ref|ZP_07400120.1| crossover junction endoribonuclease subunit C [Peptoniphilus
           duerdenii ATCC BAA-1640]
 gi|304371279|gb|EFM24895.1| crossover junction endoribonuclease subunit C [Peptoniphilus
           duerdenii ATCC BAA-1640]
          Length = 164

 Score =  193 bits (492), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 42/136 (30%), Positives = 79/136 (58%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + I+GIDPGL   G+G+++V G+   +++ G I +        RL ++Y+ +TD++  ++
Sbjct: 1   MIILGIDPGLALVGYGVIEVIGNKYKYLTHGVIKTEAGVPFQNRLKKIYKEMTDIVIKYK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           PE+ A E++F NK+    + + QAR + +L  +     V EY P  +K+A++G G  +K+
Sbjct: 61  PEDIAFEELFFNKNIKTAISVAQARGVEVLVASTFTDNVYEYTPLQVKQAIVGYGRAEKR 120

Query: 125 QIHMMLKMLMPESFFK 140
           Q+  M KM++      
Sbjct: 121 QVQEMTKMILNLKEIP 136


>gi|114327762|ref|YP_744919.1| Holliday junction resolvase [Granulibacter bethesdensis CGDNIH1]
 gi|122327272|sp|Q0BT56|RUVC_GRABC RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|114315936|gb|ABI61996.1| crossover junction endodeoxyribonuclease ruvC [Granulibacter
           bethesdensis CGDNIH1]
          Length = 178

 Score =  193 bits (492), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 72/159 (45%), Positives = 111/159 (69%)

Query: 2   RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           + ++R++GIDPGLR TGWG+++  G+ L  ++ G I +   +S+  RL  L++ LT ++ 
Sbjct: 9   QATVRMLGIDPGLRFTGWGVIEATGNRLRHIADGVIATDSTESVPARLRVLHDTLTSLLV 68

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
            + P+EAAVE+ +VN++  ATLKLG AR +A+L+PAL  +PV+EY    +K AV+G G  
Sbjct: 69  TYHPDEAAVEETYVNRNGTATLKLGYARGVALLAPALRNVPVAEYGAKAVKLAVVGTGGA 128

Query: 122 DKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
            K Q+ MM++ L+P +  K  DAADALA+A+CHA+H  S
Sbjct: 129 TKDQVQMMVQRLLPGATLKRADAADALAVAICHAHHRAS 167


>gi|104783074|ref|YP_609572.1| Holliday junction resolvase [Pseudomonas entomophila L48]
 gi|123255378|sp|Q1I6E7|RUVC_PSEE4 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|95112061|emb|CAK16788.1| holliday junction nuclease [Pseudomonas entomophila L48]
          Length = 174

 Score =  193 bits (492), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 60/154 (38%), Positives = 98/154 (63%), Gaps = 1/154 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G+V        +V+SG I +     L  RL  ++ G++++I+   P 
Sbjct: 4   ILGIDPGSRITGFGVVRQTARGCEYVASGCIRT-GGGELHERLQIVFRGVSEIIRQHGPV 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
              +E+VF+ ++A + LKLGQAR  AI++ A A + ++EY+ + +K+AV G G  +K+Q+
Sbjct: 63  TMGIERVFMARNADSALKLGQARGAAIVAAAEAGLEIAEYSASQVKQAVAGTGGANKEQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
            MM+  L+  +     DA+DALAIA+CHA+  +S
Sbjct: 123 MMMVMHLLKLTQKPQIDASDALAIALCHAHTRSS 156


>gi|301631770|ref|XP_002944968.1| PREDICTED: uncharacterized protein aq_1259-like [Xenopus (Silurana)
           tropicalis]
          Length = 587

 Score =  193 bits (492), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 60/137 (43%), Positives = 88/137 (64%), Gaps = 7/137 (5%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVS------CVRQSLAFRLCQLYEGLTD 58
           +RI+GIDPGL+ TG+G++DV G +L +V+SGTI +           L  RL  L++G+T+
Sbjct: 1   MRILGIDPGLQTTGFGVLDVQGQHLRYVASGTIRTTGAGAAPALGDLPGRLKLLFDGITE 60

Query: 59  VIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGV 118
           V   ++P+ AAVE VFVN +  +TL LGQAR  A+ +   AR+PV+EY    +KKAV+G 
Sbjct: 61  VAARYQPDTAAVEIVFVNVNPQSTLLLGQARGAALTALVNARLPVAEYTALQMKKAVVGH 120

Query: 119 GHGDKKQIHMMLKMLMP 135
           G   K Q+  M + L+ 
Sbjct: 121 GRAAKAQVQEM-RALLN 136


>gi|262375407|ref|ZP_06068640.1| crossover junction endodeoxyribonuclease RuvC [Acinetobacter
           lwoffii SH145]
 gi|262309661|gb|EEY90791.1| crossover junction endodeoxyribonuclease RuvC [Acinetobacter
           lwoffii SH145]
          Length = 181

 Score =  193 bits (492), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 68/160 (42%), Positives = 102/160 (63%), Gaps = 2/160 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           IIGIDPG R TG+GI++  G  L FV +GTI +     +  RL +++ G+  ++K + P 
Sbjct: 4   IIGIDPGSRLTGYGIIEKDGSKLTFVDAGTIRTET-TEMPERLKRIFAGVERIVKFYGPT 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           EAAVEQVF+ ++  + LKLGQAR  A+ +     + V+EY    IK++V+G G  DK+Q+
Sbjct: 63  EAAVEQVFMAQNPDSALKLGQARGAAVAALVNLDLKVAEYTARQIKQSVVGYGAADKEQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
            MM+  ++  S    +DAADALA A+CHA+ + S   K+A
Sbjct: 123 QMMVMNILKLSIKPQQDAADALAAAICHAHASGS-MSKMA 161


>gi|154250387|ref|YP_001411212.1| crossover junction endodeoxyribonuclease RuvC [Fervidobacterium
           nodosum Rt17-B1]
 gi|171769405|sp|A7HNS2|RUVC_FERNB RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|154154323|gb|ABS61555.1| crossover junction endodeoxyribonuclease RuvC [Fervidobacterium
           nodosum Rt17-B1]
          Length = 166

 Score =  193 bits (492), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 41/136 (30%), Positives = 77/136 (56%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPG    G+G+V+  G+ + +VS G I +   +    RL  +Y  + ++I+ + 
Sbjct: 1   MRILGIDPGYGIVGYGVVEKLGNKIAYVSHGAIKTEKGEHFEDRLDYIYNQVNEIIEKYN 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           PE  A+E ++  K+    + +G+AR + +L+   + IP  E+ P+ +K  V G G  +K 
Sbjct: 61  PELVAIESLYFYKNVKTAIYVGEARGVILLAIKHSNIPFVEFTPHQVKLTVTGYGRAEKT 120

Query: 125 QIHMMLKMLMPESFFK 140
           QI  ++K+L+  +   
Sbjct: 121 QIQKVMKILLKLNEIP 136


>gi|52424766|ref|YP_087903.1| Holliday junction resolvase [Mannheimia succiniciproducens MBEL55E]
 gi|81609597|sp|Q65UP2|RUVC_MANSM RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|52306818|gb|AAU37318.1| RuvC protein [Mannheimia succiniciproducens MBEL55E]
          Length = 199

 Score =  193 bits (492), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 54/135 (40%), Positives = 82/135 (60%), Gaps = 1/135 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+GI+   G  L ++ SG I + V + L  RL ++Y G+T++I  +RP+
Sbjct: 13  ILGIDPGSRVTGYGIIRQTGRTLEYLGSGAIRTQV-EDLPTRLKRIYAGVTEIITQFRPD 71

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+E+VF+ K+  + LKLGQAR  AI++     +PV EYA   +K+ V G G  DK Q+
Sbjct: 72  MFAIEEVFLAKNPNSALKLGQARGTAIVAAVNQNLPVFEYAARLVKQTVTGSGSADKVQV 131

Query: 127 HMMLKMLMPESFFKG 141
             M+  ++  S    
Sbjct: 132 QDMVTRILRLSDKPQ 146


>gi|261880788|ref|ZP_06007215.1| crossover junction endoribonuclease subunit C [Prevotella bergensis
           DSM 17361]
 gi|270332566|gb|EFA43352.1| crossover junction endoribonuclease subunit C [Prevotella bergensis
           DSM 17361]
          Length = 198

 Score =  193 bits (492), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 50/167 (29%), Positives = 86/167 (51%), Gaps = 9/167 (5%)

Query: 1   MRKSIR------IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYE 54
           M ++ R      I+GIDPG    G+G++ V  +    ++ G +          +L +++E
Sbjct: 1   MAETRRQPAERIILGIDPGTNIMGYGVLRVLDNKPEMMALGVVDMRKMDDTYLKLGKIFE 60

Query: 55  GLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKA 114
            +  +I  + P+E A+E  F +K+  + +KLG+A+ +AI +     I + EYAP  IK A
Sbjct: 61  RVIGIIDEYHPDEMAIEAPFYSKNVQSLIKLGRAQGVAISAAIHRDIFIHEYAPLKIKMA 120

Query: 115 VIGVGHGDKKQIHMMLKMLM---PESFFKGKDAADALAIAVCHAYHA 158
           + G G   K+Q+  ML+ L+    +   +  DA DAL  A CH   +
Sbjct: 121 ITGQGQASKEQVASMLQKLLHISKDEMPRFMDATDALGAAYCHFLQS 167


>gi|319902833|ref|YP_004162561.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides
           helcogenes P 36-108]
 gi|319417864|gb|ADV44975.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides
           helcogenes P 36-108]
          Length = 189

 Score =  193 bits (492), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 51/163 (31%), Positives = 83/163 (50%), Gaps = 3/163 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG    G+GI+ + G     ++ G I      +   +L  ++E +  +I+++ P+
Sbjct: 10  ILGIDPGTTIMGYGILRIVGTKPEMIAMGIIDLRKFGNHYLKLRHIHERVLSIIESYLPD 69

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E  F  K+  + LKLG+A+ +A+       IP++EYAP  IK A+ G G   K+Q+
Sbjct: 70  ELAIEAPFFGKNVQSMLKLGRAQGVAMAVALSRDIPITEYAPLKIKMAITGNGQASKEQV 129

Query: 127 HMMLKMLM---PESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
             ML+ ++    E      DA D LA A CH         +  
Sbjct: 130 ADMLQRMLRFPKEDMPTFMDATDGLAAAYCHYLQMGRPAVEKG 172


>gi|254362419|ref|ZP_04978528.1| crossover junction endodeoxyribonuclease [Mannheimia haemolytica
           PHL213]
 gi|261494088|ref|ZP_05990591.1| crossover junction endodeoxyribonuclease [Mannheimia haemolytica
           serotype A2 str. BOVINE]
 gi|261496071|ref|ZP_05992481.1| crossover junction endodeoxyribonuclease [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|153094008|gb|EDN74924.1| crossover junction endodeoxyribonuclease [Mannheimia haemolytica
           PHL213]
 gi|261308321|gb|EEY09614.1| crossover junction endodeoxyribonuclease [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261310254|gb|EEY11454.1| crossover junction endodeoxyribonuclease [Mannheimia haemolytica
           serotype A2 str. BOVINE]
          Length = 192

 Score =  193 bits (492), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 51/135 (37%), Positives = 81/135 (60%), Gaps = 1/135 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I +   + L  RL ++Y G++++I  ++P 
Sbjct: 4   ILGIDPGSRVTGYGVIRQNGRQLEYLGSGAIRTTA-EDLPTRLKRIYAGVSEIITQFQPN 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+  + LKLGQAR  AI++     +PV EYA   +K+ V G+G  DK Q+
Sbjct: 63  MFAIEQVFMAKNPDSALKLGQARGTAIVAAVNHDLPVFEYAARLVKQTVTGIGSADKVQV 122

Query: 127 HMMLKMLMPESFFKG 141
             M+  ++  S    
Sbjct: 123 QDMVTRMLKLSAKPQ 137


>gi|51892297|ref|YP_074988.1| Holliday junction endodeoxyribonuclease RuvC [Symbiobacterium
           thermophilum IAM 14863]
 gi|81610584|sp|Q67Q99|RUVC_SYMTH RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|51855986|dbj|BAD40144.1| Holliday junction endodeoxyribonuclease RuvC [Symbiobacterium
           thermophilum IAM 14863]
          Length = 166

 Score =  193 bits (492), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 48/137 (35%), Positives = 75/137 (54%), Gaps = 1/137 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAG-DNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +RI+GIDPG  R G+GIV+ AG      V  G + +        RL  LY GL D++   
Sbjct: 1   MRILGIDPGTARMGYGIVEDAGAGRERAVEYGCLETPPDMRPELRLQALYRGLADLMARH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RP+  AVE++F  ++    + +GQAR + +L+ A + +PV E+ P  +K AV G G  +K
Sbjct: 61  RPDALAVEELFFGRNVTTAIHVGQARGVVLLAAADSGVPVREFTPMQVKMAVTGYGRANK 120

Query: 124 KQIHMMLKMLMPESFFK 140
            Q+  M++ L+      
Sbjct: 121 AQVQRMVQALLGLPEIP 137


>gi|310778263|ref|YP_003966596.1| crossover junction endodeoxyribonuclease RuvC [Ilyobacter
           polytropus DSM 2926]
 gi|309747586|gb|ADO82248.1| crossover junction endodeoxyribonuclease RuvC [Ilyobacter
           polytropus DSM 2926]
          Length = 190

 Score =  193 bits (492), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 41/136 (30%), Positives = 75/136 (55%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPG    G+GIVD   +N   V+ G I +     ++ RL ++Y+ L  +I+ ++
Sbjct: 1   MRVLGIDPGTATVGYGIVDFKNNNYDTVTYGCIYTDKDLPMSKRLEKIYDELYALIEEYK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P   AVE++F  K+    + +GQAR + IL      + +  Y P  +K  + G G  +KK
Sbjct: 61  PAHMAVEELFYFKNNKTVISVGQARGVIILCGEKQGLCLDSYTPLQVKMGITGYGKSEKK 120

Query: 125 QIHMMLKMLMPESFFK 140
           Q+ +M++ ++  +   
Sbjct: 121 QVQIMVQKILKLNELP 136


>gi|298372975|ref|ZP_06982965.1| crossover junction endodeoxyribonuclease RuvC [Bacteroidetes oral
           taxon 274 str. F0058]
 gi|298275879|gb|EFI17430.1| crossover junction endodeoxyribonuclease RuvC [Bacteroidetes oral
           taxon 274 str. F0058]
          Length = 190

 Score =  193 bits (491), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 58/162 (35%), Positives = 87/162 (53%), Gaps = 3/162 (1%)

Query: 3   KSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
           K   I+GIDPG    G+GI+ V G  + FV+ G I     +     L ++ E +T +++ 
Sbjct: 4   KERIILGIDPGTTVMGYGILRVVGKKVEFVTLGIINLRAIKDHYLTLRKISEEVTKLVET 63

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
           + P+E A+E  F  K+  + LKLG+A+ +AI       IP++EYAP  IK A+ G G   
Sbjct: 64  YLPDELAIEAPFFEKNVQSMLKLGRAQGVAITVAITHDIPIAEYAPLKIKMAITGQGRAS 123

Query: 123 KKQIHMMLKMLM---PESFFKGKDAADALAIAVCHAYHANSG 161
           K+Q+  ML  ++   P S  K  DA D LA A CH    ++ 
Sbjct: 124 KEQVAAMLCKILKISPSSLPKELDATDGLAAAYCHYLQTSTA 165


>gi|326795233|ref|YP_004313053.1| Crossover junction endodeoxyribonuclease ruvC [Marinomonas
           mediterranea MMB-1]
 gi|326545997|gb|ADZ91217.1| Crossover junction endodeoxyribonuclease ruvC [Marinomonas
           mediterranea MMB-1]
          Length = 185

 Score =  193 bits (491), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 68/156 (43%), Positives = 100/156 (64%), Gaps = 1/156 (0%)

Query: 6   RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           RI+ IDPG R TG+G++D       +VSSG +      +LA RL  ++E ++++I  + P
Sbjct: 3   RILAIDPGSRITGYGVIDSKNGKTTYVSSGCVRLP-DANLAVRLRVIFESVSELISQFSP 61

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
            E A+E+VF+ K+A + LKLGQAR  AI+S  +A +PV EYA   +K+++ G G+ DK Q
Sbjct: 62  SEFAIEEVFMAKNASSALKLGQARGAAIVSAGVADLPVYEYAARRVKQSIAGNGNADKAQ 121

Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSG 161
           I  M+++L+        DAADALAIA+CHA    SG
Sbjct: 122 IQAMVQLLLKLPSPPQADAADALAIAMCHANTRTSG 157


>gi|226942103|ref|YP_002797177.1| Holliday junction resolvase [Laribacter hongkongensis HLHK9]
 gi|226717030|gb|ACO76168.1| RuvC [Laribacter hongkongensis HLHK9]
          Length = 179

 Score =  193 bits (491), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 70/163 (42%), Positives = 104/163 (63%)

Query: 4   SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
             R++GIDPG R TG+G++D+ G    +V+SG I +     L  R+  L EGL++V+  +
Sbjct: 5   PRRLLGIDPGSRITGFGVIDLVGSQRVYVASGCIRTRAGAPLTERIKTLLEGLSEVVAAY 64

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +P EAAVEQVFVN +  ATL LGQAR   + +  LA +P+SEY    +K++V+G G  DK
Sbjct: 65  QPGEAAVEQVFVNVNPSATLMLGQARGAVLSALVLAGLPISEYTALQVKQSVVGHGKADK 124

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
           +Q+  M+  L+  +     DAADALA+A+CHA H+++     A
Sbjct: 125 EQVQHMVVRLLGLTGTPQADAADALAVALCHANHSHAAIAGFA 167


>gi|293390519|ref|ZP_06634853.1| Holliday junction resolvase [Aggregatibacter actinomycetemcomitans
           D7S-1]
 gi|290951053|gb|EFE01172.1| Holliday junction resolvase [Aggregatibacter actinomycetemcomitans
           D7S-1]
          Length = 190

 Score =  193 bits (491), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 54/135 (40%), Positives = 85/135 (62%), Gaps = 1/135 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G +L ++ SG I + V + L  RL ++Y  +T++I  ++P+
Sbjct: 4   ILGIDPGSRVTGYGVIRQNGRHLEYLGSGAIRTQV-EDLPTRLKRIYASVTEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR  AI++     +PV EYA   IK+ V+G+G  DK Q+
Sbjct: 63  MFAIEQVFMAKNADSALKLGQARGTAIVAAVNHNLPVFEYAARLIKQTVVGIGSADKVQV 122

Query: 127 HMMLKMLMPESFFKG 141
             M+  ++  S    
Sbjct: 123 QEMVTRILKLSDKPQ 137


>gi|260912902|ref|ZP_05919387.1| crossover junction endodeoxyribonuclease RuvC [Pasteurella dagmatis
           ATCC 43325]
 gi|260632892|gb|EEX51058.1| crossover junction endodeoxyribonuclease RuvC [Pasteurella dagmatis
           ATCC 43325]
          Length = 190

 Score =  193 bits (491), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 53/135 (39%), Positives = 85/135 (62%), Gaps = 1/135 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I + V + L  RL ++Y G++++I  ++PE
Sbjct: 4   ILGIDPGSRVTGYGVIRQTGRQLEYLGSGVIRTSV-EDLPTRLKRIYSGVSEIILQFQPE 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+E+VF+ K+A + LKLGQAR  AI++     +PV EYA   +K+ V+G+G  DK Q+
Sbjct: 63  MFAIEEVFLAKNANSALKLGQARGAAIVAAVNQNLPVFEYAARLVKQTVVGIGSADKIQV 122

Query: 127 HMMLKMLMPESFFKG 141
             M+  ++  S    
Sbjct: 123 QDMVTRILKLSEKPQ 137


>gi|269123749|ref|YP_003306326.1| crossover junction endodeoxyribonuclease RuvC [Streptobacillus
           moniliformis DSM 12112]
 gi|268315075|gb|ACZ01449.1| crossover junction endodeoxyribonuclease RuvC [Streptobacillus
           moniliformis DSM 12112]
          Length = 200

 Score =  193 bits (491), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 35/136 (25%), Positives = 69/136 (50%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R+IGIDPG    G+ I+D     +  +  G I +     +  RL Q++  L  +I  ++
Sbjct: 1   MRVIGIDPGTAIIGYSILDFKNSKVELIDYGCIYTDKDLPMPERLEQIFFKLETLINMYK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  A+E++F  K+    + + QAR + +    ++ I +  Y P  +K  + G G  +KK
Sbjct: 61  PDHMAIEELFFFKNQKTIITVAQARGVIVAKAQISGIEIFNYTPLQVKTGITGYGRAEKK 120

Query: 125 QIHMMLKMLMPESFFK 140
           Q+  M+++++      
Sbjct: 121 QVQEMIRVILKLDEIP 136


>gi|99082213|ref|YP_614367.1| Holliday junction resolvase [Ruegeria sp. TM1040]
 gi|99038493|gb|ABF65105.1| crossover junction endodeoxyribonuclease RuvC [Ruegeria sp. TM1040]
          Length = 188

 Score =  193 bits (491), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 79/162 (48%), Positives = 111/162 (68%), Gaps = 1/162 (0%)

Query: 4   SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
            +RI+GIDPGLR  GWG+++  G  L  V++G   S     L  RL  L+  +T++I  +
Sbjct: 23  GMRILGIDPGLRTLGWGVIESNGARLSHVANGLCHSD-GDDLGERLLSLHNQVTEIIDAY 81

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RP++AA+EQ FVNKD   TLKLGQAR +A+L+ A A +P  EYAPN +KK V+GVGH +K
Sbjct: 82  RPDQAAIEQTFVNKDGAGTLKLGQARGVALLTLAKAGLPTGEYAPNRVKKTVVGVGHAEK 141

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
           +Q+  M+K+ +P    +G DAADALAIA+CHAY+  S   ++
Sbjct: 142 EQVLHMVKLQLPGCAPRGADAADALAIAICHAYYGGSNQRQL 183


>gi|241761372|ref|ZP_04759460.1| crossover junction endodeoxyribonuclease RuvC [Zymomonas mobilis
           subsp. mobilis ATCC 10988]
 gi|241374279|gb|EER63776.1| crossover junction endodeoxyribonuclease RuvC [Zymomonas mobilis
           subsp. mobilis ATCC 10988]
          Length = 169

 Score =  193 bits (491), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 75/159 (47%), Positives = 102/159 (64%)

Query: 4   SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
            +  +G+DPGL  TGWG + V G+ L  +++G I +    +LA RL  L++ L  VI + 
Sbjct: 2   PMIFLGLDPGLGTTGWGAITVEGNRLSHIANGQIRTGPSMALARRLALLHDALAAVIASH 61

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +PE AAVE+V  N +A +TLKLGQAR IA+ S A A + V EY PN +KKAV+G G  DK
Sbjct: 62  QPEMAAVEEVLGNSNAQSTLKLGQARGIALFSLAEAGLSVGEYHPNVVKKAVVGTGSADK 121

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGY 162
           KQ+  M+  L+P     G DAADALA+A+ HA+H  S  
Sbjct: 122 KQVQAMVSRLLPGVKLAGPDAADALAVAITHAHHHASAR 160


>gi|90426277|ref|YP_534647.1| Holliday junction resolvase [Rhodopseudomonas palustris BisB18]
 gi|122995258|sp|Q20X08|RUVC_RHOPB RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|90108291|gb|ABD90328.1| Holliday junction endonuclease RuvC [Rhodopseudomonas palustris
           BisB18]
          Length = 175

 Score =  193 bits (491), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 93/167 (55%), Positives = 120/167 (71%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           +R+ IRI+GIDPGLRRTGWG+++  G+ L F+  G++       LA RL +++ GL  V+
Sbjct: 6   IRQPIRILGIDPGLRRTGWGVIESCGNRLVFIGCGSVEPDNDLPLASRLLEIHHGLAKVL 65

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             + P EAAVEQ FVNKDA ATLKLGQAR IA+L+PAL  I V+EYAPN IKK VIG GH
Sbjct: 66  AEFVPAEAAVEQTFVNKDAGATLKLGQARGIAMLAPALVGIAVAEYAPNLIKKTVIGAGH 125

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
            DK QI MMLK+L+P++  K  DAADALAIA+ HA+H      ++ +
Sbjct: 126 ADKAQIQMMLKILLPKAEPKTADAADALAIAITHAHHRGGALLRLKA 172


>gi|229846402|ref|ZP_04466510.1| Holliday junction resolvase [Haemophilus influenzae 7P49H1]
 gi|229810495|gb|EEP46213.1| Holliday junction resolvase [Haemophilus influenzae 7P49H1]
          Length = 190

 Score =  192 bits (490), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 54/135 (40%), Positives = 86/135 (63%), Gaps = 1/135 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G +L ++ SG I + V + L  RL ++Y G+T++I  ++P+
Sbjct: 4   ILGIDPGSRITGYGVIRQTGRHLEYLGSGAIRTQV-EDLPTRLKRIYAGVTEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR  AI++     +PV EYA   +K+ V+G+G  DK Q+
Sbjct: 63  MFAIEQVFMAKNADSALKLGQARGTAIVAAVNHDLPVFEYAARLVKQTVVGIGSADKVQV 122

Query: 127 HMMLKMLMPESFFKG 141
             M+  ++  S    
Sbjct: 123 QEMVTRILKLSDKPQ 137


>gi|163742242|ref|ZP_02149630.1| Holliday junction resolvase [Phaeobacter gallaeciensis 2.10]
 gi|161384572|gb|EDQ08953.1| Holliday junction resolvase [Phaeobacter gallaeciensis 2.10]
          Length = 165

 Score =  192 bits (490), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 77/161 (47%), Positives = 109/161 (67%), Gaps = 1/161 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGLR  GWG+++  G  L  V++G   +     L  RL  L+  + +VI  +R
Sbjct: 1   MRILGIDPGLRNLGWGVIESHGTRLSHVANGV-CTSDGDDLGERLLSLHNQVIEVIAAYR 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P++AA+EQ FVNKD   TLKLGQAR +A+++ A A +PV EYAPN +KK V+GVGH  K+
Sbjct: 60  PDQAAIEQTFVNKDGAGTLKLGQARGVALMTLAQAGLPVGEYAPNRVKKTVVGVGHAAKE 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
           QI  M+K+ +P    K  DAADALAIA+CHA++  +   ++
Sbjct: 120 QILHMVKLQLPGCLPKNADAADALAIAICHAFYGGTQQRQL 160


>gi|238898057|ref|YP_002923738.1| Holliday junction nuclease [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|259495689|sp|C4K4U7|RUVC_HAMD5 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|229465816|gb|ACQ67590.1| Holliday junction nuclease [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 159

 Score =  192 bits (490), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 53/134 (39%), Positives = 84/134 (62%), Gaps = 1/134 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++    + L ++ SG I +     L  +L  +Y G+T++I  +RP+
Sbjct: 4   ILGIDPGSRITGYGVISEKKNQLIYLGSGCIRTL-DNGLPHKLKLIYAGVTEIISQFRPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
              +EQVF++K+A + LKLGQAR +AI++ A   +PV EYA   +K+ V+G G  DKKQ+
Sbjct: 63  FFCIEQVFMSKNADSALKLGQARGVAIVAAANQNLPVFEYAARQVKQTVVGNGAADKKQV 122

Query: 127 HMMLKMLMPESFFK 140
             M++ L+      
Sbjct: 123 QHMVRYLLKLPSAP 136


>gi|86139157|ref|ZP_01057727.1| Holliday junction resolvase [Roseobacter sp. MED193]
 gi|85824001|gb|EAQ44206.1| Holliday junction resolvase [Roseobacter sp. MED193]
          Length = 165

 Score =  192 bits (490), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 81/161 (50%), Positives = 111/161 (68%), Gaps = 1/161 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGLR  GWG+++  G  L  V++G   +     L  RL  L+  +T+VI+ + 
Sbjct: 1   MRILGIDPGLRNLGWGVIESQGSRLSHVANGV-CTSDGDDLGERLLSLHNQVTEVIEAYA 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P +AA+EQ FVNKD VATLKLGQAR +A+L+ A A +P  EYAPN +KK V+GVGH  K+
Sbjct: 60  PTQAAIEQTFVNKDGVATLKLGQARGVALLTLAKAGLPTGEYAPNRVKKTVVGVGHASKE 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
           QI  M+K+ +P    KG DAADALAIA+CHAY+  +   ++
Sbjct: 120 QIIHMVKLQLPGCAPKGADAADALAIAICHAYYGGTQQRQL 160


>gi|332673319|gb|AEE70136.1| crossover junction endoribonuclease subunit C [Helicobacter pylori
           83]
          Length = 168

 Score =  192 bits (490), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 80/159 (50%), Gaps = 2/159 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPG R+ G+ I+    + L  +++G I       L  ++  L E L  ++  + 
Sbjct: 9   MRILGIDPGSRKCGYAIISHTSNKLSLITAGFIN-ITTTRLQEQILDLIEALDCLLDRYE 67

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
             E A+E +F   +  + +KL Q R    L         SEY P  +KKA+ G G   K+
Sbjct: 68  VNEVAIEDIFFGYNPKSVIKLAQFRGALSLKILERIGNFSEYTPLQVKKALTGNGKAAKE 127

Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHANSGY 162
           Q+  M+K L+   S  K  D +DA+A+A+ HA   ++  
Sbjct: 128 QVAFMVKRLLNITSEIKPLDISDAIAVAITHAQRTHAQR 166


>gi|188580170|ref|YP_001923615.1| Holliday junction resolvase [Methylobacterium populi BJ001]
 gi|238692870|sp|B1Z922|RUVC_METPB RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|179343668|gb|ACB79080.1| crossover junction endodeoxyribonuclease RuvC [Methylobacterium
           populi BJ001]
          Length = 189

 Score =  192 bits (490), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 75/140 (53%), Positives = 99/140 (70%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M   +RI+GIDPGLRRTGWG++   G  L +++ G + S     LA RL +L+EGLT V+
Sbjct: 1   MTTDVRILGIDPGLRRTGWGLITARGTKLSYLACGVVTSDGDLPLALRLRELHEGLTRVL 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
               P+E +VE+ FVNKDA ATLKLG ARA+A+L PALA +PV+EYA N +KK V G GH
Sbjct: 61  TTHAPDEVSVEETFVNKDAQATLKLGHARAVALLVPALAGLPVAEYAANLVKKTVAGNGH 120

Query: 121 GDKKQIHMMLKMLMPESFFK 140
            +K QI  M+K L+P++ FK
Sbjct: 121 AEKVQIQAMVKFLLPKAEFK 140


>gi|71909672|ref|YP_287259.1| crossover junction endodeoxyribonuclease RuvC [Dechloromonas
           aromatica RCB]
 gi|97274763|sp|Q478E2|RUVC_DECAR RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|71849293|gb|AAZ48789.1| Crossover junction endodeoxyribonuclease RuvC [Dechloromonas
           aromatica RCB]
          Length = 179

 Score =  192 bits (490), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 58/133 (43%), Positives = 87/133 (65%)

Query: 6   RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           RI+GIDPGLR TG+G++++ G  L +V+SG I S  ++SL  R+  L+ G+++VI  ++P
Sbjct: 7   RILGIDPGLRVTGFGVIELHGKQLVYVASGCIKSNDKESLPERIKTLFAGISEVIATYQP 66

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
            +AAVE+VFVN +  +TL LGQAR  AI +   A +PV+EY     K+AV+G G   K Q
Sbjct: 67  NQAAVEKVFVNVNPQSTLLLGQARGAAISALVHADLPVAEYTALQTKQAVVGHGKAAKDQ 126

Query: 126 IHMMLKMLMPESF 138
           +  M+  L+    
Sbjct: 127 VQAMVVRLLNLPG 139


>gi|328542536|ref|YP_004302645.1| Crossover junction endodeoxyribonuclease ruvC [polymorphum gilvum
           SL003B-26A1]
 gi|326412282|gb|ADZ69345.1| Crossover junction endodeoxyribonuclease ruvC [Polymorphum gilvum
           SL003B-26A1]
          Length = 171

 Score =  192 bits (490), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 95/168 (56%), Positives = 124/168 (73%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M   IRI+GIDPGLRRTGWG+++  G+ L F+ +GT+ S  ++ LA RL QL++GL+ ++
Sbjct: 1   MMHPIRILGIDPGLRRTGWGLIEALGNRLTFLGAGTVTSDDKRGLAERLVQLHDGLSAIV 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
               P EAAVE  FVNKDA ATLKLGQAR IA+L PALA +PV+EYAPN +KK V+G GH
Sbjct: 61  AREEPAEAAVEHTFVNKDAGATLKLGQARGIALLVPALAGLPVAEYAPNLVKKTVVGTGH 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
            +K+QI  M+K+LMP + F   DAADALAIA+CHA+H  S   ++A  
Sbjct: 121 AEKEQIRAMVKILMPRARFDTDDAADALAIAICHAHHRGSAQARLAEA 168


>gi|150397837|ref|YP_001328304.1| Holliday junction resolvase [Sinorhizobium medicae WSM419]
 gi|187611451|sp|A6UCT9|RUVC_SINMW RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|150029352|gb|ABR61469.1| crossover junction endodeoxyribonuclease RuvC [Sinorhizobium
           medicae WSM419]
          Length = 167

 Score =  192 bits (489), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 105/163 (64%), Positives = 135/163 (82%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           IRIIG+DPGLRRTGWGI++  G++L F++SGTI S     LA RLCQL++GL +V+ +++
Sbjct: 2   IRIIGVDPGLRRTGWGIIETLGNSLRFIASGTITSDGDMDLASRLCQLHDGLAEVVHSYQ 61

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P EAAVEQ FVNKDA ATLKLGQAR IA+L PA A + V+EYAPN +KKAVIGVGHG+K+
Sbjct: 62  PHEAAVEQTFVNKDATATLKLGQARGIAMLVPARAGLRVAEYAPNAVKKAVIGVGHGEKQ 121

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
           QIHMMLK+LMP++ FKG DAADALAIA+CHA++  +   ++A+
Sbjct: 122 QIHMMLKVLMPKAEFKGNDAADALAIAICHAHNRQAITSRLAA 164


>gi|212550497|ref|YP_002308814.1| Holliday junction resolvase [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|212548735|dbj|BAG83403.1| crossover junction endodeoxyribonuclease RuvC [Candidatus
           Azobacteroides pseudotrichonymphae genomovar. CFP2]
          Length = 190

 Score =  192 bits (489), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 47/165 (28%), Positives = 80/165 (48%), Gaps = 7/165 (4%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           MR+   I+G+DPG    G+G++ ++  N   +          +S   RL  ++  + ++I
Sbjct: 1   MREERIILGVDPGTSVMGYGLIRISEGNPFLLKMEVFKLNKSESHYKRLLHIFNKILELI 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             + P E A+E  F+ ++  + LKLG+ + + I +     I V EY P  IK AV G G 
Sbjct: 61  DEFFPNELAIESPFLGQNVQSMLKLGRVQGVVIAAAMSRSISVYEYTPLKIKMAVTGNGR 120

Query: 121 GDKKQIHMMLKMLMPESFFK-------GKDAADALAIAVCHAYHA 158
             K+Q+  +L+  +  S  +         DA D LA A+CH +  
Sbjct: 121 ASKEQVAGILRNYLRLSKDRTQLDEYLSLDATDGLATALCHFFQG 165


>gi|198274694|ref|ZP_03207226.1| hypothetical protein BACPLE_00850 [Bacteroides plebeius DSM 17135]
 gi|198272141|gb|EDY96410.1| hypothetical protein BACPLE_00850 [Bacteroides plebeius DSM 17135]
          Length = 189

 Score =  192 bits (489), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 55/165 (33%), Positives = 85/165 (51%), Gaps = 6/165 (3%)

Query: 1   MRKSIR---IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLT 57
           M + ++   I+GIDPG    G+G++ V G     ++ G I          +L  +YE + 
Sbjct: 1   MIQPVKEKIILGIDPGTNIMGYGVLKVTGVKPEVMTLGVIDLRKCTDSYLKLKHIYERVQ 60

Query: 58  DVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIG 117
            +I ++ P+E A+E  F  K+  + LKLG+A+ +AI++     IPV+EYAP  IK A+ G
Sbjct: 61  GIISSYLPDELAIEAPFFGKNVQSMLKLGRAQGVAIVAALTRDIPVTEYAPLKIKMAITG 120

Query: 118 VGHGDKKQIHMMLKMLMPE---SFFKGKDAADALAIAVCHAYHAN 159
            G   K+Q+  MLK ++           DA DAL  A CH     
Sbjct: 121 NGQASKEQVADMLKRMLHIPDSEMGPFMDATDALGAAYCHYLQMG 165


>gi|317009115|gb|ADU79695.1| Holliday junction resolvase [Helicobacter pylori India7]
          Length = 157

 Score =  192 bits (489), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 49/154 (31%), Positives = 79/154 (51%), Gaps = 2/154 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPG R+ G+ I+    + L  +++G I       L  ++  L E L  ++  + 
Sbjct: 1   MRILGIDPGSRKCGYAIISHTSNKLSLITAGFIN-ITTTRLQEQILDLIEALDCLLDRYE 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
            +E A+E +F   +  + +KL Q R    L         SEY P  +KKA+ G G   K+
Sbjct: 60  VDEVAIEDIFFAYNPKSVIKLAQFRGALSLKILERIGNFSEYTPLQVKKALTGNGKAAKE 119

Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYH 157
           Q+  M+K L+   S  K  D +DA+A+A+ HA  
Sbjct: 120 QVAFMVKRLLNITSEIKPLDISDAIAVAITHAQR 153


>gi|145628664|ref|ZP_01784464.1| Holliday junction resolvase [Haemophilus influenzae 22.1-21]
 gi|148827466|ref|YP_001292219.1| Holliday junction resolvase [Haemophilus influenzae PittGG]
 gi|166233196|sp|A5UGD0|RUVC_HAEIG RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|144979134|gb|EDJ88820.1| Holliday junction resolvase [Haemophilus influenzae 22.1-21]
 gi|148718708|gb|ABQ99835.1| Holliday junction resolvase [Haemophilus influenzae PittGG]
          Length = 190

 Score =  192 bits (489), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 54/135 (40%), Positives = 86/135 (63%), Gaps = 1/135 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G +L ++ SG I + V + L  RL ++Y G+T++I  ++P+
Sbjct: 4   ILGIDPGSRVTGYGVIRQTGRHLEYLGSGAIRTQV-EDLPTRLKRIYAGVTEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR  AI++     +PV EYA   +K+ V+G+G  DK Q+
Sbjct: 63  MFAIEQVFMAKNADSALKLGQARGTAIVAAVNHDLPVFEYAARLVKQTVVGIGSADKVQV 122

Query: 127 HMMLKMLMPESFFKG 141
             M+  ++  S    
Sbjct: 123 QEMVTRILKLSDKPQ 137


>gi|240851226|ref|YP_002972629.1| Holliday junction resolvase ruvC [Bartonella grahamii as4aup]
 gi|240268349|gb|ACS51937.1| Holliday junction resolvase ruvC [Bartonella grahamii as4aup]
          Length = 171

 Score =  192 bits (489), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 91/139 (65%), Positives = 117/139 (84%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M ++IRIIGIDPGLRRTGWG++DVAG+ L F+++GT+ S V+  LA RLCQ+++GL++V+
Sbjct: 1   MAETIRIIGIDPGLRRTGWGVIDVAGNRLQFIAAGTVSSDVKCELASRLCQIHKGLSEVV 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             + P EAAVE VFVNKDA ATLKLGQARAIA+L PA A +PV EYAPN +KK+VIGVGH
Sbjct: 61  HQFMPHEAAVEHVFVNKDATATLKLGQARAIALLVPAQANLPVFEYAPNKVKKSVIGVGH 120

Query: 121 GDKKQIHMMLKMLMPESFF 139
           G K+QIHMM+K+L+P + F
Sbjct: 121 GAKEQIHMMIKVLLPRAEF 139


>gi|300870811|ref|YP_003785682.1| crossover junction endodeoxyribonuclease RuvC [Brachyspira
           pilosicoli 95/1000]
 gi|300688510|gb|ADK31181.1| crossover junction endodeoxyribonuclease, RuvC [Brachyspira
           pilosicoli 95/1000]
          Length = 157

 Score =  192 bits (489), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 51/153 (33%), Positives = 81/153 (52%), Gaps = 1/153 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +  +GIDPG  R G+  V+        V+SG I +   +    RL  +Y  L  +IK ++
Sbjct: 1   MITLGIDPGFARCGYAFVESKNSEYKIVNSGLIETFSNEEYNQRLSFIYTQLDSLIKQYK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ A++E++F +K+    +K+ +AR + IL+  L  I   EY P  IK  + G G+ +K 
Sbjct: 61  PDNASIEELFFSKNTKTAIKVAEARGVIILALTLNNIEFREYKPREIKSQITGNGNANKD 120

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYH 157
            +  M+  L   S  K  D ADA+AIA+ HA  
Sbjct: 121 AVIKMVN-LFTGSNIKQDDTADAVAIALAHASR 152


>gi|261868503|ref|YP_003256425.1| Holliday junction resolvase [Aggregatibacter actinomycetemcomitans
           D11S-1]
 gi|261413835|gb|ACX83206.1| Holliday junction resolvase [Aggregatibacter actinomycetemcomitans
           D11S-1]
          Length = 190

 Score =  192 bits (488), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 66/162 (40%), Positives = 102/162 (62%), Gaps = 1/162 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G +L ++ SG I + V + L  RL ++Y  +T++I  ++P+
Sbjct: 4   ILGIDPGSRVTGYGVIRQNGRHLEYLGSGAIRTQV-EDLPTRLKRIYASVTEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR  AI++     +PV EYA   IK+ V+G+G  DK Q+
Sbjct: 63  MFAIEQVFMAKNADSALKLGQARGTAIVAAVNHNLPVFEYAARLIKQTVVGIGSADKVQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
             M+  ++  S     DAADALAIA+ HA+     ++  +S 
Sbjct: 123 QEMVTRILKLSDKPQADAADALAIAITHAHSIQHSFHVASSA 164


>gi|262037582|ref|ZP_06011038.1| crossover junction endodeoxyribonuclease RuvC [Leptotrichia
           goodfellowii F0264]
 gi|261748404|gb|EEY35787.1| crossover junction endodeoxyribonuclease RuvC [Leptotrichia
           goodfellowii F0264]
          Length = 189

 Score =  192 bits (488), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 39/136 (28%), Positives = 71/136 (52%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPG    G+ ++D        +  G I +   + +  RL ++Y+GL ++IK W 
Sbjct: 1   MRILGIDPGTAIVGYSVIDFEKGKYKVLDYGCIYTDKDEDMPVRLEEIYDGLDNIIKLWE 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P + A+E+++  K+    +K+GQAR +  L      + +  Y P  +K  +   G  +KK
Sbjct: 61  PSDMAIEELYFFKNQKTIVKVGQARGVITLVGQKNNMNIYSYTPLQVKMGIASYGRAEKK 120

Query: 125 QIHMMLKMLMPESFFK 140
           QI  M+K+++      
Sbjct: 121 QIQEMVKIILGLEEIP 136


>gi|148825407|ref|YP_001290160.1| Holliday junction resolvase [Haemophilus influenzae PittEE]
 gi|166233195|sp|A5UAH6|RUVC_HAEIE RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|148715567|gb|ABQ97777.1| Holliday junction resolvase [Haemophilus influenzae PittEE]
 gi|309972526|gb|ADO95727.1| Holliday junction resolvasome, endodeoxyribonuclease subunit
           [Haemophilus influenzae R2846]
          Length = 190

 Score =  192 bits (488), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 54/135 (40%), Positives = 86/135 (63%), Gaps = 1/135 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G +L ++ SG I + V + L  RL ++Y G+T++I  ++P+
Sbjct: 4   ILGIDPGSRVTGYGVIRQTGRHLEYLGSGAIRTQV-EDLPTRLKRIYAGVTEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR  AI++     +PV EYA   +K+ V+G+G  DK Q+
Sbjct: 63  MFAIEQVFMAKNADSALKLGQARGTAIVAAVNHDLPVFEYAARLVKQTVVGIGSADKVQV 122

Query: 127 HMMLKMLMPESFFKG 141
             M+  ++  S    
Sbjct: 123 QEMVTRILKLSDKPQ 137


>gi|261839310|gb|ACX99075.1| Holliday junction resolvase [Helicobacter pylori 52]
          Length = 157

 Score =  192 bits (488), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 49/154 (31%), Positives = 78/154 (50%), Gaps = 2/154 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPG R+ G+ I+    + L  +++G I       L  ++  L E L  ++  + 
Sbjct: 1   MRILGIDPGSRKCGYAIISHTSNKLSLITAGFIN-ITTTRLQEQILDLIEALDCLLDRYE 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
             E A+E +F   +  + +KL Q R    L         SEY P  +KKA+ G G   K+
Sbjct: 60  VNEVAIEDIFFAYNPKSVIKLAQFRGALSLKILERIGNFSEYTPLQVKKALTGNGKATKE 119

Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYH 157
           Q+  M+K L+   S  K  D +DA+A+A+ HA  
Sbjct: 120 QVAFMVKRLLNITSEIKPLDISDAIAVAITHAQR 153


>gi|332878375|ref|ZP_08446099.1| crossover junction endodeoxyribonuclease RuvC [Capnocytophaga sp.
           oral taxon 329 str. F0087]
 gi|332683700|gb|EGJ56573.1| crossover junction endodeoxyribonuclease RuvC [Capnocytophaga sp.
           oral taxon 329 str. F0087]
          Length = 192

 Score =  192 bits (488), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 3/156 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG    G+G++ V G+     + G I          +L +++E +T +I+++ P+
Sbjct: 11  ILGIDPGTNLMGYGVLRVTGNKAVMETMGVIDLRKYAGPYLKLGRIFERVTGIIESYLPD 70

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E  F  K+  + LKLG+A+ +AI +     IP++EYAP  IK A+ G G   K+Q+
Sbjct: 71  EMAIEAPFFGKNVQSMLKLGRAQGVAIAAAIHRDIPITEYAPLKIKMAITGNGQASKEQV 130

Query: 127 HMMLKMLMP---ESFFKGKDAADALAIAVCHAYHAN 159
             ML  ++    E      DA D LA A CH     
Sbjct: 131 AGMLTRMLHIREEDMLPYMDATDGLAAAYCHFLQMG 166


>gi|9107000|gb|AAF84711.1|AE004010_8 holliday junction resolvase, endodeoxyribonuclease [Xylella
           fastidiosa 9a5c]
          Length = 204

 Score =  192 bits (488), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 69/160 (43%), Positives = 100/160 (62%), Gaps = 1/160 (0%)

Query: 3   KSIRIIGIDPGLRRTGWGIVDVAG-DNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           +  RI+GIDPG +RTG G++DV        V    +V   + S A RL QL  GL+ VI+
Sbjct: 31  QMTRILGIDPGSQRTGVGVIDVDEYGCSRHVYHAPLVLLGQSSFAGRLKQLLLGLSAVIE 90

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
            + P+E A+E+VF++K+A + LKLGQAR +AI +  L  +PV EYA   IK AV+G G  
Sbjct: 91  EYSPKEVAIEKVFMSKNADSALKLGQARGVAISAVVLRDLPVHEYAARQIKLAVVGRGGA 150

Query: 122 DKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSG 161
           DK+QI  M+ +++        DAADALA+A+ HA+ + + 
Sbjct: 151 DKQQIQHMVGVMLNLQGRLQSDAADALAVAITHAHVSATA 190


>gi|315126270|ref|YP_004068273.1| Holliday junction nuclease [Pseudoalteromonas sp. SM9913]
 gi|315014784|gb|ADT68122.1| Holliday junction nuclease [Pseudoalteromonas sp. SM9913]
          Length = 174

 Score =  192 bits (488), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 66/162 (40%), Positives = 97/162 (59%), Gaps = 2/162 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G+V   G    ++ SG I          RL  +Y+G+T +I+ + PE
Sbjct: 4   ILGIDPGSRLTGYGVVAHQGAKFTYLGSGCIKL-ADHDFPTRLKMIYQGITQLIEQFSPE 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+E+VF+  +  + LKLGQAR  AI+  ++A +PV EY+   IK+AV+G G  DK Q+
Sbjct: 63  TFAIEKVFMAHNPDSALKLGQARGAAIVGASMADLPVFEYSARQIKQAVVGNGGADKSQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
             M+K ++        DAADALAIA+CHA+   +   K+A  
Sbjct: 123 QHMVKNILKLPGTPQADAADALAIAICHAHSEQN-LIKLAGS 163


>gi|255692852|ref|ZP_05416527.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides
           finegoldii DSM 17565]
 gi|260621418|gb|EEX44289.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides
           finegoldii DSM 17565]
          Length = 188

 Score =  192 bits (488), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 49/172 (28%), Positives = 86/172 (50%), Gaps = 6/172 (3%)

Query: 1   MRKSIR---IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLT 57
           M + ++   I+GIDPG    G+G++ + G     ++ G I      +   +L  ++E + 
Sbjct: 1   MIQPVKEKIILGIDPGTTIMGYGVLRIKGTKPEMIAMGIIDLRKFANHYLKLRHIHERVL 60

Query: 58  DVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIG 117
            +I+++ P+E A+E  F  K+  + LKLG+A+ +A+ +     IP+ EYAP  IK A+ G
Sbjct: 61  SIIESYLPDELAIEAPFFGKNVQSMLKLGRAQGVAMAAALSRDIPIIEYAPLKIKMAITG 120

Query: 118 VGHGDKKQIHMMLKMLM---PESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
            G   ++Q+  ML+ ++           DA D LA A CH         +  
Sbjct: 121 NGQASEEQVADMLQRMLHFSKADMPTFMDATDGLAAAYCHFLQMGRPAVEKG 172


>gi|332534228|ref|ZP_08410073.1| crossover junction endodeoxyribonuclease RuvC [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332036308|gb|EGI72779.1| crossover junction endodeoxyribonuclease RuvC [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 174

 Score =  192 bits (488), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 67/162 (41%), Positives = 97/162 (59%), Gaps = 2/162 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G+V   G    ++ SG I          RL  +Y+G+T +I+ + PE
Sbjct: 4   ILGIDPGSRLTGYGVVAHQGSKFTYLGSGCIKL-ADHPFPVRLKMIYQGITQLIEQFSPE 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+E+VF+  +  + LKLGQAR  AI+  A+A +PV EY+   IK+AV+G G  DK Q+
Sbjct: 63  TFAIEKVFMAHNPDSALKLGQARGAAIVGAAMADLPVFEYSARQIKQAVVGNGGADKTQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
             M+K ++        DAADALAIA+CHA+   +   K+A  
Sbjct: 123 QHMVKNILKLPGTPQADAADALAIAICHAHSEQN-LIKLAGS 163


>gi|317177295|dbj|BAJ55084.1| Holliday junction resolvase [Helicobacter pylori F16]
          Length = 160

 Score =  192 bits (488), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 50/159 (31%), Positives = 80/159 (50%), Gaps = 2/159 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPG R+ G+ I+    + L  +++G I       L  ++  L E L  ++  + 
Sbjct: 1   MRILGIDPGSRKCGYAIISHTSNKLSLITAGFIN-ITTTRLQEQILDLIEALDCLLDRYE 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
             E A+E +F   +  + +KL Q R    L         SEY P  +KKA+ G G   K+
Sbjct: 60  VNEVAIEDIFFGYNPKSVIKLAQFRGALSLKILERIGNFSEYTPLQVKKALTGNGKAAKE 119

Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHANSGY 162
           Q+  M+K L+   S  K  D +DA+AIA+ HA   ++  
Sbjct: 120 QVAFMVKRLLNITSEIKPLDISDAIAIAITHAQRTHAQR 158


>gi|303250097|ref|ZP_07336299.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307246068|ref|ZP_07528150.1| Crossover junction endodeoxyribonuclease ruvC [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307250409|ref|ZP_07532356.1| Crossover junction endodeoxyribonuclease ruvC [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|307252791|ref|ZP_07534682.1| Crossover junction endodeoxyribonuclease ruvC [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307255050|ref|ZP_07536868.1| Crossover junction endodeoxyribonuclease ruvC [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307259486|ref|ZP_07541211.1| Crossover junction endodeoxyribonuclease ruvC [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|302651160|gb|EFL81314.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306853003|gb|EFM85226.1| Crossover junction endodeoxyribonuclease ruvC [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306857538|gb|EFM89647.1| Crossover junction endodeoxyribonuclease ruvC [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306859823|gb|EFM91845.1| Crossover junction endodeoxyribonuclease ruvC [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306861923|gb|EFM93899.1| Crossover junction endodeoxyribonuclease ruvC [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306866422|gb|EFM98285.1| Crossover junction endodeoxyribonuclease ruvC [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
          Length = 192

 Score =  192 bits (488), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 54/135 (40%), Positives = 84/135 (62%), Gaps = 1/135 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G +L ++ SG I + V   L  RL ++Y G+T++I  ++P+
Sbjct: 4   ILGIDPGSRVTGYGVIRQTGRHLEYLGSGAIRTSVD-DLPTRLKRIYAGVTEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR  AI++     +PV EYA   +K+ V G+G  DK Q+
Sbjct: 63  MFAIEQVFMAKNADSALKLGQARGTAIVAAVNHDLPVFEYAARLVKQTVTGIGSADKIQV 122

Query: 127 HMMLKMLMPESFFKG 141
             M+  ++  S    
Sbjct: 123 QDMVTRMLQLSSKPQ 137


>gi|323138243|ref|ZP_08073315.1| crossover junction endodeoxyribonuclease RuvC [Methylocystis sp.
           ATCC 49242]
 gi|322396495|gb|EFX99024.1| crossover junction endodeoxyribonuclease RuvC [Methylocystis sp.
           ATCC 49242]
          Length = 168

 Score =  191 bits (487), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 84/167 (50%), Positives = 116/167 (69%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           +   IRI+GIDPGLR TGWG+++  G  L FV+ G + S     +  RL QL+EGL  VI
Sbjct: 2   ISPPIRILGIDPGLRNTGWGVIESQGSRLSFVACGRVKSDGALDMGNRLRQLHEGLMQVI 61

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
            ++ P EAAVE+ FVN+D  +TLKLGQAR IA+++PALA + ++EYA N +KK V+G GH
Sbjct: 62  ADYGPHEAAVEETFVNRDPQSTLKLGQARGIALMAPALAGLVIAEYAANLVKKIVVGAGH 121

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
            DK QI MM+++L+P S     DAADALA+A+CHA H  +   + ++
Sbjct: 122 ADKAQIQMMVRVLLPASQATSADAADALAVAICHAQHRGARALRESA 168


>gi|207093361|ref|ZP_03241148.1| Holliday junction resolvase [Helicobacter pylori HPKX_438_AG0C1]
 gi|207108708|ref|ZP_03242870.1| Holliday junction resolvase [Helicobacter pylori HPKX_438_CA4C1]
          Length = 157

 Score =  191 bits (487), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 49/154 (31%), Positives = 78/154 (50%), Gaps = 2/154 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPG R+ G+ I+    + L  +++G I       L  ++  L E L  ++  + 
Sbjct: 1   MRILGIDPGSRKCGYAIISHTSNKLSLITAGFIN-ITTTRLQEQILDLIEALDCLLDRYE 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
             E A+E +F   +  + +KL Q R    L         SEY P  +KKA+ G G   K+
Sbjct: 60  VNEVAIEDIFFAYNPKSVIKLAQFRGALSLKILERIGNFSEYTPLQVKKALTGNGKATKE 119

Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYH 157
           Q+  M+K L+   S  K  D +DA+A+A+ HA  
Sbjct: 120 QVAFMVKRLLNITSEIKPLDISDAIAVAITHAQR 153


>gi|315586457|gb|ADU40838.1| crossover junction endoribonuclease subunit C [Helicobacter pylori
           35A]
          Length = 160

 Score =  191 bits (487), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 80/159 (50%), Gaps = 2/159 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPG R+ G+ I+    + L  +++G I       L  ++  L E L  ++  + 
Sbjct: 1   MRILGIDPGSRKCGYAIISHTSNKLSLITAGFIN-ITTTRLQEQILDLIEALDCLLDRYE 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
             E A+E +F   +  + +KL Q R    L         SEY P  +KKA+ G G   K+
Sbjct: 60  VNEVAIEDIFFGYNPKSVIKLAQFRGALSLKILERIGNFSEYTPLQVKKALTGNGKAAKE 119

Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHANSGY 162
           Q+  M+K L+   S  K  D +DA+A+A+ HA   ++  
Sbjct: 120 QVAFMVKRLLNITSEIKPLDISDAIAVAITHAQRTHAQR 158


>gi|322515241|ref|ZP_08068239.1| crossover junction endoribonuclease subunit C [Actinobacillus ureae
           ATCC 25976]
 gi|322118746|gb|EFX90952.1| crossover junction endoribonuclease subunit C [Actinobacillus ureae
           ATCC 25976]
          Length = 192

 Score =  191 bits (487), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 54/135 (40%), Positives = 84/135 (62%), Gaps = 1/135 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G +L ++ SG I + V   L  RL ++Y G+T++I  ++P+
Sbjct: 4   ILGIDPGSRVTGYGVIHQTGRHLEYLGSGAIRTSVD-DLPTRLKRIYAGVTEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR  AI++     +PV EYA   +K+ V G+G  DK Q+
Sbjct: 63  MFAIEQVFMAKNADSALKLGQARGTAIVAAVNHDLPVFEYAARLVKQTVTGIGSADKIQV 122

Query: 127 HMMLKMLMPESFFKG 141
             M+  ++  S    
Sbjct: 123 QDMVTRMLQLSSKPQ 137


>gi|217034487|ref|ZP_03439898.1| hypothetical protein HP9810_873g3 [Helicobacter pylori 98-10]
 gi|216943028|gb|EEC22507.1| hypothetical protein HP9810_873g3 [Helicobacter pylori 98-10]
          Length = 157

 Score =  191 bits (487), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 49/154 (31%), Positives = 78/154 (50%), Gaps = 2/154 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPG R+ G+ I+    + L  +++G I       L  ++  L E L  ++  + 
Sbjct: 1   MRILGIDPGSRKCGYAIISHTSNKLSLITAGFIN-ITTTRLQEQILDLIEALDCLLDRYE 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
             E A+E +F   +  + +KL Q R    L         SEY P  +KKA+ G G   K+
Sbjct: 60  VNEVAIEDIFFGYNPKSVIKLAQFRGALSLKILERVGNFSEYTPLQVKKALTGNGKAAKE 119

Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYH 157
           Q+  M+K L+   S  K  D +DA+A+A+ HA  
Sbjct: 120 QVAFMVKRLLNITSEIKPLDISDAIAVAITHAQR 153


>gi|68171947|ref|ZP_00545259.1| Crossover junction endodeoxyribonuclease RuvC [Ehrlichia
           chaffeensis str. Sapulpa]
 gi|88658422|ref|YP_506861.1| crossover junction endodeoxyribonuclease RuvC [Ehrlichia
           chaffeensis str. Arkansas]
 gi|123736421|sp|Q2GI72|RUVC_EHRCR RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|67998626|gb|EAM85367.1| Crossover junction endodeoxyribonuclease RuvC [Ehrlichia
           chaffeensis str. Sapulpa]
 gi|88599879|gb|ABD45348.1| crossover junction endodeoxyribonuclease RuvC [Ehrlichia
           chaffeensis str. Arkansas]
          Length = 156

 Score =  191 bits (487), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 51/156 (32%), Positives = 100/156 (64%), Gaps = 1/156 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++I+G+DPGL  TGW I+ V+ D +  +  GT+V+  ++    RL +++  + D+++ ++
Sbjct: 1   MKIMGLDPGLNCTGWSILSVSKD-IKLIDKGTVVTNSKEDTGQRLRKIHTDVLDILRLYQ 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
            + A++E++F+NK+  +++ L  AR I +L+ +   IPV EY+ N +KK++ G GH  K+
Sbjct: 60  VDSASMEEIFINKNPKSSISLCYARGILLLTLSTKDIPVFEYSTNYVKKSITGNGHAKKE 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           Q+  M++ ++        D +D++A+A+CHAY   S
Sbjct: 120 QVSFMIEKILNVKCSGTYDISDSIAVALCHAYSKKS 155


>gi|152996210|ref|YP_001341045.1| crossover junction endodeoxyribonuclease RuvC [Marinomonas sp.
           MWYL1]
 gi|150837134|gb|ABR71110.1| crossover junction endodeoxyribonuclease RuvC [Marinomonas sp.
           MWYL1]
          Length = 185

 Score =  191 bits (487), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 68/159 (42%), Positives = 105/159 (66%), Gaps = 1/159 (0%)

Query: 3   KSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
            + RI+ IDPG R TG+GIVDV      +VSSG I     ++L+ RL  +++ ++ ++  
Sbjct: 2   ATTRILAIDPGSRITGFGIVDVTNGKSIYVSSGCIRLP-DEALSVRLKYIFQNVSALLDE 60

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
           ++P E A+E+VF+ K+A + LKLGQAR  AI++ +L  + V EYA   +K++V+G G+ D
Sbjct: 61  YQPNEFAIEEVFLAKNANSALKLGQARGAAIVAASLKELIVHEYAARRVKQSVVGNGNAD 120

Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSG 161
           K Q+ MM+++L+  +     DAADALAIA+CHA    SG
Sbjct: 121 KAQVQMMVQLLLNITSKPQADAADALAIALCHANTRTSG 159


>gi|90580115|ref|ZP_01235923.1| Holliday junction resolvase [Vibrio angustum S14]
 gi|90439000|gb|EAS64183.1| Holliday junction resolvase [Vibrio angustum S14]
          Length = 173

 Score =  191 bits (487), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 66/151 (43%), Positives = 100/151 (66%), Gaps = 1/151 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G NL ++ SG I +     +  RL Q+Y G+++VI  ++P+
Sbjct: 4   ILGIDPGSRITGYGVIRQVGRNLEYLGSGCIRTSEPG-IPGRLKQIYAGVSEVITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+E+VF+ K+A + +KLGQAR  AI++   A +PVSEYA   IK+AV+G G  DK Q+
Sbjct: 63  FFAIEEVFMGKNASSAIKLGQARGSAIVAAVNADLPVSEYAARLIKQAVVGNGGADKAQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYH 157
             M+  ++  +     DAADALA+A+CHA+ 
Sbjct: 123 QHMVCSVLKLAGKPQADAADALAVAICHAHT 153


>gi|317178765|dbj|BAJ56553.1| Holliday junction resolvase [Helicobacter pylori F30]
          Length = 157

 Score =  191 bits (487), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 49/154 (31%), Positives = 78/154 (50%), Gaps = 2/154 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPG R+ G+ I+    + L  +++G I       L  ++  L E L  ++  + 
Sbjct: 1   MRILGIDPGSRKCGYAIISHTSNKLSLITAGFIN-ITTTRLQEQILDLIEALDCLLDRYE 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
             E A+E +F   +  + +KL Q R    L         SEY P  +KKA+ G G   K+
Sbjct: 60  VNEVAIEDIFFGHNPKSVIKLAQFRGALSLKILERIGNFSEYTPLQVKKALTGNGKAAKE 119

Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYH 157
           Q+  M+K L+   S  K  D +DA+A+A+ HA  
Sbjct: 120 QVAFMVKRLLNITSEIKPLDISDAIAVAITHAQR 153


>gi|291544343|emb|CBL17452.1| crossover junction endodeoxyribonuclease RuvC [Ruminococcus sp.
           18P13]
          Length = 168

 Score =  191 bits (487), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 39/136 (28%), Positives = 75/136 (55%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RIIGIDPG    G+G++D  G     +  G I++        RL  +YE +  +++ ++
Sbjct: 1   MRIIGIDPGYAIVGFGVLDYRGVEFTTLEYGAILTEAHTDFPQRLGNIYEDMCFILERFK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  A+EQ+F   +    + + QAR + +L+     +P++EY P+ +K+AV+G G  +K+
Sbjct: 61  PDALAIEQLFFYSNKTTGIDVAQARGVILLAAVQHGVPIAEYTPSQVKQAVVGYGKAEKR 120

Query: 125 QIHMMLKMLMPESFFK 140
           Q+  M + ++      
Sbjct: 121 QVMEMTRRILHLEQIP 136


>gi|311694933|gb|ADP97806.1| crossover junction endodeoxyribonuclease RuvC [marine bacterium
           HP15]
          Length = 175

 Score =  191 bits (487), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 65/154 (42%), Positives = 101/154 (65%), Gaps = 1/154 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+G+DPG R TG+G++   G ++ ++ SG I     + +A RL  +++ L  +I  +RPE
Sbjct: 4   ILGVDPGSRITGYGVIRADGRHIEYIDSGCIR-VGEKPMAERLQTIFQSLATLIGEYRPE 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+EQVF+ ++  + LKLGQAR  AI+S A + + V EY+   +K+AV+G G  DK Q+
Sbjct: 63  EFAIEQVFMARNPDSALKLGQARGAAIVSAANSGLAVHEYSARQVKQAVVGKGGADKSQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
             M+++L+  S     DAADALAIA+CHA+ + S
Sbjct: 123 QHMVQVLLSLSRKPQADAADALAIAMCHAHMSQS 156


>gi|167855799|ref|ZP_02478552.1| crossover junction endodeoxyribonuclease RuvC [Haemophilus parasuis
           29755]
 gi|219871141|ref|YP_002475516.1| Holliday junction resolvase [Haemophilus parasuis SH0165]
 gi|254767475|sp|B8F5G6|RUVC_HAEPS RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|167853078|gb|EDS24339.1| crossover junction endodeoxyribonuclease RuvC [Haemophilus parasuis
           29755]
 gi|219691345|gb|ACL32568.1| holliday junction resolvase [Haemophilus parasuis SH0165]
          Length = 192

 Score =  191 bits (487), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 54/135 (40%), Positives = 86/135 (63%), Gaps = 1/135 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G +L ++ SG I + V + L  RL ++Y G+T++I  ++P+
Sbjct: 4   ILGIDPGSRVTGYGVIRQTGRHLEYLGSGAIRTSV-EDLPTRLKRIYAGVTEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR  AI++     +PV EYA   +K+ V+G+G  DK Q+
Sbjct: 63  MFAIEQVFMAKNADSALKLGQARGTAIVAAVNHDLPVFEYAARLVKQTVVGIGSADKVQV 122

Query: 127 HMMLKMLMPESFFKG 141
             M+  ++  S    
Sbjct: 123 QDMVTRILQLSAKPQ 137


>gi|270157093|ref|ZP_06185750.1| crossover junction endodeoxyribonuclease RuvC [Legionella
           longbeachae D-4968]
 gi|289164496|ref|YP_003454634.1| Crossover junction endodeoxyribonuclease ruvC [Legionella
           longbeachae NSW150]
 gi|269989118|gb|EEZ95372.1| crossover junction endodeoxyribonuclease RuvC [Legionella
           longbeachae D-4968]
 gi|288857669|emb|CBJ11512.1| Crossover junction endodeoxyribonuclease ruvC [Legionella
           longbeachae NSW150]
          Length = 172

 Score =  191 bits (487), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 48/135 (35%), Positives = 84/135 (62%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++  +   + ++ SG I +     L+ +L Q+Y+G+  ++  + PE
Sbjct: 4   ILGIDPGSRITGYGLIKESDRKIEYIDSGCIRTTPDGELSQKLLQIYDGICQLMDQYSPE 63

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+EQVF++++  + LKLG AR +A+++ A  R+ VSEY+   IK+ V+G G  +K Q+
Sbjct: 64  EVAIEQVFMHENPNSALKLGHARGVAMVAAASHRVKVSEYSAREIKQTVVGYGAAEKNQV 123

Query: 127 HMMLKMLMPESFFKG 141
             M+  L+  +    
Sbjct: 124 SHMVVSLLALNKAPQ 138


>gi|78485237|ref|YP_391162.1| crossover junction endodeoxyribonuclease RuvC [Thiomicrospira
           crunogena XCL-2]
 gi|123555644|sp|Q31H85|RUVC_THICR RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|78363523|gb|ABB41488.1| crossover junction endodeoxyribonuclease RuvC [Thiomicrospira
           crunogena XCL-2]
          Length = 172

 Score =  191 bits (486), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 51/141 (36%), Positives = 84/141 (59%), Gaps = 1/141 (0%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M +  RI+GIDPG R+TG+GI++    +  +VSSG I    + + A RL  ++E +  +I
Sbjct: 1   MAQLKRILGIDPGSRKTGFGIIESGRFHPNYVSSGVIR-VEKLTGAQRLKTIFESVCQII 59

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             ++P   A+E+VFV K+  + +KLGQAR + + + A+  IP+ EY P  IK  ++G GH
Sbjct: 60  DQYQPHVMAIEKVFVYKNPSSAIKLGQARGVILCAAAIKEIPIMEYTPTQIKSTIVGQGH 119

Query: 121 GDKKQIHMMLKMLMPESFFKG 141
             K Q+  M++ L+  +    
Sbjct: 120 ATKDQVQFMVQNLLKLTESPQ 140


>gi|254504745|ref|ZP_05116896.1| crossover junction endodeoxyribonuclease RuvC [Labrenzia alexandrii
           DFL-11]
 gi|222440816|gb|EEE47495.1| crossover junction endodeoxyribonuclease RuvC [Labrenzia alexandrii
           DFL-11]
          Length = 171

 Score =  191 bits (486), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 94/168 (55%), Positives = 128/168 (76%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M  +IR++GIDPGLRRTGWG+++ AG+ L F++SGT+ S  ++SLA RL +L++GLT V+
Sbjct: 1   MTHAIRLLGIDPGLRRTGWGMIEAAGNRLSFIASGTVTSDNKKSLAERLVELHDGLTAVV 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
           +   P EAAVE  FVNKDA ATLKLGQAR +A+L P+LA + V+EYAPN +KK V+G GH
Sbjct: 61  RQHNPAEAAVEHTFVNKDAGATLKLGQARGVALLVPSLAGLSVAEYAPNLVKKTVVGTGH 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
            +K+QI  M+K+LMP + F   DAADALAIAVCHA H  +   ++ ++
Sbjct: 121 AEKEQIRAMVKVLMPRATFNSDDAADALAIAVCHAQHRATTAAQLKAR 168


>gi|165976580|ref|YP_001652173.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|165876681|gb|ABY69729.1| crossover junction endodeoxyribonuclease [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
          Length = 200

 Score =  191 bits (486), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 54/135 (40%), Positives = 83/135 (61%), Gaps = 1/135 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G +L ++ SG I + V   L  RL ++Y G+T++I  + P+
Sbjct: 12  ILGIDPGSRVTGYGVIRQTGRHLEYLGSGAIRTSVD-DLPTRLKRIYAGVTEIITQFHPD 70

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR  AI++     +PV EYA   +K+ V G+G  DK Q+
Sbjct: 71  MFAIEQVFMAKNADSALKLGQARGTAIVAAVNHDLPVFEYAARLVKQTVTGIGSADKIQV 130

Query: 127 HMMLKMLMPESFFKG 141
             M+  ++  S    
Sbjct: 131 QDMVTRMLQLSSKPQ 145


>gi|90418965|ref|ZP_01226876.1| crossover junction endodeoxyribonuclease ruvC [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90337045|gb|EAS50750.1| crossover junction endodeoxyribonuclease ruvC [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 172

 Score =  191 bits (486), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 109/162 (67%), Positives = 135/162 (83%)

Query: 3   KSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
           ++IRIIGIDPGLRRTGWGIV+  G++L FV+SGT++S  +  LA RL  LYEGLTDVI  
Sbjct: 5   RTIRIIGIDPGLRRTGWGIVETLGNSLRFVASGTVMSDGKMDLASRLRTLYEGLTDVIHA 64

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
            +P+EAAVEQ FVNKDAVATLKLGQAR IA++ P+LA +PV+EYAPN +KKAVIGVGHG+
Sbjct: 65  QQPDEAAVEQTFVNKDAVATLKLGQARGIAMVVPSLAGLPVAEYAPNAVKKAVIGVGHGE 124

Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYK 164
           KKQIHMM+K+LMP++ F   DAADALAIA+CH++H  S   +
Sbjct: 125 KKQIHMMVKVLMPKATFDTDDAADALAIAICHSHHRQSAQSR 166


>gi|83308728|emb|CAJ01638.1| holliday junction resolvase, endonuclease subunit, ruvC
           [Methylocapsa acidiphila]
          Length = 182

 Score =  191 bits (486), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 71/134 (52%), Positives = 100/134 (74%)

Query: 2   RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           +++IRIIGIDPGLRRTGWG+++  G  L +V+ G + S  + +L+ RL +L++GL  VI 
Sbjct: 3   QETIRIIGIDPGLRRTGWGVIESCGSRLIYVACGAVRSNEKAALSERLRELHDGLAAVIS 62

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
            + P EAAVE+ FVN+D  + LKLGQAR IA+L+PA A +PV+EYA N IKK ++G GH 
Sbjct: 63  AYAPAEAAVEETFVNRDPQSALKLGQARGIALLAPARAGLPVAEYAANLIKKTIVGAGHA 122

Query: 122 DKKQIHMMLKMLMP 135
           +K Q+ MM+K L+P
Sbjct: 123 EKAQVAMMVKFLLP 136


>gi|161378163|ref|NP_299191.2| Holliday junction resolvase [Xylella fastidiosa 9a5c]
 gi|20978755|sp|Q9PC76|RUVC_XYLFA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
          Length = 173

 Score =  191 bits (486), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 69/157 (43%), Positives = 99/157 (63%), Gaps = 1/157 (0%)

Query: 6   RIIGIDPGLRRTGWGIVDVAG-DNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           RI+GIDPG +RTG G++DV        V    +V   + S A RL QL  GL+ VI+ + 
Sbjct: 3   RILGIDPGSQRTGVGVIDVDEYGCSRHVYHAPLVLLGQSSFAGRLKQLLLGLSAVIEEYS 62

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+E A+E+VF++K+A + LKLGQAR +AI +  L  +PV EYA   IK AV+G G  DK+
Sbjct: 63  PKEVAIEKVFMSKNADSALKLGQARGVAISAVVLRDLPVHEYAARQIKLAVVGRGGADKQ 122

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSG 161
           QI  M+ +++        DAADALA+A+ HA+ + + 
Sbjct: 123 QIQHMVGVMLNLQGRLQSDAADALAVAITHAHVSATA 159


>gi|156740729|ref|YP_001430858.1| Holliday junction resolvase [Roseiflexus castenholzii DSM 13941]
 gi|156232057|gb|ABU56840.1| crossover junction endodeoxyribonuclease RuvC [Roseiflexus
           castenholzii DSM 13941]
          Length = 168

 Score =  191 bits (486), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 55/137 (40%), Positives = 77/137 (56%)

Query: 6   RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           R IGIDPG  R GWGIV+  G  +  V  G + +    S A RL QLY  L  +I  + P
Sbjct: 5   RTIGIDPGTARMGWGIVEETGGTVSLVDCGVLTTPAGVSQASRLLQLYNDLCSLIARYHP 64

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
             AA+E++F  K+    L +GQAR IA+L+ A A IPV EY P  +K+A+ G G  DK+Q
Sbjct: 65  AAAAIEELFFGKNVNTALNVGQARGIALLAFAQAGIPVHEYKPLQVKQALAGYGGADKRQ 124

Query: 126 IHMMLKMLMPESFFKGK 142
           +  M+++ +        
Sbjct: 125 VQEMVRLTLRLPTIPRP 141


>gi|325297411|ref|YP_004257328.1| Crossover junction endodeoxyribonuclease ruvC [Bacteroides
           salanitronis DSM 18170]
 gi|324316964|gb|ADY34855.1| Crossover junction endodeoxyribonuclease ruvC [Bacteroides
           salanitronis DSM 18170]
          Length = 189

 Score =  191 bits (486), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 54/165 (32%), Positives = 86/165 (52%), Gaps = 6/165 (3%)

Query: 1   MRKSIR---IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLT 57
           M + ++   I+GIDPG    G+G++ + G     ++ G I     +    +L  +Y+ + 
Sbjct: 1   MIQPVKEKIILGIDPGTNIMGYGVLKITGIKPEVMTLGVIDLRKCEDPYLKLKHIYQRVQ 60

Query: 58  DVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIG 117
            VI ++ P+E A+E  F  K+  + LKLG+A+ +AI++     IPV+EYAP  IK A+ G
Sbjct: 61  GVIASYLPDELAIEAPFYGKNVQSMLKLGRAQGVAIVAALCRDIPVTEYAPLKIKMAITG 120

Query: 118 VGHGDKKQIHMMLKMLMPE---SFFKGKDAADALAIAVCHAYHAN 159
            G   K+Q+  MLK ++           DA DAL  A CH     
Sbjct: 121 NGQASKEQVASMLKRMLHIPDSEMGPFMDATDALGAAYCHYLQMG 165


>gi|330996975|ref|ZP_08320840.1| crossover junction endodeoxyribonuclease RuvC [Paraprevotella
           xylaniphila YIT 11841]
 gi|329572049|gb|EGG53720.1| crossover junction endodeoxyribonuclease RuvC [Paraprevotella
           xylaniphila YIT 11841]
          Length = 192

 Score =  191 bits (486), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 3/156 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG    G+G++ V G+     + G I          +L +++E +T +I+++ P+
Sbjct: 11  ILGIDPGTNLMGYGVLRVTGNKAVMETMGIIDLRKYTGPYLKLGRIFERVTGIIESYLPD 70

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E  F  K+  + LKLG+A+ +AI +     IP++EYAP  IK A+ G G   K+Q+
Sbjct: 71  EMAIEAPFFGKNVQSMLKLGRAQGVAIAAAIHRDIPITEYAPLKIKMAITGNGQASKEQV 130

Query: 127 HMMLKMLMP---ESFFKGKDAADALAIAVCHAYHAN 159
             ML  ++    E      DA D LA A CH     
Sbjct: 131 AGMLTRMLHIREEDMLPYMDATDGLAAAYCHFLQMG 166


>gi|182681487|ref|YP_001829647.1| Holliday junction resolvase [Xylella fastidiosa M23]
 gi|182631597|gb|ACB92373.1| crossover junction endodeoxyribonuclease RuvC [Xylella fastidiosa
           M23]
          Length = 204

 Score =  191 bits (486), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 69/160 (43%), Positives = 100/160 (62%), Gaps = 1/160 (0%)

Query: 3   KSIRIIGIDPGLRRTGWGIVDVAG-DNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           +  RI+GIDPG +RTG G++DV        V    +V   + S A RL QL  GL+ VI+
Sbjct: 31  QMTRILGIDPGSQRTGVGVIDVDEYGCSHHVYHAPLVLLGQSSFAGRLKQLLLGLSAVIE 90

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
            + P+E A+E+VF++K+A + LKLGQAR +AI +  L  +PV EYA   IK AV+G G  
Sbjct: 91  EYSPKEVAIEKVFMSKNADSALKLGQARGVAISAVVLRDLPVHEYAARQIKLAVVGRGGA 150

Query: 122 DKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSG 161
           DK+QI  M+ +++        DAADALA+A+ HA+ + + 
Sbjct: 151 DKQQIQHMVGVMLNLQGRLQSDAADALAVAITHAHVSATA 190


>gi|145632565|ref|ZP_01788299.1| Holliday junction resolvase [Haemophilus influenzae 3655]
 gi|144986760|gb|EDJ93312.1| Holliday junction resolvase [Haemophilus influenzae 3655]
          Length = 190

 Score =  191 bits (486), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 54/135 (40%), Positives = 86/135 (63%), Gaps = 1/135 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G +L ++ SG I + V + L  RL ++Y G+T++I  ++P+
Sbjct: 4   ILGIDPGSRVTGYGVIRQTGRHLEYLGSGAIRTQV-EDLPTRLKRIYAGVTEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR  AI++     +PV EYA   +K+ V+G+G  DK Q+
Sbjct: 63  MFAIEQVFMAKNADSALKLGQARGTAIVAAVNHDLPVFEYAARLVKQTVVGIGSADKVQV 122

Query: 127 HMMLKMLMPESFFKG 141
             M+  ++  S    
Sbjct: 123 QEMITRILKLSDKPQ 137


>gi|114321640|ref|YP_743323.1| Holliday junction resolvase [Alkalilimnicola ehrlichii MLHE-1]
 gi|122310890|sp|Q0A5Q4|RUVC_ALHEH RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|114228034|gb|ABI57833.1| crossover junction endodeoxyribonuclease RuvC [Alkalilimnicola
           ehrlichii MLHE-1]
          Length = 165

 Score =  191 bits (486), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 66/153 (43%), Positives = 94/153 (61%), Gaps = 1/153 (0%)

Query: 6   RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           RI+GIDPG R TG+G+V+ +G     V+SG +          RL  LY  L++++   RP
Sbjct: 3   RILGIDPGSRITGYGVVEGSGSAPRHVASGCVRLPTG-PFPDRLRVLYRALSELLAQHRP 61

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
           E A VEQVFV+++  + LKLGQAR  AI +   A +PV+EY P  IK+A++G G   K Q
Sbjct: 62  EAAVVEQVFVSRNPDSALKLGQARGAAICACVNAGLPVAEYTPGEIKQALVGHGRAGKAQ 121

Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHA 158
           +  M++ML+       +DA DALA A+CH + A
Sbjct: 122 VGYMVRMLLRLDATPAEDAGDALAAALCHLHQA 154


>gi|297380078|gb|ADI34965.1| crossover junction endodeoxyribonuclease RuvC [Helicobacter pylori
           v225d]
          Length = 157

 Score =  190 bits (485), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 49/154 (31%), Positives = 78/154 (50%), Gaps = 2/154 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPG R+ G+ I+    + L  +++G I       L  ++  L E L  ++  + 
Sbjct: 1   MRILGIDPGSRKCGYAIISHTSNKLSLITAGFIN-ITTTRLQEQILDLIEALDCLLDRYE 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
             E A+E +F   +  + +KL Q R    L         SEY P  +KKA+ G G   K+
Sbjct: 60  VNEVAIEDIFFGYNPKSVIKLAQFRGALSLKILERIGNFSEYTPLQVKKALTGNGKAAKE 119

Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYH 157
           Q+  M+K L+   S  K  D +DA+A+A+ HA  
Sbjct: 120 QVAFMVKRLLNITSEIKPLDISDAIAVAITHAQR 153


>gi|71901780|ref|ZP_00683849.1| Crossover junction endodeoxyribonuclease RuvC [Xylella fastidiosa
           Ann-1]
 gi|71728463|gb|EAO30625.1| Crossover junction endodeoxyribonuclease RuvC [Xylella fastidiosa
           Ann-1]
          Length = 204

 Score =  190 bits (485), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 69/160 (43%), Positives = 100/160 (62%), Gaps = 1/160 (0%)

Query: 3   KSIRIIGIDPGLRRTGWGIVDVAG-DNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           +  RI+GIDPG +RTG G++DV        V    +V   + S A RL QL  GL+ VI+
Sbjct: 31  QMTRILGIDPGSQRTGVGVIDVDEYGCSHHVYHAPLVLLGQSSFAGRLKQLLLGLSAVIE 90

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
            + P+E A+E+VF++K+A + LKLGQAR +AI +  L  +PV EYA   IK AV+G G  
Sbjct: 91  EYSPKEVAIEKVFMSKNADSALKLGQARGVAISAVVLRDLPVHEYAARQIKLAVVGRGGA 150

Query: 122 DKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSG 161
           DK+QI  M+ +++        DAADALA+A+ HA+ + + 
Sbjct: 151 DKQQIQHMVGVMLNLQGRLQSDAADALAVAITHAHVSATA 190


>gi|119774976|ref|YP_927716.1| Holliday junction resolvase [Shewanella amazonensis SB2B]
 gi|166233296|sp|A1S6P0|RUVC_SHEAM RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|119767476|gb|ABM00047.1| crossover junction endodeoxyribonuclease RuvC [Shewanella
           amazonensis SB2B]
          Length = 173

 Score =  190 bits (485), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 61/154 (39%), Positives = 99/154 (64%), Gaps = 1/154 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+G+DPG R TG+G++   G +  ++ SG I +     L  RL Q+++GL ++I+ ++P 
Sbjct: 4   ILGVDPGSRITGYGVIQCQGRHQLYLGSGCIRTSSD-ELPDRLKQIFDGLQEIIRQYQPS 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           + A+E+VF+ K+A + LKLGQAR  AI++  +A +PV+EY+   IK AV+G G   K Q+
Sbjct: 63  QFAIERVFMAKNADSALKLGQARGAAIVAATVAGLPVAEYSATQIKNAVVGTGRAQKAQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
             M++ ++        DAADALA+A+CH +   S
Sbjct: 123 QHMVQQMLKLPAAPQADAADALAVAMCHYHTHQS 156


>gi|300112851|ref|YP_003759426.1| crossover junction endodeoxyribonuclease RuvC [Nitrosococcus
           watsonii C-113]
 gi|299538788|gb|ADJ27105.1| crossover junction endodeoxyribonuclease RuvC [Nitrosococcus
           watsonii C-113]
          Length = 174

 Score =  190 bits (485), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 52/135 (38%), Positives = 88/135 (65%), Gaps = 1/135 (0%)

Query: 6   RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           RI+GIDPG R TG+G+++       ++++G I       LA RL Q+++G+T++I+++ P
Sbjct: 3   RILGIDPGSRITGYGLIETNNKKTIYIAAGCIR-AGGGGLAERLGQIFQGITEIIQDYHP 61

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
           +E AVEQVF++++  + LKLGQAR  AI +   A +P+ EY P+ +K+AV+G G   K Q
Sbjct: 62  DEVAVEQVFMHQNPSSALKLGQARGAAICAAVNAVLPIFEYTPSQVKQAVVGRGDAAKSQ 121

Query: 126 IHMMLKMLMPESFFK 140
           +  M+++L+      
Sbjct: 122 VQYMVRLLLKLPAEP 136


>gi|71275804|ref|ZP_00652088.1| Crossover junction endodeoxyribonuclease RuvC [Xylella fastidiosa
           Dixon]
 gi|71900403|ref|ZP_00682536.1| Crossover junction endodeoxyribonuclease RuvC [Xylella fastidiosa
           Ann-1]
 gi|170730216|ref|YP_001775649.1| Holliday junction resolvase [Xylella fastidiosa M12]
 gi|71163382|gb|EAO13100.1| Crossover junction endodeoxyribonuclease RuvC [Xylella fastidiosa
           Dixon]
 gi|71729835|gb|EAO31933.1| Crossover junction endodeoxyribonuclease RuvC [Xylella fastidiosa
           Ann-1]
 gi|167965009|gb|ACA12019.1| holliday junction resolvase, endodeoxyribonuclease [Xylella
           fastidiosa M12]
          Length = 181

 Score =  190 bits (485), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 69/162 (42%), Positives = 101/162 (62%), Gaps = 1/162 (0%)

Query: 3   KSIRIIGIDPGLRRTGWGIVDVAG-DNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           +  RI+GIDPG +RTG G++DV        V    +V   + S A RL QL  GL+ VI+
Sbjct: 8   QMTRILGIDPGSQRTGVGVIDVDEYGCSHHVYHAPLVLLGQSSFAGRLKQLLLGLSAVIE 67

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
            + P+E A+E+VF++K+A + LKLGQAR +AI +  L  +PV EYA   IK AV+G G  
Sbjct: 68  EYSPKEVAIEKVFMSKNADSALKLGQARGVAISAVVLRDLPVHEYAARQIKLAVVGRGGA 127

Query: 122 DKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYY 163
           DK+QI  M+ +++        DAADALA+A+ HA+ + +  +
Sbjct: 128 DKQQIQHMVGVMLNLQGRLQSDAADALAVAITHAHVSATAQH 169


>gi|307257207|ref|ZP_07538979.1| Crossover junction endodeoxyribonuclease ruvC [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306864369|gb|EFM96280.1| Crossover junction endodeoxyribonuclease ruvC [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
          Length = 192

 Score =  190 bits (485), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 54/135 (40%), Positives = 83/135 (61%), Gaps = 1/135 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G +L ++ SG I + V   L  RL ++Y G+T++I  + P+
Sbjct: 4   ILGIDPGSRVTGYGVIRQTGRHLEYLGSGAIRTSVD-DLPTRLKRIYAGVTEIITQFHPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR  AI++     +PV EYA   +K+ V G+G  DK Q+
Sbjct: 63  MFAIEQVFMAKNADSALKLGQARGTAIVAAVNHDLPVFEYAARLVKQTVTGIGSADKIQV 122

Query: 127 HMMLKMLMPESFFKG 141
             M+  ++  S    
Sbjct: 123 QDMVTRMLQLSSKPQ 137


>gi|240949851|ref|ZP_04754177.1| Holliday junction resolvase [Actinobacillus minor NM305]
 gi|257464831|ref|ZP_05629202.1| Holliday junction resolvase [Actinobacillus minor 202]
 gi|240295705|gb|EER46407.1| Holliday junction resolvase [Actinobacillus minor NM305]
 gi|257450491|gb|EEV24534.1| Holliday junction resolvase [Actinobacillus minor 202]
          Length = 192

 Score =  190 bits (485), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 54/135 (40%), Positives = 85/135 (62%), Gaps = 1/135 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G +L ++ SG I + V   L  RL ++Y G+T++I  ++P+
Sbjct: 4   ILGIDPGSRITGYGVIRQTGKHLEYLGSGAIRTSVD-DLPTRLKRIYAGVTEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR  AI++     +PV EYA   +K+ V+G+G  DK Q+
Sbjct: 63  MFAIEQVFMAKNADSALKLGQARGTAIVAAVNHDLPVFEYAARLVKQTVVGIGSADKVQV 122

Query: 127 HMMLKMLMPESFFKG 141
             M+  ++  S    
Sbjct: 123 QDMVTRILQLSAKPQ 137


>gi|104161982|emb|CAJ75691.1| crossover junction endodeoxyribonuclease [uncultured Thermotogales
           bacterium]
          Length = 168

 Score =  190 bits (485), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 38/142 (26%), Positives = 77/142 (54%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M   +R++GIDPG    G+G++++    +  VS G I +   + +  RL ++++ L  ++
Sbjct: 1   MPACVRVLGIDPGFGTVGYGVLEMRASKIELVSYGAIRTEPDEPIPDRLLKIHDQLERLL 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
           +   P+E+AVE++F  ++    +++ +AR + +L+     +P+ EY P+ +K AV G G 
Sbjct: 61  QECSPDESAVEELFFFRNVTTAIQVSEARGVILLAMRRHEVPIFEYTPHQVKLAVTGYGR 120

Query: 121 GDKKQIHMMLKMLMPESFFKGK 142
            +K Q+   LK  +        
Sbjct: 121 AEKGQVQRTLKAFLRMKETPRP 142


>gi|261837897|gb|ACX97663.1| Holliday junction endodeoxyribonuclease [Helicobacter pylori 51]
          Length = 157

 Score =  190 bits (485), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 50/154 (32%), Positives = 79/154 (51%), Gaps = 2/154 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPG R+ G+ I+  A + L  +++G I       L  ++  L E L  ++  + 
Sbjct: 1   MRILGIDPGSRKCGYAIISHASNKLSLITAGFIN-ITTTRLQEQILDLIEALDCLLDRYE 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
             E A+E +F   +  + +KL Q R    L         SEY P  +KKA+ G G   K+
Sbjct: 60  VNEVAIEDIFFGYNPKSVIKLAQFRGALSLKILERIGNFSEYTPLQVKKALTGNGKAAKE 119

Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYH 157
           Q+  M+K L+   S  K  D +DA+A+A+ HA  
Sbjct: 120 QVAFMVKRLLNITSEIKPLDISDAIAVAITHAQR 153


>gi|315634724|ref|ZP_07890008.1| crossover junction endodeoxyribonuclease RuvC [Aggregatibacter
           segnis ATCC 33393]
 gi|315476672|gb|EFU67420.1| crossover junction endodeoxyribonuclease RuvC [Aggregatibacter
           segnis ATCC 33393]
          Length = 190

 Score =  190 bits (485), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 55/135 (40%), Positives = 84/135 (62%), Gaps = 1/135 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I + V   L  RL ++Y G+T++I  ++P+
Sbjct: 4   ILGIDPGSRVTGYGVIRQTGRQLEYLGSGAIRTQVD-DLPTRLKRIYAGVTEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR  AI++     +PV EYA   IK+ V+G+G  DK Q+
Sbjct: 63  MFAIEQVFMAKNADSALKLGQARGTAIVAAVNHDLPVFEYAARLIKQTVVGIGSADKIQV 122

Query: 127 HMMLKMLMPESFFKG 141
             M+  ++  S    
Sbjct: 123 QDMVTRILKLSDKPQ 137


>gi|145634687|ref|ZP_01790396.1| Holliday junction resolvase [Haemophilus influenzae PittAA]
 gi|145640258|ref|ZP_01795842.1| Holliday junction resolvase [Haemophilus influenzae R3021]
 gi|260582588|ref|ZP_05850378.1| crossover junction endodeoxyribonuclease RuvC [Haemophilus
           influenzae NT127]
 gi|319896646|ref|YP_004134839.1| crossover junction endodeoxyribonuclease ruvc [Haemophilus
           influenzae F3031]
 gi|145268232|gb|EDK08227.1| Holliday junction resolvase [Haemophilus influenzae PittAA]
 gi|145274844|gb|EDK14706.1| Holliday junction resolvase [Haemophilus influenzae 22.4-21]
 gi|260094399|gb|EEW78297.1| crossover junction endodeoxyribonuclease RuvC [Haemophilus
           influenzae NT127]
 gi|317432148|emb|CBY80499.1| crossover junction endodeoxyribonuclease RuvC [Haemophilus
           influenzae F3031]
          Length = 190

 Score =  190 bits (485), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 54/135 (40%), Positives = 85/135 (62%), Gaps = 1/135 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G +L ++ SG I + V + L  RL ++Y G+T++I  ++P 
Sbjct: 4   ILGIDPGSRVTGYGVIRQTGRHLEYLGSGAIRTQV-EDLPTRLKRIYAGVTEIITQFQPN 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR  AI++     +PV EYA   +K+ V+G+G  DK Q+
Sbjct: 63  MFAIEQVFMAKNADSALKLGQARGTAIVAAVNHDLPVFEYAARLVKQTVVGIGSADKVQV 122

Query: 127 HMMLKMLMPESFFKG 141
             M+  ++  S    
Sbjct: 123 QEMVTRILKLSDKPQ 137


>gi|15602843|ref|NP_245915.1| Holliday junction resolvase [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|13431842|sp|P57894|RUVC_PASMU RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|12721304|gb|AAK03062.1| RuvC [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 190

 Score =  190 bits (485), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 53/135 (39%), Positives = 85/135 (62%), Gaps = 1/135 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++  AG +L ++ SG I + V   L  RL ++Y G+ ++I  ++P+
Sbjct: 4   ILGIDPGSRVTGYGVIRQAGRHLEYLGSGVIRTSV-TDLPTRLKRIYMGVNEIILQYQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+E+VF+ K+A + LKLGQAR  AI++     +PV EYA   +K+ V+G+G  DK Q+
Sbjct: 63  MFAIEEVFLAKNANSALKLGQARGAAIVAAVNHDLPVFEYAARLVKQTVVGIGSADKIQV 122

Query: 127 HMMLKMLMPESFFKG 141
             M+  ++  S    
Sbjct: 123 QDMVTRILTLSEKPQ 137


>gi|317484653|ref|ZP_07943556.1| crossover junction endodeoxyribonuclease RuvC [Bilophila
           wadsworthia 3_1_6]
 gi|316924127|gb|EFV45310.1| crossover junction endodeoxyribonuclease RuvC [Bilophila
           wadsworthia 3_1_6]
          Length = 169

 Score =  190 bits (485), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 65/169 (38%), Positives = 95/169 (56%), Gaps = 1/169 (0%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M +SI IIGIDPG R TGWG+V      L  V  G I   +    A RL  +++ +  ++
Sbjct: 1   MSQSITIIGIDPGSRNTGWGVVREVSGVLQLVDCGVIRPPLDGEFASRLGVIFKEMHRLL 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
              +P+EA+VEQVF  K+A   LKLGQAR  AI + A   +PV +Y P  IKK+++GVG 
Sbjct: 61  GRLKPDEASVEQVFTAKNAATALKLGQARGAAIAACAAYDLPVRDYEPTVIKKSLVGVGR 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHA-YHANSGYYKIASQ 168
            DK+Q+  M+  ++        D  DALA A+CH  +       +++ +
Sbjct: 121 ADKEQVSFMVGRVLGVKPDWAVDTGDALAAAICHLTHRRFERLVRLSGR 169


>gi|308062201|gb|ADO04089.1| Holliday junction resolvase [Helicobacter pylori Cuz20]
 gi|308063329|gb|ADO05216.1| Holliday junction resolvase [Helicobacter pylori Sat464]
          Length = 157

 Score =  190 bits (485), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 50/154 (32%), Positives = 78/154 (50%), Gaps = 2/154 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPG R+ G+ IV    + L  +++G I       L  ++  L E L  ++  + 
Sbjct: 1   MRILGIDPGSRKCGYAIVSHTSNKLSLITAGFIN-ITTTRLQEQILDLIEALDCLLDRYE 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
             E A+E +F   +  + +KL Q R    L         SEY P  +KKA+ G G   K+
Sbjct: 60  VNEVAIEDIFFGYNPKSVIKLAQFRGALSLKILERIGNFSEYTPLQVKKALTGNGKAAKE 119

Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYH 157
           Q+  M+K L+   S  K  D +DA+A+A+ HA  
Sbjct: 120 QVAFMVKRLLNITSEIKPLDISDAIAVAITHAQR 153


>gi|148658443|ref|YP_001278648.1| Holliday junction resolvase [Roseiflexus sp. RS-1]
 gi|187611449|sp|A5V1E5|RUVC_ROSS1 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|148570553|gb|ABQ92698.1| crossover junction endodeoxyribonuclease RuvC [Roseiflexus sp.
           RS-1]
          Length = 168

 Score =  190 bits (485), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 51/139 (36%), Positives = 76/139 (54%)

Query: 4   SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           + R IGIDPG  R GWG+V+     L  V  G + +    S A RL  LY  L  +I+ +
Sbjct: 3   ATRTIGIDPGTARMGWGVVEETDGVLRLVDCGVLTTSAELSQAERLLLLYNELRHLIEQY 62

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P  AA+E++F  K+    L +GQAR + +L+ A A IPV EY P  +K+A+ G G  DK
Sbjct: 63  HPAAAAIEELFFGKNVNTALTVGQARGVVLLTLAQAGIPVYEYKPLQVKQALAGYGGADK 122

Query: 124 KQIHMMLKMLMPESFFKGK 142
           +Q+  M+++ +        
Sbjct: 123 RQMQEMVRLTLRLPAIPRP 141


>gi|86150551|ref|ZP_01068775.1| crossover junction endodeoxyribonuclease RuvC [Campylobacter jejuni
           subsp. jejuni CF93-6]
 gi|86152383|ref|ZP_01070593.1| crossover junction endodeoxyribonuclease RuvC [Campylobacter jejuni
           subsp. jejuni 260.94]
 gi|86154008|ref|ZP_01072210.1| crossover junction endodeoxyribonuclease RuvC [Campylobacter jejuni
           subsp. jejuni HB93-13]
 gi|88597675|ref|ZP_01100908.1| crossover junction endodeoxyribonuclease RuvC [Campylobacter jejuni
           subsp. jejuni 84-25]
 gi|315125110|ref|YP_004067114.1| crossover junction endodeoxyribonuclease [Campylobacter jejuni
           subsp. jejuni ICDCCJ07001]
 gi|85839003|gb|EAQ56268.1| crossover junction endodeoxyribonuclease RuvC [Campylobacter jejuni
           subsp. jejuni CF93-6]
 gi|85840680|gb|EAQ57932.1| crossover junction endodeoxyribonuclease RuvC [Campylobacter jejuni
           subsp. jejuni 260.94]
 gi|85842546|gb|EAQ59759.1| crossover junction endodeoxyribonuclease RuvC [Campylobacter jejuni
           subsp. jejuni HB93-13]
 gi|88189979|gb|EAQ93955.1| crossover junction endodeoxyribonuclease RuvC [Campylobacter jejuni
           subsp. jejuni 84-25]
 gi|307748586|gb|ADN91856.1| Holliday junction resolvase [Campylobacter jejuni subsp. jejuni M1]
 gi|315018832|gb|ADT66925.1| crossover junction endodeoxyribonuclease [Campylobacter jejuni
           subsp. jejuni ICDCCJ07001]
 gi|315930327|gb|EFV09415.1| crossover junction endodeoxyribonuclease RuvC [Campylobacter jejuni
           subsp. jejuni 305]
          Length = 184

 Score =  190 bits (484), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 51/157 (32%), Positives = 77/157 (49%), Gaps = 4/157 (2%)

Query: 2   RKSI--RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDV 59
            K +  +I+GIDPG R  G+ I++        + +G I       L +++ +L EGL  +
Sbjct: 22  SKGMNLKILGIDPGSRNCGYAIIEADKGKNILIEAGLIKIKPST-LQYQITELCEGLDLI 80

Query: 60  IKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVG 119
            KN   +E A+E +F   +    LKL Q R    L         +EY P  +KKAV G  
Sbjct: 81  FKNHSFDEVAIEDIFFAYNPKTVLKLAQFRGALSLKILQIHGDFAEYTPLQVKKAVTGKA 140

Query: 120 HGDKKQIHMMLKMLMPESF-FKGKDAADALAIAVCHA 155
              K+Q+  M+K L+  S   K  D  DA+A+A+ HA
Sbjct: 141 KATKEQVAFMVKRLLGLSKDIKPLDITDAIAVALTHA 177


>gi|118474695|ref|YP_892929.1| Holliday junction resolvase [Campylobacter fetus subsp. fetus
           82-40]
 gi|166231593|sp|A0RRU6|RUVC_CAMFF RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|118413921|gb|ABK82341.1| crossover junction endodeoxyribonuclease RuvC [Campylobacter fetus
           subsp. fetus 82-40]
          Length = 157

 Score =  190 bits (484), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 50/154 (32%), Positives = 81/154 (52%), Gaps = 2/154 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++I+GIDPG R  G+ +++  G+    + +G I    + SL +++ QL EGL  + K+ +
Sbjct: 1   MKILGIDPGTRNCGYAVIEKTGNKKTLIEAGLIK-IKQDSLQYQITQLCEGLDIIFKSHK 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
            +  A+E +F   +    LKL Q R    L         SEY P  IKKAV G     K+
Sbjct: 60  IDAVAIEDIFYAHNPKTVLKLAQFRGALSLKILQIHGEFSEYTPLQIKKAVTGKAKAAKE 119

Query: 125 QIHMMLKMLMP-ESFFKGKDAADALAIAVCHAYH 157
           Q+  M+K ++      K  D  DA+AIA+ H+++
Sbjct: 120 QVAFMVKKMLGINQEIKPLDVTDAIAIALTHSFN 153


>gi|301155727|emb|CBW15195.1| component of RuvABC resolvasome, endonuclease [Haemophilus
           parainfluenzae T3T1]
          Length = 190

 Score =  190 bits (484), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 54/135 (40%), Positives = 86/135 (63%), Gaps = 1/135 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G +L ++ SG I + V + L  RL ++Y G+T++I  ++P+
Sbjct: 4   ILGIDPGSRVTGYGVIRQNGRHLEYLGSGAIRTQV-EDLPTRLKRIYAGVTEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR  AI++     +PV EYA   +K+ V+G+G  DK Q+
Sbjct: 63  MFAIEQVFMAKNADSALKLGQARGTAIVAAVNHDLPVFEYAARLVKQTVVGIGSADKVQV 122

Query: 127 HMMLKMLMPESFFKG 141
             M+  ++  S    
Sbjct: 123 QDMVTRILKLSDKPQ 137


>gi|289450708|ref|YP_003475228.1| crossover junction endodeoxyribonuclease RuvC [Clostridiales
           genomosp. BVAB3 str. UPII9-5]
 gi|289185255|gb|ADC91680.1| crossover junction endodeoxyribonuclease RuvC [Clostridiales
           genomosp. BVAB3 str. UPII9-5]
          Length = 167

 Score =  190 bits (484), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 43/136 (31%), Positives = 77/136 (56%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + I+G+DPG   TG+GI++   + L  +  G + +  R  +  RL +++ GL  +++ + 
Sbjct: 1   MIIMGVDPGYAITGYGILETKNNRLNPLDFGVLTTPARMPIERRLYKIHTGLIAIMREYN 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P   AVE++F  ++    +   +AR IA+L+ A  +IPV EY P  +K AV G G  +K+
Sbjct: 61  PAVLAVEELFFARNTTTAIGTAEARGIALLAAAQYKIPVFEYTPLQVKLAVTGYGKSEKR 120

Query: 125 QIHMMLKMLMPESFFK 140
           Q+  M+K+L+      
Sbjct: 121 QVQSMVKLLLHLDEMP 136


>gi|145631438|ref|ZP_01787208.1| Holliday junction resolvase [Haemophilus influenzae R3021]
 gi|144982975|gb|EDJ90484.1| Holliday junction resolvase [Haemophilus influenzae R3021]
          Length = 190

 Score =  190 bits (484), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 53/135 (39%), Positives = 85/135 (62%), Gaps = 1/135 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G +L ++ SG I + V + L  RL ++Y G+ ++I  ++P+
Sbjct: 4   ILGIDPGSRVTGYGVIRQTGRHLEYLGSGAIRTQV-EDLPTRLKRIYAGVAEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR  AI++     +PV EYA   +K+ V+G+G  DK Q+
Sbjct: 63  MFAIEQVFMAKNADSALKLGQARGTAIVAAVNHNLPVFEYAARLVKQTVVGIGSADKVQV 122

Query: 127 HMMLKMLMPESFFKG 141
             M+  ++  S    
Sbjct: 123 QEMITRILKLSDKPQ 137


>gi|32033874|ref|ZP_00134145.1| COG0817: Holliday junction resolvasome, endonuclease subunit
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|126208623|ref|YP_001053848.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae L20]
 gi|190150481|ref|YP_001969006.1| crossover junction endodeoxyribonuclease RuvC [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|307261635|ref|ZP_07543303.1| Crossover junction endodeoxyribonuclease ruvC [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|307263825|ref|ZP_07545430.1| Crossover junction endodeoxyribonuclease ruvC [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|166231574|sp|A3N1F7|RUVC_ACTP2 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|238692344|sp|B3GY41|RUVC_ACTP7 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|126097415|gb|ABN74243.1| crossover junction endodeoxyribonuclease RuvC [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
 gi|189915612|gb|ACE61864.1| crossover junction endodeoxyribonuclease RuvC [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|306868758|gb|EFN00567.1| Crossover junction endodeoxyribonuclease ruvC [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|306870814|gb|EFN02553.1| Crossover junction endodeoxyribonuclease ruvC [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 192

 Score =  190 bits (484), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 54/135 (40%), Positives = 83/135 (61%), Gaps = 1/135 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G +L ++ SG I + V   L  RL ++Y G+T++I  + P+
Sbjct: 4   ILGIDPGSRVTGYGVIRQTGRHLEYLGSGAIRTSVD-DLPTRLKRIYAGVTEIITQFHPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR  AI++     +PV EYA   +K+ V G+G  DK Q+
Sbjct: 63  MFAIEQVFMAKNADSALKLGQARGTAIVAAVNHDLPVFEYAARLVKQTVTGIGSADKIQV 122

Query: 127 HMMLKMLMPESFFKG 141
             M+  ++  S    
Sbjct: 123 QDMVTRMLQLSSKPQ 137


>gi|119952830|ref|YP_945039.1| crossover junction endodeoxyribonuclease RuvC [Borrelia turicatae
           91E135]
 gi|254767460|sp|A1QYH7|RUVC_BORT9 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|119861601|gb|AAX17369.1| crossover junction endodeoxyribonuclease RuvC [Borrelia turicatae
           91E135]
          Length = 161

 Score =  190 bits (484), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 51/153 (33%), Positives = 90/153 (58%), Gaps = 3/153 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGL   GWGI+D  G    +V  GT+++    SL  RL  + + +  +I N++
Sbjct: 3   MRILGIDPGLANVGWGILDRKGSKYMYVQDGTVITHPFMSLKDRLKLISDEIILIIDNFK 62

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ A++E ++  K+    + + +AR   IL+ AL  +   EY P  +K ++ G G  +K 
Sbjct: 63  PDVASIENIYFAKNKKTAISVSEARGAIILTFALKNLDFYEYTPIQVKNSISGFGRIEKV 122

Query: 125 QIHMMLKMLM---PESFFKGKDAADALAIAVCH 154
           Q+  ++++L+   P+  F    ++DALA+A+CH
Sbjct: 123 QVKYVIRILLGMKPDFIFTSDHSSDALALAICH 155


>gi|68248921|ref|YP_248033.1| Holliday junction resolvase [Haemophilus influenzae 86-028NP]
 gi|81336668|sp|Q4QNM4|RUVC_HAEI8 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|68057120|gb|AAX87373.1| crossover junction endodeoxyribonuclease RuvC [Haemophilus
           influenzae 86-028NP]
          Length = 190

 Score =  190 bits (484), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 54/135 (40%), Positives = 85/135 (62%), Gaps = 1/135 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G +L ++ SG I + V + L  RL ++Y G+T++I  ++P 
Sbjct: 4   ILGIDPGSRVTGYGVIRQTGRHLEYLGSGAIRTQV-EDLPTRLKRIYAGVTEIITQFQPN 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR  AI++     +PV EYA   +K+ V+G+G  DK Q+
Sbjct: 63  MFAIEQVFMAKNADSALKLGQARGTAIVAAVNNDLPVFEYAARLVKQTVVGIGSADKVQV 122

Query: 127 HMMLKMLMPESFFKG 141
             M+  ++  S    
Sbjct: 123 QEMVTRILKLSDKPQ 137


>gi|317180639|dbj|BAJ58425.1| Holliday junction resolvase [Helicobacter pylori F32]
 gi|317182185|dbj|BAJ59969.1| Holliday junction resolvase [Helicobacter pylori F57]
          Length = 157

 Score =  190 bits (484), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 49/154 (31%), Positives = 78/154 (50%), Gaps = 2/154 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPG R+ G+ I+    + L  +++G I       L  ++  L E L  ++  + 
Sbjct: 1   MRILGIDPGSRKCGYAIISHTSNKLSLITAGFIN-ITTTRLQEQILDLIEALDCLLDRYE 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
             E A+E +F   +  + +KL Q R    L         SEY P  +KKA+ G G   K+
Sbjct: 60  VHEVAIEDIFFGYNPKSVIKLAQFRGALSLKILERIGNFSEYTPLQVKKALTGNGKAAKE 119

Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYH 157
           Q+  M+K L+   S  K  D +DA+A+A+ HA  
Sbjct: 120 QVAFMVKRLLNITSEIKPLDISDAIAVAITHAQR 153


>gi|94986712|ref|YP_594645.1| Holliday junction resolvase [Lawsonia intracellularis PHE/MN1-00]
 gi|123262186|sp|Q1MRQ2|RUVC_LAWIP RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|94730961|emb|CAJ54324.1| Holliday junction resolvasome, endonuclease subunit [Lawsonia
           intracellularis PHE/MN1-00]
          Length = 168

 Score =  190 bits (484), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 57/149 (38%), Positives = 84/149 (56%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           +IGIDPG R TGWGIV      L  V  G I      S A RL  +++ ++ +I  ++P 
Sbjct: 4   VIGIDPGSRNTGWGIVHEVSGVLHLVCCGVIQPSCNGSFAERLAHIFQEISSIIMKYKPV 63

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           EA+VEQVF  ++ +  LKLGQAR  A+++ A   + + +Y   TIKK ++G G   K+Q+
Sbjct: 64  EASVEQVFTAQNPLTALKLGQARGAAVVACANQGLLIKDYEATTIKKTLVGHGRATKEQV 123

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHA 155
             M+   +        D +DALA A+CH 
Sbjct: 124 SFMVGRSLGVKPDWPIDTSDALATAICHL 152


>gi|194333340|ref|YP_002015200.1| crossover junction endodeoxyribonuclease RuvC [Prosthecochloris
           aestuarii DSM 271]
 gi|238693318|sp|B4S5F6|RUVC_PROA2 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|194311158|gb|ACF45553.1| crossover junction endodeoxyribonuclease RuvC [Prosthecochloris
           aestuarii DSM 271]
          Length = 187

 Score =  190 bits (484), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 48/150 (32%), Positives = 78/150 (52%), Gaps = 1/150 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + ++G+DPG   TG+G+V   G     V+ G I     QS+A R+  +Y+ L  +I  + 
Sbjct: 1   MIVLGVDPGSVHTGYGVVLCNGQKFSLVACGLIRLSSNQSIADRIKIIYDELGAIIAEYN 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  A+E  +VN++  + LKLGQ R   +       + + EYAP  +K  + G G   K+
Sbjct: 61  PQRLALETAYVNRNPQSALKLGQVRGAIVALTMNKGLELHEYAPREVKYVLTGKGSAGKE 120

Query: 125 QIHMMLKMLMP-ESFFKGKDAADALAIAVC 153
           Q+  M +  +  +   K  D  DAL IA+C
Sbjct: 121 QVSYMARHFLNIQEPIKPYDVTDALGIALC 150


>gi|15611878|ref|NP_223529.1| Holliday junction resolvase [Helicobacter pylori J99]
 gi|6685959|sp|Q9ZKX3|RUVC_HELPJ RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|4155374|gb|AAD06385.1| CROSSOVER JUNCTION ENDODEOXYRIBONUCLEASE [Helicobacter pylori J99]
          Length = 157

 Score =  190 bits (484), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 50/154 (32%), Positives = 79/154 (51%), Gaps = 2/154 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPG R+ G+ I+  A + L  +++G I       L  ++  L E L  ++  + 
Sbjct: 1   MRILGIDPGSRKCGYAIISHASNKLSLITAGFIN-ITTTRLQEQILDLIEALDCLLDRYE 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
             E A+E +F   +  + +KL Q R    L         SEY P  +KKA+ G G   K+
Sbjct: 60  VNEVAIEDIFFGYNPKSVIKLAQFRGALSLKILERIGNFSEYTPLQVKKALTGNGKAAKE 119

Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYH 157
           Q+  M+K L+   S  K  D +DA+A+A+ HA  
Sbjct: 120 QVAFMVKRLLNITSEIKPLDISDAIAVAITHAQR 153


>gi|325579044|ref|ZP_08149000.1| crossover junction endodeoxyribonuclease RuvC [Haemophilus
           parainfluenzae ATCC 33392]
 gi|325159279|gb|EGC71413.1| crossover junction endodeoxyribonuclease RuvC [Haemophilus
           parainfluenzae ATCC 33392]
          Length = 190

 Score =  190 bits (484), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 54/135 (40%), Positives = 86/135 (63%), Gaps = 1/135 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G +L ++ SG I + V + L  RL ++Y G+T++I  ++P+
Sbjct: 4   ILGIDPGSRVTGYGVIRQNGRHLEYLGSGAIRTQV-EDLPTRLKRIYAGVTEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR  AI++     +PV EYA   +K+ V+G+G  DK Q+
Sbjct: 63  MFAIEQVFMAKNADSALKLGQARGTAIVAAVNHDLPVFEYAARLVKQTVVGIGSADKVQV 122

Query: 127 HMMLKMLMPESFFKG 141
             M+  ++  S    
Sbjct: 123 QDMVTRILKLSDKPQ 137


>gi|213855274|ref|ZP_03383514.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
          Length = 127

 Score =  190 bits (484), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 52/125 (41%), Positives = 82/125 (65%), Gaps = 1/125 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I + V   L  RL  +Y G+T++I  ++P+
Sbjct: 4   ILGIDPGSRITGYGVIRQVGRQLTYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR +AI++     +PV EYA   +K+ V+G+G  +K Q+
Sbjct: 63  YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 122

Query: 127 HMMLK 131
             M++
Sbjct: 123 QHMVR 127


>gi|269120217|ref|YP_003308394.1| crossover junction endodeoxyribonuclease RuvC [Sebaldella
           termitidis ATCC 33386]
 gi|268614095|gb|ACZ08463.1| crossover junction endodeoxyribonuclease RuvC [Sebaldella
           termitidis ATCC 33386]
          Length = 192

 Score =  190 bits (483), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 37/136 (27%), Positives = 72/136 (52%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + ++G+DPG    G+ +++        +  G + +   + +  RL ++Y+GL  +IK W+
Sbjct: 1   MIVLGVDPGTAIVGYSVIEYVKSKYRILDYGCVYTDKDEDMPVRLEKIYDGLDGIIKIWK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P++ A+E++F  K+    +K+GQAR +  L      + +  Y P  +K  + G G  DKK
Sbjct: 61  PQDMAIEELFFFKNQKTVIKVGQARGVITLCGQKNCLDLYSYTPLQVKMGIAGYGRADKK 120

Query: 125 QIHMMLKMLMPESFFK 140
           QI  M+K+++      
Sbjct: 121 QIQEMVKVILGMDEIP 136


>gi|319775818|ref|YP_004138306.1| crossover junction endodeoxyribonuclease RuvC [Haemophilus
           influenzae F3047]
 gi|329123662|ref|ZP_08252222.1| crossover junction endodeoxyribonuclease RuvC [Haemophilus
           aegyptius ATCC 11116]
 gi|317450409|emb|CBY86625.1| crossover junction endodeoxyribonuclease RuvC [Haemophilus
           influenzae F3047]
 gi|327469861|gb|EGF15326.1| crossover junction endodeoxyribonuclease RuvC [Haemophilus
           aegyptius ATCC 11116]
          Length = 190

 Score =  190 bits (483), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 54/135 (40%), Positives = 85/135 (62%), Gaps = 1/135 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G +L ++ SG I + V + L  RL ++Y G+T++I  ++P 
Sbjct: 4   ILGIDPGSRVTGYGVIRQTGRHLEYLGSGAIRTQV-EDLPTRLKRIYAGVTEIITQFQPN 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR  AI++     +PV EYA   +K+ V+G+G  DK Q+
Sbjct: 63  MFAIEQVFMAKNADSALKLGQARGTAIVAAVNHDLPVFEYAARLVKQTVVGIGSADKVQV 122

Query: 127 HMMLKMLMPESFFKG 141
             M+  ++  S    
Sbjct: 123 QEMVTRILKLSDKPQ 137


>gi|217033157|ref|ZP_03438615.1| hypothetical protein HPB128_183g4 [Helicobacter pylori B128]
 gi|298736584|ref|YP_003729110.1| crossover junction endodeoxyribonuclease RuvC [Helicobacter pylori
           B8]
 gi|216945117|gb|EEC23817.1| hypothetical protein HPB128_183g4 [Helicobacter pylori B128]
 gi|298355774|emb|CBI66646.1| crossover junction endodeoxyribonuclease RuvC [Helicobacter pylori
           B8]
          Length = 157

 Score =  190 bits (483), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 50/154 (32%), Positives = 79/154 (51%), Gaps = 2/154 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPG R+ G+ I+  A + L  +++G I       L  ++  L E L  ++  + 
Sbjct: 1   MRILGIDPGSRKCGYAIISHASNKLSLITAGFIN-ITTTRLQEQILDLIEALDCLLDRYE 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
             E A+E +F   +  + +KL Q R    L         SEY P  +KKA+ G G   K+
Sbjct: 60  VNEVAIEDIFFGYNPKSVIKLAQFRGALSLKILERIGNFSEYTPLQVKKALTGNGKAAKE 119

Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYH 157
           Q+  M+K L+   S  K  D +DA+A+A+ HA  
Sbjct: 120 QVAFMVKRLLNITSEIKPLDISDAIAVAITHAQR 153


>gi|298242493|ref|ZP_06966300.1| crossover junction endodeoxyribonuclease RuvC [Ktedonobacter
           racemifer DSM 44963]
 gi|297555547|gb|EFH89411.1| crossover junction endodeoxyribonuclease RuvC [Ktedonobacter
           racemifer DSM 44963]
          Length = 182

 Score =  190 bits (483), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 47/136 (34%), Positives = 81/136 (59%), Gaps = 1/136 (0%)

Query: 6   RI-IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           RI +GIDPG    G+ +V   G NL  ++   I +  +  LA RL  +Y  L+++I  ++
Sbjct: 14  RIALGIDPGTAIVGYAVVMAQGSNLSLLACDVITTPAKTPLAQRLQTIYAELSNIIATFK 73

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+EAA+E++F  K+A   + +G AR +A+L+ A   + V+EY P  +K+AV G G  +K 
Sbjct: 74  PQEAAIEELFFAKNARTAMTVGHARGVAMLALANGGLTVAEYKPKQVKQAVTGYGDANKD 133

Query: 125 QIHMMLKMLMPESFFK 140
           Q+  M+++L+  +   
Sbjct: 134 QVGEMVRILLKLTAVP 149


>gi|188527278|ref|YP_001909965.1| Holliday junction resolvase [Helicobacter pylori Shi470]
 gi|238691910|sp|B2USV3|RUVC_HELPS RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|188143518|gb|ACD47935.1| Holliday junction resolvase [Helicobacter pylori Shi470]
          Length = 157

 Score =  190 bits (483), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 50/154 (32%), Positives = 78/154 (50%), Gaps = 2/154 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPG R+ G+ IV    + L  +++G I       L  ++  L E L  ++  + 
Sbjct: 1   MRILGIDPGSRKCGYAIVSHTSNKLSLITAGFIN-ITTTRLQEQILDLIEALDCLLDRYE 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
             E A+E +F   +  + +KL Q R    L         SEY P  +KKA+ G G   K+
Sbjct: 60  VHEVAIEDIFFGYNPKSVIKLAQFRGALSLKILERIGNFSEYTPLQVKKALTGNGKAAKE 119

Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYH 157
           Q+  M+K L+   S  K  D +DA+A+A+ HA  
Sbjct: 120 QVAFMVKRLLNITSEIKPLDISDAIAVAITHAQR 153


>gi|218961234|ref|YP_001741009.1| crossover junction endodeoxyribonuclease RuvC [Candidatus
           Cloacamonas acidaminovorans]
 gi|167729891|emb|CAO80803.1| crossover junction endodeoxyribonuclease RuvC [Candidatus
           Cloacamonas acidaminovorans]
          Length = 159

 Score =  190 bits (483), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 56/154 (36%), Positives = 85/154 (55%), Gaps = 1/154 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + IIG DPG R  G+G++ +    +       I     ++LA RL  LYE +  +++ + 
Sbjct: 1   MIIIGFDPGSRYCGYGLLQIESRKVLAAGCDVIDVTRGKTLALRLKSLYENIMQILEEYH 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           PE AAVE +F ++   +   LG +R + +L+ A+  IPV EY+P  IKK+V G G+  K+
Sbjct: 61  PEIAAVESIFFHRQVRSIFTLGHSRGVILLALAMQEIPVVEYSPREIKKSVCGNGNASKQ 120

Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYH 157
           Q+  M+  L P     K  DA DALA+A CH   
Sbjct: 121 QVRYMINQLYPLKESPKRDDAFDALAVATCHYNR 154


>gi|148926819|ref|ZP_01810498.1| crossover junction endodeoxyribonuclease [Campylobacter jejuni
           subsp. jejuni CG8486]
 gi|145844544|gb|EDK21651.1| crossover junction endodeoxyribonuclease [Campylobacter jejuni
           subsp. jejuni CG8486]
          Length = 184

 Score =  190 bits (483), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 51/157 (32%), Positives = 77/157 (49%), Gaps = 4/157 (2%)

Query: 2   RKSI--RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDV 59
            K +  +I+GIDPG R  G+ I++        + +G I       L +++ +L EGL  +
Sbjct: 22  SKGMNLKILGIDPGSRNCGYAIIEADKGKNILIEAGLIKIKPST-LQYQITELCEGLDLI 80

Query: 60  IKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVG 119
            KN   +E A+E +F   +    LKL Q R    L         +EY P  +KKAV G  
Sbjct: 81  FKNHSFDEVAIEDIFFAYNPKTVLKLAQFRGALSLKILQIHGDFAEYTPLQVKKAVTGKA 140

Query: 120 HGDKKQIHMMLKMLMPESF-FKGKDAADALAIAVCHA 155
              K+Q+  M+K L+  S   K  D  DA+A+A+ HA
Sbjct: 141 KATKEQVAFMVKRLLGLSKDIKPLDITDAIAVALTHA 177


>gi|28198788|ref|NP_779102.1| Holliday junction resolvase [Xylella fastidiosa Temecula1]
 gi|32130013|sp|Q87D03|RUVC_XYLFT RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|28056879|gb|AAO28751.1| holliday junction resolvase, endodeoxyribonuclease [Xylella
           fastidiosa Temecula1]
 gi|307579941|gb|ADN63910.1| Holliday junction resolvase [Xylella fastidiosa subsp. fastidiosa
           GB514]
          Length = 173

 Score =  190 bits (483), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 69/157 (43%), Positives = 99/157 (63%), Gaps = 1/157 (0%)

Query: 6   RIIGIDPGLRRTGWGIVDVAG-DNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           RI+GIDPG +RTG G++DV        V    +V   + S A RL QL  GL+ VI+ + 
Sbjct: 3   RILGIDPGSQRTGVGVIDVDEYGCSHHVYHAPLVLLGQSSFAGRLKQLLLGLSAVIEEYS 62

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+E A+E+VF++K+A + LKLGQAR +AI +  L  +PV EYA   IK AV+G G  DK+
Sbjct: 63  PKEVAIEKVFMSKNADSALKLGQARGVAISAVVLRDLPVHEYAARQIKLAVVGRGGADKQ 122

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSG 161
           QI  M+ +++        DAADALA+A+ HA+ + + 
Sbjct: 123 QIQHMVGVMLNLQGRLQSDAADALAVAITHAHVSATA 159


>gi|163869138|ref|YP_001610377.1| Holliday junction resolvase [Bartonella tribocorum CIP 105476]
 gi|161018824|emb|CAK02382.1| Holliday junction nuclease ruvC [Bartonella tribocorum CIP 105476]
          Length = 177

 Score =  190 bits (483), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 90/139 (64%), Positives = 115/139 (82%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M ++IRIIGIDPGLR TGWG++D+AG+ L FV++GT+ S V+  LA RLCQ+++GL++V+
Sbjct: 7   MAETIRIIGIDPGLRYTGWGVIDLAGNRLQFVAAGTVSSDVQCDLASRLCQIHKGLSEVV 66

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             + P EAAVE VFVNKDA ATLKLGQARAIA+L PA A  PV EYAPN +KK+VIGVGH
Sbjct: 67  HQFMPHEAAVEHVFVNKDATATLKLGQARAIALLVPAQANCPVFEYAPNKVKKSVIGVGH 126

Query: 121 GDKKQIHMMLKMLMPESFF 139
           G K+QIHMM+K+L+P + F
Sbjct: 127 GAKEQIHMMVKVLLPRAEF 145


>gi|315928463|gb|EFV07775.1| crossover junction endodeoxyribonuclease RuvC [Campylobacter jejuni
           subsp. jejuni DFVF1099]
          Length = 184

 Score =  190 bits (483), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 51/157 (32%), Positives = 77/157 (49%), Gaps = 4/157 (2%)

Query: 2   RKSI--RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDV 59
            K +  +I+GIDPG R  G+ I++        + +G I       L +++ +L EGL  +
Sbjct: 22  SKGMNLKILGIDPGSRNCGYAIIEANKGKNILIEAGLIKIKPST-LQYQITELCEGLDLI 80

Query: 60  IKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVG 119
            KN   +E A+E +F   +    LKL Q R    L         +EY P  +KKAV G  
Sbjct: 81  FKNHSFDEVAIEDIFFAYNPKTVLKLAQFRGALSLKILQIHGDFAEYTPLQVKKAVTGKA 140

Query: 120 HGDKKQIHMMLKMLMPESF-FKGKDAADALAIAVCHA 155
              K+Q+  M+K L+  S   K  D  DA+A+A+ HA
Sbjct: 141 KATKEQVAFMVKRLLGLSKDIKPLDITDAIAVALTHA 177


>gi|291515509|emb|CBK64719.1| crossover junction endodeoxyribonuclease RuvC [Alistipes shahii WAL
           8301]
          Length = 207

 Score =  190 bits (483), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 48/158 (30%), Positives = 85/158 (53%), Gaps = 1/158 (0%)

Query: 6   RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           RI+GIDPG    G+G++++ G  +  V  G I          +L  ++E +  ++  + P
Sbjct: 10  RIMGIDPGTNYMGYGVLEIEGRTVRSVVLGDIDLHKLPDPYAKLRYIFERVGALVDEYAP 69

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
            E A+E  F  ++  + LKLG+A+ +A+ +     I V EYAP  IK+++ G G   K+Q
Sbjct: 70  REVALESPFFGENVQSMLKLGRAQGVAMAAALSRGIDVFEYAPMRIKQSITGRGSAAKEQ 129

Query: 126 IHMML-KMLMPESFFKGKDAADALAIAVCHAYHANSGY 162
           +  ++ + L  +   K  DA D +A+A+CH + + S  
Sbjct: 130 VASIVCRTLAIDRPPKRLDATDGMAVALCHYFTSASPL 167


>gi|317014285|gb|ADU81721.1| Holliday junction resolvase [Helicobacter pylori Gambia94/24]
          Length = 157

 Score =  190 bits (483), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 49/154 (31%), Positives = 78/154 (50%), Gaps = 2/154 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPG R+ G+ I+    + L  +++G I       L  ++  L E L  ++  + 
Sbjct: 1   MRILGIDPGSRKCGYAIISHVSNKLSLITAGFIN-ITTTRLQEQILDLIEALDCLLDRYE 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
             E A+E +F   +  + +KL Q R    L         SEY P  +KKA+ G G   K+
Sbjct: 60  VHEVAIEDIFFGYNPKSVIKLAQFRGALSLKILERIGNFSEYTPLQVKKALTGNGKAAKE 119

Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYH 157
           Q+  M+K L+   S  K  D +DA+A+A+ HA  
Sbjct: 120 QVAFMVKRLLNITSEIKPLDISDAIAVAITHAQR 153


>gi|307609999|emb|CBW99531.1| crossover junction endodeoxyribonuclease ruvC [Legionella
           pneumophila 130b]
          Length = 174

 Score =  190 bits (483), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 60/162 (37%), Positives = 104/162 (64%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++  +G  + ++ SG I +     L+ +L Q+Y+G+ +++ ++ P 
Sbjct: 4   ILGIDPGSRVTGYGLIKESGRKIAYIDSGCIRTSNDVELSHKLLQIYDGICELMDHYSPT 63

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+EQ+F++ +  + LKLG AR +A+++ A  R+ + EY+   IK++V+G G  +K Q+
Sbjct: 64  EVAIEQIFMHNNPNSALKLGHARGVAMVAAASHRVKICEYSAREIKQSVVGYGAAEKDQV 123

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
             M+  L+  +    KDAADALAIA+CH++  N     I S+
Sbjct: 124 SHMVVELLQLNRAPQKDAADALAIAICHSHMRNGLSKLIGSR 165


>gi|145636552|ref|ZP_01792220.1| Holliday junction resolvase [Haemophilus influenzae PittHH]
 gi|145270377|gb|EDK10312.1| Holliday junction resolvase [Haemophilus influenzae PittHH]
          Length = 190

 Score =  190 bits (483), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 53/135 (39%), Positives = 85/135 (62%), Gaps = 1/135 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G +L ++ SG I + V + L  RL ++Y G+ ++I  ++P+
Sbjct: 4   ILGIDPGSRVTGYGVIRQTGRHLEYLGSGAIRTQV-EDLPTRLKRIYAGVAEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR  AI++     +PV EYA   +K+ V+G+G  DK Q+
Sbjct: 63  MFAIEQVFMAKNADSALKLGQARGTAIVAAVNHDLPVFEYAARLVKQTVVGIGSADKVQV 122

Query: 127 HMMLKMLMPESFFKG 141
             M+  ++  S    
Sbjct: 123 QEMITRILKLSDKPQ 137


>gi|254441770|ref|ZP_05055263.1| crossover junction endodeoxyribonuclease RuvC [Octadecabacter
           antarcticus 307]
 gi|198251848|gb|EDY76163.1| crossover junction endodeoxyribonuclease RuvC [Octadecabacter
           antarcticus 307]
          Length = 162

 Score =  190 bits (483), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 78/149 (52%), Positives = 97/149 (65%), Gaps = 1/149 (0%)

Query: 16  RTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFV 75
            TGWG++ V G  L  V++G   S     LA RL  L++ L  VI  + P+ AAVEQ FV
Sbjct: 2   NTGWGVIVVNGSRLSHVANGVCKSGKG-DLAVRLLALHDQLEAVIAEFAPDAAAVEQTFV 60

Query: 76  NKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMP 135
           N +  ATLKLGQAR IA+L PA A + V EYAPN IKKAV+GVGH DK QI  M+K+ +P
Sbjct: 61  NSNGAATLKLGQARGIAMLVPARAGLEVGEYAPNAIKKAVVGVGHADKAQIAHMVKLQLP 120

Query: 136 ESFFKGKDAADALAIAVCHAYHANSGYYK 164
                G D+ADALAIA+CHA+H  S   +
Sbjct: 121 GVMLSGPDSADALAIAICHAHHLQSASAR 149


>gi|210135070|ref|YP_002301509.1| Holliday junction resolvase [Helicobacter pylori P12]
 gi|226698756|sp|B6JMA1|RUVC_HELP2 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|210133038|gb|ACJ08029.1| holliday junction endodeoxyribonuclease [Helicobacter pylori P12]
          Length = 157

 Score =  190 bits (483), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 49/154 (31%), Positives = 78/154 (50%), Gaps = 2/154 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPG R+ G+ I+    + L  +++G I       L  ++  L E L  ++  + 
Sbjct: 1   MRILGIDPGSRKCGYAIISHTSNKLSLITAGFIN-ITTTRLQEQILDLIEALDCLLDRYE 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
             E A+E +F   +  + +KL Q R    L         SEY P  +KKA+ G G   K+
Sbjct: 60  VHEVAIEDIFFAYNPKSVIKLAQFRGALSLKILERIGNFSEYTPLQVKKALTGNGKAAKE 119

Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYH 157
           Q+  M+K L+   S  K  D +DA+A+A+ HA  
Sbjct: 120 QVAFMVKRLLNITSEIKPLDISDAIAVAITHAQR 153


>gi|262370333|ref|ZP_06063659.1| crossover junction endodeoxyribonuclease RuvC [Acinetobacter
           johnsonii SH046]
 gi|262314675|gb|EEY95716.1| crossover junction endodeoxyribonuclease RuvC [Acinetobacter
           johnsonii SH046]
          Length = 181

 Score =  190 bits (483), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 67/154 (43%), Positives = 97/154 (62%), Gaps = 1/154 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           IIGIDPG R TG+GI+   G  L FV +GTI +     +  RL +++ G+  ++K   P 
Sbjct: 4   IIGIDPGSRLTGYGIIQKEGQKLIFVDAGTIRTEA-ADMPERLKRIFAGIDRIVKFHGPT 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           EAAVEQVF+ ++  + LKLGQAR  AI +     + V+EY    IK++V+G G  DK+Q+
Sbjct: 63  EAAVEQVFMAQNPDSALKLGQARGAAIAALVNLDLQVAEYTARQIKQSVVGYGAADKEQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
            +M+  L+  S    +DAADALA A+CHA+ + S
Sbjct: 123 QIMVMRLLNLSIKPQQDAADALAAAICHAHASGS 156


>gi|237750107|ref|ZP_04580587.1| holliday junction resolvase [Helicobacter bilis ATCC 43879]
 gi|229374294|gb|EEO24685.1| holliday junction resolvase [Helicobacter bilis ATCC 43879]
          Length = 158

 Score =  190 bits (483), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 51/159 (32%), Positives = 82/159 (51%), Gaps = 2/159 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + I+GIDPG R  G+G++ V       + +G I    R  L  ++ +  EG+  ++KN+ 
Sbjct: 1   MIILGIDPGSRNCGYGVISVESGKASLLDAGIIKIETR-ELQSQIVEFIEGIDLILKNYE 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
            +E A+E +F   +  + +KL Q R    L         +EY P  +KK++ G G  DKK
Sbjct: 60  IDEVAMEDIFYAYNPKSVIKLAQFRGAISLKILQDLGNFAEYTPLQVKKSLTGNGKADKK 119

Query: 125 QIHMMLKMLMPES-FFKGKDAADALAIAVCHAYHANSGY 162
           Q+  M+K+L+      K  D +DALA+A+ HA     G 
Sbjct: 120 QVAYMVKVLLRLQCDIKPLDISDALAVALTHAQALRYGR 158


>gi|315498699|ref|YP_004087503.1| crossover junction endodeoxyribonuclease ruvc [Asticcacaulis
           excentricus CB 48]
 gi|315416711|gb|ADU13352.1| crossover junction endodeoxyribonuclease RuvC [Asticcacaulis
           excentricus CB 48]
          Length = 192

 Score =  189 bits (482), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 79/161 (49%), Positives = 109/161 (67%), Gaps = 5/161 (3%)

Query: 1   MRKS-IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDV 59
           M+ + IRIIG+DPGLRR GWG++DV G  L +V+ G I+   +  L+ RL  L+E L+ V
Sbjct: 1   MQNNRIRIIGLDPGLRRLGWGVLDVEGARLNWVAHGVILPDEKAELSVRLLYLFEELSKV 60

Query: 60  IKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVG 119
           I  +RP+EAA+E+ FVN +  +TLKLG ARA A+L+PA A + V+EYA   +KK+V+G G
Sbjct: 61  ILLYRPQEAAIEETFVNMNPASTLKLGHARAAAMLAPAQAGLSVAEYAALDVKKSVVGAG 120

Query: 120 HGDKKQIHMMLKMLMPESFFK----GKDAADALAIAVCHAY 156
             DK QI  M+K L+P +         D ADALA+AV HA+
Sbjct: 121 RADKDQILFMIKRLLPRAAAAENGLTPDMADALAVAVTHAH 161


>gi|331000257|ref|ZP_08323941.1| crossover junction endodeoxyribonuclease RuvC [Parasutterella
           excrementihominis YIT 11859]
 gi|329572423|gb|EGG54076.1| crossover junction endodeoxyribonuclease RuvC [Parasutterella
           excrementihominis YIT 11859]
          Length = 201

 Score =  189 bits (482), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 54/154 (35%), Positives = 89/154 (57%), Gaps = 2/154 (1%)

Query: 2   RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           +K++RI+GIDPGL  TG+G VD    +  +V+SG +       L+ RL  +++ L+ +I+
Sbjct: 3   QKAVRILGIDPGLNHTGYGFVDFVPGHFTYVASGVLNVPAG-ELSDRLGFIFKSLSALIE 61

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
              P  A++E+ F+N +A +++ L  AR  A+ + A   I   E +   IKK+V G G  
Sbjct: 62  EHHPNVASIEKTFLNTNAQSSMLLSHARGAAMCAVACHSILCKEISTREIKKSVTGYGAA 121

Query: 122 DKKQIHMML-KMLMPESFFKGKDAADALAIAVCH 154
           DK+Q+  M+ + L  E      D +DALA A+C+
Sbjct: 122 DKEQVQQMVLRHLKLEDTRFSPDESDALATAICY 155


>gi|299134169|ref|ZP_07027362.1| crossover junction endodeoxyribonuclease RuvC [Afipia sp. 1NLS2]
 gi|298590916|gb|EFI51118.1| crossover junction endodeoxyribonuclease RuvC [Afipia sp. 1NLS2]
          Length = 171

 Score =  189 bits (482), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 86/159 (54%), Positives = 114/159 (71%)

Query: 2   RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
            ++IRI+GIDPGLRRTGWG++DV G+ L +V  G++ S     L+ RL  ++EGL  V+ 
Sbjct: 3   SRAIRILGIDPGLRRTGWGVIDVDGNRLIYVGCGSVESRESLPLSERLLAIHEGLLKVMS 62

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
              P EAA+EQ FVNKD   TLKLGQAR +A+L PA++ I V+EYAPN +KK V+G GH 
Sbjct: 63  EHGPMEAAIEQTFVNKDGAGTLKLGQARGVAMLVPAMSGISVAEYAPNQVKKTVVGAGHA 122

Query: 122 DKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           DK QI +ML +L+P++     DAADALAIA+ HA+H  S
Sbjct: 123 DKNQIRVMLGVLLPKAQPATPDAADALAIAITHAHHRQS 161


>gi|15645496|ref|NP_207671.1| Holliday junction resolvase [Helicobacter pylori 26695]
 gi|108563285|ref|YP_627601.1| Holliday junction resolvase [Helicobacter pylori HPAG1]
 gi|254779156|ref|YP_003057261.1| Holliday junction resolvase [Helicobacter pylori B38]
 gi|3914941|sp|O25544|RUVC_HELPY RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|123073769|sp|Q1CSZ5|RUVC_HELPH RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|2314012|gb|AAD07925.1| Holliday junction endodeoxyribonuclease (ruvC) [Helicobacter pylori
           26695]
 gi|107837058|gb|ABF84927.1| Holliday junction endodeoxyribonuclease [Helicobacter pylori HPAG1]
 gi|254001067|emb|CAX29014.1| Crossover junction endodeoxyribonuclease RuvC (Holliday junction
           nuclease RuvC) (Holliday juction resolvase RuvC)
           [Helicobacter pylori B38]
          Length = 157

 Score =  189 bits (482), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 50/154 (32%), Positives = 79/154 (51%), Gaps = 2/154 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPG R+ G+ I+  A + L  +++G I       L  ++  L E L  ++  + 
Sbjct: 1   MRILGIDPGSRKCGYAIISHASNKLSLITAGFIN-ITTTRLQEQILDLIEALDCLLDRYE 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
             E A+E +F   +  + +KL Q R    L         SEY P  +KKA+ G G   K+
Sbjct: 60  VNEVAIEDIFFGYNPKSVIKLAQFRGALSLKILERIGNFSEYTPLQVKKALTGNGKAAKE 119

Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYH 157
           Q+  M+K L+   S  K  D +DA+A+A+ HA  
Sbjct: 120 QVAFMVKRLLNITSEIKPLDISDAIAVAITHAQR 153


>gi|187611418|sp|A9IYK9|RUVC_BART1 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
          Length = 171

 Score =  189 bits (482), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 90/139 (64%), Positives = 115/139 (82%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M ++IRIIGIDPGLR TGWG++D+AG+ L FV++GT+ S V+  LA RLCQ+++GL++V+
Sbjct: 1   MAETIRIIGIDPGLRYTGWGVIDLAGNRLQFVAAGTVSSDVQCDLASRLCQIHKGLSEVV 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             + P EAAVE VFVNKDA ATLKLGQARAIA+L PA A  PV EYAPN +KK+VIGVGH
Sbjct: 61  HQFMPHEAAVEHVFVNKDATATLKLGQARAIALLVPAQANCPVFEYAPNKVKKSVIGVGH 120

Query: 121 GDKKQIHMMLKMLMPESFF 139
           G K+QIHMM+K+L+P + F
Sbjct: 121 GAKEQIHMMVKVLLPRAEF 139


>gi|167754456|ref|ZP_02426583.1| hypothetical protein ALIPUT_02752 [Alistipes putredinis DSM 17216]
 gi|167659081|gb|EDS03211.1| hypothetical protein ALIPUT_02752 [Alistipes putredinis DSM 17216]
          Length = 211

 Score =  189 bits (482), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 46/163 (28%), Positives = 86/163 (52%), Gaps = 1/163 (0%)

Query: 8   IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEE 67
           +GIDPG    G+G+++V G  +  V  G I          +L  ++E +  ++  +RP E
Sbjct: 1   MGIDPGTNYMGYGVLEVCGREVRSVVLGDIDLHRMNDPYEKLRYIFERVGALVDEYRPRE 60

Query: 68  AAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIH 127
            A+E  F  ++  + LKLG+A+ +A+ +     + V EYAP  IK+ + G G   K+Q+ 
Sbjct: 61  VALESPFFGENVQSMLKLGRAQGVAMAAALSRGLQVFEYAPTRIKQCITGRGSAPKEQVA 120

Query: 128 MMLKMLM-PESFFKGKDAADALAIAVCHAYHANSGYYKIASQD 169
            ++  ++  E   +  DA D +A+A+CH + +++       +D
Sbjct: 121 ALVSSMLTIERPPRRLDATDGMAVALCHHFMSSNPLNGALGED 163


>gi|168700080|ref|ZP_02732357.1| crossover junction endodeoxyribonuclease ruvC [Gemmata
           obscuriglobus UQM 2246]
          Length = 211

 Score =  189 bits (482), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 58/165 (35%), Positives = 92/165 (55%), Gaps = 5/165 (3%)

Query: 2   RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQS---LAFRLCQLYEGLTD 58
               RI+GIDPGL+ TG+G+++V+      V +G I S   +    +A R+  LY+GL++
Sbjct: 9   PAPRRILGIDPGLQTTGYGVLEVSDKGPRVVDAGVIRSADGRDSSDMARRVKALYDGLSE 68

Query: 59  VIKNWRPEEAAVEQVFVNKD-AVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIG 117
           V+  W+P   A+EQ++ + D     + +  AR + +L+ A   IPV+ YAP  +KK V G
Sbjct: 69  VLGEWKPAALAIEQLYAHYDHPRTAILMAHARGVYLLAAAQHSIPVTSYAPTKVKKLVTG 128

Query: 118 VGHGDKKQIHMMLKMLMPESFFK-GKDAADALAIAVCHAYHANSG 161
            GH  K+Q+   +   +  +      D ADAL IA+CH +   SG
Sbjct: 129 HGHAVKEQMQYAVMRELNLAKLPEPHDVADALGIALCHYFATGSG 173


>gi|145638773|ref|ZP_01794382.1| Holliday junction resolvase [Haemophilus influenzae PittII]
 gi|229845015|ref|ZP_04465152.1| Holliday junction resolvase [Haemophilus influenzae 6P18H1]
 gi|145272368|gb|EDK12276.1| Holliday junction resolvase [Haemophilus influenzae PittII]
 gi|229812149|gb|EEP47841.1| Holliday junction resolvase [Haemophilus influenzae 6P18H1]
 gi|309750263|gb|ADO80247.1| Holliday junction resolvasome, endodeoxyribonuclease subunit
           [Haemophilus influenzae R2866]
          Length = 190

 Score =  189 bits (482), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 54/135 (40%), Positives = 85/135 (62%), Gaps = 1/135 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G +L ++ SG I + V + L  RL ++Y G+T++I  ++P 
Sbjct: 4   ILGIDPGSRVTGYGVIRQTGRHLEYLGSGAIRTQV-EDLPTRLKRIYAGVTEIITQFQPS 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR  AI++     +PV EYA   +K+ V+G+G  DK Q+
Sbjct: 63  MFAIEQVFMAKNADSALKLGQARGTAIVAAVNHDLPVFEYAARLVKQTVVGIGSADKVQV 122

Query: 127 HMMLKMLMPESFFKG 141
             M+  ++  S    
Sbjct: 123 QEMVTRILKLSDKPQ 137


>gi|33861610|ref|NP_893171.1| crossover junction endodeoxyribonuclease RuvC [Prochlorococcus
           marinus subsp. pastoris str. CCMP1986]
 gi|44888409|sp|Q7V132|RUVC_PROMP RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|33634187|emb|CAE19513.1| Crossover junction endodeoxyribonuclease RuvC [Prochlorococcus
           marinus subsp. pastoris str. CCMP1986]
          Length = 157

 Score =  189 bits (482), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 53/150 (35%), Positives = 85/150 (56%), Gaps = 2/150 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RIIGIDPGL R G+GI+++  +   F+  G I +   +    RL +++  L  +I  W+
Sbjct: 1   MRIIGIDPGLGRVGYGIIEIQNEKKIFLDCGVIETNKNKGEGDRLYEIFNDLNTLIDQWK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ AAVE+ F  +    T+ + QAR + ++  A   I VSEYAP+ +K  + G G   KK
Sbjct: 61  PDIAAVEKFFFYRS-STTISVVQARGVIMMVFAFKSIKVSEYAPSQVKLTIAGSGKASKK 119

Query: 125 QIHMMLKMLMPES-FFKGKDAADALAIAVC 153
           ++   +   +  +   K  D+ADALAIA+ 
Sbjct: 120 EVIEAVMYNLNLTRAPKPDDSADALAIALT 149


>gi|157415948|ref|YP_001483204.1| Holliday junction resolvase [Campylobacter jejuni subsp. jejuni
           81116]
 gi|187611412|sp|A8FP40|RUVC_CAMJ8 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|157386912|gb|ABV53227.1| crossover junction endodeoxyribonuclease RuvC [Campylobacter jejuni
           subsp. jejuni 81116]
          Length = 158

 Score =  189 bits (482), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 50/152 (32%), Positives = 76/152 (50%), Gaps = 2/152 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++I+GIDPG R  G+ I++        + +G I       L +++ +L EGL  + KN  
Sbjct: 1   MKILGIDPGSRNCGYAIIEANKGKNILIEAGLIKIKPNT-LQYQITELCEGLDLIFKNHS 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
            +E A+E +F   +    LKL Q R    L         +EY P  +KKAV G     K+
Sbjct: 60  FDEVAIEDIFFAYNPKTVLKLAQFRGALSLKILQIHGDFAEYTPLQVKKAVTGKAKATKE 119

Query: 125 QIHMMLKMLMPESF-FKGKDAADALAIAVCHA 155
           Q+  M+K L+  S   K  D  DA+A+A+ HA
Sbjct: 120 QVAFMVKRLLGLSKDIKPLDITDAIAVALTHA 151


>gi|89075785|ref|ZP_01162173.1| Holliday junction resolvase [Photobacterium sp. SKA34]
 gi|89048517|gb|EAR54092.1| Holliday junction resolvase [Photobacterium sp. SKA34]
          Length = 173

 Score =  189 bits (482), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 67/154 (43%), Positives = 101/154 (65%), Gaps = 1/154 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G NL ++ SG I +     +  RL Q+Y G+++VI  ++P+
Sbjct: 4   ILGIDPGSRITGYGVIRQVGRNLEYLGSGCIRTSEPG-IPGRLKQIYAGVSEVITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+E+VF+ K+A A +KLGQAR  AI++   A +PVSEYA   IK+AV+G G  DK Q+
Sbjct: 63  FFAIEEVFMGKNASAAIKLGQARGSAIVAAVNADLPVSEYAARLIKQAVVGNGGADKAQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
             M+  ++  +     DAADALA+A+CHA+   +
Sbjct: 123 QHMVCSVLKLAGKPQADAADALAVAICHAHTHKT 156


>gi|109899253|ref|YP_662508.1| crossover junction endodeoxyribonuclease RuvC [Pseudoalteromonas
           atlantica T6c]
 gi|123064359|sp|Q15RN4|RUVC_PSEA6 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|109701534|gb|ABG41454.1| crossover junction endodeoxyribonuclease RuvC [Pseudoalteromonas
           atlantica T6c]
          Length = 173

 Score =  189 bits (482), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 49/135 (36%), Positives = 83/135 (61%), Gaps = 1/135 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++  AG    ++ SG I      +LA RL Q+++G++ +I  ++P+
Sbjct: 4   ILGIDPGSRITGYGVIQRAGRQQQYLGSGCIRM-QGDALAPRLQQIFDGVSQLILQYKPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+  + LKLGQAR  AI++ +   + V+EY+   IK++V+G G+  K Q+
Sbjct: 63  MFAIEQVFMAKNPDSALKLGQARGAAIVAASNQGLDVAEYSARQIKQSVVGNGNAQKSQV 122

Query: 127 HMMLKMLMPESFFKG 141
             M+  ++       
Sbjct: 123 QHMVTFILKLPGTPQ 137


>gi|307637566|gb|ADN80016.1| Crossover junction endo deoxyribonuclease [Helicobacter pylori 908]
 gi|325996157|gb|ADZ51562.1| Crossover junction endodeoxyribonuclease [Helicobacter pylori 2018]
 gi|325997753|gb|ADZ49961.1| Crossover junction endodeoxyribonuclease [Helicobacter pylori 2017]
          Length = 157

 Score =  189 bits (482), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 50/154 (32%), Positives = 79/154 (51%), Gaps = 2/154 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPG R+ G+ I+  A + L  +++G I       L  ++  L E L  ++  + 
Sbjct: 1   MRILGIDPGSRKCGYAIISHASNKLSLITAGFIN-ITTTRLQEQILDLIEALDCLLDRYE 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
             E A+E +F   +  + +KL Q R    L         SEY P  +KKA+ G G   K+
Sbjct: 60  VHEVAIEDIFFGYNPKSVIKLAQFRGALSLKILERIGNFSEYTPLQVKKALTGNGKAAKE 119

Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYH 157
           Q+  M+K L+   S  K  D +DA+A+A+ HA  
Sbjct: 120 QVAFMVKRLLNITSEIKPLDISDAIAVAITHAQR 153


>gi|208434786|ref|YP_002266452.1| Holliday junction endodeoxyribonuclease [Helicobacter pylori G27]
 gi|308184661|ref|YP_003928794.1| Holliday junction resolvase [Helicobacter pylori SJM180]
 gi|226698757|sp|B5Z7N7|RUVC_HELPG RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|208432715|gb|ACI27586.1| Holliday junction endodeoxyribonuclease [Helicobacter pylori G27]
 gi|308060581|gb|ADO02477.1| Holliday junction resolvase [Helicobacter pylori SJM180]
 gi|317012682|gb|ADU83290.1| Holliday junction resolvase [Helicobacter pylori Lithuania75]
          Length = 157

 Score =  189 bits (482), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 50/154 (32%), Positives = 79/154 (51%), Gaps = 2/154 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPG R+ G+ I+  A + L  +++G I       L  ++  L E L  ++  + 
Sbjct: 1   MRILGIDPGSRKCGYAIISHASNKLSLITAGFIN-ITTTRLQEQILDLIEALDCLLDRYE 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
             E A+E +F   +  + +KL Q R    L         SEY P  +KKA+ G G   K+
Sbjct: 60  VNEVAIEDIFFAYNPKSVIKLAQFRGALSLKILERIGNFSEYTPLQVKKALTGNGKAAKE 119

Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYH 157
           Q+  M+K L+   S  K  D +DA+A+A+ HA  
Sbjct: 120 QVAFMVKRLLNITSEIKPLDISDAIAVAITHAQR 153


>gi|16272268|ref|NP_438480.1| Holliday junction resolvase [Haemophilus influenzae Rd KW20]
 gi|260581218|ref|ZP_05849037.1| crossover junction endodeoxyribonuclease RuvC [Haemophilus
           influenzae RdAW]
 gi|1173332|sp|P44633|RUVC_HAEIN RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|1573284|gb|AAC21978.1| crossover junction endodeoxyribonuclease (ruvC) [Haemophilus
           influenzae Rd KW20]
 gi|260092143|gb|EEW76087.1| crossover junction endodeoxyribonuclease RuvC [Haemophilus
           influenzae RdAW]
          Length = 190

 Score =  189 bits (481), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 54/135 (40%), Positives = 85/135 (62%), Gaps = 1/135 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G +L ++ SG I + V + L  RL ++Y G+T++I  ++P 
Sbjct: 4   ILGIDPGSRVTGYGVIRQTGKHLEYLGSGAIRTQV-EDLPTRLKRIYAGVTEIITQFQPN 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR  AI++     +PV EYA   +K+ V+G+G  DK Q+
Sbjct: 63  MFAIEQVFMAKNADSALKLGQARGTAIVAAVNNDLPVFEYAARLVKQTVVGIGSADKVQV 122

Query: 127 HMMLKMLMPESFFKG 141
             M+  ++  S    
Sbjct: 123 QEMVTRILKLSDKPQ 137


>gi|315931306|gb|EFV10275.1| crossover junction endodeoxyribonuclease RuvC [Campylobacter jejuni
           subsp. jejuni 327]
          Length = 158

 Score =  189 bits (481), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 50/152 (32%), Positives = 76/152 (50%), Gaps = 2/152 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++I+GIDPG R  G+ I++        + +G I       L +++ +L EGL  + KN  
Sbjct: 1   MKILGIDPGSRNCGYAIIEADKGKNILIEAGLIKIKPST-LQYQITELCEGLDLIFKNHS 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
            +E A+E +F   +    LKL Q R    L         +EY P  +KKAV G     K+
Sbjct: 60  FDEVAIEDIFFAYNPKTVLKLAQFRGALSLKILQIHGDFAEYTPLQVKKAVTGKAKATKE 119

Query: 125 QIHMMLKMLMPESF-FKGKDAADALAIAVCHA 155
           Q+  M+K L+  S   K  D  DA+A+A+ HA
Sbjct: 120 QVAFMVKRLLGLSKDIKPLDITDAIAVALTHA 151


>gi|33151782|ref|NP_873135.1| Holliday junction resolvase [Haemophilus ducreyi 35000HP]
 gi|38372439|sp|Q7VNF5|RUVC_HAEDU RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|33148003|gb|AAP95524.1| crossover junction endodeoxyribonuclease [Haemophilus ducreyi
           35000HP]
          Length = 192

 Score =  189 bits (481), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 54/135 (40%), Positives = 80/135 (59%), Gaps = 1/135 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+GI+   G  L ++ SG I       L  RL  +Y G+T++I  ++P+
Sbjct: 4   ILGIDPGSRITGYGIIRQQGRQLEYLGSGAIRINAS-DLPSRLKHIYAGVTEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR  AI++     +PV EYA   +K+ V G+G  DK Q+
Sbjct: 63  MFAIEQVFMAKNADSALKLGQARGTAIVAAVNHDLPVFEYAARLVKQTVTGIGSADKLQV 122

Query: 127 HMMLKMLMPESFFKG 141
             M+  ++  S    
Sbjct: 123 QDMVTRMLQLSAKPQ 137


>gi|57504596|ref|ZP_00370708.1| crossover junction endodeoxyribonuclease RuvC [Campylobacter coli
           RM2228]
 gi|305432572|ref|ZP_07401733.1| crossover junction endoribonuclease subunit C [Campylobacter coli
           JV20]
 gi|57019491|gb|EAL56185.1| crossover junction endodeoxyribonuclease RuvC [Campylobacter coli
           RM2228]
 gi|304444283|gb|EFM36935.1| crossover junction endoribonuclease subunit C [Campylobacter coli
           JV20]
 gi|315059175|gb|ADT73504.1| Crossover junction endodeoxyribonuclease RuvC [Campylobacter jejuni
           subsp. jejuni S3]
          Length = 158

 Score =  189 bits (481), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 50/152 (32%), Positives = 76/152 (50%), Gaps = 2/152 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++I+GIDPG R  G+ I++        + +G I       L +++ +L EGL  + KN  
Sbjct: 1   MKILGIDPGSRNCGYAIIEANKGKNILIEAGLIKIKPST-LQYQITELCEGLDLIFKNHS 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
            +E A+E +F   +    LKL Q R    L         +EY P  +KKAV G     K+
Sbjct: 60  FDEVAIEDIFFAYNPKTVLKLAQFRGALSLKILQIHGDFAEYTPLQVKKAVTGKAKATKE 119

Query: 125 QIHMMLKMLMPESF-FKGKDAADALAIAVCHA 155
           Q+  M+K L+  S   K  D  DA+A+A+ HA
Sbjct: 120 QVAFMVKRLLGLSKDIKPLDITDAIAVALTHA 151


>gi|222824549|ref|YP_002576123.1| crossover junction endodeoxyribonuclease RuvC [Campylobacter lari
           RM2100]
 gi|254767464|sp|B9KE83|RUVC_CAMLR RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|222539770|gb|ACM64871.1| crossover junction endodeoxyribonuclease RuvC [Campylobacter lari
           RM2100]
          Length = 158

 Score =  189 bits (481), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 48/151 (31%), Positives = 76/151 (50%), Gaps = 2/151 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++++GIDPG R  G+ IV+   +    + +G I       L +++ +L EGL  + KN +
Sbjct: 1   MKVLGIDPGSRYCGYAIVEKINNKNQLIEAGLIK-IKPNDLQYQITELCEGLDLIFKNHQ 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
            +E A+E +F   +    LKL Q R    L         +EY P  +KK V G     K+
Sbjct: 60  FDEVAIEDIFFAYNPKTVLKLAQFRGALSLKILQMHGEFAEYTPLQVKKTVTGKAKATKE 119

Query: 125 QIHMMLKMLMPESF-FKGKDAADALAIAVCH 154
           Q+  M+K L+  S   K  D  DA+A+A+ H
Sbjct: 120 QVAFMVKRLLGISKDIKPLDITDAIAVALTH 150


>gi|303258187|ref|ZP_07344194.1| crossover junction endodeoxyribonuclease RuvC [Burkholderiales
           bacterium 1_1_47]
 gi|302858940|gb|EFL82024.1| crossover junction endodeoxyribonuclease RuvC [Burkholderiales
           bacterium 1_1_47]
          Length = 201

 Score =  189 bits (481), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 54/154 (35%), Positives = 89/154 (57%), Gaps = 2/154 (1%)

Query: 2   RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           +K++RI+GIDPGL  TG+G+VD    +  +V+SG +       L+ RL  +++ L+ +I+
Sbjct: 3   QKAVRILGIDPGLNHTGYGLVDFVPGHFTYVASGVLNVPAG-ELSDRLGFIFKSLSALIE 61

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
              P  A++E+ F+N +A +++ L  AR  A+ + A   I   E +   IKK+V G G  
Sbjct: 62  EHHPNVASIEKTFLNTNAQSSMLLSHARGAAMCAVACHSILCKEISTREIKKSVTGYGAA 121

Query: 122 DKKQIHMML-KMLMPESFFKGKDAADALAIAVCH 154
           DK Q+  M+ + L  E      D +DALA A+C+
Sbjct: 122 DKDQVQQMVLRHLKLEDTRFSPDESDALATAICY 155


>gi|325954429|ref|YP_004238089.1| Crossover junction endodeoxyribonuclease ruvC [Weeksella virosa DSM
           16922]
 gi|323437047|gb|ADX67511.1| Crossover junction endodeoxyribonuclease ruvC [Weeksella virosa DSM
           16922]
          Length = 182

 Score =  189 bits (481), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 50/154 (32%), Positives = 85/154 (55%), Gaps = 1/154 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG    G+G++ +    L  ++   ++     +   +L +++E    +I  + P+
Sbjct: 5   ILGIDPGTTVMGFGVIAIENKQLKLITLDELLLHKLPNHEMKLKRIFEKTLAIIDQYHPD 64

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E  F  K+  + LKLG+A+ +A+ +     IP++EY+P  IK A+ G G+  K+ +
Sbjct: 65  ELAIEAPFFGKNVQSMLKLGRAQGVAMAAGLYREIPITEYSPKKIKMAITGNGNASKEMV 124

Query: 127 HMMLKMLMPE-SFFKGKDAADALAIAVCHAYHAN 159
             MLK L+      K  DA D LA AVCH ++ N
Sbjct: 125 AGMLKNLLGLKEIPKRLDATDGLAAAVCHYFNMN 158


>gi|283781354|ref|YP_003372109.1| crossover junction endodeoxyribonuclease RuvC [Pirellula staleyi
           DSM 6068]
 gi|283439807|gb|ADB18249.1| crossover junction endodeoxyribonuclease RuvC [Pirellula staleyi
           DSM 6068]
          Length = 186

 Score =  189 bits (481), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 52/163 (31%), Positives = 91/163 (55%), Gaps = 2/163 (1%)

Query: 3   KSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
           +  R++G+DPGL  TG+G++++ G +   + +G +      +LA R+ ++Y G+ DVI++
Sbjct: 12  RPRRVLGVDPGLGITGYGVIELVGMSPKIIEAGVVRGRSGATLAARIGEIYAGIHDVIQS 71

Query: 63  WRPEEAAVEQVFVNKD-AVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
             P E A+E+++ + D     + +G AR   +L+   A IPV  YA   +KK + G G  
Sbjct: 72  LAPTELAIEELYSHYDRPRTAILMGHARGAILLAGHQAGIPVLSYASTQVKKLLTGNGRA 131

Query: 122 DKKQIHMMLKMLMPESFFK-GKDAADALAIAVCHAYHANSGYY 163
            K Q+   +   +  +      D ADALAIA+CH + + SG +
Sbjct: 132 PKDQMQNAVCRELKLAAPPEPPDVADALAIALCHIHLSRSGLH 174


>gi|294673564|ref|YP_003574180.1| crossover junction endodeoxyribonuclease RuvC [Prevotella
           ruminicola 23]
 gi|294473525|gb|ADE82914.1| crossover junction endodeoxyribonuclease RuvC [Prevotella
           ruminicola 23]
          Length = 189

 Score =  189 bits (481), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 53/156 (33%), Positives = 80/156 (51%), Gaps = 3/156 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG    G+G++ V       ++ G I          +L  ++E +T +I  + P+
Sbjct: 5   ILGIDPGTNLMGYGLLKVVDGKAQMMTMGVIDLRKFPDAYLKLGHIFERVTGIIDGFLPD 64

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E  F  K+  + LKLG+A+  AI +     +P+ EYAP  IK A+ G G   K+Q+
Sbjct: 65  EMAIEAPFFGKNVQSMLKLGRAQGTAIAAAVHHGVPIHEYAPMKIKMALTGNGGASKEQV 124

Query: 127 HMMLKMLM---PESFFKGKDAADALAIAVCHAYHAN 159
             ML+ L+    +   K  DA DALA A CH     
Sbjct: 125 AGMLQRLLKIPNDEMGKYMDATDALAAAYCHFLQMG 160


>gi|319409330|emb|CBI82974.1| Holliday junction nuclease ruvC [Bartonella schoenbuchensis R1]
          Length = 167

 Score =  189 bits (481), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 94/139 (67%), Positives = 116/139 (83%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M K+IRIIGIDPGL+RTGWG+VD+ G++L F++SGT+ S  +  LA RL QL++GL+DV+
Sbjct: 1   MVKAIRIIGIDPGLQRTGWGVVDLLGNHLHFIASGTLRSDAKSHLASRLYQLHQGLSDVV 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             + P EAAVE VFVNKDA ATLKLGQARAIA+L PA A +PVSEYAPNTIKK+VIGVGH
Sbjct: 61  HRFMPHEAAVENVFVNKDATATLKLGQARAIALLVPAQAGLPVSEYAPNTIKKSVIGVGH 120

Query: 121 GDKKQIHMMLKMLMPESFF 139
           G K+QIHMM+K L+P + F
Sbjct: 121 GAKEQIHMMVKTLLPRAEF 139


>gi|258545753|ref|ZP_05705987.1| crossover junction endodeoxyribonuclease RuvC [Cardiobacterium
           hominis ATCC 15826]
 gi|258518998|gb|EEV87857.1| crossover junction endodeoxyribonuclease RuvC [Cardiobacterium
           hominis ATCC 15826]
          Length = 174

 Score =  189 bits (481), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 71/164 (43%), Positives = 112/164 (68%), Gaps = 1/164 (0%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M  S R++ IDPG R TG+GI+DV G  + +V SG I     + +  RL  +++G+T++I
Sbjct: 1   MALSRRVLAIDPGSRVTGYGIIDVLGQEVRYVDSGCIRL-ADEEMPLRLMMIHQGITELI 59

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
           +++RP+E A+E +FV+K+  + LKLGQAR +AI +  LA++PV+EYA  +IK+AV+G G 
Sbjct: 60  RSYRPQEFAIEAIFVHKNPASALKLGQARGVAICAAVLAQLPVAEYAAKSIKQAVVGKGG 119

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYK 164
            +K Q+  M+K+L+  S     DAADALA+A+ HA+H  +   +
Sbjct: 120 AEKTQVQHMVKILLNRSGVIQSDAADALAVALTHAHHLQTQRRQ 163


>gi|34499680|ref|NP_903895.1| Holliday junction resolvase [Chromobacterium violaceum ATCC 12472]
 gi|44888389|sp|Q7NQB5|RUVC_CHRVO RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|34105531|gb|AAQ61885.1| crossover junction endodeoxyribonuclease [Chromobacterium violaceum
           ATCC 12472]
          Length = 176

 Score =  189 bits (481), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 69/163 (42%), Positives = 101/163 (61%)

Query: 4   SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           S RI+GIDPG   TG+G++DV G+   +V+SG I +     LA R+  L +G+  VI  +
Sbjct: 2   SRRILGIDPGSLITGFGVIDVVGNQRHYVASGAIRTKSGSPLAERVKVLVDGIHQVIDTY 61

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RP EAA+E+VFVN +  ATL LGQAR   + +  L  +PV+EY    +K++V+G G   K
Sbjct: 62  RPTEAALERVFVNVNPAATLMLGQARGACMTALVLKDLPVAEYTALQVKQSVVGQGKAPK 121

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
           +Q+  M+  ++  S     DAADALA+A+ HA H+     K+A
Sbjct: 122 EQVQYMVVRMLNLSGTPQADAADALAVALTHANHSGGAIGKLA 164


>gi|52841518|ref|YP_095317.1| Holliday junction resolvase [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|81603398|sp|Q5ZW01|RUVC_LEGPH RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|52628629|gb|AAU27370.1| crossover junction endodeoxyribonuclease RuvC [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
          Length = 174

 Score =  189 bits (480), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 59/162 (36%), Positives = 102/162 (62%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++  +   + ++ SG I +     L+ +L Q+Y+G+ +++ ++ P 
Sbjct: 4   ILGIDPGSRVTGYGLIKESDRKIAYIDSGCIRTSNDTELSHKLLQIYDGICELMDHYSPT 63

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+EQ+F++ +  + LKLG AR +A+++ A  R  + EY+   IK++V+G G  +K Q+
Sbjct: 64  EVAIEQIFMHNNPNSALKLGHARGVAMVAAASHRAKIFEYSAREIKQSVVGYGAAEKDQV 123

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
             M+  L+  +    KDAADALAIA+CH++  N     I S+
Sbjct: 124 SHMVVELLQLNRAPQKDAADALAIAICHSHMRNGLSKLIGSR 165


>gi|182677006|ref|YP_001831152.1| Holliday junction resolvase [Beijerinckia indica subsp. indica ATCC
           9039]
 gi|226725467|sp|B2IAW3|RUVC_BEII9 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|182632889|gb|ACB93663.1| crossover junction endodeoxyribonuclease RuvC [Beijerinckia indica
           subsp. indica ATCC 9039]
          Length = 175

 Score =  189 bits (480), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 74/137 (54%), Positives = 99/137 (72%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M   +RI+GIDPGLR  GWGIV++ G NL +V+SG + S  +  LA RL  L+ GL  VI
Sbjct: 2   MPPRLRILGIDPGLRNMGWGIVELLGSNLTYVASGVVHSDGKGELAHRLKDLHVGLAGVI 61

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             + P EAA+E+ FVN+D  +TLKLGQAR IA++ PALA + V+EYA N IKK V G GH
Sbjct: 62  DAYTPHEAAIEETFVNRDPQSTLKLGQARGIALVVPALADLAVAEYAANLIKKTVTGNGH 121

Query: 121 GDKKQIHMMLKMLMPES 137
            +K+Q+ MM+K+L+P+S
Sbjct: 122 AEKQQVAMMVKILLPKS 138


>gi|152994035|ref|YP_001359756.1| Holliday junction resolvase [Sulfurovum sp. NBC37-1]
 gi|166233304|sp|A6QD40|RUVC_SULNB RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|151425896|dbj|BAF73399.1| crossover junction endodeoxyribonuclease RuvC [Sulfurovum sp.
           NBC37-1]
          Length = 159

 Score =  189 bits (480), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 49/154 (31%), Positives = 76/154 (49%), Gaps = 2/154 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + I+GIDPG R  G+ I+   G     V +G +     + L  ++ +L EG+  ++K  +
Sbjct: 1   MNILGIDPGSRNLGYCILHWDGKKFSLVEAGLLK-IKTKELQEQIVELVEGIDIILKAHQ 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
            +E A+E +F   +  + LKL Q R    L          EY P  +KKAV G G   K+
Sbjct: 60  IDEVAIEDIFFAYNPQSVLKLAQFRGALSLKILQEIGYFYEYTPLQVKKAVTGNGKATKE 119

Query: 125 QIHMMLKMLMP-ESFFKGKDAADALAIAVCHAYH 157
           Q+  M+K L+  +   K  D  DA+AIA+ H   
Sbjct: 120 QVAFMVKRLLGIKKEIKPLDITDAMAIAITHLQR 153


>gi|149203737|ref|ZP_01880706.1| Holliday junction resolvase [Roseovarius sp. TM1035]
 gi|149142854|gb|EDM30896.1| Holliday junction resolvase [Roseovarius sp. TM1035]
          Length = 214

 Score =  189 bits (480), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 85/159 (53%), Positives = 110/159 (69%), Gaps = 1/159 (0%)

Query: 3   KSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
             +R++GIDPGLR  GWG+++V+G  L  V++G I       LA RL  LYE LTD++  
Sbjct: 45  SEMRVLGIDPGLRNLGWGVIEVSGSRLSHVANG-ICHSSGPDLAARLLSLYEQLTDILHR 103

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
           + P+ AAVEQ FVNKD   TLKLGQAR IA+L PA   + V EY+PNT+KK V+GVGH  
Sbjct: 104 FDPQAAAVEQTFVNKDGAGTLKLGQARGIALLVPAQYGLTVGEYSPNTVKKTVVGVGHAA 163

Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSG 161
           K+Q+  M+K+ +P     G DAADALAIA+CHA+HA S 
Sbjct: 164 KEQVAHMVKVQLPGVVLAGPDAADALAIAICHAHHARSS 202


>gi|119356376|ref|YP_911020.1| crossover junction endodeoxyribonuclease RuvC [Chlorobium
           phaeobacteroides DSM 266]
 gi|166233187|sp|A1BDW9|RUVC_CHLPD RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|119353725|gb|ABL64596.1| crossover junction endodeoxyribonuclease RuvC [Chlorobium
           phaeobacteroides DSM 266]
          Length = 187

 Score =  189 bits (480), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 50/165 (30%), Positives = 85/165 (51%), Gaps = 1/165 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + ++G+DPG  +TG+G+V         ++ G I     +S A R+ Q+Y  L ++I + +
Sbjct: 1   MVVLGVDPGSLKTGYGVVRQDSSGFSVLTCGVIRLHSGKSHAERIGQIYRELEEIINSTK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P   A+E VF++K+A + LKLGQ R   I       + + EYAP  +K AV G G   K+
Sbjct: 61  PRRVALETVFLSKNAQSALKLGQVRGAVIALSMNTDLELHEYAPREVKSAVTGRGSASKE 120

Query: 125 QIHMMLKMLMPESF-FKGKDAADALAIAVCHAYHANSGYYKIASQ 168
           Q+  M+  ++  +      D  DAL +A+C      +   +  +Q
Sbjct: 121 QVAFMVTRMLQVTGHITSYDVTDALGLALCDLLRIGNRAAQEPAQ 165


>gi|258648397|ref|ZP_05735866.1| crossover junction endodeoxyribonuclease RuvC [Prevotella tannerae
           ATCC 51259]
 gi|260851567|gb|EEX71436.1| crossover junction endodeoxyribonuclease RuvC [Prevotella tannerae
           ATCC 51259]
          Length = 235

 Score =  189 bits (480), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 54/164 (32%), Positives = 87/164 (53%), Gaps = 5/164 (3%)

Query: 1   MRKSI--RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTD 58
           MRK+I   I+GIDPG    G+G++ +  + +   + G I     + +  +L +++E +  
Sbjct: 27  MRKTIDKVILGIDPGTNLLGYGVLHIRNNKVEMEAMGVIDLRKVKDVYLKLGRIHERIIG 86

Query: 59  VIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGV 118
           +I ++ P+E A+E  F  K+  + LKLG+A+ +AI +     IP+ EYAP  IK A+ G 
Sbjct: 87  IIDSFHPDELAIEAPFFGKNIQSMLKLGRAQGVAIAAAISRDIPIHEYAPLKIKMAITGN 146

Query: 119 GHGDKKQIHMMLKMLMPESF---FKGKDAADALAIAVCHAYHAN 159
           G   K+Q+   LK ++           DA DALA A CH     
Sbjct: 147 GQASKEQVADFLKRILSLKEEQMLSYMDATDALAAAYCHYLQDG 190


>gi|325111100|ref|YP_004272168.1| Crossover junction endodeoxyribonuclease ruvC [Planctomyces
           brasiliensis DSM 5305]
 gi|324971368|gb|ADY62146.1| Crossover junction endodeoxyribonuclease ruvC [Planctomyces
           brasiliensis DSM 5305]
          Length = 167

 Score =  189 bits (480), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 51/160 (31%), Positives = 82/160 (51%), Gaps = 2/160 (1%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M +  RI+GIDPGL RTG+G++            G I +    +LA R+ ++   +  VI
Sbjct: 1   MAQEQRILGIDPGLTRTGYGVLHAQDGRTILDEGGVIATTTNDTLADRIHEIATEVKAVI 60

Query: 61  KNWRPEEAAVEQVF-VNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVG 119
            +W+P    +EQVF + K+  + + +   R   +      R+ V  Y P  IKK + G G
Sbjct: 61  NDWKPSVMVIEQVFSLGKNPKSAILMAHVRGALLALARQERLRVVHYKPTQIKKLLTGSG 120

Query: 120 HGDKKQIHMMLKM-LMPESFFKGKDAADALAIAVCHAYHA 158
             +K+Q+ +++K  L      +  D ADALAIA+CH +  
Sbjct: 121 RANKEQMQLVVKAELGLTEVPRPHDVADALAIALCHLHTT 160


>gi|170747363|ref|YP_001753623.1| crossover junction endodeoxyribonuclease RuvC [Methylobacterium
           radiotolerans JCM 2831]
 gi|238688881|sp|B1LZP2|RUVC_METRJ RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|170653885|gb|ACB22940.1| crossover junction endodeoxyribonuclease RuvC [Methylobacterium
           radiotolerans JCM 2831]
          Length = 207

 Score =  188 bits (479), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 74/140 (52%), Positives = 98/140 (70%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M   +RI+GIDPGLRRTGWG++   G  L +   G + S     LA RL +L+EG+  ++
Sbjct: 1   MTSPVRILGIDPGLRRTGWGLITAQGTKLTYGDCGVVTSDGELPLALRLRELFEGIGRIV 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
           +  RP+E AVE+ FVNKDA ATLKLG ARA+A+L PALA +PV EYAPN IKK V G GH
Sbjct: 61  EAVRPDEVAVEETFVNKDAQATLKLGHARAMALLVPALAGLPVFEYAPNLIKKTVAGSGH 120

Query: 121 GDKKQIHMMLKMLMPESFFK 140
            +K QI  M++ L+P++ F+
Sbjct: 121 AEKVQIQAMVRFLLPKAEFR 140


>gi|297616927|ref|YP_003702086.1| crossover junction endodeoxyribonuclease RuvC [Syntrophothermus
           lipocalidus DSM 12680]
 gi|297144764|gb|ADI01521.1| crossover junction endodeoxyribonuclease RuvC [Syntrophothermus
           lipocalidus DSM 12680]
          Length = 165

 Score =  188 bits (479), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 51/161 (31%), Positives = 95/161 (59%), Gaps = 1/161 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + ++GIDPG   TG+G+++  G     +  G + +    + A RL +++  +  VI+ + 
Sbjct: 1   MIVLGIDPGTATTGYGVLEDIGGKARLIDYGVVRTSSGTNQAIRLLEIHNRIEQVIQCYS 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P   AVE++F +++A   + +GQAR + +++ A   + + EY P  +K+AV+G G+ DK+
Sbjct: 61  PSVLAVEELFFSRNAKTAITVGQARGVVLMTAAERGLVIYEYTPLEVKQAVVGFGNADKR 120

Query: 125 QIHMMLKMLMP-ESFFKGKDAADALAIAVCHAYHANSGYYK 164
           Q+  M+K ++  +   K  DAADALA+A+CH + A     +
Sbjct: 121 QVQAMVKAILQMKEIPKPDDAADALAVAICHIHAARLAKVR 161


>gi|114765388|ref|ZP_01444503.1| Holliday junction resolvase [Pelagibaca bermudensis HTCC2601]
 gi|114542231|gb|EAU45261.1| Holliday junction resolvase [Roseovarius sp. HTCC2601]
          Length = 163

 Score =  188 bits (479), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 89/161 (55%), Positives = 111/161 (68%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPGLRR GWGI+D  G  L  V++G   S     LA RL  L+  LT+V+  + 
Sbjct: 1   MRVLGIDPGLRRLGWGIIDAEGSRLRHVANGVCESEGGDDLATRLLALHRQLTEVLTRFV 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ AAVEQ FVNKDAV TLKLGQAR +A+L PA   +PV EYAPN +KK V+GVGH DK+
Sbjct: 61  PQIAAVEQTFVNKDAVGTLKLGQARGVALLVPAQFGLPVGEYAPNKVKKTVVGVGHADKR 120

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
           QI  M+KM +P     G DAADALAIA+CHA+H      +I
Sbjct: 121 QIDHMVKMQLPGVQIAGPDAADALAIAICHAHHVGPQQARI 161


>gi|325832017|ref|ZP_08165114.1| crossover junction endodeoxyribonuclease RuvC [Eggerthella sp.
           HGA1]
 gi|325486338|gb|EGC88790.1| crossover junction endodeoxyribonuclease RuvC [Eggerthella sp.
           HGA1]
          Length = 187

 Score =  188 bits (479), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 50/144 (34%), Positives = 78/144 (54%), Gaps = 1/144 (0%)

Query: 1   MRKSIR-IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDV 59
           M +  R I+GIDPGL  TGWGIV+  G  L   + G + +     LA RL +++E +  V
Sbjct: 1   MTRIERTILGIDPGLANTGWGIVEQRGPRLACTAYGCVSTPKELPLAQRLRKIHEQMAAV 60

Query: 60  IKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVG 119
           I  +RP  A +E V+   +  +    GQAR  A+++ A   + V E++P+ IK AV+G G
Sbjct: 61  IARFRPTCAGIETVWFGVNVQSAFATGQARGAALVACAECDLEVLEFSPSQIKLAVVGTG 120

Query: 120 HGDKKQIHMMLKMLMPESFFKGKD 143
             +K Q+  M++ L+        D
Sbjct: 121 SAEKDQVQYMVRQLLALEDVPRPD 144


>gi|78187496|ref|YP_375539.1| crossover junction endodeoxyribonuclease RuvC [Chlorobium luteolum
           DSM 273]
 gi|123743620|sp|Q3B2D5|RUVC_PELLD RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|78167398|gb|ABB24496.1| Crossover junction endodeoxyribonuclease RuvC [Chlorobium luteolum
           DSM 273]
          Length = 191

 Score =  188 bits (479), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 46/150 (30%), Positives = 76/150 (50%), Gaps = 1/150 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + ++GIDPG   TG+G+V         +  G +     +S   R+ +++E L  +I   +
Sbjct: 1   MIVLGIDPGSLSTGYGVVSTDDGRYRLLECGVLRLNPGKSHPARIGEIFEALDCLISRVQ 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P   ++E  FV ++  + LKLGQ R   I       + + EYAP  +K AV G G   K+
Sbjct: 61  PGRLSIETAFVGRNVQSALKLGQVRGAVIALGVHRGLMLHEYAPREVKLAVTGRGGASKE 120

Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVC 153
           Q+  M+  ++   S  K  D  DA+A+A+C
Sbjct: 121 QVAGMVTAMLGLGSVPKPLDVTDAIALALC 150


>gi|257790727|ref|YP_003181333.1| crossover junction endodeoxyribonuclease RuvC [Eggerthella lenta
           DSM 2243]
 gi|257474624|gb|ACV54944.1| crossover junction endodeoxyribonuclease RuvC [Eggerthella lenta
           DSM 2243]
          Length = 192

 Score =  188 bits (478), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 48/144 (33%), Positives = 77/144 (53%), Gaps = 1/144 (0%)

Query: 1   MRKSIR-IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDV 59
           M ++ R I+GIDPGL  TGWGIV+  G  L   + G + +     LA RL +++E +  V
Sbjct: 1   MARTERTILGIDPGLANTGWGIVEQRGPRLACTAYGCVSTAKDLPLAQRLRKIHEQMAAV 60

Query: 60  IKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVG 119
           I  + P    +E V+   +  +    GQAR  A+++ A   + V E++P+ IK AV+G G
Sbjct: 61  IARFEPACVGIETVWFGVNVQSAFATGQARGAALVACAERDLEVLEFSPSQIKLAVVGTG 120

Query: 120 HGDKKQIHMMLKMLMPESFFKGKD 143
             +K Q+  M++ L+        D
Sbjct: 121 SAEKDQVQYMVRQLLALEDIPRPD 144


>gi|332305757|ref|YP_004433608.1| crossover junction endodeoxyribonuclease RuvC [Glaciecola
           agarilytica 4H-3-7+YE-5]
 gi|332173086|gb|AEE22340.1| crossover junction endodeoxyribonuclease RuvC [Glaciecola
           agarilytica 4H-3-7+YE-5]
          Length = 173

 Score =  188 bits (478), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 62/162 (38%), Positives = 102/162 (62%), Gaps = 2/162 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++  AG    ++ SG I      +LA RL Q+++G++ +I  ++P+
Sbjct: 4   ILGIDPGSRITGYGVIQRAGRQQQYLGSGCIRM-QGDALAPRLQQIFDGVSQLILQYKPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+  + LKLGQAR  AI++ +   + V+EY+   IK++V+G G+  K Q+
Sbjct: 63  MFAIEQVFMAKNPDSALKLGQARGAAIVAASNQGLDVAEYSARQIKQSVVGNGNAQKTQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
             M+  ++        DAADALA+A+CH++   +   K+A Q
Sbjct: 123 QHMVTFILKLPGTPQADAADALAVALCHSHSEEN-LIKMAGQ 163


>gi|313158109|gb|EFR57514.1| crossover junction endodeoxyribonuclease RuvC [Alistipes sp. HGB5]
          Length = 196

 Score =  188 bits (478), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 46/156 (29%), Positives = 85/156 (54%), Gaps = 1/156 (0%)

Query: 8   IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEE 67
           +GIDPG    G+G++++ G ++  V  G I          +L  ++E +  +I  + P E
Sbjct: 1   MGIDPGTNYMGYGVLEIDGRSVRSVVLGDIDLHKLSDPYVKLRYIFERVGALIDQYAPRE 60

Query: 68  AAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIH 127
            A+E  F  ++  + LKLG+A+ +A+ +     +PVSEYAP  IK+++ G G   K+Q+ 
Sbjct: 61  VALESPFFGENVQSMLKLGRAQGVAMAAALSRGLPVSEYAPMRIKQSITGRGSAAKEQVA 120

Query: 128 MMLKMLMPES-FFKGKDAADALAIAVCHAYHANSGY 162
            ++  ++      K  DA D +A+A+CH +  ++  
Sbjct: 121 AIVCRILSLEQPPKRLDATDGMAVALCHHFTISNPL 156


>gi|269926073|ref|YP_003322696.1| crossover junction endodeoxyribonuclease RuvC [Thermobaculum
           terrenum ATCC BAA-798]
 gi|269789733|gb|ACZ41874.1| crossover junction endodeoxyribonuclease RuvC [Thermobaculum
           terrenum ATCC BAA-798]
          Length = 171

 Score =  188 bits (478), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 47/137 (34%), Positives = 75/137 (54%)

Query: 4   SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           SIR++G+DPG    G+G+V   G +      G I +  +  L  RL  ++E L ++I+  
Sbjct: 2   SIRVLGLDPGTAIVGFGLVIFDGQSYQPEKYGVIRTPSKTPLPHRLLMIHEQLDELIEEL 61

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +PE  AVE+VF  +     L +G AR + +L+ A   +P+ EY P  +K+A+IG G  +K
Sbjct: 62  KPEHVAVEEVFFARATTTALAVGHARGVILLTAAEHNLPIFEYTPLQVKQAIIGYGGAEK 121

Query: 124 KQIHMMLKMLMPESFFK 140
           KQI   +K L+      
Sbjct: 122 KQIQQFIKNLLRLESIP 138


>gi|77360815|ref|YP_340390.1| Holliday junction nuclease [Pseudoalteromonas haloplanktis TAC125]
 gi|110282924|sp|Q3IIJ0|RUVC_PSEHT RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|76875726|emb|CAI86947.1| Holliday junction nuclease [Pseudoalteromonas haloplanktis TAC125]
          Length = 174

 Score =  188 bits (478), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 67/162 (41%), Positives = 97/162 (59%), Gaps = 2/162 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G+V   G    ++ SG I          RL  +Y+G+T +I+ + PE
Sbjct: 4   ILGIDPGSRLTGYGVVAHQGSKFTYLGSGCIKL-ADHEFHIRLKMIYQGITQLIEQFSPE 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+E+VF+  +  + LKLGQAR  AI+  A+A +PV EY+   IK+AV+G G  DK Q+
Sbjct: 63  TFAIEKVFMAHNPDSALKLGQARGAAIVGAAMADLPVFEYSARQIKQAVVGNGGADKTQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
             M+K ++        DAADALAIA+CHA+   +   K+A  
Sbjct: 123 QHMVKNILKLPGTPQADAADALAIAICHAHSEQN-LIKLAGS 163


>gi|78779448|ref|YP_397560.1| Holliday junction endonuclease RuvC [Prochlorococcus marinus str.
           MIT 9312]
 gi|123554117|sp|Q31AH1|RUVC_PROM9 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|78712947|gb|ABB50124.1| Holliday junction endonuclease RuvC [Prochlorococcus marinus str.
           MIT 9312]
          Length = 157

 Score =  188 bits (478), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 53/150 (35%), Positives = 85/150 (56%), Gaps = 2/150 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RIIGIDPGL R G+GI+++  D    +  G I +   +    RL ++++ L ++I +W+
Sbjct: 1   MRIIGIDPGLARVGYGIIEIKNDKKILLDCGVIETGKEKKEEDRLYEIFKDLNELISHWK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P  AAVE+ F  +    T+ + QAR + ++  A  +I +SEY+P  IK  + G G   KK
Sbjct: 61  PNLAAVEKFFFYRS-STTISVVQARGVIMMVLASKKINISEYSPAQIKLTIAGSGKASKK 119

Query: 125 QIHMMLK-MLMPESFFKGKDAADALAIAVC 153
           ++   +   L      K  D+ADALAIA+ 
Sbjct: 120 EVLDAVMYNLELNKPPKPDDSADALAIALT 149


>gi|302344656|ref|YP_003809185.1| crossover junction endodeoxyribonuclease RuvC [Desulfarculus
           baarsii DSM 2075]
 gi|301641269|gb|ADK86591.1| crossover junction endodeoxyribonuclease RuvC [Desulfarculus
           baarsii DSM 2075]
          Length = 168

 Score =  188 bits (478), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 61/155 (39%), Positives = 98/155 (63%), Gaps = 1/155 (0%)

Query: 2   RKSIRIIGIDPGLRRTGWGIVDVAGD-NLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
              +R++G+DPG +RTG+G+V         FV++G I +    +  +RL ++++ L  VI
Sbjct: 3   TAPVRVLGLDPGSQRTGYGLVQAGPRGRAVFVAAGVISAPASLAPPWRLRKIHQELCQVI 62

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
           +  +P E AVE VF  ++A   + LGQAR +A+L+ A A + V EY+P  +KKA+ GVG 
Sbjct: 63  ERRQPLEMAVEGVFAAQNARTAIMLGQARGVALLAAAQAGLEVFEYSPAAVKKALTGVGR 122

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHA 155
            DK+Q+  M+++++      G DA+DALAIA+CH 
Sbjct: 123 ADKEQVQRMVRVVLGVEEPLGLDASDALAIAICHL 157


>gi|307545150|ref|YP_003897629.1| crossover junction endodeoxyribonuclease RuvC [Halomonas elongata
           DSM 2581]
 gi|307217174|emb|CBV42444.1| crossover junction endodeoxyribonuclease RuvC [Halomonas elongata
           DSM 2581]
          Length = 180

 Score =  188 bits (478), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 59/137 (43%), Positives = 84/137 (61%), Gaps = 1/137 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + I+GIDPG R TG+G++DV      +V+SG I +     LA RL Q+Y G++++I    
Sbjct: 1   MLILGIDPGSRITGYGVLDVTTPTPRYVASGCIRTR-GDDLAQRLAQVYAGISELIGMHG 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P E A+EQVF+ K+A + LKLGQAR  AI+  A   +PVSEY P  IK+AV G G  DK+
Sbjct: 60  PGEFAIEQVFMAKNADSALKLGQARGTAIVCAANHGLPVSEYGPRQIKQAVTGGGGADKR 119

Query: 125 QIHMMLKMLMPESFFKG 141
           Q+  M+  ++       
Sbjct: 120 QVQHMVTAVLGLDGSPQ 136


>gi|255323603|ref|ZP_05364733.1| crossover junction endodeoxyribonuclease RuvC [Campylobacter showae
           RM3277]
 gi|255299317|gb|EET78604.1| crossover junction endodeoxyribonuclease RuvC [Campylobacter showae
           RM3277]
          Length = 157

 Score =  188 bits (478), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 51/154 (33%), Positives = 79/154 (51%), Gaps = 2/154 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++I+GIDPG R  G+ IV+        + +G I      SL +++ +L EGL  + KN +
Sbjct: 1   MKILGIDPGSRNCGYAIVEKTPVKTVLIEAGLIK-IKPNSLQYQITELCEGLDLIFKNHK 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
            +E A+E +F   +    LKL Q R    L         +EY P  +KK V G    DK+
Sbjct: 60  FDEVAIEDIFFAYNPKTVLKLAQFRGALSLKILQLHGDFAEYTPLQVKKTVTGKAKADKE 119

Query: 125 QIHMMLKMLMPES-FFKGKDAADALAIAVCHAYH 157
           Q+  M+K ++  +   K  D  DA+AIA+ HA +
Sbjct: 120 QVAFMVKKILGITKEIKPLDITDAIAIALTHANN 153


>gi|332653057|ref|ZP_08418802.1| crossover junction endodeoxyribonuclease RuvC [Ruminococcaceae
           bacterium D16]
 gi|332518203|gb|EGJ47806.1| crossover junction endodeoxyribonuclease RuvC [Ruminococcaceae
           bacterium D16]
          Length = 184

 Score =  188 bits (478), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 40/140 (28%), Positives = 73/140 (52%)

Query: 3   KSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
            S+ I+GIDPG+   G+G++         +  G I +     L+ RL Q+   + ++I+ 
Sbjct: 10  ASMIILGIDPGVATIGFGVIKAQRGKNTLIQYGVITTPPGIPLSSRLLQISNDMEELIRT 69

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
           + P+E AVE++F +K+    + +   R + +L+     +PV EY P  +K+AV G G  D
Sbjct: 70  FHPDEMAVEELFFSKNITTGIAVAHGRGVILLAAEKLGVPVFEYTPMQVKQAVAGYGGAD 129

Query: 123 KKQIHMMLKMLMPESFFKGK 142
           K+Q+ +M + L+        
Sbjct: 130 KRQVMLMTQRLLNMKQIPRP 149


>gi|57238746|ref|YP_179882.1| crossover junction endodeoxyribonuclease RuvC [Ehrlichia
           ruminantium str. Welgevonden]
 gi|58578667|ref|YP_196879.1| crossover junction endodeoxyribonuclease RuvC [Ehrlichia
           ruminantium str. Welgevonden]
 gi|81557368|sp|Q5HCG1|RUVC_EHRRW RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|57160825|emb|CAH57723.1| crossover junction endodeoxyribonuclease RuvC [Ehrlichia
           ruminantium str. Welgevonden]
 gi|58417293|emb|CAI26497.1| Crossover junction endodeoxyribonuclease RuvC [Ehrlichia
           ruminantium str. Welgevonden]
          Length = 160

 Score =  188 bits (478), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 51/156 (32%), Positives = 99/156 (63%), Gaps = 3/156 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDN---LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           + IIGIDP L  TGW I+ V  +N   +  V +G+I++  ++++  RL ++Y  L +++ 
Sbjct: 1   MNIIGIDPSLNSTGWAILSVHDNNYNEIRLVDNGSILTSNKKTIGERLNKIYSELLNILN 60

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
           +++ + A++E++F+NK+  ++  L  AR + +L+  +A IP+ EY+ N +KK++ G GH 
Sbjct: 61  SYKVDTASMEEIFINKNPKSSTLLCYARGVLLLTLNVACIPLFEYSANRVKKSITGNGHA 120

Query: 122 DKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYH 157
            K+Q+  M++ ++        D +DA+A+A+CH Y 
Sbjct: 121 KKEQVCFMIENILNIKCHGTYDISDAIAVAICHIYS 156


>gi|303253271|ref|ZP_07339420.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|307248176|ref|ZP_07530204.1| Crossover junction endodeoxyribonuclease ruvC [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|302647953|gb|EFL78160.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|306855353|gb|EFM87528.1| Crossover junction endodeoxyribonuclease ruvC [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
          Length = 192

 Score =  188 bits (478), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 54/135 (40%), Positives = 83/135 (61%), Gaps = 1/135 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G +L ++ SG I + V   L  RL ++Y G+T++I  + P+
Sbjct: 4   ILGIDPGSRVTGYGVIRQTGCHLEYLGSGAIRTSVD-DLPTRLKRIYAGVTEIITQFHPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR  AI++     +PV EYA   +K+ V G+G  DK Q+
Sbjct: 63  MFAIEQVFMAKNADSALKLGQARGTAIVAAVNHDLPVFEYAARLVKQTVTGIGSADKIQV 122

Query: 127 HMMLKMLMPESFFKG 141
             M+  ++  S    
Sbjct: 123 QDMVTRMLQLSSKPQ 137


>gi|268678644|ref|YP_003303075.1| crossover junction endodeoxyribonuclease RuvC [Sulfurospirillum
           deleyianum DSM 6946]
 gi|268616675|gb|ACZ11040.1| crossover junction endodeoxyribonuclease RuvC [Sulfurospirillum
           deleyianum DSM 6946]
          Length = 157

 Score =  188 bits (478), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 52/154 (33%), Positives = 78/154 (50%), Gaps = 2/154 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + I+GIDPG R  G+ I+    + L  V +G I     + L  ++ +L EGL  + K+  
Sbjct: 1   MTILGIDPGTRNCGYSILRKEKNRLVLVEAGLIK-IKEKILQHQIMELVEGLDVLFKHHE 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
            +E A+E +F   +    LKL Q R    L     +   SEY P  +KKAV G G   K+
Sbjct: 60  IDEVAIEDIFYAYNPQTVLKLAQFRGALSLKILQVKGNFSEYTPLQVKKAVTGNGKAAKE 119

Query: 125 QIHMMLKMLMP-ESFFKGKDAADALAIAVCHAYH 157
           Q+  M+K ++  +   K  D  DA+AIA+ HA  
Sbjct: 120 QVAFMVKKILGIKQEIKPLDITDAIAIAITHAQR 153


>gi|283953665|ref|ZP_06371196.1| crossover junction endodeoxyribonuclease RuvC [Campylobacter jejuni
           subsp. jejuni 414]
 gi|283794706|gb|EFC33444.1| crossover junction endodeoxyribonuclease RuvC [Campylobacter jejuni
           subsp. jejuni 414]
          Length = 158

 Score =  187 bits (477), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 49/152 (32%), Positives = 76/152 (50%), Gaps = 2/152 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++I+GIDPG R  G+ I+++       + +G I       L +++ +L EGL  + KN  
Sbjct: 1   MKILGIDPGSRNCGYAIIEINKTKNILIEAGLIKIKPST-LQYQITELCEGLDLIFKNHS 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
            +E A+E +F   +    LKL Q R    L         +EY P  +KKAV G     K+
Sbjct: 60  FDEVAIEDIFFAYNPKTVLKLAQFRGALSLKILQIHGDFAEYTPLQVKKAVTGKAKATKE 119

Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHA 155
           Q+  M+K L+      K  D  DA+A+A+ HA
Sbjct: 120 QVAFMVKRLLGLRKDIKPLDITDAIAVALTHA 151


>gi|332701179|ref|ZP_08421267.1| Crossover junction endodeoxyribonuclease ruvC [Desulfovibrio
           africanus str. Walvis Bay]
 gi|332551328|gb|EGJ48372.1| Crossover junction endodeoxyribonuclease ruvC [Desulfovibrio
           africanus str. Walvis Bay]
          Length = 178

 Score =  187 bits (477), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 65/168 (38%), Positives = 100/168 (59%), Gaps = 4/168 (2%)

Query: 4   SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           SI ++G+DPG RRTGWG+V  A   L  V++G + +  +  L  RL +++  L  +I   
Sbjct: 8   SITVLGLDPGSRRTGWGVVHEASGKLSLVAAGVVATDAKTDLCVRLGRIFTELAKLIHEH 67

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RP EAAVE VFV+++ ++ LKLGQAR  AI + A   +PVS Y P+ +KK+++G G  +K
Sbjct: 68  RPAEAAVENVFVSQNIMSALKLGQARGAAIAACAHLGLPVSSYEPSLVKKSLVGGGRAEK 127

Query: 124 KQIHMMLKMLMP---ESFFKGKDAADALAIAVCHAYHAN-SGYYKIAS 167
            Q+  M+  ++    +    G DA DALA+A+CH      +   + A 
Sbjct: 128 GQVAFMVGRMLNVRLDDLKLGLDATDALAVAICHLNQRRLTRLTRQAG 175


>gi|54294186|ref|YP_126601.1| crossover junction endodeoxyribonuclease ruvC [Legionella
           pneumophila str. Lens]
 gi|81601404|sp|Q5WX48|RUVC_LEGPL RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|53754018|emb|CAH15489.1| Crossover junction endodeoxyribonuclease ruvC [Legionella
           pneumophila str. Lens]
          Length = 174

 Score =  187 bits (477), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 59/162 (36%), Positives = 103/162 (63%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++  +   + ++ SG I +     L+ +L Q+Y+G+ +++ ++ P 
Sbjct: 4   ILGIDPGSRVTGYGLIKESDRKIAYIDSGCIRTSNDVELSHKLLQIYDGICELMDHYSPT 63

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+EQ+F++ +  + LKLG AR +A+++ A  R+ + EY+   IK++V+G G  +K Q+
Sbjct: 64  EVAIEQIFMHNNPNSALKLGHARGVAMVAAASHRVKICEYSAREIKQSVVGYGAAEKDQV 123

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
             M+  L+  +    KDAADALAIA+CH++  N     I S+
Sbjct: 124 SHMVVELLQLNRAPQKDAADALAIAICHSHMRNGLSKLIGSR 165


>gi|256823081|ref|YP_003147044.1| crossover junction endodeoxyribonuclease RuvC [Kangiella koreensis
           DSM 16069]
 gi|256796620|gb|ACV27276.1| crossover junction endodeoxyribonuclease RuvC [Kangiella koreensis
           DSM 16069]
          Length = 176

 Score =  187 bits (477), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 52/139 (37%), Positives = 89/139 (64%), Gaps = 5/139 (3%)

Query: 7   IIGIDPGLRRTGWGIVDVAG----DNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
           I+GIDPG R TG+GI++V G    +   +++SG I     ++L  +L Q+++ + ++I+ 
Sbjct: 4   ILGIDPGSRLTGFGIIEVGGQIPANRPRYITSGCIR-IKDETLDLKLKQIFDSVCELIQE 62

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
           ++P+E A+E VF++K+A + LKLGQAR  AI++ +   +PVSEY    +K++V+G G  D
Sbjct: 63  FKPDEFAIESVFLSKNADSALKLGQARGAAIVAASHYALPVSEYPATKVKQSVVGTGGAD 122

Query: 123 KKQIHMMLKMLMPESFFKG 141
           K Q+  M+K L+       
Sbjct: 123 KSQVQHMVKTLLKLPTSPQ 141


>gi|223038423|ref|ZP_03608717.1| crossover junction endodeoxyribonuclease RuvC [Campylobacter rectus
           RM3267]
 gi|222880280|gb|EEF15367.1| crossover junction endodeoxyribonuclease RuvC [Campylobacter rectus
           RM3267]
          Length = 157

 Score =  187 bits (477), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 51/154 (33%), Positives = 78/154 (50%), Gaps = 2/154 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++I+GIDPG R  G+ IV+        + +G I      SL +++ +L EGL  + KN +
Sbjct: 1   MKILGIDPGSRNCGYAIVEKTPVKTALIEAGLIK-IKPNSLQYQITELCEGLDLIFKNHK 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
            +E A+E +F   +    LKL Q R    L          EY P  +KK V G    DK+
Sbjct: 60  FDEVAIEDIFFAYNPKTVLKLAQFRGALSLKILQLHGDFVEYTPLQVKKTVTGKAKADKE 119

Query: 125 QIHMMLKMLMPES-FFKGKDAADALAIAVCHAYH 157
           Q+  M+K ++  +   K  D  DA+AIA+ HA +
Sbjct: 120 QVAFMVKKILGITKEIKPLDVTDAIAIALTHANN 153


>gi|189424312|ref|YP_001951489.1| Holliday junction resolvase [Geobacter lovleyi SZ]
 gi|238692134|sp|B3E789|RUVC_GEOLS RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|189420571|gb|ACD94969.1| crossover junction endodeoxyribonuclease RuvC [Geobacter lovleyi
           SZ]
          Length = 178

 Score =  187 bits (477), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 52/137 (37%), Positives = 82/137 (59%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPG R TG+G+V+  G  L  + +G + +   +    RL  ++EGL+ VI  + 
Sbjct: 1   MRVLGIDPGSRITGYGLVEQHGSRLVHLDNGAVFTDKAKDFPDRLRLIFEGLSRVIAEYA 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  AVE V+V+++  A LKLGQAR  AI +   A +PV EY  + +K+AV+G G   K+
Sbjct: 61  PDAVAVEDVYVSENVRAALKLGQARGAAIAAAVHAGLPVFEYTASQVKQAVVGQGRAGKE 120

Query: 125 QIHMMLKMLMPESFFKG 141
           Q+  M+K L+       
Sbjct: 121 QVQKMVKALLGLPEIAQ 137


>gi|251793067|ref|YP_003007793.1| Holliday junction resolvase [Aggregatibacter aphrophilus NJ8700]
 gi|247534460|gb|ACS97706.1| crossover junction endodeoxyribonuclease RuvC [Aggregatibacter
           aphrophilus NJ8700]
          Length = 190

 Score =  187 bits (477), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 54/135 (40%), Positives = 83/135 (61%), Gaps = 1/135 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I + V   L  RL ++Y G+T++I  ++P+
Sbjct: 4   ILGIDPGSRVTGYGVIRQHGRQLEYLGSGAIRTQVD-DLPTRLKRIYAGVTEIITQFQPD 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
              +EQVF+ K+A + LKLGQAR  AI++     +PV EYA   IK+ V+G+G  DK Q+
Sbjct: 63  MFVIEQVFMAKNADSALKLGQARGTAIVAAVNHDLPVFEYAARLIKQTVVGIGSADKIQV 122

Query: 127 HMMLKMLMPESFFKG 141
             M+  ++  S    
Sbjct: 123 QDMVMRILNLSDKPQ 137


>gi|331007230|ref|ZP_08330437.1| Crossover junction endodeoxyribonuclease RuvC [gamma
           proteobacterium IMCC1989]
 gi|330418946|gb|EGG93405.1| Crossover junction endodeoxyribonuclease RuvC [gamma
           proteobacterium IMCC1989]
          Length = 172

 Score =  187 bits (477), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 49/135 (36%), Positives = 81/135 (60%), Gaps = 1/135 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R+TG+G+++       +V+SG I      +L  RL  ++  + +VI+ + P+
Sbjct: 4   ILGIDPGSRKTGFGVINNINGRCEYVASGVIRL-KNDTLPERLKVIFHSVCEVIEEYCPQ 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           + A+EQVF+ K+A + L LGQAR  AI++     + V+EY    +K++V+G G  DK Q+
Sbjct: 63  QVAIEQVFMAKNANSALILGQARGAAIVAAVSHDLEVAEYEAKKVKQSVVGNGGADKTQV 122

Query: 127 HMMLKMLMPESFFKG 141
             M+K L+  S    
Sbjct: 123 QHMVKQLLKLSGIPQ 137


>gi|313901945|ref|ZP_07835362.1| crossover junction endodeoxyribonuclease RuvC [Thermaerobacter
           subterraneus DSM 13965]
 gi|313467791|gb|EFR63288.1| crossover junction endodeoxyribonuclease RuvC [Thermaerobacter
           subterraneus DSM 13965]
          Length = 187

 Score =  187 bits (477), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 51/136 (37%), Positives = 85/136 (62%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++++GIDPG    G+G+V VAG  L  V+ G I +   Q  A RL  +Y  L ++++ ++
Sbjct: 1   MQVLGIDPGTATMGFGVVAVAGTTLVPVTYGVIRTPASQPPAQRLAAIYRDLQELLRRYQ 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  AVE++F  K+  + L +GQAR +A+L+ A A +PV EYAP+ +K+AV+G G   K 
Sbjct: 61  PQAMAVERLFFQKNRSSALHVGQARGVALLAAAQAGLPVHEYAPHEVKQAVVGYGRASKV 120

Query: 125 QIHMMLKMLMPESFFK 140
           Q+  M++ L+  +   
Sbjct: 121 QVQRMVQALLGLARPP 136


>gi|225620451|ref|YP_002721708.1| crossover junction endodeoxyribonuclease [Brachyspira
           hyodysenteriae WA1]
 gi|254767461|sp|C0R1L6|RUVC_BRAHW RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|225215270|gb|ACN84004.1| crossover junction endodeoxyribonuclease [Brachyspira
           hyodysenteriae WA1]
          Length = 160

 Score =  187 bits (477), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 50/153 (32%), Positives = 79/153 (51%), Gaps = 1/153 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +  +GIDPG  R G+  ++        V SG I +   Q    RL  +Y  L ++IK ++
Sbjct: 1   MITLGIDPGFARCGYAFIEAKNSAYKIVDSGLIETFQNQEYNQRLSFIYTQLDELIKKYK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P  AA+E++F +K+    +K+ +AR + IL+  L  I   EY P  +K  + G G+ +K 
Sbjct: 61  PNNAAIEELFFSKNTKTAIKVAEARGVIILALTLNNIEFQEYKPKEVKSQITGNGNANKD 120

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYH 157
            +  M+  L   S     D ADA+AIA+ HA  
Sbjct: 121 AMMKMVN-LFTGSNIIQDDTADAVAIALAHASR 152


>gi|46445653|ref|YP_007018.1| Holliday junction resolvase [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|81627840|sp|Q6MFA6|RUVC_PARUW RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|46399294|emb|CAF22743.1| probable Holliday junction endodeoxyribonuclease [Candidatus
           Protochlamydia amoebophila UWE25]
          Length = 168

 Score =  187 bits (477), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 43/142 (30%), Positives = 73/142 (51%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M   + I+G+DPG + TG+G++ + G     V  G I       L+ R   + +G+  +I
Sbjct: 1   MSNQVIILGLDPGTKITGFGVIRIEGHQYVPVDYGCIRPPSHYKLSERYLVICQGVEQLI 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
              +P    VE  +V+K+  + +KLG AR + +++     IP+ EYAP+  K AV+G G 
Sbjct: 61  DQHQPHAVVVETQYVSKNVQSAMKLGMARGVIMIAAKKRGIPIYEYAPSKAKLAVVGTGR 120

Query: 121 GDKKQIHMMLKMLMPESFFKGK 142
             K Q+  M++ L+  S     
Sbjct: 121 ASKYQVQGMVQRLLNLSIPPTP 142


>gi|301169023|emb|CBW28620.1| component of RuvABC resolvasome, endonuclease [Haemophilus
           influenzae 10810]
          Length = 190

 Score =  187 bits (477), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 53/135 (39%), Positives = 84/135 (62%), Gaps = 1/135 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R  G+G++   G +L ++ SG I + V + L  RL ++Y G+T++I  ++P 
Sbjct: 4   ILGIDPGSRVAGYGVIRQTGRHLEYLGSGAIRTQV-EDLPTRLKRIYAGVTEIITQFQPN 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR  AI++     +PV EYA   +K+ V+G+G  DK Q+
Sbjct: 63  MFAIEQVFMAKNADSALKLGQARGTAIVAAVNHDLPVFEYAARLVKQTVVGIGSADKVQV 122

Query: 127 HMMLKMLMPESFFKG 141
             M+  ++  S    
Sbjct: 123 QEMVTRILKLSDKPQ 137


>gi|126732348|ref|ZP_01748148.1| Holliday junction resolvase [Sagittula stellata E-37]
 gi|126707217|gb|EBA06283.1| Holliday junction resolvase [Sagittula stellata E-37]
          Length = 162

 Score =  187 bits (477), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 83/161 (51%), Positives = 110/161 (68%), Gaps = 1/161 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPGLR  GWG+++V G  L  V++G I       LA RL  L++ LT V + + 
Sbjct: 1   MRVLGIDPGLRHLGWGVIEVDGSRLRHVANG-ICDSEGTDLALRLLSLHDQLTRVFEAYA 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+EAA+E+ FVNKDAV TLKLGQAR +A+L PA   + + EYAPN +KK V+GVGH DK 
Sbjct: 60  PDEAAIEKTFVNKDAVGTLKLGQARGVALLVPAQFGLSIGEYAPNQVKKTVVGVGHADKN 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
           QI  M+KM +P     G DAADALAIA+CHA+ +     K+
Sbjct: 120 QILHMVKMQLPGCQPVGPDAADALAIAICHAHQSGVQRMKV 160


>gi|205355741|ref|ZP_03222511.1| crossover junction endodeoxyribonuclease [Campylobacter jejuni
           subsp. jejuni CG8421]
 gi|205346518|gb|EDZ33151.1| crossover junction endodeoxyribonuclease [Campylobacter jejuni
           subsp. jejuni CG8421]
          Length = 184

 Score =  187 bits (477), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 51/157 (32%), Positives = 78/157 (49%), Gaps = 4/157 (2%)

Query: 2   RKSI--RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDV 59
            K +  +I+GIDPG R  G+ I++        + +G I      +L +++ +L EGL  +
Sbjct: 22  SKGMNLKILGIDPGSRNCGYAIIEANKGKNILMEAGLIK-IKLSTLQYQITELCEGLDLI 80

Query: 60  IKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVG 119
            KN   +E A+E +F   +    LKL Q R    L         +EY P  +KKAV G  
Sbjct: 81  FKNHSFDEVAIEDIFFAYNPKTVLKLAQFRGALSLKILQIHGDFAEYTPLQVKKAVTGKA 140

Query: 120 HGDKKQIHMMLKMLMPESF-FKGKDAADALAIAVCHA 155
              K+Q+  M+K L+  S   K  D  DA+A+A+ HA
Sbjct: 141 KATKEQVAFMVKRLLGLSKDIKPLDITDAIAVALTHA 177


>gi|78357367|ref|YP_388816.1| Holliday junction resolvase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|90146452|sp|Q30YX5|RUVC_DESDG RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|78219772|gb|ABB39121.1| Holliday junction endonuclease RuvC [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 166

 Score =  187 bits (476), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 66/166 (39%), Positives = 92/166 (55%), Gaps = 3/166 (1%)

Query: 2   RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
            + I ++GIDPG R TGWGIV      L  V  G +        + RL  +Y GL +VI 
Sbjct: 3   TQGITVLGIDPGSRTTGWGIVREVSGVLTLVDCGAVR-PRGDEFSDRLGAIYHGLHEVIA 61

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
              P+EA+VE VF  K+A + LKLGQAR  A+ + A   +PV+ YAP  IKK ++GVG  
Sbjct: 62  RHMPDEASVENVFTAKNAASALKLGQARGAAVAACAAHHLPVASYAPTEIKKTIVGVGRA 121

Query: 122 DKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
           +K+Q+  M+  L+      G D  DALA A+CH         ++A+
Sbjct: 122 EKEQVSFMVARLLGVKGDWGPDTGDALAAAICHLNMRR--LRRLAA 165


>gi|332298167|ref|YP_004440089.1| Crossover junction endodeoxyribonuclease ruvC [Treponema
           brennaborense DSM 12168]
 gi|332181270|gb|AEE16958.1| Crossover junction endodeoxyribonuclease ruvC [Treponema
           brennaborense DSM 12168]
          Length = 189

 Score =  187 bits (476), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 45/141 (31%), Positives = 75/141 (53%)

Query: 3   KSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
           ++ R++GIDPGL  TG+G+V+  G+    V+ G I +        RL  +Y  L  V+  
Sbjct: 31  RTRRVLGIDPGLASTGYGVVESCGNRYRLVAYGVIETPASAPRGERLLAIYSRLCAVLDE 90

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
           W+P EA +E ++  K+  + + + +AR +A L  A   +P+ EY PNTIK +V G     
Sbjct: 91  WQPREAGMETLYFAKNVSSAMAVAEARGVATLCLAQHCVPLGEYTPNTIKLSVTGTASAG 150

Query: 123 KKQIHMMLKMLMPESFFKGKD 143
           KK +   +++L+        D
Sbjct: 151 KKLVQEYVRLLLGLEAPPEPD 171


>gi|268608400|ref|ZP_06142127.1| crossover junction endodeoxyribonuclease RuvC [Ruminococcus
           flavefaciens FD-1]
          Length = 162

 Score =  187 bits (476), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 44/140 (31%), Positives = 76/140 (54%), Gaps = 1/140 (0%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M+K IRI+GIDPG    G+G++D  G     +  G +++        RL  ++E +  + 
Sbjct: 1   MKK-IRILGIDPGYAIVGFGVLDYDGVRFTPIEYGAVLTEAGTPFPERLRAIHEDIEFIF 59

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
           + +RP+  AVE+++   +    + + QAR I +LS A   +PVSEY P  +K +V G G 
Sbjct: 60  EKFRPDCMAVERLYFTTNQKTAIDVAQARGITVLSAAKRNVPVSEYTPLQVKLSVTGYGK 119

Query: 121 GDKKQIHMMLKMLMPESFFK 140
            +K+Q+  M + L+  +   
Sbjct: 120 AEKRQVMEMTRQLLGLAQIP 139


>gi|120554626|ref|YP_958977.1| crossover junction endodeoxyribonuclease RuvC [Marinobacter
           aquaeolei VT8]
 gi|166233202|sp|A1U1C1|RUVC_MARAV RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|120324475|gb|ABM18790.1| Holliday junction endonuclease RuvC [Marinobacter aquaeolei VT8]
          Length = 175

 Score =  187 bits (476), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 66/154 (42%), Positives = 97/154 (62%), Gaps = 1/154 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+G+DPG R TG+G++   G  L ++ SG I     + +A RL  ++  L  +I  +RPE
Sbjct: 4   ILGVDPGSRITGYGLIRSEGRLLEYLDSGCIR-VGEKPMAERLQTIFHSLAVLIGEYRPE 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+EQVF+ ++  + LKLGQAR  AI+S A + + V EY+   +K+AV+G G  DK Q+
Sbjct: 63  EFAIEQVFMARNPDSALKLGQARGAAIVSAANSGLAVHEYSARQVKQAVVGTGGADKSQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
             M++ L+  S     DAADALAIA+CHA+   S
Sbjct: 123 QHMVQALLGLSRKPQADAADALAIALCHAHMNQS 156


>gi|258645439|ref|ZP_05732908.1| crossover junction endodeoxyribonuclease RuvC [Dialister invisus
           DSM 15470]
 gi|260402790|gb|EEW96337.1| crossover junction endodeoxyribonuclease RuvC [Dialister invisus
           DSM 15470]
          Length = 165

 Score =  187 bits (476), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 49/154 (31%), Positives = 85/154 (55%), Gaps = 1/154 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPG  R G+GIV+  G+ +  ++ G I +   Q+   RL  +YEG+ ++I+ +R
Sbjct: 1   MRVLGIDPGTGRCGFGIVEKHGNRIVPINYGVIETFKEQNSLERLNIVYEGVAELIEMYR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P    VE ++ N +    +++ QAR + +L+     +P     P  +K+ + G G  +KK
Sbjct: 61  PHFMGVESLYFNTNITTGIEVAQARGVILLAGYRQSVPAVNVTPLQVKQQLAGYGRAEKK 120

Query: 125 QIHMMLKMLMP-ESFFKGKDAADALAIAVCHAYH 157
           Q+  M+  +M   +     DAADALAI +   Y 
Sbjct: 121 QVIEMVMRIMHINTKINPDDAADALAIGLTAIYQ 154


>gi|217976202|ref|YP_002360349.1| Holliday junction resolvase [Methylocella silvestris BL2]
 gi|254767478|sp|B8EJI4|RUVC_METSB RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|217501578|gb|ACK48987.1| crossover junction endodeoxyribonuclease RuvC [Methylocella
           silvestris BL2]
          Length = 176

 Score =  187 bits (476), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 76/137 (55%), Positives = 99/137 (72%)

Query: 2   RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           R +IRIIGIDPGLR  GWG+++ +G  L F++ G++ S    SLA RLC L+EGL  VI 
Sbjct: 3   RAAIRIIGIDPGLRNMGWGVIEASGSRLSFIACGSVHSQAGSSLAERLCALHEGLLGVIA 62

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
           +  P EAAVE+ FVN D  + LKLGQAR +A+++PALA +PV+EYA N IKK V+G GH 
Sbjct: 63  DLSPMEAAVEETFVNCDPQSALKLGQARGVALVAPALAGLPVAEYAANLIKKTVVGNGHA 122

Query: 122 DKKQIHMMLKMLMPESF 138
           +K QI MM+K L+P S 
Sbjct: 123 EKAQIAMMVKFLLPMSE 139


>gi|317011091|gb|ADU84838.1| Holliday junction resolvase [Helicobacter pylori SouthAfrica7]
          Length = 157

 Score =  187 bits (476), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 49/154 (31%), Positives = 79/154 (51%), Gaps = 2/154 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPG ++ G+ I+  A + L  +++G I       L  ++  L E L  ++  + 
Sbjct: 1   MRILGIDPGSKKCGYAIISYASNKLSLITAGFIN-ITTTRLQEQILDLIEALDCLLDRYE 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
             E A+E +F   +  + +KL Q R    L         SEY P  +KKA+ G G   K+
Sbjct: 60  VHEVAIEDIFFGYNPKSVIKLAQFRGALSLKILERIGNFSEYTPLQVKKALTGNGKAAKE 119

Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYH 157
           Q+  M+K L+   S  K  D +DA+A+A+ HA  
Sbjct: 120 QVAFMVKRLLHITSEIKPLDISDAIAVAITHAQR 153


>gi|218666715|ref|YP_002424574.1| crossover junction endodeoxyribonuclease RuvC [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|218518928|gb|ACK79514.1| crossover junction endodeoxyribonuclease RuvC [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 166

 Score =  187 bits (476), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 68/157 (43%), Positives = 96/157 (61%), Gaps = 2/157 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAG-DNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +RIIGIDPG  RTG+GI++      L  V+ G +     Q    R+  +Y  L  +I  +
Sbjct: 1   MRIIGIDPGSLRTGYGIIESDAAGELRHVAHGCLN-VSGQPFLERIGAIYRELKQIIGTY 59

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            PEEAA+EQVF+ ++A + LKLGQAR  A+++   A +PV EY    IKKA +G GH  K
Sbjct: 60  HPEEAAIEQVFMARNADSALKLGQARGAALVALLEAGLPVEEYTALQIKKAAVGGGHAAK 119

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           +Q+  M++ L+  S     DAADALA A+CHA+H  +
Sbjct: 120 EQVQSMVRWLLKLSENPQADAADALACAICHAHHGRT 156


>gi|256831251|ref|YP_003159979.1| crossover junction endodeoxyribonuclease RuvC [Desulfomicrobium
           baculatum DSM 4028]
 gi|256580427|gb|ACU91563.1| crossover junction endodeoxyribonuclease RuvC [Desulfomicrobium
           baculatum DSM 4028]
          Length = 173

 Score =  187 bits (475), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 52/169 (30%), Positives = 88/169 (52%), Gaps = 1/169 (0%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M     I+G+DPG R  G+G+V      L  V +G +     ++++ RL  +Y  +++++
Sbjct: 1   MAMERIILGVDPGSRCMGYGLVRERSGVLSLVEAGVVR-PGEEAMSARLGLMYTRISELL 59

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
               P   AVE VF  +++ + LKLGQAR   + +  +    V  Y P  +KK+++G G 
Sbjct: 60  HAHSPHAVAVENVFFARNSASALKLGQARGAVLAACGVHGAEVFGYEPTLVKKSLVGAGR 119

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQD 169
            +K Q+  M+  L+       +DA DALA+A+CH  H+       A Q+
Sbjct: 120 AEKSQVSFMVGQLLGVKPDWAEDAGDALALAICHLNHSRFLAAVAAGQN 168


>gi|157413524|ref|YP_001484390.1| Holliday junction resolvase [Prochlorococcus marinus str. MIT 9215]
 gi|167012681|sp|A8G5C3|RUVC_PROM2 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|157388099|gb|ABV50804.1| Crossover junction endodeoxyribonuclease RuvC [Prochlorococcus
           marinus str. MIT 9215]
          Length = 157

 Score =  187 bits (475), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 53/150 (35%), Positives = 85/150 (56%), Gaps = 2/150 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RIIGIDPGL R G+GI+++  +    +  G I +   +    RL ++++ L ++I +W 
Sbjct: 1   MRIIGIDPGLARVGYGIIEIENEKKILLDCGVIETGKDKKEEDRLYEIFKDLNELINHWN 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P  AAVE+ F  +    T+ + QAR + ++  A  +I VSEY+P  IK  + G G   KK
Sbjct: 61  PTSAAVEKFFFYRS-STTISVVQARGVIMMVLASKKIQVSEYSPAQIKLTIAGSGKASKK 119

Query: 125 QIHMMLK-MLMPESFFKGKDAADALAIAVC 153
           ++   +   L  +   K  D+ADALAIA+ 
Sbjct: 120 EVLDAVMFSLELKKPPKPDDSADALAIALT 149


>gi|74318232|ref|YP_315972.1| Holliday junction resolvase [Thiobacillus denitrificans ATCC 25259]
 gi|90146485|sp|Q3SGT0|RUVC_THIDA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|74057727|gb|AAZ98167.1| Crossover junction endodeoxyribonuclease RuvC [Thiobacillus
           denitrificans ATCC 25259]
          Length = 171

 Score =  187 bits (475), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 69/163 (42%), Positives = 96/163 (58%), Gaps = 1/163 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGLR TG+G+++  G  L +V+SG +      SL  RL  L+ G+ +VI  +R
Sbjct: 1   MRILGIDPGLRLTGFGLIEQTGQKLAYVASGVVK-SGEGSLPARLGILFGGINEVIATYR 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  AVE VFVN +  +TL LGQAR  AI +     + V+EY    IK+AV+G G   K 
Sbjct: 60  PDTCAVEIVFVNVNPQSTLLLGQARGAAICAAVSNDLTVAEYTALQIKQAVVGHGKAAKT 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
           Q+  M+K L+        DAADALA A+ HA+ +  G    A 
Sbjct: 120 QVQEMVKRLLALPIAPTADAADALACAITHAHGSRLGAQSTAG 162


>gi|269302405|gb|ACZ32505.1| crossover junction endodeoxyribonuclease RuvC [Chlamydophila
           pneumoniae LPCoLN]
          Length = 168

 Score =  187 bits (475), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 60/160 (37%), Positives = 86/160 (53%), Gaps = 4/160 (2%)

Query: 7   IIGIDPGLRRTGWGIVDVAGD-NLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           IIG+DPG    G+ I+ V     L   S G I       L  R   L+E L+ V+ + +P
Sbjct: 5   IIGVDPGTIVAGYAIIAVEQRYQLRPYSYGAIRLSSDMPLPMRYKTLFEQLSGVLDDTQP 64

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
               +E  FVNK+  +T+KL  AR I +L+ A   IP+ EYAPN  KKAV+G GH  K+Q
Sbjct: 65  NAMVLETQFVNKNPQSTMKLAMARGIVLLAAAQRDIPIFEYAPNVAKKAVVGKGHASKRQ 124

Query: 126 IHMMLKMLMPESF---FKGKDAADALAIAVCHAYHANSGY 162
           + +M+  ++          +D ADA A+A+CH + A S  
Sbjct: 125 VQVMVSKILNVPEVLHPSNEDIADAFALAICHTHVARSPL 164


>gi|154175236|ref|YP_001409235.1| Holliday junction resolvase [Campylobacter curvus 525.92]
 gi|166231592|sp|A7H193|RUVC_CAMC5 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|112803505|gb|EAU00849.1| crossover junction endodeoxyribonuclease RuvC [Campylobacter curvus
           525.92]
          Length = 157

 Score =  187 bits (475), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 48/154 (31%), Positives = 78/154 (50%), Gaps = 2/154 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++I+GIDPG R  G+ I++        + +G I       L +++ +L EGL  + KN +
Sbjct: 1   MKILGIDPGSRNCGYAIIEKNVRKTALIEAGLIKIKPNT-LQYQITELCEGLDVIFKNHK 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
            +E A+E +F   +    LKL Q R    L         +EY P  +KKAV G     K+
Sbjct: 60  FDEVAIEDIFFAYNPKTVLKLAQFRGALSLKILQLHGDFAEYTPLQVKKAVTGKAKAQKE 119

Query: 125 QIHMMLKMLMPES-FFKGKDAADALAIAVCHAYH 157
           Q+  M+K ++  +   K  D  DA+A+A+ HA +
Sbjct: 120 QVAFMVKKILGITKEIKPLDITDAIAVALTHANN 153


>gi|224827242|ref|ZP_03700336.1| crossover junction endodeoxyribonuclease RuvC [Lutiella nitroferrum
           2002]
 gi|224600531|gb|EEG06720.1| crossover junction endodeoxyribonuclease RuvC [Lutiella nitroferrum
           2002]
          Length = 176

 Score =  187 bits (475), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 58/138 (42%), Positives = 84/138 (60%)

Query: 4   SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           S RI+GIDPG R TG+G++DV G    +V+SG I +     LA R+  + +GL  V+  +
Sbjct: 2   SRRILGIDPGSRITGFGVIDVIGQQRHYVASGCIRTPQGAPLAERIKVIVDGLFGVVDTY 61

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RP EAAVEQVFVN +  ATL LGQAR   + +  L ++ V+EY    +K++V+G G   K
Sbjct: 62  RPGEAAVEQVFVNVNPAATLMLGQARGAVLAALVLKQLTVAEYTALQVKQSVVGHGKAPK 121

Query: 124 KQIHMMLKMLMPESFFKG 141
           +Q+  M+  L+  S    
Sbjct: 122 EQVQAMIVRLLNLSGTPQ 139


>gi|297566087|ref|YP_003685059.1| crossover junction endodeoxyribonuclease RuvC [Meiothermus silvanus
           DSM 9946]
 gi|296850536|gb|ADH63551.1| crossover junction endodeoxyribonuclease RuvC [Meiothermus silvanus
           DSM 9946]
          Length = 163

 Score =  187 bits (475), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 43/158 (27%), Positives = 82/158 (51%), Gaps = 1/158 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + ++GIDPG+   G G+V+ +G     + +  + +        R+ ++++ L  VI  +R
Sbjct: 1   MIVLGIDPGITNMGLGVVEQSGKAHRLLHARLVKTAHSDPAPQRVGEIFQNLRIVIAEFR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  AVE+ F  +    + K+G A     ++     + V  Y P  +K+A++G GH +K+
Sbjct: 61  PQAIAVEEQFFYRQNELSYKVGWAMGAVFIAANEWGLEVYGYGPMKVKQALVGYGHAEKE 120

Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHANSG 161
           Q+  M++ ++      K    ADALAIA+ H ++   G
Sbjct: 121 QVAFMVRAILGLKENPKPTHVADALAIALTHLFYLGRG 158


>gi|193212195|ref|YP_001998148.1| crossover junction endodeoxyribonuclease RuvC [Chlorobaculum parvum
           NCIB 8327]
 gi|238692617|sp|B3QLZ5|RUVC_CHLP8 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|193085672|gb|ACF10948.1| crossover junction endodeoxyribonuclease RuvC [Chlorobaculum parvum
           NCIB 8327]
          Length = 187

 Score =  187 bits (475), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 59/157 (37%), Positives = 83/157 (52%), Gaps = 1/157 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + ++G+DPG R+TG+G++  A   L  +  G I      +L  R+ QL  GL +VI N +
Sbjct: 1   MIVLGVDPGSRKTGYGVIAEAEGRLSVLGCGLIRPAASGTLHERIGQLCSGLEEVIANMK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           PE  A+E  FV ++  + L LGQ R   + +     +PV EYAP  IK AV G G   K+
Sbjct: 61  PEAVALETAFVGRNVRSALILGQVRGAVLATVIKLGLPVREYAPREIKLAVTGTGAARKE 120

Query: 125 QIHMML-KMLMPESFFKGKDAADALAIAVCHAYHANS 160
           Q+  ML ++L  E   K  D  DAL IA C      S
Sbjct: 121 QVASMLPRLLGLEEAPKPLDVTDALGIAYCDLSRGAS 157


>gi|126725531|ref|ZP_01741373.1| Holliday junction resolvase [Rhodobacterales bacterium HTCC2150]
 gi|126704735|gb|EBA03826.1| Holliday junction resolvase [Rhodobacterales bacterium HTCC2150]
          Length = 164

 Score =  187 bits (475), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 79/157 (50%), Positives = 108/157 (68%), Gaps = 1/157 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPGL   GWG++DV G  L  V++G   + V   L  RL  L++ L+ V++ + 
Sbjct: 1   MRVLGIDPGLGNLGWGVIDVDGSRLSHVANGVCKTKVG-DLGPRLLSLFDQLSAVVEKYA 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ AAVEQ FVNKD   +LKLGQAR IA+L PA A + + EYAPN +KK V+GVGH DKK
Sbjct: 60  PDTAAVEQTFVNKDGAGSLKLGQARGIAVLVPARAGLEIGEYAPNKVKKTVVGVGHADKK 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSG 161
           Q+  M+K+ +P     G DAADALAIA+CHA++  + 
Sbjct: 120 QVQHMVKIQLPGVELTGPDAADALAIAICHAHYGQNS 156


>gi|317488564|ref|ZP_07947109.1| crossover junction endodeoxyribonuclease RuvC [Eggerthella sp.
           1_3_56FAA]
 gi|316912306|gb|EFV33870.1| crossover junction endodeoxyribonuclease RuvC [Eggerthella sp.
           1_3_56FAA]
          Length = 192

 Score =  187 bits (475), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 48/144 (33%), Positives = 77/144 (53%), Gaps = 1/144 (0%)

Query: 1   MRKSIR-IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDV 59
           M ++ R I+GIDPGL  TGWGIV+  G  L   + G + +     LA RL +++E +  V
Sbjct: 1   MTRTERTILGIDPGLANTGWGIVEQCGPRLACTAYGCVSTAKDLPLAQRLRKIHEQMAAV 60

Query: 60  IKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVG 119
           I  + P    +E V+   +  +    GQAR  A+++ A   + V E++P+ IK AV+G G
Sbjct: 61  IARFEPACVGIETVWFGVNVQSAFATGQARGAALVACAERDLEVLEFSPSQIKLAVVGTG 120

Query: 120 HGDKKQIHMMLKMLMPESFFKGKD 143
             +K Q+  M++ L+        D
Sbjct: 121 SAEKDQVQYMVRQLLALEDVPRPD 144


>gi|160902929|ref|YP_001568510.1| crossover junction endodeoxyribonuclease RuvC [Petrotoga mobilis
           SJ95]
 gi|189046071|sp|A9BIM4|RUVC_PETMO RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|160360573|gb|ABX32187.1| crossover junction endodeoxyribonuclease RuvC [Petrotoga mobilis
           SJ95]
          Length = 163

 Score =  187 bits (475), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 42/124 (33%), Positives = 72/124 (58%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + I+GIDPG  R G+G+++  G+    +  G I +     L  RL  + E L ++I+ ++
Sbjct: 1   MVILGIDPGYGRIGYGVLEKKGNMFNLIDYGVIYTSKEDELPKRLLNIDEQLRNLIETYK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+E+AVE+++  K+    +++G+AR + +L      IP+ EY P  IK+AV G G  +K 
Sbjct: 61  PDESAVEKLYFFKNVATAIQVGEARGVILLCLEKENIPIYEYTPFQIKQAVTGYGRAEKG 120

Query: 125 QIHM 128
           QI  
Sbjct: 121 QIQR 124


>gi|189346019|ref|YP_001942548.1| crossover junction endodeoxyribonuclease RuvC [Chlorobium limicola
           DSM 245]
 gi|238692189|sp|B3EG36|RUVC_CHLL2 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|189340166|gb|ACD89569.1| crossover junction endodeoxyribonuclease RuvC [Chlorobium limicola
           DSM 245]
          Length = 190

 Score =  187 bits (475), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 52/150 (34%), Positives = 79/150 (52%), Gaps = 1/150 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + ++G+DPG   TG+G++         +  G I    R+S   R+ ++Y  L  VI  + 
Sbjct: 1   MVVLGVDPGSLHTGYGVIRYDNAGFHLLGCGVIRLHRRKSYFERIGEIYRELDSVIGGYA 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P   A+E VF+NK+  + LKLGQ R   I      R+ +SEYAP  +K AV G G   K+
Sbjct: 61  PVRLALETVFLNKNVQSALKLGQVRGAVIALAMNHRLELSEYAPREVKAAVTGRGAASKE 120

Query: 125 QIHMMLKMLMPESF-FKGKDAADALAIAVC 153
           Q+  M+  ++  +      D  DALAIA+C
Sbjct: 121 QVAFMVTRMLKITGNPATHDVTDALAIALC 150


>gi|148358829|ref|YP_001250036.1| crossover junction endodeoxyribonuclease RuvC [Legionella
           pneumophila str. Corby]
 gi|296106874|ref|YP_003618574.1| crossover junction endodeoxyribonuclease RuvC [Legionella
           pneumophila 2300/99 Alcoy]
 gi|166233201|sp|A5IBE0|RUVC_LEGPC RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|148280602|gb|ABQ54690.1| crossover junction endodeoxyribonuclease RuvC [Legionella
           pneumophila str. Corby]
 gi|295648775|gb|ADG24622.1| crossover junction endodeoxyribonuclease RuvC [Legionella
           pneumophila 2300/99 Alcoy]
          Length = 174

 Score =  186 bits (474), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 59/162 (36%), Positives = 102/162 (62%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++  +   + ++ SG I +     L+ +L Q+Y+G+ +++ ++ P 
Sbjct: 4   ILGIDPGSRVTGYGLIKESDRKIAYIDSGCIRTSNDAELSHKLLQIYDGICELMDHYSPT 63

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+EQ+F++ +  + LKLG AR +A+++ A  R  + EY+   IK++V+G G  +K Q+
Sbjct: 64  EVAIEQIFMHNNPNSALKLGHARGVAMVAAASHRAKICEYSAREIKQSVVGYGAAEKDQV 123

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
             M+  L+  +    KDAADALAIA+CH++  N     I S+
Sbjct: 124 SHMVVELLQLNRAPQKDAADALAIAICHSHMRNGLSKLIGSR 165


>gi|218563316|ref|YP_002345096.1| Holliday junction resolvase [Campylobacter jejuni subsp. jejuni
           NCTC 11168]
 gi|20978756|sp|Q9PLU8|RUVC_CAMJE RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|112361023|emb|CAL35824.1| crossover junction endodeoxyribonuclease [Campylobacter jejuni
           subsp. jejuni NCTC 11168]
          Length = 160

 Score =  186 bits (474), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 50/153 (32%), Positives = 77/153 (50%), Gaps = 2/153 (1%)

Query: 4   SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +++I+GIDPG R  G+ I++        + +G I       L +++ +L EGL  + KN 
Sbjct: 2   NLKILGIDPGSRNCGYAIIEADKGKNILIEAGLIKIKPST-LQYQITELCEGLDLIFKNH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
             +E A+E +F   +    LKL Q R    L         +EY P  +KKAV G     K
Sbjct: 61  SFDEVAIEDIFFAYNPKTVLKLAQFRGALSLKILQIHGDFAEYTPLQVKKAVTGKAKATK 120

Query: 124 KQIHMMLKMLMPESF-FKGKDAADALAIAVCHA 155
           +Q+  M+K L+  S   K  D  DA+A+A+ HA
Sbjct: 121 EQVAFMVKRLLGLSKDIKPLDITDAIAVALTHA 153


>gi|220935404|ref|YP_002514303.1| Crossover junction endodeoxyribonuclease [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|219996714|gb|ACL73316.1| Crossover junction endodeoxyribonuclease [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 179

 Score =  186 bits (474), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 66/156 (42%), Positives = 99/156 (63%), Gaps = 1/156 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPG   TG+GIVD  G     V SG I     + L  RL ++++ ++ +++  R
Sbjct: 1   MRILGIDPGSLVTGFGIVDSDGRRSVHVHSGCIR-VKGEDLVVRLGRIFDEVSLLVETHR 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           PE  A+EQVFV+++  + LKLGQAR  AI +   A +PVSEY+P +IK+AV+G G   K+
Sbjct: 60  PEVLAIEQVFVSRNPSSALKLGQARGAAICAGVRAGLPVSEYSPTSIKQAVVGTGAASKE 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           Q+  M+ M++        D ADALA+A+CHA+   +
Sbjct: 120 QVQHMITMILSLKDAPAADQADALAVALCHAHTQAT 155


>gi|308183031|ref|YP_003927158.1| Holliday junction resolvase [Helicobacter pylori PeCan4]
 gi|308065216|gb|ADO07108.1| Holliday junction resolvase [Helicobacter pylori PeCan4]
          Length = 157

 Score =  186 bits (474), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 48/154 (31%), Positives = 77/154 (50%), Gaps = 2/154 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + I+GIDPG R+ G+ I+    + L  +++G I       L  ++  L E L  ++  + 
Sbjct: 1   MHILGIDPGSRKCGYAIISHTSNKLSLITAGFIN-ITTTRLQEQILDLIEALDCLLDRYE 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
             E A+E +F   +  + +KL Q R    L         SEY P  +KKA+ G G   K+
Sbjct: 60  VNEVAIEDIFFGYNPKSVIKLAQFRGALSLKILERIGNFSEYTPLQVKKALTGNGKAAKE 119

Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYH 157
           Q+  M+K L+   S  K  D +DA+A+A+ HA  
Sbjct: 120 QVAFMVKRLLNITSEIKPLDISDAIAVAITHAQR 153


>gi|254526917|ref|ZP_05138969.1| crossover junction endodeoxyribonuclease RuvC [Prochlorococcus
           marinus str. MIT 9202]
 gi|221538341|gb|EEE40794.1| crossover junction endodeoxyribonuclease RuvC [Prochlorococcus
           marinus str. MIT 9202]
          Length = 157

 Score =  186 bits (474), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 53/150 (35%), Positives = 85/150 (56%), Gaps = 2/150 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RIIGIDPGL R G+GI+++  +    +  G I +   +    RL ++++ L ++I +W 
Sbjct: 1   MRIIGIDPGLARVGYGIIEIENEKKILLDCGVIETGKDKKEEDRLYEIFKDLNELINHWN 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P  AAVE+ F  +    T+ + QAR + ++  A  +I VSEY+P  IK  + G G   KK
Sbjct: 61  PTSAAVEKFFFYRS-STTISVVQARGVIMMVLASKKIHVSEYSPAQIKLTIAGSGKASKK 119

Query: 125 QIHMMLKM-LMPESFFKGKDAADALAIAVC 153
           ++   +   L  +   K  D+ADALAIA+ 
Sbjct: 120 EVLDAVMYSLELKKPPKPDDSADALAIALT 149


>gi|57236914|ref|YP_179867.1| Holliday junction resolvase [Campylobacter jejuni RM1221]
 gi|73621850|sp|Q5HS68|RUVC_CAMJR RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|57165718|gb|AAW34497.1| crossover junction endodeoxyribonuclease RuvC [Campylobacter jejuni
           RM1221]
 gi|284926914|gb|ADC29266.1| crossover junction endodeoxyribonuclease [Campylobacter jejuni
           subsp. jejuni IA3902]
          Length = 160

 Score =  186 bits (474), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 50/153 (32%), Positives = 77/153 (50%), Gaps = 2/153 (1%)

Query: 4   SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +++I+GIDPG R  G+ I++        + +G I       L +++ +L EGL  + KN 
Sbjct: 2   NLKILGIDPGSRNCGYAIIEANKGKNILIEAGLIKIKPST-LQYQITELCEGLDLIFKNH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
             +E A+E +F   +    LKL Q R    L         +EY P  +KKAV G     K
Sbjct: 61  SFDEVAIEDIFFAYNPKTVLKLAQFRGALSLKILQIHGDFAEYTPLQVKKAVTGKAKATK 120

Query: 124 KQIHMMLKMLMPESF-FKGKDAADALAIAVCHA 155
           +Q+  M+K L+  S   K  D  DA+A+A+ HA
Sbjct: 121 EQVAFMVKRLLGLSKDIKPLDITDAIAVALTHA 153


>gi|217967995|ref|YP_002353501.1| crossover junction endodeoxyribonuclease RuvC [Dictyoglomus
           turgidum DSM 6724]
 gi|226725468|sp|B8E2P3|RUVC_DICTD RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|217337094|gb|ACK42887.1| crossover junction endodeoxyribonuclease RuvC [Dictyoglomus
           turgidum DSM 6724]
          Length = 158

 Score =  186 bits (474), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 43/153 (28%), Positives = 80/153 (52%), Gaps = 1/153 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + +IG DPG   TG+GI++   D +  +  G + +     +  RL  L++ ++ ++  + 
Sbjct: 1   MVVIGFDPGTAITGYGILNKGEDGISIIEYGALTTPSGWGIGRRLNYLFDQVSSLLDLYN 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+   +E +F NK+    + +GQA+ + IL+    +  +S   P  +K +V+G G   K 
Sbjct: 61  PDVVVMENIFFNKNIKTAINIGQAQGVIILAAEQHQKEISILTPLEVKLSVVGYGRATKN 120

Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAY 156
           QI  M+K ++      K  D ADALA+ + + Y
Sbjct: 121 QIQYMVKEILKLKDIPKPDDVADALALCISYIY 153


>gi|296274671|ref|YP_003657302.1| crossover junction endodeoxyribonuclease RuvC [Arcobacter
           nitrofigilis DSM 7299]
 gi|296098845|gb|ADG94795.1| crossover junction endodeoxyribonuclease RuvC [Arcobacter
           nitrofigilis DSM 7299]
          Length = 157

 Score =  186 bits (474), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 51/158 (32%), Positives = 80/158 (50%), Gaps = 4/158 (2%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M+K  +I+GIDPG    G+ +++   +NL    +G I     + L  ++ ++ EGL  + 
Sbjct: 1   MKK--KILGIDPGTINCGYAVIEKERNNLRLCEAGLIK-IKSKILQEQIVEMVEGLDLIF 57

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
           +N    E A+E +F   +  + +KL Q R    L         SEY P  +KKAV G G 
Sbjct: 58  ENHEINEVAIEDMFYAFNPKSVIKLAQFRGAISLKVLQKFGNFSEYTPLQVKKAVTGNGK 117

Query: 121 GDKKQIHMMLKMLMP-ESFFKGKDAADALAIAVCHAYH 157
             K+Q+  M+K L+  +   K  D  DA+AIA+ HA  
Sbjct: 118 AAKEQVAFMVKRLLGIKKEIKPLDITDAIAIALTHAQR 155


>gi|283956178|ref|ZP_06373663.1| crossover junction endodeoxyribonuclease RuvC [Campylobacter jejuni
           subsp. jejuni 1336]
 gi|283792332|gb|EFC31116.1| crossover junction endodeoxyribonuclease RuvC [Campylobacter jejuni
           subsp. jejuni 1336]
          Length = 158

 Score =  186 bits (474), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 49/152 (32%), Positives = 77/152 (50%), Gaps = 2/152 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++I+GIDPG +  G+ I++ +      + +G I       L +++ +L EGL  + KN  
Sbjct: 1   MKILGIDPGSKNCGYAIIEASKGKNILIEAGLIKIKPST-LQYQITELCEGLDLIFKNHS 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
            +E A+E +F   +    LKL Q R    L         +EY P  +KKAV G     K+
Sbjct: 60  FDEVAIEDIFFAYNPKTVLKLAQFRGALSLKILQIHGDFAEYTPLQVKKAVTGKAKATKE 119

Query: 125 QIHMMLKMLMPESF-FKGKDAADALAIAVCHA 155
           Q+  M+K L+  S   K  D  DA+A+A+ HA
Sbjct: 120 QVAFMVKRLLGLSKDIKPLDITDAIAVALTHA 151


>gi|255020123|ref|ZP_05292193.1| Crossover junction endodeoxyribonuclease ruvC [Acidithiobacillus
           caldus ATCC 51756]
 gi|254970416|gb|EET27908.1| Crossover junction endodeoxyribonuclease ruvC [Acidithiobacillus
           caldus ATCC 51756]
          Length = 166

 Score =  186 bits (473), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 68/157 (43%), Positives = 100/157 (63%), Gaps = 2/157 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGD-NLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +RIIGIDPG  RTG+G+++V G   L  V  G +     +    R+  ++ GL +V+  +
Sbjct: 1   MRIIGIDPGSLRTGYGVIEVDGRGRLRSVGYGCL-MVAGRPFLERIGAIHAGLLEVLAEF 59

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RP+EAA+E VF+ ++A + LKLGQAR  A+++     +PV EY    IKKA +G GH  K
Sbjct: 60  RPDEAAIEAVFMARNADSALKLGQARGAALVALLQEGLPVHEYTALQIKKAAVGGGHAAK 119

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           +Q+  M+++L+  S     DAADALA AVCHA+HA +
Sbjct: 120 EQVQHMVRILLSLSEAPQADAADALACAVCHAHHAGT 156


>gi|126696498|ref|YP_001091384.1| Holliday junction resolvase [Prochlorococcus marinus str. MIT 9301]
 gi|166233280|sp|A3PDF8|RUVC_PROM0 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|126543541|gb|ABO17783.1| Crossover junction endodeoxyribonuclease RuvC [Prochlorococcus
           marinus str. MIT 9301]
          Length = 157

 Score =  186 bits (473), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 54/150 (36%), Positives = 83/150 (55%), Gaps = 2/150 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RIIGIDPGL R G+GI+++  +    +  G I +   +    RL ++++ L ++I +W 
Sbjct: 1   MRIIGIDPGLARVGYGIIEIENERKILLDCGVIETGKDKKEEDRLYEIFQDLNELINHWN 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P  AAVE+ F  +    T+ + QAR + ++  A  +I VSEY+P  IK  + G G   KK
Sbjct: 61  PTSAAVEKFFFYRS-STTISVVQARGVIMMVLASKKINVSEYSPAQIKLTIAGSGKASKK 119

Query: 125 QIHMMLK-MLMPESFFKGKDAADALAIAVC 153
            I   +   L      K  D+ADALAIA+ 
Sbjct: 120 DILDAVMYNLDLNKPPKPDDSADALAIALT 149


>gi|313892055|ref|ZP_07825653.1| crossover junction endodeoxyribonuclease RuvC [Dialister
           microaerophilus UPII 345-E]
 gi|313119507|gb|EFR42701.1| crossover junction endodeoxyribonuclease RuvC [Dialister
           microaerophilus UPII 345-E]
          Length = 164

 Score =  186 bits (473), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 42/134 (31%), Positives = 76/134 (56%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R +GIDPG  R G+GIVD  G+++  V  G I +    SL+ RL  ++ G+ ++I+ ++
Sbjct: 1   MRALGIDPGTGRCGFGIVDKKGNSISAVDYGVIETTKEYSLSERLNIIFTGVNELIEIYK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+   +E ++ NK+    + + QAR +  L+    +I + E  P  +K+ V+G G  +KK
Sbjct: 61  PDVMGIETLYFNKNITTAISVAQARGVIQLAGFQKKIKIFECTPLQVKQQVVGYGRAEKK 120

Query: 125 QIHMMLKMLMPESF 138
           Q+  M+  +M    
Sbjct: 121 QVIEMIMQIMNIKK 134


>gi|83816429|ref|YP_446766.1| Holliday junction resolvase [Salinibacter ruber DSM 13855]
 gi|123726125|sp|Q2RZ65|RUVC_SALRD RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|83757823|gb|ABC45936.1| crossover junction endodeoxyribonuclease RuvC [Salinibacter ruber
           DSM 13855]
          Length = 179

 Score =  186 bits (473), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 58/154 (37%), Positives = 90/154 (58%), Gaps = 1/154 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + I+G+DPG R TG+G+VD +G +   V++ TI          RL Q+Y+ L DVI    
Sbjct: 1   MIILGVDPGSRATGYGLVDPSGGDEHLVAADTIRLADTDDHPTRLKQIYDALVDVIDAHG 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+E AVE     ++  + LKLG+A+A A+++     +PV++Y P  +KK+V G G+  KK
Sbjct: 61  PDEFAVEMPVYGQNPQSMLKLGRAQAAAMMAALNRDLPVAQYTPKEVKKSVTGNGNASKK 120

Query: 125 QIHMMLKMLMPESFFKGK-DAADALAIAVCHAYH 157
           Q+  M++ ++         D ADALAIA+CH   
Sbjct: 121 QVGFMIESILSAREQTFAHDTADALAIALCHGNR 154


>gi|46580663|ref|YP_011471.1| Holliday junction resolvase [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|81566319|sp|Q729U1|RUVC_DESVH RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|46450082|gb|AAS96731.1| crossover junction endodeoxyribonuclease RuvC [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|311234391|gb|ADP87245.1| crossover junction endodeoxyribonuclease RuvC [Desulfovibrio
           vulgaris RCH1]
          Length = 166

 Score =  186 bits (473), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 63/159 (39%), Positives = 86/159 (54%), Gaps = 1/159 (0%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M  S+ +IGIDPG + TGWGIV  A   L  V  G I        A RL  LY  L DV+
Sbjct: 1   MAASVTVIGIDPGSQCTGWGIVREASGVLTLVDCGAIR-PKGGDFAARLGDLYRQLADVV 59

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
           +   P+EAAVE V   ++    LKLGQAR + + + A   +PV +Y P+ IKKA++G G 
Sbjct: 60  RAHTPDEAAVEDVHAAQNVATALKLGQARGVVVAACAAHGVPVIDYRPSVIKKALVGTGR 119

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHAN 159
            +K+Q+  M+  ++        D  DALA A+CH     
Sbjct: 120 AEKEQVGYMVGQVLGVRPDWKLDTGDALAAAICHLNQRR 158


>gi|85703561|ref|ZP_01034665.1| Holliday junction resolvase [Roseovarius sp. 217]
 gi|85672489|gb|EAQ27346.1| Holliday junction resolvase [Roseovarius sp. 217]
          Length = 168

 Score =  186 bits (473), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 84/157 (53%), Positives = 109/157 (69%), Gaps = 1/157 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPGLR  GWG+++V G  L  V++G I       LA RL  LYE LTD++  + 
Sbjct: 1   MRVLGIDPGLRNLGWGVIEVEGSRLSHVANG-ICHSTGPDLAARLLSLYEQLTDILHRFD 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ AAVEQ FVNKD   TLKLGQAR IA+L PA   + V EY+PNT+KK V+GVGH  K+
Sbjct: 60  PQAAAVEQTFVNKDGAGTLKLGQARGIALLVPAQYGLTVGEYSPNTVKKTVVGVGHAAKE 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSG 161
           Q+  M+K+ +P     G DAADALAIA+CHA+H+ S 
Sbjct: 120 QVAHMVKVQLPGVLLAGPDAADALAIAICHAHHSRSS 156


>gi|330991871|ref|ZP_08315820.1| Crossover junction endodeoxyribonuclease ruvC [Gluconacetobacter
           sp. SXCC-1]
 gi|329760892|gb|EGG77387.1| Crossover junction endodeoxyribonuclease ruvC [Gluconacetobacter
           sp. SXCC-1]
          Length = 168

 Score =  186 bits (473), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 72/157 (45%), Positives = 107/157 (68%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGLR TGWG++   G+ L  V+ G I +     +  RL  L++ L ++ +N+ 
Sbjct: 2   VRILGIDPGLRFTGWGVITAQGNRLTHVADGVIATDSALGVPERLRHLHDALLELARNFA 61

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+EAAVE+ +VN++  ATLKLG AR + +L P L  IPV+EY   T+K+AV+G G   K+
Sbjct: 62  PDEAAVEETYVNRNGSATLKLGYARGVGLLVPMLLDIPVAEYGAKTVKRAVVGTGAATKE 121

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSG 161
           Q+ MM++ ++P +  K  DAADALA+A+CHA+H  S 
Sbjct: 122 QVSMMVRRILPTALLKRADAADALAVAICHAHHRTSA 158


>gi|54297205|ref|YP_123574.1| Holliday junction resolvase [Legionella pneumophila str. Paris]
 gi|81601888|sp|Q5X5S0|RUVC_LEGPA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|53750990|emb|CAH12401.1| Crossover junction endodeoxyribonuclease ruvC [Legionella
           pneumophila str. Paris]
          Length = 174

 Score =  186 bits (473), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 59/162 (36%), Positives = 102/162 (62%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++  +   + ++ SG I +     L+ +L Q+Y+G+ +++ ++ P 
Sbjct: 4   ILGIDPGSRVTGYGLIKESDRKIAYIDSGCIRTSNDVELSHKLLQIYDGICELMDHYSPT 63

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+EQ+F++ +  + LKLG AR +A+++ A  R  + EY+   IK++V+G G  +K Q+
Sbjct: 64  EVAIEQIFMHNNPNSALKLGHARGVAMVAAASHRAKICEYSAREIKQSVVGYGAAEKDQV 123

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
             M+  L+  +    KDAADALAIA+CH++  N     I S+
Sbjct: 124 SHMVVELLQLNRAPQKDAADALAIAICHSHMRNGLSKLIGSR 165


>gi|296126684|ref|YP_003633936.1| crossover junction endodeoxyribonuclease RuvC [Brachyspira
           murdochii DSM 12563]
 gi|296018500|gb|ADG71737.1| crossover junction endodeoxyribonuclease RuvC [Brachyspira
           murdochii DSM 12563]
          Length = 157

 Score =  185 bits (472), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 50/153 (32%), Positives = 82/153 (53%), Gaps = 1/153 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +  +GIDPG  R G+  ++        V+SG I +   Q+   RL  +Y  L ++IK + 
Sbjct: 1   MITLGIDPGFARCGYAFIEAKNSAYKIVNSGLIETFSNQNYNQRLSFIYTQLDELIKKYS 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P +AA+E++F +K+    +K+ +AR + IL+  L  I  +EY P  +K  + G G+ +K 
Sbjct: 61  PSDAAIEELFFSKNTKTAIKVAEARGVIILALTLNNIDFTEYKPKEVKSQITGNGNANKD 120

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYH 157
            +  M+  L   S     D ADA+AIA+ HA  
Sbjct: 121 AMMKMVN-LFTGSNIIQDDTADAVAIALAHASR 152


>gi|311894865|dbj|BAJ27273.1| putative crossover junction endodeoxyribonuclease RuvC
           [Kitasatospora setae KM-6054]
          Length = 211

 Score =  185 bits (472), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 54/165 (32%), Positives = 89/165 (53%), Gaps = 2/165 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G G+V+   G  L  +  G + +     +  RL  + +GL   +  +
Sbjct: 1   MRVLGVDPGLTRCGVGVVEGLPGRRLDMLGVGVVRTPSDDEIGPRLLAIEQGLESWLDRY 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +PE  AVE+VF   +    +   QA A+A+L      IPV+ + P+ +K AV G G  DK
Sbjct: 61  QPELVAVERVFAQHNVRTVMGTAQASAVAVLCATRRGIPVTLHTPSEVKAAVTGSGRADK 120

Query: 124 KQIHMMLKMLM-PESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
            Q+  M+  ++  ++  K  DAADALA+A+CH +   +     A+
Sbjct: 121 AQVTAMVTRILRLDAPPKPADAADALALAICHIWRGGTTNRLTAA 165


>gi|317154310|ref|YP_004122358.1| crossover junction endodeoxyribonuclease RuvC [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316944561|gb|ADU63612.1| crossover junction endodeoxyribonuclease RuvC [Desulfovibrio
           aespoeensis Aspo-2]
          Length = 168

 Score =  185 bits (472), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 61/159 (38%), Positives = 91/159 (57%), Gaps = 1/159 (0%)

Query: 2   RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           + S+ +IG+DPG R TG+GIV         V +GTI +   + +  RL  +Y  L ++I 
Sbjct: 3   QDSVVVIGLDPGSRVTGYGIVRECSGQAELVVTGTIRTPAGKDMGTRLGVIYTRLAELIT 62

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
              P EAA+E VFV K+  + LKLGQAR  A+ + A   + V+EY P+ +KK ++GVG  
Sbjct: 63  THCPAEAAIENVFVAKNPSSALKLGQARGAAMAACATHGLSVAEYEPSKVKKNLVGVGGA 122

Query: 122 DKKQIHMML-KMLMPESFFKGKDAADALAIAVCHAYHAN 159
            K Q+  M+ + L        +DA+DALA+A+CH     
Sbjct: 123 PKDQVAFMVARCLGIRKPDWPEDASDALAVAICHLNERR 161


>gi|317057208|ref|YP_004105675.1| crossover junction endodeoxyribonuclease RuvC [Ruminococcus albus
           7]
 gi|315449477|gb|ADU23041.1| crossover junction endodeoxyribonuclease RuvC [Ruminococcus albus
           7]
          Length = 169

 Score =  185 bits (472), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 42/135 (31%), Positives = 74/135 (54%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPG    G+G V+        + +GTI +        RL  +Y  +  +I  +R
Sbjct: 1   MRIMGIDPGYGIVGYGFVEYDRGRFTPIKAGTIKTPSDMDFMKRLRVIYLDMQKLIGYYR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+E AVE++F N +    + + QAR + +L   +  +PV EY P  +K +++G G+ +KK
Sbjct: 61  PDEVAVEKLFFNTNITTGIDVAQARGVTLLPAVMNELPVYEYTPLQVKSSIVGYGYAEKK 120

Query: 125 QIHMMLKMLMPESFF 139
           Q+  M++ ++  S  
Sbjct: 121 QVQEMVRSMLHLSEI 135


>gi|167006264|ref|ZP_02272022.1| Holliday junction resolvase [Campylobacter jejuni subsp. jejuni
           81-176]
          Length = 158

 Score =  185 bits (471), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 50/152 (32%), Positives = 76/152 (50%), Gaps = 2/152 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++I+GIDPG R  G+ I++        + +G I       L +++ +L EGL  + KN  
Sbjct: 1   MKILGIDPGSRNCGYAIMEANKGKNILIEAGLIKIKPST-LQYQITELCEGLDLIFKNHS 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
            +E A+E +F   +    LKL Q R    L         +EY P  +KKAV G     K+
Sbjct: 60  FDEVAIEDIFFAYNPKTVLKLAQFRGALSLKILQIHGDFAEYTPLQVKKAVTGKAKATKE 119

Query: 125 QIHMMLKMLMPESF-FKGKDAADALAIAVCHA 155
           Q+  M+K L+  S   K  D  DA+A+A+ HA
Sbjct: 120 QVAFMVKRLLGLSKDIKPLDITDAIAVALTHA 151


>gi|325678948|ref|ZP_08158546.1| crossover junction endodeoxyribonuclease RuvC [Ruminococcus albus
           8]
 gi|324109452|gb|EGC03670.1| crossover junction endodeoxyribonuclease RuvC [Ruminococcus albus
           8]
          Length = 170

 Score =  185 bits (471), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 40/135 (29%), Positives = 74/135 (54%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPG    G+G V+        V  GTI +        RL  +Y  +  +I+++R
Sbjct: 1   MRIMGIDPGYGIVGYGFVEYDHGKFTPVKVGTITTPSDMEFYKRLRVIYLDMQKLIEHYR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+E AVE++F N +    + + QAR + +L   +  +P+ +Y P  +K ++ G G+ +KK
Sbjct: 61  PDEIAVEKLFFNTNITTGIDVAQARGVTLLPAVMMNLPIYDYTPLQVKSSITGYGYAEKK 120

Query: 125 QIHMMLKMLMPESFF 139
           Q+  M++ ++  +  
Sbjct: 121 QVQEMVRSMLHLANI 135


>gi|110833612|ref|YP_692471.1| endonuclease RuvC [Alcanivorax borkumensis SK2]
 gi|123149640|sp|Q0VRJ9|RUVC_ALCBS RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|110646723|emb|CAL16199.1| endonuclease RuvC [Alcanivorax borkumensis SK2]
          Length = 172

 Score =  185 bits (471), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 68/162 (41%), Positives = 104/162 (64%), Gaps = 2/162 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG RRTG+G+VDV G+    V+ GTI +  +  +  RL +++ G+  V+K + P 
Sbjct: 4   ILGIDPGSRRTGYGVVDVVGNRSRAVAFGTITTSHK-EIPPRLGEIFAGIDQVVKEYGPA 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E ++E+VF+ ++A + LKLGQAR  AI +   A +PV EY+   +K+AV+G G  +K Q+
Sbjct: 63  EVSIEKVFMARNADSALKLGQARGAAIAAVMQACVPVFEYSARQVKQAVVGKGGAEKNQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
             M+K L+       +DAADALAIA+CHA+   S   ++A  
Sbjct: 123 GEMVKYLLKLDQRPQEDAADALAIALCHAHMRLS-LARMAGA 163


>gi|154498070|ref|ZP_02036448.1| hypothetical protein BACCAP_02051 [Bacteroides capillosus ATCC
           29799]
 gi|150273060|gb|EDN00217.1| hypothetical protein BACCAP_02051 [Bacteroides capillosus ATCC
           29799]
          Length = 186

 Score =  185 bits (471), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 39/137 (28%), Positives = 76/137 (55%)

Query: 4   SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           ++ I+GIDPG    G+G+++ A      +  G I +     L  RL Q+ + +  +++ +
Sbjct: 7   TMIILGIDPGFAIVGFGVLEAAPGRQRLIRCGAITTPAGLPLPARLLQISDDMATLLRQF 66

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +P+  AVE++F N++    + + QAR + +     A +P+ EY+P+ +K+AV+G G  +K
Sbjct: 67  KPDAMAVEELFFNQNVTTGISVAQARGVILTEAERACVPIFEYSPSQVKQAVVGYGKAEK 126

Query: 124 KQIHMMLKMLMPESFFK 140
           +Q+  M K L+      
Sbjct: 127 RQVMDMTKRLLGLKDVP 143


>gi|77163676|ref|YP_342201.1| crossover junction endodeoxyribonuclease RuvC [Nitrosococcus oceani
           ATCC 19707]
 gi|254435564|ref|ZP_05049071.1| crossover junction endodeoxyribonuclease RuvC [Nitrosococcus oceani
           AFC27]
 gi|97274860|sp|Q3JES5|RUVC_NITOC RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|76881990|gb|ABA56671.1| Holliday junction endonuclease RuvC [Nitrosococcus oceani ATCC
           19707]
 gi|207088675|gb|EDZ65947.1| crossover junction endodeoxyribonuclease RuvC [Nitrosococcus oceani
           AFC27]
          Length = 174

 Score =  185 bits (471), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 52/135 (38%), Positives = 86/135 (63%), Gaps = 1/135 (0%)

Query: 6   RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           RI+GIDPG R TG+G+++       ++++G I       LA RL Q+++G+T +I+ + P
Sbjct: 3   RILGIDPGSRITGYGLIETNNKKTVYIAAGCIR-AGEGGLAERLGQIFQGITGIIQAYHP 61

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
           +E AVEQVF++++  + LKLGQAR  AI +   A +P+ EY P+ +K+AV+G G   K Q
Sbjct: 62  DEVAVEQVFMHQNPGSALKLGQARGAAICAAVNAVLPIFEYTPSQVKQAVVGRGDAAKSQ 121

Query: 126 IHMMLKMLMPESFFK 140
           +  M+++L+      
Sbjct: 122 VQYMIRLLLKLPAEP 136


>gi|315639362|ref|ZP_07894524.1| crossover junction endoribonuclease subunit C [Campylobacter
           upsaliensis JV21]
 gi|315480688|gb|EFU71330.1| crossover junction endoribonuclease subunit C [Campylobacter
           upsaliensis JV21]
          Length = 159

 Score =  185 bits (471), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 51/154 (33%), Positives = 78/154 (50%), Gaps = 2/154 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++I+GIDPG R  G+ I++V       + +G I       L +++ +L EGL  + K+  
Sbjct: 1   MKILGIDPGSRFCGYAILEVIKGKNTLIEAGLIKIKPST-LQYQITELCEGLDLIFKHHH 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
            +E A+E +F   +  + LKL Q R    L         +EY P  IKK + G     K+
Sbjct: 60  FDEVAIEDIFFAYNPQSVLKLAQFRGALSLKILQLHGEFAEYTPLQIKKTITGKAKASKE 119

Query: 125 QIHMMLKMLMPESF-FKGKDAADALAIAVCHAYH 157
           Q+  M+K L+  S   K  D  DA+AIA+ HA H
Sbjct: 120 QVAFMVKRLLGISKDIKPLDITDAIAIALTHAAH 153


>gi|83647603|ref|YP_436038.1| crossover junction endodeoxyribonuclease RuvC [Hahella chejuensis
           KCTC 2396]
 gi|123767362|sp|Q2SCL1|RUVC_HAHCH RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|83635646|gb|ABC31613.1| crossover junction endodeoxyribonuclease RuvC [Hahella chejuensis
           KCTC 2396]
          Length = 172

 Score =  185 bits (471), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 68/163 (41%), Positives = 107/163 (65%), Gaps = 2/163 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++++GIDPG R TG+G+V+  G    +V+SG I     ++LA RL  +Y G+T V+  + 
Sbjct: 2   LKVLGIDPGSRFTGYGVVEWGGGKPRYVASGCIR-VTGETLAERLRCIYLGVTQVVSMYA 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+EAA+EQVF+ ++A + LKLGQAR +AIL+ A   + V+EY+   +K++V+G G+ +K 
Sbjct: 61  PDEAAIEQVFMARNADSALKLGQARGVAILAMAEQGLQVAEYSAKKVKQSVVGKGNAEKW 120

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
           Q+  M++ ++        DAADALAIAVCH +   S   +I S
Sbjct: 121 QVQHMMQAMLDLQAKPQADAADALAIAVCHLHTQQS-LMRIGS 162


>gi|62263337|gb|AAX78153.1| unknown protein [synthetic construct]
          Length = 213

 Score =  185 bits (470), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 66/165 (40%), Positives = 105/165 (63%), Gaps = 2/165 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + I+GIDPG R TG+G++ V  + + +V+SG I      +   RL Q+ +G+T +I  + 
Sbjct: 34  MVILGIDPGSRITGFGVIKVQDNKIYYVASGCIR-ITEITTPKRLKQIADGITQIINIYA 92

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P EAA+EQ+F+ ++ +  +KLGQAR +A+ + A+  + VSEY+   IK+AV+G G   K 
Sbjct: 93  PTEAAIEQIFMFQNPMGAIKLGQARGVAMCTLAINNLEVSEYSAKQIKQAVVGTGGAAKS 152

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQD 169
           Q+  M++ L+  S    +DAADALAIA+CH YH++    KI+   
Sbjct: 153 QVQHMVQSLLGLSKKPPEDAADALAIAICH-YHSSKSLAKISGAS 196


>gi|330836552|ref|YP_004411193.1| Crossover junction endodeoxyribonuclease ruvC [Spirochaeta
           coccoides DSM 17374]
 gi|329748455|gb|AEC01811.1| Crossover junction endodeoxyribonuclease ruvC [Spirochaeta
           coccoides DSM 17374]
          Length = 184

 Score =  185 bits (470), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 48/160 (30%), Positives = 83/160 (51%), Gaps = 1/160 (0%)

Query: 2   RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
             S+RI+GIDPGL +TGWG+VD+       VS G + +   Q L  R+  +   +  +  
Sbjct: 19  TNSMRILGIDPGLAQTGWGVVDIIDQRYRPVSFGVVTTATSQDLGLRIHYIASNIGRLAA 78

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
                  A+E VF  K+  + + + +     +   A   + V  ++P  IK AV G G  
Sbjct: 79  EHEVVMVAMEDVFFTKNISSAIPVAKVIGAIMHQLAGQGLDVKMFSPPQIKTAVTGYGSA 138

Query: 122 DKKQIHMMLKMLM-PESFFKGKDAADALAIAVCHAYHANS 160
           +K Q+  M+++++  +   K   +ADALA+AVC A ++++
Sbjct: 139 EKHQVQEMMRLMLDLKEIPKPNHSADALAVAVCCASYSST 178


>gi|302384292|ref|YP_003820115.1| crossover junction endodeoxyribonuclease RuvC [Brevundimonas
           subvibrioides ATCC 15264]
 gi|302194920|gb|ADL02492.1| crossover junction endodeoxyribonuclease RuvC [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 179

 Score =  185 bits (470), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 65/141 (46%), Positives = 89/141 (63%), Gaps = 6/141 (4%)

Query: 1   MRKSI------RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYE 54
           M   +      RI+G+DPGLRRTGWG+V   G  L +++ G +       L+ RL  L E
Sbjct: 1   MTNVMIQNGPTRILGLDPGLRRTGWGVVVAEGSRLRWIAHGVVTPPETAPLSERLLWLLE 60

Query: 55  GLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKA 114
            + +V      +EAA+E+VFVN +  +TLKLG ARA  +L+PA A + V+EY+PN IKKA
Sbjct: 61  KVGEVCAAHDCDEAAIEEVFVNVNPSSTLKLGHARAAVMLAPARAGLSVAEYSPNLIKKA 120

Query: 115 VIGVGHGDKKQIHMMLKMLMP 135
           V+G GH DK QI  M+K L+P
Sbjct: 121 VVGAGHADKTQIAFMVKRLLP 141


>gi|206889628|ref|YP_002248503.1| crossover junction endodeoxyribonuclease RuvC [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|226698768|sp|B5YJT8|RUVC_THEYD RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|206741566|gb|ACI20623.1| crossover junction endodeoxyribonuclease RuvC [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 156

 Score =  185 bits (470), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 61/156 (39%), Positives = 86/156 (55%), Gaps = 2/156 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + +IGIDPG R  G+GIVD     +  + + TI      SL +RL  +YE L  +++ + 
Sbjct: 1   MTVIGIDPGSRHFGYGIVDAK--QMKLIHANTINLSHDISLPYRLKSIYEILLSMVEKYS 58

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+E AVE++FV K   ++  LG ARAIA L  A   IPV EY+   IKKA+ G G   K 
Sbjct: 59  PDEMAVEKIFVGKKITSSFVLGYARAIAFLVAAQKEIPVYEYSSTEIKKALTGYGRAHKV 118

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           Q+  M+   +        D ADALA+A+CH     +
Sbjct: 119 QVKSMVYNFLHIDKKISYDCADALAVAICHINSKTN 154


>gi|54113895|gb|AAV29581.1| NT02FT1045 [synthetic construct]
          Length = 178

 Score =  184 bits (469), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 66/165 (40%), Positives = 105/165 (63%), Gaps = 2/165 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + I+GIDPG R TG+G++ V  + + +V+SG I      +   RL Q+ +G+T +I  + 
Sbjct: 8   MVILGIDPGSRITGFGVIKVQDNKIYYVASGCIR-ITEITTPKRLKQIADGITQIINIYA 66

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P EAA+EQ+F+ ++ +  +KLGQAR +A+ + A+  + VSEY+   IK+AV+G G   K 
Sbjct: 67  PTEAAIEQIFMFQNPMGAIKLGQARGVAMCTLAINNLEVSEYSAKQIKQAVVGTGGAAKS 126

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQD 169
           Q+  M++ L+  S    +DAADALAIA+CH YH++    KI+   
Sbjct: 127 QVQHMVQSLLGLSKKPPEDAADALAIAICH-YHSSKSLAKISGAS 170


>gi|198282209|ref|YP_002218530.1| Holliday junction resolvase [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|198246730|gb|ACH82323.1| crossover junction endodeoxyribonuclease RuvC [Acidithiobacillus
           ferrooxidans ATCC 53993]
          Length = 185

 Score =  184 bits (469), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 68/160 (42%), Positives = 98/160 (61%), Gaps = 2/160 (1%)

Query: 2   RKSIRIIGIDPGLRRTGWGIVDVAG-DNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           + ++RIIGIDPG  RTG+GI++      L  V+ G +     Q    R+  +Y  L  +I
Sbjct: 17  QAAVRIIGIDPGSLRTGYGIIESDAAGELRHVAHGCLN-VSGQPFLERIGAIYRELKQII 75

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             + PEEAA+EQVF+ ++A + LKLGQAR  A+++   A +PV EY    IKKA +G GH
Sbjct: 76  GTYHPEEAAIEQVFMARNADSALKLGQARGAALVALLEAGLPVEEYTALQIKKAAVGGGH 135

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
             K+Q+  M++ L+  S     DAADALA A+CHA+H  +
Sbjct: 136 AAKEQVQSMVRWLLKLSENPQADAADALACAICHAHHGRT 175


>gi|303249144|ref|ZP_07335384.1| crossover junction endodeoxyribonuclease RuvC [Desulfovibrio
           fructosovorans JJ]
 gi|302489469|gb|EFL49416.1| crossover junction endodeoxyribonuclease RuvC [Desulfovibrio
           fructosovorans JJ]
          Length = 169

 Score =  184 bits (469), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 57/153 (37%), Positives = 84/153 (54%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           ++G+DPG R TG+G V      L  +++G + +        RL  +Y  +  +I    P 
Sbjct: 9   VLGLDPGSRVTGYGFVRERSGVLELMAAGVVRTGWDTDFCRRLGTIYTAVAKLIGQHAPV 68

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           EAAVE VFV+K+A   LKLGQAR  A+ + ++A +PV  Y P  IKK+++G G  +K Q+
Sbjct: 69  EAAVENVFVSKNAGTALKLGQARGAALAACSVAGLPVFSYEPTIIKKSLVGTGRAEKSQV 128

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHAN 159
             M+  ++        DA DALA AVCH     
Sbjct: 129 AFMVGRVLACRETFAVDATDALAAAVCHLNQRR 161


>gi|120602035|ref|YP_966435.1| Holliday junction resolvase [Desulfovibrio vulgaris DP4]
 gi|166233190|sp|A1VC42|RUVC_DESVV RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|120562264|gb|ABM28008.1| Holliday junction endonuclease RuvC [Desulfovibrio vulgaris DP4]
          Length = 166

 Score =  184 bits (469), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 63/159 (39%), Positives = 87/159 (54%), Gaps = 1/159 (0%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M  S+ +IGIDPG + TGWGIV  A   L  V+ G I        A RL  LY  L DV+
Sbjct: 1   MAASVTVIGIDPGSQCTGWGIVREASGVLTLVNCGAIR-PKGADFAARLGDLYRQLADVV 59

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
           +   P+EAAVE V   ++    LKLGQAR + + + A   +PV +Y P+ IKKA++G G 
Sbjct: 60  RAHTPDEAAVEDVHAAQNVATALKLGQARGVVVAACAAHGVPVIDYRPSVIKKALVGTGR 119

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHAN 159
            +K+Q+  M+  ++        D  DALA A+CH     
Sbjct: 120 AEKEQVGYMVGQVLGVRPDWKLDTGDALAAAICHLNQRR 158


>gi|254282357|ref|ZP_04957325.1| crossover junction endodeoxyribonuclease RuvC [gamma
           proteobacterium NOR51-B]
 gi|219678560|gb|EED34909.1| crossover junction endodeoxyribonuclease RuvC [gamma
           proteobacterium NOR51-B]
          Length = 176

 Score =  184 bits (469), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 52/134 (38%), Positives = 80/134 (59%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R+TG+GI+ +      +V+SG I   V   LA RL  L+  L ++I  ++P 
Sbjct: 4   ILGIDPGSRKTGFGIIRLVSGRSTYVTSGVIRLPVEAELATRLGVLFASLNELIDEYQPT 63

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E ++EQVF+  +A + LKLGQAR  A+++     + V EY+   IK+AV+G G  DK+Q+
Sbjct: 64  ELSIEQVFMAHNAGSALKLGQARGAAMVACVQRDMAVHEYSARQIKQAVVGTGGADKQQV 123

Query: 127 HMMLKMLMPESFFK 140
             M+  L+      
Sbjct: 124 QHMVTRLLQLPATP 137


>gi|123968692|ref|YP_001009550.1| Holliday junction resolvase [Prochlorococcus marinus str. AS9601]
 gi|166233284|sp|A2BRN2|RUVC_PROMS RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|123198802|gb|ABM70443.1| Crossover junction endodeoxyribonuclease RuvC [Prochlorococcus
           marinus str. AS9601]
          Length = 157

 Score =  184 bits (469), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 54/150 (36%), Positives = 85/150 (56%), Gaps = 2/150 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RIIGIDPGL R G+GI+++  +    +  G I +   +    RL ++++ L ++I +W+
Sbjct: 1   MRIIGIDPGLARVGYGIIEIENERKILLDCGVIETGKDKKEEDRLYEIFQDLNELINHWK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P  AAVE+ F  +    T+ + QAR + ++  A  +I VSEY+P  IK  + G G   KK
Sbjct: 61  PTVAAVEKFFFYRS-STTISVVQARGVIMMVLASKKIHVSEYSPAKIKLTIAGSGKASKK 119

Query: 125 QIHMMLK-MLMPESFFKGKDAADALAIAVC 153
            I   +   L  +   K  D+ADALAIA+ 
Sbjct: 120 DILDAVMYNLDLDKPPKPDDSADALAIALT 149


>gi|329888420|ref|ZP_08267018.1| crossover junction endodeoxyribonuclease RuvC [Brevundimonas
           diminuta ATCC 11568]
 gi|328846976|gb|EGF96538.1| crossover junction endodeoxyribonuclease RuvC [Brevundimonas
           diminuta ATCC 11568]
          Length = 170

 Score =  184 bits (469), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 62/137 (45%), Positives = 90/137 (65%)

Query: 2   RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
            ++ RI+G+DPGLRRTGWG+++  G  L +++ G +    +   + RL  L E + +V  
Sbjct: 3   NETTRILGLDPGLRRTGWGVIESEGSRLRWIAHGVVAPDDKAPFSERLLHLLEQVGEVCA 62

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
            +  +EAA+E+VFVN +  +TLKLG ARA  +L+PA A + V+EYAP  IKKAV+G G  
Sbjct: 63  AYDCDEAAIEEVFVNVNPASTLKLGHARAAVMLAPARAGLSVAEYAPTLIKKAVVGAGQA 122

Query: 122 DKKQIHMMLKMLMPESF 138
           DK QI  M+K L+P S 
Sbjct: 123 DKSQIAFMIKRLLPASG 139


>gi|58616730|ref|YP_195929.1| crossover junction endodeoxyribonuclease RuvC [Ehrlichia
           ruminantium str. Gardel]
 gi|75432634|sp|Q5FF10|RUVC_EHRRG RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|58416342|emb|CAI27455.1| Crossover junction endodeoxyribonuclease RuvC [Ehrlichia
           ruminantium str. Gardel]
          Length = 160

 Score =  184 bits (469), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 52/156 (33%), Positives = 101/156 (64%), Gaps = 3/156 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDN---LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           + IIGIDP L  TGW I+ V  +N   +  V++G+I++  ++++  RL ++Y  L +++ 
Sbjct: 1   MNIIGIDPSLNSTGWAILSVNDNNYNEIRLVNNGSILTSNKKTIGERLNKIYSELLNILN 60

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
           +++ + A++E++F+NK+  ++  L  AR I +L+  +A IP+ EY+ N +KK++ G GH 
Sbjct: 61  SYKVDTASMEEIFINKNPKSSTLLCYARGILLLTLDVACIPLFEYSANRVKKSITGNGHA 120

Query: 122 DKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYH 157
            K+Q+  M++ ++    +   D +DA+A+A+CH Y 
Sbjct: 121 KKEQVCFMIENILNIKCYGTYDISDAIAVAICHIYS 156


>gi|146338240|ref|YP_001203288.1| Holliday junction resolvase [Bradyrhizobium sp. ORS278]
 gi|166231583|sp|A4YMC5|RUVC_BRASO RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|146191046|emb|CAL75051.1| Crossover junction endodeoxyribonuclease ruvC (Holliday junction
           nuclease ruvC) [Bradyrhizobium sp. ORS278]
          Length = 175

 Score =  184 bits (468), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 83/155 (53%), Positives = 111/155 (71%)

Query: 11  DPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAV 70
           DPGLRRTGWG+++  G+ L +V  G++       LA RL  ++EGL  V+ +++P EAAV
Sbjct: 16  DPGLRRTGWGVIESEGNRLIYVGCGSVEPPDDLPLASRLLAIHEGLAKVLADFQPLEAAV 75

Query: 71  EQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMML 130
           EQ FVNKD VATLKLGQAR IA+L+PA+  I V+EYAPN +KK V+G GH DK QI +ML
Sbjct: 76  EQTFVNKDGVATLKLGQARGIAMLAPAMFGITVAEYAPNQVKKTVVGAGHADKGQIAVML 135

Query: 131 KMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
           K+L+P++     DAADALAIA+ HA+H      ++
Sbjct: 136 KILLPKAEPPSADAADALAIAITHAHHRQGQALRM 170


>gi|119477228|ref|ZP_01617464.1| Holliday junction resolvase [marine gamma proteobacterium HTCC2143]
 gi|119449591|gb|EAW30829.1| Holliday junction resolvase [marine gamma proteobacterium HTCC2143]
          Length = 173

 Score =  184 bits (468), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 63/154 (40%), Positives = 98/154 (63%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R+TG+GI++V G +  +V+SG I   + Q L  R+  L   + ++I    P+
Sbjct: 4   ILGIDPGSRKTGFGIINVNGSHHDYVTSGVIRLPIEQELPERIKVLVSSIQEIIALHCPQ 63

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           + ++EQVF+  +A + LKLGQAR  AI +     + V+EY+   IK+AV+G G   K+Q+
Sbjct: 64  QVSIEQVFMASNAGSALKLGQARGAAIAACVSNDLEVAEYSARQIKQAVVGTGAAKKEQV 123

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
             M+K+L+       +DAADALA A+CHA+ + S
Sbjct: 124 QHMVKILLKLPAMPQEDAADALAAAICHAHTSAS 157


>gi|157165401|ref|YP_001467853.1| Holliday junction resolvase [Campylobacter concisus 13826]
 gi|166231591|sp|A7ZGE5|RUVC_CAMC1 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|112801768|gb|EAT99112.1| crossover junction endodeoxyribonuclease RuvC [Campylobacter
           concisus 13826]
          Length = 157

 Score =  184 bits (468), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 48/154 (31%), Positives = 78/154 (50%), Gaps = 2/154 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++I+GIDPG +  G+ I++ +      + +G I       L +++ +L EGL  + KN +
Sbjct: 1   MKILGIDPGTKNCGYAILEKSKFKTILLEAGLIKIKPNT-LQYQITELCEGLDLIFKNHK 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
            +E A+E +F   +    LKL Q R    L         +EY P  +KK V G    DK+
Sbjct: 60  FDEVAIEDIFFAYNPKTVLKLAQFRGALSLKILQLHGDFAEYTPLQVKKTVTGKAKADKE 119

Query: 125 QIHMMLKMLMP-ESFFKGKDAADALAIAVCHAYH 157
           Q+  M+K ++      K  D  DA+AIA+ HA +
Sbjct: 120 QVAFMVKKILGINKEIKPLDITDAIAIALTHANN 153


>gi|193215492|ref|YP_001996691.1| crossover junction endodeoxyribonuclease RuvC [Chloroherpeton
           thalassium ATCC 35110]
 gi|238692692|sp|B3QTP6|RUVC_CHLT3 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|193088969|gb|ACF14244.1| crossover junction endodeoxyribonuclease RuvC [Chloroherpeton
           thalassium ATCC 35110]
          Length = 186

 Score =  184 bits (468), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 47/157 (29%), Positives = 80/157 (50%), Gaps = 1/157 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +  +G+DPG   TG+G++  +           I    +     R+  +Y+ L  VI  ++
Sbjct: 1   MITLGVDPGSIVTGYGVIGKSEAGFRVFDYSAIRPGGKCDFPQRIKYIYDTLEKVICAYK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P + ++E  F  K+A + LKLGQ R   I+      +   EY+P  +KK+V G G+  K+
Sbjct: 61  PTQLSLETAFYGKNAQSALKLGQVRGAIIILAMNYNLKFVEYSPREVKKSVAGTGNASKE 120

Query: 125 QIHMMLKMLMPESFFKGK-DAADALAIAVCHAYHANS 160
           Q+  M+K ++     K   D +DALAIA+C  + + S
Sbjct: 121 QVAYMVKKMLSIDDEKMALDTSDALAIALCGHFKSAS 157


>gi|254429277|ref|ZP_05042984.1| crossover junction endodeoxyribonuclease RuvC [Alcanivorax sp.
           DG881]
 gi|196195446|gb|EDX90405.1| crossover junction endodeoxyribonuclease RuvC [Alcanivorax sp.
           DG881]
          Length = 187

 Score =  184 bits (468), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 67/162 (41%), Positives = 103/162 (63%), Gaps = 2/162 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG RRTG+G+VDV G+    V+ GTI +  +  +  RL +++ G+  V+K + P 
Sbjct: 19  ILGIDPGSRRTGYGVVDVVGNRSRAVAFGTIATTHK-EIPPRLGEIFAGIDQVVKEFGPA 77

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E ++E+VF+ ++A + LKLGQAR  AI +   A +PV EY+   +K+AV+G G  +K Q+
Sbjct: 78  EVSIEKVFMARNADSALKLGQARGAAIAAVMQAHVPVFEYSARQVKQAVVGKGGAEKNQV 137

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
             M+K L+       +DAADALAIA+CHA+   S   ++   
Sbjct: 138 GEMVKYLLKLEQRPQEDAADALAIALCHAHMRVS-LARMGGA 178


>gi|118497618|ref|YP_898668.1| holliday junction endodeoxyribonuclease [Francisella tularensis
           subsp. novicida U112]
 gi|134302040|ref|YP_001122009.1| Holliday junction resolvase [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|187931871|ref|YP_001891856.1| Holliday junction resolvase [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|195536319|ref|ZP_03079326.1| crossover junction endodeoxyribonuclease RuvC [Francisella
           tularensis subsp. novicida FTE]
 gi|224456849|ref|ZP_03665322.1| Holliday junction resolvase [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254374433|ref|ZP_04989915.1| hypothetical protein FTDG_00602 [Francisella novicida GA99-3548]
 gi|110287673|sp|Q5NH18|RUVC_FRATT RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|166233193|sp|A0Q6P9|RUVC_FRATN RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|166233194|sp|A4IY87|RUVC_FRATW RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|187611415|sp|Q14IH0|RUVC_FRAT1 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|238691572|sp|B2SH69|RUVC_FRATM RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|118423524|gb|ABK89914.1| holliday junction endodeoxyribonuclease [Francisella novicida U112]
 gi|134049817|gb|ABO46888.1| crossover junction endodeoxyribonuclease RuvC [Francisella
           tularensis subsp. tularensis WY96-3418]
 gi|151572153|gb|EDN37807.1| hypothetical protein FTDG_00602 [Francisella novicida GA99-3548]
 gi|187712780|gb|ACD31077.1| crossover junction endodeoxyribonuclease RuvC [Francisella
           tularensis subsp. mediasiatica FSC147]
 gi|194372796|gb|EDX27507.1| crossover junction endodeoxyribonuclease RuvC [Francisella
           tularensis subsp. novicida FTE]
 gi|332678323|gb|AEE87452.1| Crossover junction endodeoxyribonuclease RuvC [Francisella cf.
           novicida Fx1]
          Length = 171

 Score =  184 bits (468), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 66/165 (40%), Positives = 105/165 (63%), Gaps = 2/165 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + I+GIDPG R TG+G++ V  + + +V+SG I      +   RL Q+ +G+T +I  + 
Sbjct: 1   MVILGIDPGSRITGFGVIKVQDNKIYYVASGCIR-ITEITTPKRLKQIADGITQIINIYA 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P EAA+EQ+F+ ++ +  +KLGQAR +A+ + A+  + VSEY+   IK+AV+G G   K 
Sbjct: 60  PTEAAIEQIFMFQNPMGAIKLGQARGVAMCTLAINNLEVSEYSAKQIKQAVVGTGGAAKS 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQD 169
           Q+  M++ L+  S    +DAADALAIA+CH YH++    KI+   
Sbjct: 120 QVQHMVQSLLGLSKKPPEDAADALAIAICH-YHSSKSLAKISGAS 163


>gi|121535578|ref|ZP_01667385.1| crossover junction endodeoxyribonuclease RuvC [Thermosinus
           carboxydivorans Nor1]
 gi|121305818|gb|EAX46753.1| crossover junction endodeoxyribonuclease RuvC [Thermosinus
           carboxydivorans Nor1]
          Length = 165

 Score =  184 bits (468), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 46/133 (34%), Positives = 73/133 (54%)

Query: 8   IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEE 67
           +GIDPG    G+G V++ G  L  V  G + +  + S   RL  +++ L  +IK  RP+ 
Sbjct: 4   LGIDPGTAICGYGFVELRGSTLHAVDWGAVETSPKLSSTERLKIIFQDLDSLIKRQRPDI 63

Query: 68  AAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIH 127
             VEQ+F NK+    + +GQAR + +L+ AL  I V E  P  +K++V+G G   K+Q+ 
Sbjct: 64  IGVEQLFFNKNVTTAMTVGQARGVVLLAAALNNIKVLECTPLQVKQSVVGYGRATKEQVM 123

Query: 128 MMLKMLMPESFFK 140
            M + L+  S   
Sbjct: 124 YMTQRLLNLSEKP 136


>gi|56707778|ref|YP_169674.1| Holliday junction resolvase [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110670249|ref|YP_666806.1| Holliday junction resolvase [Francisella tularensis subsp.
           tularensis FSC198]
 gi|254370277|ref|ZP_04986282.1| holliday junction endodeoxyribonuclease [Francisella tularensis
           subsp. tularensis FSC033]
 gi|254874590|ref|ZP_05247300.1| holliday junction endodeoxyribonuclease [Francisella tularensis
           subsp. tularensis MA00-2987]
 gi|56604270|emb|CAG45289.1| holliday junction endodeoxyribonuclease [Francisella tularensis
           subsp. tularensis SCHU S4]
 gi|110320582|emb|CAL08672.1| holliday junction endodeoxyribonuclease [Francisella tularensis
           subsp. tularensis FSC198]
 gi|151568520|gb|EDN34174.1| holliday junction endodeoxyribonuclease [Francisella tularensis
           subsp. tularensis FSC033]
 gi|254840589|gb|EET19025.1| holliday junction endodeoxyribonuclease [Francisella tularensis
           subsp. tularensis MA00-2987]
 gi|282158950|gb|ADA78341.1| holliday junction endodeoxyribonuclease [Francisella tularensis
           subsp. tularensis NE061598]
          Length = 178

 Score =  184 bits (468), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 66/165 (40%), Positives = 105/165 (63%), Gaps = 2/165 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + I+GIDPG R TG+G++ V  + + +V+SG I      +   RL Q+ +G+T +I  + 
Sbjct: 8   MVILGIDPGSRITGFGVIKVQDNKIYYVASGCIR-ITEITTPKRLKQIADGITQIINIYA 66

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P EAA+EQ+F+ ++ +  +KLGQAR +A+ + A+  + VSEY+   IK+AV+G G   K 
Sbjct: 67  PTEAAIEQIFMFQNPMGAIKLGQARGVAMCTLAINNLEVSEYSAKQIKQAVVGTGGAAKS 126

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQD 169
           Q+  M++ L+  S    +DAADALAIA+CH YH++    KI+   
Sbjct: 127 QVQHMVQSLLGLSKKPPEDAADALAIAICH-YHSSKSLAKISGAS 170


>gi|332184197|gb|AEE26451.1| Crossover junction endodeoxyribonuclease RuvC [Francisella cf.
           novicida 3523]
          Length = 171

 Score =  184 bits (467), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 65/165 (39%), Positives = 105/165 (63%), Gaps = 2/165 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + I+GIDPG R TG+G++ V  + + +V+SG I      +   RL Q+ +G+T +I  + 
Sbjct: 1   MVILGIDPGSRITGFGVIKVQDNKIYYVASGCIR-ITEITTPRRLKQIADGITQIINIYA 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P EAA+EQ+F+ ++ +  +KLGQAR +A+ + A+  + VSEY+   IK+AV+G G   K 
Sbjct: 60  PTEAAIEQIFMFQNPMGAIKLGQARGVAMCTLAINNLEVSEYSAKQIKQAVVGTGGAAKS 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQD 169
           Q+  M++ L+  S    +DAADALAIA+CH YH++    +I+   
Sbjct: 120 QVQHMVQSLLGLSKKPPEDAADALAIAICH-YHSSKSLARISGAS 163


>gi|294508699|ref|YP_003572758.1| Crossover junction endodeoxyribonuclease RuvC [Salinibacter ruber
           M8]
 gi|294345028|emb|CBH25806.1| Crossover junction endodeoxyribonuclease RuvC [Salinibacter ruber
           M8]
          Length = 179

 Score =  184 bits (467), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 57/154 (37%), Positives = 89/154 (57%), Gaps = 1/154 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + I+G+DPG R TG+G+VD +  +   V++ TI          RL Q+Y+ L DVI    
Sbjct: 1   MIILGVDPGSRATGYGLVDPSSGDEHLVAADTIRLADTDDHPTRLKQIYDALVDVIDAHG 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+E AVE     ++  + LKLG+A+A A+++     +PV++Y P  +KK+V G G+  KK
Sbjct: 61  PDEFAVEMPVYGQNPQSMLKLGRAQAAAMMAALNRDLPVAQYTPKEVKKSVTGNGNASKK 120

Query: 125 QIHMMLKMLMPESFFKGK-DAADALAIAVCHAYH 157
           Q+  M++ ++         D ADALAIA+CH   
Sbjct: 121 QVGFMIESILSAGEQTFAHDTADALAIALCHGNR 154


>gi|317121685|ref|YP_004101688.1| crossover junction endodeoxyribonuclease RuvC [Thermaerobacter
           marianensis DSM 12885]
 gi|315591665|gb|ADU50961.1| crossover junction endodeoxyribonuclease RuvC [Thermaerobacter
           marianensis DSM 12885]
          Length = 185

 Score =  184 bits (467), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 52/136 (38%), Positives = 85/136 (62%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++++GIDPG    G+G+V VAG  L  V+ G I +   Q  A RL  +Y  L +++  +R
Sbjct: 1   MQVLGIDPGTATMGFGVVAVAGTTLVPVTYGVIRTPASQPPALRLASIYRDLQELLGRYR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  AVE++F+ K+  + L +GQAR +A+L+ A A +PV EYAP+ +K+AV+G G   K 
Sbjct: 61  PQAMAVERLFLQKNRSSALHVGQARGVALLAAAQAGLPVYEYAPHEVKQAVVGYGRASKA 120

Query: 125 QIHMMLKMLMPESFFK 140
           Q+  M++ L+  +   
Sbjct: 121 QVQRMVQALLGLARPP 136


>gi|83950118|ref|ZP_00958851.1| Holliday junction resolvase [Roseovarius nubinhibens ISM]
 gi|83838017|gb|EAP77313.1| Holliday junction resolvase [Roseovarius nubinhibens ISM]
          Length = 167

 Score =  184 bits (467), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 85/157 (54%), Positives = 109/157 (69%), Gaps = 1/157 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPGLR  GWG++DV+G  L  V++G         LA RL  L+  LT+++  + 
Sbjct: 1   MRVLGIDPGLRNLGWGVIDVSGSRLSHVANGVCH-STGDDLAQRLLSLHIQLTEIVARFA 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ AA+EQ FVNKD VATLKLGQAR IA+L PA A I V EYAPN +KK V+GVGH DK 
Sbjct: 60  PDTAAIEQTFVNKDGVATLKLGQARGIALLVPAQAGISVGEYAPNRVKKTVVGVGHADKG 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSG 161
           QI  M+KM +P +     DAADALAIA+CHA++   G
Sbjct: 120 QIAHMVKMQLPGANPASPDAADALAIAICHAHYTRGG 156


>gi|153951955|ref|YP_001399004.1| Holliday junction resolvase [Campylobacter jejuni subsp. doylei
           269.97]
 gi|166233185|sp|A7H674|RUVC_CAMJD RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|152939401|gb|ABS44142.1| crossover junction endodeoxyribonuclease RuvC [Campylobacter jejuni
           subsp. doylei 269.97]
          Length = 160

 Score =  184 bits (467), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 50/153 (32%), Positives = 78/153 (50%), Gaps = 2/153 (1%)

Query: 4   SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +++I+GIDPG +  G+ I++ +      + +G I       L +++ +L EGL  + KN 
Sbjct: 2   NLKILGIDPGSKNCGYAIIERSKGKNILIEAGLIKIKPST-LQYQITELCEGLDLIFKNH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
             +E A+E +F   +    LKL Q R    L         +EY P  +KKAV G     K
Sbjct: 61  SFDEVAIEDIFFAYNPKTVLKLAQFRGALSLKILQIHGDFAEYTPLQVKKAVTGKAKATK 120

Query: 124 KQIHMMLKMLMPESF-FKGKDAADALAIAVCHA 155
           +Q+  M+K L+  S   K  D  DA+AIA+ HA
Sbjct: 121 EQVAFMVKRLLGLSKDIKPLDITDAIAIALTHA 153


>gi|301168495|emb|CBW28085.1| putative crossover Holliday junction endodeoxyribonuclease RuvC
           [Bacteriovorax marinus SJ]
          Length = 179

 Score =  184 bits (467), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 52/151 (34%), Positives = 87/151 (57%), Gaps = 1/151 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++I+GIDPG R+ GW +++  G    +++SG +      +   RL  +++ + ++I+ +R
Sbjct: 1   MKILGIDPGSRKAGWALIEKEGRKTTYLASGVLKYDKIDNFLDRLGVIHQSICELIEEYR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPA-LARIPVSEYAPNTIKKAVIGVGHGDK 123
           P+E A+E +   K+  +  KL QAR   + +     +  V EY+P  IK++V G GH DK
Sbjct: 61  PDEVALESLIFVKNVNSLAKLAQARGAMLAAIIPSYQGSVFEYSPTLIKQSVSGYGHADK 120

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCH 154
             I   L M+  +  FK  D +DALAIA+CH
Sbjct: 121 AAIEKTLGMIFGKIEFKTNDESDALAIALCH 151


>gi|292490334|ref|YP_003525773.1| crossover junction endodeoxyribonuclease RuvC [Nitrosococcus
           halophilus Nc4]
 gi|291578929|gb|ADE13386.1| crossover junction endodeoxyribonuclease RuvC [Nitrosococcus
           halophilus Nc4]
          Length = 174

 Score =  184 bits (467), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 52/136 (38%), Positives = 87/136 (63%), Gaps = 1/136 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPG R TG+G+++  G    ++++G I       LA RL ++++G+T +I+++ 
Sbjct: 2   VRILGIDPGSRITGYGLIETNGKEAAYITAGCIQ-AGNGELAERLGRIFKGITAIIEDYH 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+E AVEQVF++++  A LKLG AR  AI +     +PV EY P+ +K+AV+G G   K 
Sbjct: 61  PDEVAVEQVFMHQNPGAALKLGHARGAAICAAMNVVLPVFEYTPSQVKQAVVGRGDAAKS 120

Query: 125 QIHMMLKMLMPESFFK 140
           Q+  M+++L+      
Sbjct: 121 QVQYMIRLLLKLPSEP 136


>gi|162453353|ref|YP_001615720.1| Holliday junction resolvase RuvC [Sorangium cellulosum 'So ce 56']
 gi|189046083|sp|A9FR00|RUVC_SORC5 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|161163935|emb|CAN95240.1| Holliday Junction Resolvase RuvC [Sorangium cellulosum 'So ce 56']
          Length = 179

 Score =  184 bits (467), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 57/150 (38%), Positives = 88/150 (58%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPG R  GWG++   G  +  V+ G I      + A RL ++ + L  VI +  
Sbjct: 1   MRVLGIDPGSRHLGWGLLVRQGTRIEHVAHGVIDIDTSGTFAARLVEIDDELGKVIASHA 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ AAVE +F  KDA +  KLG AR + +L  A A +P+SEY P  +K+ ++G G  +K 
Sbjct: 61  PDAAAVESLFFAKDAQSAAKLGHARGVVLLRLARAGVPISEYPPALVKRTIVGRGAAEKA 120

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCH 154
           Q+  ++  ++  +     DAADALAIA+ H
Sbjct: 121 QVAQVMTAVLRLAAPPRPDAADALAIAMTH 150


>gi|114776335|ref|ZP_01451380.1| Crossover junction endodeoxyribonuclease RuvC [Mariprofundus
           ferrooxydans PV-1]
 gi|114553165|gb|EAU55563.1| Crossover junction endodeoxyribonuclease RuvC [Mariprofundus
           ferrooxydans PV-1]
          Length = 163

 Score =  184 bits (467), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 66/154 (42%), Positives = 96/154 (62%), Gaps = 1/154 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+G+DPG  +TG GI+DV G+ +  V    I  C       RL  L+ GL  VI  + 
Sbjct: 1   MRILGVDPGSLKTGVGIIDVQGNRIRHVHHSVIR-CGAGDFDDRLHILFSGLKLVIAEFH 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P  AA+E VFV+K+  + LKLGQAR   I +   + + VS Y+P  +K+AV+G G  DK+
Sbjct: 60  PTLAAIEDVFVSKNVNSALKLGQARGALIAACTDSGLRVSPYSPTKVKQAVVGFGRADKE 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHA 158
           Q+  M+++L+       +DAADALA+A+CHA+HA
Sbjct: 120 QVQHMIRILLHPPEPLAEDAADALAVAICHAHHA 153


>gi|256391547|ref|YP_003113111.1| crossover junction endodeoxyribonuclease RuvC [Catenulispora
           acidiphila DSM 44928]
 gi|256357773|gb|ACU71270.1| crossover junction endodeoxyribonuclease RuvC [Catenulispora
           acidiphila DSM 44928]
          Length = 170

 Score =  184 bits (467), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 55/165 (33%), Positives = 86/165 (52%), Gaps = 2/165 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G G+V+   G  L  V  G I +     L+ RL  +  GL   +   
Sbjct: 1   MRVLGVDPGLTRCGVGVVEGTPGRPLTLVGVGVIRTPADMDLSRRLLAIETGLEQWLAEH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +PE  AVE+VF   +    +   QA A+A+L  A   +PV+ + P+ +K A+ G G   K
Sbjct: 61  QPEAVAVERVFSQHNVSTVMGTAQASAVAMLVAARHGLPVALHTPSEVKAAISGSGRAGK 120

Query: 124 KQIHMML-KMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
            Q+  M+ ++L      K  DAADA A+A+CH +   +     A+
Sbjct: 121 DQVATMVARVLRLAEPPKPADAADAAALAICHIWRGTANSRLAAA 165


>gi|257063439|ref|YP_003143111.1| crossover junction endodeoxyribonuclease RuvC [Slackia
           heliotrinireducens DSM 20476]
 gi|256791092|gb|ACV21762.1| crossover junction endodeoxyribonuclease RuvC [Slackia
           heliotrinireducens DSM 20476]
          Length = 165

 Score =  183 bits (466), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 44/141 (31%), Positives = 73/141 (51%)

Query: 3   KSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
           ++  I+GIDPGL  TGWG++   G  L  V+ G I +     L  RL +L++ +  V+K 
Sbjct: 5   ENRTILGIDPGLANTGWGVIRQRGPRLSCVAYGCISTSADMDLPSRLLKLHDQMELVVKR 64

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
           + P    +E ++   +  A +   QAR   +++ A   + + E+ P  IK AV+G G+ D
Sbjct: 65  FEPTCLGIETIWFGANVTAGILTSQARGAVLVACASQGLSIGEFTPKQIKLAVVGEGNSD 124

Query: 123 KKQIHMMLKMLMPESFFKGKD 143
           K Q+  M+K L+        D
Sbjct: 125 KMQVQYMVKQLLSLDDPPHPD 145


>gi|189499517|ref|YP_001958987.1| crossover junction endodeoxyribonuclease RuvC [Chlorobium
           phaeobacteroides BS1]
 gi|189494958|gb|ACE03506.1| crossover junction endodeoxyribonuclease RuvC [Chlorobium
           phaeobacteroides BS1]
          Length = 186

 Score =  183 bits (466), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 58/163 (35%), Positives = 80/163 (49%), Gaps = 2/163 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           +IGIDPG  +TG+GIV   GD    VS G I    RQ +  R+  +Y+ L  +I   RP 
Sbjct: 2   VIGIDPGSVKTGYGIVRSEGDTFSLVSCGVIRLSSRQCIPERIKIIYDTLEALIAQHRPA 61

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+E  +VN++A + LKLGQ R   +         + EYAP  +KK + G G   K Q+
Sbjct: 62  RLALETAYVNRNAQSALKLGQVRGAIVALAMNTGTGLHEYAPREVKKMLTGRGAASKDQV 121

Query: 127 HMMLKMLMP-ESFFKGKDAADALAIAVCH-AYHANSGYYKIAS 167
             M +  +      K  D  DAL IA+C   Y    G  + A 
Sbjct: 122 AYMARHFLNVVEPIKPHDITDALGIALCDLIYEGKKGSGRTAG 164


>gi|254372982|ref|ZP_04988471.1| holliday junction endodeoxyribonuclease [Francisella tularensis
           subsp. novicida GA99-3549]
 gi|151570709|gb|EDN36363.1| holliday junction endodeoxyribonuclease [Francisella novicida
           GA99-3549]
          Length = 171

 Score =  183 bits (466), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 66/165 (40%), Positives = 105/165 (63%), Gaps = 2/165 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + I+GIDPG R TG+G++ V  + + +V+SG I      +   RL Q+ +G+T +I  + 
Sbjct: 1   MVILGIDPGSRITGFGVIKVQENKIYYVASGCIR-ITEITTPKRLKQIADGITQIINIYA 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P EAA+EQ+F+ ++ +  +KLGQAR +A+ + A+  + VSEY+   IK+AV+G G   K 
Sbjct: 60  PTEAAIEQIFMFQNPMGAIKLGQARGVAMCTLAINNLEVSEYSAKQIKQAVVGTGGAAKS 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQD 169
           Q+  M++ L+  S    +DAADALAIA+CH YH++    KI+   
Sbjct: 120 QVQHMVQSLLGLSKKPPEDAADALAIAICH-YHSSKSLAKISGAS 163


>gi|90022180|ref|YP_528007.1| Holliday junction resolvase [Saccharophagus degradans 2-40]
 gi|122996072|sp|Q21HN4|RUVC_SACD2 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|89951780|gb|ABD81795.1| crossover junction endodeoxyribonuclease RuvC [Saccharophagus
           degradans 2-40]
          Length = 173

 Score =  183 bits (466), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 47/135 (34%), Positives = 80/135 (59%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           ++G+DPG  +TG+G+V+       +++SG I       L  RL  ++E L ++I+ ++P 
Sbjct: 4   VLGVDPGSLKTGFGLVNHVSGRCEYIASGVIRMKSSDELPERLKTIFESLVEIIECYQPS 63

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E+VF+ K A + LKLGQAR  AI++     +PV EY    +K++V+G G  DK Q+
Sbjct: 64  EFAIEKVFMAKSAGSALKLGQARGAAIVAAVTNGLPVGEYEARKVKQSVVGSGAADKSQV 123

Query: 127 HMMLKMLMPESFFKG 141
             M++ L+  +    
Sbjct: 124 QHMVRTLLHLTATPQ 138


>gi|163796367|ref|ZP_02190328.1| Holliday junction resolvasome, endonuclease subunit [alpha
           proteobacterium BAL199]
 gi|159178509|gb|EDP63051.1| Holliday junction resolvasome, endonuclease subunit [alpha
           proteobacterium BAL199]
          Length = 198

 Score =  183 bits (466), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 62/131 (47%), Positives = 93/131 (70%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R+IG+DPGLR TGWG++++ G  L  ++ GT+ S     +A RL QLY+G+ ++I+ W 
Sbjct: 1   MRLIGLDPGLRNTGWGVIEMDGHALRHIADGTVHSDGDAPIATRLVQLYDGVLELIERWN 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P EAAVE+ FVN++  +TLKLG AR + +L+PA A + VSEYAP  +KK+V+G G   K+
Sbjct: 61  PSEAAVEETFVNRNPESTLKLGLARGVVLLAPAKAGLLVSEYAPKRVKKSVVGTGSASKE 120

Query: 125 QIHMMLKMLMP 135
           Q+  M+  L+P
Sbjct: 121 QVQAMIATLLP 131


>gi|71277765|ref|YP_268841.1| crossover junction endodeoxyribonuclease RuvC [Colwellia
           psychrerythraea 34H]
 gi|110287670|sp|Q483C6|RUVC_COLP3 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|71143505|gb|AAZ23978.1| crossover junction endodeoxyribonuclease RuvC [Colwellia
           psychrerythraea 34H]
          Length = 175

 Score =  183 bits (466), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 58/163 (35%), Positives = 93/163 (57%), Gaps = 1/163 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIV-SCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           I+GIDPG R TG+G++        ++ SG I      + LA RL  ++ G++++I  ++P
Sbjct: 4   ILGIDPGSRFTGYGVIKQEKQRFTYLGSGCIKAMSQGEDLASRLQTIFAGVSELIIQFKP 63

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
           +  A+EQVF+  +    LKLGQAR  AI++   + + ++EY+   IK+AV+G G  DK Q
Sbjct: 64  DMFAIEQVFMGVNPGGALKLGQARGAAIVAATNSGLTIAEYSARQIKQAVVGTGAADKNQ 123

Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
           +  M+K ++        DAADALA+A+CH +   S        
Sbjct: 124 VQHMVKSILKLPGTPQADAADALAVALCHGHSHTSAAILAGQA 166


>gi|237753475|ref|ZP_04583955.1| holliday junction resolvase [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229375742|gb|EEO25833.1| holliday junction resolvase [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 163

 Score =  183 bits (466), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 45/154 (29%), Positives = 75/154 (48%), Gaps = 2/154 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + I+GIDPG R  G+ I+ +    +  + +G I     + L  ++ +  EG+  V+K  +
Sbjct: 1   MNILGIDPGSRNCGYAIIKLENGAISLIEAGLIK-IKERILQDQIVEFVEGIDLVLKQHK 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
            +  A+E +F   +    +KL Q R    L         +EY P  +KKA+ G G   K+
Sbjct: 60  IDSVAIEDMFYAYNPKTVIKLAQFRGALSLKILQELGNFAEYTPLQVKKALTGNGKAAKE 119

Query: 125 QIHMMLKMLMP-ESFFKGKDAADALAIAVCHAYH 157
           Q+  M+K L+  +   K  D  DA+AIA+ H   
Sbjct: 120 QVAFMVKRLLGIKGEIKPLDITDAIAIAITHVQR 153


>gi|154149136|ref|YP_001407304.1| Holliday junction resolvase [Campylobacter hominis ATCC BAA-381]
 gi|166232079|sp|A7I463|RUVC_CAMHC RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|153805145|gb|ABS52152.1| crossover junction endodeoxyribonuclease RuvC [Campylobacter
           hominis ATCC BAA-381]
          Length = 158

 Score =  183 bits (466), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 48/154 (31%), Positives = 81/154 (52%), Gaps = 2/154 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++I+GIDPG R  G+ +++   + +  + +G I     ++L F+L Q+ E +  + +  +
Sbjct: 1   MKILGIDPGTRNMGYAVLEKNVNKISLIEAGLIKMKP-ENLQFQLTQMCEAIDQIFEFHK 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
            +E A+E +F   +  + LKL Q R    L         +EY P  IKK V G    DK 
Sbjct: 60  IDEVAIESMFYAYNPQSVLKLAQFRGGLSLKILQVFGNFAEYTPLQIKKNVTGKAKADKT 119

Query: 125 QIHMMLKMLMPESF-FKGKDAADALAIAVCHAYH 157
           Q+  M+K ++  S   K  D  DA+AIA+ HA++
Sbjct: 120 QVAFMVKKMLGISKDIKPLDVTDAIAIAITHAHN 153


>gi|57506230|ref|ZP_00372149.1| crossover junction endodeoxyribonuclease RuvC [Campylobacter
           upsaliensis RM3195]
 gi|57015498|gb|EAL52293.1| crossover junction endodeoxyribonuclease RuvC [Campylobacter
           upsaliensis RM3195]
          Length = 159

 Score =  183 bits (466), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 51/154 (33%), Positives = 79/154 (51%), Gaps = 2/154 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++I+GIDPG R  G+ I++V       + +G I       L +++ +L EGL  + K+  
Sbjct: 1   MKILGIDPGSRFCGYAILEVIKGKNILIEAGLIKIKPST-LQYQITELCEGLDLIFKHHH 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
            +E A+E +F   +  + LKL Q R    L         +EY+P  IKK + G     K+
Sbjct: 60  FDEVAIEDIFFAYNPQSVLKLAQFRGALSLKILQLHGEFAEYSPLQIKKTITGKAKASKE 119

Query: 125 QIHMMLKMLMPESF-FKGKDAADALAIAVCHAYH 157
           Q+  M+K L+  S   K  D  DA+AIA+ HA H
Sbjct: 120 QVAFMVKRLLGISKDIKPLDITDAIAIALTHAAH 153


>gi|227542218|ref|ZP_03972267.1| Holliday junction resolvase [Corynebacterium glucuronolyticum ATCC
           51866]
 gi|227182047|gb|EEI63019.1| Holliday junction resolvase [Corynebacterium glucuronolyticum ATCC
           51866]
          Length = 222

 Score =  183 bits (466), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 46/138 (33%), Positives = 74/138 (53%), Gaps = 1/138 (0%)

Query: 4   SIRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
            +R++GIDPGL R G  IV    G  +  V+ G   +  + S+  RL +LYE +TD I  
Sbjct: 6   GLRVLGIDPGLTRCGLSIVQAGKGRTVIPVAVGVARTPYKSSMGDRLKELYEAITDWIAE 65

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
           ++P+  A+E++F   +    L    A  + IL+ + A + V EY P+ +KKA+ G G  D
Sbjct: 66  YKPDVVAMERLFERGEVSTVLHTAHAVGVLILAASQANLDVHEYTPSQVKKAITGNGRAD 125

Query: 123 KKQIHMMLKMLMPESFFK 140
           KKQ+  M+  ++      
Sbjct: 126 KKQMTAMVTRILGLENPP 143


>gi|294678732|ref|YP_003579347.1| crossover junction endodeoxyribonuclease RuvC [Rhodobacter
           capsulatus SB 1003]
 gi|294477552|gb|ADE86940.1| crossover junction endodeoxyribonuclease RuvC [Rhodobacter
           capsulatus SB 1003]
          Length = 183

 Score =  183 bits (465), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 93/163 (57%), Positives = 114/163 (69%), Gaps = 1/163 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R+IGIDPGLR  GWG+++V G  L  +++G I S     LA RL  L+ GLT VI   R
Sbjct: 1   MRVIGIDPGLRNLGWGVIEVDGARLRHIANGIIHSE-GTDLAKRLVVLHAGLTAVIATHR 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           PE AAVEQ FVNKDAVATLKLGQAR IA+L PA A + + EYAPN +KKAV+GVGH DK 
Sbjct: 60  PEAAAVEQTFVNKDAVATLKLGQARGIALLVPAQAGLEIGEYAPNAVKKAVVGVGHADKG 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
           Q+  M++  +P   F G DAADALAIA+CHA+H  S     A+
Sbjct: 120 QVQHMVRHQLPGVVFDGPDAADALAIAICHAHHLQSARRASAA 162


>gi|160947138|ref|ZP_02094305.1| hypothetical protein PEPMIC_01070 [Parvimonas micra ATCC 33270]
 gi|158446272|gb|EDP23267.1| hypothetical protein PEPMIC_01070 [Parvimonas micra ATCC 33270]
          Length = 182

 Score =  183 bits (465), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 43/134 (32%), Positives = 69/134 (51%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I G+DPG+   G+GI++  G+ +  +  G I +     L  RL  + E L  +I+    +
Sbjct: 21  IFGLDPGIAIVGYGIIEAIGNRVRLIDYGVIETKAGIPLPDRLKIIDEELNRLIELHNVD 80

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E++F NK+    + + QAR + ILS     I   EY P  +K+A+ G G  DKKQ+
Sbjct: 81  ELAIEELFFNKNVKTVINVAQARGVEILSFIKKNILAYEYTPLQVKQAITGYGRADKKQM 140

Query: 127 HMMLKMLMPESFFK 140
              +KM+       
Sbjct: 141 QESVKMIFKLKAVP 154


>gi|294786920|ref|ZP_06752174.1| crossover junction endodeoxyribonuclease RuvC [Parascardovia
           denticolens F0305]
 gi|315226556|ref|ZP_07868344.1| crossover junction endoribonuclease subunit C [Parascardovia
           denticolens DSM 10105]
 gi|294485753|gb|EFG33387.1| crossover junction endodeoxyribonuclease RuvC [Parascardovia
           denticolens F0305]
 gi|315120688|gb|EFT83820.1| crossover junction endoribonuclease subunit C [Parascardovia
           denticolens DSM 10105]
          Length = 192

 Score =  183 bits (465), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 51/155 (32%), Positives = 80/155 (51%), Gaps = 2/155 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           + I G+DPGL R G GI++      L F+    + S   Q    RL  ++ GL   +  +
Sbjct: 1   MIICGVDPGLTRCGVGIIEAGPSRRLSFIHVDVVRSDPHQPQDARLLTIFNGLCAHMDAY 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P+  ++E+VF  ++    L   QA  +A+++ A   IPVS + P   K AV G G  DK
Sbjct: 61  LPDVVSIERVFAQENRNTVLGTAQAAGLAMVAAAQRGIPVSLHTPTEAKLAVTGNGKADK 120

Query: 124 KQIHMMLKMLMPESFFK-GKDAADALAIAVCHAYH 157
            Q+  M+  ++  +      DAAD+LA+A+CHA  
Sbjct: 121 AQVQTMVAKILSLNAPPSPPDAADSLALAICHALR 155


>gi|157825294|ref|YP_001493014.1| Holliday junction resolvase [Rickettsia akari str. Hartford]
 gi|166233292|sp|A8GM81|RUVC_RICAH RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|157799252|gb|ABV74506.1| Holliday junction resolvase [Rickettsia akari str. Hartford]
          Length = 157

 Score =  183 bits (465), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 58/155 (37%), Positives = 86/155 (55%), Gaps = 2/155 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + ++GIDP L   GW +V      L +++SG I +  +  +  RL  +   L  VI  ++
Sbjct: 1   MIVLGIDPALGSLGWAVVARQLTKLKYLASGIIKTNSKDEIHNRLACINSTLEKVILEYQ 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P  AA+E+ FVN ++V +LKLG AR   +       + + E+ PNT+KK V G GH +K 
Sbjct: 61  PNMAAIEETFVNTNSVTSLKLGYARGAIMSLCGRYNLDIREFKPNTVKKTVTGYGHAEKD 120

Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAV-CHAYH 157
           QI  M+K+L+P  S     D ADA+AIA  CH   
Sbjct: 121 QILHMIKLLLPGTSLITNSDEADAIAIAYTCHVMR 155


>gi|149194731|ref|ZP_01871826.1| Holliday junction resolvase [Caminibacter mediatlanticus TB-2]
 gi|149135154|gb|EDM23635.1| Holliday junction resolvase [Caminibacter mediatlanticus TB-2]
          Length = 154

 Score =  183 bits (465), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 51/154 (33%), Positives = 80/154 (51%), Gaps = 4/154 (2%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPG  R G+ I++     L  + +G I     + L ++L QL EGL  +++N +
Sbjct: 1   MRILGIDPGTIRCGYAIIESF-PKLKLIDAGFIK-ITEKELQYQLSQLIEGLDLILEN-Q 57

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
            +E A+E +F   +    LKL Q R    L         +EY P  +KKAV G G   K+
Sbjct: 58  IDEVAIEDIFYAYNPKTVLKLAQFRGALSLRILQKHGFFAEYTPLQVKKAVTGNGKAKKE 117

Query: 125 QIHMMLKMLMPESF-FKGKDAADALAIAVCHAYH 157
           Q+  M+K ++      K  D  DA+A+A+ H+  
Sbjct: 118 QVAFMVKRILGIKGDIKPLDITDAIAVAITHSQR 151


>gi|15618531|ref|NP_224817.1| Holliday junction resolvase [Chlamydophila pneumoniae CWL029]
 gi|15836153|ref|NP_300677.1| Holliday junction resolvase [Chlamydophila pneumoniae J138]
 gi|16752419|ref|NP_444678.1| Holliday junction resolvase [Chlamydophila pneumoniae AR39]
 gi|33241978|ref|NP_876919.1| Holliday junction resolvase [Chlamydophila pneumoniae TW-183]
 gi|6685954|sp|Q9Z7T3|RUVC_CHLPN RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|4376918|gb|AAD18760.1| Crossover Junction Endonuclease [Chlamydophila pneumoniae CWL029]
 gi|7189061|gb|AAF38009.1| Holliday junction resolvase [Chlamydophila pneumoniae AR39]
 gi|8978993|dbj|BAA98828.1| crossover junction endonuclease [Chlamydophila pneumoniae J138]
 gi|33236488|gb|AAP98576.1| RuvC [Chlamydophila pneumoniae TW-183]
          Length = 168

 Score =  183 bits (465), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 59/160 (36%), Positives = 85/160 (53%), Gaps = 4/160 (2%)

Query: 7   IIGIDPGLRRTGWGIVDVAGD-NLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           IIG+DPG    G+ I+ V     L   S G I       L  R   L+E L+ V+ + +P
Sbjct: 5   IIGVDPGTIVAGYAIIAVEQRYQLRPYSYGAIRLSSDMPLPMRYKTLFEQLSGVLDDTQP 64

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
               +E  FVNK+  +T+KL  AR I +L+ A   I + EYAPN  KKAV+G GH  K+Q
Sbjct: 65  NAMVLETQFVNKNPQSTMKLAMARGIVLLAAAQRDILIFEYAPNVAKKAVVGKGHASKRQ 124

Query: 126 IHMMLKMLMPESF---FKGKDAADALAIAVCHAYHANSGY 162
           + +M+  ++          +D ADA A+A+CH + A S  
Sbjct: 125 VQVMVSKILNVPEVLHPSNEDIADAFALAICHTHVARSPL 164


>gi|310823012|ref|YP_003955370.1| crossover junction endodeoxyribonuclease ruvc [Stigmatella
           aurantiaca DW4/3-1]
 gi|309396084|gb|ADO73543.1| Crossover junction endodeoxyribonuclease RuvC [Stigmatella
           aurantiaca DW4/3-1]
          Length = 194

 Score =  183 bits (465), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 59/159 (37%), Positives = 88/159 (55%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M   +R++G+DPG R  G+G+V+     L  +  G I       L  RL  L+  LT ++
Sbjct: 1   MESHLRVLGVDPGSRFMGYGVVEERRGQLVHLGHGVIKVDPEAPLHQRLMVLHVELTAML 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
           K +RPE  AVE VF  ++A + L LG AR +A+L+ A A + V EYAP  +K++V   G 
Sbjct: 61  KKYRPESVAVEGVFTFRNARSALVLGHARGVALLAAAQAGLSVHEYAPARVKRSVGAGGA 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHAN 159
             K+ I  M+  L+     +  DA+DALA+A+CH     
Sbjct: 121 SGKESIARMVCSLLKLEAIERADASDALAVALCHLNQGR 159


>gi|269792534|ref|YP_003317438.1| crossover junction endodeoxyribonuclease RuvC [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100169|gb|ACZ19156.1| crossover junction endodeoxyribonuclease RuvC [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 165

 Score =  183 bits (465), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 51/164 (31%), Positives = 82/164 (50%), Gaps = 1/164 (0%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M + +  +GIDPG+   G+G+V   G +L     G I +    SL  RL  L+  L   +
Sbjct: 1   MPRDLLCLGIDPGIGTLGYGLVRQRGGDLSAEGYGAIHTPPGLSLPERLSCLFGSLEGEL 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
              RP+  AVE+++  ++      + QAR + +L  +   +PV E  P+ +K AV G G 
Sbjct: 61  GGVRPDLVAVERLYFGRNTTTAEMVWQARGVVLLFASRLGVPVLEPKPSEVKMAVCGYGG 120

Query: 121 GDKKQIHMMLKMLMPESF-FKGKDAADALAIAVCHAYHANSGYY 163
            DK+Q+ +M+  L+         D ADALA+A+        GY+
Sbjct: 121 ADKRQVQLMVTGLLGLKRCPSPDDVADALAVAIAGLSMCIGGYW 164


>gi|21674482|ref|NP_662547.1| Holliday junction resolvase [Chlorobium tepidum TLS]
 gi|27923852|sp|Q8KBW8|RUVC_CHLTE RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|21647671|gb|AAM72889.1| Holliday junction resolvase [Chlorobium tepidum TLS]
          Length = 186

 Score =  183 bits (465), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 55/159 (34%), Positives = 80/159 (50%), Gaps = 1/159 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + ++GIDPG R+TG+G++         +  G +      +L  R+ QL  GL +VI+  +
Sbjct: 1   MIVLGIDPGSRKTGYGVIAETAAGYRVLGCGLVRPRAADTLHERISQLCAGLDEVIEQLK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           PE  A+E  FV ++  + L LGQ R   + +     +PV EYAP  IK +V G G   K+
Sbjct: 61  PEAVALETAFVGRNVRSALILGQVRGAVLATVMRHSLPVREYAPREIKLSVTGTGSACKE 120

Query: 125 QIHMML-KMLMPESFFKGKDAADALAIAVCHAYHANSGY 162
           Q+  ML +ML      K  D  DAL IA C      S  
Sbjct: 121 QVAAMLSRMLELGGELKPLDVTDALGIAYCDLARGASSL 159


>gi|94676931|ref|YP_588763.1| crossover junction endodeoxyribonuclease RuvC [Baumannia
           cicadellinicola str. Hc (Homalodisca coagulata)]
 gi|123081487|sp|Q1LTF1|RUVC_BAUCH RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|94220081|gb|ABF14240.1| crossover junction endodeoxyribonuclease RuvC [Baumannia
           cicadellinicola str. Hc (Homalodisca coagulata)]
          Length = 173

 Score =  183 bits (465), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 48/135 (35%), Positives = 79/135 (58%), Gaps = 1/135 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           ++GIDPG R TG+G++   G  L +++SG I +        RL ++Y  +  VI  ++P 
Sbjct: 4   VLGIDPGSRITGYGVICKQGKILSYLASGCIRT-KTNDFPNRLKRIYIDVNQVITQFKPL 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQ+F+ K+  + LKL QAR++AI+      IPV EYA   +KK ++G+G  DK Q+
Sbjct: 63  VFAIEQLFIAKNMNSALKLSQARSVAIVVAMNNNIPVFEYAARQVKKTLVGIGSADKHQV 122

Query: 127 HMMLKMLMPESFFKG 141
             M++ ++  S    
Sbjct: 123 KHMVRTILNLSNNPQ 137


>gi|89256281|ref|YP_513643.1| Holliday junction resolvase [Francisella tularensis subsp.
           holarctica LVS]
 gi|115314733|ref|YP_763456.1| Holliday junction resolvase [Francisella tularensis subsp.
           holarctica OSU18]
 gi|156502347|ref|YP_001428412.1| Holliday junction resolvase [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|167011089|ref|ZP_02276020.1| holliday junction endodeoxyribonuclease [Francisella tularensis
           subsp. holarctica FSC200]
 gi|254367616|ref|ZP_04983637.1| holliday junction endodeoxyribonuclease [Francisella tularensis
           subsp. holarctica 257]
 gi|254369264|ref|ZP_04985276.1| holliday junction endodeoxyribonuclease [Francisella tularensis
           subsp. holarctica FSC022]
 gi|290953116|ref|ZP_06557737.1| Holliday junction resolvase [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295313644|ref|ZP_06804228.1| Holliday junction resolvase [Francisella tularensis subsp.
           holarctica URFT1]
 gi|122325246|sp|Q0BM65|RUVC_FRATO RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|122999753|sp|Q2A3Q9|RUVC_FRATH RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|166233192|sp|A7NBV3|RUVC_FRATF RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|89144112|emb|CAJ79369.1| holliday junction endodeoxyribonuclease [Francisella tularensis
           subsp. holarctica LVS]
 gi|115129632|gb|ABI82819.1| crossover junction endodeoxyribonuclease [Francisella tularensis
           subsp. holarctica OSU18]
 gi|134253427|gb|EBA52521.1| holliday junction endodeoxyribonuclease [Francisella tularensis
           subsp. holarctica 257]
 gi|156252950|gb|ABU61456.1| crossover junction endodeoxyribonuclease [Francisella tularensis
           subsp. holarctica FTNF002-00]
 gi|157122214|gb|EDO66354.1| holliday junction endodeoxyribonuclease [Francisella tularensis
           subsp. holarctica FSC022]
          Length = 171

 Score =  182 bits (464), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 66/165 (40%), Positives = 105/165 (63%), Gaps = 2/165 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + I+GIDPG R TG+G++ V  + + +V+SG I      +   RL Q+ +G+T +I  + 
Sbjct: 1   MVILGIDPGSRITGFGVIKVQDNKIYYVASGCIQ-ITEITTPKRLKQIADGITQIINIYA 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P EAA+EQ+F+ ++ +  +KLGQAR +A+ + A+  + VSEY+   IK+AV+G G   K 
Sbjct: 60  PTEAAIEQIFMFQNPMGAIKLGQARGVAMCTLAINNLEVSEYSAKQIKQAVVGTGGAAKS 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQD 169
           Q+  M++ L+  S    +DAADALAIA+CH YH++    KI+   
Sbjct: 120 QVQHMVQSLLGLSKKPPEDAADALAIAICH-YHSSKSLAKISGAS 163


>gi|239978433|ref|ZP_04700957.1| Holliday junction resolvase [Streptomyces albus J1074]
 gi|291450329|ref|ZP_06589719.1| holliday junction resolvase [Streptomyces albus J1074]
 gi|291353278|gb|EFE80180.1| holliday junction resolvase [Streptomyces albus J1074]
          Length = 190

 Score =  182 bits (464), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 59/156 (37%), Positives = 87/156 (55%), Gaps = 2/156 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVD-VAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G G+VD VAG  L  V  G I +        RL  +  G+   +   
Sbjct: 1   MRVLGVDPGLTRCGIGVVDGVAGRTLTMVGVGVIRTPAEAETPDRLVAVEAGIEAWLDEH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RPE  AVE+VF   +    +   QA A+A+L  A   +PV+ + P+ +K AV G G  +K
Sbjct: 61  RPERVAVERVFSQHNVRTVMGTAQASAVAMLCAARRGLPVALHTPSEVKAAVTGSGRAEK 120

Query: 124 KQIHMMLKMLM-PESFFKGKDAADALAIAVCHAYHA 158
            Q+  M+  L+  ++  K  DAADALA+A+CH + A
Sbjct: 121 DQVGAMVTRLLRLDAPPKPADAADALALAICHIWRA 156


>gi|121612651|ref|YP_001001372.1| Holliday junction resolvase [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|166233186|sp|A1W1Y1|RUVC_CAMJJ RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|121504188|gb|EAQ71982.2| crossover junction endodeoxyribonuclease RuvC [Campylobacter jejuni
           subsp. jejuni 81-176]
          Length = 160

 Score =  182 bits (464), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 50/153 (32%), Positives = 77/153 (50%), Gaps = 2/153 (1%)

Query: 4   SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +++I+GIDPG R  G+ I++        + +G I       L +++ +L EGL  + KN 
Sbjct: 2   NLKILGIDPGSRNCGYAIMEANKGKNILIEAGLIKIKPST-LQYQITELCEGLDLIFKNH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
             +E A+E +F   +    LKL Q R    L         +EY P  +KKAV G     K
Sbjct: 61  SFDEVAIEDIFFAYNPKTVLKLAQFRGALSLKILQIHGDFAEYTPLQVKKAVTGKAKATK 120

Query: 124 KQIHMMLKMLMPESF-FKGKDAADALAIAVCHA 155
           +Q+  M+K L+  S   K  D  DA+A+A+ HA
Sbjct: 121 EQVAFMVKRLLGLSKDIKPLDITDAIAVALTHA 153


>gi|208779420|ref|ZP_03246766.1| crossover junction endodeoxyribonuclease RuvC [Francisella novicida
           FTG]
 gi|208745220|gb|EDZ91518.1| crossover junction endodeoxyribonuclease RuvC [Francisella novicida
           FTG]
          Length = 171

 Score =  182 bits (464), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 67/165 (40%), Positives = 106/165 (64%), Gaps = 2/165 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + I+GIDPG R TG+G++ V  + + +V+SG I      + A RL Q+ +G+T +I  + 
Sbjct: 1   MVILGIDPGSRITGFGVIKVQDNKIYYVASGCIR-ITEITTAKRLKQIADGITQIINIYA 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P EAA+EQ+F+ ++ +  +KLGQAR +A+ + A+  + VSEY+   IK+AV+G G   K 
Sbjct: 60  PTEAAIEQIFMFQNPMGAIKLGQARGVAMCTLAINNLEVSEYSAKQIKQAVVGTGGAAKS 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQD 169
           Q+  M++ L+  S    +DAADALAIA+CH YH++    KI+   
Sbjct: 120 QVQHMVQSLLGLSKKPPEDAADALAIAICH-YHSSKSLAKISGAS 163


>gi|167627793|ref|YP_001678293.1| Holliday junction resolvase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|189046067|sp|B0TZD9|RUVC_FRAP2 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|167597794|gb|ABZ87792.1| Crossover junction endodeoxyribonuclease [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
          Length = 171

 Score =  182 bits (463), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 68/165 (41%), Positives = 106/165 (64%), Gaps = 2/165 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + I+GIDPG R TG+GI+ +  + L +V+SG I        A RL Q+ +G+T+V+  + 
Sbjct: 1   MVILGIDPGSRITGFGIIKIHDNKLYYVASGCIR-ITETGTARRLKQIADGITEVVNTYA 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P E+A+EQ+F+ ++  A LKLGQAR +A+ + A+  + VSEY+   IK+AV+G G   K 
Sbjct: 60  PTESAIEQIFMFQNPGAALKLGQARGVAMCTLAINNLEVSEYSAKQIKQAVVGTGGAAKS 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQD 169
           Q+  M++ ++  S    +DAADALAIA+CH YH++    +IA   
Sbjct: 120 QVQHMVQSILGLSKKPPEDAADALAIAICH-YHSSKSLARIAGAS 163


>gi|328950609|ref|YP_004367944.1| Crossover junction endodeoxyribonuclease ruvC [Marinithermus
           hydrothermalis DSM 14884]
 gi|328450933|gb|AEB11834.1| Crossover junction endodeoxyribonuclease ruvC [Marinithermus
           hydrothermalis DSM 14884]
          Length = 163

 Score =  182 bits (463), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 44/158 (27%), Positives = 81/158 (51%), Gaps = 1/158 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + ++G+DPG+   G G+V+  G    F+    + +   +    R+ ++Y  +  V++ +R
Sbjct: 1   MIVLGVDPGITNMGLGVVEGDGPKARFLHGELVRTRHGEPAPKRVGRIYRAVRGVLEAYR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           PE  AVE  +  +      ++G A    +++   A +PV  Y P  +K+A++G G  DK 
Sbjct: 61  PEAVAVEGQYFYRQNELAYRVGWAMGAVLVAADEAGLPVFAYGPMQVKQALVGTGRADKA 120

Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHANSG 161
           Q+  M++ ++      K    ADALAIA+ H  H  +G
Sbjct: 121 QVAYMVRAILNLREAPKVSHVADALAIALTHLAHLRTG 158


>gi|269837238|ref|YP_003319466.1| crossover junction endodeoxyribonuclease RuvC [Sphaerobacter
           thermophilus DSM 20745]
 gi|269786501|gb|ACZ38644.1| crossover junction endodeoxyribonuclease RuvC [Sphaerobacter
           thermophilus DSM 20745]
          Length = 168

 Score =  182 bits (463), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 44/134 (32%), Positives = 77/134 (57%), Gaps = 1/134 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+G+DPG    G+G+V V  D    +  G + +   + +  RL +LYEGL+ +++   P+
Sbjct: 8   ILGVDPGTALLGYGLV-VGNDEPLALEYGVLSTPSSERMPARLLKLYEGLSTLLRRHAPD 66

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
              +E++F +++    L +GQAR + +L+ A A +PV EY P  +K+AV G G  DK Q+
Sbjct: 67  VVVIEELFFSRNVTTALSVGQARGVVLLAAAQAGVPVVEYKPAEVKQAVAGYGKADKAQM 126

Query: 127 HMMLKMLMPESFFK 140
             M+++L+      
Sbjct: 127 QEMVRILLNLDEVP 140


>gi|88800178|ref|ZP_01115746.1| Holliday junction resolvase [Reinekea sp. MED297]
 gi|88777024|gb|EAR08231.1| Holliday junction resolvase [Reinekea sp. MED297]
          Length = 171

 Score =  182 bits (463), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 70/162 (43%), Positives = 104/162 (64%), Gaps = 1/162 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R+TG+G+++  G  + +VSSG I      +LA RL  +Y  ++++I+ + P 
Sbjct: 2   ILGIDPGSRKTGFGLINQHGTRMEYVSSGVIRVHKEPTLADRLDLIYTSVSEIIEQFSPA 61

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ +   + LKLGQAR  AI++   ARI V EYA   +K++V G G+ DK QI
Sbjct: 62  CMAIEQVFMGRGPDSALKLGQARGAAIIAGTQARIDVYEYAARKVKQSVAGNGNADKDQI 121

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
             M+K ++       +DAADALAIA+CHAY+ ++G   IA  
Sbjct: 122 GYMVKSILKLPGVPQEDAADALAIALCHAYN-HTGLVNIAGA 162


>gi|159043652|ref|YP_001532446.1| Holliday junction resolvase [Dinoroseobacter shibae DFL 12]
 gi|189046065|sp|A8LHP8|RUVC_DINSH RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|157911412|gb|ABV92845.1| crossover junction endodeoxyribonuclease RuvC [Dinoroseobacter
           shibae DFL 12]
          Length = 176

 Score =  182 bits (463), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 85/156 (54%), Positives = 108/156 (69%), Gaps = 1/156 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPGLR  GWG++ V G  L  V++G I S     LA RL  LY  LT+V+    
Sbjct: 1   MRVLGIDPGLRNLGWGVISVQGSRLRHVANGQIRSE-GSELAQRLLSLYRQLTEVVAGHA 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ AAVE  FVNKDA  TLKLGQAR IA+L PA A + V+EYAPN +KK+V+GVGH  K+
Sbjct: 60  PDAAAVEHTFVNKDATGTLKLGQARGIALLVPAAAGLEVAEYAPNHVKKSVVGVGHAAKE 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           Q+  M+K+ +P     G DAADALAIA+CHA+H  S
Sbjct: 120 QVQHMVKLQLPGVVLAGADAADALAIAICHAHHLQS 155


>gi|289209178|ref|YP_003461244.1| crossover junction endodeoxyribonuclease RuvC [Thioalkalivibrio sp.
           K90mix]
 gi|288944809|gb|ADC72508.1| crossover junction endodeoxyribonuclease RuvC [Thioalkalivibrio sp.
           K90mix]
          Length = 171

 Score =  182 bits (463), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 63/165 (38%), Positives = 95/165 (57%), Gaps = 1/165 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPG R TG+ +++ A         G I    +     RL +++ G+ +VI   +
Sbjct: 1   MRILGIDPGSRITGFAVIEYAKGQGRSRGHGVIRPRSKG-FPERLGEIFAGVVEVIGELK 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  A+E VFV ++A + +KLG AR  AI +   A +PV EYAP  IK AV+GVG  DK+
Sbjct: 60  PDVLAIETVFVARNAQSAIKLGHARGAAICAATQAGLPVHEYAPRAIKMAVVGVGSADKE 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQD 169
           Q+  M++ L+  +     DAADALA+A+CHA+ A        +  
Sbjct: 120 QVQHMMQQLLRLTEPASSDAADALAVALCHAHTAQHQARLAGAAS 164


>gi|213421205|ref|ZP_03354271.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
          Length = 166

 Score =  182 bits (463), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 47/128 (36%), Positives = 77/128 (60%), Gaps = 1/128 (0%)

Query: 14  LRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQV 73
            R TG+G++   G  L ++ SG I + V   L  RL  +Y G+T++I  ++P+  A+EQV
Sbjct: 4   SRITGYGVIRQVGRQLTYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQPDYFAIEQV 62

Query: 74  FVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKML 133
           F+ K+A + LKLGQAR +AI++     +PV EYA   +K+ V+G+G  +K Q+  M++ L
Sbjct: 63  FMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQVQHMVRTL 122

Query: 134 MPESFFKG 141
           +       
Sbjct: 123 LKLPANPQ 130


>gi|254490135|ref|ZP_05103326.1| crossover junction endodeoxyribonuclease RuvC [Methylophaga
           thiooxidans DMS010]
 gi|224464621|gb|EEF80879.1| crossover junction endodeoxyribonuclease RuvC [Methylophaga
           thiooxydans DMS010]
          Length = 178

 Score =  182 bits (462), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 56/135 (41%), Positives = 86/135 (63%), Gaps = 1/135 (0%)

Query: 6   RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           RI+GIDPG R+TG+GI+++ G  +  V +G +        A RL Q++EGLTD+I  ++P
Sbjct: 3   RILGIDPGSRKTGFGIIELDGKKIKHVINGRL-MVGDGEFADRLKQIFEGLTDLIDRYQP 61

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
           E  A+E+VF++K+A + LKLGQAR  AI +     + V+EY+   IKKAV+G GH  K Q
Sbjct: 62  EMMAIEKVFLHKNADSALKLGQARGAAICAAVSKDLAVAEYSATQIKKAVVGNGHAKKDQ 121

Query: 126 IHMMLKMLMPESFFK 140
           +  M+ +++      
Sbjct: 122 VQYMMSVILSLPEVP 136


>gi|109947765|ref|YP_664993.1| Holliday junction resolvase [Helicobacter acinonychis str. Sheeba]
 gi|123173314|sp|Q17WI2|RUVC_HELAH RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|109714986|emb|CAJ99994.1| crossover junction endodeoxyribonuclease [Helicobacter acinonychis
           str. Sheeba]
          Length = 157

 Score =  182 bits (462), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 49/154 (31%), Positives = 78/154 (50%), Gaps = 2/154 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + I+GIDPG R+ G+ I+  A + L  +++G I       L  ++  L E L  ++  + 
Sbjct: 1   MHILGIDPGSRKCGYAIISYASNKLSLITAGFIN-ITTTHLQEQILDLIEALDCLLDRYE 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
             E A+E +F   +  + +KL Q R    L         SEY P  +KKA+ G G   K+
Sbjct: 60  VHEVAIEDIFFGYNPKSVIKLAQFRGALSLKILERVGNFSEYTPLQVKKALTGNGKAAKE 119

Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYH 157
           Q+  M+K L+   S  K  D +DA+A+A+ HA  
Sbjct: 120 QVAFMVKRLLHITSEIKPLDISDAIAVAIMHAQR 153


>gi|85712317|ref|ZP_01043368.1| Holliday junction resolvasome, endonuclease subunit [Idiomarina
           baltica OS145]
 gi|85693944|gb|EAQ31891.1| Holliday junction resolvasome, endonuclease subunit [Idiomarina
           baltica OS145]
          Length = 179

 Score =  182 bits (462), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 68/158 (43%), Positives = 104/158 (65%), Gaps = 4/158 (2%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIV----SCVRQSLAFRLCQLYEGLTDVIKN 62
           I+GIDPG R TG+GI+   G +L +++SG I     +    SLA +L +++  + ++I  
Sbjct: 4   ILGIDPGSRLTGFGIIQQQGRHLSYIASGCIRVTGTTAQPLSLAEKLKRIHNSVVELITQ 63

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
           ++P+E A+EQVF+ ++  + LKLGQAR  AI++ A A +PV+EY+   IK+AV+G G  D
Sbjct: 64  YQPDEFAIEQVFMARNPDSALKLGQARGAAIVAAACADLPVAEYSARQIKQAVVGNGGAD 123

Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           K Q+  M+  L+  S     DAADALA+A+CHA+ A S
Sbjct: 124 KTQVQHMVMALLNLSKSPQADAADALAVALCHAHSAQS 161


>gi|34558502|ref|NP_908317.1| Holliday junction resolvase [Wolinella succinogenes DSM 1740]
 gi|44888363|sp|Q7M7L1|RUVC_WOLSU RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|34481796|emb|CAE11217.1| CROSSOVER JUNCTION ENDODEOXYRIBONUCLEASE [Wolinella succinogenes]
          Length = 162

 Score =  182 bits (462), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 48/155 (30%), Positives = 74/155 (47%), Gaps = 3/155 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           + I+GIDPG R  G+ I+          V +G I     ++L  ++ +  EG+  V+KN 
Sbjct: 1   MNILGIDPGSRNCGYAILHHDPKKGNRLVEAGLIK-IKERTLQHQILEFVEGIDLVLKNH 59

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
             +E A+E +F   +    +KL Q R    L          EY P  +KKA+ G G  DK
Sbjct: 60  SIDEVAIEDIFYAYNPKTVIKLAQFRGALSLKILQDLGNFYEYTPLQVKKALTGHGKADK 119

Query: 124 KQIHMMLKMLMPES-FFKGKDAADALAIAVCHAYH 157
            Q+  M+K L+      K  D  DA+A+A+ H+  
Sbjct: 120 SQVAFMVKRLLGLKGEIKPLDITDAIAVAITHSQR 154


>gi|121998990|ref|YP_001003777.1| Holliday junction resolvase [Halorhodospira halophila SL1]
 gi|166233197|sp|A1WZ63|RUVC_HALHL RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|121590395|gb|ABM62975.1| crossover junction endodeoxyribonuclease RuvC [Halorhodospira
           halophila SL1]
          Length = 167

 Score =  182 bits (462), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 59/135 (43%), Positives = 85/135 (62%), Gaps = 1/135 (0%)

Query: 6   RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           RI+GIDPG R TG+GIVD  G     V+ GT+    +  LA RL ++++GL ++I   RP
Sbjct: 3   RILGIDPGSRVTGYGIVD-DGRPTRLVTEGTLRLPRQAGLAERLGRIFDGLAELIAEHRP 61

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
           +E A+EQVFV+++A   LKLG AR  A+ +   A +PV+EYAP  IK+A+ G G  DK Q
Sbjct: 62  QEVALEQVFVHRNADTALKLGHARGAALTACVQAGLPVAEYAPARIKQAIAGSGRADKTQ 121

Query: 126 IHMMLKMLMPESFFK 140
           +  M++ L+      
Sbjct: 122 VGYMVRALLRLRTSP 136


>gi|260427415|ref|ZP_05781394.1| crossover junction endodeoxyribonuclease RuvC [Citreicella sp.
           SE45]
 gi|260421907|gb|EEX15158.1| crossover junction endodeoxyribonuclease RuvC [Citreicella sp.
           SE45]
          Length = 162

 Score =  182 bits (462), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 70/131 (53%), Positives = 93/131 (70%), Gaps = 1/131 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPGLRR GWGI++  G  L  V++G   S     LA RL  ++  LT+V++ + 
Sbjct: 1   MRVLGIDPGLRRLGWGIIEAEGSRLRHVANGVCESGTG-ELAVRLLSIHRQLTEVLRQYA 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ AAVEQ FVNKDA  TLKLGQAR IA+L PA   + V EYAPN++KK V+GVGH DK+
Sbjct: 60  PDVAAVEQTFVNKDAAGTLKLGQARGIALLVPAQFGLEVGEYAPNSVKKTVVGVGHADKR 119

Query: 125 QIHMMLKMLMP 135
           Q+  M+KM +P
Sbjct: 120 QVDHMVKMQLP 130


>gi|92113969|ref|YP_573897.1| crossover junction endodeoxyribonuclease RuvC [Chromohalobacter
           salexigens DSM 3043]
 gi|123084055|sp|Q1QWG0|RUVC_CHRSD RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|91797059|gb|ABE59198.1| crossover junction endodeoxyribonuclease RuvC [Chromohalobacter
           salexigens DSM 3043]
          Length = 186

 Score =  182 bits (462), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 59/134 (44%), Positives = 82/134 (61%), Gaps = 1/134 (0%)

Query: 8   IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEE 67
           +GIDPG R TG+G+VDVA     +V+SG I     Q LA +L Q+Y G+ ++I   RP E
Sbjct: 11  LGIDPGSRITGYGVVDVATPTPRYVASGCIRIKSDQ-LAQKLAQVYAGIGELIGLHRPHE 69

Query: 68  AAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIH 127
            A+EQVF++K+A + LKLGQAR  AI+  A   + V EYAP  IK+AV G G   K+Q+ 
Sbjct: 70  IAIEQVFMSKNADSALKLGQARGTAIVCAANHGLEVFEYAPTQIKQAVTGTGAATKEQVQ 129

Query: 128 MMLKMLMPESFFKG 141
            M+  ++       
Sbjct: 130 HMVTAILGLDGVPQ 143


>gi|257784698|ref|YP_003179915.1| crossover junction endodeoxyribonuclease RuvC [Atopobium parvulum
           DSM 20469]
 gi|257473205|gb|ACV51324.1| crossover junction endodeoxyribonuclease RuvC [Atopobium parvulum
           DSM 20469]
          Length = 167

 Score =  181 bits (461), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 45/139 (32%), Positives = 76/139 (54%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + I+GIDPGL  TGWGIV+  G      + G I +   + +  RL ++Y  + DVI  + 
Sbjct: 1   MVILGIDPGLAHTGWGIVETRGSECRARAYGCITTTADEPIDMRLGRIYNQIIDVIDKFS 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           PE  ++E ++  ++  + +    AR  AI++ + A + V EY P  IK+AV+G G  DK+
Sbjct: 61  PEALSIESIYFGQNVKSAIPTAHARGAAIVACSKAGLTVGEYTPMQIKQAVVGTGAADKQ 120

Query: 125 QIHMMLKMLMPESFFKGKD 143
           Q+  M++ ++        D
Sbjct: 121 QVMYMVQNILCLDHQPHPD 139


>gi|32266610|ref|NP_860642.1| Holliday junction resolvase [Helicobacter hepaticus ATCC 51449]
 gi|44888423|sp|Q7VH56|RUVC_HELHP RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|32262661|gb|AAP77708.1| holliday junction resolvase RuvC [Helicobacter hepaticus ATCC
           51449]
          Length = 185

 Score =  181 bits (461), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 51/156 (32%), Positives = 80/156 (51%), Gaps = 4/156 (2%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAG--DNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
           + I+GIDPG R  G+ I++ A   ++L  + +G I     + L  ++ +  EG+  VIKN
Sbjct: 1   MHILGIDPGSRNCGYAIINYAPHVNSLKLIEAGIIK-IKERDLQTQIMEFVEGIDLVIKN 59

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
              +E A+E +F   +  + +KL Q R    L         SEY P  +KKA+ G G  D
Sbjct: 60  IHIDEVAIEDIFFAYNPQSVIKLAQFRGALSLKILQEIGNFSEYTPLQVKKAITGNGKAD 119

Query: 123 KKQIHMMLKMLMPES-FFKGKDAADALAIAVCHAYH 157
           K Q+  M+K ++      K  D  DA+AIA+ H+  
Sbjct: 120 KTQVAFMVKRILGLKGEIKPLDITDAIAIAITHSQR 155


>gi|302338525|ref|YP_003803731.1| crossover junction endodeoxyribonuclease RuvC [Spirochaeta
           smaragdinae DSM 11293]
 gi|301635710|gb|ADK81137.1| crossover junction endodeoxyribonuclease RuvC [Spirochaeta
           smaragdinae DSM 11293]
          Length = 167

 Score =  181 bits (461), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 42/135 (31%), Positives = 77/135 (57%)

Query: 6   RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           RI+G+DPG   TGWG+V+  G+    V  G I +  ++ + FRL  +Y+ +  +++ +RP
Sbjct: 3   RILGLDPGFAETGWGVVEAEGNRFRHVDHGAIRTKAKEQVGFRLSSIYDAVKSLVEQYRP 62

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
           E   +E+++  K+  + L + QAR + +L      I    Y+P  IK+ + GVG  DK+Q
Sbjct: 63  ECCGIEELYFAKNITSALPVAQARGVLLLVLEQHSIVTESYSPPLIKQTITGVGRADKRQ 122

Query: 126 IHMMLKMLMPESFFK 140
           +  M+++L+  +   
Sbjct: 123 VQEMVRLLLGLTEIP 137


>gi|146277277|ref|YP_001167436.1| Holliday junction resolvase [Rhodobacter sphaeroides ATCC 17025]
 gi|166233291|sp|A4WRW7|RUVC_RHOS5 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|145555518|gb|ABP70131.1| crossover junction endodeoxyribonuclease RuvC [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 168

 Score =  181 bits (461), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 84/157 (53%), Positives = 109/157 (69%), Gaps = 1/157 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPGLR  GWG++DV+G  L  V++G   S     LA RL  L+  LTD++  + 
Sbjct: 1   MRVLGIDPGLRNMGWGVIDVSGTRLAHVANGICHSDSG-DLAQRLLSLHRQLTDILARFA 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ AAVE  FVNKD VATLKLGQAR IA+L PA A + V EYAPN +KK V+GVGH  K+
Sbjct: 60  PDTAAVEHTFVNKDGVATLKLGQARGIALLVPAQAGLAVGEYAPNAVKKTVVGVGHAAKE 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSG 161
           QI  M+++ +P     G DAADALA+A+CHA+H  S 
Sbjct: 120 QIQHMVRLHLPGVELAGADAADALAVAICHAHHVQSS 156


>gi|313683668|ref|YP_004061406.1| crossover junction endodeoxyribonuclease ruvc [Sulfuricurvum
           kujiense DSM 16994]
 gi|313156528|gb|ADR35206.1| crossover junction endodeoxyribonuclease RuvC [Sulfuricurvum
           kujiense DSM 16994]
          Length = 165

 Score =  181 bits (461), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 46/154 (29%), Positives = 77/154 (50%), Gaps = 2/154 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + I+GIDPG R  G+ IV + G  +  + +G I     +SL +++ Q+ E +  + +   
Sbjct: 1   MNILGIDPGTRNCGYAIVTIDGQKIRLIEAGLIK-IKAESLQYQIPQVAEAIEQLFRIHT 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
            +E A+E +F   +    LKL Q R    L         +EY P  +KKA+ G     K+
Sbjct: 60  IDEVAMEDIFYAHNPKTVLKLAQFRGAITLKLLQEHGMFAEYTPLQVKKALTGKAKAAKE 119

Query: 125 QIHMMLKMLMPES-FFKGKDAADALAIAVCHAYH 157
           Q+  M+K ++  +   K  D  DA+A+A+ HA  
Sbjct: 120 QVAFMVKQILGITKEIKPMDITDAMAVAITHAQR 153


>gi|332670540|ref|YP_004453548.1| crossover junction endodeoxyribonuclease RuvC [Cellulomonas fimi
           ATCC 484]
 gi|332339578|gb|AEE46161.1| crossover junction endodeoxyribonuclease RuvC [Cellulomonas fimi
           ATCC 484]
          Length = 188

 Score =  181 bits (461), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 42/139 (30%), Positives = 70/139 (50%), Gaps = 1/139 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G G+VD   G     V+ G   S V   +  RL  +   L + ++  
Sbjct: 1   MRVLGVDPGLTRCGLGVVDGLPGRRARLVAVGVARSPVDDEVDQRLLTIEAQLEEWLEEH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P+  AVE+VF   +    +   Q   +A+++ A  RIPV+ + P+ +K AV G G  +K
Sbjct: 61  APDAVAVERVFAQHNVRTVMGTAQVAGLAMVAAARRRIPVALHTPSEVKAAVTGNGRAEK 120

Query: 124 KQIHMMLKMLMPESFFKGK 142
            Q+  M++ L+        
Sbjct: 121 AQVQTMVQRLLGLEELPRP 139


>gi|291296389|ref|YP_003507787.1| crossover junction endodeoxyribonuclease RuvC [Meiothermus ruber
           DSM 1279]
 gi|290471348|gb|ADD28767.1| crossover junction endodeoxyribonuclease RuvC [Meiothermus ruber
           DSM 1279]
          Length = 164

 Score =  181 bits (461), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 48/154 (31%), Positives = 79/154 (51%), Gaps = 1/154 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + ++GIDPG+   G G+V+ AG     + +  + +   ++   R+ +LY  +  V   +R
Sbjct: 1   MIVLGIDPGITNLGIGVVEQAGKQTRMLHAEVVKTTHGETAPERVGKLYRAVYQVAAAYR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  AVE+ F  +      K+G A     L      IPV  Y P  +K+A++G G  DK 
Sbjct: 61  PQAIAVEEQFFYRQNELAYKVGWAMGAVFLVADQLEIPVYGYGPPKVKQALVGTGQADKH 120

Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYH 157
           Q+  M++ L+   S  K    ADALAIA+ H ++
Sbjct: 121 QVAYMVRALLGLKSLPKPTHLADALAIALTHCFY 154


>gi|326329832|ref|ZP_08196152.1| crossover junction endodeoxyribonuclease RuvC [Nocardioidaceae
           bacterium Broad-1]
 gi|325952418|gb|EGD44438.1| crossover junction endodeoxyribonuclease RuvC [Nocardioidaceae
           bacterium Broad-1]
          Length = 182

 Score =  181 bits (460), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 42/137 (30%), Positives = 71/137 (51%), Gaps = 1/137 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++GIDPGL R G G+VD + G  L  V  G I +     +  RL  + +G+   I+  
Sbjct: 1   MRVLGIDPGLTRCGMGVVDGSLGRPLSMVDVGVIRTSADLPVWERLVSIEKGIDAWIEEH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RP+  A+E++F   +    +   QA  +A++  A   +PV+ + P+ +K AV G G  DK
Sbjct: 61  RPDAVAIERIFARSNVSTIMGTAQASGLAMVCAARRGLPVALHTPSEVKAAVSGNGRADK 120

Query: 124 KQIHMMLKMLMPESFFK 140
            Q+  M+  ++      
Sbjct: 121 AQVTAMVTRILRLPTPP 137


>gi|220920331|ref|YP_002495632.1| Holliday junction resolvase [Methylobacterium nodulans ORS 2060]
 gi|219944937|gb|ACL55329.1| crossover junction endodeoxyribonuclease RuvC [Methylobacterium
           nodulans ORS 2060]
          Length = 189

 Score =  181 bits (460), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 85/164 (51%), Positives = 115/164 (70%)

Query: 2   RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
            + +RI+GIDPGLRRTGWG++ V G  L FVS G + S     LA RL  L++GL+ V+ 
Sbjct: 4   TEPVRILGIDPGLRRTGWGLITVTGTRLAFVSCGVLTSDGDDDLALRLRDLHDGLSRVVA 63

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
             +P+E AVE+ FVNKDA ATLKLG ARA+A+L PALA +PV+EYA N +KK V+G GH 
Sbjct: 64  AMQPDEVAVEETFVNKDAQATLKLGHARAVALLVPALAGLPVAEYAANLVKKTVVGAGHA 123

Query: 122 DKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
           +K QI  M++ L+P++     DAADALA+A+ HA H  +   ++
Sbjct: 124 EKGQIAAMVRFLLPKADPATADAADALAVAITHAQHRAARAREL 167


>gi|307722079|ref|YP_003893219.1| crossover junction endodeoxyribonuclease RuvC [Sulfurimonas
           autotrophica DSM 16294]
 gi|306980172|gb|ADN10207.1| crossover junction endodeoxyribonuclease RuvC [Sulfurimonas
           autotrophica DSM 16294]
          Length = 158

 Score =  181 bits (460), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 45/154 (29%), Positives = 79/154 (51%), Gaps = 2/154 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + I+GIDPG R  G+ ++ +    +  + +G I     + L F++ Q+ EGL+ + +N  
Sbjct: 1   MTILGIDPGTRNMGYALISLQNGKISLIEAGLIKMKA-EDLQFQIPQMVEGLSRIFENHT 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
            +E A+E +F   +   T+KL Q R   +L          EY    +KKA+ G     K+
Sbjct: 60  IDEVAMEDIFYAHNPATTIKLAQFRGAIMLKLLQEFGQFHEYTALQVKKALTGKAKAQKE 119

Query: 125 QIHMMLKMLMP-ESFFKGKDAADALAIAVCHAYH 157
           Q+  M+K L+  +   K  D +DA+A+A+ H+  
Sbjct: 120 QVAFMVKRLLNIKKEIKPLDISDAMAVAITHSQR 153


>gi|119504257|ref|ZP_01626337.1| Crossover junction endodeoxyribonuclease RuvC [marine gamma
           proteobacterium HTCC2080]
 gi|119459765|gb|EAW40860.1| Crossover junction endodeoxyribonuclease RuvC [marine gamma
           proteobacterium HTCC2080]
          Length = 172

 Score =  181 bits (460), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 63/154 (40%), Positives = 91/154 (59%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R+TG+G++   G    +V+SG I   V Q+L  RL  L+  L  +I  + P+
Sbjct: 4   ILGIDPGSRKTGFGVIRTEGKAAVYVTSGIIRLPVDQALGPRLGVLFSSLNSIIDEFNPD 63

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E+VFV ++  A LKLG AR  A+       + V EYA   IK AV+G G   K+Q+
Sbjct: 64  ELAIEEVFVARNPGAALKLGHARGAAMAVCVHRGMHVYEYAARQIKLAVVGTGAASKEQV 123

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
             M+K+L+       +DAAD LA A+CH + + S
Sbjct: 124 QHMVKVLLKLPAAPKEDAADGLAAALCHLHSSQS 157


>gi|225849642|ref|YP_002729876.1| crossover junction endodeoxyribonuclease RuvC [Persephonella marina
           EX-H1]
 gi|225645877|gb|ACO04063.1| crossover junction endodeoxyribonuclease RuvC [Persephonella marina
           EX-H1]
          Length = 155

 Score =  181 bits (460), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 56/159 (35%), Positives = 85/159 (53%), Gaps = 5/159 (3%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M K+  ++GIDPG   TG+ I  + G     VSSGTI +  ++   FR+  +YE L   I
Sbjct: 1   MGKT--VLGIDPGNYSTGFSIFKITGKKHRLVSSGTIKTSRKKPENFRI--IYESLERTI 56

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             + P+E A+E  F   +    +KLG+ R + +L  A  RIPV EY P  +K A+ G G 
Sbjct: 57  NEFSPDEIALESSFYGNNPQTIIKLGEIRGVILLLSAFYRIPVYEYTPQQVKNAITGYGW 116

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHAN 159
             K+ +++M++ L      +  D ADA+A+  CH    N
Sbjct: 117 AKKEDVYLMVQKLFNIK-PETNDEADAIAVGFCHCLSKN 154


>gi|83592423|ref|YP_426175.1| Holliday junction resolvase [Rhodospirillum rubrum ATCC 11170]
 gi|123739582|sp|Q2RVF7|RUVC_RHORT RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|83575337|gb|ABC21888.1| Crossover junction endodeoxyribonuclease RuvC [Rhodospirillum
           rubrum ATCC 11170]
          Length = 169

 Score =  181 bits (460), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 77/158 (48%), Positives = 112/158 (70%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++G+DPGLR TGWG+++V G+ +  V+ G + S  R SLA RL QL+ G+  V+K + 
Sbjct: 1   MRLLGLDPGLRITGWGVIEVTGNRIGHVADGVVRSDDRLSLAARLAQLHGGIVAVLKAYE 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P EAAVE+ FVN++  +TLKLGQAR   +L+PALA + V+EY P+ +KKAV+G G   K 
Sbjct: 61  PVEAAVEETFVNRNPASTLKLGQARGAVMLAPALAGLVVAEYQPSVVKKAVVGTGGAAKD 120

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGY 162
           Q+ MM++ L+P +  +  DAADALAIA+CHA++     
Sbjct: 121 QVGMMIRTLLPGATLETADAADALAIAICHAHYRAGAL 158


>gi|298293004|ref|YP_003694943.1| crossover junction endodeoxyribonuclease RuvC [Starkeya novella DSM
           506]
 gi|296929515|gb|ADH90324.1| crossover junction endodeoxyribonuclease RuvC [Starkeya novella DSM
           506]
          Length = 179

 Score =  181 bits (460), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 70/138 (50%), Positives = 95/138 (68%)

Query: 2   RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
              IRI+G+DPGLRRTGWG+++  G  L F++ GT++      LA RL  L+  L  VI 
Sbjct: 3   PSPIRIVGLDPGLRRTGWGVIEAIGTKLSFIACGTVLPPEDDDLAARLAYLHTELVRVIS 62

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
              P+EAAVE+ FVN +  +TLKLGQAR + +L+PALA +PVSEYA   +KK V+G G  
Sbjct: 63  VHAPDEAAVEETFVNMNPASTLKLGQARGVVMLTPALAGVPVSEYAALLVKKTVVGAGRA 122

Query: 122 DKKQIHMMLKMLMPESFF 139
           DK QI MM+K+L+P++ F
Sbjct: 123 DKAQIRMMIKVLLPKADF 140


>gi|145295782|ref|YP_001138603.1| Holliday junction resolvase [Corynebacterium glutamicum R]
 gi|140845702|dbj|BAF54701.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 242

 Score =  181 bits (460), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 53/158 (33%), Positives = 86/158 (54%), Gaps = 2/158 (1%)

Query: 3   KSIRIIGIDPGLRRTGWGIVDVAGDNLCF-VSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           + +R++GIDPGL R G  +V        + VS G + +     LA RL +L + + + + 
Sbjct: 25  EGLRVMGIDPGLTRCGLSVVQAGRGRTVYPVSVGVVRTPPDAELAERLLRLSKAVGEWMD 84

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
            + P+  A+E+VF   +    +    A  + IL+ A   +PV  Y P+ +KKA+ G G  
Sbjct: 85  EYTPDVVAIERVFERGNVSTVMNTAHAVGVLILAAAERGLPVHMYTPSEVKKAISGNGRA 144

Query: 122 DKKQIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHA 158
           DKKQ+ +M+  ++      K  DAADAL++AVCH + A
Sbjct: 145 DKKQMTVMITRILGLGEPPKPADAADALSLAVCHCWRA 182


>gi|321472928|gb|EFX83897.1| hypothetical protein DAPPUDRAFT_239450 [Daphnia pulex]
          Length = 165

 Score =  180 bits (459), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 65/158 (41%), Positives = 100/158 (63%)

Query: 3   KSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
           K + ++G+DPGLR TGWG V +    + +  SG I +  +     RL  L++ LT +I+ 
Sbjct: 2   KPMIVLGLDPGLRTTGWGSVFLKDKEVIYQPSGLIKTPEKCPTPERLAYLFQALTTIIRE 61

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
           + PEE +VE+VFVNK+  ++LKL  AR + + +PA+  +PV  YAPN +KKA+ G GH D
Sbjct: 62  YCPEEVSVEEVFVNKNPKSSLKLALARGVVLCAPAVIGLPVFSYAPNYMKKALSGYGHAD 121

Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           K QI   ++ ++       KDAADAL +A+CH+Y  ++
Sbjct: 122 KNQIGWAVQQILKLKTPPQKDAADALGLAICHSYAKST 159


>gi|218888285|ref|YP_002437606.1| Holliday junction resolvase [Desulfovibrio vulgaris str. 'Miyazaki
           F']
 gi|218759239|gb|ACL10138.1| crossover junction endodeoxyribonuclease RuvC [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 197

 Score =  180 bits (459), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 57/158 (36%), Positives = 82/158 (51%), Gaps = 2/158 (1%)

Query: 10  IDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAA 69
           IDPG + TGWG+V      L  V  G I        A RL  L+  L  ++  + P+EAA
Sbjct: 41  IDPGSQCTGWGVVREMSGVLTLVDCGAIR-PKGDDFAARLGHLFRELHALVGRYAPDEAA 99

Query: 70  VEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMM 129
           +E V   ++    LKLGQAR +A+ + A   + V++Y P  IKKA++G G  DK+Q+  M
Sbjct: 100 IENVHAARNVATALKLGQARGVAVAACAAHGVVVADYQPTEIKKALVGTGGADKEQVSFM 159

Query: 130 LKMLMPESFFKGKDAADALAIAVCHAY-HANSGYYKIA 166
           +  ++      G D  DALA AVCH      S   ++ 
Sbjct: 160 VARVLGAKGGWGLDTGDALAAAVCHLNARRLSRLARLG 197


>gi|325914900|ref|ZP_08177233.1| Holliday junction endonuclease RuvC [Xanthomonas vesicatoria ATCC
           35937]
 gi|325538888|gb|EGD10551.1| Holliday junction endonuclease RuvC [Xanthomonas vesicatoria ATCC
           35937]
          Length = 146

 Score =  180 bits (459), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 60/144 (41%), Positives = 85/144 (59%), Gaps = 1/144 (0%)

Query: 6   RIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           RI+GIDPG +RTG GI+DV  G     V    ++       A RL +L  GL ++I+ +R
Sbjct: 3   RILGIDPGSQRTGVGIIDVDEGGRSRHVHHAPLLLLGEGDFAQRLKRLLHGLGELIETYR 62

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+E A+E+VF+ K A + LKLG AR  AI +  +  +PV EYA   IK A++G G  DK 
Sbjct: 63  PDEVAIEKVFMGKSADSALKLGHARGAAICAVVMRDLPVHEYAATEIKLALVGKGGADKV 122

Query: 125 QIHMMLKMLMPESFFKGKDAADAL 148
           Q+  M+ +++        DAADAL
Sbjct: 123 QVQHMVGIMLNLKGKLQADAADAL 146


>gi|91205993|ref|YP_538348.1| Holliday junction resolvase [Rickettsia bellii RML369-C]
 gi|123266180|sp|Q1RHA5|RUVC_RICBR RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|91069537|gb|ABE05259.1| Crossover junction endodeoxyribonuclease RuvC [Rickettsia bellii
           RML369-C]
          Length = 157

 Score =  180 bits (458), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 56/150 (37%), Positives = 84/150 (56%), Gaps = 1/150 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + ++GIDP L   GW +V      L +++SG I +  +  +  RL  +   L  VI  ++
Sbjct: 1   MIVLGIDPALGSLGWAVVAKESAKLKYLASGVIKTSSKDEIHHRLSYINSILEKVILEYK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P  AA+E+ FVN ++V +LKLG AR   +       + + E+ PNTIKK V G GH +K 
Sbjct: 61  PNMAAIEETFVNTNSVTSLKLGYARGAIMSLIGRYDLDMREFKPNTIKKTVTGYGHAEKD 120

Query: 125 QIHMMLKMLMPES-FFKGKDAADALAIAVC 153
           QI  M+K+L+P +      D ADA+AIA  
Sbjct: 121 QILHMIKLLLPGTAAITNSDEADAVAIAYT 150


>gi|256827687|ref|YP_003151646.1| crossover junction endodeoxyribonuclease RuvC [Cryptobacterium
           curtum DSM 15641]
 gi|256583830|gb|ACU94964.1| crossover junction endodeoxyribonuclease RuvC [Cryptobacterium
           curtum DSM 15641]
          Length = 174

 Score =  180 bits (458), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 51/141 (36%), Positives = 79/141 (56%)

Query: 3   KSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
           +S  ++GIDPGL  TGWGIV+  G  L   + G IV+   Q L+ RL ++YE +  VI +
Sbjct: 2   ESRIVMGIDPGLAHTGWGIVNQTGLRLSCEAYGCIVTTAAQPLSSRLNKIYEQIGAVINH 61

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
           +RP    +E ++   +  +    GQAR  A+++ A  +I V EY P+ IK AV+G G  D
Sbjct: 62  YRPACVGIETIWFGNNVTSAFATGQARGAALVACAQGKIQVGEYTPSAIKMAVVGTGSAD 121

Query: 123 KKQIHMMLKMLMPESFFKGKD 143
           K Q+  M+  ++  +     D
Sbjct: 122 KHQVQYMVAQILGLATEPQPD 142


>gi|157803304|ref|YP_001491853.1| Holliday junction resolvase [Rickettsia canadensis str. McKiel]
 gi|157784567|gb|ABV73068.1| Holliday junction resolvase [Rickettsia canadensis str. McKiel]
          Length = 180

 Score =  180 bits (458), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 54/151 (35%), Positives = 88/151 (58%), Gaps = 1/151 (0%)

Query: 4   SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           ++ ++GIDP L   GW +V      L +++SGTI +  +  +  RL  +   L  VI  +
Sbjct: 23  TMIVLGIDPALGSLGWAVVVRQSTKLKYLASGTIKTNSKDEIHHRLAFINITLEKVILEY 82

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +P  AA+E++FVN +++ +LKLG AR + +       + + E+ PN +KK+V G GH +K
Sbjct: 83  QPNMAAIEEIFVNTNSLTSLKLGYARGVIMSLIGRYNLGLREFKPNMVKKSVTGYGHAEK 142

Query: 124 KQIHMMLKMLMPE-SFFKGKDAADALAIAVC 153
           +QI  M+K+L+P  S     D  DA+AIA  
Sbjct: 143 EQILHMIKLLLPGTSLITNSDEGDAIAIAYT 173


>gi|78778298|ref|YP_394613.1| Holliday junction resolvase [Sulfurimonas denitrificans DSM 1251]
 gi|123549501|sp|Q30NQ3|RUVC_SULDN RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|78498838|gb|ABB45378.1| Crossover junction endodeoxyribonuclease RuvC [Sulfurimonas
           denitrificans DSM 1251]
          Length = 159

 Score =  180 bits (458), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 46/154 (29%), Positives = 78/154 (50%), Gaps = 2/154 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + I+GIDPG R+ G+ ++ +    +  + +G I     + L F++ Q+ E    + KN +
Sbjct: 1   MTILGIDPGTRKMGYALISLEKGKIALIEAGLIK-IKAEELQFQIPQMVEAFEGIFKNHK 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
            +E A+E +F   +   T+KL Q R   +L         SEY    +KKA+ G G   K+
Sbjct: 60  IDEVAIEDIFYAHNPKTTIKLAQFRGAIMLMLIQQFGQFSEYTALQVKKALTGNGKATKE 119

Query: 125 QIHMMLKMLMP-ESFFKGKDAADALAIAVCHAYH 157
           Q+  M K L+  +   K  D  DA+A+A+ H+  
Sbjct: 120 QVAFMAKRLLNIKKEIKPLDITDAIAVAITHSQR 153


>gi|282855631|ref|ZP_06264945.1| crossover junction endodeoxyribonuclease RuvC [Pyramidobacter
           piscolens W5455]
 gi|282586561|gb|EFB91815.1| crossover junction endodeoxyribonuclease RuvC [Pyramidobacter
           piscolens W5455]
          Length = 172

 Score =  180 bits (458), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 44/146 (30%), Positives = 80/146 (54%), Gaps = 1/146 (0%)

Query: 8   IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEE 67
           +GIDPG+ R G+G V  +G +   ++ G + +   Q  + R+  LY+G+ + I+N  P  
Sbjct: 11  LGIDPGIGRLGYGFVCQSGSSYRALAYGCLETPPHQDTSVRIKALYDGVREQIENCSPHF 70

Query: 68  AAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIH 127
            +VE+++  ++      + Q R   +L  A  R+P+ E  P+ +K  V G G  +K+Q+ 
Sbjct: 71  MSVERLYFGQNRTTAEAVWQVRGAILLLGAQYRLPIIEPKPSEVKLTVCGDGTAEKRQVQ 130

Query: 128 MMLKMLMPE-SFFKGKDAADALAIAV 152
           +M++ L+      +  D ADAL IA+
Sbjct: 131 LMIQQLLNLPEIPRPDDTADALGIAL 156


>gi|84501644|ref|ZP_00999816.1| Holliday junction nuclease RuvC [Oceanicola batsensis HTCC2597]
 gi|84390265|gb|EAQ02824.1| Holliday junction nuclease RuvC [Oceanicola batsensis HTCC2597]
          Length = 167

 Score =  180 bits (458), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 81/159 (50%), Positives = 108/159 (67%), Gaps = 1/159 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R+IGIDPGLR  GWG++ V+G  +  V++G   +     +A RL  L+  LT V+    
Sbjct: 1   MRVIGIDPGLRSLGWGVISVSGSRISHVANGQ-CAGSGTEMAERLLSLHAALTAVLIEHA 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ AAVEQVFVN +   TLKLGQAR IA+L PA A +PV EYAPNT+KK+V+GVGH  K+
Sbjct: 60  PDAAAVEQVFVNTNGAGTLKLGQARGIALLVPAQAGLPVGEYAPNTVKKSVVGVGHAAKE 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYY 163
           Q+  M+++ +P     G DAADALAIA+CHA+H  S   
Sbjct: 120 QVQHMVRLQLPGVDLSGPDAADALAIAICHAHHLGSAAA 158


>gi|32473246|ref|NP_866240.1| crossover junction endodeoxyribonuclease ruvC [Rhodopirellula
           baltica SH 1]
 gi|44888406|sp|Q7US71|RUVC_RHOBA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|32397925|emb|CAD73926.1| crossover junction endodeoxyribonuclease ruvC [Rhodopirellula
           baltica SH 1]
          Length = 178

 Score =  180 bits (457), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 56/156 (35%), Positives = 86/156 (55%), Gaps = 2/156 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPGL  TG+ ++   G  LC   +G I S    +L  RL +++ GL++V      +
Sbjct: 16  ILGIDPGLNTTGYAVISREGPRLCLREAGVIKSRRSDTLPERLREIHVGLSEVFAVHAVD 75

Query: 67  EAAVEQVFVNKD-AVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
             A+EQ+F + D     + +G AR +  L+ A A +PV  Y P  +KK + G G   K Q
Sbjct: 76  LMALEQLFSHYDRPRTAILMGHARGVICLAAASAGVPVEHYEPTRVKKVMTGNGRAPKSQ 135

Query: 126 IHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHANS 160
           I + +KM +   S  +  D ADA+AI++C  Y AN+
Sbjct: 136 IQLAVKMQLNLQSVPEPADVADAMAISLCGHYLANN 171


>gi|159903678|ref|YP_001551022.1| Holliday junction resolvase [Prochlorococcus marinus str. MIT 9211]
 gi|238687111|sp|A9BB56|RUVC_PROM4 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|159888854|gb|ABX09068.1| Crossover junction endodeoxyribonuclease RuvC [Prochlorococcus
           marinus str. MIT 9211]
          Length = 158

 Score =  180 bits (457), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 51/154 (33%), Positives = 84/154 (54%), Gaps = 2/154 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + I+GIDPGL R G+G++D        +  G I +    +   R+ ++   L  +I  W+
Sbjct: 1   MIILGIDPGLARVGYGLIDCNMTQKKMLDCGIIKTSQDHNDGERMVEITRDLRYLINKWK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ A+VE+ F  +    T+K+ QAR + I++ A  R+P+ E+ P  IK AV G G  +K 
Sbjct: 61  PQIASVEKFFFYRS-STTIKVVQARGVVIMTLARFRVPILEFPPMQIKLAVTGSGKANKD 119

Query: 125 QIHMML-KMLMPESFFKGKDAADALAIAVCHAYH 157
           ++ M + + L      +  DA+DALAIA+   Y 
Sbjct: 120 EVSMAVIRELDLSKPPRPDDASDALAIALTAYYQ 153


>gi|241668353|ref|ZP_04755931.1| Holliday junction resolvase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254876886|ref|ZP_05249596.1| crossover junction endodeoxyribonuclease ruvC [Francisella
           philomiragia subsp. philomiragia ATCC 25015]
 gi|254842907|gb|EET21321.1| crossover junction endodeoxyribonuclease ruvC [Francisella
           philomiragia subsp. philomiragia ATCC 25015]
          Length = 171

 Score =  180 bits (457), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 65/164 (39%), Positives = 104/164 (63%), Gaps = 1/164 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + I+GIDPG R TG+GI+ +  + L +V+SG I        A RL Q+ +G+T+V+  + 
Sbjct: 1   MVILGIDPGSRITGFGIIKIHDNKLYYVASGCIR-ITETGTARRLKQIADGITEVVSTYA 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P E+A+EQ+F+ ++  A LKLGQAR +A+ + A+  + VSEY+   IK+AV+G G   K 
Sbjct: 60  PTESAIEQIFMFQNPGAALKLGQARGVAMCTLAINNLEVSEYSAKQIKQAVVGTGGAAKS 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
           Q+  M++ ++  S    +DAADALAIA+CH + + S    + + 
Sbjct: 120 QVQHMVQSILGLSKKPPEDAADALAIAICHYHSSKSLARIVGAS 163


>gi|67459565|ref|YP_247189.1| Holliday junction resolvase [Rickettsia felis URRWXCal2]
 gi|75536035|sp|Q4UKB1|RUVC_RICFE RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|67005098|gb|AAY62024.1| Crossover junction endodeoxyribonuclease RuvC [Rickettsia felis
           URRWXCal2]
          Length = 156

 Score =  180 bits (457), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 57/155 (36%), Positives = 85/155 (54%), Gaps = 2/155 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + ++GIDP L   GW +V      L +++SG I +  +  +  RL  +   L  VI  ++
Sbjct: 1   MIVLGIDPALGSLGWAVVAKDTAKLKYLASGIIKTNSKDEIHNRLAFINSTLEKVILEYQ 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P  AA+E+ FVN ++V +LKLG AR   +       + + E+ PN +KK V G GH +K 
Sbjct: 61  PNMAAIEETFVNTNSVTSLKLGYARGAIMSLIGRYNLDMREFKPNMVKKTVTGYGHAEKD 120

Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAV-CHAYH 157
           QI  M+K+L+P  S     D ADA+AIA  CH   
Sbjct: 121 QILHMIKLLLPGTSAITNSDEADAVAIAYTCHVMR 155


>gi|87118958|ref|ZP_01074856.1| crossover junction endodeoxyribonuclease RuvC [Marinomonas sp.
           MED121]
 gi|86165349|gb|EAQ66616.1| crossover junction endodeoxyribonuclease RuvC [Marinomonas sp.
           MED121]
          Length = 183

 Score =  180 bits (457), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 69/156 (44%), Positives = 103/156 (66%), Gaps = 1/156 (0%)

Query: 6   RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           RI+ IDPG R TG+GI+DV G  + +V SG I       LA RL  +Y  +T+++  ++P
Sbjct: 3   RILAIDPGSRITGFGIIDVQGQQIQYVDSGCIRLP-DAVLAERLKNIYTNVTELLSRYQP 61

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
            E A+E+VF+ K+A + LKLGQAR  AI++ A+A + V+EYA   +K++V+G G  DK+Q
Sbjct: 62  HEFAIEEVFLAKNANSALKLGQARGAAIVAAAMAGLEVAEYAAKRVKQSVVGSGSADKEQ 121

Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSG 161
           +  M+++L+        DAADALAIA+CHA+   S 
Sbjct: 122 VQQMVQLLLKLEKAPQADAADALAIAMCHAHTRTSS 157


>gi|316932641|ref|YP_004107623.1| crossover junction endodeoxyribonuclease RuvC [Rhodopseudomonas
           palustris DX-1]
 gi|315600355|gb|ADU42890.1| crossover junction endodeoxyribonuclease RuvC [Rhodopseudomonas
           palustris DX-1]
          Length = 173

 Score =  179 bits (456), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 88/159 (55%), Positives = 115/159 (72%)

Query: 3   KSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
           +S+RI+GIDPGLRRTGWG+V+  G+ L +V+ G++       LA RL  +++GL  V+  
Sbjct: 7   RSVRILGIDPGLRRTGWGVVESEGNRLIYVACGSVEPRDTLPLAERLLAIHDGLAKVLAA 66

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
             P EAAVEQ FVNKD  ATLKLGQAR +A+L PA+  + V+EYAPN +KK V+G GH D
Sbjct: 67  HAPAEAAVEQTFVNKDGAATLKLGQARGVAMLVPAMHGLLVAEYAPNLVKKTVVGAGHAD 126

Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSG 161
           K QI MMLK+L+P++  K  DAADALAIA+ HA+H  S 
Sbjct: 127 KTQIQMMLKILLPKAEPKTADAADALAIAITHAHHRVSA 165


>gi|197106546|ref|YP_002131923.1| RuvC [Phenylobacterium zucineum HLK1]
 gi|196479966|gb|ACG79494.1| RuvC [Phenylobacterium zucineum HLK1]
          Length = 170

 Score =  179 bits (456), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 63/136 (46%), Positives = 88/136 (64%)

Query: 3   KSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
           + +RI+G+DPGLRRTGWG+V   G  L  V+ G I    +   A RL  L  G+  +I  
Sbjct: 5   RPVRILGLDPGLRRTGWGVVACEGARLSHVAHGVIAPPDKLPFAERLLVLLSGIEAIIAE 64

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
             P+EAAVE+ FVN +A + LKLG ARA+A+++PA A +PV+EYA   +KKAV+G G  D
Sbjct: 65  HAPDEAAVEETFVNDNARSALKLGHARAMALVAPARAGLPVAEYAATVVKKAVVGTGGAD 124

Query: 123 KKQIHMMLKMLMPESF 138
           K Q+  M+  L+P + 
Sbjct: 125 KAQVGWMIARLLPAAG 140


>gi|187611517|sp|A8F0M4|RUVC_RICM5 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
          Length = 157

 Score =  179 bits (456), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 56/150 (37%), Positives = 85/150 (56%), Gaps = 1/150 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + I+GIDP L   GW +V      L +++SG I +  + ++  RL  +   L  VI  ++
Sbjct: 1   MIILGIDPALGSLGWAVVAKETAQLKYLASGIIKTNSKDAIHHRLAFINSTLEKVILEYQ 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P  AA+E+ FVN ++V +LKLG AR   +       + + E+ PNT+KK V G GH +K 
Sbjct: 61  PNMAAIEETFVNTNSVTSLKLGYARGAIMSLIGRYNLDMREFKPNTVKKTVTGYGHAEKD 120

Query: 125 QIHMMLKMLMPES-FFKGKDAADALAIAVC 153
           QI  M+K+L+P +      D ADA+AIA  
Sbjct: 121 QILHMIKLLLPGTFLITNSDEADAVAIAYT 150


>gi|332708977|ref|ZP_08428947.1| holliday junction endonuclease RuvC [Lyngbya majuscula 3L]
 gi|332352166|gb|EGJ31736.1| holliday junction endonuclease RuvC [Lyngbya majuscula 3L]
          Length = 185

 Score =  179 bits (456), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 51/186 (27%), Positives = 88/186 (47%), Gaps = 32/186 (17%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDN----------------------------LCFV 32
           M K  RI+GIDPGL   G+G +                                  L  +
Sbjct: 1   MEK--RILGIDPGLATLGFGAISCQTTKISKSANTKGSLGVAKPSRQSLIQATLEPLQLL 58

Query: 33  SSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIA 92
             G I +  +     RLC +YE L  ++++ +P+  A+E++F  +    T+ + QAR + 
Sbjct: 59  DFGIIQTPAKTDYGSRLCTIYEDLHTLLEHCQPDLVAIEKLFFYRM-STTISVAQARGVV 117

Query: 93  ILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMML-KMLMPESFFKGKDAADALAIA 151
           +L  A  ++P+ E+ P  IK+A+ G G+ DK ++   + + L  ++  K  D ADALA+A
Sbjct: 118 VLVTAQHQVPMVEFTPGQIKQAMTGYGNADKYEVQQAVMRELNLDTIPKPDDLADALAVA 177

Query: 152 VCHAYH 157
           +   +H
Sbjct: 178 LTAWFH 183


>gi|23308862|ref|NP_600874.2| Holliday junction resolvase [Corynebacterium glutamicum ATCC 13032]
 gi|24638206|sp|Q9AE11|RUVC_CORGL RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|13346822|gb|AAK19838.1|AF331924_3 crossover junction endodeoxyribonuclease RuvC [Corynebacterium
           glutamicum]
 gi|21324431|dbj|BAB99055.1| Holliday junction resolvasome endonuclease subunit [Corynebacterium
           glutamicum ATCC 13032]
          Length = 221

 Score =  179 bits (456), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 53/158 (33%), Positives = 86/158 (54%), Gaps = 2/158 (1%)

Query: 3   KSIRIIGIDPGLRRTGWGIVDVAGDNLCF-VSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           + +R++GIDPGL R G  +V        + VS G + +     LA RL +L + + + + 
Sbjct: 4   EGLRVMGIDPGLTRCGLSVVQAGRGRTVYPVSVGVVRTPPDAELAERLLRLSKAVGEWMD 63

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
            + P+  A+E+VF   +    +    A  + IL+ A   +PV  Y P+ +KKA+ G G  
Sbjct: 64  EYTPDVIAIERVFERGNVSTVMNTAHAVGVLILAAAERGLPVHMYTPSEVKKAISGNGRA 123

Query: 122 DKKQIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHA 158
           DKKQ+ +M+  ++      K  DAADAL++AVCH + A
Sbjct: 124 DKKQMTVMITRILGLGEPPKPADAADALSLAVCHCWRA 161


>gi|242280347|ref|YP_002992476.1| Holliday junction resolvase [Desulfovibrio salexigens DSM 2638]
 gi|242123241|gb|ACS80937.1| crossover junction endodeoxyribonuclease RuvC [Desulfovibrio
           salexigens DSM 2638]
          Length = 168

 Score =  179 bits (456), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 56/159 (35%), Positives = 90/159 (56%), Gaps = 3/159 (1%)

Query: 11  DPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAV 70
           DPG R TG+GIV      +  V +GTI +  ++ +  RL ++Y  + ++IK + P+EAA+
Sbjct: 12  DPGTRVTGYGIVRELSGQVSLVDAGTIRTNTKKPMCSRLGEIYSRIAELIKEYSPDEAAI 71

Query: 71  EQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMML 130
           E  FV  +  + LKLGQAR  A+ + A++ + VS Y P  +K  ++G G  DK Q+  M+
Sbjct: 72  ENAFVASNPASALKLGQARGAAMAACAVSGLVVSGYEPTKVKSNLVGSGRADKSQVAFMV 131

Query: 131 KMLMPESFFK-GKDAADALAIAVCHAYHANSGYYKIASQ 168
           + ++     K   D  DAL IA+CH       + K+A +
Sbjct: 132 ERILGVKNTKWANDTTDALGIAICHLNERR--FAKVAGR 168


>gi|313679885|ref|YP_004057624.1| holliday junction endonuclease ruvc [Oceanithermus profundus DSM
           14977]
 gi|313152600|gb|ADR36451.1| Holliday junction endonuclease RuvC [Oceanithermus profundus DSM
           14977]
          Length = 163

 Score =  179 bits (456), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 49/158 (31%), Positives = 79/158 (50%), Gaps = 1/158 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + ++GIDPG+   G G+V+  G    F+ +  + +      A R+  +YE +   I   R
Sbjct: 1   MVVLGIDPGISNLGLGVVEGDGARARFLHAELVRTRHGDPAAARVGAIYEAVAGAIAEHR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           PE  AVE  F  +      K+G A     L+   A + V +Y P  +K+A++G G  DK+
Sbjct: 61  PEAVAVEAQFFYRQNELAYKVGWAMGAVFLAAGQAGLEVFQYGPMEVKRALVGTGRADKR 120

Query: 125 QIHMMLKMLMPESFFK-GKDAADALAIAVCHAYHANSG 161
           Q+  M++ L+          AADALA+A+ H  H  +G
Sbjct: 121 QVAFMVRALLGLKQTPSSSHAADALAVALTHLAHLRTG 158


>gi|126733601|ref|ZP_01749348.1| crossover junction endodeoxyribonuclease RuvC [Roseobacter sp.
           CCS2]
 gi|126716467|gb|EBA13331.1| crossover junction endodeoxyribonuclease RuvC [Roseobacter sp.
           CCS2]
          Length = 168

 Score =  179 bits (455), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 70/131 (53%), Positives = 91/131 (69%), Gaps = 1/131 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPGLR  GWG+++V+G  L  V++G         LA RL  L++ LT V+   +
Sbjct: 1   MRVLGIDPGLRNMGWGVIEVSGSRLGHVANGVCR-SQGDDLAARLLSLHQQLTAVLTQHQ 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ AAVEQ FVNKD   TLKLGQAR IA+L PA A + V EYAPN +KKAV+GVGH DK 
Sbjct: 60  PQAAAVEQTFVNKDGAGTLKLGQARGIAMLVPAQAGLVVGEYAPNAVKKAVVGVGHADKA 119

Query: 125 QIHMMLKMLMP 135
           QI  M+K+ +P
Sbjct: 120 QIAHMVKVQLP 130


>gi|224418816|ref|ZP_03656822.1| Holliday junction resolvase [Helicobacter canadensis MIT 98-5491]
 gi|253828195|ref|ZP_04871080.1| Holliday junction resolvase [Helicobacter canadensis MIT 98-5491]
 gi|313142335|ref|ZP_07804528.1| crossover junction endodeoxyribonuclease ruvC [Helicobacter
           canadensis MIT 98-5491]
 gi|253511601|gb|EES90260.1| Holliday junction resolvase [Helicobacter canadensis MIT 98-5491]
 gi|313131366|gb|EFR48983.1| crossover junction endodeoxyribonuclease ruvC [Helicobacter
           canadensis MIT 98-5491]
          Length = 160

 Score =  179 bits (455), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 47/154 (30%), Positives = 77/154 (50%), Gaps = 2/154 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + I+GIDPG R  G+ I+ +  ++L  + +G I     + L  ++ +  EG+  V+KN  
Sbjct: 1   MNILGIDPGSRNCGYAIIQMKKESLTLLEAGLIK-IKERILQHQILEFVEGIDLVLKNHL 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
               A+E +F   +    +KL Q R    L         +EY P  +KKA+ G G   K+
Sbjct: 60  INSVAIEDIFYAYNPKTVIKLAQFRGALSLKILQELGNFTEYTPLQVKKALTGNGKAQKE 119

Query: 125 QIHMMLKMLMP-ESFFKGKDAADALAIAVCHAYH 157
           Q+  M+K ++  +   K  D  DA+AIA+ HA  
Sbjct: 120 QVAFMVKRILGIKGEIKPLDITDAIAIAITHAQR 153


>gi|284032306|ref|YP_003382237.1| crossover junction endodeoxyribonuclease RuvC [Kribbella flavida
           DSM 17836]
 gi|283811599|gb|ADB33438.1| crossover junction endodeoxyribonuclease RuvC [Kribbella flavida
           DSM 17836]
          Length = 208

 Score =  179 bits (455), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 55/168 (32%), Positives = 88/168 (52%), Gaps = 3/168 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G GIV+ A G     V+ G I +     +A RL  +  G+   I   
Sbjct: 1   MRVLGVDPGLTRCGLGIVEGAPGRPPKLVAVGVIRTPTDLDVAQRLVLIEAGIEQWIAEH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P+  AVE+VF   +    +   QA  +A++  A   +PV+ + P+ +K AV G G   K
Sbjct: 61  APDAVAVERVFAQHNVRTVMGTAQASGVAMVVAARRGLPVALHTPSEVKAAVTGSGRAGK 120

Query: 124 KQIHMMLKMLMPESF-FKGKDAADALAIAVCHAYH-ANSGYYKIASQD 169
           +Q+  M+  ++         DAADALA+A+CH +  A +   + A+Q 
Sbjct: 121 EQVTSMVTRILQLPERPTPADAADALALAICHVWRGAGTSRRQEAAQS 168


>gi|148927929|ref|ZP_01811335.1| crossover junction endodeoxyribonuclease RuvC [candidate division
           TM7 genomosp. GTL1]
 gi|147886718|gb|EDK72282.1| crossover junction endodeoxyribonuclease RuvC [candidate division
           TM7 genomosp. GTL1]
          Length = 158

 Score =  179 bits (455), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 43/138 (31%), Positives = 73/138 (52%), Gaps = 1/138 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RIIGIDPG    G+G++D        V +G + + V Q L  RL ++Y  +  +I + R
Sbjct: 1   MRIIGIDPGTGILGFGVIDAEQGTTNLVDAGVVRTKVHQPLDERLVEIYGAIQSIIADTR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P   A+E++F  ++    + +  AR +A+L+   A + + EY P  IK+ + G G   KK
Sbjct: 61  PTIMAIERLFFAQNVTTAMSVAHARGVAMLAGKQADLAIHEYTPLQIKQTMTGYGRATKK 120

Query: 125 QIHMMLKMLMPE-SFFKG 141
           QI  M+++ +      K 
Sbjct: 121 QIQEMVRLQLNLVEVPKP 138


>gi|310816585|ref|YP_003964549.1| crossover junction endodeoxyribonuclease RuvC [Ketogulonicigenium
           vulgare Y25]
 gi|308755320|gb|ADO43249.1| crossover junction endodeoxyribonuclease RuvC [Ketogulonicigenium
           vulgare Y25]
          Length = 176

 Score =  179 bits (455), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 86/163 (52%), Positives = 114/163 (69%), Gaps = 1/163 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPGLR  GWG++DV G  +  V++G I       LA RL  L+  LT V + + 
Sbjct: 1   MRVLGIDPGLRNMGWGVIDVQGTRISHVANG-ICHSAGDDLAARLLSLHGQLTRVFETYA 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ AAVE  FVN+DAVATLKLGQARAIA+L PA A + V EYAPN +KKA++GVGH DK 
Sbjct: 60  PDTAAVENTFVNRDAVATLKLGQARAIALLVPAQAGLSVGEYAPNAVKKAIVGVGHADKG 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
           Q+  M+++ +P     G DAADALAIA+CHA+H+ S  +  A+
Sbjct: 120 QVEHMVRLHLPGVKLVGVDAADALAIAICHAHHSQSAGHLQAA 162


>gi|317051310|ref|YP_004112426.1| crossover junction endodeoxyribonuclease RuvC [Desulfurispirillum
           indicum S5]
 gi|316946394|gb|ADU65870.1| crossover junction endodeoxyribonuclease RuvC [Desulfurispirillum
           indicum S5]
          Length = 171

 Score =  179 bits (455), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 43/136 (31%), Positives = 75/136 (55%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + ++GIDPG R TG+GIV+  G+ L   + G I   V      R+  L +GL +V++   
Sbjct: 1   MILLGIDPGTRITGYGIVEARGNQLLHRAHGAIRPPVDLPFPQRMLHLQQGLNEVLREHS 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P    +E+VF+ ++  + LKLG AR + +++     + V E +   IK++V G G   K+
Sbjct: 61  PAHVCIEEVFLAQNPQSALKLGHARGVLMITCLSQGLDVVELSALQIKQSVTGYGKAPKE 120

Query: 125 QIHMMLKMLMPESFFK 140
           Q+  M++ML+  +   
Sbjct: 121 QVGRMVQMLLSLATLP 136


>gi|229586357|ref|YP_002844858.1| Holliday junction resolvase [Rickettsia africae ESF-5]
 gi|259495693|sp|C3PMF5|RUVC_RICAE RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|228021407|gb|ACP53115.1| Crossover junction endodeoxyribonuclease RuvC [Rickettsia africae
           ESF-5]
          Length = 157

 Score =  179 bits (455), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 54/150 (36%), Positives = 84/150 (56%), Gaps = 1/150 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + I+GIDP L   GW +V      L +++SG I +  + ++  RL  +   L  VI  ++
Sbjct: 1   MIILGIDPALGSLGWAVVAKENAQLKYLASGIIRTNSKDAIHHRLAFINSTLEKVILEYQ 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P  AA+E+ FVN ++V +LKLG AR   +       + + E+ PNT+KK V G GH +K 
Sbjct: 61  PNMAAIEETFVNTNSVTSLKLGYARGAIMSLIGRYNLDMREFKPNTVKKTVTGYGHAEKD 120

Query: 125 QIHMMLKMLM-PESFFKGKDAADALAIAVC 153
           Q+  M+K+L+   +     D ADA+AIA  
Sbjct: 121 QMLHMIKLLLSGTALITNSDEADAVAIAYT 150


>gi|294811585|ref|ZP_06770228.1| Crossover junction endodeoxyribonuclease ruvC [Streptomyces
           clavuligerus ATCC 27064]
 gi|326440226|ref|ZP_08214960.1| Holliday junction resolvase [Streptomyces clavuligerus ATCC 27064]
 gi|294324184|gb|EFG05827.1| Crossover junction endodeoxyribonuclease ruvC [Streptomyces
           clavuligerus ATCC 27064]
          Length = 202

 Score =  179 bits (455), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 47/139 (33%), Positives = 70/139 (50%), Gaps = 1/139 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G G+V+   G  L  +  G + S     LA RL  + +GL   +  +
Sbjct: 2   VRVLGVDPGLTRCGVGVVEGEAGRPLAMLGVGVVRSSPDADLAGRLVAIEQGLERWLDEY 61

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RPE  AVE+VF   +    +   QA A+A+L      IPV  + P+ +K AV G G  DK
Sbjct: 62  RPERVAVERVFSQHNVRTVMGTAQASAVAMLCAGRRGIPVVLHTPSEVKAAVTGTGRADK 121

Query: 124 KQIHMMLKMLMPESFFKGK 142
            Q+  M+  L+        
Sbjct: 122 AQVGAMVTRLLRLDAPPRP 140


>gi|89053455|ref|YP_508906.1| Holliday junction resolvase [Jannaschia sp. CCS1]
 gi|88863004|gb|ABD53881.1| crossover junction endodeoxyribonuclease RuvC [Jannaschia sp. CCS1]
          Length = 191

 Score =  178 bits (454), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 80/167 (47%), Positives = 112/167 (67%), Gaps = 2/167 (1%)

Query: 2   RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           R  +RIIGIDPGLR  GWG+++ +G  L  V++G   +   + +  RL  L+  L+ ++ 
Sbjct: 22  RAVMRIIGIDPGLRSLGWGVIEASGGRLSHVANGQCKTE-GRDVPLRLLSLHTQLSAIVA 80

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
            + P+ AAVEQ FVN+D   TLKLGQAR IA+L PA A + V EYAPN +KKAV+GVGH 
Sbjct: 81  RYAPDAAAVEQTFVNRDGAGTLKLGQARGIAVLVPAQAGLDVGEYAPNAVKKAVVGVGHA 140

Query: 122 DKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
           DK Q+  M+K+ +P     G DAADALAIA+CH++H  +   ++A+ 
Sbjct: 141 DKTQVEHMVKLQLPGCAPVGPDAADALAIAICHSFHVATA-GRLAAA 186


>gi|126668400|ref|ZP_01739357.1| Holliday junction resolvase [Marinobacter sp. ELB17]
 gi|126627109|gb|EAZ97749.1| Holliday junction resolvase [Marinobacter sp. ELB17]
          Length = 175

 Score =  178 bits (454), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 67/162 (41%), Positives = 105/162 (64%), Gaps = 2/162 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+G+DPG R TG+GI+ V G +  ++ SG I     + +A RL  +++ L  +I  +RPE
Sbjct: 4   ILGVDPGSRITGYGIIRVEGRHTEYIDSGCIR-VGEKPMAERLRVIFQSLVTLIAEFRPE 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+EQVF+ ++  + LKLGQAR  AI++ A + + V EY+   +K+AV+G G  +K Q+
Sbjct: 63  EFAIEQVFMARNPDSALKLGQARGAAIVAAATSGLEVHEYSARQVKQAVVGSGGAEKAQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
             M+++L+  S    +DAADALAIA+CHA+   S   ++A Q
Sbjct: 123 QHMVQVLLSLSRKPQEDAADALAIALCHAHMNQS-LLRVAGQ 163


>gi|157964183|ref|YP_001499007.1| Holliday junction resolvase [Rickettsia massiliae MTU5]
 gi|157843959|gb|ABV84460.1| Crossover junction endodeoxyribonuclease RuvC [Rickettsia massiliae
           MTU5]
          Length = 159

 Score =  178 bits (454), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 56/150 (37%), Positives = 85/150 (56%), Gaps = 1/150 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + I+GIDP L   GW +V      L +++SG I +  + ++  RL  +   L  VI  ++
Sbjct: 3   MIILGIDPALGSLGWAVVAKETAQLKYLASGIIKTNSKDAIHHRLAFINSTLEKVILEYQ 62

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P  AA+E+ FVN ++V +LKLG AR   +       + + E+ PNT+KK V G GH +K 
Sbjct: 63  PNMAAIEETFVNTNSVTSLKLGYARGAIMSLIGRYNLDMREFKPNTVKKTVTGYGHAEKD 122

Query: 125 QIHMMLKMLMPES-FFKGKDAADALAIAVC 153
           QI  M+K+L+P +      D ADA+AIA  
Sbjct: 123 QILHMIKLLLPGTFLITNSDEADAVAIAYT 152


>gi|108757135|ref|YP_633129.1| crossover junction endodeoxyribonuclease RuvC [Myxococcus xanthus
           DK 1622]
 gi|122980861|sp|Q1D2J4|RUVC_MYXXD RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|108461015|gb|ABF86200.1| crossover junction endodeoxyribonuclease RuvC [Myxococcus xanthus
           DK 1622]
          Length = 191

 Score =  178 bits (454), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 60/159 (37%), Positives = 88/159 (55%), Gaps = 2/159 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++G+DPG R  G+G+V+     L  V  G I       L+ RL  L+  LT  +  +R
Sbjct: 1   MRVLGVDPGSRFMGFGVVEEKRGRLVHVGHGVIKGDPALPLSDRLRDLHGALTAALVKYR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P   AVE VF  ++A + L LG AR +A+L+ A A +PV EYAP  +KKAV   G   K 
Sbjct: 61  PAAVAVEGVFTFRNARSALVLGHARGVALLAAAQAGLPVFEYAPAKVKKAVGAGGADGKD 120

Query: 125 QIHMMLKMLMPE--SFFKGKDAADALAIAVCHAYHANSG 161
            +  M++  +    S  +  DA+DALA+A+CH  H  + 
Sbjct: 121 AVARMVRTFLELDASVLERADASDALAVALCHLNHGRAA 159


>gi|291277643|ref|YP_003517415.1| crossover junction endodeoxyribonuclease [Helicobacter mustelae
           12198]
 gi|290964837|emb|CBG40696.1| crossover junction endodeoxyribonuclease [Helicobacter mustelae
           12198]
          Length = 151

 Score =  178 bits (454), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 44/151 (29%), Positives = 75/151 (49%), Gaps = 2/151 (1%)

Query: 8   IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEE 67
           +GIDPG R  G+ I+      L  + +G I     + L +++ +  EG+  V+K+ + + 
Sbjct: 1   MGIDPGSRNCGYAIIKKENQRLFLLEAGFIK-IKERVLQYQIAEFIEGIDMVLKHHKIDS 59

Query: 68  AAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIH 127
            A+E +F   +  + +KL Q R    L         +EY P  +KKA+ G G  DK Q+ 
Sbjct: 60  VAIEDMFYAYNPKSVIKLAQFRGALSLKILQDFGNFAEYTPLQVKKALTGNGKADKNQVA 119

Query: 128 MMLKMLMPES-FFKGKDAADALAIAVCHAYH 157
            M+K ++      +  D  DA+AIA+ H+  
Sbjct: 120 FMVKQILNLKGEIRPLDITDAIAIAITHSQR 150


>gi|325279153|ref|YP_004251695.1| Crossover junction endodeoxyribonuclease ruvC [Odoribacter
           splanchnicus DSM 20712]
 gi|324310962|gb|ADY31515.1| Crossover junction endodeoxyribonuclease ruvC [Odoribacter
           splanchnicus DSM 20712]
          Length = 185

 Score =  178 bits (454), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 53/163 (32%), Positives = 83/163 (50%), Gaps = 3/163 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAG--DNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           I+GIDPG    G+ I+ V G       V SG +          +L +++     VI +++
Sbjct: 5   IMGIDPGTNFMGYAIIKVFGKNQKPELVVSGIVDMIKITDPYIKLQRIFSRTLQVIDSYQ 64

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+E A+E  F  K+  + LKLG+A+ +AI +     IP+ EYAP  IK +V G G   K+
Sbjct: 65  PDELAIEAQFYGKNVQSMLKLGRAQGVAIAAALQRDIPIFEYAPRKIKMSVTGSGTASKE 124

Query: 125 QIHMML-KMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
           QI ++L K +   +  +  D  DA+AIA CH   + +      
Sbjct: 125 QIALLLGKFMTLHTTSEMLDETDAIAIAYCHYLQSCNPLTSAG 167


>gi|39934174|ref|NP_946450.1| Holliday junction resolvase [Rhodopseudomonas palustris CGA009]
 gi|192289699|ref|YP_001990304.1| Holliday junction resolvase [Rhodopseudomonas palustris TIE-1]
 gi|81563777|sp|Q6NAT1|RUVC_RHOPA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|229558763|sp|B3QHS1|RUVC_RHOPT RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|39648022|emb|CAE26542.1| RuvC; Holliday junction nuclease [Rhodopseudomonas palustris
           CGA009]
 gi|192283448|gb|ACE99828.1| crossover junction endodeoxyribonuclease RuvC [Rhodopseudomonas
           palustris TIE-1]
          Length = 174

 Score =  178 bits (454), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 89/161 (55%), Positives = 116/161 (72%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           +R+ IRI+GIDPGLRRTGWG+VD  G+ L +V+ G++       LA RL  +++GL  V+
Sbjct: 6   IRRPIRILGIDPGLRRTGWGVVDSDGNRLVYVACGSVEPRDTLPLAERLLAIHDGLAKVL 65

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
               P EAAVEQ FVNKD  ATLKLGQAR +A+L PA+  + V+EYAPN +KK V+G GH
Sbjct: 66  AAHAPAEAAVEQTFVNKDGAATLKLGQARGVAMLVPAMHGLLVAEYAPNLVKKTVVGAGH 125

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSG 161
            DK QI MMLK+L+P++  K  DAADALAIA+ HA+H  + 
Sbjct: 126 ADKTQIQMMLKILLPKADPKTADAADALAIAITHAHHRGAA 166


>gi|269956458|ref|YP_003326247.1| crossover junction endodeoxyribonuclease RuvC [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269305139|gb|ACZ30689.1| crossover junction endodeoxyribonuclease RuvC [Xylanimonas
           cellulosilytica DSM 15894]
          Length = 199

 Score =  178 bits (453), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 42/139 (30%), Positives = 70/139 (50%), Gaps = 1/139 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G G+VD   G     VS G I S    S+  RL  +   L + +   
Sbjct: 1   MRVLGVDPGLTRCGVGVVDSLPGRRAQLVSVGVIRSDPAASVDLRLLTVARELDEWLDAH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P+  AVE+VF   +    +   Q   +A+++ A   +PV+ + P+ +K AV G G   K
Sbjct: 61  VPDVVAVERVFAQHNVGTVMGTAQVAGLAMVAAARRGVPVALHTPSEVKAAVTGSGRAGK 120

Query: 124 KQIHMMLKMLMPESFFKGK 142
           +Q+  M++ L+  +     
Sbjct: 121 EQVQRMVQSLLGLAEPPRP 139


>gi|90417109|ref|ZP_01225037.1| crossover junction endodeoxyribonuclease RuvC [marine gamma
           proteobacterium HTCC2207]
 gi|90331125|gb|EAS46381.1| crossover junction endodeoxyribonuclease RuvC [marine gamma
           proteobacterium HTCC2207]
          Length = 171

 Score =  178 bits (453), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 59/132 (44%), Positives = 84/132 (63%), Gaps = 1/132 (0%)

Query: 6   RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           RIIGIDPG RRTG+GIVD     + +V+SG I      SL  RL  ++ G+  +I+ + P
Sbjct: 3   RIIGIDPGSRRTGYGIVDAVAGKVSYVTSGIIRLPEG-SLPERLKIIFNGVGQLIEQYAP 61

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
           EE  +E+VF++ +A + LKLGQAR  AI++   A + V EY+  +IK AV+G G  DK Q
Sbjct: 62  EEMGIEEVFLSHNASSALKLGQARGAAIVAGVNAGLSVGEYSARSIKLAVVGTGGADKSQ 121

Query: 126 IHMMLKMLMPES 137
           + MM+  L+  S
Sbjct: 122 VQMMIMQLLKLS 133


>gi|157828031|ref|YP_001494273.1| Holliday junction resolvase [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165932729|ref|YP_001649518.1| Holliday junction resolvase [Rickettsia rickettsii str. Iowa]
 gi|166233294|sp|A8GQU0|RUVC_RICRS RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|189046076|sp|B0BW86|RUVC_RICRO RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|157800512|gb|ABV75765.1| Holliday junction resolvase [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165907816|gb|ABY72112.1| crossover junction endodeoxyribonuclease [Rickettsia rickettsii
           str. Iowa]
          Length = 157

 Score =  178 bits (453), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 54/150 (36%), Positives = 84/150 (56%), Gaps = 1/150 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + I+GIDP L   GW +V      L +++SG I +  + ++  RL  +   L  VI  ++
Sbjct: 1   MIILGIDPALGSLGWAVVAKETAQLKYLASGIIRTNSKDAMHHRLAFINSTLEKVILEYQ 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P  AA+E+ FVN ++V +LKLG AR   +       + + E+ PNT+KK V G GH +K 
Sbjct: 61  PNMAAIEETFVNTNSVTSLKLGYARGAIMSLIGRYNLDMREFKPNTVKKTVTGYGHAEKD 120

Query: 125 QIHMMLKMLM-PESFFKGKDAADALAIAVC 153
           Q+  M+K+L+   +     D ADA+AIA  
Sbjct: 121 QMLHMIKLLLSGTALITNSDEADAVAIAYT 150


>gi|189183830|ref|YP_001937615.1| Holliday junction resolvase [Orientia tsutsugamushi str. Ikeda]
 gi|238692244|sp|B3CSI0|RUVC_ORITI RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|189180601|dbj|BAG40381.1| holliday junction endodeoxyribonuclease RuvC [Orientia
           tsutsugamushi str. Ikeda]
          Length = 159

 Score =  178 bits (453), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 55/149 (36%), Positives = 86/149 (57%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + I+GIDP L  TGWG++ ++G  + ++ SG I +  + SL  +L  +   +  +I  + 
Sbjct: 1   MIILGIDPSLVSTGWGVISISGSIVNYIDSGVIKTVSKDSLVLKLGNISLMIEKLITRFN 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P   A+E+VF+NK+  +++ L QAR   +       I  SEYAPN IKKA++G G  +K 
Sbjct: 61  PFHVAMEEVFINKNYSSSVTLIQARGAIMSVIGRYNIDFSEYAPNKIKKAIVGAGKAEKH 120

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVC 153
           Q+  M+K+LM       KD +DALA A  
Sbjct: 121 QVQQMVKLLMHIKKAISKDESDALATAYT 149


>gi|323143600|ref|ZP_08078277.1| crossover junction endodeoxyribonuclease RuvC [Succinatimonas
           hippei YIT 12066]
 gi|322416663|gb|EFY07320.1| crossover junction endodeoxyribonuclease RuvC [Succinatimonas
           hippei YIT 12066]
          Length = 177

 Score =  178 bits (453), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 56/152 (36%), Positives = 95/152 (62%), Gaps = 1/152 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R+TG+G++ + G  L ++ SG I +     L  RL  ++  ++ +I+ + P 
Sbjct: 5   ILGIDPGSRKTGYGVIKIQGSALVYLGSGCINAGSGA-LYKRLQTIFVAVSTIIEQFSPT 63

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+E+ F++K+  +T+KL +ARA A+++ + A + + EY P  IK+AV+G G   K Q+
Sbjct: 64  VFAIEETFLSKNVQSTVKLSEARAAAMIAGSNAGLEIFEYTPRQIKQAVVGYGAAQKHQV 123

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHA 158
             M++ ++  S     DAADALA A+CH Y +
Sbjct: 124 QYMVERILKLSGTPQADAADALACAICHGYTS 155


>gi|319957848|ref|YP_004169111.1| holliday junction endonuclease ruvc [Nitratifractor salsuginis DSM
           16511]
 gi|319420252|gb|ADV47362.1| Holliday junction endonuclease RuvC [Nitratifractor salsuginis DSM
           16511]
          Length = 158

 Score =  178 bits (453), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 48/154 (31%), Positives = 73/154 (47%), Gaps = 2/154 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + I+GIDPG R  G+  +      +  + +G +       L  ++ +L EGL  ++K   
Sbjct: 1   MVIMGIDPGSRNLGYCFLHYERGKMELLEAGLLKIAPGT-LQEQIVELAEGLDLLLKKQH 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+E A+E +F   +    LKL Q R    L          EY P  +KKA+ G G   K+
Sbjct: 60  PDEVAIEDIFYAFNPKTVLKLAQFRGALSLKVLQEVGYFYEYTPLQVKKALTGNGKAAKE 119

Query: 125 QIHMMLKMLMP-ESFFKGKDAADALAIAVCHAYH 157
           Q+  M+K L+      K  D  DA+AIA+ HA  
Sbjct: 120 QVAFMVKRLLGIRREIKPLDITDAMAIAITHAQR 153


>gi|29839887|ref|NP_828993.1| Holliday junction resolvase [Chlamydophila caviae GPIC]
 gi|33301630|sp|Q824M6|RUVC_CHLCV RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|29834234|gb|AAP04871.1| crossover junction endodeoxyribonuclease RuvC [Chlamydophila caviae
           GPIC]
          Length = 168

 Score =  178 bits (453), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 57/156 (36%), Positives = 91/156 (58%), Gaps = 4/156 (2%)

Query: 7   IIGIDPGLRRTGWGIVDVAGD-NLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           I+GIDPG   +G+ I+ +     +   S G I    + SL  R  QL++ L+ V+ +  P
Sbjct: 5   IMGIDPGTLVSGYAIIHIEQRYKIRAHSYGAIRLSSKDSLTQRYKQLFQTLSGVLDDITP 64

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
           +   +E  +V+K+  +T+KLG AR + IL+ AL  IPV EYAPN  K+AV+G G+  K+Q
Sbjct: 65  DAVVLETQYVHKNPQSTIKLGMARGVLILAAALRDIPVFEYAPNVAKRAVVGKGNASKQQ 124

Query: 126 IHMMLKMLMPESFFKGK---DAADALAIAVCHAYHA 158
           + +M+  ++           D ADA A+A+CHA+ +
Sbjct: 125 VQLMVSKILNIPDVLNSNCEDIADAFALAICHAHTS 160


>gi|325001689|ref|ZP_08122801.1| Holliday junction resolvase [Pseudonocardia sp. P1]
          Length = 159

 Score =  178 bits (452), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 55/156 (35%), Positives = 87/156 (55%), Gaps = 2/156 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G G+V+   G ++ FV  G + S    +L  RL  + + +   I   
Sbjct: 1   MRVLGVDPGLTRCGIGVVESGEGRSVSFVDVGVVRSGTDLALERRLLTVADEVERWIARH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RP+  AVE+VF   +    +   QA  +  L  A A +PV+ + P+ +K AV G G   K
Sbjct: 61  RPDVIAVERVFSQHNVRTVMGTAQASGVVALVAARAGLPVAFHTPSEVKAAVTGEGRAGK 120

Query: 124 KQIHMML-KMLMPESFFKGKDAADALAIAVCHAYHA 158
            Q+  M+ K+L  ++  K  DAADALA+A+CH + +
Sbjct: 121 AQVTTMVTKVLGLDTPPKPADAADALALAICHCWRS 156


>gi|261414852|ref|YP_003248535.1| crossover junction endodeoxyribonuclease RuvC [Fibrobacter
           succinogenes subsp. succinogenes S85]
 gi|261371308|gb|ACX74053.1| crossover junction endodeoxyribonuclease RuvC [Fibrobacter
           succinogenes subsp. succinogenes S85]
 gi|302326365|gb|ADL25566.1| crossover junction endodeoxyribonuclease RuvC [Fibrobacter
           succinogenes subsp. succinogenes S85]
          Length = 189

 Score =  178 bits (452), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 46/153 (30%), Positives = 74/153 (48%), Gaps = 1/153 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + I+GIDPG   TG+  +   G+ +  +  GT  +   ++L  RL  +   L   + ++ 
Sbjct: 1   MVILGIDPGSITTGYAFLKKTGNQIQVLEYGTFHANATKNLEDRLVHIVTELEKRLDHYH 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  A+E VF  K+  + L LG  R   +++     +   EY P  +K+AV G G   K+
Sbjct: 61  PDALAMEGVFFAKNVKSALVLGHIRGAILVACHRRGMTYEEYPPKVVKQAVTGNGAASKE 120

Query: 125 QIHMML-KMLMPESFFKGKDAADALAIAVCHAY 156
            +  M+   L         DA+DALAIA  HA 
Sbjct: 121 HVANMIFAHLGIVGGDLPLDASDALAIAWTHAN 153


>gi|56460195|ref|YP_155476.1| Holliday junction resolvase [Idiomarina loihiensis L2TR]
 gi|81600179|sp|Q5QYV0|RUVC_IDILO RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|56179205|gb|AAV81927.1| Holliday junction resolvasome, endonuclease subunit [Idiomarina
           loihiensis L2TR]
          Length = 178

 Score =  178 bits (452), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 64/166 (38%), Positives = 107/166 (64%), Gaps = 5/166 (3%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIV----SCVRQSLAFRLCQLYEGLTDVIKN 62
           I+GIDPG R TG+G+++  G  L ++ SG I     +    +LA +L ++++ ++++I  
Sbjct: 4   ILGIDPGSRLTGYGVIEQRGRQLNYLGSGCIKVIGTTKEPLTLAEKLRRIHDSVSELITQ 63

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
           ++P E A+EQVF+ K+  + LKLGQAR  AI++ A A +PV+EY+   IK++V+G G  +
Sbjct: 64  FKPNEFAIEQVFMAKNPDSALKLGQARGAAIVAAACAELPVAEYSARQIKQSVVGNGGAE 123

Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
           K Q+  M+  L+       +DAADALA+A+CHA+ + +   K+A  
Sbjct: 124 KSQVQHMVMALLNLQRCPQEDAADALAVALCHAHSSQN-LIKMAGA 168


>gi|300934560|ref|ZP_07149816.1| Holliday junction resolvase [Corynebacterium resistens DSM 45100]
          Length = 208

 Score =  178 bits (452), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 51/158 (32%), Positives = 83/158 (52%), Gaps = 2/158 (1%)

Query: 3   KSIRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
             +R++GIDPGL R G  +V    G  +  V+ G + +    SL  RL +L   + + + 
Sbjct: 41  AGLRVMGIDPGLTRCGLSVVQAGRGRAVLPVAVGVVRTPASDSLTSRLLRLSNAVEEWMD 100

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
            ++P+  A+E+VF   +    +    A  + +L+ A   + V  Y P+ +KKA+ G G  
Sbjct: 101 EYKPDVVALERVFERSNVSTVMNTAHASGVLMLAAAKRGLDVHMYTPSEVKKAITGNGRA 160

Query: 122 DKKQIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHA 158
           DK Q+  M+  ++      K  DAADALA+AVCH + A
Sbjct: 161 DKPQMTNMVTRILGLGEPPKPADAADALALAVCHCWRA 198


>gi|126663029|ref|ZP_01734027.1| Holliday junction resolvase [Flavobacteria bacterium BAL38]
 gi|126624687|gb|EAZ95377.1| Holliday junction resolvase [Flavobacteria bacterium BAL38]
          Length = 168

 Score =  178 bits (452), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 43/144 (29%), Positives = 78/144 (54%), Gaps = 1/144 (0%)

Query: 17  TGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVN 76
            G+G++ V    + F+    ++     +   +L  ++E   ++I+   P+E A+E  F  
Sbjct: 1   MGFGLIKVVNKKMEFLQLNELILSKYDNHYQKLKVIFERTIELIETHHPDEIAIEAPFFG 60

Query: 77  KDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPE 136
           K+  + LKLG+A+ +A+ +     IP++EY P  IK A+ G G+  K+Q+  ML+ L+  
Sbjct: 61  KNVQSMLKLGRAQGVAMAAGLSRDIPITEYEPKKIKMAITGNGNASKEQVAKMLQQLLGL 120

Query: 137 -SFFKGKDAADALAIAVCHAYHAN 159
               K  D+ D LA AVCH +++ 
Sbjct: 121 KELPKNLDSTDGLAAAVCHFFNSG 144


>gi|331697371|ref|YP_004333610.1| Crossover junction endodeoxyribonuclease ruvC [Pseudonocardia
           dioxanivorans CB1190]
 gi|326952060|gb|AEA25757.1| Crossover junction endodeoxyribonuclease ruvC [Pseudonocardia
           dioxanivorans CB1190]
          Length = 188

 Score =  178 bits (452), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 51/156 (32%), Positives = 82/156 (52%), Gaps = 2/156 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G G+VD  G   + FV+   + +     L  RL  + +     I  +
Sbjct: 1   MRVLGVDPGLTRCGIGVVDSTGGRGVEFVAVDVVRTPAHAPLPARLLAVADAADRWIAAF 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P+  AVE+VF   +  + +   QA  +  L+ A A +PV+ + P+ +K +V G G  DK
Sbjct: 61  SPDVVAVERVFSQHNVRSVMGTAQASGVIALAAARAGLPVAFHTPSEVKASVTGAGRADK 120

Query: 124 KQIHMMLKMLMPESFFK-GKDAADALAIAVCHAYHA 158
            Q+  M+  L+         DAADALA+A+CH +  
Sbjct: 121 AQVTTMVTRLLRLDAPPRPADAADALALAICHCWRG 156


>gi|213018929|ref|ZP_03334737.1| crossover junction endodeoxyribonuclease RuvC [Wolbachia
           endosymbiont of Culex quinquefasciatus JHB]
 gi|212995880|gb|EEB56520.1| crossover junction endodeoxyribonuclease RuvC [Wolbachia
           endosymbiont of Culex quinquefasciatus JHB]
          Length = 155

 Score =  178 bits (452), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 65/152 (42%), Positives = 92/152 (60%), Gaps = 1/152 (0%)

Query: 17  TGWGIVD-VAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFV 75
           TGW I+     +N+ F+  GTI +  +  +  RL  ++E L  VI  + P EAAVE++F+
Sbjct: 4   TGWAIIRLEEKNNIKFLGGGTISTDGKLGVGERLHIIFEQLKKVIFLYSPNEAAVEKIFI 63

Query: 76  NKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMP 135
           NK+  ++L LG ARAIAIL   +  +P++EY  N IKK++ G GH DK QI  M+K ++ 
Sbjct: 64  NKNPKSSLTLGYARAIAILILRMTDLPMNEYDANYIKKSITGNGHADKGQIIFMVKQIVK 123

Query: 136 ESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
            S  K    ADALA A+CHAY  N  +  I S
Sbjct: 124 SSNIKCHHTADALATAICHAYTKNFCFMGIGS 155


>gi|254424620|ref|ZP_05038338.1| Crossover junction endodeoxyribonuclease RuvC superfamily
           [Synechococcus sp. PCC 7335]
 gi|196192109|gb|EDX87073.1| Crossover junction endodeoxyribonuclease RuvC superfamily
           [Synechococcus sp. PCC 7335]
          Length = 157

 Score =  178 bits (452), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 42/155 (27%), Positives = 77/155 (49%), Gaps = 9/155 (5%)

Query: 11  DPGLRRTGWGIVDVAGDN-------LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           DPGL   G+G+++            +  +  G + +  R     RLC +Y  L  VI  +
Sbjct: 2   DPGLAILGFGVLEYDPAKMRDLMPDIRVIDYGIVQTPARTDTGQRLCTIYNDLHSVIDEY 61

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +P+  ++E++F  +     + + QAR + +L  A   +P  E+ P  IK+++ G G+ DK
Sbjct: 62  KPDLVSIEKLFFYRMGNT-ILVAQARGVVMLVLAQCNLPFVEFTPAQIKQSITGHGNADK 120

Query: 124 KQIHMML-KMLMPESFFKGKDAADALAIAVCHAYH 157
            ++   + + L  E+  K  DAAD LA+A+   + 
Sbjct: 121 VEVQDAVARELNLEAIPKPDDAADGLAVALTAWFR 155


>gi|78043886|ref|YP_360356.1| crossover junction endodeoxyribonuclease RuvC [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|90146444|sp|Q3ABX8|RUVC_CARHZ RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|77996001|gb|ABB14900.1| crossover junction endodeoxyribonuclease RuvC [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 158

 Score =  178 bits (452), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 52/164 (31%), Positives = 85/164 (51%), Gaps = 9/164 (5%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++IIGIDPG    G G+++     L   +   I +        RL  +++ L +++   +
Sbjct: 1   MKIIGIDPGTAIVGVGVLEKKNGKLIVKNFQAITTPPIAK-EKRLKIIFQKLNEILIQEK 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           PE   VE++F +K+    + +G+AR + +L+ AL  IPV E  P  +K  V G GH  K 
Sbjct: 60  PEIVVVEELFFSKNVKTAISVGEARGVVLLASALNDIPVLELKPVEVKTIVTGYGHAPKS 119

Query: 125 QIHMML-KMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
           Q+  M+ K+L  ++  K  D ADALAIA        +G+ K+  
Sbjct: 120 QVEYMIAKLLGLKTPPKPDDVADALAIAY-------AGFLKMGG 156


>gi|148239937|ref|YP_001225324.1| crossover junction endodeoxyribonuclease RuvC [Synechococcus sp. WH
           7803]
 gi|166233305|sp|A5GM62|RUVC_SYNPW RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|147848476|emb|CAK24027.1| Crossover junction endodeoxyribonuclease RuvC (Holliday juction
           resolvase ruvC) [Synechococcus sp. WH 7803]
          Length = 154

 Score =  178 bits (452), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 42/138 (30%), Positives = 74/138 (53%), Gaps = 1/138 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGL R G+G+++ AG     +  G I +   +    R+ ++   L  +I+ W+
Sbjct: 1   MRILGIDPGLARVGYGVIETAGREQTMLDCGIIRTDSGRPEGERMVEIARDLRQLIRAWK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           PE AAVE+ F  +    T+ + QAR + I++ +   +P+ E+ P  IK+A+ G GH DK 
Sbjct: 61  PELAAVEKFFFYRS-SNTIAVVQARGVVIMTLSRFGLPIVEFPPMQIKQALTGHGHADKD 119

Query: 125 QIHMMLKMLMPESFFKGK 142
           ++   +   +        
Sbjct: 120 EVLEAVMRELSLETPPRP 137


>gi|294085859|ref|YP_003552619.1| Holliday junction resolvase [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292665434|gb|ADE40535.1| Holliday junction resolvase [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 200

 Score =  178 bits (452), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 52/134 (38%), Positives = 81/134 (60%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPGLR TGWG++DV    L  V++G I    ++  A RL ++ + L+ +I   +
Sbjct: 1   MRVLGIDPGLRATGWGVIDVTAGRLIHVANGVIKPNHKEPDAQRLGRIADDLSAIIAAHQ 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P  AA+E++FV K A + LKLG AR + I+    A + V E A   +KK++ G G  DK+
Sbjct: 61  PTYAAIEEIFVAKSAKSALKLGMARGVGIMICGQAGLEVHELAARLVKKSITGTGTADKR 120

Query: 125 QIHMMLKMLMPESF 138
           QI  M+  L+  + 
Sbjct: 121 QIQDMVSRLLGVTP 134


>gi|256788880|ref|ZP_05527311.1| Holliday junction resolvase [Streptomyces lividans TK24]
 gi|289772768|ref|ZP_06532146.1| crossover junction endodeoxyribonuclease RuvC [Streptomyces
           lividans TK24]
 gi|289702967|gb|EFD70396.1| crossover junction endodeoxyribonuclease RuvC [Streptomyces
           lividans TK24]
          Length = 188

 Score =  177 bits (451), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 47/133 (35%), Positives = 72/133 (54%), Gaps = 1/133 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVD-VAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G G+V+ VAG  L  +  G + +     L  RL  + +G+   +   
Sbjct: 1   MRVLGVDPGLTRCGIGVVEGVAGRPLTMIGVGVVRTPADADLGHRLVAVEQGIEQWLDEH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RPE  AVE+VF   +    +   QA A+AIL  +   IPV+ + P+ +K AV G G  DK
Sbjct: 61  RPEFVAVERVFSQHNVRTVMGTAQASAVAILCASRRGIPVALHTPSEVKAAVTGSGRADK 120

Query: 124 KQIHMMLKMLMPE 136
            Q+  M+  L+  
Sbjct: 121 AQVGAMVTRLLRL 133


>gi|15892082|ref|NP_359796.1| Holliday junction resolvase [Rickettsia conorii str. Malish 7]
 gi|20140121|sp|Q92JA8|RUVC_RICCN RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|15619204|gb|AAL02697.1| crossover junction endodeoxyribonuclease RuvC [Rickettsia conorii
           str. Malish 7]
          Length = 157

 Score =  177 bits (451), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 53/150 (35%), Positives = 83/150 (55%), Gaps = 1/150 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + I+GIDP L   GW +V      L +++SG I +  + ++  RL  +   L  VI  ++
Sbjct: 1   MIILGIDPALGSLGWAVVAKETAQLKYLASGIIRTNSKDAIHHRLAFINSTLEKVILEYQ 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P   A+E+ FVN ++V +LKLG AR   +       + + E+ PNT+KK V G GH +K 
Sbjct: 61  PNMVAIEETFVNTNSVTSLKLGYARGAIMSLIGRYNLDMREFKPNTVKKTVTGYGHAEKD 120

Query: 125 QIHMMLKMLM-PESFFKGKDAADALAIAVC 153
           Q+  M+K+L+   +     D ADA+AIA  
Sbjct: 121 QMLHMIKLLLSGTALITNSDEADAVAIAYT 150


>gi|323180660|gb|EFZ66205.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
           1180]
          Length = 161

 Score =  177 bits (451), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 46/125 (36%), Positives = 76/125 (60%), Gaps = 1/125 (0%)

Query: 17  TGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVN 76
           TG+G++   G  L ++ SG I + V   L  RL  +Y G+T++I  ++P+  A+EQVF+ 
Sbjct: 2   TGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQPDYFAIEQVFMA 60

Query: 77  KDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPE 136
           K+A + LKLGQAR +AI++     +PV EYA   +K+ V+G+G  +K Q+  M++ L+  
Sbjct: 61  KNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQVQHMVRTLLKL 120

Query: 137 SFFKG 141
                
Sbjct: 121 PANPQ 125


>gi|254456897|ref|ZP_05070325.1| crossover junction endodeoxyribonuclease RuvC [Campylobacterales
           bacterium GD 1]
 gi|207085689|gb|EDZ62973.1| crossover junction endodeoxyribonuclease RuvC [Campylobacterales
           bacterium GD 1]
          Length = 158

 Score =  177 bits (451), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 44/154 (28%), Positives = 78/154 (50%), Gaps = 2/154 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + I+GIDPG R  G+ ++ +    +  + +G I     + L F++ Q+ EG+  + K   
Sbjct: 1   MIILGIDPGTRNMGYALISLEKGKISLIEAGLIKMKA-EELQFQIPQMAEGIDTIFKRHN 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
            +E A+E +F   +   T+KL Q R   +L          EY    +KKA+ G     K+
Sbjct: 60  IDEVAMEDIFYAHNPATTIKLAQFRGAIMLKLLEVHGKFYEYTALQVKKALTGKAKAGKE 119

Query: 125 QIHMMLKMLMP-ESFFKGKDAADALAIAVCHAYH 157
           Q+  M+K+L+  +   K  D +DA+A+A+ H+  
Sbjct: 120 QVAYMVKILLNIKKEIKPLDISDAMAVAITHSQR 153


>gi|258593139|emb|CBE69450.1| Crossover junction endodeoxyribonuclease ruvC (Holliday junction
           nuclease ruvC) [NC10 bacterium 'Dutch sediment']
          Length = 166

 Score =  177 bits (451), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 60/165 (36%), Positives = 96/165 (58%), Gaps = 2/165 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + ++G+DPG   TG+G+V  +   L  V  G+I++  R     RL Q+Y  L ++I+  +
Sbjct: 1   MLVLGVDPGAGATGYGMVARSDGALRAVEYGSIITTPRDPFPARLQQIYSRLAELIRCHQ 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           PE AA+E +   K+  +  KLGQAR +AIL  A   + V+EY+P  IK AV G G   K 
Sbjct: 61  PEWAAIESLIFAKNVQSAFKLGQARGVAILVAAQNGLTVAEYSPLQIKSAVTGYGAAGKF 120

Query: 125 QIHMMLKMLMPESFF-KGKDAADALAIAVCHAYHANSGYYKIASQ 168
           Q+  M++ L+      +  DAADALA+A+CH +H+    +++  +
Sbjct: 121 QVQQMVQSLLGLKEPIRSADAADALAVAICH-HHSAGLLHRLGGR 164


>gi|254418020|ref|ZP_05031744.1| crossover junction endodeoxyribonuclease RuvC [Brevundimonas sp.
           BAL3]
 gi|196184197|gb|EDX79173.1| crossover junction endodeoxyribonuclease RuvC [Brevundimonas sp.
           BAL3]
          Length = 172

 Score =  177 bits (451), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 65/134 (48%), Positives = 88/134 (65%)

Query: 2   RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
            + +RIIG+DPGLRRTGWG++   G  L +V+ G +        + RL  L+E L  +  
Sbjct: 3   NEPVRIIGLDPGLRRTGWGVIVSDGARLRWVAHGVVAPPEAAPFSERLLFLFEALGTICA 62

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
           +   EEAAVE+VFVN +  +TLKLG ARA  +L+PA   + V+EY+PN IKKAV+G GH 
Sbjct: 63  DHGCEEAAVEEVFVNVNPSSTLKLGHARAAVMLAPAKLGLAVAEYSPNLIKKAVVGAGHA 122

Query: 122 DKKQIHMMLKMLMP 135
           DK QI  M+K L+P
Sbjct: 123 DKSQIAFMIKRLLP 136


>gi|157826643|ref|YP_001495707.1| Holliday junction resolvase [Rickettsia bellii OSU 85-389]
 gi|166233293|sp|A8GUZ9|RUVC_RICB8 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|157801947|gb|ABV78670.1| Holliday junction resolvase [Rickettsia bellii OSU 85-389]
          Length = 157

 Score =  177 bits (451), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 55/150 (36%), Positives = 83/150 (55%), Gaps = 1/150 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + ++GIDP L   GW +V      L +++SG I +  +  +  RL  +   L  VI  ++
Sbjct: 1   MIVLGIDPALGSLGWAVVAKESAKLKYLASGVIKTSSKDEIHHRLSYINSILEKVILEYK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P  A +E+ FVN ++V +LKLG AR   +       + + E+ PNTIKK V G GH +K 
Sbjct: 61  PNMATIEETFVNTNSVTSLKLGYARGAIMSLIGRYDLDMREFKPNTIKKTVTGYGHAEKD 120

Query: 125 QIHMMLKMLMPES-FFKGKDAADALAIAVC 153
           QI  M+K+L+P +      D ADA+AIA  
Sbjct: 121 QILHMIKLLLPGTAAITNSDEADAVAIAYT 150


>gi|269216144|ref|ZP_06159998.1| crossover junction endodeoxyribonuclease RuvC [Slackia exigua ATCC
           700122]
 gi|269130403|gb|EEZ61481.1| crossover junction endodeoxyribonuclease RuvC [Slackia exigua ATCC
           700122]
          Length = 183

 Score =  177 bits (450), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 45/137 (32%), Positives = 72/137 (52%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPGL  TGWGIV   G  L  ++ G I +     L+ RL ++Y+ +  +++ + P 
Sbjct: 21  ILGIDPGLANTGWGIVRQTGGRLACLAYGCISTSPNTDLSQRLRKIYDQMALIVQRYEPN 80

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
              +E V+   +  +    GQAR  A+ + A     V E++P+ IKKAV G G  +K Q+
Sbjct: 81  CLGIETVWFGANVQSAFATGQARGAALAAVARFDAKVGEFSPSQIKKAVTGEGSAEKDQV 140

Query: 127 HMMLKMLMPESFFKGKD 143
             M++ L+        D
Sbjct: 141 EYMVQQLLSLPEPPRPD 157


>gi|72162494|ref|YP_290151.1| Holliday junction resolvase [Thermobifida fusca YX]
 gi|110287675|sp|Q47N41|RUVC_THEFY RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|71916226|gb|AAZ56128.1| Holliday junction endonuclease RuvC [Thermobifida fusca YX]
          Length = 182

 Score =  177 bits (450), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 44/139 (31%), Positives = 75/139 (53%), Gaps = 1/139 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVD-VAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++GIDPGL R G G+VD   G  L  V++G + +   + L  RL  + +G+   + ++
Sbjct: 1   MRVLGIDPGLTRCGIGVVDGAVGAPLTMVAAGAVRTLADEELPARLLGIEKGIEQWLDDY 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +P+  AVE+VF   +    +   QA AIA++  A   +PVS + P+ +K A+ G G  DK
Sbjct: 61  QPDAVAVERVFAQHNVRTVMGTAQASAIAVVCAARRGLPVSLHTPSEVKAAITGSGRADK 120

Query: 124 KQIHMMLKMLMPESFFKGK 142
            Q+  M+  ++        
Sbjct: 121 AQVGTMVARILRLDSPPRP 139


>gi|148241827|ref|YP_001226984.1| Holliday junction resolvase [Synechococcus sp. RCC307]
 gi|166233306|sp|A5GRX2|RUVC_SYNR3 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|147850137|emb|CAK27631.1| Crossover junction endodeoxyribonuclease RuvC (Holliday juction
           resolvase RuvC) [Synechococcus sp. RCC307]
          Length = 157

 Score =  177 bits (450), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 51/158 (32%), Positives = 84/158 (53%), Gaps = 5/158 (3%)

Query: 5   IRIIGIDPGLRRTGWGIVDVA---GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           +RI+G+DPGL R G+G+++V     +    V  G I +   +    R+ ++   L  +++
Sbjct: 1   MRILGLDPGLARVGYGVLEVDEQRRNQPEMVDCGIISTDAGRGEGERMVEIARDLRQLLR 60

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
             RP+ AAVE+ F  +    T+ + QAR + I++ A  +IP  EY P  IK A+ G GH 
Sbjct: 61  LHRPDLAAVEKFFFYRS-SNTIAVVQARGVLIMTLARFQIPTVEYPPMQIKLALAGSGHA 119

Query: 122 DKKQIHMML-KMLMPESFFKGKDAADALAIAVCHAYHA 158
           DK ++   + + L      K  DAADALA+ +   +  
Sbjct: 120 DKGEVQDAVMRELRLNERPKPDDAADALAVGLTAWFQR 157


>gi|297621996|ref|YP_003710133.1| Holliday junction endonuclease RuvC [Waddlia chondrophila WSU
           86-1044]
 gi|297377297|gb|ADI39127.1| Holliday junction endonuclease RuvC [Waddlia chondrophila WSU
           86-1044]
          Length = 159

 Score =  177 bits (450), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 40/138 (28%), Positives = 69/138 (50%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + I+GIDPG    G+GIV+  G     +  G I   V+ +L  R   +Y+ +  +++   
Sbjct: 1   MIILGIDPGTVVCGFGIVEFDGVRFRVIDFGCIRPPVKYALPDRYLVIYDSVYALLEEHD 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P    VE  +V  +  + +K+G AR   +++ A   +P+ EYAP+  K AV+G G   K 
Sbjct: 61  PHALVVETQYVKHNPQSAMKIGMARGAVMIAGAKKGVPIYEYAPSKAKLAVVGNGRASKH 120

Query: 125 QIHMMLKMLMPESFFKGK 142
           Q+  M++ L+        
Sbjct: 121 QVQSMVQHLLHLPEPPSP 138


>gi|42527370|ref|NP_972468.1| crossover junction endodeoxyribonuclease RuvC [Treponema denticola
           ATCC 35405]
 gi|81570208|sp|Q73LJ8|RUVC_TREDE RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|41817955|gb|AAS12379.1| crossover junction endodeoxyribonuclease RuvC [Treponema denticola
           ATCC 35405]
          Length = 178

 Score =  177 bits (450), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 43/137 (31%), Positives = 83/137 (60%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           +IGIDPGL  TG+GI+  + +    +  G+I +        RL ++++ ++++I+ +RP+
Sbjct: 17  VIGIDPGLANTGYGIISFSNNRFECIEYGSISTEPHLLQGERLLKIFDKVSELIEKYRPK 76

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           EA +E ++  K+A + + + +AR + +L+ A   + V EYAPN+IKKAV G+   +K+Q+
Sbjct: 77  EAGIETLYFAKNATSAMSVSEARGVVLLALAQGGVRVGEYAPNSIKKAVTGIAQAEKRQV 136

Query: 127 HMMLKMLMPESFFKGKD 143
              +K+++        D
Sbjct: 137 QEAVKLILGLKEIPRPD 153


>gi|300781058|ref|ZP_07090912.1| crossover junction endoribonuclease subunit C [Corynebacterium
           genitalium ATCC 33030]
 gi|300532765|gb|EFK53826.1| crossover junction endoribonuclease subunit C [Corynebacterium
           genitalium ATCC 33030]
          Length = 181

 Score =  177 bits (450), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 55/158 (34%), Positives = 89/158 (56%), Gaps = 2/158 (1%)

Query: 3   KSIRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           + +R++GIDPGL R G  ++    G  +  V+ G + +     LA RL +L + + + I 
Sbjct: 4   EGLRVMGIDPGLTRCGLSVIQAGKGRQVIPVAVGVVRTPSDAELAHRLLRLSQAVEEWID 63

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
           +++P+  A+E++F   +    +    A  + +L+ A   IPV  Y P+ +KKAV G G  
Sbjct: 64  DYQPDVIAMERIFERGNVSTVMHTAHAVGVMVLAAAKRDIPVHMYTPSEVKKAVSGNGRA 123

Query: 122 DKKQIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHA 158
           DKKQ+  M+  ++   +  K  DAADALAIAVCH + A
Sbjct: 124 DKKQMTSMITRILGLGAPPKPADAADALAIAVCHCWRA 161


>gi|187251559|ref|YP_001876041.1| crossover junction endodeoxyribonuclease RuvC [Elusimicrobium
           minutum Pei191]
 gi|186971719|gb|ACC98704.1| Crossover junction endodeoxyribonuclease RuvC [Elusimicrobium
           minutum Pei191]
          Length = 189

 Score =  177 bits (450), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 45/151 (29%), Positives = 80/151 (52%), Gaps = 2/151 (1%)

Query: 7   IIGIDPGLRRTGWGIV-DVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           ++GIDPGL RTGW I+      N+   + G I S    +L  RL  ++  +  + + ++P
Sbjct: 9   VLGIDPGLDRTGWAILTRDKNSNIRLTACGLIHSSKDSALPERLEYIFNEIGKLAEAYKP 68

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
              A+E++F  K A+   +  Q R + +L+  L  + ++ Y+P  +K  + G G   K Q
Sbjct: 69  NHVAMEEMFFLKRAITVSQTIQTRGVILLAAHLKGLNINSYSPKKVKSVICGSGTAGKAQ 128

Query: 126 IHMMLKMLMPES-FFKGKDAADALAIAVCHA 155
           I  M+++ +  +   +  D ADA+AI +CH 
Sbjct: 129 IQRMVQLTLKLTKKPEPDDVADAIAIGICHL 159


>gi|170740566|ref|YP_001769221.1| Holliday junction resolvase [Methylobacterium sp. 4-46]
 gi|168194840|gb|ACA16787.1| crossover junction endodeoxyribonuclease RuvC [Methylobacterium sp.
           4-46]
          Length = 217

 Score =  177 bits (450), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 73/135 (54%), Positives = 97/135 (71%)

Query: 2   RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
              +RI+GIDPGLRRTGWG++ V G  L F + G + S    +LA RL  L++GL  V+ 
Sbjct: 3   TTPVRILGIDPGLRRTGWGLITVTGTRLAFEACGVLTSDGDDALALRLRDLHDGLVRVVA 62

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
             RP+E AVE+ FVNKDA ATLKLG ARA+A+L PALA +PV+EYA N +KK V+GVGH 
Sbjct: 63  AQRPDEVAVEETFVNKDAQATLKLGHARAVALLVPALAGLPVAEYAANLVKKTVVGVGHA 122

Query: 122 DKKQIHMMLKMLMPE 136
           +K Q+  M++ L+P+
Sbjct: 123 EKGQVAAMVRFLLPK 137


>gi|224437106|ref|ZP_03658087.1| Holliday junction resolvase [Helicobacter cinaedi CCUG 18818]
          Length = 170

 Score =  177 bits (450), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 50/162 (30%), Positives = 80/162 (49%), Gaps = 8/162 (4%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAG------DNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTD 58
           + I+GIDPG R  G+ I+ +A        +L  + +G I     +SL  ++ +  EG+  
Sbjct: 1   MYILGIDPGSRNCGYAIIQMADANMHLKGSLKLIEAGIIK-IKERSLQHQIVEFVEGIDM 59

Query: 59  VIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGV 118
           V+K    +E A+E +F   +  + +KL Q R    L         +EY P  +KKA+ G 
Sbjct: 60  VLKLHHIDEVAIEDIFFAYNPKSVIKLAQFRGALSLKILQEIGNFAEYTPLQVKKAITGN 119

Query: 119 GHGDKKQIHMMLKMLMP-ESFFKGKDAADALAIAVCHAYHAN 159
           G  DK Q+  M+K ++  +   K  D  DALAIA+ H+    
Sbjct: 120 GKADKAQVAFMVKKILGIKGEIKPLDITDALAIAITHSQRVG 161


>gi|320160778|ref|YP_004174002.1| crossover junction endodeoxyribonuclease RuvC [Anaerolinea
           thermophila UNI-1]
 gi|319994631|dbj|BAJ63402.1| crossover junction endodeoxyribonuclease RuvC [Anaerolinea
           thermophila UNI-1]
          Length = 167

 Score =  177 bits (450), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 56/155 (36%), Positives = 88/155 (56%), Gaps = 2/155 (1%)

Query: 5   IRIIGIDPGLRRTGWGIV-DVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           + ++GIDPG   TG+G+V +    +L  V  G I +        RL  LY  L ++I   
Sbjct: 1   MLVLGIDPGTATTGYGLVRESQDGSLHLVGYGVIQTPAGLEEEKRLLLLYHKLNELILLH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P    VE++F  ++    + +GQAR + +L+ A   IPV EY P  +K++V G G+ DK
Sbjct: 61  APNAGVVEKLFFRRNVTTAIGVGQARGVVLLALAQHGIPVWEYTPMEVKQSVSGYGNADK 120

Query: 124 KQIHMMLKMLMPESF-FKGKDAADALAIAVCHAYH 157
           +Q+ +M++ L+      K  DAADALA+A+CH +H
Sbjct: 121 RQVQLMVQTLLNLEEYPKPDDAADALAVAICHLHH 155


>gi|187611519|sp|A5CES8|RUVC_ORITB RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
          Length = 159

 Score =  177 bits (449), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 54/149 (36%), Positives = 85/149 (57%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + I+GIDP L  TGWG++ ++   + ++ SG I +  + SL  +L  +   +  +I  + 
Sbjct: 1   MIILGIDPSLVSTGWGVISISDSMVNYIDSGVIKTVSKDSLVLKLGNISLMIEKLITRFN 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P   A+E+VF+NK+  +++ L QAR   +       I  SEYAPN IKKA++G G  +K 
Sbjct: 61  PFHVAMEEVFINKNYSSSVTLIQARGAIMSVIGRYNIDFSEYAPNKIKKAIVGAGKAEKH 120

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVC 153
           Q+  M+K+LM       KD +DALA A  
Sbjct: 121 QVQQMVKLLMHIKKAISKDESDALATAYT 149


>gi|34580887|ref|ZP_00142367.1| crossover junction endodeoxyribonuclease RuvC [Rickettsia sibirica
           246]
 gi|238650707|ref|YP_002916560.1| Holliday junction resolvase [Rickettsia peacockii str. Rustic]
 gi|259495694|sp|C4K1R1|RUVC_RICPU RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|28262272|gb|EAA25776.1| crossover junction endodeoxyribonuclease RuvC [Rickettsia sibirica
           246]
 gi|238624805|gb|ACR47511.1| Holliday junction resolvase [Rickettsia peacockii str. Rustic]
          Length = 157

 Score =  177 bits (449), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 54/150 (36%), Positives = 84/150 (56%), Gaps = 1/150 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + I+GIDP L   GW +V      L +++SG I +  + ++  RL  +   L  VI  ++
Sbjct: 1   MIILGIDPALGSLGWAVVAKETAQLKYLASGIIRTNSKDAIHHRLAFINSTLEKVILEYQ 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P  AA+E+ FVN ++V +LKLG AR   +       + + E+ PNT+KK V G GH +K 
Sbjct: 61  PNMAAIEETFVNTNSVTSLKLGYARGAIMSLIGRYNLDMREFKPNTVKKTVTGYGHAEKD 120

Query: 125 QIHMMLKMLM-PESFFKGKDAADALAIAVC 153
           Q+  M+K+L+   +     D ADA+AIA  
Sbjct: 121 QMLHMIKLLLSGTALITNSDEADAVAIAYT 150


>gi|294790876|ref|ZP_06756034.1| crossover junction endodeoxyribonuclease RuvC [Scardovia inopinata
           F0304]
 gi|294458773|gb|EFG27126.1| crossover junction endodeoxyribonuclease RuvC [Scardovia inopinata
           F0304]
          Length = 192

 Score =  177 bits (449), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 48/155 (30%), Positives = 80/155 (51%), Gaps = 2/155 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           + I G+DPGL R G G ++  A   L F+    + S        RL  ++ GL+  +  +
Sbjct: 1   MIICGVDPGLTRCGIGFIEAGASHRLSFIHVDLVRSSPHDPQDARLLAIFNGLSRQLDTY 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P+  ++E+VF  ++    L   QA  +A+++ A   IPV+ + P   K AV G G  +K
Sbjct: 61  LPDVVSIERVFAQENRNTVLGTAQAAGLAMVAAAQRGIPVALHTPTEAKLAVTGNGKANK 120

Query: 124 KQIHMMLKMLMPESFFK-GKDAADALAIAVCHAYH 157
            Q+  M+  ++  +      DAAD+LA+A+CHA  
Sbjct: 121 AQVQTMVAKILSLNALPSPPDAADSLALAICHALR 155


>gi|319442166|ref|ZP_07991322.1| Holliday junction resolvase [Corynebacterium variabile DSM 44702]
          Length = 185

 Score =  177 bits (449), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 43/141 (30%), Positives = 71/141 (50%), Gaps = 1/141 (0%)

Query: 3   KSIRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           + +R++GIDPGL R G  +V    G  +  V+ G + +     L  RL +L   + + + 
Sbjct: 2   QGLRVMGIDPGLTRCGLSVVQAGHGRAVLPVAVGVVRTPHEIPLQERLLRLSVAVEEWMD 61

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
           ++ PE  A+E+VF   +    +    A  + +LS A   IPV +Y P+  KKA+ G G  
Sbjct: 62  DYSPEVVAIERVFERGNVSTVMNTAHAVGVLMLSAARRGIPVHQYTPSEAKKALTGNGRA 121

Query: 122 DKKQIHMMLKMLMPESFFKGK 142
           DKKQ+  M+  ++  S     
Sbjct: 122 DKKQMTSMVTRILGLSEPPRP 142


>gi|313143576|ref|ZP_07805769.1| crossover junction endodeoxyribonuclease ruvC [Helicobacter cinaedi
           CCUG 18818]
 gi|313128607|gb|EFR46224.1| crossover junction endodeoxyribonuclease ruvC [Helicobacter cinaedi
           CCUG 18818]
          Length = 171

 Score =  177 bits (449), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 50/162 (30%), Positives = 80/162 (49%), Gaps = 8/162 (4%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAG------DNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTD 58
           + I+GIDPG R  G+ I+ +A        +L  + +G I     +SL  ++ +  EG+  
Sbjct: 2   MYILGIDPGSRNCGYAIIQMADANMHLKGSLKLIEAGIIK-IKERSLQHQIVEFVEGIDM 60

Query: 59  VIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGV 118
           V+K    +E A+E +F   +  + +KL Q R    L         +EY P  +KKA+ G 
Sbjct: 61  VLKLHHIDEVAIEDIFFAYNPKSVIKLAQFRGALSLKILQEIGNFAEYTPLQVKKAITGN 120

Query: 119 GHGDKKQIHMMLKMLMP-ESFFKGKDAADALAIAVCHAYHAN 159
           G  DK Q+  M+K ++  +   K  D  DALAIA+ H+    
Sbjct: 121 GKADKAQVAFMVKKILGIKGEIKPLDITDALAIAITHSQRVG 162


>gi|192362195|ref|YP_001981525.1| Holliday junction resolvase [Cellvibrio japonicus Ueda107]
 gi|190688360|gb|ACE86038.1| crossover junction endodeoxyribonuclease RuvC [Cellvibrio japonicus
           Ueda107]
          Length = 196

 Score =  177 bits (449), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 56/135 (41%), Positives = 85/135 (62%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R+TG+GI+++ G    +V+SG I       L  RL  +++ LT +I+ + P+
Sbjct: 27  ILGIDPGSRKTGFGIINLLGGKSEYVTSGVIRMRDDDELPVRLKVIFDSLTQIIERYTPQ 86

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+EQVF+ K+A + LKLGQAR  AI++ A   +PVSEY    +K++V+G G  DK Q+
Sbjct: 87  EMAIEQVFMAKNAASALKLGQARGAAIVAAAAQNLPVSEYEARKVKQSVVGNGAADKLQV 146

Query: 127 HMMLKMLMPESFFKG 141
             M+K L+       
Sbjct: 147 QHMVKTLLRLPAAPQ 161


>gi|239948354|ref|ZP_04700107.1| crossover junction endodeoxyribonuclease RuvC [Rickettsia
           endosymbiont of Ixodes scapularis]
 gi|239922630|gb|EER22654.1| crossover junction endodeoxyribonuclease RuvC [Rickettsia
           endosymbiont of Ixodes scapularis]
          Length = 172

 Score =  177 bits (449), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 56/156 (35%), Positives = 86/156 (55%), Gaps = 1/156 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + ++GIDP L   GW +V      L +++SG I +  +  +  RL  +   L  VI  ++
Sbjct: 16  MIVLGIDPALGSLGWAVVAKETAKLKYLASGIIKTNSKDEIHHRLAFINSTLEKVILEYQ 75

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P  AA+E+ FVN ++V +LKLG AR   +       + + E+ PNT+KK V G GH +K 
Sbjct: 76  PNMAAIEETFVNTNSVTSLKLGYARGAIMSLIGRYNLGLREFKPNTVKKTVTGYGHAEKD 135

Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHAN 159
           QI  M+K+L+P  S     D AD++AIA  +    N
Sbjct: 136 QILHMIKLLLPGTSLITNSDEADSVAIAYTYLVTKN 171


>gi|221194795|ref|ZP_03567852.1| crossover junction endodeoxyribonuclease RuvC [Atopobium rimae ATCC
           49626]
 gi|221185699|gb|EEE18089.1| crossover junction endodeoxyribonuclease RuvC [Atopobium rimae ATCC
           49626]
          Length = 167

 Score =  177 bits (449), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 43/139 (30%), Positives = 77/139 (55%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + I+G+DPGL  TGWGIV+  G      + G + +   + +  RL ++Y+ L+ VI+ + 
Sbjct: 1   MVILGVDPGLAHTGWGIVETRGSVCRARAYGCVETKAHEPIDMRLGRIYDELSRVIQKYE 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P   ++E ++  ++  + +   QAR  AI++ + A + V EY P  IK+AV+G G  DK 
Sbjct: 61  PTALSIEGIYFGQNVRSAIPTAQARGAAIVACSKAGLTVGEYTPMQIKQAVVGTGSADKA 120

Query: 125 QIHMMLKMLMPESFFKGKD 143
           Q+  M++ ++        D
Sbjct: 121 QVMYMIRSVLALDHEPHPD 139


>gi|291286412|ref|YP_003503228.1| crossover junction endodeoxyribonuclease RuvC [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290883572|gb|ADD67272.1| crossover junction endodeoxyribonuclease RuvC [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 158

 Score =  176 bits (448), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 48/147 (32%), Positives = 76/147 (51%), Gaps = 1/147 (0%)

Query: 8   IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEE 67
           +G+DPGL  TG GIV V    + +V+   + +  +  L  RL  +  G+   +  ++P  
Sbjct: 1   MGVDPGLNCTGIGIVQVWPGKVEYVAHEVVRTDSKDPLPVRLGVICGGIRSALAEYKPSC 60

Query: 68  AAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIH 127
           +AVE VF + +  + + LGQ R   I +     I V E+    IKKAV+G G  DK+Q+ 
Sbjct: 61  SAVEDVFYSVNVKSAMLLGQTRGAIIATLLAGDIEVREFTALQIKKAVVGYGKADKQQVK 120

Query: 128 MMLKMLMPESFFK-GKDAADALAIAVC 153
            M+++L+         D  DALA  +C
Sbjct: 121 KMVEVLLGRKMGNVPLDVTDALACGIC 147


>gi|329942437|ref|ZP_08291247.1| crossover junction endodeoxyribonuclease RuvC [Chlamydophila
           psittaci Cal10]
 gi|332287078|ref|YP_004421979.1| Holliday junction resolvase [Chlamydophila psittaci 6BC]
 gi|313847674|emb|CBY16662.1| putative crossover junction endodeoxyribonuclease RuvC
           [Chlamydophila psittaci RD1]
 gi|325507012|gb|ADZ18650.1| Holliday junction resolvase [Chlamydophila psittaci 6BC]
 gi|328815347|gb|EGF85335.1| crossover junction endodeoxyribonuclease RuvC [Chlamydophila
           psittaci Cal10]
          Length = 168

 Score =  176 bits (448), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 55/156 (35%), Positives = 88/156 (56%), Gaps = 4/156 (2%)

Query: 7   IIGIDPGLRRTGWGIVDVAGD-NLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           I+GIDPG   +G+ I+ V     +   S G I    + SL  R  QL++ L+ V+ N  P
Sbjct: 5   IMGIDPGTLVSGYAIILVEQRYKIRAHSYGAIRLSSKDSLTQRYKQLFQTLSGVLDNVTP 64

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
           +   +E  +V+K+  + +KLG  R + +L+ AL  IPV EY PN  K+AV+G G+  K+Q
Sbjct: 65  DAVVLETQYVHKNPQSAIKLGMGRGVLVLAAALRDIPVFEYTPNVAKRAVVGKGNASKQQ 124

Query: 126 IHMMLKMLMPESFFKGK---DAADALAIAVCHAYHA 158
           + +M+  ++           D ADA A+A+CHA+ +
Sbjct: 125 VQLMVSKILNIPDVLNSNCEDIADAFALAICHAHTS 160


>gi|241563433|ref|XP_002401702.1| crossover junction endodeoxyribonuclease ruvC, putative [Ixodes
           scapularis]
 gi|215501894|gb|EEC11388.1| crossover junction endodeoxyribonuclease ruvC, putative [Ixodes
           scapularis]
          Length = 159

 Score =  176 bits (448), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 56/156 (35%), Positives = 86/156 (55%), Gaps = 1/156 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + ++GIDP L   GW +V      L +++SG I +  +  +  RL  +   L  VI  ++
Sbjct: 3   MIVLGIDPALGSLGWAVVAKETAKLKYLASGIIKTNSKDEIHHRLAFINSTLEKVILEYQ 62

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P  AA+E+ FVN ++V +LKLG AR   +       + + E+ PNT+KK V G GH +K 
Sbjct: 63  PNMAAIEETFVNTNSVTSLKLGYARGAIMSLIGRYNLGLREFKPNTVKKTVTGYGHAEKD 122

Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHAN 159
           QI  M+K+L+P  S     D AD++AIA  +    N
Sbjct: 123 QILHMIKLLLPGTSLITNSDEADSVAIAYTYLVTKN 158


>gi|148555056|ref|YP_001262638.1| Holliday junction resolvase [Sphingomonas wittichii RW1]
 gi|166233303|sp|A5V884|RUVC_SPHWW RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|148500246|gb|ABQ68500.1| crossover junction endodeoxyribonuclease RuvC [Sphingomonas
           wittichii RW1]
          Length = 165

 Score =  176 bits (448), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 73/159 (45%), Positives = 106/159 (66%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + +IG DPGL  TGWG++   G+ L  V++G I +     L+ RL  L+  L ++I+ +R
Sbjct: 1   MILIGFDPGLGTTGWGVIAADGNRLSHVANGQIKTEPSMELSRRLYLLHSALAEIIRTYR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           PE AAVE+V  N +A +TLKLGQAR + +L+ ALA + V EY P+ +KKAV+G G  +K+
Sbjct: 61  PEAAAVEEVLGNSNAQSTLKLGQARGVVLLAAALAEVSVGEYHPSIVKKAVVGTGGAEKR 120

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYY 163
           Q+  M+K+L+P +   G DAADALA+AV HA+H  S   
Sbjct: 121 QVQAMVKVLLPGAKLSGPDAADALAVAVTHAHHLASARA 159


>gi|289641362|ref|ZP_06473527.1| crossover junction endodeoxyribonuclease RuvC [Frankia symbiont of
           Datisca glomerata]
 gi|289508824|gb|EFD29758.1| crossover junction endodeoxyribonuclease RuvC [Frankia symbiont of
           Datisca glomerata]
          Length = 177

 Score =  176 bits (448), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 45/139 (32%), Positives = 70/139 (50%), Gaps = 1/139 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           + ++G+DPGL R G G+VD   G     V  G + +     +A RL  L  G+ + +   
Sbjct: 1   MLVLGVDPGLTRCGLGVVDGGPGQQTSLVEVGVLRTPAADDVAARLWALERGVGEWLDRH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P+  AVE+VF   +    +   QA A+AI+S A   +PV+ Y P+ +K +V G G  DK
Sbjct: 61  HPDAVAVERVFSQANVRTVMGTAQAGAVAIVSAARRGLPVALYTPSEVKASVSGSGRADK 120

Query: 124 KQIHMMLKMLMPESFFKGK 142
            Q+  M+  L+  S     
Sbjct: 121 TQVTFMVSRLLGLSDPPRP 139


>gi|56417274|ref|YP_154348.1| holliday (crossover) junction endodeoxyribonuclease [Anaplasma
           marginale str. St. Maries]
 gi|81599081|sp|Q5P9D7|RUVC_ANAMM RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|56388506|gb|AAV87093.1| holliday (crossover) junction endodeoxyribonuclease [Anaplasma
           marginale str. St. Maries]
          Length = 165

 Score =  176 bits (448), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 50/164 (30%), Positives = 90/164 (54%), Gaps = 3/164 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           + IIGIDPGL  TGWG+V       +C + SG I +      + +L ++Y  L  V+  +
Sbjct: 1   MMIIGIDPGLEFTGWGVVSSTNSQSVCLLDSGVISTRGISRESEKLYKIYVSLLSVLSLY 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           + +EA++E+VF+N +  +++ L  ARA + +S     I + EY+   IKK + G G   K
Sbjct: 61  KIDEASIEKVFINSNPRSSMSLCYARAASTISVMSRGIDIYEYSSTAIKKCITGNGMAPK 120

Query: 124 KQIHMMLKMLM--PESFFKGKDAADALAIAVCHAYHANSGYYKI 165
           +Q+  M++  +   +       ++DA+A A+CH Y+  +  + +
Sbjct: 121 EQVSFMVRSSLGIKQDVEINNHSSDAIAAALCHVYNTRNRNFAL 164


>gi|328914312|gb|AEB55145.1| crossover junction endodeoxyribonuclease RuvC [Chlamydophila
           psittaci 6BC]
          Length = 165

 Score =  176 bits (447), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 55/156 (35%), Positives = 88/156 (56%), Gaps = 4/156 (2%)

Query: 7   IIGIDPGLRRTGWGIVDVAGD-NLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           I+GIDPG   +G+ I+ V     +   S G I    + SL  R  QL++ L+ V+ N  P
Sbjct: 2   IMGIDPGTLVSGYAIILVEQRYKIRAHSYGAIRLSSKDSLTQRYKQLFQTLSGVLDNVTP 61

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
           +   +E  +V+K+  + +KLG  R + +L+ AL  IPV EY PN  K+AV+G G+  K+Q
Sbjct: 62  DAVVLETQYVHKNPQSAIKLGMGRGVLVLAAALRDIPVFEYTPNVAKRAVVGKGNASKQQ 121

Query: 126 IHMMLKMLMPESFFKGK---DAADALAIAVCHAYHA 158
           + +M+  ++           D ADA A+A+CHA+ +
Sbjct: 122 VQLMVSKILNIPDVLNSNCEDIADAFALAICHAHTS 157


>gi|161501898|ref|YP_219548.2| Holliday junction resolvase [Chlamydophila abortus S26/3]
          Length = 168

 Score =  176 bits (447), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 55/156 (35%), Positives = 88/156 (56%), Gaps = 4/156 (2%)

Query: 7   IIGIDPGLRRTGWGIVDVAGD-NLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           I+GIDPG   +G+ I+ V     +   S G I    + SL  R  QL++ L+ V+ N  P
Sbjct: 5   IMGIDPGTLVSGYAIILVEQRYKIRAHSYGAIRLSSKDSLTQRYKQLFQTLSGVLDNVTP 64

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
           +   +E  +V+K+  + +KLG  R + +L+ AL  IPV EY PN  K+AV+G G+  K+Q
Sbjct: 65  DAVVLETQYVHKNPQSAIKLGMGRGVLVLAAALRDIPVFEYTPNVAKRAVVGKGNASKQQ 124

Query: 126 IHMMLKMLMPESFFKGK---DAADALAIAVCHAYHA 158
           + +M+  ++           D ADA A+A+CHA+ +
Sbjct: 125 VQLMVSKILNIPDVLNSDCEDIADAFALAICHAHTS 160


>gi|84516660|ref|ZP_01004019.1| Holliday junction resolvase [Loktanella vestfoldensis SKA53]
 gi|84509696|gb|EAQ06154.1| Holliday junction resolvase [Loktanella vestfoldensis SKA53]
          Length = 168

 Score =  176 bits (447), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 87/157 (55%), Positives = 108/157 (68%), Gaps = 1/157 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPGLR  GWG++DVAG  +  V++G I       LA RL  L++ L  +I   R
Sbjct: 1   MRVLGIDPGLRNMGWGLIDVAGSRITHVANG-IAHSTGDDLAMRLLSLHDQLAAMIALHR 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P +AAVEQ FVNKD V TLKLGQAR IA+L  A A + + EYAPN IKKAV+GVGH DK 
Sbjct: 60  PTQAAVEQTFVNKDGVGTLKLGQARGIALLVTAQAGLTIGEYAPNAIKKAVVGVGHADKV 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSG 161
           QI  M+K+ +P     G DAADALAIA+CHA+H  S 
Sbjct: 120 QIAHMVKLQLPGVKLAGPDAADALAIAICHAHHLQSA 156


>gi|110679368|ref|YP_682375.1| Holliday junction resolvase [Roseobacter denitrificans OCh 114]
 gi|109455484|gb|ABG31689.1| crossover junction endodeoxyribonuclease RuvC [Roseobacter
           denitrificans OCh 114]
          Length = 187

 Score =  176 bits (447), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 70/137 (51%), Positives = 93/137 (67%), Gaps = 1/137 (0%)

Query: 6   RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           R+IGIDPGLR  GWG+++V+G  +  +++G  V      LA RL  L++ LT V+  + P
Sbjct: 22  RVIGIDPGLRNLGWGVIEVSGSRIAHIANGVCV-SGGSDLADRLLSLHQQLTAVVSTFAP 80

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
           +EAAVEQ FVNKD   TLKLGQAR IA+L PA A + V EYAPN IKK V+GVGH DK Q
Sbjct: 81  DEAAVEQTFVNKDGAGTLKLGQARGIAMLVPAQAGLRVGEYAPNKIKKTVVGVGHADKAQ 140

Query: 126 IHMMLKMLMPESFFKGK 142
           +  M+++ +P +  K  
Sbjct: 141 VLHMVRLQLPGAEIKSP 157


>gi|332664054|ref|YP_004446842.1| Crossover junction endodeoxyribonuclease ruvC [Haliscomenobacter
           hydrossis DSM 1100]
 gi|332332868|gb|AEE49969.1| Crossover junction endodeoxyribonuclease ruvC [Haliscomenobacter
           hydrossis DSM 1100]
          Length = 188

 Score =  176 bits (447), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 43/140 (30%), Positives = 77/140 (55%), Gaps = 3/140 (2%)

Query: 1   MRKSI---RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLT 57
           M + I   RI+G+DPG    G+ I++V G  L  V  G +     +    +L +++E +T
Sbjct: 1   MAEKIENYRILGVDPGTNILGYAILEVNGAELKPVDIGVVYLQKLEDHPQKLKRIFERIT 60

Query: 58  DVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIG 117
            +I  + P   A+E  F  K+  + LKLG+A+ +A+ +     + ++EY+P  IK++V G
Sbjct: 61  SIISQYGPRYLAIEAPFFGKNPQSMLKLGRAQGVAMAAAITKGLEITEYSPKKIKQSVTG 120

Query: 118 VGHGDKKQIHMMLKMLMPES 137
            G+  K+Q+  ML+  +  S
Sbjct: 121 NGNAAKEQVAAMLQNTLKVS 140


>gi|120403559|ref|YP_953388.1| Holliday junction resolvase [Mycobacterium vanbaalenii PYR-1]
 gi|166233273|sp|A1T882|RUVC_MYCVP RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|119956377|gb|ABM13382.1| Holliday junction endonuclease RuvC [Mycobacterium vanbaalenii
           PYR-1]
          Length = 194

 Score =  176 bits (447), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 48/156 (30%), Positives = 82/156 (52%), Gaps = 2/156 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G  +++   G  +  +    + +     LA RL  + + +   +   
Sbjct: 1   MRVMGVDPGLTRCGLSVIESGKGRQVIALDVDVVRTPAGHPLAHRLLAISDAVDHWLDTH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RP+  A+E+VF N++A   +   QA  +  L+ A   I V  + P+ +K AV G G  DK
Sbjct: 61  RPDVIAIERVFSNQNANTAMGTAQAGGVIALAAARRDIDVHFHTPSEVKAAVTGNGRADK 120

Query: 124 KQIHMMLKMLM-PESFFKGKDAADALAIAVCHAYHA 158
            Q+  M+  ++  +      DAADALA+A+CH + A
Sbjct: 121 AQVTEMVTRILALQQKPTPADAADALALAICHCWRA 156


>gi|241767727|ref|ZP_04765346.1| crossover junction endodeoxyribonuclease RuvC [Acidovorax
           delafieldii 2AN]
 gi|241361285|gb|EER57852.1| crossover junction endodeoxyribonuclease RuvC [Acidovorax
           delafieldii 2AN]
          Length = 126

 Score =  176 bits (447), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 55/126 (43%), Positives = 80/126 (63%), Gaps = 2/126 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQ--SLAFRLCQLYEGLTDVIKN 62
           +RI+GIDPGL+ TG+G++DV G  L +V+SGTI +       L  RL  L++G+++V   
Sbjct: 1   MRILGIDPGLQTTGFGLIDVDGHRLSYVASGTIRTTALALGDLPGRLKVLFDGISEVAAR 60

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
           + P+ A VE VFVN +  +TL LGQAR  AI +   + +PV+EY    +KKAV+G G   
Sbjct: 61  YEPDVATVEIVFVNVNPQSTLLLGQARGAAITALVASNLPVAEYTALQMKKAVVGHGRAA 120

Query: 123 KKQIHM 128
           K Q+  
Sbjct: 121 KAQVQE 126


>gi|89898694|ref|YP_515804.1| Holliday junction resolvase [Chlamydophila felis Fe/C-56]
 gi|123722295|sp|Q252X9|RUVC_CHLFF RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|89332066|dbj|BAE81659.1| holliday junction nuclease [Chlamydophila felis Fe/C-56]
          Length = 168

 Score =  176 bits (447), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 56/157 (35%), Positives = 92/157 (58%), Gaps = 4/157 (2%)

Query: 7   IIGIDPGLRRTGWGIVDVAGD-NLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           I+GIDPG   +G+ I+ V     +   S G I    + SL  R  QL++ ++ V+ +  P
Sbjct: 5   IMGIDPGTLVSGYAIILVEQRYKIRAHSYGAIRLSSKDSLTQRYKQLFQTISGVLNDITP 64

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
           +   +E  +V+K+  +T+KLG AR + +L+ AL  IPV EYAPN  K+AV+G G+  K+Q
Sbjct: 65  DAVVLETQYVHKNPQSTIKLGMARGVLVLAAALRDIPVFEYAPNVAKRAVVGRGNASKQQ 124

Query: 126 IHMMLKMLMPESFFKGK---DAADALAIAVCHAYHAN 159
           + +M+  ++           D ADA A+A+CHA+ ++
Sbjct: 125 VQLMVSKMLNIPDVLNANCEDIADAFALAICHAHTSS 161


>gi|68536133|ref|YP_250838.1| Holliday junction resolvase [Corynebacterium jeikeium K411]
 gi|68263732|emb|CAI37220.1| crossover junction endodeoxyribonuclease [Corynebacterium jeikeium
           K411]
          Length = 187

 Score =  175 bits (446), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 35/139 (25%), Positives = 67/139 (48%), Gaps = 1/139 (0%)

Query: 3   KSIRIIGIDPGLRRTGWGIVDVAGDNLCF-VSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
             +R++GIDPGL R G  +V        + V+ G + +     +  RL +L++ +     
Sbjct: 20  AGLRVMGIDPGLTRCGLSVVQAGKGRAVYPVAVGVVRTPSDMPVEQRLNKLFDAVEQWFD 79

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
           +++P   A+E+VF   +    +    A  + +L+ A   + V  Y P+ +KK++ G G  
Sbjct: 80  DYQPHVVALERVFERSNVSTVMNTAHASGVLMLAAARRGVDVHMYTPSEVKKSISGNGRA 139

Query: 122 DKKQIHMMLKMLMPESFFK 140
           DK Q+  M+  ++  S   
Sbjct: 140 DKAQMTRMITRILGLSEAP 158


>gi|297183450|gb|ADI19582.1| holliday junction resolvasome, endonuclease subunit [uncultured
           Acidobacteria bacterium HF0770_27F21]
          Length = 167

 Score =  175 bits (446), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 61/168 (36%), Positives = 95/168 (56%), Gaps = 1/168 (0%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M +S+RI+G+DPG R TG+ ++DV G ++  V+ G +    ++ ++ RL QL   L  + 
Sbjct: 1   MPESVRILGVDPGSRFTGYAVIDVFGADVNVVAYGVLKLPQKKPVSERLKQLDMLLRQLG 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
           +   P E  VE+ FV  +A + L L Q R +AI++   A  PV EY+   +KKAV+G G 
Sbjct: 61  EEHCPGEVVVEEAFVAVNARSALVLAQVRGVAIVAAG-ASCPVFEYSARAVKKAVVGYGQ 119

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
            DK Q+  M+K L+       +DAADALA+ +CH Y          ++
Sbjct: 120 ADKGQVVQMVKTLLHLPEAPPQDAADALALVLCHMYSRRFAARLEGAR 167


>gi|51473230|ref|YP_066987.1| Holliday junction resolvase [Rickettsia typhi str. Wilmington]
 gi|81610846|sp|Q68XY7|RUVC_RICTY RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|51459542|gb|AAU03505.1| Holliday junction nuclease [Rickettsia typhi str. Wilmington]
          Length = 157

 Score =  175 bits (446), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 54/150 (36%), Positives = 84/150 (56%), Gaps = 1/150 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + ++GIDP L   GW +V      L +++SGTI +  +  +  RL  +   L  VI  ++
Sbjct: 1   MIVLGIDPALGNLGWALVAKEYTKLKYLASGTIKTHSKDEIHNRLAFINSTLEKVILKYQ 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P  AA+E+ F+N ++V +LKLG AR   +       + + E+ PNT+KK V G GH  K+
Sbjct: 61  PNIAAIEETFINTNSVTSLKLGYARGAIMSLIGRYNLNMQEFKPNTVKKTVTGYGHAKKE 120

Query: 125 QIHMMLKMLMPES-FFKGKDAADALAIAVC 153
           QI  M+K L+P +      D ADA+A+A  
Sbjct: 121 QILYMIKHLIPGTDLITNSDEADAVALAYT 150


>gi|296445109|ref|ZP_06887069.1| crossover junction endodeoxyribonuclease RuvC [Methylosinus
           trichosporium OB3b]
 gi|296257283|gb|EFH04350.1| crossover junction endodeoxyribonuclease RuvC [Methylosinus
           trichosporium OB3b]
          Length = 179

 Score =  175 bits (446), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 81/160 (50%), Positives = 113/160 (70%), Gaps = 1/160 (0%)

Query: 2   RKSIRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
            ++IRI+G+DPGLR TGWGI++ + G  L FV+ G++ S    +LA RL QL  GL ++I
Sbjct: 9   NETIRILGVDPGLRNTGWGIIEASRGSRLSFVACGSLHSDGDAALAERLAQLQRGLAEII 68

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
               P EAAVE+ FVN+D  + LKLG AR +A+ +PALA + V+EYA N +KK V+G GH
Sbjct: 69  TAHSPHEAAVEETFVNRDPQSALKLGLARGVALAAPALAGLEVAEYAANLVKKTVVGNGH 128

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
            +K Q+ MM+++L+P S  +  DAADALA+A+CHA H  S
Sbjct: 129 AEKAQVAMMVRVLLPASRAESADAADALAVAICHAQHRAS 168


>gi|81313057|sp|Q5L6Z4|RUVC_CHLAB RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|62147830|emb|CAH63576.1| putative crossover junction endodeoxyribonuclease RuvC
           [Chlamydophila abortus S26/3]
          Length = 165

 Score =  175 bits (446), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 55/156 (35%), Positives = 88/156 (56%), Gaps = 4/156 (2%)

Query: 7   IIGIDPGLRRTGWGIVDVAGD-NLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           I+GIDPG   +G+ I+ V     +   S G I    + SL  R  QL++ L+ V+ N  P
Sbjct: 2   IMGIDPGTLVSGYAIILVEQRYKIRAHSYGAIRLSSKDSLTQRYKQLFQTLSGVLDNVTP 61

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
           +   +E  +V+K+  + +KLG  R + +L+ AL  IPV EY PN  K+AV+G G+  K+Q
Sbjct: 62  DAVVLETQYVHKNPQSAIKLGMGRGVLVLAAALRDIPVFEYTPNVAKRAVVGKGNASKQQ 121

Query: 126 IHMMLKMLMPESFFKGK---DAADALAIAVCHAYHA 158
           + +M+  ++           D ADA A+A+CHA+ +
Sbjct: 122 VQLMVSKILNIPDVLNSDCEDIADAFALAICHAHTS 157


>gi|224373800|ref|YP_002608172.1| Holliday junction resolvase [Nautilia profundicola AmH]
 gi|254767480|sp|B9L734|RUVC_NAUPA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|223589637|gb|ACM93373.1| crossover junction endodeoxyribonuclease RuvC [Nautilia
           profundicola AmH]
          Length = 154

 Score =  175 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 47/154 (30%), Positives = 77/154 (50%), Gaps = 4/154 (2%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++I+GIDPG  + G+ I++     L  + +G I     + L ++L QL EG+  +  +  
Sbjct: 1   MKILGIDPGTIKCGYAIIETK-PKLTLIDAGFIK-ITEKELQYQLSQLIEGIDMIYDS-S 57

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
            +E A+E +F   +    LKL Q R    L         SEY P  +K+AV G G   K+
Sbjct: 58  IDEVAIEDIFFAYNPKTVLKLAQFRGALSLRILQIHGNFSEYTPLQVKRAVTGNGKAKKE 117

Query: 125 QIHMMLKMLMPESF-FKGKDAADALAIAVCHAYH 157
           Q+  M+K ++      K  D  DA+A+A+ H+  
Sbjct: 118 QVAFMVKRILGIKGDIKPLDITDAIAVAITHSQR 151


>gi|149175962|ref|ZP_01854579.1| crossover junction endodeoxyribonuclease ruvC [Planctomyces maris
           DSM 8797]
 gi|148845116|gb|EDL59462.1| crossover junction endodeoxyribonuclease ruvC [Planctomyces maris
           DSM 8797]
          Length = 170

 Score =  175 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 48/158 (30%), Positives = 82/158 (51%), Gaps = 2/158 (1%)

Query: 2   RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
             ++R +GIDPGL RTG+ ++  +         G I S    +LA R+ ++  G+ +VI 
Sbjct: 7   TTAVRFLGIDPGLNRTGYALLQQSVKGPVLCEGGIIRSNQEANLAARVHEIASGIREVIA 66

Query: 62  NWRPEEAAVEQVFVN-KDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
            ++P+   +EQVF   +   +++ +  AR   + +   A +PV  Y P  IKK + G G 
Sbjct: 67  EYQPDVMVIEQVFTTPRFPKSSIIMAHARGAILFAAHDAGVPVVHYTPTQIKKLITGSGR 126

Query: 121 GDKKQIHMMLKM-LMPESFFKGKDAADALAIAVCHAYH 157
             K+Q+   +K  L  ++  +  D ADA A A+CH + 
Sbjct: 127 ASKEQMQHAIKTELGLKAILEPNDVADAFAAALCHYHT 164


>gi|305681296|ref|ZP_07404103.1| crossover junction endodeoxyribonuclease RuvC [Corynebacterium
           matruchotii ATCC 14266]
 gi|305659501|gb|EFM49001.1| crossover junction endodeoxyribonuclease RuvC [Corynebacterium
           matruchotii ATCC 14266]
          Length = 235

 Score =  175 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 39/137 (28%), Positives = 71/137 (51%), Gaps = 1/137 (0%)

Query: 3   KSIRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           + +R++GIDPGL R G  +V    G ++  V+ G + +     +A RL +L E   D + 
Sbjct: 19  EGMRVMGIDPGLTRCGLSVVQAGRGRSVIPVAVGVVRTPSDSDIAHRLLELSEAANDWLD 78

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
            ++P+  A+E++F   +    +       + +L+ A   I V  Y P+ +KKA+ G G  
Sbjct: 79  QYQPDVVAIERIFERGNVSTVMNTAHGVGVLMLAAAQRGIDVHLYTPSEVKKAISGNGRA 138

Query: 122 DKKQIHMMLKMLMPESF 138
           DKKQ+  M+  ++  + 
Sbjct: 139 DKKQMTAMITRILGLTE 155


>gi|254487410|ref|ZP_05100615.1| crossover junction endodeoxyribonuclease RuvC [Roseobacter sp.
           GAI101]
 gi|214044279|gb|EEB84917.1| crossover junction endodeoxyribonuclease RuvC [Roseobacter sp.
           GAI101]
          Length = 168

 Score =  175 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 92/162 (56%), Positives = 111/162 (68%), Gaps = 1/162 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           IR+IGIDPGLR  GWGI+DVAG  L  V++G  VS     L  RL  L+  LT +IK + 
Sbjct: 2   IRVIGIDPGLRNMGWGIIDVAGSRLSHVANGVCVSE-GPDLGSRLLSLHGQLTRIIKTYH 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ AAVEQ FVNKD   TLKLGQAR IA+L PA A + V EYAPNT+KK V+GVGH DK 
Sbjct: 61  PQAAAVEQTFVNKDGAGTLKLGQARGIAMLVPAQAGLAVGEYAPNTVKKTVVGVGHADKG 120

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
           Q+  M+KM +P +   G DAADALAIA+CHA+H  +     A
Sbjct: 121 QVLHMVKMQLPGAEIVGPDAADALAIAICHAHHGGASTLAQA 162


>gi|222475638|ref|YP_002564055.1| holliday (crossover) junction endodeoxyribonuclease (ruvC)
           [Anaplasma marginale str. Florida]
 gi|254767456|sp|B9KH95|RUVC_ANAMF RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|222419776|gb|ACM49799.1| holliday (crossover) junction endodeoxyribonuclease (ruvC)
           [Anaplasma marginale str. Florida]
          Length = 165

 Score =  175 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 50/164 (30%), Positives = 90/164 (54%), Gaps = 3/164 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           + IIGIDPGL  TGWG+V       +C + SG I +      + +L ++Y  L  V+  +
Sbjct: 1   MMIIGIDPGLEFTGWGVVSSTNSQSVCLLDSGVISTRGISRESEKLYKIYVSLLSVLSLY 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           + +EA++E+VF+N +  +++ L  ARA + +S     I + EY+   IKK + G G   K
Sbjct: 61  KIDEASIEKVFINSNPRSSMSLCYARAASTISVMSRGIDIYEYSSTAIKKCITGSGMAPK 120

Query: 124 KQIHMMLKMLM--PESFFKGKDAADALAIAVCHAYHANSGYYKI 165
           +Q+  M++  +   +       ++DA+A A+CH Y+  +  + +
Sbjct: 121 EQVSFMVRSSLGIKQDVEINNHSSDAIAAALCHVYNTRNRNFAL 164


>gi|254448977|ref|ZP_05062431.1| crossover junction endodeoxyribonuclease RuvC [gamma
           proteobacterium HTCC5015]
 gi|198261371|gb|EDY85662.1| crossover junction endodeoxyribonuclease RuvC [gamma
           proteobacterium HTCC5015]
          Length = 194

 Score =  175 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 52/137 (37%), Positives = 81/137 (59%), Gaps = 1/137 (0%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M ++ RI+GIDPG    G G+V+VA      +    + +     L  RL  + E +  VI
Sbjct: 1   MAETRRILGIDPGSVTMGLGVVEVASSRQAHLYHAAVKT-GGGELPKRLGVIVEAVAQVI 59

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             W+P+E A+E+VFV+ +A++ LKLGQAR  AI +   A++PVSEY+   +K++V+G G 
Sbjct: 60  VEWQPDEVAIEEVFVSANAMSALKLGQARGAAICAAVQAQLPVSEYSARQVKQSVVGTGA 119

Query: 121 GDKKQIHMMLKMLMPES 137
             K Q+  M+K L+   
Sbjct: 120 ASKDQVQHMVKALLQLE 136


>gi|83859807|ref|ZP_00953327.1| RuvC Holliday junction nuclease [Oceanicaulis alexandrii HTCC2633]
 gi|83852166|gb|EAP90020.1| RuvC Holliday junction nuclease [Oceanicaulis alexandrii HTCC2633]
          Length = 165

 Score =  175 bits (444), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 77/160 (48%), Positives = 104/160 (65%), Gaps = 1/160 (0%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M  +IRI+GIDPGL  TGWG++D  G  L  VS G I +  +  +A RL  +Y  + +++
Sbjct: 1   MSSAIRILGIDPGLNATGWGVIDQTGSRLSLVSYGVIKAPSKAPMAERLTVIYNAIEELV 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
              +P EAAVE  FV+  AV+ LKLGQARA A+L+PA A + V EYAP  +KKAV+G G 
Sbjct: 61  IAHQPHEAAVEDQFVHASAVSALKLGQARAAAMLAPARAGLVVGEYAPKLVKKAVVGTGS 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
            +K Q+  M+ +L+P S      A  ALA+AVCHA+H NS
Sbjct: 121 AEKAQVAAMIAILLPGSKADADAAD-ALAVAVCHAHHRNS 159


>gi|83954483|ref|ZP_00963194.1| Holliday junction resolvase [Sulfitobacter sp. NAS-14.1]
 gi|83840767|gb|EAP79938.1| Holliday junction resolvase [Sulfitobacter sp. NAS-14.1]
          Length = 168

 Score =  175 bits (444), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 88/162 (54%), Positives = 111/162 (68%), Gaps = 1/162 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           IR+IGIDPGLR  GWG++DVAG  +  V++G I       LA RL  L+  LT ++  +R
Sbjct: 2   IRVIGIDPGLRNMGWGVIDVAGSRITHVANG-ICQSEGADLATRLLSLHAQLTRIMVTYR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ AAVEQ FVNKD   TLKLGQAR IA+L PA A + V EYAPNT+KK V+GVGH DK 
Sbjct: 61  PDAAAVEQTFVNKDGAGTLKLGQARGIAMLVPAQAGLAVGEYAPNTVKKTVVGVGHADKG 120

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
           Q+  M++M +P +   G DAADALAIA+CHA+H  +     A
Sbjct: 121 QVLHMVRMQLPGAEIAGPDAADALAIAICHAHHGGASTLAQA 162


>gi|189218505|ref|YP_001939146.1| Holliday junction resolvasome, endonuclease subunit
           [Methylacidiphilum infernorum V4]
 gi|189185363|gb|ACD82548.1| Holliday junction resolvasome, endonuclease subunit
           [Methylacidiphilum infernorum V4]
          Length = 169

 Score =  175 bits (444), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 48/141 (34%), Positives = 78/141 (55%), Gaps = 1/141 (0%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M K +RI+GIDP LR+TG+GI++  G +   +  G IV+      A +L  +YE L  +I
Sbjct: 2   MNKPLRILGIDPALRKTGYGIIESNGTSTRLIDFGVIVTE-HADQARKLRSIYERLLSII 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
           + + PE  A+E +   ++    + +G AR +A+L  +L  +PV EY+P  IK A  G G 
Sbjct: 61  QEYSPEHVAMESIIFVQNRKTAIDMGAARGVALLLFSLKELPVFEYSPRKIKMAATGKGS 120

Query: 121 GDKKQIHMMLKMLMPESFFKG 141
             K+Q+  M++ L+       
Sbjct: 121 ARKEQVSFMIRALLAMDSLPP 141


>gi|29338972|gb|AAO76771.1| crossover junction endodeoxyribonuclease ruvC [Bacteroides
           thetaiotaomicron VPI-5482]
          Length = 169

 Score =  175 bits (444), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 45/153 (29%), Positives = 76/153 (49%), Gaps = 3/153 (1%)

Query: 17  TGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVN 76
            G+G++ V G     ++ G I      +   +L  ++E +  +I+++ P+E A+E  F  
Sbjct: 1   MGYGVLRVKGTKPEMIAMGIIDLRKFANHYLKLRHIHERVLSIIESYLPDELAIEAPFFG 60

Query: 77  KDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLM-- 134
           K+  + LKLG+A+ +A+       IP++EYAP  IK A+ G G   K+Q+  ML+ ++  
Sbjct: 61  KNVQSMLKLGRAQGVAMAVALSRDIPITEYAPLKIKMAITGNGQASKEQVADMLQRMLHF 120

Query: 135 -PESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
             E      DA D LA A CH         +  
Sbjct: 121 PKEEMPTFMDATDGLAAAYCHFLQMGRPAMEKG 153


>gi|297559813|ref|YP_003678787.1| crossover junction endodeoxyribonuclease RuvC [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
 gi|296844261|gb|ADH66281.1| crossover junction endodeoxyribonuclease RuvC [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 185

 Score =  175 bits (444), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 51/161 (31%), Positives = 85/161 (52%), Gaps = 3/161 (1%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDV 59
           MR+ +R++GIDPGL R G   V+ A G  L  + +  + +     L  RL  +  G+ + 
Sbjct: 1   MRR-VRVLGIDPGLTRCGVAAVEGAIGRPLTLLGADAVRTSPDTDLPHRLVGIERGIEEW 59

Query: 60  IKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVG 119
           +  ++P+  AVE+VF   +    +   QA  IA++  A   +PV+ + P+  K A+ G G
Sbjct: 60  LDRYQPDAVAVERVFAQHNLSTVMGTAQASGIALVCAARRGLPVAMHTPSEAKAAITGNG 119

Query: 120 HGDKKQIHMMLKMLMPES-FFKGKDAADALAIAVCHAYHAN 159
             DK Q+  M+  ++      K  DAADA+A+A+CH +   
Sbjct: 120 RADKAQVGTMVARILGLDGPPKPADAADAVALAICHIWRGG 160


>gi|255003631|ref|ZP_05278595.1| holliday (crossover) junction endodeoxyribonuclease [Anaplasma
           marginale str. Puerto Rico]
 gi|255004758|ref|ZP_05279559.1| holliday (crossover) junction endodeoxyribonuclease [Anaplasma
           marginale str. Virginia]
          Length = 164

 Score =  175 bits (444), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 50/162 (30%), Positives = 89/162 (54%), Gaps = 3/162 (1%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           IIGIDPGL  TGWG+V       +C + SG I +      + +L ++Y  L  V+  ++ 
Sbjct: 2   IIGIDPGLEFTGWGVVSSTNSQSVCLLDSGVISTRGISRESEKLYKIYVSLLSVLSLYKI 61

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
           +EA++E+VF+N +  +++ L  ARA + +S     I + EY+   IKK + G G   K+Q
Sbjct: 62  DEASIEKVFINSNPRSSMSLCYARAASTISVMSRGIDIYEYSSTAIKKCITGNGMAPKEQ 121

Query: 126 IHMMLKMLM--PESFFKGKDAADALAIAVCHAYHANSGYYKI 165
           +  M++  +   +       ++DA+A A+CH Y+  +  + +
Sbjct: 122 VSFMVRSSLGIKQDVEINNHSSDAIAAALCHVYNTRNRNFAL 163


>gi|312139493|ref|YP_004006829.1| crossover junction endodeoxyribonuclease ruvc [Rhodococcus equi
           103S]
 gi|325672617|ref|ZP_08152313.1| crossover junction endoribonuclease subunit C [Rhodococcus equi
           ATCC 33707]
 gi|311888832|emb|CBH48144.1| crossover junction endodeoxyribonuclease RuvC [Rhodococcus equi
           103S]
 gi|325556494|gb|EGD26160.1| crossover junction endoribonuclease subunit C [Rhodococcus equi
           ATCC 33707]
          Length = 191

 Score =  175 bits (444), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 55/156 (35%), Positives = 86/156 (55%), Gaps = 2/156 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G+G+VD   G  +  V+   + +     LA RL ++ E   + +  +
Sbjct: 1   MRVLGVDPGLTRCGFGVVDAGRGREVRPVAVDVVRTPPEMELASRLLRISEAADEWLDRF 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RP   AVE+VF   +    +   QA  +  L+ A   IPV  + P+ +K AV G G  DK
Sbjct: 61  RPTVVAVERVFAQHNVRTAMGTAQAGGVVALAAAKRGIPVCFHTPSQVKAAVTGSGTADK 120

Query: 124 KQIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHA 158
           KQ+  M+  ++   +  K  DAADALA+A+CH + A
Sbjct: 121 KQVTAMVTRILGLDTPPKPADAADALALAICHCWRA 156


>gi|153003860|ref|YP_001378185.1| crossover junction endodeoxyribonuclease RuvC [Anaeromyxobacter sp.
           Fw109-5]
 gi|171769467|sp|A7H905|RUVC_ANADF RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|152027433|gb|ABS25201.1| crossover junction endodeoxyribonuclease RuvC [Anaeromyxobacter sp.
           Fw109-5]
          Length = 206

 Score =  174 bits (443), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 62/165 (37%), Positives = 90/165 (54%), Gaps = 1/165 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +  +GIDPG RR G+G+V   G  L  V+SG +     + +A RL ++ +GL +VI+   
Sbjct: 1   MIALGIDPGSRRCGYGVVAREGTRLVVVASGVLAPRAERPVAERLARILDGLAEVIRRAG 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P E ++EQVF      + L LGQAR +A+ + A A +PV EYAP+ +K A  G G   K 
Sbjct: 61  PAECSIEQVFSGASVRSALVLGQARGVALAAAAQAGLPVFEYAPSEVKLAFTGSGRATKD 120

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQD 169
           Q+     ML+  +     D ADALA+AVCH           A ++
Sbjct: 121 QMIRTAHMLLG-ATPGLSDEADALALAVCHLARRAGRLAVPAVRN 164


>gi|229820483|ref|YP_002882009.1| crossover junction endodeoxyribonuclease RuvC [Beutenbergia
           cavernae DSM 12333]
 gi|229566396|gb|ACQ80247.1| crossover junction endodeoxyribonuclease RuvC [Beutenbergia
           cavernae DSM 12333]
          Length = 199

 Score =  174 bits (443), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 48/156 (30%), Positives = 82/156 (52%), Gaps = 2/156 (1%)

Query: 7   IIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           I+GIDPGL R G G+++   G  +  V  G   +     L  RL  + + + + +   +P
Sbjct: 2   ILGIDPGLTRCGIGVIESLPGRRVRLVDVGVATTPAGDPLEARLVSVADRIDEWLDAHQP 61

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
           +  AVE+VF   +        Q   +A+++ A   IPV+ + P+ +K A+ G G  +K Q
Sbjct: 62  DAVAVERVFAQANVRTITGTAQVAGLAMVAAARRGIPVATHTPSEVKAAITGSGRAEKPQ 121

Query: 126 IHMMLKMLMPESF-FKGKDAADALAIAVCHAYHANS 160
           +  M+  L+  +   +  DAADALA+A+CHA+   +
Sbjct: 122 VQEMVARLLALAERPRPADAADALALAICHAWRGGA 157


>gi|302527852|ref|ZP_07280194.1| crossover junction endodeoxyribonuclease RuvC [Streptomyces sp.
           AA4]
 gi|302436747|gb|EFL08563.1| crossover junction endodeoxyribonuclease RuvC [Streptomyces sp.
           AA4]
          Length = 200

 Score =  174 bits (443), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 44/137 (32%), Positives = 71/137 (51%), Gaps = 1/137 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G G+VD   G ++  V+ G + +   Q LA RL  + + +   +  +
Sbjct: 1   MRVLGVDPGLTRCGLGVVDGGKGRSVRPVAVGVVRTPADQDLAQRLLGVADEVERWLDRY 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RPE  AVE+VF   +    +   QA  +  L+ A   +PV  + P+ +K AV G G  DK
Sbjct: 61  RPEAVAVERVFAQHNVRTAMGTAQAGGVVALAAARRGLPVVFHTPSEVKAAVTGSGRADK 120

Query: 124 KQIHMMLKMLMPESFFK 140
            Q+  M+  L+      
Sbjct: 121 AQVTTMVMRLLGLEVKP 137


>gi|320450527|ref|YP_004202623.1| crossover junction endodeoxyribonuclease RuvC [Thermus scotoductus
           SA-01]
 gi|320150696|gb|ADW22074.1| crossover junction endodeoxyribonuclease RuvC [Thermus scotoductus
           SA-01]
          Length = 166

 Score =  174 bits (443), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 44/164 (26%), Positives = 84/164 (51%), Gaps = 4/164 (2%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGD---NLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           + ++GIDPG+   G G+V+V          +    + +  ++    R+ +++  + + + 
Sbjct: 1   MVVLGIDPGITHLGLGVVEVEPKGTLKARLLHGEVVRTSHKEPAQERVGRIHARVKEALA 60

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
            + PE  AVE+ F  +      K+G A    +++   A +PV  Y P  +K+A+ G GH 
Sbjct: 61  RFHPEALAVEEQFFYRQNELAYKVGWALGAVLVAAFEAGVPVYAYGPMQVKQALAGHGHA 120

Query: 122 DKKQIHMMLK-MLMPESFFKGKDAADALAIAVCHAYHANSGYYK 164
            K+++ +M++ +L  +   K    ADALAIA+ HA++A     K
Sbjct: 121 GKEEVALMVRGILGLKEAPKPSHLADALAIALTHAFYAKMQAAK 164


>gi|148284887|ref|YP_001248977.1| Holliday junction resolvase [Orientia tsutsugamushi str. Boryong]
 gi|146740326|emb|CAM80733.1| Crossover junction endodeoxyribonuclease [Orientia tsutsugamushi
           str. Boryong]
          Length = 171

 Score =  174 bits (442), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 54/147 (36%), Positives = 84/147 (57%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDP L  TGWG++ ++   + ++ SG I +  + SL  +L  +   +  +I  + P 
Sbjct: 15  ILGIDPSLVSTGWGVISISDSMVNYIDSGVIKTVSKDSLVLKLGNISLMIEKLITRFNPF 74

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+E+VF+NK+  +++ L QAR   +       I  SEYAPN IKKA++G G  +K Q+
Sbjct: 75  HVAMEEVFINKNYSSSVTLIQARGAIMSVIGRYNIDFSEYAPNKIKKAIVGAGKAEKHQV 134

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVC 153
             M+K+LM       KD +DALA A  
Sbjct: 135 QQMVKLLMHIKKAISKDESDALATAYT 161


>gi|225021301|ref|ZP_03710493.1| hypothetical protein CORMATOL_01320 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224946034|gb|EEG27243.1| hypothetical protein CORMATOL_01320 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 223

 Score =  174 bits (442), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 39/137 (28%), Positives = 71/137 (51%), Gaps = 1/137 (0%)

Query: 3   KSIRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           + +R++GIDPGL R G  +V    G ++  V+ G + +     +A RL +L E   D + 
Sbjct: 7   EGMRVMGIDPGLTRCGLSVVQAGRGRSVIPVAVGVVRTPSDSDIAHRLLELSEAANDWLD 66

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
            ++P+  A+E++F   +    +       + +L+ A   I V  Y P+ +KKA+ G G  
Sbjct: 67  QYQPDVVAIERIFERGNVSTVMNTAHGVGVLMLAAAQRGIDVHLYTPSEVKKAISGNGRA 126

Query: 122 DKKQIHMMLKMLMPESF 138
           DKKQ+  M+  ++  + 
Sbjct: 127 DKKQMTAMITRILGLTE 143


>gi|88808985|ref|ZP_01124494.1| Holliday junction resolvase RuvC [Synechococcus sp. WH 7805]
 gi|88786927|gb|EAR18085.1| Holliday junction resolvase RuvC [Synechococcus sp. WH 7805]
          Length = 154

 Score =  174 bits (442), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 43/138 (31%), Positives = 73/138 (52%), Gaps = 1/138 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGL R G+G+++ AG     +  G I +   +    R+ ++   L  +I+ W 
Sbjct: 1   MRILGIDPGLARVGYGVIETAGGEQTMLDCGIIQTDSGRPEGERMVEIARDLRQLIRAWN 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           PE AAVE+ F  +    T+ + QAR + I++ A   +P+ E+ P  IK+A+ G GH DK 
Sbjct: 61  PELAAVEKFFFYRS-SNTIAVVQARGVVIMTLARFGLPIVEFPPMQIKQALTGHGHADKD 119

Query: 125 QIHMMLKMLMPESFFKGK 142
           ++   +   +        
Sbjct: 120 EVLEAVMRELSLDKPPRP 137


>gi|111221573|ref|YP_712367.1| Holliday junction resolvase [Frankia alni ACN14a]
 gi|122954409|sp|Q0RNU8|RUVC_FRAAA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|111149105|emb|CAJ60788.1| Crossover junction endodeoxyribonuclease ruvC (Holliday junction
           nuclease ruvC) (Holliday juction resolvase ruvC)
           [Frankia alni ACN14a]
          Length = 197

 Score =  174 bits (442), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 46/139 (33%), Positives = 72/139 (51%), Gaps = 1/139 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G G+VD A G     V +G + +     +A RL  + +G+   +   
Sbjct: 1   MRVLGVDPGLTRCGLGVVDGALGSRARLVEAGVVRTPAGAEVADRLRAVADGIDAWLDRT 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RP+  AVE+VF   +    +   QA A+AI+  A   +PV  Y P+ +K AV G G  DK
Sbjct: 61  RPDAVAVEKVFSQANVRTVMGTAQAGAVAIMLAARRDLPVGLYTPSEVKAAVTGSGRADK 120

Query: 124 KQIHMMLKMLMPESFFKGK 142
            Q+  M+  L+  +     
Sbjct: 121 AQVGFMVTRLLGLAEVPRP 139


>gi|3860687|emb|CAA14588.1| CROSSOVER JUNCTION ENDODEOXYRIBONUCLEASE RUVC (ruvC) [Rickettsia
           prowazekii]
          Length = 169

 Score =  174 bits (442), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 54/150 (36%), Positives = 82/150 (54%), Gaps = 1/150 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + ++GIDP L + GW +V      L +++SGTI +  +  +  RL  +   L  VI  ++
Sbjct: 13  MIVLGIDPALGKLGWAVVAKESTKLHYLASGTIKTHSKDEIHNRLAFINSILEKVILEYQ 72

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P  AA+E+ FVN + V +LKLG AR   +       + + E+ PNT+KK V G GH  K+
Sbjct: 73  PNIAAIEETFVNTNNVTSLKLGYARGAIMSLIGRYNLDMQEFKPNTVKKTVTGYGHAGKE 132

Query: 125 QIHMMLKMLM-PESFFKGKDAADALAIAVC 153
           QI  M+K L+         D ADA+A+A  
Sbjct: 133 QILYMIKHLISGTDLITNSDEADAVALAYT 162


>gi|163733513|ref|ZP_02140956.1| crossover junction endodeoxyribonuclease RuvC [Roseobacter
           litoralis Och 149]
 gi|161393301|gb|EDQ17627.1| crossover junction endodeoxyribonuclease RuvC [Roseobacter
           litoralis Och 149]
          Length = 168

 Score =  173 bits (441), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 71/137 (51%), Positives = 94/137 (68%), Gaps = 1/137 (0%)

Query: 6   RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           R+IGIDPGLR  GWG+++++G  +  V++G  V  V   L+ RL  L+E LT V+  + P
Sbjct: 3   RVIGIDPGLRNLGWGVIELSGSRIAHVANGVCV-SVGTELSDRLLSLHEQLTAVVLKFAP 61

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
           +EAAVEQ FVNKD   TLKLGQAR IA+L PA A + V EYAPN IKK V+GVGH DK Q
Sbjct: 62  DEAAVEQTFVNKDGAGTLKLGQARGIAMLVPAQAGLRVGEYAPNKIKKTVVGVGHADKGQ 121

Query: 126 IHMMLKMLMPESFFKGK 142
           +  M+++ +P +  K  
Sbjct: 122 VLHMVRLQLPGAEIKSP 138


>gi|172040614|ref|YP_001800328.1| Holliday junction resolvase [Corynebacterium urealyticum DSM 7109]
 gi|171851918|emb|CAQ04894.1| ruvC [Corynebacterium urealyticum DSM 7109]
          Length = 202

 Score =  173 bits (441), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 41/141 (29%), Positives = 72/141 (51%), Gaps = 4/141 (2%)

Query: 2   RKSI---RIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLT 57
            +S+   R++GIDPGL R G  +V    G  +  V+ G + +     L  RL +LY  ++
Sbjct: 33  AESMVGKRVMGIDPGLTRCGLSVVQAGQGRAVFPVAVGVVRTESHVPLEQRLQRLYRAVS 92

Query: 58  DVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIG 117
           + I ++ P+  A+E+VF   +    +    A  + +L+ A   + V  Y P+ +KKA+ G
Sbjct: 93  EWIADYSPDVVAIERVFERSNVSTVMNTAHASGVLMLAAAERGLAVESYTPSEVKKAISG 152

Query: 118 VGHGDKKQIHMMLKMLMPESF 138
            G  DK Q+  M+  ++  S 
Sbjct: 153 NGRADKAQMTKMITRILGLSE 173


>gi|154707139|ref|YP_001423841.1| Holliday junction resolvase [Coxiella burnetii Dugway 5J108-111]
 gi|164686123|ref|ZP_01946975.2| crossover junction endodeoxyribonuclease RuvC [Coxiella burnetii
           'MSU Goat Q177']
 gi|212219279|ref|YP_002306066.1| Holliday junction resolvase [Coxiella burnetii CbuK_Q154]
 gi|189046062|sp|A9KF42|RUVC_COXBN RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|226698750|sp|B6J504|RUVC_COXB1 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|154356425|gb|ABS77887.1| crossover junction endodeoxyribonuclease [Coxiella burnetii Dugway
           5J108-111]
 gi|164601688|gb|EAX32393.2| crossover junction endodeoxyribonuclease RuvC [Coxiella burnetii
           'MSU Goat Q177']
 gi|212013541|gb|ACJ20921.1| crossover junction endodeoxyribonuclease [Coxiella burnetii
           CbuK_Q154]
          Length = 172

 Score =  173 bits (441), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 58/139 (41%), Positives = 80/139 (57%), Gaps = 2/139 (1%)

Query: 1   MRKSIRII-GIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDV 59
           M    RII GIDPG R TG+GI+   G     ++ G I +    SL FRL Q+   L D+
Sbjct: 1   MDNPRRIIIGIDPGSRITGYGIIWSQGSKQGCIAFGQIKTD-NDSLNFRLHQIERELRDL 59

Query: 60  IKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVG 119
           I   RP EAA+EQVF   +  + LKLGQAR  A+++ A   +PV+EY+   IK+AV+G G
Sbjct: 60  ILIHRPHEAAIEQVFTFHNHQSALKLGQARGAALVATAACALPVAEYSARQIKQAVVGYG 119

Query: 120 HGDKKQIHMMLKMLMPESF 138
              K Q+  M+ +L+    
Sbjct: 120 AATKAQVQHMVHLLLQLEK 138


>gi|256375827|ref|YP_003099487.1| crossover junction endodeoxyribonuclease RuvC [Actinosynnema mirum
           DSM 43827]
 gi|255920130|gb|ACU35641.1| crossover junction endodeoxyribonuclease RuvC [Actinosynnema mirum
           DSM 43827]
          Length = 330

 Score =  173 bits (441), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 40/134 (29%), Positives = 69/134 (51%), Gaps = 1/134 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R+ G+DPGL R G+G+VD   G  +  V+   + +   + L+ RL QL + +   +  +
Sbjct: 1   MRVFGVDPGLTRCGFGVVDGGTGRTVRPVAVDVVRTPADEDLSRRLLQLADAVEVWLDRY 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P+  A+E+VF   +    +   QA  I  L+ A   +PV  + P+ +K AV G G  DK
Sbjct: 61  SPDVVAIERVFSQHNVRTAMGTAQAGGIVALAAARRDLPVEFHTPSEVKAAVTGSGRADK 120

Query: 124 KQIHMMLKMLMPES 137
            Q+  M+  ++   
Sbjct: 121 AQVTAMVTKVLGLK 134


>gi|153808536|ref|ZP_01961204.1| hypothetical protein BACCAC_02831 [Bacteroides caccae ATCC 43185]
 gi|149128858|gb|EDM20075.1| hypothetical protein BACCAC_02831 [Bacteroides caccae ATCC 43185]
          Length = 169

 Score =  173 bits (441), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 46/146 (31%), Positives = 75/146 (51%), Gaps = 3/146 (2%)

Query: 17  TGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVN 76
            G+GI+ + G     V+ G I      +   +L  ++E +  +I+++ P+E A+E  F  
Sbjct: 1   MGYGILRIKGTKPEMVAMGIIDLRKFANHYLKLRHIHERVLSIIESYLPDELAIEAPFFG 60

Query: 77  KDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLM-- 134
           K+  + LKLG+A+ +A+       IP++EYAP  IK A+ G G   K+Q+  ML+ ++  
Sbjct: 61  KNVQSMLKLGRAQGVAMAVALSRDIPITEYAPLKIKMAITGNGQASKEQVADMLQRMLHF 120

Query: 135 -PESFFKGKDAADALAIAVCHAYHAN 159
             E      DA D LA A CH     
Sbjct: 121 SKEDMPTFMDATDGLAAAYCHFLQMG 146


>gi|269795057|ref|YP_003314512.1| Holliday junction endonuclease RuvC [Sanguibacter keddieii DSM
           10542]
 gi|269097242|gb|ACZ21678.1| Holliday junction endonuclease RuvC [Sanguibacter keddieii DSM
           10542]
          Length = 189

 Score =  173 bits (441), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 51/155 (32%), Positives = 84/155 (54%), Gaps = 2/155 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVD-VAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G G+VD V G     V+ G  +S    ++  RL Q+   L   +   
Sbjct: 1   MRVLGVDPGLTRCGIGVVDSVTGRRARLVAVGVAMSPPTDTVDARLLQIATELDAWMDAH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P+  AVE+VF   +    +   Q   +A+++ A   +PV+ + P+ +K AV G G   K
Sbjct: 61  TPDVVAVERVFAQHNVSTVMGTAQVAGLAMVAAARRGVPVAMHTPSEVKAAVTGSGRAGK 120

Query: 124 KQIHMMLKMLMPESF-FKGKDAADALAIAVCHAYH 157
           +Q+  M+  ++  S   +  DAADALA+A+CH + 
Sbjct: 121 EQVQKMVAQILGLSEVPRPADAADALALAICHLWR 155


>gi|62390543|ref|YP_225945.1| Holliday junction resolvase [Corynebacterium glutamicum ATCC 13032]
 gi|41325881|emb|CAF20044.1| CROSSOVER JUNCTION ENDODEOXYRIBONUCLEASE [Corynebacterium
           glutamicum ATCC 13032]
          Length = 213

 Score =  173 bits (441), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 52/153 (33%), Positives = 82/153 (53%), Gaps = 2/153 (1%)

Query: 8   IGIDPGLRRTGWGIVDVAGDNLCF-VSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           +GIDPGL R G  +V        + VS G + +     LA RL +L + + + +  + P+
Sbjct: 1   MGIDPGLTRCGLSVVQAGRGRTVYPVSVGVVRTPPDAELAERLLRLSKAVGEWMDEYTPD 60

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+E+VF   +    +    A  + IL+ A   +PV  Y P+ +KKA+ G G  DKKQ+
Sbjct: 61  VIAIERVFERGNVSTVMNTAHAVGVLILAAAERGLPVHMYTPSEVKKAISGNGRADKKQM 120

Query: 127 HMMLKMLMPE-SFFKGKDAADALAIAVCHAYHA 158
            +M+  ++      K  DAADAL++AVCH + A
Sbjct: 121 TVMITRILGLGEPPKPADAADALSLAVCHCWRA 153


>gi|42523919|ref|NP_969299.1| crossover junction endodeoxyribonuclease RuvC [Bdellovibrio
           bacteriovorus HD100]
 gi|81616889|sp|Q6MKB6|RUVC_BDEBA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|39576126|emb|CAE80292.1| crossover junction endodeoxyribonuclease RuvC [Bdellovibrio
           bacteriovorus HD100]
          Length = 168

 Score =  173 bits (441), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 51/150 (34%), Positives = 86/150 (57%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+G+DPG R TG+G+V VA   +  ++ G IV     +   R+ +L     +V++ ++PE
Sbjct: 5   ILGVDPGSRITGFGVVRVANGKIEHINHGVIVMDGDDAFPRRMTELGSAFREVMEKYKPE 64

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           +  +E++F+ K+A +  KLG AR + +    L    V EYA  ++KK V G G   K+ +
Sbjct: 65  QVVIEKIFLGKNADSAFKLGHARGVIMYEAGLGGAEVQEYATRSVKKGVTGNGGASKEDV 124

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAY 156
             +LK+++        DA+DALA+A  HA+
Sbjct: 125 QAILKVMLSLKTISRIDASDALAMACYHAF 154


>gi|332882727|ref|ZP_08450338.1| crossover junction endodeoxyribonuclease RuvC [Capnocytophaga sp.
           oral taxon 329 str. F0087]
 gi|332679229|gb|EGJ52215.1| crossover junction endodeoxyribonuclease RuvC [Capnocytophaga sp.
           oral taxon 329 str. F0087]
          Length = 167

 Score =  173 bits (441), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 41/144 (28%), Positives = 73/144 (50%), Gaps = 1/144 (0%)

Query: 17  TGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVN 76
            G+GI+ V    +  +    +      +   +L  ++    ++I  + P+E A+E  F  
Sbjct: 1   MGFGIIRVENQQMKLLQLNELQLSKYNNHYIKLGVIFNRTLELIDTYHPDELAIEAPFFG 60

Query: 77  KDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPE 136
           K+  + LKLG+A+ +A+ +     IP++EY P  +K A+ G G   K+Q+  ML+ L+  
Sbjct: 61  KNVQSMLKLGRAQGVAMAAGLSREIPITEYEPKKVKMAITGNGAASKEQVAKMLQQLLGL 120

Query: 137 SFFKGK-DAADALAIAVCHAYHAN 159
                  DA D LA+AVCH ++  
Sbjct: 121 KELPKHFDATDGLAVAVCHYFNTG 144


>gi|161729090|ref|NP_220511.2| Holliday junction resolvase [Rickettsia prowazekii str. Madrid E]
 gi|6685957|sp|Q9ZE29|RUVC_RICPR RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|292571712|gb|ADE29627.1| Crossover junction endodeoxyribonuclease RuvC [Rickettsia
           prowazekii Rp22]
          Length = 157

 Score =  173 bits (441), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 54/150 (36%), Positives = 82/150 (54%), Gaps = 1/150 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + ++GIDP L + GW +V      L +++SGTI +  +  +  RL  +   L  VI  ++
Sbjct: 1   MIVLGIDPALGKLGWAVVAKESTKLHYLASGTIKTHSKDEIHNRLAFINSILEKVILEYQ 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P  AA+E+ FVN + V +LKLG AR   +       + + E+ PNT+KK V G GH  K+
Sbjct: 61  PNIAAIEETFVNTNNVTSLKLGYARGAIMSLIGRYNLDMQEFKPNTVKKTVTGYGHAGKE 120

Query: 125 QIHMMLKMLM-PESFFKGKDAADALAIAVC 153
           QI  M+K L+         D ADA+A+A  
Sbjct: 121 QILYMIKHLISGTDLITNSDEADAVALAYT 150


>gi|312880159|ref|ZP_07739959.1| crossover junction endodeoxyribonuclease RuvC [Aminomonas
           paucivorans DSM 12260]
 gi|310783450|gb|EFQ23848.1| crossover junction endodeoxyribonuclease RuvC [Aminomonas
           paucivorans DSM 12260]
          Length = 171

 Score =  173 bits (440), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 42/135 (31%), Positives = 66/135 (48%)

Query: 8   IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEE 67
           +G+DPGL   G+G+V   GD L     G + +   + L  RL  LYE L      W P  
Sbjct: 10  LGLDPGLGTLGYGLVRQKGDRLLAEEYGVVRTPPGEPLPDRLRMLYEELRRRTGAWHPSV 69

Query: 68  AAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIH 127
            AVE+++  K+      + QAR + +L      +P+ E  P+ +K AV G G  +K+Q+ 
Sbjct: 70  VAVERLYFGKNVTTAEMVWQARGVVLLFATQLGVPLFEPKPSEVKLAVCGNGGAEKRQVQ 129

Query: 128 MMLKMLMPESFFKGK 142
            M++ L+  S     
Sbjct: 130 GMVQCLLGLSELPRP 144


>gi|330444139|ref|YP_004377125.1| crossover junction endodeoxyribonuclease RuvC [Chlamydophila
           pecorum E58]
 gi|328807249|gb|AEB41422.1| crossover junction endodeoxyribonuclease RuvC [Chlamydophila
           pecorum E58]
          Length = 168

 Score =  173 bits (440), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 52/157 (33%), Positives = 88/157 (56%), Gaps = 4/157 (2%)

Query: 7   IIGIDPGLRRTGWGIVDVAGD-NLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           I+G+DPG    G+ I+ V     L   S G +    +  L+ R  +L+  ++ V+++  P
Sbjct: 5   IMGVDPGTIAAGYAILRVEARYQLSAHSYGVVRLSPKLLLSQRYKKLFLEISKVLEDVSP 64

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
           +   +E  FV+K+  +T+KLG AR + +L+ AL  IP+ EY PN  KKAV+G G   K+Q
Sbjct: 65  DVLVLETQFVSKNPQSTIKLGMARGVVLLAAALKEIPIVEYTPNVAKKAVVGRGGASKQQ 124

Query: 126 IHMMLKMLMPESF---FKGKDAADALAIAVCHAYHAN 159
           + +M+  ++          +D ADA A+A+CH +  +
Sbjct: 125 VQLMVSKMLGLPELVQPDCEDIADAFALAICHTHMHS 161


>gi|15605231|ref|NP_220017.1| Holliday junction resolvase [Chlamydia trachomatis D/UW-3/CX]
 gi|166154717|ref|YP_001654835.1| Holliday junction resolvase [Chlamydia trachomatis 434/Bu]
 gi|166155592|ref|YP_001653847.1| Holliday junction resolvase [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|237802931|ref|YP_002888125.1| Holliday junction resolvase [Chlamydia trachomatis B/Jali20/OT]
 gi|237804853|ref|YP_002889007.1| Holliday junction resolvase [Chlamydia trachomatis B/TZ1A828/OT]
 gi|255311320|ref|ZP_05353890.1| Holliday junction resolvase [Chlamydia trachomatis 6276]
 gi|255317621|ref|ZP_05358867.1| Holliday junction resolvase [Chlamydia trachomatis 6276s]
 gi|255348879|ref|ZP_05380886.1| Holliday junction resolvase [Chlamydia trachomatis 70]
 gi|255503419|ref|ZP_05381809.1| Holliday junction resolvase [Chlamydia trachomatis 70s]
 gi|255507097|ref|ZP_05382736.1| Holliday junction resolvase [Chlamydia trachomatis D(s)2923]
 gi|301335991|ref|ZP_07224235.1| Holliday junction resolvase [Chlamydia trachomatis L2tet1]
 gi|6685941|sp|O84510|RUVC_CHLTR RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|226698749|sp|B0BCE1|RUVC_CHLTB RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|238687388|sp|B0B876|RUVC_CHLT2 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|3328939|gb|AAC68103.1| Crossover Junction Endonuclease [Chlamydia trachomatis D/UW-3/CX]
 gi|165930705|emb|CAP04202.1| endodeoxyribonuclease [Chlamydia trachomatis 434/Bu]
 gi|165931580|emb|CAP07156.1| endodeoxyribonuclease [Chlamydia trachomatis L2b/UCH-1/proctitis]
 gi|231273153|emb|CAX10066.1| endodeoxyribonuclease [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231274165|emb|CAX10959.1| endodeoxyribonuclease [Chlamydia trachomatis B/Jali20/OT]
 gi|289525547|emb|CBJ15025.1| endodeoxyribonuclease [Chlamydia trachomatis Sweden2]
 gi|296435107|gb|ADH17285.1| Holliday junction resolvase [Chlamydia trachomatis E/150]
 gi|296436035|gb|ADH18209.1| Holliday junction resolvase [Chlamydia trachomatis G/9768]
 gi|296436963|gb|ADH19133.1| Holliday junction resolvase [Chlamydia trachomatis G/11222]
 gi|296437896|gb|ADH20057.1| Holliday junction resolvase [Chlamydia trachomatis G/11074]
 gi|296438827|gb|ADH20980.1| Holliday junction resolvase [Chlamydia trachomatis E/11023]
 gi|297140396|gb|ADH97154.1| Holliday junction resolvase [Chlamydia trachomatis G/9301]
 gi|297748632|gb|ADI51178.1| RuvC [Chlamydia trachomatis D-EC]
 gi|297749512|gb|ADI52190.1| RuvC [Chlamydia trachomatis D-LC]
          Length = 170

 Score =  173 bits (440), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 55/156 (35%), Positives = 92/156 (58%), Gaps = 4/156 (2%)

Query: 7   IIGIDPGLRRTGWGIVDVAGD-NLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           I+GIDPG    G+ ++ V    ++   S G +    + +LA R  QL+  ++ +++   P
Sbjct: 5   IMGIDPGTLVCGYALIKVENRYHIHPHSFGKVKLSQKLALAHRYKQLFTEISTILQQESP 64

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
           +   +E  +V+K+  +T+KLG AR + +L+ +L  +PV EYAPNT KKA +G G+  KKQ
Sbjct: 65  KAVVLETQYVHKNPQSTIKLGMARGVLLLAASLQDVPVFEYAPNTAKKAAVGKGNASKKQ 124

Query: 126 IHMMLKMLMPESFF---KGKDAADALAIAVCHAYHA 158
           + +M+  L+          +D ADA A+A+CHA+ A
Sbjct: 125 VQLMVSKLLRVPDLLAEDNEDIADAFALAMCHAHLA 160


>gi|88607636|ref|YP_504655.1| crossover junction endodeoxyribonuclease RuvC [Anaplasma
           phagocytophilum HZ]
 gi|123763836|sp|Q2GLU6|RUVC_ANAPZ RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|88598699|gb|ABD44169.1| crossover junction endodeoxyribonuclease RuvC [Anaplasma
           phagocytophilum HZ]
          Length = 163

 Score =  173 bits (440), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 51/161 (31%), Positives = 89/161 (55%), Gaps = 3/161 (1%)

Query: 5   IRIIGIDPGLRRTGWGIV-DVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           + + G+DPGL  TGW +V      +L  + +GTI +     L  +L  ++ GL+ +I+ +
Sbjct: 1   MLVFGLDPGLNYTGWAVVLKEPSGSLSLLDTGTICTTSCSDLNDKLFCIFSGLSAIIQKF 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
               A++E VFVN +  A++ L  ARA ++L+   + + + EY+P  IKK V G G   K
Sbjct: 61  SVSVASIENVFVNLNPKASMFLCYARAASLLACLSSNVKIFEYSPTKIKKCVFGNGRASK 120

Query: 124 KQIHMMLKMLMPESFFK--GKDAADALAIAVCHAYHANSGY 162
           +QI  +++  +  S        A+DA+A A+CH + + + Y
Sbjct: 121 EQIAFVVRSSLGLSEDASFSSHASDAIAAALCHIFSSGNRY 161


>gi|152991596|ref|YP_001357318.1| Holliday junction resolvase [Nitratiruptor sp. SB155-2]
 gi|166233274|sp|A6Q652|RUVC_NITSB RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|151423457|dbj|BAF70961.1| crossover junction endodeoxyribonuclease RuvC [Nitratiruptor sp.
           SB155-2]
          Length = 158

 Score =  173 bits (439), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 46/154 (29%), Positives = 75/154 (48%), Gaps = 2/154 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + I+GIDPG R  G+ IV++   ++  + +G +         ++L Q+ EGL  V  +  
Sbjct: 1   MNILGIDPGSRNLGYAIVELNNSHMKLIEAGLVK-IKPSEFQYQLSQMIEGLDMVFSSHS 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
            +E A+E +F   +    LKL Q R    L         S Y P  +KKA+ G     K+
Sbjct: 60  VDEVAMEDIFYAYNPQTVLKLAQFRGALALRIIQLHGNFSAYTPLQVKKALTGKAKASKE 119

Query: 125 QIHMMLKMLMP-ESFFKGKDAADALAIAVCHAYH 157
           Q+  M+K ++  +   K  D  DA+A+A+ HA  
Sbjct: 120 QVAFMVKKILGIKKEVKPLDITDAMAVAITHAQR 153


>gi|76789239|ref|YP_328325.1| Holliday junction resolvase [Chlamydia trachomatis A/HAR-13]
 gi|91771933|sp|Q3KLJ5|RUVC_CHLTA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|76167769|gb|AAX50777.1| RuvC [Chlamydia trachomatis A/HAR-13]
          Length = 170

 Score =  173 bits (439), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 54/154 (35%), Positives = 91/154 (59%), Gaps = 4/154 (2%)

Query: 7   IIGIDPGLRRTGWGIVDVAGD-NLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           I+GIDPG    G+ ++ V    ++   S G +    + +LA R  QL+  ++ +++   P
Sbjct: 5   IMGIDPGTLVCGYALIKVENRYHIHPHSFGKVKLSQKLALAHRYKQLFTEISTILQQESP 64

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
           +   +E  +V+K+  +T+KLG AR + +L+ +L  +PV EYAPNT KKA +G G+  KKQ
Sbjct: 65  KAVVLETQYVHKNPQSTIKLGMARGVLLLAASLQDVPVFEYAPNTAKKAAVGKGNASKKQ 124

Query: 126 IHMMLKMLMPESFF---KGKDAADALAIAVCHAY 156
           + +M+  L+          +D ADA A+A+CHA+
Sbjct: 125 VQLMVSKLLRVPDLLAEDNEDIADAFALAMCHAH 158


>gi|302206307|gb|ADL10649.1| Crossover junction endodeoxyribonuclease ruvC [Corynebacterium
           pseudotuberculosis C231]
 gi|308276549|gb|ADO26448.1| Crossover junction endodeoxyribonuclease ruvC [Corynebacterium
           pseudotuberculosis I19]
          Length = 193

 Score =  173 bits (439), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 37/140 (26%), Positives = 68/140 (48%), Gaps = 1/140 (0%)

Query: 2   RKSIRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
            + +R++GIDPGL R G  +V    G  +  ++ G + +     L  RL +L +   + +
Sbjct: 3   TEGLRVMGIDPGLTRCGLSVVQAGRGRQVMPIAVGVVRTPPHADLTVRLLELSDAANEWM 62

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             ++P+  A+E++F   +    +       + +L+ A   I V  Y P+  KKA+ G G 
Sbjct: 63  DEYQPDVVAIERIFERGNVSTVMHTAHGVGVLVLAAAQRGIDVHMYTPSEAKKAISGNGR 122

Query: 121 GDKKQIHMMLKMLMPESFFK 140
            DKKQ+  M+  ++  S   
Sbjct: 123 ADKKQMTAMITRILGLSEPP 142


>gi|15835403|ref|NP_297162.1| Holliday junction resolvase [Chlamydia muridarum Nigg]
 gi|270285582|ref|ZP_06194976.1| Holliday junction resolvase [Chlamydia muridarum Nigg]
 gi|270289592|ref|ZP_06195894.1| Holliday junction resolvase [Chlamydia muridarum Weiss]
 gi|301336978|ref|ZP_07225180.1| Holliday junction resolvase [Chlamydia muridarum MopnTet14]
 gi|13431872|sp|Q9PJN9|RUVC_CHLMU RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|7190817|gb|AAF39592.1| Holliday junction resolvase [Chlamydia muridarum Nigg]
          Length = 170

 Score =  172 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 55/156 (35%), Positives = 89/156 (57%), Gaps = 4/156 (2%)

Query: 7   IIGIDPGLRRTGWGIVDVAGD-NLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           I+GIDPG    G+  + V     +   S G I    +Q+L+ R  QL+  ++ +++   P
Sbjct: 5   IMGIDPGTLVCGYAFIRVENRYQIQPHSFGKIKLSQKQALSHRYRQLFTEISTILQREAP 64

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
           +   +E  +V+K+  +T+KLG AR + +L+ +L  I V EYAPNT KKA +G G+  K+Q
Sbjct: 65  KAVVLETQYVHKNPQSTIKLGMARGVLLLAASLQDISVFEYAPNTAKKAAVGKGNASKQQ 124

Query: 126 IHMMLKMLMPESFFKGK---DAADALAIAVCHAYHA 158
           + +M+  L+           D ADA A+A+CHA+ A
Sbjct: 125 VQLMVSKLLNIQDLLADDNEDIADAFALAMCHAHLA 160


>gi|300858595|ref|YP_003783578.1| crossover junction endodeoxyribonuclease [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300686049|gb|ADK28971.1| crossover junction endodeoxyribonuclease [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302330864|gb|ADL21058.1| Crossover junction endodeoxyribonuclease ruvC [Corynebacterium
           pseudotuberculosis 1002]
          Length = 193

 Score =  172 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 37/140 (26%), Positives = 68/140 (48%), Gaps = 1/140 (0%)

Query: 2   RKSIRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
            + +R++GIDPGL R G  +V    G  +  ++ G + +     L  RL +L +   + +
Sbjct: 3   TEGLRVMGIDPGLTRCGLSVVQAGRGRQVMPIAVGVVRTPPHADLTVRLLELSDTANEWM 62

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             ++P+  A+E++F   +    +       + +L+ A   I V  Y P+  KKA+ G G 
Sbjct: 63  DEYQPDVVAIERIFERGNVSTVMHTAHGVGVLVLAAAQRGIDVHMYTPSEAKKAISGNGR 122

Query: 121 GDKKQIHMMLKMLMPESFFK 140
            DKKQ+  M+  ++  S   
Sbjct: 123 ADKKQMTAMITRILGLSEPP 142


>gi|149375110|ref|ZP_01892882.1| Holliday junction resolvase [Marinobacter algicola DG893]
 gi|149360474|gb|EDM48926.1| Holliday junction resolvase [Marinobacter algicola DG893]
          Length = 172

 Score =  172 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 67/160 (41%), Positives = 102/160 (63%), Gaps = 2/160 (1%)

Query: 8   IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEE 67
           +G+DPG R TG+GIV   G  + ++ SG I     + +A RL  ++  L  +I  +RPEE
Sbjct: 1   MGVDPGSRITGYGIVRAEGRVIEYIDSGCIR-VGEKPMAERLQTIFHSLATLIGEYRPEE 59

Query: 68  AAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIH 127
            A+EQVF+ ++  + LKLGQAR  AI++ A + + V EY+   +K+AV+G G  DK Q+ 
Sbjct: 60  FAIEQVFMARNPDSALKLGQARGAAIVAAANSGLAVHEYSARQVKQAVVGKGGADKAQVQ 119

Query: 128 MMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
            M+++L+  S     DAADALAIA+CHA+ + S   ++AS
Sbjct: 120 HMVQVLLALSRKPQADAADALAIALCHAHMSQS-VARLAS 158


>gi|311739558|ref|ZP_07713393.1| crossover junction endoribonuclease subunit C [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311305374|gb|EFQ81442.1| crossover junction endoribonuclease subunit C [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 221

 Score =  172 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 40/139 (28%), Positives = 70/139 (50%), Gaps = 1/139 (0%)

Query: 3   KSIRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           + +R++GIDPGL R G  +V    G  +  VS G + +   + L  RL +L     + + 
Sbjct: 37  EGMRVMGIDPGLTRCGLSVVQAGRGRAILPVSVGVVRTPSDKDLTERLLRLSVAAKEWMD 96

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
           ++ P+  A+E+VF        ++      + +L+ A   IPV  Y P+ +KKA+ G G  
Sbjct: 97  DYSPDVVAIERVFERGQVSTVMQTAHVVGVLVLAAAERDIPVYMYTPSEVKKAISGNGRA 156

Query: 122 DKKQIHMMLKMLMPESFFK 140
           DKKQ+  M+  ++  +   
Sbjct: 157 DKKQMTTMITRILGLTEPP 175


>gi|21220020|ref|NP_625799.1| Holliday junction resolvase [Streptomyces coelicolor A3(2)]
 gi|13431870|sp|Q9L289|RUVC_STRCO RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|6822216|emb|CAB70922.1| crossover junction endodeoxyribonuclease [Streptomyces coelicolor
           A3(2)]
          Length = 188

 Score =  172 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 47/133 (35%), Positives = 72/133 (54%), Gaps = 1/133 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVD-VAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G G+V+ VAG  L  +  G + +     L  RL  + +G+   +   
Sbjct: 1   MRVLGVDPGLTRRGIGVVEGVAGRPLTMIGVGVVRTPADADLGHRLVAVEQGIEQWLDEH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RPE  AVE+VF   +    +   QA A+AIL  +   IPV+ + P+ +K AV G G  DK
Sbjct: 61  RPEFVAVERVFSQHNVRTVMGTAQASAVAILCASRRGIPVALHTPSEVKAAVTGSGRADK 120

Query: 124 KQIHMMLKMLMPE 136
            Q+  M+  L+  
Sbjct: 121 AQVGAMVTRLLRL 133


>gi|52217413|dbj|BAD50006.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides fragilis
           YCH46]
          Length = 169

 Score =  172 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 45/146 (30%), Positives = 76/146 (52%), Gaps = 3/146 (2%)

Query: 17  TGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVN 76
            G+G++ V G     ++ G I      +   +L  ++E +  +I+++ P+E A+E  F  
Sbjct: 1   MGYGVLRVCGTRPEMIAMGIIDLRKFGNHYLKLRHIHERVLSIIESYLPDELAIEAPFFG 60

Query: 77  KDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLM-- 134
           K+  + LKLG+A+ +A+ +     IP++EYAP  IK A+ G G   K+Q+  ML+ ++  
Sbjct: 61  KNVQSMLKLGRAQGVAMAAALSRDIPITEYAPLKIKMAITGNGQASKEQVADMLQRMLHF 120

Query: 135 -PESFFKGKDAADALAIAVCHAYHAN 159
             E      DA D LA A CH     
Sbjct: 121 AKEDMPVFMDATDGLAAAYCHFLQMG 146


>gi|255325097|ref|ZP_05366203.1| crossover junction endodeoxyribonuclease RuvC [Corynebacterium
           tuberculostearicum SK141]
 gi|255297662|gb|EET76973.1| crossover junction endodeoxyribonuclease RuvC [Corynebacterium
           tuberculostearicum SK141]
          Length = 188

 Score =  172 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 40/139 (28%), Positives = 70/139 (50%), Gaps = 1/139 (0%)

Query: 3   KSIRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           + +R++GIDPGL R G  +V    G  +  VS G + +   + L  RL +L     + + 
Sbjct: 4   EGMRVMGIDPGLTRCGLSVVQAGRGRAILPVSVGVVRTPSDKDLTERLLRLSVAAKEWMD 63

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
           ++ P+  A+E+VF        ++      + +L+ A   IPV  Y P+ +KKA+ G G  
Sbjct: 64  DYSPDVVAIERVFERGQVSTVMQTAHVVGVLVLAAAERDIPVYMYTPSEVKKAISGNGRA 123

Query: 122 DKKQIHMMLKMLMPESFFK 140
           DKKQ+  M+  ++  +   
Sbjct: 124 DKKQMTTMITRILGLTEPP 142


>gi|306836242|ref|ZP_07469224.1| crossover junction endoribonuclease subunit C [Corynebacterium
           accolens ATCC 49726]
 gi|304567834|gb|EFM43417.1| crossover junction endoribonuclease subunit C [Corynebacterium
           accolens ATCC 49726]
          Length = 190

 Score =  172 bits (437), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 40/139 (28%), Positives = 70/139 (50%), Gaps = 1/139 (0%)

Query: 3   KSIRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           + +R++GIDPGL R G  +V    G  +  VS G + +   + L  RL +L     + + 
Sbjct: 4   EGMRVMGIDPGLTRCGLSVVQAGRGRAILPVSVGVVRTPSDKDLTERLLRLSVAAKEWMD 63

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
           ++ P+  A+E+VF        ++      + +L+ A   IPV  Y P+ +KKA+ G G  
Sbjct: 64  DYSPDVVAIERVFERGQVSTVMQTAHVVGVLVLAAAERDIPVYMYTPSEVKKAISGNGRA 123

Query: 122 DKKQIHMMLKMLMPESFFK 140
           DKKQ+  M+  ++  +   
Sbjct: 124 DKKQMTTMITRILGLTEPP 142


>gi|239907720|ref|YP_002954461.1| crossover junction endodeoxyribonuclease RuvC [Desulfovibrio
           magneticus RS-1]
 gi|259495684|sp|C4XIK0|RUVC_DESMR RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|239797586|dbj|BAH76575.1| crossover junction endodeoxyribonuclease RuvC [Desulfovibrio
           magneticus RS-1]
          Length = 169

 Score =  172 bits (437), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 55/153 (35%), Positives = 85/153 (55%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+G+DPG R TG+G+V      L  V +G + +  +     RL  ++  + ++I+   P 
Sbjct: 9   ILGLDPGSRATGYGLVRERSGVLELVDAGVVRTTSQPDFPSRLGVIFTAVAELIQRHGPA 68

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E +VE VFV+K+A   LKLGQAR  A+ + A+A + V  Y P  IK++++G G  +K Q+
Sbjct: 69  EVSVENVFVSKNAATALKLGQARGAALAACAVAGLSVHSYEPTVIKQSLVGTGRAEKSQV 128

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHAN 159
             M+  ++        DA DALA AVCH     
Sbjct: 129 AFMVARVLACRETFAVDATDALAAAVCHLNQRR 161


>gi|289523151|ref|ZP_06440005.1| crossover junction endodeoxyribonuclease RuvC [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289503694|gb|EFD24858.1| crossover junction endodeoxyribonuclease RuvC [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 165

 Score =  172 bits (437), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 44/138 (31%), Positives = 74/138 (53%), Gaps = 1/138 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +  +GIDPG+ R G+G V+  G  L  ++ G I +    S+  RL  +Y+ + + I   R
Sbjct: 1   MLCLGIDPGIGRVGFGYVNEEGSALSGLTFGCIDTDPDLSVQDRLNMIYDEVKNHINTIR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  A+E++F  ++      + QAR + +L  A  R+P+ E  P+ +K AV G G   K 
Sbjct: 61  PDVLAMERLFFGQNLTTAENVWQARGVILLLAAQERLPIVEPTPSQVKMAVCGYGKASKS 120

Query: 125 QIHMMLKMLM-PESFFKG 141
           Q+  M+K ++  ES  K 
Sbjct: 121 QVQEMVKCILSLESVPKP 138


>gi|46199033|ref|YP_004700.1| crossover junction endodeoxyribonuclease ruvC [Thermus thermophilus
           HB27]
 gi|55981059|ref|YP_144356.1| Holliday junction resolvase RuvC [Thermus thermophilus HB8]
 gi|81567696|sp|Q72JP3|RUVC_THET2 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|81600435|sp|Q5SJC4|RUVC_THET8 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|46196657|gb|AAS81073.1| crossover junction endodeoxyribonuclease ruvC [Thermus thermophilus
           HB27]
 gi|55772472|dbj|BAD70913.1| Holliday junction resolvase RuvC [Thermus thermophilus HB8]
          Length = 166

 Score =  172 bits (437), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 47/164 (28%), Positives = 86/164 (52%), Gaps = 4/164 (2%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGD---NLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           + + GIDPG+   G G+V V G        +    + +  ++    R+ +++  + +V+ 
Sbjct: 1   MVVAGIDPGITHLGLGVVAVEGKGALKARLLHGEVVKTSPQEPAKERVGRIHARVLEVLH 60

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
            +RPE  AVE+ F  +      K+G A    +++   A +PV  Y P  +K+A+ G GH 
Sbjct: 61  RFRPEAVAVEEQFFYRQNELAYKVGWALGAVLVAAFEAGVPVYAYGPMQVKQALAGHGHA 120

Query: 122 DKKQIHMMLK-MLMPESFFKGKDAADALAIAVCHAYHANSGYYK 164
            K+++ +M++ +L  +   +    ADALAIA+ HA++A  G  K
Sbjct: 121 AKEEVALMVRGILGLKEAPRPSHLADALAIALTHAFYARMGTAK 164


>gi|291301299|ref|YP_003512577.1| crossover junction endodeoxyribonuclease RuvC [Stackebrandtia
           nassauensis DSM 44728]
 gi|290570519|gb|ADD43484.1| crossover junction endodeoxyribonuclease RuvC [Stackebrandtia
           nassauensis DSM 44728]
          Length = 176

 Score =  172 bits (437), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 58/167 (34%), Positives = 95/167 (56%), Gaps = 2/167 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G GIV+ A G     V    + +    +L  RL +L   L  +++ +
Sbjct: 1   MRVLGVDPGLTRCGVGIVEGAPGRPCRLVGVHVVRTDPEAALPDRLLRLDTALAQLVERY 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +P+  AVE+VF   +  + +   QA A+A+L+ A A + V+ Y P+  K A+ G G  DK
Sbjct: 61  QPDAVAVERVFSQHNVASVIGTAQASAVAVLAGARAGVTVATYTPSEAKAAITGSGVADK 120

Query: 124 KQIHMMLKMLM-PESFFKGKDAADALAIAVCHAYHANSGYYKIASQD 169
           KQ+  M+  L+  ++  K  DAADALA+A+CH +   +     A++D
Sbjct: 121 KQMTTMVTKLLRLDAPPKPADAADALALAICHVWRGGTQARFTAARD 167


>gi|163745817|ref|ZP_02153176.1| Holliday junction resolvase [Oceanibulbus indolifex HEL-45]
 gi|161380562|gb|EDQ04972.1| Holliday junction resolvase [Oceanibulbus indolifex HEL-45]
          Length = 168

 Score =  172 bits (437), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 87/162 (53%), Positives = 108/162 (66%), Gaps = 1/162 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           IR+IGIDPGLR  GWG++DV+G  +  V++G I     + LA RL  L+  LT V+  +R
Sbjct: 2   IRVIGIDPGLRNLGWGVIDVSGSRIAHVANG-ICHSEGEDLAARLLSLHGQLTRVLATYR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P  AAVEQ FVNKD   TLKLGQAR IA+L PA   + V EYAPN +KK V+GVGH DK 
Sbjct: 61  PGAAAVEQTFVNKDGAGTLKLGQARGIAMLVPAQFGLTVGEYAPNKVKKTVVGVGHADKG 120

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
           Q+  M++M MP     G DAADALAIA+CHA+H  +     A
Sbjct: 121 QVAHMVRMQMPGIEIAGPDAADALAIAICHAHHGGASTLAQA 162


>gi|220912787|ref|YP_002488096.1| Holliday junction resolvase [Arthrobacter chlorophenolicus A6]
 gi|254767457|sp|B8H9D8|RUVC_ARTCA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|219859665|gb|ACL40007.1| crossover junction endodeoxyribonuclease RuvC [Arthrobacter
           chlorophenolicus A6]
          Length = 192

 Score =  172 bits (437), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 53/160 (33%), Positives = 90/160 (56%), Gaps = 2/160 (1%)

Query: 4   SIRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
           ++R++G+DPGL R G G+VDV        V+ G + +   +SL  RL  +   + + +  
Sbjct: 2   TLRVLGVDPGLTRCGIGVVDVERNRRATMVAVGVVGTSPDESLDQRLLVIATAIDEWLDR 61

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
           + P+  AVE+VF   +    + + QA  + I + A   IPV+ + P+ +K AV G G  +
Sbjct: 62  YEPQVLAVERVFSQLNVSTVMGVAQASGVVIAAAARRGIPVALHTPSEVKAAVTGSGSSN 121

Query: 123 KKQIHMML-KMLMPESFFKGKDAADALAIAVCHAYHANSG 161
           K  +  ++ K+L  ++  +  DAADALA+A+ HA+ A SG
Sbjct: 122 KDAVTKLVTKILRLDAPPRPADAADALALAITHAWRAGSG 161


>gi|295396080|ref|ZP_06806263.1| crossover junction endoribonuclease subunit C [Brevibacterium
           mcbrellneri ATCC 49030]
 gi|294971021|gb|EFG46913.1| crossover junction endoribonuclease subunit C [Brevibacterium
           mcbrellneri ATCC 49030]
          Length = 198

 Score =  172 bits (437), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 52/159 (32%), Positives = 84/159 (52%), Gaps = 2/159 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +RI+G+DPGL R G G++D         V+   I +  + S   RL ++ +     + N+
Sbjct: 1   MRILGVDPGLTRLGLGVIDAGRARQARMVAVDVIRTPSQDSSDVRLGRIADAFDTWLDNY 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RP+  ++E++F   D    +   QA  + +   A   IPV+ + P+ +K AV G G  DK
Sbjct: 61  RPDVVSIERIFARNDVSTIMGTAQASGLTMGLAARRGIPVAMHTPSEVKAAVTGNGRADK 120

Query: 124 KQIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHANSG 161
           KQ+  M+  ++   S  K  DAADALA+A+CH +   S 
Sbjct: 121 KQVTHMVTRILKLDSPPKPADAADALALAICHLWRGASS 159


>gi|308235708|ref|ZP_07666445.1| Holliday junction resolvase [Gardnerella vaginalis ATCC 14018]
 gi|311114742|ref|YP_003985963.1| crossover junction endoribonuclease subunit C [Gardnerella
           vaginalis ATCC 14019]
 gi|310946236|gb|ADP38940.1| crossover junction endoribonuclease subunit C [Gardnerella
           vaginalis ATCC 14019]
          Length = 193

 Score =  172 bits (437), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 42/139 (30%), Positives = 72/139 (51%), Gaps = 1/139 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           + I+G+DPGL R G G+++      L F+    + S  + S   RL ++Y GL + I+ +
Sbjct: 1   MMILGVDPGLTRCGVGVIEAGVSRRLSFIHVDVLRSDPKTSQDLRLLEIYNGLVEKIERF 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P+  ++E+VF  ++    L   Q   +A+L+ A   IPV+ + P  +K AV G G  DK
Sbjct: 61  SPDTISIERVFAQENRNTVLGTAQVAGVAMLAAAQRSIPVALHTPTEVKLAVAGNGKADK 120

Query: 124 KQIHMMLKMLMPESFFKGK 142
            Q+  M+  L+  +     
Sbjct: 121 TQVERMVARLLNLNVLPTP 139


>gi|83943910|ref|ZP_00956367.1| Holliday junction resolvase [Sulfitobacter sp. EE-36]
 gi|83845157|gb|EAP83037.1| Holliday junction resolvase [Sulfitobacter sp. EE-36]
          Length = 168

 Score =  172 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 88/162 (54%), Positives = 110/162 (67%), Gaps = 1/162 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           IR+IGIDPGLR  GWG++DVAG  +  V++G I       LA RL  L+  LT ++   R
Sbjct: 2   IRVIGIDPGLRNMGWGVIDVAGSRITHVANG-ICQSEGADLATRLLSLHAQLTRIMVTCR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ AAVEQ FVNKD   TLKLGQAR IA+L PA A + V EYAPNT+KK V+GVGH DK 
Sbjct: 61  PDAAAVEQTFVNKDGAGTLKLGQARGIAMLVPAQAGLAVGEYAPNTVKKTVVGVGHADKG 120

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
           Q+  M++M +P +   G DAADALAIA+CHA+H  +     A
Sbjct: 121 QVLHMVRMQLPGAEIAGPDAADALAIAICHAHHGGASTLAQA 162


>gi|257457989|ref|ZP_05623148.1| crossover junction endodeoxyribonuclease RuvC [Treponema vincentii
           ATCC 35580]
 gi|257444702|gb|EEV19786.1| crossover junction endodeoxyribonuclease RuvC [Treponema vincentii
           ATCC 35580]
          Length = 164

 Score =  172 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 47/137 (34%), Positives = 81/137 (59%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPGL  TG+GI+ V G  +  +  G I +   Q    RL  +++ LT++I+ + P 
Sbjct: 12  IMGIDPGLASTGYGIIAVTGSRMRCIDYGVIQTEAGQIQGNRLLIVFDRLTELIRAYHPI 71

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
            A +E ++  K+  + L + +AR + +L+ A A +PV +YAPN IKKAV G+   +K+Q+
Sbjct: 72  AAGIETLYFAKNVTSALSVSEARGVTLLALAQAGVPVFQYAPNAIKKAVTGIAQAEKQQV 131

Query: 127 HMMLKMLMPESFFKGKD 143
            + +++L+        D
Sbjct: 132 QLTVQLLLGLKTIPKPD 148


>gi|213966142|ref|ZP_03394329.1| crossover junction endodeoxyribonuclease RuvC [Corynebacterium
           amycolatum SK46]
 gi|213951240|gb|EEB62635.1| crossover junction endodeoxyribonuclease RuvC [Corynebacterium
           amycolatum SK46]
          Length = 186

 Score =  172 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 38/134 (28%), Positives = 65/134 (48%), Gaps = 1/134 (0%)

Query: 8   IGIDPGLRRTGWGIVD-VAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           +GIDPGL R G  I +   G  +  ++ G   +    SL  RL +L   +   +  + P+
Sbjct: 2   MGIDPGLTRCGLSIAEGAQGRKVIPIAVGVARTPTTASLEDRLLRLSNAVEQWMDEYEPD 61

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+E+VF   +    ++   A  + +L+ A   + V  Y P+ +KKA+ G G  DKKQ+
Sbjct: 62  VVAMERVFERGNVSTVMQTAHAVGVLVLAAARRGLEVHMYTPSEVKKALTGNGRADKKQM 121

Query: 127 HMMLKMLMPESFFK 140
            MM+  ++      
Sbjct: 122 TMMVTRILGLETPP 135


>gi|259507386|ref|ZP_05750286.1| Holliday junction nuclease [Corynebacterium efficiens YS-314]
 gi|44888501|sp|Q8FPK3|RUVC_COREF RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|259165011|gb|EEW49565.1| Holliday junction nuclease [Corynebacterium efficiens YS-314]
          Length = 223

 Score =  171 bits (435), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 41/137 (29%), Positives = 73/137 (53%), Gaps = 1/137 (0%)

Query: 3   KSIRIIGIDPGLRRTGWGIVDVAGDNLCF-VSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           + +R++GIDPGL R G  +V        + VS G + +     LA RL +L + + + + 
Sbjct: 4   EGLRVMGIDPGLTRCGLSVVQAGRGRTVYPVSVGVVRTPSDAELADRLLRLSQAVGEWMD 63

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
           ++ P+  A+E+VF   +    +    A  + IL+ A   +PV  Y P+ +KKA+ G G  
Sbjct: 64  DYTPDVIAIERVFERGNVSTVMNTAHAVGVLILAAAERGLPVHMYTPSEVKKAISGNGRA 123

Query: 122 DKKQIHMMLKMLMPESF 138
           DKKQ+ +M+  ++  + 
Sbjct: 124 DKKQMTVMITRILGLAE 140


>gi|227503510|ref|ZP_03933559.1| Holliday junction resolvase [Corynebacterium accolens ATCC 49725]
 gi|227076013|gb|EEI13976.1| Holliday junction resolvase [Corynebacterium accolens ATCC 49725]
          Length = 185

 Score =  171 bits (435), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 40/137 (29%), Positives = 69/137 (50%), Gaps = 1/137 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++GIDPGL R G  +V    G  +  VS G + +   + L  RL +L     + + ++
Sbjct: 1   MRVMGIDPGLTRCGLSVVQAGRGRAILPVSVGVVRTPSDKDLTERLLRLSVAAKEWMDDY 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P+  A+E+VF        ++      + +L+ A   IPV  Y P+ +KKA+ G G  DK
Sbjct: 61  SPDVVAIERVFERGQVSTVMQTAHVVGVLVLAAAERDIPVYMYTPSEVKKAISGNGRADK 120

Query: 124 KQIHMMLKMLMPESFFK 140
           KQ+  M+  ++  +   
Sbjct: 121 KQMTTMITRILGLTEPP 137


>gi|322378947|ref|ZP_08053361.1| Crossover junction endodeoxyribonuclease RuvC [Helicobacter suis
           HS1]
 gi|322379801|ref|ZP_08054098.1| Holliday junction resolvase [Helicobacter suis HS5]
 gi|321147769|gb|EFX42372.1| Holliday junction resolvase [Helicobacter suis HS5]
 gi|321148623|gb|EFX43109.1| Crossover junction endodeoxyribonuclease RuvC [Helicobacter suis
           HS1]
          Length = 165

 Score =  171 bits (435), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 51/157 (32%), Positives = 79/157 (50%), Gaps = 6/157 (3%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG  + G+GI++  G  L  V +G I    +  L  ++ ++  G   ++K +   
Sbjct: 12  ILGIDPGSSKCGYGIIE--GGKL--VGAGFIHIKAK-HLQAQILEVVAGFEQILKTYAIT 66

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E +F   +    LKL Q R    L         SEY P  +KKA+ G G   K+Q+
Sbjct: 67  EVAMEDIFYAYNPKTVLKLAQFRGALGLKILQEMGHFSEYTPLQVKKAITGHGKASKEQV 126

Query: 127 HMMLKMLMP-ESFFKGKDAADALAIAVCHAYHANSGY 162
             M+K ++  +S  K  D  DA+AIA+ HA    S +
Sbjct: 127 AFMVKKILGIKSAIKPLDITDAIAIALTHAQQNKSPF 163


>gi|323142287|ref|ZP_08077119.1| crossover junction endodeoxyribonuclease RuvC
           [Phascolarctobacterium sp. YIT 12067]
 gi|322413171|gb|EFY04058.1| crossover junction endodeoxyribonuclease RuvC
           [Phascolarctobacterium sp. YIT 12067]
          Length = 183

 Score =  171 bits (435), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 42/138 (30%), Positives = 82/138 (59%), Gaps = 1/138 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + ++GIDPG    G+G+VD+ G+ L  V  G++++        RL ++Y+ ++D+I +++
Sbjct: 20  MLVLGIDPGTAICGYGLVDMTGNRLRPVFYGSVLTYKDMLPELRLKKIYDDISDIIDHFK 79

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  ++E++F N++    + +GQAR + +L+ A   +PV E+ P  IK +V+G G   K+
Sbjct: 80  PDLLSIEKLFFNRNVTTAIPVGQARGVVLLAAANKGLPVMEFTPMQIKLSVVGTGSATKE 139

Query: 125 QIHMMLKMLMP-ESFFKG 141
           Q+  M+  L+      K 
Sbjct: 140 QVIYMVMHLLNIREKIKP 157


>gi|38233962|ref|NP_939729.1| Holliday junction resolvase [Corynebacterium diphtheriae NCTC
           13129]
 gi|81564835|sp|Q6NGX3|RUVC_CORDI RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|38200224|emb|CAE49908.1| crossover junction endodeoxyribonuclease [Corynebacterium
           diphtheriae]
          Length = 163

 Score =  171 bits (435), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 38/130 (29%), Positives = 67/130 (51%), Gaps = 1/130 (0%)

Query: 8   IGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           +GIDPGL R G  +V    G ++  V+ G + +     L+ RL +L E +   I  ++P+
Sbjct: 1   MGIDPGLTRCGLSVVQAGKGRSVIPVAVGVVRTPPHAELSQRLLELSEAVNSWIDEYQPD 60

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+E++F   +    +       + +L+ A   +PV  Y P+ +KKA+ G G  DKKQ+
Sbjct: 61  VVAIERIFERGNVSTVMNTAHGVGVLVLAAAQRGLPVHMYTPSEVKKAISGNGRADKKQM 120

Query: 127 HMMLKMLMPE 136
             M+  ++  
Sbjct: 121 TAMITRILGL 130


>gi|257461142|ref|ZP_05626240.1| crossover junction endodeoxyribonuclease RuvC [Campylobacter
           gracilis RM3268]
 gi|257441516|gb|EEV16661.1| crossover junction endodeoxyribonuclease RuvC [Campylobacter
           gracilis RM3268]
          Length = 159

 Score =  171 bits (434), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 43/153 (28%), Positives = 77/153 (50%), Gaps = 2/153 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++I+GIDPG R  G+ I+    + +  + +G +     +++ F++ Q+ E +  +    +
Sbjct: 1   MKILGIDPGTRNLGYAILKKDVNKITLIEAGLVKMKA-ENVQFQMTQMSEAIDQIFSAHK 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
            +E A+E +F   +  + LKL Q R    L         +EY P  +KK+V G     K+
Sbjct: 60  IDEVAIESMFYAYNPQSVLKLAQFRGALALKILQIFGNFAEYTPLQVKKSVTGKAKAAKE 119

Query: 125 QIHMMLKMLMP-ESFFKGKDAADALAIAVCHAY 156
           Q+  M+K ++      K  D  DA+AIA+ HA 
Sbjct: 120 QVAFMVKRILGINKEIKPLDITDAIAIALTHAN 152


>gi|29654858|ref|NP_820550.1| Holliday junction resolvase [Coxiella burnetii RSA 493]
 gi|161830597|ref|YP_001597404.1| Holliday junction resolvase [Coxiella burnetii RSA 331]
 gi|212212081|ref|YP_002303017.1| Holliday junction resolvase [Coxiella burnetii CbuG_Q212]
 gi|44888459|sp|Q83BE3|RUVC_COXBU RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|189046063|sp|A9N9A1|RUVC_COXBR RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|226698751|sp|B6IYU4|RUVC_COXB2 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|29542127|gb|AAO91064.1| crossover junction endodeoxyribonuclease [Coxiella burnetii RSA
           493]
 gi|161762464|gb|ABX78106.1| crossover junction endodeoxyribonuclease RuvC [Coxiella burnetii
           RSA 331]
 gi|212010491|gb|ACJ17872.1| crossover junction endodeoxyribonuclease [Coxiella burnetii
           CbuG_Q212]
          Length = 172

 Score =  171 bits (434), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 57/139 (41%), Positives = 79/139 (56%), Gaps = 2/139 (1%)

Query: 1   MRKSIRII-GIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDV 59
           M    RII GIDPG R TG+GI+   G     ++ G I +    SL FRL Q+   L D+
Sbjct: 1   MDNPRRIIIGIDPGSRITGYGIIWSQGSKQGCIAFGQIKTD-NDSLNFRLHQIERELRDL 59

Query: 60  IKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVG 119
           I   RP EAA+EQVF   +  + LKLGQAR  A+++ A   + V+EY+   IK+AV+G G
Sbjct: 60  ILIHRPHEAAIEQVFTFHNHQSALKLGQARGAALVATAACALSVAEYSARQIKQAVVGYG 119

Query: 120 HGDKKQIHMMLKMLMPESF 138
              K Q+  M+ +L+    
Sbjct: 120 AATKAQVQHMVHLLLQLEK 138


>gi|312196176|ref|YP_004016237.1| crossover junction endodeoxyribonuclease RuvC [Frankia sp. EuI1c]
 gi|311227512|gb|ADP80367.1| crossover junction endodeoxyribonuclease RuvC [Frankia sp. EuI1c]
          Length = 174

 Score =  171 bits (434), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 44/138 (31%), Positives = 68/138 (49%), Gaps = 2/138 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDV--AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
           +R++G+DPGL R G G+VD   AG     V  G   +   + +A RL  +   +   +  
Sbjct: 1   MRVMGVDPGLTRCGLGVVDGGGAGRRAALVEVGVARTPATEDVAIRLRDISVQIDLWLDR 60

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
            RP+  AVE+VF   +    +   Q  A+AI+  A   +PV+ Y P+ +K AV G G  D
Sbjct: 61  HRPDAVAVERVFSQANVRTVMGTAQVGAVAIVLAARRGLPVALYTPSEVKAAVTGSGRAD 120

Query: 123 KKQIHMMLKMLMPESFFK 140
           K Q+  M+  L+      
Sbjct: 121 KAQVTFMISKLLDLDTPP 138


>gi|317124984|ref|YP_004099096.1| Holliday junction endonuclease RuvC [Intrasporangium calvum DSM
           43043]
 gi|315589072|gb|ADU48369.1| Holliday junction endonuclease RuvC [Intrasporangium calvum DSM
           43043]
          Length = 192

 Score =  171 bits (434), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 42/134 (31%), Positives = 66/134 (49%), Gaps = 1/134 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++ +DPGL R G G++D   G  L  V  G I +    +   RL  L E L +  +  
Sbjct: 1   MRVLAVDPGLTRCGVGVIDGLPGRRLSLVEVGVIRTPSTDATPKRLVALEEELREWFERT 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RPE  A+E+VF + +    L   Q   I ++      +PV+ + P  +K AV G G  DK
Sbjct: 61  RPEAVAIERVFADTNLSTVLGTAQCTGIVMMLAERRGLPVTLHTPTEVKAAVSGSGRADK 120

Query: 124 KQIHMMLKMLMPES 137
           +Q+  M+  L+   
Sbjct: 121 RQVTTMVTRLLGLD 134


>gi|119961867|ref|YP_948038.1| Holliday junction resolvase [Arthrobacter aurescens TC1]
 gi|166231577|sp|A1R726|RUVC_ARTAT RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|119948726|gb|ABM07637.1| crossover junction endodeoxyribonuclease RuvC [Arthrobacter
           aurescens TC1]
          Length = 189

 Score =  171 bits (434), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 52/168 (30%), Positives = 90/168 (53%), Gaps = 2/168 (1%)

Query: 4   SIRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
           ++R++G+DPGL R G G+VD+        V+ G + +    +L  RL  + + + + +  
Sbjct: 2   TLRVLGVDPGLTRCGIGVVDIEKNRRATMVAVGVVGTSAELTLDKRLLVIAQAIDEWLDR 61

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
             P+  AVE+VF   +    + + QA  + I + A   IPV+ + P+ +K AV G G  +
Sbjct: 62  HEPDVVAVERVFSQMNVSTVMGVAQASGVVIAAAARRGIPVALHTPSEVKAAVTGSGTAN 121

Query: 123 KKQIHMML-KMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQD 169
           K  +  ++ K+L  ++  K  DAADALA+A+ HA+ A SG    +   
Sbjct: 122 KDAVTKLVTKILRLDAPPKPADAADALALALTHAWRAGSGMGAASGNS 169


>gi|25028331|ref|NP_738385.1| Holliday junction resolvase [Corynebacterium efficiens YS-314]
 gi|23493616|dbj|BAC18585.1| crossover junction endodeoxyribonuclease RuvC [Corynebacterium
           efficiens YS-314]
          Length = 230

 Score =  171 bits (434), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 41/137 (29%), Positives = 73/137 (53%), Gaps = 1/137 (0%)

Query: 3   KSIRIIGIDPGLRRTGWGIVDVAGDNLCF-VSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           + +R++GIDPGL R G  +V        + VS G + +     LA RL +L + + + + 
Sbjct: 11  EGLRVMGIDPGLTRCGLSVVQAGRGRTVYPVSVGVVRTPSDAELADRLLRLSQAVGEWMD 70

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
           ++ P+  A+E+VF   +    +    A  + IL+ A   +PV  Y P+ +KKA+ G G  
Sbjct: 71  DYTPDVIAIERVFERGNVSTVMNTAHAVGVLILAAAERGLPVHMYTPSEVKKAISGNGRA 130

Query: 122 DKKQIHMMLKMLMPESF 138
           DKKQ+ +M+  ++  + 
Sbjct: 131 DKKQMTVMITRILGLAE 147


>gi|33865249|ref|NP_896808.1| Holliday junction resolvase [Synechococcus sp. WH 8102]
 gi|44888399|sp|Q7U8A6|RUVC_SYNPX RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|33632418|emb|CAE07230.1| Holliday junction resolvase RuvC [Synechococcus sp. WH 8102]
          Length = 154

 Score =  171 bits (434), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 44/138 (31%), Positives = 77/138 (55%), Gaps = 1/138 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGL R G+G++D +G +   +  G I +   +S   R+ ++   L  +I+ WR
Sbjct: 1   MRILGIDPGLARVGYGVIDTSGGHQRMLDCGIIRTDPGRSDGERMVEIASDLRQLIRAWR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           PE AAVE+ F  +    T+ + QAR + +++ A  ++PV E+ P  IK A+ G GH +K 
Sbjct: 61  PELAAVEKFFFYRS-SNTINVVQARGVVMMTLARFKVPVVEFPPMQIKLALAGFGHAEKD 119

Query: 125 QIHMMLKMLMPESFFKGK 142
           ++   +   +  +     
Sbjct: 120 EVLEAVMRELDLTEPPRP 137


>gi|149184937|ref|ZP_01863254.1| Holliday junction resolvase [Erythrobacter sp. SD-21]
 gi|148831048|gb|EDL49482.1| Holliday junction resolvase [Erythrobacter sp. SD-21]
          Length = 160

 Score =  170 bits (433), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 53/135 (39%), Positives = 80/135 (59%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + I+G+DP L  TGWG++   G  +  +++G + +  +  +A RL  L   L  VI   R
Sbjct: 1   MIILGLDPSLSCTGWGVIRAEGSRIAHIANGQVPTDAKAPMARRLSHLQTALEAVIAEHR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ AA E+VFVNK+  +TLKL QAR   + +   A + V+E+A   +KKAV+G G  DK 
Sbjct: 61  PDRAAAEEVFVNKNPQSTLKLAQARGAVLAACGAAGLDVNEHAARLVKKAVVGTGGADKT 120

Query: 125 QIHMMLKMLMPESFF 139
           Q+  MLK+L+P    
Sbjct: 121 QVQAMLKVLLPGVKI 135


>gi|160872220|ref|ZP_02062352.1| crossover junction endodeoxyribonuclease RuvC [Rickettsiella
           grylli]
 gi|159121019|gb|EDP46357.1| crossover junction endodeoxyribonuclease RuvC [Rickettsiella
           grylli]
          Length = 184

 Score =  170 bits (433), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 50/140 (35%), Positives = 91/140 (65%), Gaps = 1/140 (0%)

Query: 2   RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
            K+  I+GIDPG   TG+G++ + G  L ++ SG I   V  + + RL +++ GL  +++
Sbjct: 12  SKNRIILGIDPGSCITGYGLIQMEGSELNYLDSGCIK-VVNVAFSERLEKIFTGLQKLLQ 70

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
           ++ P EAA+EQVF++ +  A LKLGQAR +A+++ ALA++ + EY+   +K++V+G G  
Sbjct: 71  DYTPHEAAIEQVFMHINPHAALKLGQARGVALVAAALAKLRICEYSARQVKQSVVGYGAA 130

Query: 122 DKKQIHMMLKMLMPESFFKG 141
            K+Q+  M+++L+  +    
Sbjct: 131 SKQQVQHMVRVLLHLNCTPS 150


>gi|237785622|ref|YP_002906327.1| crossover junction endodeoxyribonuclease [Corynebacterium
           kroppenstedtii DSM 44385]
 gi|237758534|gb|ACR17784.1| crossover junction endodeoxyribonuclease [Corynebacterium
           kroppenstedtii DSM 44385]
          Length = 191

 Score =  170 bits (433), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 50/158 (31%), Positives = 81/158 (51%), Gaps = 2/158 (1%)

Query: 3   KSIRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           +  R++G+DPGL R G   V    G ++  V+ G I +     L+ RL  +   + + + 
Sbjct: 15  EGTRVMGVDPGLTRCGISTVQAGRGRSVLPVAVGVIRTDASDDLSTRLLDISVKIDEWMD 74

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
            + P+  A+E+VF        +    A  + I+  A   IPV  Y P+ +KKAV G G  
Sbjct: 75  EYHPDMLAIERVFERGVVSTVMHTAHAVGVIIVCAARRDIPVYMYTPSEVKKAVSGNGRA 134

Query: 122 DKKQIHMMLKMLMPESFFK-GKDAADALAIAVCHAYHA 158
           +KKQ+  M+  ++  +      DAADALA+A+CH + A
Sbjct: 135 NKKQVTAMVTRVLGLAEPPRPADAADALALAICHCWRA 172


>gi|296129640|ref|YP_003636890.1| crossover junction endodeoxyribonuclease RuvC [Cellulomonas
           flavigena DSM 20109]
 gi|296021455|gb|ADG74691.1| crossover junction endodeoxyribonuclease RuvC [Cellulomonas
           flavigena DSM 20109]
          Length = 188

 Score =  170 bits (433), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 40/139 (28%), Positives = 67/139 (48%), Gaps = 1/139 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G G+VD   G     V      S     +  RL  +   L + ++  
Sbjct: 1   MRVLGVDPGLTRCGLGVVDGLPGRRARLVHVSVARSEPGLDVDQRLLLIERALEECLEEH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P+  AVE+VF   +    +   Q   +A+++ A  R+PV+ + P+ +K AV G G  DK
Sbjct: 61  APDAVAVERVFAQHNVSTVMGTAQVAGLAMVAAARRRVPVALHTPSEVKAAVTGSGRADK 120

Query: 124 KQIHMMLKMLMPESFFKGK 142
            Q+  M+  L+  +     
Sbjct: 121 AQVQTMVARLLGLADLPRP 139


>gi|187611522|sp|A3PYW3|RUVC_MYCSJ RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|187611523|sp|A1UFA2|RUVC_MYCSK RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|187611524|sp|Q1B9R1|RUVC_MYCSS RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
          Length = 185

 Score =  170 bits (433), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 47/156 (30%), Positives = 81/156 (51%), Gaps = 2/156 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G  +++   G  +  +    + +   + L  RL  + + +   +   
Sbjct: 1   MRVMGVDPGLTRCGLSVIESGQGRKVIALDVDVVRTPADEQLHRRLLIISDTVEHWMDTH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RP+  A+E+VF N +A   +   QA  +  L+ A   I V  + P+ +K AV G G  DK
Sbjct: 61  RPDVIAIERVFANHNANTAMGTAQAGGVIALAAAKRDIDVHFHTPSEVKAAVTGNGRADK 120

Query: 124 KQIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHA 158
            Q+  M+  ++   +     DAADALA+A+CH + A
Sbjct: 121 AQVTEMVTRILALQAKPTPADAADALALAICHCWRA 156


>gi|257068560|ref|YP_003154815.1| Holliday junction endonuclease RuvC [Brachybacterium faecium DSM
           4810]
 gi|256559378|gb|ACU85225.1| Holliday junction endonuclease RuvC [Brachybacterium faecium DSM
           4810]
          Length = 197

 Score =  170 bits (433), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 47/134 (35%), Positives = 69/134 (51%), Gaps = 1/134 (0%)

Query: 4   SIRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
           ++R++G+DPGL R G G+VD   G     V +G + S     L  RL  +  GL   ++ 
Sbjct: 3   TMRVLGVDPGLTRCGIGVVDALGGRRARLVHAGVLRSESDAPLDQRLLTIARGLRAALEE 62

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
           + P+  AVE+VF   +    +   Q   IA+L  A   IP + + P+ +K AV G G  D
Sbjct: 63  FGPDAVAVERVFSQNNISTVMGTAQVSGIALLEAAERGIPAAMHTPSEVKAAVTGSGRAD 122

Query: 123 KKQIHMMLKMLMPE 136
           KKQI  ML  L+  
Sbjct: 123 KKQIQTMLVKLLGL 136


>gi|221632807|ref|YP_002522029.1| crossover junction endodeoxyribonuclease RuvC [Thermomicrobium
           roseum DSM 5159]
 gi|254767486|sp|B9KZ87|RUVC_THERP RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|221156400|gb|ACM05527.1| crossover junction endodeoxyribonuclease RuvC [Thermomicrobium
           roseum DSM 5159]
          Length = 163

 Score =  170 bits (433), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 42/125 (33%), Positives = 74/125 (59%), Gaps = 1/125 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++G+DPG+   G+G+V+  G+ L  +S G + +     +  RL  L++ L  ++++W+
Sbjct: 1   MRVLGVDPGMALLGYGVVE-GGEPLRALSFGVVSTPAHLPVERRLVVLHDELAQLLEHWQ 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  A+EQ+F  ++    L +GQAR I +L      IPV EY P  +K+AV G G   K+
Sbjct: 60  PDVVALEQLFFARNVTTALAVGQARGIVLLLCGQRTIPVVEYTPAQVKQAVGGYGRARKR 119

Query: 125 QIHMM 129
           ++  M
Sbjct: 120 EMQEM 124


>gi|118473848|ref|YP_887262.1| Holliday junction resolvase [Mycobacterium smegmatis str. MC2 155]
 gi|166233270|sp|A0QWH4|RUVC_MYCS2 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|118175135|gb|ABK76031.1| crossover junction endodeoxyribonuclease RuvC [Mycobacterium
           smegmatis str. MC2 155]
          Length = 185

 Score =  170 bits (432), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 47/156 (30%), Positives = 81/156 (51%), Gaps = 2/156 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G  +++   G  +  +    + +     L  RL  + +     +   
Sbjct: 1   MRVMGVDPGLTRCGLSMIESGKGRQVIALDVDVVRTPADTPLQKRLLTISDAAEHWMDTH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RP+  A+E+VF N++A   +   QA  +  L+ A   I V  + P+ +K AV G G  DK
Sbjct: 61  RPDVIAIERVFANQNANTAMGTAQAGGVIALAAAKRDIEVHFHTPSEVKAAVTGSGRADK 120

Query: 124 KQIHMMLKMLM-PESFFKGKDAADALAIAVCHAYHA 158
            Q+  M+  ++  ++     DAADALA+A+CH + A
Sbjct: 121 SQVTEMVTRILALQAKPTPADAADALALAICHCWRA 156


>gi|113953230|ref|YP_730174.1| Holliday junction resolvase [Synechococcus sp. CC9311]
 gi|123327890|sp|Q0IBJ8|RUVC_SYNS3 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|113880581|gb|ABI45539.1| Crossover junction endodeoxyribonuclease ruvC (Hollidayjunction
           nuclease ruvC) (Holliday juction resolvase ruvC)
           [Synechococcus sp. CC9311]
          Length = 160

 Score =  170 bits (432), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 42/144 (29%), Positives = 73/144 (50%), Gaps = 7/144 (4%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDN------LCFVSSGTIVSCVRQSLAFRLCQLYEGLTD 58
           +RI+GIDPGL R G+G++DV             +  G I +   +S   R+ ++   L  
Sbjct: 1   MRILGIDPGLARVGYGVIDVEPRKGKQEGSQRMIDCGIIRTDPGRSEGERMVEIARDLRQ 60

Query: 59  VIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGV 118
           +I+  +PE A+VE+ F  +    T+ + QAR + I++ A   +P+ E+ P  IK+A+ G 
Sbjct: 61  IIRIHQPELASVEKFFFYRS-SNTIAVVQARGVLIMTLARFGLPIVEFPPMQIKQALTGH 119

Query: 119 GHGDKKQIHMMLKMLMPESFFKGK 142
           GH DK ++   +   +        
Sbjct: 120 GHADKDEVLEAVMRELNLDTPPRP 143


>gi|119716612|ref|YP_923577.1| Holliday junction endonuclease RuvC [Nocardioides sp. JS614]
 gi|166233275|sp|A1SJA5|RUVC_NOCSJ RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|119537273|gb|ABL81890.1| Holliday junction endonuclease RuvC [Nocardioides sp. JS614]
          Length = 177

 Score =  170 bits (432), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 49/158 (31%), Positives = 80/158 (50%), Gaps = 2/158 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++GIDPGL R G G+VD + G  L  V    + +     +  RL  +  G+   I+  
Sbjct: 1   MRVLGIDPGLTRCGMGVVDGSVGRPLTLVDVNVLRTSADLPVPERLVTIERGVEAWIEEH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P+  A+E+VF   D    +   QA  +A++  A   +P+  + P+ +K AV G G   K
Sbjct: 61  APDAVAIERVFARSDVSTVMGTAQASGVAMVVAARRGLPIGLHTPSEVKAAVSGNGRAGK 120

Query: 124 KQIHMMLKMLMPES-FFKGKDAADALAIAVCHAYHANS 160
            Q+  M+  ++      K  DAADALA+A+ H +   +
Sbjct: 121 AQVGAMVTRILRLDVMPKPADAADALALAITHIWRGGA 158


>gi|258653557|ref|YP_003202713.1| crossover junction endodeoxyribonuclease RuvC [Nakamurella
           multipartita DSM 44233]
 gi|258556782|gb|ACV79724.1| crossover junction endodeoxyribonuclease RuvC [Nakamurella
           multipartita DSM 44233]
          Length = 181

 Score =  170 bits (432), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 41/135 (30%), Positives = 68/135 (50%), Gaps = 1/135 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G G+VD   G     V    + +     LA RL Q+   +  ++   
Sbjct: 1   MRVLGVDPGLTRCGIGVVDGGPGLPPRAVEVMVVRTPADAPLAERLLQIAVRVEAMMDRH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +P+  A+E+VF   +    +   QA  +  L+ A   IPV+ + P+ +K AV G G+ DK
Sbjct: 61  QPDTVAIERVFSQHNVRTVMGTAQASGVVALAAARRGIPVAWHTPSEVKAAVSGHGNADK 120

Query: 124 KQIHMMLKMLMPESF 138
            Q+  M+  L+    
Sbjct: 121 AQVTAMITRLLKLPE 135


>gi|294101863|ref|YP_003553721.1| crossover junction endodeoxyribonuclease RuvC [Aminobacterium
           colombiense DSM 12261]
 gi|293616843|gb|ADE56997.1| crossover junction endodeoxyribonuclease RuvC [Aminobacterium
           colombiense DSM 12261]
          Length = 174

 Score =  170 bits (432), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 42/133 (31%), Positives = 69/133 (51%)

Query: 8   IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEE 67
           IGIDPGL R G+ +V   G +      G I +  +  ++ RL  +Y  L + I+   P+ 
Sbjct: 10  IGIDPGLGRLGFALVRKEGHSFFAEEFGCIETPAKTDISLRLEMIYNKLGERIQCCSPDF 69

Query: 68  AAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIH 127
            +VE++F  ++      + QAR I +L  +  ++PV E  P+ IK AV G G  DKKQ+ 
Sbjct: 70  MSVEKLFFGRNTTTAEYVWQARGIVLLLASQYKLPVYEPKPSQIKVAVCGFGSADKKQVQ 129

Query: 128 MMLKMLMPESFFK 140
            M++ ++      
Sbjct: 130 RMVQRMLNLKEIP 142


>gi|78184289|ref|YP_376724.1| Holliday junction resolvase [Synechococcus sp. CC9902]
 gi|116071065|ref|ZP_01468334.1| Holliday junction resolvase RuvC [Synechococcus sp. BL107]
 gi|123770968|sp|Q3AYZ7|RUVC_SYNS9 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|78168583|gb|ABB25680.1| Holliday junction endonuclease RuvC [Synechococcus sp. CC9902]
 gi|116066470|gb|EAU72227.1| Holliday junction resolvase RuvC [Synechococcus sp. BL107]
          Length = 154

 Score =  170 bits (432), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 44/138 (31%), Positives = 74/138 (53%), Gaps = 1/138 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGL R G+G++D +G     +  G I +    S   R+  +   L  +I+ WR
Sbjct: 1   MRILGIDPGLARVGYGVIDTSGGQQRMLDCGIIRTEPGYSEGDRMVVIASDLRQLIRAWR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           PE AAVE+ F  +    T+ + QAR + +++ A  ++PV E+ P  IK A+ G GH +K 
Sbjct: 61  PELAAVEKFFFYRS-STTISVVQARGVVMMTLARFKVPVVEFPPMQIKLALAGFGHAEKD 119

Query: 125 QIHMMLKMLMPESFFKGK 142
           ++   +   +  +     
Sbjct: 120 EVLEAVMRELNLTDPPRP 137


>gi|325963420|ref|YP_004241326.1| Holliday junction endonuclease RuvC [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323469507|gb|ADX73192.1| Holliday junction endonuclease RuvC [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 192

 Score =  170 bits (432), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 53/162 (32%), Positives = 90/162 (55%), Gaps = 2/162 (1%)

Query: 4   SIRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
           ++R++G+DPGL R G G+VDV        V+ G + +   +SL  RL  +   + + +  
Sbjct: 2   TLRVLGVDPGLTRCGIGVVDVERNRRATMVAVGVVGTSPEESLDQRLLLIACSIDEWLDR 61

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
           + P+  AVE+VF   +    + + QA  + I + A   IPV+ + P+ +K AV G G  +
Sbjct: 62  YEPQVLAVERVFSQLNVSTVMGVAQASGVVIAAAARRGIPVALHTPSEVKAAVTGSGSSN 121

Query: 123 KKQIHMML-KMLMPESFFKGKDAADALAIAVCHAYHANSGYY 163
           K  +  ++ K+L  ++  +  DAADALA+A+ HA+ A SG  
Sbjct: 122 KDAVTKLVTKILRLDAPPRPADAADALALAITHAWRAGSGAA 163


>gi|114799962|ref|YP_758879.1| Holliday junction resolvase [Hyphomonas neptunium ATCC 15444]
 gi|122942819|sp|Q0C5W4|RUVC_HYPNA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|114740136|gb|ABI78261.1| crossover junction endodeoxyribonuclease RuvC [Hyphomonas neptunium
           ATCC 15444]
          Length = 167

 Score =  170 bits (432), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 55/138 (39%), Positives = 86/138 (62%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M   IRI+GIDPGLR TGWG+++ +G  L  ++ G I      S+A RL  ++E + ++ 
Sbjct: 1   MSTPIRILGIDPGLRHTGWGVIEQSGARLVHIAHGVIDPPTDLSMAERLGHIFEAVGELA 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
           ++  P  A VE+  VN +  + LKLGQAR  A+ + A+A + V+E+AP  IK +V+G G 
Sbjct: 61  RHHAPHAAGVEETLVNANPRSALKLGQARGAAMAALAMAGVSVAEFAPRQIKLSVVGTGT 120

Query: 121 GDKKQIHMMLKMLMPESF 138
            DK Q+  M++ L+P + 
Sbjct: 121 ADKDQVKFMVQRLLPRAG 138


>gi|85709535|ref|ZP_01040600.1| Holliday junction resolvasome endonuclease subunit [Erythrobacter
           sp. NAP1]
 gi|85688245|gb|EAQ28249.1| Holliday junction resolvasome endonuclease subunit [Erythrobacter
           sp. NAP1]
          Length = 157

 Score =  170 bits (431), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 52/131 (39%), Positives = 80/131 (61%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + I+G+DP L  TGWG++   G  L  +++G I +  +  +A RL  L  G+ +VI    
Sbjct: 1   MIILGLDPSLTCTGWGLIRAEGSRLSHIANGQIKTNSKAPMAERLAALSCGIAEVIAAHG 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           PE AA E+VFVN++  +TLKL QAR   + +   A + V+E+A   +KKA +G G  DK 
Sbjct: 61  PERAACEEVFVNENPKSTLKLAQARGAVLAACGAAGLSVNEHAARLVKKATVGTGAADKS 120

Query: 125 QIHMMLKMLMP 135
           Q+  M+K+L+P
Sbjct: 121 QVAAMIKVLLP 131


>gi|317508677|ref|ZP_07966332.1| crossover junction endodeoxyribonuclease RuvC [Segniliparus rugosus
           ATCC BAA-974]
 gi|316252998|gb|EFV12413.1| crossover junction endodeoxyribonuclease RuvC [Segniliparus rugosus
           ATCC BAA-974]
          Length = 189

 Score =  170 bits (431), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 40/134 (29%), Positives = 67/134 (50%), Gaps = 1/134 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++GIDPGL R G  +V+  AG  +  +      +  + SL  RL ++ + +   + + 
Sbjct: 1   MRVMGIDPGLTRCGLALVEAGAGRKVTALDVDVCRTSPQDSLQHRLSRIADEVEHWLDSH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RP+  AVEQVF   +    + + Q   +  L  A   IPV  + P+ +K AV G G  DK
Sbjct: 61  RPDVVAVEQVFAQHNVRTVMGVAQVSGVVALLAARRSIPVRTHTPSEVKAAVTGNGRADK 120

Query: 124 KQIHMMLKMLMPES 137
            Q+  M+  ++   
Sbjct: 121 DQVTAMVTRILGLK 134


>gi|116670850|ref|YP_831783.1| Holliday junction resolvase [Arthrobacter sp. FB24]
 gi|166231578|sp|A0JXB3|RUVC_ARTS2 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|116610959|gb|ABK03683.1| Holliday junction endonuclease RuvC [Arthrobacter sp. FB24]
          Length = 192

 Score =  170 bits (431), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 54/162 (33%), Positives = 89/162 (54%), Gaps = 2/162 (1%)

Query: 4   SIRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
           ++R++G+DPGL R G G+VDV        V+ G + +   +SL  RL  +   + D +  
Sbjct: 2   TLRVLGVDPGLTRCGIGVVDVEKNRRATMVAVGVVGTSPDESLDQRLLLIATSIDDWLDR 61

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
           + P   AVE+VF   +    + + QA  + I + A   IPV+ + P+ +K AV G G  +
Sbjct: 62  YEPHVLAVERVFSQLNVSTVMGVAQASGVVIAAAARRGIPVALHTPSEVKAAVTGSGTSN 121

Query: 123 KKQIHMML-KMLMPESFFKGKDAADALAIAVCHAYHANSGYY 163
           K  +  ++ K+L  ++  +  DAADALA+A+ HA+ A SG  
Sbjct: 122 KDAVTKLVTKILRLDAPPRPADAADALALAITHAWRAGSGAA 163


>gi|84687719|ref|ZP_01015592.1| Holliday junction resolvase [Maritimibacter alkaliphilus HTCC2654]
 gi|84664302|gb|EAQ10793.1| Holliday junction resolvase [Rhodobacterales bacterium HTCC2654]
          Length = 165

 Score =  170 bits (431), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 84/154 (54%), Positives = 109/154 (70%), Gaps = 1/154 (0%)

Query: 8   IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEE 67
           +GIDPGLR  GWG++DV+G  +  +++G       + L  RL  L++ LTDV+  + P+ 
Sbjct: 1   MGIDPGLRNLGWGVIDVSGSRISHIANGVCH-GTGEDLGDRLLALFDALTDVVARFAPDT 59

Query: 68  AAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIH 127
           AAVEQ FVNKD   TLKLGQAR IA+L PA A + V EYAPNTIKK V+GVGH DK+QI 
Sbjct: 60  AAVEQTFVNKDGAGTLKLGQARGIAMLVPARAGLSVGEYAPNTIKKTVVGVGHADKRQID 119

Query: 128 MMLKMLMPESFFKGKDAADALAIAVCHAYHANSG 161
            M+++ +P     G DAADALAIA+CHA+HA +G
Sbjct: 120 HMVRLQLPGVEIAGPDAADALAIALCHAHHARAG 153


>gi|300087334|ref|YP_003757856.1| crossover junction endodeoxyribonuclease RuvC [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299527067|gb|ADJ25535.1| crossover junction endodeoxyribonuclease RuvC [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 166

 Score =  169 bits (430), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 51/136 (37%), Positives = 80/136 (58%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPG R  G+GI+D  G +L FV SGT+    +  +  RL  +Y  L  +I  ++
Sbjct: 1   MRVLGIDPGTRCLGYGIIDADGADLTFVISGTVKCADKTPMPERLKYIYSELVAIITRYQ 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ AA+E  F+ ++A + L LG+A+A+A+L+ A A + V EY P  IK  V G G   K 
Sbjct: 61  PQCAAIETPFMAENARSALTLGKAQAVAVLASANAGLEVYEYPPARIKSHVAGFGASAKD 120

Query: 125 QIHMMLKMLMPESFFK 140
           QI  M+ + +  +   
Sbjct: 121 QIIRMVTLQLNLAQPP 136


>gi|260578828|ref|ZP_05846735.1| Holliday junction nuclease [Corynebacterium jeikeium ATCC 43734]
 gi|97274756|sp|Q4JVD7|RUVC_CORJK RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|258603126|gb|EEW16396.1| Holliday junction nuclease [Corynebacterium jeikeium ATCC 43734]
          Length = 163

 Score =  169 bits (430), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 64/134 (47%), Gaps = 1/134 (0%)

Query: 8   IGIDPGLRRTGWGIVDVAGDNLCF-VSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           +GIDPGL R G  +V        + V+ G + +     +  RL +L++ +     +++P 
Sbjct: 1   MGIDPGLTRCGLSVVQAGKGRAVYPVAVGVVRTPSDMPVEQRLNKLFDAVEQWFDDYQPH 60

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+E+VF   +    +    A  + +L+ A   + V  Y P+ +KK++ G G  DK Q+
Sbjct: 61  VVALERVFERSNVSTVMNTAHASGVLMLAAARRGVDVHMYTPSEVKKSISGNGRADKAQM 120

Query: 127 HMMLKMLMPESFFK 140
             M+  ++  S   
Sbjct: 121 TRMITRILGLSEAP 134


>gi|320107653|ref|YP_004183243.1| crossover junction endodeoxyribonuclease RuvC [Terriglobus
           saanensis SP1PR4]
 gi|319926174|gb|ADV83249.1| crossover junction endodeoxyribonuclease RuvC [Terriglobus
           saanensis SP1PR4]
          Length = 168

 Score =  169 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 51/138 (36%), Positives = 76/138 (55%), Gaps = 4/138 (2%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGD----NLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           +R+ GID G   TGWG+V+V        L  +++G I    +     RL Q+Y  LT +I
Sbjct: 1   MRVFGIDCGTEYTGWGVVEVDDSGKRQRLVPIAAGAIKLHKKHKTPERLQQVYVELTGLI 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             + PE  A+E VF   +A + LKLG  R +A+L+ A   + V+EYAP +IK AV+G G 
Sbjct: 61  TAYEPEVVAIEDVFFAANAKSALKLGHVRGVAMLAAASCGLQVAEYAPLSIKSAVVGYGL 120

Query: 121 GDKKQIHMMLKMLMPESF 138
             K+Q+  M+  L+    
Sbjct: 121 AAKEQVQFMVARLLDLEK 138


>gi|226306410|ref|YP_002766370.1| Holliday junction endonuclease RuvC [Rhodococcus erythropolis PR4]
 gi|259495692|sp|C0ZZ46|RUVC_RHOE4 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|226185527|dbj|BAH33631.1| Holliday junction endonuclease RuvC [Rhodococcus erythropolis PR4]
          Length = 189

 Score =  169 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 39/134 (29%), Positives = 69/134 (51%), Gaps = 1/134 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVD-VAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G G+VD   G  +  ++   + +     L  RL ++ +     I+ +
Sbjct: 1   MRVLGVDPGLTRCGLGVVDGSNGRKVRPIAVDVVRTPPEMDLGSRLLRISDAAELWIEQY 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +PE  A+E+VF   +    +   QA  +  L+ A   IPV  + P+ +K AV G G+ DK
Sbjct: 61  KPEVVAIERVFAQHNVSTAMGTAQAGGVVALAAARRGIPVCFHTPSEVKAAVTGSGNADK 120

Query: 124 KQIHMMLKMLMPES 137
            Q+  M+  ++   
Sbjct: 121 AQVTAMVTRILNLK 134


>gi|297571392|ref|YP_003697166.1| crossover junction endodeoxyribonuclease RuvC [Arcanobacterium
           haemolyticum DSM 20595]
 gi|296931739|gb|ADH92547.1| crossover junction endodeoxyribonuclease RuvC [Arcanobacterium
           haemolyticum DSM 20595]
          Length = 206

 Score =  169 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 43/139 (30%), Positives = 71/139 (51%), Gaps = 1/139 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAG-DNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +RI+GIDPGL R G  ++D AG   +  VS G   +  + +   RL  + + L + I   
Sbjct: 1   MRILGIDPGLTRCGICVLDAAGARRISLVSVGVARTDPQMAPHQRLLMISQELEETIHAH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RP+  AVE+VF   +  + +   Q   I +L+ A A +PV  ++P+ +K AV G G   K
Sbjct: 61  RPDVVAVERVFAQDNVRSVMSTAQVVGIVLLAAAKASLPVGMHSPSEVKAAVTGNGRAQK 120

Query: 124 KQIHMMLKMLMPESFFKGK 142
            Q+  M++ ++        
Sbjct: 121 IQVQTMVQRILGLDKLPRP 139


>gi|297623207|ref|YP_003704641.1| crossover junction endodeoxyribonuclease RuvC [Truepera
           radiovictrix DSM 17093]
 gi|297164387|gb|ADI14098.1| crossover junction endodeoxyribonuclease RuvC [Truepera
           radiovictrix DSM 17093]
          Length = 168

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 76/164 (46%), Gaps = 1/164 (0%)

Query: 2   RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           R  + ++G+DPGL   G G V   G  +  + +  + +      + RL  LY  ++    
Sbjct: 5   RPPLTVVGLDPGLANLGLGAVREVGRAVTLLGAKLVRTSPSAEQSARLETLYREVSRFFA 64

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
            + P+  A+E  + ++      K+GQA  + +L+     + V EY P  +K+A++G G  
Sbjct: 65  LYEPDVLALEGQYFHRQREVAFKVGQACGVCLLAAQEHGLEVVEYGPMQVKQALVGTGRA 124

Query: 122 DKKQIHMMLK-MLMPESFFKGKDAADALAIAVCHAYHANSGYYK 164
            K Q+  M++  L  +   +    ADALA+A+ H         +
Sbjct: 125 SKAQVGYMVRATLGLKETPESHHVADALALALTHLSARQFQLLR 168


>gi|256371997|ref|YP_003109821.1| crossover junction endodeoxyribonuclease RuvC [Acidimicrobium
           ferrooxidans DSM 10331]
 gi|256008581|gb|ACU54148.1| crossover junction endodeoxyribonuclease RuvC [Acidimicrobium
           ferrooxidans DSM 10331]
          Length = 164

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 45/155 (29%), Positives = 81/155 (52%), Gaps = 2/155 (1%)

Query: 1   MRKS-IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDV 59
           M ++ +RI+G+DPGL R G+ +++  GD L  V +G + +  R   A RL ++ EG   V
Sbjct: 1   MPEARLRILGVDPGLARLGYAVIEATGDTLRLVGAGLVTTAARACRASRLHEIAEGFESV 60

Query: 60  IKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVG 119
           + ++ P EAA+E++   ++  + L + +   +  L+     +   + +PNT+K A    G
Sbjct: 61  LDDFDPTEAAIERLAFTRNVSSALPVSEVVGVVRLALWRRGVVAYDISPNTVKNAATSGG 120

Query: 120 HGDKKQIHMMLKMLMPESFFK-GKDAADALAIAVC 153
              K+Q+   +  L+         D ADA+AIA  
Sbjct: 121 SAAKEQVQRTVVRLLGLDEPPQPPDVADAMAIAYT 155


>gi|297243468|ref|ZP_06927400.1| Holliday junction resolvasome, endonuclease subunit [Gardnerella
           vaginalis AMD]
 gi|296888513|gb|EFH27253.1| Holliday junction resolvasome, endonuclease subunit [Gardnerella
           vaginalis AMD]
          Length = 193

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 42/139 (30%), Positives = 70/139 (50%), Gaps = 1/139 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           + I+G+DPGL R G G+++      L F+    + S    S   RL ++Y GL + I+ +
Sbjct: 1   MMILGVDPGLTRCGVGVIEAGVSRRLSFIHVDVLRSEPDLSQDLRLLKIYNGLVEKIERF 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P+  ++E+VF  ++    L   Q   IA+L+ A   IPV+ + P  +K AV G G   K
Sbjct: 61  SPDTVSIERVFAQENRNTVLGTAQVAGIAMLAAAQRNIPVALHTPTEVKLAVAGNGKAQK 120

Query: 124 KQIHMMLKMLMPESFFKGK 142
            Q+  M+  L+  +     
Sbjct: 121 PQVERMVARLLGLNVLPTP 139


>gi|189485464|ref|YP_001956405.1| crossover junction endodeoxyribonuclease RuvC [uncultured Termite
           group 1 bacterium phylotype Rs-D17]
 gi|238058359|sp|B1H0B2|RUVC_UNCTG RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|170287423|dbj|BAG13944.1| crossover junction endodeoxyribonuclease RuvC [uncultured Termite
           group 1 bacterium phylotype Rs-D17]
          Length = 190

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 46/137 (33%), Positives = 74/137 (54%), Gaps = 1/137 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           + I+GIDPGL  TGWG+V+  + D +  +  G I +     L  RL  +   L  VI  +
Sbjct: 1   MIILGIDPGLSLTGWGVVEAFSRDKVNPLQYGCIKTMPSVPLIQRLQTINTKLQSVIDKY 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +PE A++E++F  K   +   +GQ R   IL+ +L +IP+ EY P ++K A+ G G  DK
Sbjct: 61  KPEVASIEELFFFKATKSIAAVGQTRGAIILTASLNKIPLFEYNPKSVKTALTGYGSADK 120

Query: 124 KQIHMMLKMLMPESFFK 140
            Q+  ++K  +      
Sbjct: 121 YQMQRIVKTFLRLKEIP 137


>gi|261855147|ref|YP_003262430.1| crossover junction endodeoxyribonuclease RuvC [Halothiobacillus
           neapolitanus c2]
 gi|261835616|gb|ACX95383.1| crossover junction endodeoxyribonuclease RuvC [Halothiobacillus
           neapolitanus c2]
          Length = 188

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 54/160 (33%), Positives = 85/160 (53%), Gaps = 1/160 (0%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M + +R++GIDPG    G  ++D    +   +   ++      S   RL  +Y  +  +I
Sbjct: 1   MAR-LRVMGIDPGSVTMGVAVLDFERGSATQIHLQSVSLKPHGSFTARLGAIYAEVDRLI 59

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
               P+E A+EQ+F+ +   ++LKL QAR +AI +     + V EY P  +K+AV+G G 
Sbjct: 60  DTHAPDEFAIEQIFMYRSPESSLKLAQARGVAIAAAVGHGLTVHEYMPAVVKQAVVGTGR 119

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
            DK Q+  M+K L+  S     D ADA A+A+CH Y   S
Sbjct: 120 ADKLQVQHMIKRLLSLSESPPADGADAAAVALCHCYRRTS 159


>gi|229491983|ref|ZP_04385800.1| crossover junction endodeoxyribonuclease RuvC [Rhodococcus
           erythropolis SK121]
 gi|229321115|gb|EEN86919.1| crossover junction endodeoxyribonuclease RuvC [Rhodococcus
           erythropolis SK121]
          Length = 189

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 39/134 (29%), Positives = 69/134 (51%), Gaps = 1/134 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVD-VAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G G+VD   G  +  ++   + +     L  RL ++ +     I+ +
Sbjct: 1   MRVLGVDPGLTRCGLGVVDGSNGRKVRPIAVDVVRTPAEMDLGSRLLRISDAAELWIEQY 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +PE  A+E+VF   +    +   QA  +  L+ A   IPV  + P+ +K AV G G+ DK
Sbjct: 61  KPEVVAIERVFAQHNVSTAMGTAQAGGVVALAAARRGIPVCFHTPSEVKAAVTGSGNADK 120

Query: 124 KQIHMMLKMLMPES 137
            Q+  M+  ++   
Sbjct: 121 AQVTAMVTRILNLK 134


>gi|134098595|ref|YP_001104256.1| Holliday junction resolvase [Saccharopolyspora erythraea NRRL 2338]
 gi|291008208|ref|ZP_06566181.1| crossover junction endodeoxyribonuclease RuvC [Saccharopolyspora
           erythraea NRRL 2338]
 gi|166233295|sp|A4FBA6|RUVC_SACEN RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|133911218|emb|CAM01331.1| crossover junction endodeoxyribonuclease RuvC [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 199

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 41/135 (30%), Positives = 70/135 (51%), Gaps = 1/135 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G G+VD   G  +  V  G   +   Q L+ RL  + E + + +   
Sbjct: 1   MRVLGVDPGLTRCGIGVVDGGRGRTVTCVGVGVARTPADQELSARLLGVAEAVDEWLDTH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RPE  A+E+VF   +    +   Q   I  L+ A   +PV+ + P+ +K A+ G G  DK
Sbjct: 61  RPEVVAIERVFSQHNVRTVMGTAQVSGIVALAAARRGLPVAFHTPSEVKAAISGSGRADK 120

Query: 124 KQIHMMLKMLMPESF 138
           +Q+  M+  ++  + 
Sbjct: 121 RQVTTMVTKILGLAE 135


>gi|227549153|ref|ZP_03979202.1| Holliday junction resolvase [Corynebacterium lipophiloflavum DSM
           44291]
 gi|227078773|gb|EEI16736.1| Holliday junction resolvase [Corynebacterium lipophiloflavum DSM
           44291]
          Length = 165

 Score =  168 bits (428), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 52/153 (33%), Positives = 82/153 (53%), Gaps = 2/153 (1%)

Query: 8   IGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           +GIDPGL R G  IV    G  +  ++ G + +     L  RL +L   + + + +++P+
Sbjct: 1   MGIDPGLTRCGLSIVQAGRGRQVIPIAVGVVRTPAASELPQRLVRLSAAVREWLDDYQPD 60

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+E++F   +    +    A  + IL+ A   +PV  Y P+ +KKA+ G G  DKKQ+
Sbjct: 61  VIAMERIFERGNVSTVMHTAHAVGVLILAAAERGLPVHMYTPSEVKKAISGNGRADKKQM 120

Query: 127 HMMLKMLMPE-SFFKGKDAADALAIAVCHAYHA 158
             M+  ++      K  DAADALAIAVCH + A
Sbjct: 121 TTMITRILGLAEPPKPADAADALAIAVCHCWRA 153


>gi|197121425|ref|YP_002133376.1| crossover junction endodeoxyribonuclease RuvC [Anaeromyxobacter sp.
           K]
 gi|238689869|sp|B4UFX9|RUVC_ANASK RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|196171274|gb|ACG72247.1| crossover junction endodeoxyribonuclease RuvC [Anaeromyxobacter sp.
           K]
          Length = 185

 Score =  168 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 65/154 (42%), Positives = 87/154 (56%), Gaps = 2/154 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + ++GIDPG RR G+G+V   G  L  V SG +V      +A RL ++ EGL  +I   R
Sbjct: 1   MIVLGIDPGSRRCGYGVVAREGARLTVVESGVLV-PGDLPMAQRLGRILEGLDALIARAR 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P EA+VE VF      + L LGQAR +A+ + A A +PV EYAP+ +K A  G G   K 
Sbjct: 60  PVEASVESVFSGASPRSALVLGQARGVALAAAARAGLPVFEYAPSEVKLAFTGNGRAGKD 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHA 158
           Q+    +ML+  +     D ADALAIAVCH    
Sbjct: 120 QMLRTARMLLG-AAPDLSDEADALAIAVCHLARR 152


>gi|315453063|ref|YP_004073333.1| crossover junction endodeoxyribonuclease [Helicobacter felis ATCC
           49179]
 gi|315132115|emb|CBY82743.1| crossover junction endodeoxyribonuclease (ruvC) [Helicobacter felis
           ATCC 49179]
          Length = 165

 Score =  168 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 50/155 (32%), Positives = 80/155 (51%), Gaps = 5/155 (3%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R+ G+GIVDV       + +G I       L  ++ ++ EG   ++  +   
Sbjct: 2   ILGIDPGSRKCGYGIVDVHS---KLIGAGFIH-IQNAPLQTQILEMVEGFNQILNAYPIT 57

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E A+E +F   +  + LKL Q R    L    +    SEY P  +K+A+ G G   K+Q+
Sbjct: 58  EVAMEDIFYAHNPKSVLKLAQFRGALSLKILQSVGKFSEYTPLQVKRAISGHGKASKEQV 117

Query: 127 HMML-KMLMPESFFKGKDAADALAIAVCHAYHANS 160
             M+ K+L  ++  K  D  DALA+A+ HA   ++
Sbjct: 118 AFMVGKILGLKNAIKPLDITDALAVALTHAQQRHA 152


>gi|50954746|ref|YP_062034.1| Holliday junction resolvase [Leifsonia xyli subsp. xyli str.
           CTCB07]
 gi|71649497|sp|Q6AFB6|RUVC_LEIXX RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|50951228|gb|AAT88929.1| holliday juction resolvase [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 208

 Score =  168 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 40/136 (29%), Positives = 69/136 (50%), Gaps = 1/136 (0%)

Query: 4   SIRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
           +IR++GIDPGL R G G+VDV        V    I +     L  RL  + +G+  ++  
Sbjct: 2   TIRVLGIDPGLTRCGVGVVDVRRDRRATLVEVTVIRTPAEMPLEQRLLAVGDGIAALLDR 61

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
           + P   A+E+VF   +    + + Q   +A+ + A   +PV+ + P+ +K A+ G G  D
Sbjct: 62  YSPAAVAIERVFAQHNLRTVIGVAQVSGVALHTAAQRGLPVALHTPSEVKAAITGYGSAD 121

Query: 123 KKQIHMMLKMLMPESF 138
           KKQ+  M+  ++    
Sbjct: 122 KKQVQAMVARVLGLPE 137


>gi|283783301|ref|YP_003374055.1| crossover junction endodeoxyribonuclease RuvC [Gardnerella
           vaginalis 409-05]
 gi|283442088|gb|ADB14554.1| crossover junction endodeoxyribonuclease RuvC [Gardnerella
           vaginalis 409-05]
          Length = 193

 Score =  168 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 42/139 (30%), Positives = 70/139 (50%), Gaps = 1/139 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           + I+G+DPGL R G G+++      L F+    + S    S   RL ++Y GL + I+ +
Sbjct: 1   MMILGVDPGLTRCGVGVIEAGVSRRLSFIHVDVLRSEPDLSQDLRLLKIYNGLVEKIERF 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P+  ++E+VF  ++    L   Q   IA+L+ A   IPV+ + P  +K AV G G   K
Sbjct: 61  SPDTVSIERVFAQENRNTVLGTAQVAGIAMLAAAQRNIPVALHTPTEVKLAVAGNGKAQK 120

Query: 124 KQIHMMLKMLMPESFFKGK 142
            Q+  M+  L+  +     
Sbjct: 121 PQVERMVARLLGLNVLPTP 139


>gi|227833243|ref|YP_002834950.1| crossover junction endodeoxyribonuclease [Corynebacterium
           aurimucosum ATCC 700975]
 gi|227454259|gb|ACP33012.1| crossover junction endodeoxyribonuclease [Corynebacterium
           aurimucosum ATCC 700975]
          Length = 226

 Score =  168 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 40/137 (29%), Positives = 72/137 (52%), Gaps = 1/137 (0%)

Query: 3   KSIRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           + +R++GIDPGL R G  +V    G  +  ++ G + +   + L  RL  L   + + + 
Sbjct: 27  EGLRVMGIDPGLTRCGLSVVQAGRGRGVIPIAVGVVRTPSDKDLGERLKLLSVAVREWMD 86

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
           +++P+  A+E+VF        ++   A  + +L+ A   IPV  Y P+ +KKA+ G G  
Sbjct: 87  DYKPDVVALERVFERGQVSTVMQTAHAVGVLVLAAAERDIPVHMYTPSEVKKAISGNGRA 146

Query: 122 DKKQIHMMLKMLMPESF 138
           DKKQ+  M+  ++  S 
Sbjct: 147 DKKQMTAMITRILGLSE 163


>gi|271967391|ref|YP_003341587.1| Crossover junction endodeoxyribonuclease [Streptosporangium roseum
           DSM 43021]
 gi|270510566|gb|ACZ88844.1| Crossover junction endodeoxyribonuclease [Streptosporangium roseum
           DSM 43021]
          Length = 200

 Score =  168 bits (427), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 55/163 (33%), Positives = 88/163 (53%), Gaps = 3/163 (1%)

Query: 1   MRKS-IRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTD 58
           MR   +R++G+DPGL R G G V+   G  L  V  G + +     +  RL  +  G+  
Sbjct: 1   MRLPELRVMGVDPGLTRCGLGAVEGRPGAPLSLVKVGVVRTPADDEIGARLVAIEAGIEQ 60

Query: 59  VIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGV 118
            +   RP+  AVE+VF   +    +   QA A+AIL  +   +PV+ + P+ +K A+ G 
Sbjct: 61  WLDEIRPDAVAVERVFAQHNLRTVMGTAQASAVAILCASRRGLPVAMHTPSEVKAAITGS 120

Query: 119 GHGDKKQIHMMLKMLM-PESFFKGKDAADALAIAVCHAYHANS 160
           G  DK+Q+  M+  L+  ++  K  DAADALA+A+CH +   +
Sbjct: 121 GTADKQQVGTMVTRLLRLDAMPKPADAADALALAICHVWRGGA 163


>gi|88705604|ref|ZP_01103314.1| Crossover junction endodeoxyribonuclease RuvC [Congregibacter
           litoralis KT71]
 gi|88700117|gb|EAQ97226.1| Crossover junction endodeoxyribonuclease RuvC [Congregibacter
           litoralis KT71]
          Length = 172

 Score =  168 bits (427), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 52/135 (38%), Positives = 77/135 (57%), Gaps = 1/135 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG ++TG+GI+        +++SG I       L  RL  + E + ++++   P 
Sbjct: 4   ILGIDPGSQKTGFGIISTLNGKNSYITSGVIRLPKGA-LPERLRIIAESVAELVELHGPT 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E +VEQVF+ K A A LKLGQAR  AI+   L  + VSEY+   IK++V+G G  DK Q+
Sbjct: 63  ELSVEQVFLAKSADAALKLGQARGAAIVPCVLRGLEVSEYSARQIKQSVVGTGAADKAQV 122

Query: 127 HMMLKMLMPESFFKG 141
             M+K L+       
Sbjct: 123 QHMVKALLKLPGAPQ 137


>gi|296282047|ref|ZP_06860045.1| Holliday junction resolvase [Citromicrobium bathyomarinum JL354]
          Length = 155

 Score =  168 bits (427), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 49/129 (37%), Positives = 78/129 (60%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+G+DP L  TGWG++   G  L  +++G I +  +  +  RL QL   L  VI+ +RP 
Sbjct: 4   ILGLDPSLTCTGWGVIRSEGSRLSHIANGQIATDAKAPMTERLAQLQRELAVVIEQYRPA 63

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A E++F+NK+  +TLKL QAR   + +     + V E+A   +KK+V+G G  +K+Q+
Sbjct: 64  RGACEEIFLNKNPKSTLKLAQARGSVLAACGAHGLDVREHAARYVKKSVVGTGAAEKRQV 123

Query: 127 HMMLKMLMP 135
             MLK+L+P
Sbjct: 124 QAMLKVLLP 132


>gi|319786204|ref|YP_004145679.1| crossover junction endodeoxyribonuclease RuvC [Pseudoxanthomonas
           suwonensis 11-1]
 gi|317464716|gb|ADV26448.1| crossover junction endodeoxyribonuclease RuvC [Pseudoxanthomonas
           suwonensis 11-1]
          Length = 181

 Score =  168 bits (426), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 59/136 (43%), Positives = 83/136 (61%), Gaps = 1/136 (0%)

Query: 4   SIRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
           ++RI+GIDPG +RTG GI+DV  G  +  V    +V       A RL +L  GLT +I+ 
Sbjct: 10  AVRILGIDPGSQRTGVGIIDVEAGGRVRHVHHQPLVLLGEGDFAARLKRLLHGLTGLIEE 69

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
           ++P+E A+EQVFV + A + LKLGQAR  AI +  L  +PVSEYA   +K AV+G G  D
Sbjct: 70  YQPQEVAIEQVFVGRSADSALKLGQARGAAISAVVLRDLPVSEYAAREVKLAVVGTGAAD 129

Query: 123 KKQIHMMLKMLMPESF 138
           K Q+  M+  ++    
Sbjct: 130 KAQVQHMVAAMLGLPG 145


>gi|322435997|ref|YP_004218209.1| crossover junction endodeoxyribonuclease RuvC [Acidobacterium sp.
           MP5ACTX9]
 gi|321163724|gb|ADW69429.1| crossover junction endodeoxyribonuclease RuvC [Acidobacterium sp.
           MP5ACTX9]
          Length = 172

 Score =  168 bits (426), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 49/137 (35%), Positives = 78/137 (56%), Gaps = 4/137 (2%)

Query: 5   IRIIGIDPGLRRTGWGIVDVA----GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           +R+ GID G   TG+G+V++        L   ++GTI    +++   RL +++  LT  I
Sbjct: 1   MRVFGIDCGTEFTGYGVVEMDARARNSRLVHCAAGTIRLNKKEATPTRLVKIFGELTAQI 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
               P+  A+E+VF + +A + LKLGQ R +A+L+ A    PV EYAP +IK AV+G G 
Sbjct: 61  TLHEPDVVAIEEVFFSANAKSALKLGQVRGVAMLAAATCGKPVVEYAPLSIKSAVVGYGL 120

Query: 121 GDKKQIHMMLKMLMPES 137
             K+Q+  M+  L+   
Sbjct: 121 AAKEQVQFMVMRLLALE 137


>gi|262202230|ref|YP_003273438.1| crossover junction endodeoxyribonuclease RuvC [Gordonia bronchialis
           DSM 43247]
 gi|262085577|gb|ACY21545.1| crossover junction endodeoxyribonuclease RuvC [Gordonia bronchialis
           DSM 43247]
          Length = 189

 Score =  168 bits (426), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 47/156 (30%), Positives = 78/156 (50%), Gaps = 2/156 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G  +V+   G  +  +    + +     LA RL  +Y      I   
Sbjct: 1   MRVMGVDPGLTRCGIALVESGRGRAVTALDVDVVRTPTDMELADRLLAVYTAACHWIDVH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +P+  A+E+VF        +   QA  +  L+     IPV  + P+ +K AV G G  DK
Sbjct: 61  QPDVVAIERVFAQNQVSTAMGTAQAGGVIALAAGQRGIPVRFHTPSEVKAAVTGSGRADK 120

Query: 124 KQIHMMLKMLMP-ESFFKGKDAADALAIAVCHAYHA 158
            Q+  M+  ++  ++  +  DAADALA+A+CH +  
Sbjct: 121 AQVTAMVTRILGMQTKPRPADAADALALAICHCWRG 156


>gi|254391314|ref|ZP_05006518.1| crossover junction endodeoxyribonuclease ruvC [Streptomyces
           clavuligerus ATCC 27064]
 gi|197705005|gb|EDY50817.1| crossover junction endodeoxyribonuclease ruvC [Streptomyces
           clavuligerus ATCC 27064]
          Length = 196

 Score =  168 bits (426), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 45/133 (33%), Positives = 64/133 (48%), Gaps = 1/133 (0%)

Query: 11  DPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAA 69
           DPGL R G G+V+   G  L  +  G + S     LA RL  + +GL   +  +RPE  A
Sbjct: 2   DPGLTRCGVGVVEGEAGRPLAMLGVGVVRSSPDADLAGRLVAIEQGLERWLDEYRPERVA 61

Query: 70  VEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMM 129
           VE+VF   +    +   QA A+A+L      IPV  + P+ +K AV G G  DK Q+  M
Sbjct: 62  VERVFSQHNVRTVMGTAQASAVAMLCAGRRGIPVVLHTPSEVKAAVTGTGRADKAQVGAM 121

Query: 130 LKMLMPESFFKGK 142
           +  L+        
Sbjct: 122 VTRLLRLDAPPRP 134


>gi|302541122|ref|ZP_07293464.1| crossover junction endodeoxyribonuclease RuvC [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302458740|gb|EFL21833.1| crossover junction endodeoxyribonuclease RuvC [Streptomyces
           himastatinicus ATCC 53653]
          Length = 184

 Score =  168 bits (426), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 57/150 (38%), Positives = 83/150 (55%), Gaps = 2/150 (1%)

Query: 11  DPGLRRTGWGIVD-VAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAA 69
           DPGL R G G+VD VAG  L  V  G I +     +  RL  +  G+ + +   RPE  A
Sbjct: 2   DPGLTRCGIGVVDGVAGRPLRMVGVGVIRTPADAEIGDRLVLVERGIEEWLDAHRPEFVA 61

Query: 70  VEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMM 129
           VE+VF   +    +   QA A+A+L  A   +PV+ + P+ +K AV G G  +K Q+  M
Sbjct: 62  VERVFSQHNVQTVMGTAQASAVAMLCAARRGLPVALHTPSEVKAAVTGSGRAEKAQVGAM 121

Query: 130 LKMLM-PESFFKGKDAADALAIAVCHAYHA 158
           +  L+  ++  K  DAADALA+A+CH + A
Sbjct: 122 VTRLLRLDAPPKPADAADALALAICHIWRA 151


>gi|262184229|ref|ZP_06043650.1| crossover junction endodeoxyribonuclease [Corynebacterium
           aurimucosum ATCC 700975]
          Length = 203

 Score =  168 bits (426), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 40/137 (29%), Positives = 72/137 (52%), Gaps = 1/137 (0%)

Query: 3   KSIRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           + +R++GIDPGL R G  +V    G  +  ++ G + +   + L  RL  L   + + + 
Sbjct: 4   EGLRVMGIDPGLTRCGLSVVQAGRGRGVIPIAVGVVRTPSDKDLGERLKLLSVAVREWMD 63

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
           +++P+  A+E+VF        ++   A  + +L+ A   IPV  Y P+ +KKA+ G G  
Sbjct: 64  DYKPDVVALERVFERGQVSTVMQTAHAVGVLVLAAAERDIPVHMYTPSEVKKAISGNGRA 123

Query: 122 DKKQIHMMLKMLMPESF 138
           DKKQ+  M+  ++  S 
Sbjct: 124 DKKQMTAMITRILGLSE 140


>gi|220916122|ref|YP_002491426.1| crossover junction endodeoxyribonuclease RuvC [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|254767455|sp|B8JF03|RUVC_ANAD2 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|219953976|gb|ACL64360.1| crossover junction endodeoxyribonuclease RuvC [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 185

 Score =  167 bits (425), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 64/154 (41%), Positives = 87/154 (56%), Gaps = 2/154 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + ++GIDPG RR G+G+V   G  L  V SG +V      +A RL ++ +GL  +I   R
Sbjct: 1   MIVLGIDPGSRRCGYGVVAREGARLTVVESGVLV-PGDLPMAQRLGRILDGLDALIARAR 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P EA+VE VF      + L LGQAR +A+ + A A +PV EYAP+ +K A  G G   K 
Sbjct: 60  PLEASVESVFSGASPRSALVLGQARGVALAAAARAGLPVFEYAPSEVKLAFTGNGRAGKD 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHA 158
           Q+    +ML+  +     D ADALAIAVCH    
Sbjct: 120 QMLRTARMLLG-AAPGLSDEADALAIAVCHLARR 152


>gi|82703834|ref|YP_413400.1| crossover junction endodeoxyribonuclease RuvC [Nitrosospira
           multiformis ATCC 25196]
 gi|82411899|gb|ABB76008.1| Holliday junction endonuclease RuvC [Nitrosospira multiformis ATCC
           25196]
          Length = 133

 Score =  167 bits (425), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 49/112 (43%), Positives = 70/112 (62%)

Query: 45  LAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVS 104
           +  RL  + + L +VI   +P+  A+EQVFVN +  +TL LGQAR  AI +  L  + V+
Sbjct: 1   MPLRLKSIMDHLNEVIAEHKPDHVAIEQVFVNVNPKSTLMLGQARGAAICTAVLNNLSVA 60

Query: 105 EYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
           EY    IK+AV+G GH  K+Q+  M++ L+  S     DAADALA A+CHA+
Sbjct: 61  EYTALQIKQAVVGEGHARKEQVQEMVRRLLRLSGQPASDAADALACAICHAH 112


>gi|163840743|ref|YP_001625148.1| Holliday junction resolvase [Renibacterium salmoninarum ATCC 33209]
 gi|189046075|sp|A9WSE6|RUVC_RENSM RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|162954219|gb|ABY23734.1| crossover junction endodeoxyribonuclease [Renibacterium
           salmoninarum ATCC 33209]
          Length = 193

 Score =  167 bits (424), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 55/166 (33%), Positives = 85/166 (51%), Gaps = 2/166 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R+ G+DPGL R G+G+VDVA +     V+ G I S     L+ RL  + E +   +   
Sbjct: 1   MRVFGVDPGLTRCGFGVVDVAANRSASLVAVGVIGSSSELPLSQRLLVISESIDQWLDTH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P+  AVE+VF   +    + + QA  I I + A   I V+ + P+ +K AV G G  DK
Sbjct: 61  SPDVLAVERVFSQTNLSTVMGVAQASGIVIAAAAKRGIAVALHTPSEVKAAVTGNGRADK 120

Query: 124 KQIHMMLKMLMPES-FFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
             +  M+  ++         DAADALA+A+ HA+ +  G    A +
Sbjct: 121 IAVTAMVTRILKLKVAPTPADAADALALAITHAWRSGPGSTAAAGE 166


>gi|86157378|ref|YP_464163.1| crossover junction endodeoxyribonuclease RuvC [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|123764248|sp|Q2IPJ7|RUVC_ANADE RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|85773889|gb|ABC80726.1| crossover junction endodeoxyribonuclease RuvC [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 185

 Score =  167 bits (424), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 64/154 (41%), Positives = 87/154 (56%), Gaps = 2/154 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + ++GIDPG RR G+G+V   G  L  V SG +V      +A RL ++ +GL  +I   R
Sbjct: 1   MIVLGIDPGSRRCGYGVVAREGARLTVVESGVLV-PGDLPMAQRLGRILDGLDALIARAR 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P EA+VE VF      + L LGQAR +A+ + A A +PV EYAP+ +K A  G G   K 
Sbjct: 60  PAEASVEAVFSGASPRSALVLGQARGVALAAAARAGLPVFEYAPSEVKLAFTGNGRAGKD 119

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHA 158
           Q+    +ML+  +     D ADALAIAVCH    
Sbjct: 120 QMLRTARMLLG-AAPGLSDEADALAIAVCHLARR 152


>gi|148272997|ref|YP_001222558.1| Holliday junction resolvase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|167012677|sp|A5CS08|RUVC_CLAM3 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|147830927|emb|CAN01871.1| crossover junction endodeoxyribonuclease [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
          Length = 202

 Score =  167 bits (424), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 41/139 (29%), Positives = 71/139 (51%), Gaps = 1/139 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +RI+GIDPGL R G G+VDV A  +   V    + +     L  RL  + +G+ ++++  
Sbjct: 1   MRILGIDPGLTRCGVGVVDVYADRSARLVDVQVVRTSPTAELHHRLLAVGDGIEELVERH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RP   A+E+VF   +    + + Q   +A++  A   + V+ + P+ +K AV G G  DK
Sbjct: 61  RPSVVAIERVFAQDNLSTVMGVAQITGVALVGAARRGLDVALHTPSEVKAAVTGYGQADK 120

Query: 124 KQIHMMLKMLMPESFFKGK 142
           KQ+  M+  ++        
Sbjct: 121 KQVATMVARILGLDELPTP 139


>gi|329893678|ref|ZP_08269812.1| Crossover junction endodeoxyribonuclease RuvC [gamma
           proteobacterium IMCC3088]
 gi|328923605|gb|EGG30917.1| Crossover junction endodeoxyribonuclease RuvC [gamma
           proteobacterium IMCC3088]
          Length = 172

 Score =  167 bits (424), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 51/134 (38%), Positives = 80/134 (59%), Gaps = 1/134 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R+TG+GI++       +V+SG I   V +++  RL  L E L ++I+ + P 
Sbjct: 4   ILGIDPGSRKTGFGIIEFNQGKSRYVTSGVIRL-VDRAIPARLKVLSESLEELIQCYSPS 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E ++EQVF+ + A A LKLG AR  AI++     + V+EY+   IK++V+G G  DK Q+
Sbjct: 63  ELSIEQVFLARSADAALKLGHARGAAIVACVTRGMSVNEYSARQIKQSVVGSGGADKSQV 122

Query: 127 HMMLKMLMPESFFK 140
             M+  L+      
Sbjct: 123 QHMVSRLLSLPGVP 136


>gi|325917781|ref|ZP_08179965.1| Holliday junction endonuclease RuvC [Xanthomonas vesicatoria ATCC
           35937]
 gi|325535997|gb|EGD07809.1| Holliday junction endonuclease RuvC [Xanthomonas vesicatoria ATCC
           35937]
          Length = 174

 Score =  167 bits (424), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 54/134 (40%), Positives = 79/134 (58%), Gaps = 1/134 (0%)

Query: 6   RIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           RI+GIDPG +RTG GI+DV  G     V    ++       A RL +L  GL ++I+ +R
Sbjct: 3   RILGIDPGSQRTGVGIIDVDEGGRSRHVHHAPLLLLGEGDFAQRLKRLLHGLGELIETYR 62

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+E A+E+VF+ K A + LKLG AR  AI +  +  +PV EYA   IK A++G G  DK 
Sbjct: 63  PDEVAIEKVFMGKSADSALKLGHARGAAICAVVMRDLPVHEYAATEIKLALVGKGGADKV 122

Query: 125 QIHMMLKMLMPESF 138
           Q+  M+ +++    
Sbjct: 123 QVQHMVGIMLNLKG 136


>gi|256832602|ref|YP_003161329.1| crossover junction endodeoxyribonuclease RuvC [Jonesia
           denitrificans DSM 20603]
 gi|256686133|gb|ACV09026.1| crossover junction endodeoxyribonuclease RuvC [Jonesia
           denitrificans DSM 20603]
          Length = 190

 Score =  167 bits (424), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 40/134 (29%), Positives = 72/134 (53%), Gaps = 1/134 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVD-VAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G G+VD +AG     V+ G   S   +S+  RL  + + L + +   
Sbjct: 1   MRVLGVDPGLTRCGIGVVDSIAGRRARLVAVGVARSTHTESIDVRLLAISQQLDEWLDRH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P+  A+E+VF   +    +   Q   +A+++ A   +PV+ + P+ +K AV G G   K
Sbjct: 61  IPDVVAIERVFAQNNLSTVMGTAQVAGLAMVAAAKRGVPVALHTPSEVKAAVTGHGGAHK 120

Query: 124 KQIHMMLKMLMPES 137
           +Q+  M+  ++  S
Sbjct: 121 EQVQRMVANILGLS 134


>gi|254797272|ref|YP_003082114.1| crossover junction endodeoxyribonuclease RuvC [Neorickettsia
           risticii str. Illinois]
 gi|254590513|gb|ACT69875.1| crossover junction endodeoxyribonuclease RuvC [Neorickettsia
           risticii str. Illinois]
          Length = 166

 Score =  167 bits (424), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 52/147 (35%), Positives = 87/147 (59%), Gaps = 3/147 (2%)

Query: 8   IGIDPGLRRTGWGIVDVAGD-NLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           +G+DPGL RTGW +V+  G  ++ ++ SG + +   ++L  RL +++ G++DVI+   P 
Sbjct: 6   LGVDPGLIRTGWAVVEYDGPCDVRYIDSGVVKTASHENLFSRLEKIHRGISDVIERVNPS 65

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
            A +E+VFVN +  ++L L   R   IL+ AL  + + E+AP+ +KK + G G   K Q+
Sbjct: 66  IAVLEKVFVNSNPYSSLNLAYCRGALILTLALKGLFIVEFAPSVLKKRITGNGRATKAQV 125

Query: 127 HMMLKMLMPESF--FKGKDAADALAIA 151
             M++ L+       K  D  DALA+A
Sbjct: 126 KYMVEQLLGLDPCLSKYSDLYDALALA 152


>gi|170781147|ref|YP_001709479.1| Holliday junction resolvase [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|189046061|sp|B0REB8|RUVC_CLAMS RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|169155715|emb|CAQ00836.1| crossover junction endodeoxyribonuclease RuvC [Clavibacter
           michiganensis subsp. sepedonicus]
          Length = 204

 Score =  167 bits (424), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 41/139 (29%), Positives = 70/139 (50%), Gaps = 1/139 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +RI+GIDPGL R G G+VDV A  +   V    + +     L  RL  + +G+ +++   
Sbjct: 1   MRILGIDPGLTRCGVGVVDVYADRSARLVDVQVVRTSPTAELHHRLLAVGDGIEELVDRH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RP   AVE+VF   +    + + Q   +A++  A   + V+ + P+ +K AV G G  DK
Sbjct: 61  RPSVVAVERVFAQDNLSTVMGVAQITGVALVGAARRGLDVALHTPSEVKAAVTGYGQADK 120

Query: 124 KQIHMMLKMLMPESFFKGK 142
           +Q+  M+  ++        
Sbjct: 121 RQVATMVARILGLDELPTP 139


>gi|88608702|ref|YP_506819.1| crossover junction endodeoxyribonuclease RuvC [Neorickettsia
           sennetsu str. Miyayama]
 gi|123763686|sp|Q2GCH7|RUVC_NEOSM RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|88600871|gb|ABD46339.1| crossover junction endodeoxyribonuclease RuvC [Neorickettsia
           sennetsu str. Miyayama]
          Length = 166

 Score =  167 bits (423), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 54/147 (36%), Positives = 88/147 (59%), Gaps = 3/147 (2%)

Query: 8   IGIDPGLRRTGWGIVDVAG-DNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           +G+DPGL RTGW +V+  G  N+ ++ SG + +  + SL+ RL +++ G++DVI+   P 
Sbjct: 6   LGVDPGLLRTGWAVVEYDGLCNVRYIDSGIVKTASQGSLSARLEKIHRGISDVIEKVNPS 65

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
            A +E+VFVN +  ++L L   R   IL+ AL  + + E+AP+ +KK + G G   K Q+
Sbjct: 66  VAVLEKVFVNNNPYSSLNLAYCRGALILTLALKGLFIVEFAPSVLKKRITGNGRATKAQV 125

Query: 127 HMMLKMLMPESF--FKGKDAADALAIA 151
             M++ L+       K  D  DALA+A
Sbjct: 126 KYMVEQLLGLDPCLSKYSDLYDALALA 152


>gi|15609731|ref|NP_217110.1| Holliday junction resolvase [Mycobacterium tuberculosis H37Rv]
 gi|15842134|ref|NP_337171.1| Holliday junction resolvase [Mycobacterium tuberculosis CDC1551]
 gi|31793778|ref|NP_856271.1| Holliday junction resolvase [Mycobacterium bovis AF2122/97]
 gi|121638479|ref|YP_978703.1| Holliday junction resolvase [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|148662433|ref|YP_001283956.1| Holliday junction resolvase [Mycobacterium tuberculosis H37Ra]
 gi|148823789|ref|YP_001288543.1| Holliday junction resolvase [Mycobacterium tuberculosis F11]
 gi|167967068|ref|ZP_02549345.1| Holliday junction resolvase [Mycobacterium tuberculosis H37Ra]
 gi|215404544|ref|ZP_03416725.1| Holliday junction resolvase [Mycobacterium tuberculosis 02_1987]
 gi|215412370|ref|ZP_03421130.1| Holliday junction resolvase [Mycobacterium tuberculosis 94_M4241A]
 gi|215427997|ref|ZP_03425916.1| Holliday junction resolvase [Mycobacterium tuberculosis T92]
 gi|215431549|ref|ZP_03429468.1| Holliday junction resolvase [Mycobacterium tuberculosis EAS054]
 gi|215446845|ref|ZP_03433597.1| Holliday junction resolvase [Mycobacterium tuberculosis T85]
 gi|218754332|ref|ZP_03533128.1| Holliday junction resolvase [Mycobacterium tuberculosis GM 1503]
 gi|219558598|ref|ZP_03537674.1| Holliday junction resolvase [Mycobacterium tuberculosis T17]
 gi|224990973|ref|YP_002645660.1| Holliday junction resolvase [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|253798324|ref|YP_003031325.1| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
           tuberculosis KZN 1435]
 gi|254232712|ref|ZP_04926039.1| crossover junction endodeoxyribonuclease ruvC (holliday junction
           nuclease) [Mycobacterium tuberculosis C]
 gi|254365263|ref|ZP_04981308.1| crossover junction endodeoxyribonuclease ruvC (holliday junction
           nuclease) [Mycobacterium tuberculosis str. Haarlem]
 gi|254551645|ref|ZP_05142092.1| Holliday junction resolvase [Mycobacterium tuberculosis '98-R604
           INH-RIF-EM']
 gi|260187607|ref|ZP_05765081.1| Holliday junction resolvase [Mycobacterium tuberculosis CPHL_A]
 gi|260201722|ref|ZP_05769213.1| Holliday junction resolvase [Mycobacterium tuberculosis T46]
 gi|260205916|ref|ZP_05773407.1| Holliday junction resolvase [Mycobacterium tuberculosis K85]
 gi|289444133|ref|ZP_06433877.1| crossover junction endodeoxyribonuclease RuvC [Mycobacterium
           tuberculosis T46]
 gi|289448244|ref|ZP_06437988.1| crossover junction endodeoxyribonuclease RuvC [Mycobacterium
           tuberculosis CPHL_A]
 gi|289553617|ref|ZP_06442827.1| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
           tuberculosis KZN 605]
 gi|289570765|ref|ZP_06450992.1| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
           tuberculosis T17]
 gi|289575304|ref|ZP_06455531.1| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
           tuberculosis K85]
 gi|289746387|ref|ZP_06505765.1| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
           tuberculosis 02_1987]
 gi|289751218|ref|ZP_06510596.1| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
           tuberculosis T92]
 gi|289754713|ref|ZP_06514091.1| holliday junction resolvase [Mycobacterium tuberculosis EAS054]
 gi|289758725|ref|ZP_06518103.1| holliday junction resolvase [Mycobacterium tuberculosis T85]
 gi|289762767|ref|ZP_06522145.1| crossover junction endodeoxyribonuclease ruvC (holliday junction
           nuclease) [Mycobacterium tuberculosis GM 1503]
 gi|294994297|ref|ZP_06799988.1| Holliday junction resolvase [Mycobacterium tuberculosis 210]
 gi|297635204|ref|ZP_06952984.1| Holliday junction resolvase [Mycobacterium tuberculosis KZN 4207]
 gi|297732197|ref|ZP_06961315.1| Holliday junction resolvase [Mycobacterium tuberculosis KZN R506]
 gi|298526069|ref|ZP_07013478.1| holliday junction nuclease [Mycobacterium tuberculosis 94_M4241A]
 gi|306794077|ref|ZP_07432379.1| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
           tuberculosis SUMu005]
 gi|306798491|ref|ZP_07436793.1| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
           tuberculosis SUMu006]
 gi|306804354|ref|ZP_07441022.1| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
           tuberculosis SUMu008]
 gi|306972983|ref|ZP_07485644.1| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
           tuberculosis SUMu010]
 gi|307080693|ref|ZP_07489863.1| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
           tuberculosis SUMu011]
 gi|313659532|ref|ZP_07816412.1| Holliday junction resolvase [Mycobacterium tuberculosis KZN V2475]
 gi|54039581|sp|P66761|RUVC_MYCBO RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|54042208|sp|P66760|RUVC_MYCTU RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|166233269|sp|A1KLU2|RUVC_MYCBP RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|166233271|sp|A5U5U4|RUVC_MYCTA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|254767479|sp|C1AF63|RUVC_MYCBT RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|1478218|emb|CAB01281.1| PROBABLE CROSSOVER JUNCTION ENDODEOXYRIBONUCLEASE RUVC (HOLLIDAY
           JUNCTION NUCLEASE) (HOLLIDAY JUNCTION RESOLVASE)
           [Mycobacterium tuberculosis H37Rv]
 gi|13882418|gb|AAK46985.1| Holliday junction nuclease [Mycobacterium tuberculosis CDC1551]
 gi|31619372|emb|CAD94810.1| PROBABLE CROSSOVER JUNCTION ENDODEOXYRIBONUCLEASE RUVC (HOLLIDAY
           JUNCTION NUCLEASE) (HOLLIDAY JUNCTION RESOLVASE)
           [Mycobacterium bovis AF2122/97]
 gi|121494127|emb|CAL72605.1| Probable crossover junction endodeoxyribonuclease ruvC
           [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|124601771|gb|EAY60781.1| crossover junction endodeoxyribonuclease ruvC (holliday junction
           nuclease) [Mycobacterium tuberculosis C]
 gi|134150776|gb|EBA42821.1| crossover junction endodeoxyribonuclease ruvC (holliday junction
           nuclease) [Mycobacterium tuberculosis str. Haarlem]
 gi|148506585|gb|ABQ74394.1| Holliday junction resolvase [Mycobacterium tuberculosis H37Ra]
 gi|148722316|gb|ABR06941.1| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
           tuberculosis F11]
 gi|224774086|dbj|BAH26892.1| Holliday junction resolvase [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|253319827|gb|ACT24430.1| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
           tuberculosis KZN 1435]
 gi|289417052|gb|EFD14292.1| crossover junction endodeoxyribonuclease RuvC [Mycobacterium
           tuberculosis T46]
 gi|289421202|gb|EFD18403.1| crossover junction endodeoxyribonuclease RuvC [Mycobacterium
           tuberculosis CPHL_A]
 gi|289438249|gb|EFD20742.1| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
           tuberculosis KZN 605]
 gi|289539735|gb|EFD44313.1| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
           tuberculosis K85]
 gi|289544519|gb|EFD48167.1| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
           tuberculosis T17]
 gi|289686915|gb|EFD54403.1| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
           tuberculosis 02_1987]
 gi|289691805|gb|EFD59234.1| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
           tuberculosis T92]
 gi|289695300|gb|EFD62729.1| holliday junction resolvase [Mycobacterium tuberculosis EAS054]
 gi|289710273|gb|EFD74289.1| crossover junction endodeoxyribonuclease ruvC (holliday junction
           nuclease) [Mycobacterium tuberculosis GM 1503]
 gi|289714289|gb|EFD78301.1| holliday junction resolvase [Mycobacterium tuberculosis T85]
 gi|298495863|gb|EFI31157.1| holliday junction nuclease [Mycobacterium tuberculosis 94_M4241A]
 gi|308337557|gb|EFP26408.1| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
           tuberculosis SUMu005]
 gi|308341224|gb|EFP30075.1| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
           tuberculosis SUMu006]
 gi|308349031|gb|EFP37882.1| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
           tuberculosis SUMu008]
 gi|308357599|gb|EFP46450.1| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
           tuberculosis SUMu010]
 gi|308361541|gb|EFP50392.1| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
           tuberculosis SUMu011]
 gi|323718790|gb|EGB27947.1| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
           tuberculosis CDC1551A]
 gi|326904207|gb|EGE51140.1| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
           tuberculosis W-148]
 gi|328458094|gb|AEB03517.1| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
           tuberculosis KZN 4207]
          Length = 188

 Score =  167 bits (423), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 49/166 (29%), Positives = 85/166 (51%), Gaps = 3/166 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G  +++   G  L  +    + +    +LA RL  + + +   +   
Sbjct: 1   MRVMGVDPGLTRCGLSLIESGRGRQLTALDVDVVRTPSDAALAQRLLAISDAVEHWLDTH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            PE  A+E+VF   +    +   QA  +  L+ A   + V  + P+ +K AV G G  DK
Sbjct: 61  HPEVVAIERVFSQLNVTTVMGTAQAGGVIALAAAKRGVDVHFHTPSEVKAAVTGNGSADK 120

Query: 124 KQIHMML-KMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
            Q+  M+ K+L  ++     DAADALA+A+CH + A +   ++A  
Sbjct: 121 AQVTAMVTKILALQAKPTPADAADALALAICHCWRAPT-IARMAEA 165


>gi|116073109|ref|ZP_01470371.1| Holliday junction resolvase RuvC [Synechococcus sp. RS9916]
 gi|116068414|gb|EAU74166.1| Holliday junction resolvase RuvC [Synechococcus sp. RS9916]
          Length = 160

 Score =  167 bits (423), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 41/144 (28%), Positives = 73/144 (50%), Gaps = 7/144 (4%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGD------NLCFVSSGTIVSCVRQSLAFRLCQLYEGLTD 58
           +RI+GIDPGL R G+G++DV             +  G I +   +S   R+ ++   L  
Sbjct: 1   MRILGIDPGLARVGYGVIDVDPSAGRGTEGQTMLDCGIIRTDPGRSEGQRMVEIAGDLRQ 60

Query: 59  VIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGV 118
           +I+ W+P+ A+VE+ F  +    T+ + QAR + I++     +P+ E+ P  IK+A+ G 
Sbjct: 61  LIRLWKPDMASVEKFFFYRS-SNTIAVVQARGVVIMTLTRFGLPIVEFPPMQIKQALTGN 119

Query: 119 GHGDKKQIHMMLKMLMPESFFKGK 142
           GH DK ++   +   +        
Sbjct: 120 GHADKDEVLESVMRELNLDSPPRP 143


>gi|299137113|ref|ZP_07030296.1| crossover junction endodeoxyribonuclease RuvC [Acidobacterium sp.
           MP5ACTX8]
 gi|298601628|gb|EFI57783.1| crossover junction endodeoxyribonuclease RuvC [Acidobacterium sp.
           MP5ACTX8]
          Length = 167

 Score =  167 bits (423), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 49/138 (35%), Positives = 82/138 (59%), Gaps = 4/138 (2%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGD----NLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           +R+ G+D G   TG+G+V+V        L ++ +G +    + S A RL Q+Y  L  ++
Sbjct: 1   MRVFGVDCGTEFTGYGVVEVDDSARTPKLRYLCAGAVKLSKKDSTAMRLAQVYSELIALM 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
           + W+PE  A+E+VF + +A + LKLGQ R +A+L+ A   + V+EYAP +IK +V+G G 
Sbjct: 61  QLWQPEMVAIEEVFFSANAKSALKLGQVRGVAMLAAANCGLTVAEYAPLSIKSSVVGYGL 120

Query: 121 GDKKQIHMMLKMLMPESF 138
             K+Q+  M+  L+    
Sbjct: 121 AAKEQVQFMVARLLELDE 138


>gi|285019191|ref|YP_003376902.1| holliday junction resolvasome, endonuclease subunit protein
           [Xanthomonas albilineans GPE PC73]
 gi|283474409|emb|CBA16910.1| putative holliday junction resolvasome, endonuclease subunit
           protein [Xanthomonas albilineans]
          Length = 207

 Score =  167 bits (423), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 66/167 (39%), Positives = 96/167 (57%), Gaps = 2/167 (1%)

Query: 4   SIRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
            +RI+GIDPG +RTG GI+DV        V    +          RL +L  GL  +I+ 
Sbjct: 35  DVRILGIDPGSQRTGVGIIDVDAAGRARHVYHAPLRLLGEGDFPQRLKRLLHGLDALIEE 94

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
           +RP+E A+E+VF+ K A A LKLG AR  AI +  L  +PV EYA   IK A++G G  +
Sbjct: 95  YRPQEVAIERVFMGKSADAALKLGHARGAAICAVVLRDLPVHEYAAKEIKLALVGKGAAE 154

Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAIAVCHAY-HANSGYYKIASQ 168
           K+Q+  M+ +++  S     DAADALA+A+ HA+  A +    + +Q
Sbjct: 155 KQQVQHMVGLMLSLSGKLQADAADALAVAITHAHVRATAQRLGVGTQ 201


>gi|297170982|gb|ADI21997.1| holliday junction resolvasome, endonuclease subunit [uncultured
           myxobacterium HF0200_01L06]
          Length = 181

 Score =  167 bits (423), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 54/136 (39%), Positives = 77/136 (56%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RIIGIDPG   TGWG+V++    +  V+ GT+      SLA RL  L+ GL DVI+   
Sbjct: 1   MRIIGIDPGSVATGWGLVEIVEGRMRHVAHGTVRPPRGGSLASRLAFLHRGLLDVIERNE 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ A VE+VFV+++  + L LG AR  A+ +     I V E +   IK+AV+G G   K 
Sbjct: 61  PDRAVVERVFVSRNPRSALVLGHARGTALAALGGFSIGVEELSAREIKQAVVGTGSASKS 120

Query: 125 QIHMMLKMLMPESFFK 140
           Q+  M+K L+      
Sbjct: 121 QVQGMVKKLLDLEAKP 136


>gi|33863407|ref|NP_894967.1| Holliday junction resolvase [Prochlorococcus marinus str. MIT 9313]
 gi|44888414|sp|Q7V6L9|RUVC_PROMM RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|33640856|emb|CAE21311.1| Crossover junction endodeoxyribonuclease RuvC [Prochlorococcus
           marinus str. MIT 9313]
          Length = 154

 Score =  167 bits (423), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 41/138 (29%), Positives = 72/138 (52%), Gaps = 1/138 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPG+ R G+G++D +      +  G I +        R+ ++   L  +I+ W+
Sbjct: 1   MRILGIDPGIARVGYGVIDTSNGQQQMLDCGIIRTNPGIDDGERMVEIASDLRQLIRRWK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ AAVE+ F  +    T+ + QAR + I++ A  R+PV E+ P  IK A+ G GH +K 
Sbjct: 61  PQLAAVEKFFFYRS-STTISVVQARGVIIMTLARFRVPVMEFPPMQIKLALAGSGHAEKD 119

Query: 125 QIHMMLKMLMPESFFKGK 142
           ++   +   +        
Sbjct: 120 EVLDAVMRELNLDQPPRP 137


>gi|149915609|ref|ZP_01904135.1| Holliday junction resolvase [Roseobacter sp. AzwK-3b]
 gi|149810501|gb|EDM70344.1| Holliday junction resolvase [Roseobacter sp. AzwK-3b]
          Length = 161

 Score =  166 bits (422), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 81/152 (53%), Positives = 103/152 (67%), Gaps = 1/152 (0%)

Query: 8   IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEE 67
           +GIDPGLR  GWG++DV G  L  V++G I       +A RL  L+  LT++ + + P+ 
Sbjct: 1   MGIDPGLRNLGWGVIDVDGSRLSHVANG-ICKSSGTDMAARLMSLHVQLTEIFRQFAPQT 59

Query: 68  AAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIH 127
           AAVEQ FVNKD   TLKLGQAR IA+L PA   + V EYAPNT+KK V+GVGH  K QI 
Sbjct: 60  AAVEQTFVNKDGAGTLKLGQARGIALLVPAQFGLAVGEYAPNTVKKTVVGVGHATKDQIA 119

Query: 128 MMLKMLMPESFFKGKDAADALAIAVCHAYHAN 159
            M+++ +P     G DAADALAIA+CHA+HA 
Sbjct: 120 HMVRVQLPGITLAGADAADALAIAICHAHHAR 151


>gi|326405392|ref|YP_004285474.1| crossover junction endodeoxyribonuclease RuvC [Acidiphilium
           multivorum AIU301]
 gi|325052254|dbj|BAJ82592.1| crossover junction endodeoxyribonuclease RuvC [Acidiphilium
           multivorum AIU301]
          Length = 169

 Score =  166 bits (422), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 74/161 (45%), Positives = 107/161 (66%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M    RIIGIDPGLR TG+GI+D  G+ L  V+ G I +    ++A RL  L   L  ++
Sbjct: 3   MPIRARIIGIDPGLRFTGFGIIDADGNRLRHVADGVIATDGAAAVAERLHTLDAALARLL 62

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             + P+ AAVE+ +VN++A ATLKLG AR +A+L+PA A I V+EY   T+K+AV+G G 
Sbjct: 63  ATYAPDHAAVEETYVNRNATATLKLGYARGVALLAPARAGIAVAEYGAKTVKRAVVGTGA 122

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSG 161
            +K Q+ +M++ L+P +     DAADALA+A+CHA+H  + 
Sbjct: 123 AEKDQVALMVRRLLPGAAITRADAADALAVAICHAHHLATA 163


>gi|119512861|ref|ZP_01631927.1| Holliday junction resolvase [Nodularia spumigena CCY9414]
 gi|119462489|gb|EAW43460.1| Holliday junction resolvase [Nodularia spumigena CCY9414]
          Length = 163

 Score =  166 bits (422), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 42/147 (28%), Positives = 77/147 (52%), Gaps = 10/147 (6%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDN-------LCFVSSGTIVSCVRQSLAFRLCQLY 53
           M K  RI+G+DPGL   G+G++  + +        +  V  G I +  +  +  RLC L+
Sbjct: 1   MEK--RILGLDPGLAILGFGLIACSQNQAKILDTSVSMVDFGVIQTSSKMEMGQRLCTLF 58

Query: 54  EGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKK 113
           + L  VI   +P+  AVE++F  +   +T+ + QAR + +L+ A  ++P  E+ P  IK+
Sbjct: 59  DDLHTVISELQPDLVAVEKLFFYRM-SSTILVAQARGVLMLALAQHKLPYVEFTPAQIKQ 117

Query: 114 AVIGVGHGDKKQIHMMLKMLMPESFFK 140
           A+ G G+ DK ++   +   +   +  
Sbjct: 118 ALTGYGNADKSEVQDAVARELDLDYIP 144


>gi|148261888|ref|YP_001236015.1| Holliday junction resolvase [Acidiphilium cryptum JF-5]
 gi|187611411|sp|A5G2L4|RUVC_ACICJ RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|146403569|gb|ABQ32096.1| crossover junction endodeoxyribonuclease RuvC [Acidiphilium cryptum
           JF-5]
          Length = 167

 Score =  166 bits (422), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 73/161 (45%), Positives = 107/161 (66%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M    RIIGIDPGLR TG+GI++  G+ L  V+ G I +    ++A RL  L   L  ++
Sbjct: 1   MPIRARIIGIDPGLRFTGFGIIEADGNRLRHVADGVIATDGAAAVAERLHTLDAALARLL 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             + P+ AAVE+ +VN++A ATLKLG AR +A+L+PA A I V+EY   T+K+AV+G G 
Sbjct: 61  ATYAPDHAAVEETYVNRNATATLKLGYARGVALLAPARAGIAVAEYGAKTVKRAVVGTGA 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSG 161
            +K Q+ +M++ L+P +     DAADALA+A+CHA+H  + 
Sbjct: 121 AEKDQVALMVRRLLPGAAITRADAADALAVAICHAHHLATA 161


>gi|317970460|ref|ZP_07971850.1| Holliday junction resolvase [Synechococcus sp. CB0205]
          Length = 157

 Score =  166 bits (422), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 46/141 (32%), Positives = 75/141 (53%), Gaps = 4/141 (2%)

Query: 5   IRIIGIDPGLRRTGWGIVDVA---GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           +RI+GIDPGL R G+G++DV    G     +  G I +   +S   R+ ++ + L  +I+
Sbjct: 1   MRILGIDPGLARVGYGVIDVEEGPGGAQTMLDCGIIRTDPGRSDGERMVEIAKDLRVLIR 60

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
           NW+P+ AAVE+ F  +    T+ + QAR + +++ A   IPV E+ P  IK A+ G GH 
Sbjct: 61  NWKPDLAAVEKFFFYRS-STTISVVQARGVLMMTLARFSIPVVEFPPMQIKLALAGHGHA 119

Query: 122 DKKQIHMMLKMLMPESFFKGK 142
           DK  +   +   +        
Sbjct: 120 DKDDVLDAVMRELNLETPPRP 140


>gi|325914721|ref|ZP_08177059.1| Holliday junction endonuclease RuvC [Xanthomonas vesicatoria ATCC
           35937]
 gi|325915803|ref|ZP_08178103.1| Holliday junction endonuclease RuvC [Xanthomonas vesicatoria ATCC
           35937]
 gi|325918024|ref|ZP_08180187.1| Holliday junction endonuclease RuvC [Xanthomonas vesicatoria ATCC
           35937]
 gi|325535757|gb|EGD07590.1| Holliday junction endonuclease RuvC [Xanthomonas vesicatoria ATCC
           35937]
 gi|325537986|gb|EGD09682.1| Holliday junction endonuclease RuvC [Xanthomonas vesicatoria ATCC
           35937]
 gi|325538998|gb|EGD10656.1| Holliday junction endonuclease RuvC [Xanthomonas vesicatoria ATCC
           35937]
          Length = 147

 Score =  166 bits (422), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 54/134 (40%), Positives = 79/134 (58%), Gaps = 1/134 (0%)

Query: 6   RIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           RI+GIDPG +RTG GI+DV  G     V    ++       A RL +L  GL ++I+ +R
Sbjct: 3   RILGIDPGSQRTGVGIIDVDEGGRSRHVHHAPLLLLGEGDFAQRLKRLLHGLGELIETYR 62

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+E A+E+VF+ K A + LKLG AR  AI +  +  +PV EYA   IK A++G G  DK 
Sbjct: 63  PDEVAIEKVFMGKSADSALKLGHARGAAICAVVMRDLPVHEYAATEIKLALVGKGGADKV 122

Query: 125 QIHMMLKMLMPESF 138
           Q+  M+ +++    
Sbjct: 123 QVQHMVGIMLNLKG 136


>gi|158338360|ref|YP_001519537.1| Holliday junction resolvase [Acaryochloris marina MBIC11017]
 gi|189046057|sp|B0C9S0|RUVC_ACAM1 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|158308601|gb|ABW30218.1| crossover junction endodeoxyribonuclease RuvC [Acaryochloris marina
           MBIC11017]
          Length = 156

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 41/142 (28%), Positives = 70/142 (49%), Gaps = 3/142 (2%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M K  +I+G+DPGL   G+G++    DNL  +  G I +  +  +  RL  +YE L  V+
Sbjct: 1   MTK--KILGLDPGLASLGFGVICTESDNLELLDFGIIQTPAKTDIGKRLQIIYEDLHQVL 58

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
              +P+  A+E++F  +     + + QAR + +L  A  ++P+ EY P  IK A+ G G 
Sbjct: 59  NTHQPDVVAIEKLFFYRMGNT-ILVAQARGVVLLVLAQHQLPIIEYTPAQIKLALTGYGA 117

Query: 121 GDKKQIHMMLKMLMPESFFKGK 142
            DK  +   +   +        
Sbjct: 118 ADKVAVQEAVARELCLDCLPRP 139


>gi|218296776|ref|ZP_03497482.1| crossover junction endodeoxyribonuclease RuvC [Thermus aquaticus
           Y51MC23]
 gi|218242865|gb|EED09399.1| crossover junction endodeoxyribonuclease RuvC [Thermus aquaticus
           Y51MC23]
          Length = 166

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 43/164 (26%), Positives = 83/164 (50%), Gaps = 4/164 (2%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGD---NLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           + ++G+DPG+   G G+V+           +    + +  ++    R+ +++    + + 
Sbjct: 1   MIVLGVDPGITHLGLGVVEAEEKGALKARLLHGEVVRTSHKEKAEARVGRIHARAKEALL 60

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
            +RPE  AVE+ F  +      K+G A    +++   A +PV  Y P  +K+A+ G GH 
Sbjct: 61  AFRPEALAVEEQFFYRQNELAYKVGWALGAVLVAAFEAGVPVYAYGPMQVKQALAGHGHA 120

Query: 122 DKKQIHMMLKM-LMPESFFKGKDAADALAIAVCHAYHANSGYYK 164
            K+++ +M++  L  +   +    ADALAIA+ HA++A  G  K
Sbjct: 121 SKEEVALMVRSALGLKETPRPSHLADALAIALTHAFYARLGAAK 164


>gi|226366280|ref|YP_002784063.1| Holliday junction resolvase [Rhodococcus opacus B4]
 gi|254767482|sp|C1B4C9|RUVC_RHOOB RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|226244770|dbj|BAH55118.1| Holliday junction endonuclease RuvC [Rhodococcus opacus B4]
          Length = 189

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 42/133 (31%), Positives = 68/133 (51%), Gaps = 1/133 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G+G+VD   G  +  V+   + +     L+ RL ++ E     I   
Sbjct: 1   MRVLGVDPGLTRCGFGVVDGGNGRTVTPVAVDVVRTPADLELSSRLLRISEAAESWIDLH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RPE  A+E+VF   +    +   QA  +  L+ A   IPV  + P+ +K AV G G  DK
Sbjct: 61  RPEVVAIERVFAQHNVRTAMGTAQAGGVVALAAARRGIPVCFHTPSEVKAAVTGSGSADK 120

Query: 124 KQIHMMLKMLMPE 136
            Q+  M+  ++  
Sbjct: 121 AQVTAMVTRILKL 133


>gi|323359951|ref|YP_004226347.1| holliday junction resolvasome, endonuclease subunit [Microbacterium
           testaceum StLB037]
 gi|323276322|dbj|BAJ76467.1| holliday junction resolvasome, endonuclease subunit [Microbacterium
           testaceum StLB037]
          Length = 203

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 44/142 (30%), Positives = 71/142 (50%), Gaps = 1/142 (0%)

Query: 2   RKSIRIIGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
            +S+R++GIDPGL R G G+VDV+ +     V  G   S     +  RL  +  G+  V+
Sbjct: 5   SRSLRVLGIDPGLTRCGIGVVDVSPNRTASLVHVGVARSAPSDPIEKRLAAIAAGIRSVL 64

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
           +   P+  AVE+VF   +  + +   QA  IA+L  A   IP + + P+ +K A+ G G 
Sbjct: 65  REHDPQVVAVERVFAQNNRHSVMGTAQASGIALLLAAEHGIPAATHTPSEVKAAITGYGS 124

Query: 121 GDKKQIHMMLKMLMPESFFKGK 142
            DK Q+  M+  ++        
Sbjct: 125 ADKLQVQTMVARVLRLDALPQP 146


>gi|254516710|ref|ZP_05128769.1| crossover junction endodeoxyribonuclease RuvC [gamma
           proteobacterium NOR5-3]
 gi|219675133|gb|EED31500.1| crossover junction endodeoxyribonuclease RuvC [gamma
           proteobacterium NOR5-3]
          Length = 172

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 50/135 (37%), Positives = 77/135 (57%), Gaps = 1/135 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG ++TG+GI+        +++SG I       L  RL  + E + ++++   P 
Sbjct: 4   ILGIDPGSQKTGFGIISTLNGKNSYITSGVIRLPKGA-LPERLRIIAESVAELVELHGPT 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
           E +VEQVF+ K A A LKLGQAR  AI+   +  + V+EY+   IK++V+G G  DK Q+
Sbjct: 63  ELSVEQVFLAKSADAALKLGQARGAAIVPCVIRGMEVAEYSARQIKQSVVGTGAADKAQV 122

Query: 127 HMMLKMLMPESFFKG 141
             M+K L+       
Sbjct: 123 QHMVKALLNLPGQPQ 137


>gi|254524664|ref|ZP_05136719.1| crossover junction endodeoxyribonuclease RuvC [Stenotrophomonas sp.
           SKA14]
 gi|219722255|gb|EED40780.1| crossover junction endodeoxyribonuclease RuvC [Stenotrophomonas sp.
           SKA14]
          Length = 173

 Score =  165 bits (420), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 62/165 (37%), Positives = 97/165 (58%), Gaps = 2/165 (1%)

Query: 6   RIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           RI+GIDPG +RTG GI+DV     +  V    +V         R+  L  GL D+ + ++
Sbjct: 3   RILGIDPGSQRTGVGIIDVDAAGRVSHVHHQPLVLLGADDFPQRMKLLVLGLADLCREYQ 62

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P E A+E+VF+ ++  + LKLGQAR  AI +  L  +PV EYA + IK AV+G G  +K+
Sbjct: 63  PNEVAIEKVFMARNPDSALKLGQARGAAISAVVLRDLPVHEYAASEIKLAVVGRGGAEKQ 122

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAY-HANSGYYKIASQ 168
           Q+  M+ +++        DAADALA+A+ HA+  A +    ++++
Sbjct: 123 QVQHMVGLMLNLKTKLQADAADALAVAITHAHVRATANRLGLSAR 167


>gi|288923987|ref|ZP_06418057.1| crossover junction endodeoxyribonuclease RuvC [Frankia sp. EUN1f]
 gi|288344665|gb|EFC79124.1| crossover junction endodeoxyribonuclease RuvC [Frankia sp. EUN1f]
          Length = 179

 Score =  165 bits (420), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 45/135 (33%), Positives = 72/135 (53%), Gaps = 1/135 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G G+VD   G     V  G + +     +A RL  + EG+ + +   
Sbjct: 1   MRVLGVDPGLTRCGIGVVDGGPGRRASLVDVGVVRTPASDEVAQRLRAVSEGVEEWLDRL 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RP+  AVE+VF   +    +   QA A+AI++ A   +P+  Y P+ +K AV G G  DK
Sbjct: 61  RPDAVAVEKVFSQANVRTVMGTAQAGAVAIVAAARRGLPIGLYTPSEVKAAVTGSGRADK 120

Query: 124 KQIHMMLKMLMPESF 138
            Q+  M+  L+  + 
Sbjct: 121 AQVGFMVTRLLDLAE 135


>gi|260654960|ref|ZP_05860448.1| crossover junction endodeoxyribonuclease RuvC [Jonquetella anthropi
           E3_33 E1]
 gi|260630275|gb|EEX48469.1| crossover junction endodeoxyribonuclease RuvC [Jonquetella anthropi
           E3_33 E1]
          Length = 152

 Score =  165 bits (420), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 43/135 (31%), Positives = 68/135 (50%), Gaps = 1/135 (0%)

Query: 17  TGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVN 76
            G+G V   G  L   S G I +   ++L  RL  LY+ L + I+   P   AVE+++  
Sbjct: 1   MGYGAVVQRGGELRAESCGCIETKPDRTLPERLKILYDQLREQIERCSPHFMAVERLYFG 60

Query: 77  KDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPE 136
            +      + QAR + +L  A   + V E  P+  K  V G G+ +K+Q+  M+++L+  
Sbjct: 61  HNRTTAEAVWQARGVVLLLAAQFGLDVVEPKPSEAKLTVCGDGNAEKRQVQEMVRILLGL 120

Query: 137 -SFFKGKDAADALAI 150
               +  DAADALAI
Sbjct: 121 KEIPRPDDAADALAI 135


>gi|209526684|ref|ZP_03275208.1| crossover junction endodeoxyribonuclease RuvC [Arthrospira maxima
           CS-328]
 gi|209492920|gb|EDZ93251.1| crossover junction endodeoxyribonuclease RuvC [Arthrospira maxima
           CS-328]
          Length = 172

 Score =  165 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 39/145 (26%), Positives = 69/145 (47%), Gaps = 8/145 (5%)

Query: 5   IRIIGIDPGLRRTGWGIVDVA-------GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLT 57
           +RI+G+DPGL   G+GI++         G     +  G I +   Q L  RL  +Y  L 
Sbjct: 3   VRIMGLDPGLATLGFGIIECHTCEEARGGSLFSVMDFGAIQTEANQPLGDRLQTIYADLH 62

Query: 58  DVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIG 117
            +++ W+P+   VE++F  +     + + QAR + +L  A   +P+ E+ P  IK+A+ G
Sbjct: 63  TLLEQWQPDLVGVEKLFFYRMGNT-IAVAQARGVLLLVLAQRHLPIFEFTPAQIKQALTG 121

Query: 118 VGHGDKKQIHMMLKMLMPESFFKGK 142
            G+  K Q+   +   +        
Sbjct: 122 YGNAKKYQVQEAVARELNLQAIPQP 146


>gi|124022603|ref|YP_001016910.1| Holliday junction resolvase [Prochlorococcus marinus str. MIT 9303]
 gi|166233282|sp|A2C835|RUVC_PROM3 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|123962889|gb|ABM77645.1| Crossover junction endodeoxyribonuclease RuvC [Prochlorococcus
           marinus str. MIT 9303]
          Length = 154

 Score =  165 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 41/138 (29%), Positives = 72/138 (52%), Gaps = 1/138 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGL R G+G++D +      +  G I +        R+ ++   L  +I+ W+
Sbjct: 1   MRILGIDPGLARVGYGVIDTSNGQQQMLDCGIIRTNPGIDDGVRMVEIASDLRQLIRRWK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+ AAVE+ F  +    T+ + QAR + I++ A  R+P+ E+ P  IK A+ G GH +K 
Sbjct: 61  PQLAAVEKFFFYRS-STTISVVQARGVIIMTLARFRVPMVEFPPMQIKLALAGSGHAEKD 119

Query: 125 QIHMMLKMLMPESFFKGK 142
           ++   +   +        
Sbjct: 120 EVLDAVMRELNLDQPPRP 137


>gi|190575570|ref|YP_001973415.1| Holliday junction resolvase [Stenotrophomonas maltophilia K279a]
 gi|229558764|sp|B2FRN7|RUVC_STRMK RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|190013492|emb|CAQ47127.1| putative crossover junction endodeoxyribonuclease [Stenotrophomonas
           maltophilia K279a]
          Length = 173

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 62/165 (37%), Positives = 98/165 (59%), Gaps = 2/165 (1%)

Query: 6   RIIGIDPGLRRTGWGIVDVAG-DNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           RI+GIDPG +RTG GI+DV     + +V    +V         R+  L  GL D+ + + 
Sbjct: 3   RILGIDPGSQRTGVGIIDVDATGRVSYVHHQPLVLLGADDFPQRMKLLVLGLADLCREYE 62

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+E A+E+VF+ ++  + LKLGQAR  AI +  L  +PV EYA + IK AV+G G  +K+
Sbjct: 63  PQEVAIERVFMARNPDSALKLGQARGAAISAVVLRDLPVHEYAASEIKLAVVGRGGAEKQ 122

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAY-HANSGYYKIASQ 168
           Q+  M+ +++        DAADALA+A+ HA+  A +    ++++
Sbjct: 123 QVQHMVGLMLNLKIKLQADAADALAVAITHAHVRATANRLGLSAR 167


>gi|315444740|ref|YP_004077619.1| Holliday junction endonuclease RuvC [Mycobacterium sp. Spyr1]
 gi|315263043|gb|ADT99784.1| Holliday junction endonuclease RuvC [Mycobacterium sp. Spyr1]
          Length = 192

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 48/156 (30%), Positives = 81/156 (51%), Gaps = 2/156 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G  +++   G  +  +    + +     LA RL  +   +   +   
Sbjct: 1   MRVMGVDPGLTRCGLSVIESGRGRQVIALDVDVVRTPSDHPLAHRLLAISNAVEHWLDTH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RP+  A+E+VF N++A   +   QA  +  L+ A   I V  + P+ +K AV G G  DK
Sbjct: 61  RPDVIAIERVFSNQNANTAMGTAQAGGVVALAAARRDIDVHFHTPSEVKAAVTGNGRADK 120

Query: 124 KQIHMMLKMLM-PESFFKGKDAADALAIAVCHAYHA 158
            Q+  M+  ++  +      DAADALA+A+CH + A
Sbjct: 121 AQVTEMVTRILALQQKPTPADAADALALAICHCWRA 156


>gi|88856267|ref|ZP_01130927.1| Holliday junction resolvase [marine actinobacterium PHSC20C1]
 gi|88814586|gb|EAR24448.1| Holliday junction resolvase [marine actinobacterium PHSC20C1]
          Length = 201

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 44/136 (32%), Positives = 71/136 (52%), Gaps = 1/136 (0%)

Query: 4   SIRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
           ++R+IGIDPGL R G G+VDVA       V  G + +    +L  RL  + EG+  VI  
Sbjct: 2   ALRVIGIDPGLTRCGIGVVDVAADRRATLVHVGVVRTPPEMALEERLRHIGEGIDAVIAE 61

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
           + P + A+E+VF   +    +   QA  +A+   A   I V+ + P  +K A+ G G  +
Sbjct: 62  YAPHQLALERVFAQLNVSTVMGTAQASGVAMYVAAQRGIAVTMHTPTEVKLAITGYGGAE 121

Query: 123 KKQIHMMLKMLMPESF 138
           KKQ+  M+  ++  + 
Sbjct: 122 KKQVGAMVARVLGLAE 137


>gi|260903853|ref|ZP_05912175.1| crossover junction endodeoxyribonuclease RuvC [Brevibacterium
           linens BL2]
          Length = 198

 Score =  165 bits (418), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 39/134 (29%), Positives = 65/134 (48%), Gaps = 1/134 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +RI+G+DPGL R G G++D         VS   + +    S+  RL  L E     +  +
Sbjct: 1   MRILGVDPGLTRCGLGVIDSLPARKAKMVSVDVLRTPSTDSVDLRLGALAEAFDSWLDTY 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RP+  A+E+VF   D    +   Q   + +   A   +PV+ + P+ +K A+ G G  DK
Sbjct: 61  RPDVVAIERVFARNDVSTIMGTAQVSGLTMGLAARRGLPVAMHTPSEVKAAITGSGRADK 120

Query: 124 KQIHMMLKMLMPES 137
           KQ+  M+  ++   
Sbjct: 121 KQVTNMVTRILELE 134


>gi|320536681|ref|ZP_08036694.1| crossover junction endodeoxyribonuclease RuvC [Treponema phagedenis
           F0421]
 gi|320146472|gb|EFW38075.1| crossover junction endodeoxyribonuclease RuvC [Treponema phagedenis
           F0421]
          Length = 161

 Score =  165 bits (418), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 47/142 (33%), Positives = 79/142 (55%), Gaps = 1/142 (0%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           MR+ I I+GIDPGL   G+G+V  +G  L  ++ G I +    +   RL  +++ +  V+
Sbjct: 1   MREKI-IVGIDPGLASAGYGVVAQSGSRLRCLTYGVIQTKPENTQGERLAIIFDSIGGVL 59

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
           K + P+ A +E ++  K+    L + +AR + +L+ A  +IPV EYAPN IKK V G+  
Sbjct: 60  KEFTPDAAGIETLYFAKNVTNGLSVAEARGVILLAFAQWQIPVREYAPNAIKKTVTGIAQ 119

Query: 121 GDKKQIHMMLKMLMPESFFKGK 142
            +K Q+   +K+L+        
Sbjct: 120 ANKHQVQESVKILLGLKTAPTP 141


>gi|194366899|ref|YP_002029509.1| Holliday junction resolvase [Stenotrophomonas maltophilia R551-3]
 gi|226698767|sp|B4ST35|RUVC_STRM5 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|194349703|gb|ACF52826.1| crossover junction endodeoxyribonuclease RuvC [Stenotrophomonas
           maltophilia R551-3]
          Length = 173

 Score =  165 bits (418), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 62/165 (37%), Positives = 97/165 (58%), Gaps = 2/165 (1%)

Query: 6   RIIGIDPGLRRTGWGIVDVAG-DNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           RI+GIDPG +RTG GI+DV     +  V    +V         R+  L  GL D+ + + 
Sbjct: 3   RILGIDPGSQRTGVGIIDVDATGRVSHVHHQPLVLLGADDFPQRMKLLVLGLADLCREYE 62

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+E A+E+VF+ ++  + LKLGQAR  AI +  L  +PV EYA + IK AV+G G  +K+
Sbjct: 63  PQEVAIERVFMARNPDSALKLGQARGAAISAVVLRDLPVHEYAASEIKLAVVGRGGAEKQ 122

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAY-HANSGYYKIASQ 168
           Q+  M+ +++        DAADALA+A+ HA+  A +    ++++
Sbjct: 123 QVQHMVGLMLNLKTKLQADAADALAVAITHAHVRATANRLGLSAR 167


>gi|158316902|ref|YP_001509410.1| Holliday junction resolvase [Frankia sp. EAN1pec]
 gi|238686854|sp|A8KZE8|RUVC_FRASN RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|158112307|gb|ABW14504.1| crossover junction endodeoxyribonuclease RuvC [Frankia sp. EAN1pec]
          Length = 178

 Score =  165 bits (418), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 45/135 (33%), Positives = 71/135 (52%), Gaps = 1/135 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G G+VD   G     V  G + +     +A RL  + EG+ + +   
Sbjct: 1   MRVLGVDPGLTRCGLGVVDGGPGRRASLVEVGVVRTPASDEVADRLRAVSEGVDEWLDRV 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RP+  AVE+VF   +    +   QA A+AI++ A   +P+  Y P+ +K AV G G  DK
Sbjct: 61  RPDAVAVEKVFSQANVRTVMGTAQAGAVAIVAAARRGLPIGLYTPSEVKAAVTGSGRADK 120

Query: 124 KQIHMMLKMLMPESF 138
            Q+  M+  L+    
Sbjct: 121 AQVGFMVTKLLDLPE 135


>gi|297155807|gb|ADI05519.1| Holliday junction resolvase [Streptomyces bingchenggensis BCW-1]
          Length = 177

 Score =  165 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 57/156 (36%), Positives = 88/156 (56%), Gaps = 2/156 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G G+VD      L  +  G I +     +  RL ++  GL + ++  
Sbjct: 1   MRVLGVDPGLTRCGVGVVDGVAGRPLRMIGVGVIRTPADAPIGDRLVEIERGLEEWLEAH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RPE  AVE+VF   +    +   QA A+A+L  A   +PV+ + P+ +K AV G G  DK
Sbjct: 61  RPEVVAVERVFSQHNVQTVMGTAQASAVAMLCAARRGLPVALHTPSEVKAAVTGSGRADK 120

Query: 124 KQIHMMLKMLM-PESFFKGKDAADALAIAVCHAYHA 158
            Q+  M+  L+  ++  K  DAADALA+A+CH + A
Sbjct: 121 AQVGSMVTRLLRLDAPPKPADAADALALAICHIWRA 156


>gi|154508895|ref|ZP_02044537.1| hypothetical protein ACTODO_01406 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798529|gb|EDN80949.1| hypothetical protein ACTODO_01406 [Actinomyces odontolyticus ATCC
           17982]
          Length = 209

 Score =  164 bits (417), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 1/133 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++GIDPGL R G G+VDV        V  G   +    +  FRL  + + +  VI+ +
Sbjct: 1   MRVMGIDPGLTRCGLGVVDVDASRRASLVYVGVARTDKDLATHFRLRTIADAIDSVIERY 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            PE AA+E+VF   +  +     Q    A+     A +P++ + P+ +K AV G G+ DK
Sbjct: 61  EPEVAAIERVFAQDNLQSVTTTMQVMGAAMTCVGRAGLPMAVHTPSEVKSAVSGNGNADK 120

Query: 124 KQIHMMLKMLMPE 136
            Q+  M+  ++  
Sbjct: 121 AQVQAMVARILGL 133


>gi|148269488|ref|YP_001243948.1| Holliday junction resolvase [Thermotoga petrophila RKU-1]
 gi|170288162|ref|YP_001738400.1| crossover junction endodeoxyribonuclease RuvC [Thermotoga sp. RQ2]
 gi|281411794|ref|YP_003345873.1| crossover junction endodeoxyribonuclease RuvC [Thermotoga
           naphthophila RKU-10]
 gi|166233308|sp|A5IJJ9|RUVC_THEP1 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|238688812|sp|B1L8R9|RUVC_THESQ RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|147735032|gb|ABQ46372.1| Holliday junction endonuclease RuvC [Thermotoga petrophila RKU-1]
 gi|170175665|gb|ACB08717.1| crossover junction endodeoxyribonuclease RuvC [Thermotoga sp. RQ2]
 gi|281372897|gb|ADA66459.1| crossover junction endodeoxyribonuclease RuvC [Thermotoga
           naphthophila RKU-10]
          Length = 165

 Score =  164 bits (417), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 48/138 (34%), Positives = 78/138 (56%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+G+DPG    G GI++V+G+ +  V  GTI +        RL ++YE    V++ + 
Sbjct: 1   MRILGVDPGYGIVGIGIIEVSGNRISHVFHGTIETPKDLPAEKRLKRIYEEFLKVLERFS 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+E A+E++F  K+    + +G+AR + +L+ A   IPV EYAPN +K ++ G G   KK
Sbjct: 61  PDECAMEKLFFVKNVTTAIGVGEARGVLLLALAEKNIPVFEYAPNEVKVSLSGYGRASKK 120

Query: 125 QIHMMLKMLMPESFFKGK 142
           QI   +K  +  S     
Sbjct: 121 QIQENIKRFLNLSEIPRP 138


>gi|269958336|ref|YP_003328123.1| Holliday (crossover) junction endodeoxyribonuclease [Anaplasma
           centrale str. Israel]
 gi|269848165|gb|ACZ48809.1| Holliday (crossover) junction endodeoxyribonuclease [Anaplasma
           centrale str. Israel]
          Length = 162

 Score =  164 bits (417), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 52/158 (32%), Positives = 85/158 (53%), Gaps = 3/158 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +  IGIDPGL  TGWG+V      ++C + SG I +      + +L ++Y  L  V+  +
Sbjct: 1   MITIGIDPGLEFTGWGVVSSLDSHSICLLDSGVISTRGISKESEKLYKIYVSLLSVLGMY 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           R EEA++E+VFVN +  +++ L  ARA + +S     I + EY+   IKK + G G   K
Sbjct: 61  RIEEASIEKVFVNSNPRSSMSLCYARAASTISVMSKGINIYEYSSTAIKKCITGNGMAPK 120

Query: 124 KQIHMMLKMLMPE--SFFKGKDAADALAIAVCHAYHAN 159
            Q+  M++  +           ++DA+A A+CH Y+  
Sbjct: 121 DQVLFMVRNSLGIGSDIKINNHSSDAIAAALCHIYNTR 158


>gi|293192651|ref|ZP_06609605.1| crossover junction endodeoxyribonuclease RuvC [Actinomyces
           odontolyticus F0309]
 gi|292820158|gb|EFF79155.1| crossover junction endodeoxyribonuclease RuvC [Actinomyces
           odontolyticus F0309]
          Length = 209

 Score =  164 bits (417), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 40/133 (30%), Positives = 67/133 (50%), Gaps = 1/133 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++GIDPGL R G G+VDV        V  G   +    +  FRL  + + +  VI+ +
Sbjct: 1   MRVMGIDPGLTRCGLGVVDVDASRRASLVYVGVARTDKDLATHFRLRAIADAIDSVIERY 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            PE  A+E+VF   +  +     Q    A+     A +P++ + P+ +K AV G G+ DK
Sbjct: 61  EPEVVAIERVFAQDNLQSVTTTMQVMGAAMTCVGRAGLPMAVHTPSEVKSAVSGNGNADK 120

Query: 124 KQIHMMLKMLMPE 136
            Q+  M+  ++  
Sbjct: 121 AQVQAMVARILGL 133


>gi|304389422|ref|ZP_07371385.1| crossover junction endoribonuclease subunit C [Mobiluncus curtisii
           subsp. curtisii ATCC 35241]
 gi|304327232|gb|EFL94467.1| crossover junction endoribonuclease subunit C [Mobiluncus curtisii
           subsp. curtisii ATCC 35241]
          Length = 213

 Score =  164 bits (417), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 38/137 (27%), Positives = 69/137 (50%), Gaps = 1/137 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++GIDPG+ R G G+VD         V    + S    +  FRL ++ +G+ + I  +
Sbjct: 1   MRVLGIDPGITRCGIGVVDFDTSRRCTLVYVDVVRSDPNTATQFRLLKISQGVAEAINRF 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +P+  A+E+ F  ++  +     QA  IA++  A   +PV+ + P+ +K AV G G   K
Sbjct: 61  QPDIVALERPFAKENRQSVATTMQAMGIAMVEAARQGLPVAVHTPSEVKAAVSGNGSASK 120

Query: 124 KQIHMMLKMLMPESFFK 140
            Q+  M+  ++      
Sbjct: 121 AQVQAMVARILRLDKPP 137


>gi|298346873|ref|YP_003719560.1| crossover junction endodeoxyribonuclease [Mobiluncus curtisii ATCC
           43063]
 gi|298236934|gb|ADI68066.1| crossover junction endodeoxyribonuclease [Mobiluncus curtisii ATCC
           43063]
          Length = 213

 Score =  164 bits (416), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 38/137 (27%), Positives = 69/137 (50%), Gaps = 1/137 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++GIDPG+ R G G+VD         V    + S    +  FRL ++ +G+ + I  +
Sbjct: 1   MRVLGIDPGITRCGIGVVDFDTSRRCTLVYVDVVRSDPNTATQFRLLKISQGVAEAINRF 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +P+  A+E+ F  ++  +     QA  IA++  A   +PV+ + P+ +K AV G G   K
Sbjct: 61  QPDIVALERPFAKENRQSVATTMQAMGIAMVEAARQGLPVAVHTPSEVKAAVSGNGSASK 120

Query: 124 KQIHMMLKMLMPESFFK 140
            Q+  M+  ++      
Sbjct: 121 AQVQAMVARILRLDKPP 137


>gi|300787174|ref|YP_003767465.1| crossover junction endodeoxyribonuclease RuvC [Amycolatopsis
           mediterranei U32]
 gi|299796688|gb|ADJ47063.1| crossover junction endodeoxyribonuclease RuvC [Amycolatopsis
           mediterranei U32]
          Length = 196

 Score =  164 bits (416), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 42/138 (30%), Positives = 70/138 (50%), Gaps = 3/138 (2%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDV 59
           MR  +R++G+DPGL R G G+VD   G  +  V+   + +     LA RL ++ + +   
Sbjct: 1   MR--VRVLGVDPGLTRCGLGVVDGGKGRAVRCVAVDVVRTPADADLAHRLLEISDEVERW 58

Query: 60  IKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVG 119
           +  ++P   AVE+VF   +    +   QA  +  L+ A   +PV  + P+ +K AV G G
Sbjct: 59  MDKYKPAAVAVERVFAQHNVRTAMGTAQAGGVVALAAARRGLPVVFHTPSEVKAAVSGSG 118

Query: 120 HGDKKQIHMMLKMLMPES 137
             DK Q+  M+  L+   
Sbjct: 119 RADKAQVTAMVMRLLNLE 136


>gi|325971234|ref|YP_004247425.1| Crossover junction endodeoxyribonuclease ruvC [Spirochaeta sp.
           Buddy]
 gi|324026472|gb|ADY13231.1| Crossover junction endodeoxyribonuclease ruvC [Spirochaeta sp.
           Buddy]
          Length = 163

 Score =  164 bits (416), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 45/143 (31%), Positives = 73/143 (51%), Gaps = 1/143 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPG  +TGWG+V+  G +   VS G I +   Q    R+  + + +  +    +
Sbjct: 1   MRILGIDPGYAQTGWGVVESDGQHNRPVSFGVIKTSPTQPDCERIHFIAKSIGALALENK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
                +E +F  K+  + + + +     I   AL  IPV  Y+P TIK AV G G  +K 
Sbjct: 61  VTICGMEDIFFTKNVSSAIPVAKVIGACIHQLALLEIPVRLYSPPTIKSAVTGYGGAEKH 120

Query: 125 QIHMMLKMLMP-ESFFKGKDAAD 146
           Q+  M+++L+  E   K   A+D
Sbjct: 121 QVQEMVRILLGFEKIPKPDHASD 143


>gi|118617339|ref|YP_905671.1| Holliday junction resolvase [Mycobacterium ulcerans Agy99]
 gi|183982123|ref|YP_001850414.1| crossover junction endodeoxyribonuclease RuvC [Mycobacterium
           marinum M]
 gi|166233272|sp|A0PPD1|RUVC_MYCUA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|238690932|sp|B2HN61|RUVC_MYCMM RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|118569449|gb|ABL04200.1| crossover junction endodeoxyribonuclease RuvC [Mycobacterium
           ulcerans Agy99]
 gi|183175449|gb|ACC40559.1| crossover junction endodeoxyribonuclease RuvC [Mycobacterium
           marinum M]
          Length = 184

 Score =  163 bits (415), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 46/156 (29%), Positives = 81/156 (51%), Gaps = 2/156 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G  +++   G  L  +    + +     L+ RL  + E +   ++  
Sbjct: 1   MRVMGVDPGLTRCGLSLIESGQGRQLTALDVDVVRTPSDAPLSSRLLAINEAVEHWLETH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RP+  A+E+VF  ++    +   QA  +  L+ A   + V  + P+ +K AV G G  DK
Sbjct: 61  RPDVVAIERVFSQQNVKTVMGTAQAGGVVALAAAKRGVEVHFHTPSEVKAAVTGNGTADK 120

Query: 124 KQIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHA 158
            Q+  M+  ++   +     DAADALA+A+CH + A
Sbjct: 121 AQVTAMVTRILALQTKPTPADAADALALAICHCWRA 156


>gi|295112191|emb|CBL28941.1| crossover junction endodeoxyribonuclease RuvC [Synergistetes
           bacterium SGP1]
          Length = 171

 Score =  163 bits (415), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 42/138 (30%), Positives = 67/138 (48%), Gaps = 1/138 (0%)

Query: 6   RI-IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           R+ +G+DPGL R G+G V  +G     +  G I +  + S   R+ Q+Y  L + ++   
Sbjct: 7   RVCLGVDPGLARVGYGAVARSGSRFRALEYGCIETSPKLSFMQRILQIYAKLGEQLERCA 66

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P   +VE++F   +A     + QAR + +L  A   + V E  PN IK AV G G  DK+
Sbjct: 67  PAFMSVERLFFGHNATTAEFVWQARGVVMLLAAQRGLAVVEPKPNQIKLAVCGTGGADKR 126

Query: 125 QIHMMLKMLMPESFFKGK 142
           Q+  M +  +        
Sbjct: 127 QVQRMTQRFLGLDRVPSP 144


>gi|72382538|ref|YP_291893.1| Holliday junction resolvase [Prochlorococcus marinus str. NATL2A]
 gi|110282921|sp|Q46JY8|RUVC_PROMT RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|72002388|gb|AAZ58190.1| Holliday junction endonuclease RuvC [Prochlorococcus marinus str.
           NATL2A]
          Length = 154

 Score =  163 bits (414), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 45/136 (33%), Positives = 70/136 (51%), Gaps = 1/136 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RIIGIDPGL R G+GI+D        +  G I +   Q    RL ++   L+ +IK W 
Sbjct: 1   MRIIGIDPGLARVGYGIIDEIEGKKIMIDCGIIETKSTQKEEERLVEISNDLSSIIKKWN 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P  AAVE+ F  +    T+ + QAR + +++    ++P+ E+ P  IK AV G GH DK 
Sbjct: 61  PNSAAVEKFFFYRS-STTISVVQARGVIMMTLGKYKLPIQEFPPMQIKLAVTGYGHSDKN 119

Query: 125 QIHMMLKMLMPESFFK 140
            +   +   +  +   
Sbjct: 120 DVLNSVMHELNVTSPP 135


>gi|87302129|ref|ZP_01084954.1| Holliday junction resolvase RuvC [Synechococcus sp. WH 5701]
 gi|87283054|gb|EAQ75010.1| Holliday junction resolvase RuvC [Synechococcus sp. WH 5701]
          Length = 153

 Score =  163 bits (414), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 42/138 (30%), Positives = 72/138 (52%), Gaps = 2/138 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGL R G+G+++  G     +  G I +        RL ++   L  +++ W 
Sbjct: 1   MRILGIDPGLARVGYGLIE-TGPPQRLLDCGMIRTEAGTPEGERLVEIARDLRWLVRRWS 59

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           PE A+VE+ F  +    T+ + QAR + +++ A  R+PV E+ P  IK+A+ G GH DK 
Sbjct: 60  PELASVEKFFFYRS-STTISVVQARGVVMMTLARLRVPVVEFPPMQIKQALTGSGHADKN 118

Query: 125 QIHMMLKMLMPESFFKGK 142
            +   +   +  +     
Sbjct: 119 DVLDAVMRELDLAHPPRP 136


>gi|326773259|ref|ZP_08232542.1| crossover junction endodeoxyribonuclease RuvC [Actinomyces viscosus
           C505]
 gi|326636489|gb|EGE37392.1| crossover junction endodeoxyribonuclease RuvC [Actinomyces viscosus
           C505]
          Length = 223

 Score =  163 bits (414), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 51/156 (32%), Positives = 78/156 (50%), Gaps = 2/156 (1%)

Query: 6   RIIGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           R++GIDPGL R G G VDV     +  V  G + +   QS   RL  + E + D I    
Sbjct: 19  RVLGIDPGLTRCGLGCVDVDPRRQVRLVEVGVVRTPPSQSPELRLLTITEAIEDWIARLG 78

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P   ++E+VF   +  + + + Q    A+ + A A + V+++ P+  K AV G G  DK 
Sbjct: 79  PSVVSIERVFAQDNLRSVIGVAQVMGTAMATAARAGLEVAQHTPSEAKAAVTGSGTADKA 138

Query: 125 QIHMMLKMLMPESFFK-GKDAADALAIAVCHAYHAN 159
           Q+  M+  ++         DAADALA A+CH +   
Sbjct: 139 QVQAMVTRILGLDAPPRPADAADALAQAICHGWRGG 174


>gi|290961820|ref|YP_003493002.1| crossover junction endodeoxyribonuclease [Streptomyces scabiei
           87.22]
 gi|260651346|emb|CBG74468.1| crossover junction endodeoxyribonuclease [Streptomyces scabiei
           87.22]
          Length = 176

 Score =  163 bits (414), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 56/156 (35%), Positives = 86/156 (55%), Gaps = 2/156 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G G+V+      L  +  G + +     L  RL  + +G+   +   
Sbjct: 1   MRVLGVDPGLTRCGVGVVEGVAGRPLTMLGVGVVRTPPDAELGRRLVAIEQGIEQWLDEH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RPE  AVE+VF   +    +   QA A+A+L  A   IPV+ + P+ +K AV G G  DK
Sbjct: 61  RPECVAVERVFSQHNVRTVMGTAQASAVAMLCAARRGIPVALHTPSEVKAAVTGSGRADK 120

Query: 124 KQIHMMLKMLM-PESFFKGKDAADALAIAVCHAYHA 158
            Q+  M+  L+  ++  K  DAADALA+A+CH + A
Sbjct: 121 AQVGAMVTRLLRLDAPPKPADAADALALAICHIWRA 156


>gi|296117789|ref|ZP_06836372.1| crossover junction endodeoxyribonuclease RuvC [Corynebacterium
           ammoniagenes DSM 20306]
 gi|295969020|gb|EFG82262.1| crossover junction endodeoxyribonuclease RuvC [Corynebacterium
           ammoniagenes DSM 20306]
          Length = 180

 Score =  163 bits (414), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 39/132 (29%), Positives = 69/132 (52%), Gaps = 1/132 (0%)

Query: 8   IGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           +GIDPGL R G  +V    G  +  +S G   +   + LA RL +L   + + + +++P+
Sbjct: 1   MGIDPGLTRCGLSVVQAGRGRAVIPISVGVARTPPEEDLAKRLLRLSTAVEEWMDDYKPD 60

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+E++F   +    L       + +L+ A   IPV  Y P+ +KKA+ G G  DKKQ+
Sbjct: 61  VVAIERLFERGNVSTVLHTAHGVGVLMLAAAKRDIPVYMYTPSEVKKAISGNGRADKKQM 120

Query: 127 HMMLKMLMPESF 138
            +M+  ++  + 
Sbjct: 121 TVMITRILGLTE 132


>gi|325284122|ref|YP_004256663.1| Crossover junction endodeoxyribonuclease ruvC [Deinococcus
           proteolyticus MRP]
 gi|324315931|gb|ADY27046.1| Crossover junction endodeoxyribonuclease ruvC [Deinococcus
           proteolyticus MRP]
          Length = 178

 Score =  163 bits (414), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 37/139 (26%), Positives = 68/139 (48%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++G+DPGL   G G+VD        +    + +   Q +  RL  L+  ++ VI  ++
Sbjct: 1   MRVLGVDPGLANLGLGVVDGDVRRAVCLHQECVTTPSSQEMGQRLLTLHRHVSAVIDEFQ 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  A+E   + + A    K+GQA  +  L+     +PV  Y P  +KKA++G G  +K+
Sbjct: 61  PDAVALEDQILRRQADVAFKVGQAYGVVQLTCGQRGLPVYGYGPMQVKKALVGTGRAEKE 120

Query: 125 QIHMMLKMLMPESFFKGKD 143
           Q+  M++  +         
Sbjct: 121 QVIYMVRANLGLRALTNNH 139


>gi|315656669|ref|ZP_07909556.1| crossover junction endoribonuclease subunit C [Mobiluncus curtisii
           subsp. holmesii ATCC 35242]
 gi|315492624|gb|EFU82228.1| crossover junction endoribonuclease subunit C [Mobiluncus curtisii
           subsp. holmesii ATCC 35242]
          Length = 213

 Score =  163 bits (414), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 38/137 (27%), Positives = 69/137 (50%), Gaps = 1/137 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++GIDPG+ R G G+VD         V    + S    +  FRL ++ +G+ + I  +
Sbjct: 1   MRVLGIDPGITRCGIGVVDFDTSRRCTLVYVDVVRSDPNTATQFRLLKISQGVAEAINRF 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +P+  A+E+ F  ++  +     QA  IA++  A   +PV+ + P+ +K AV G G   K
Sbjct: 61  QPDIVALERPFAKENRQSVATTMQAMGIAMVEAARQGLPVAVHTPSEVKAAVSGNGSAAK 120

Query: 124 KQIHMMLKMLMPESFFK 140
            Q+  M+  ++      
Sbjct: 121 AQVQAMVARILRLDKPP 137


>gi|315655418|ref|ZP_07908318.1| crossover junction endoribonuclease subunit C [Mobiluncus curtisii
           ATCC 51333]
 gi|315490358|gb|EFU79983.1| crossover junction endoribonuclease subunit C [Mobiluncus curtisii
           ATCC 51333]
          Length = 213

 Score =  163 bits (413), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 38/137 (27%), Positives = 69/137 (50%), Gaps = 1/137 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++GIDPG+ R G G+VD         V    + S    +  FRL ++ +G+ + I  +
Sbjct: 1   MRVLGIDPGITRCGIGVVDFDASRRCTLVYVDVVRSDPNTATQFRLLKISQGVAEAINRF 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +P+  A+E+ F  ++  +     QA  IA++  A   +PV+ + P+ +K AV G G   K
Sbjct: 61  QPDIVALERPFAKENRQSVATTMQAMGIAMVEAARQGLPVAVHTPSEVKAAVSGNGSAAK 120

Query: 124 KQIHMMLKMLMPESFFK 140
            Q+  M+  ++      
Sbjct: 121 AQVQAMVARILRLDKPP 137


>gi|75906340|ref|YP_320636.1| Holliday junction resolvase [Anabaena variabilis ATCC 29413]
 gi|123758952|sp|Q3MGZ5|RUVC_ANAVT RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|75700065|gb|ABA19741.1| Holliday junction endonuclease RuvC [Anabaena variabilis ATCC
           29413]
          Length = 163

 Score =  163 bits (413), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 40/149 (26%), Positives = 73/149 (48%), Gaps = 10/149 (6%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIV-------DVAGDNLCFVSSGTIVSCVRQSLAFRLCQLY 53
           M K  RI+G+DPGL   G+G +        +    +  +  G I +     +  RLC L+
Sbjct: 1   MEK--RILGLDPGLAILGFGAITCTPGLTQLQSTKVNILDFGVIKTSADIEIGQRLCTLF 58

Query: 54  EGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKK 113
           + L  VI N +P+  A+E++F  +   +T+ + QAR + +L+ A   +P  E+ P  +K 
Sbjct: 59  DDLHTVIDNLQPDVVAIEKLFFYRM-SSTIVVAQARGVVMLALAQHHLPYVEFTPAQVKL 117

Query: 114 AVIGVGHGDKKQIHMMLKMLMPESFFKGK 142
           A+ G G+ DK ++   +   +  +     
Sbjct: 118 ALTGYGNADKSEVQEAVARELDLAEIPQP 146


>gi|152967000|ref|YP_001362784.1| Holliday junction resolvase [Kineococcus radiotolerans SRS30216]
 gi|151361517|gb|ABS04520.1| crossover junction endodeoxyribonuclease RuvC [Kineococcus
           radiotolerans SRS30216]
          Length = 207

 Score =  163 bits (413), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 37/137 (27%), Positives = 69/137 (50%), Gaps = 2/137 (1%)

Query: 8   IGIDPGLRRTGWGIVDVA--GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           + +DPGL R G G++D    G     V+ G + +     +  RL  + EGL + +   RP
Sbjct: 2   LAVDPGLTRCGIGVIDSVRVGRRAELVAVGVVRTPATDPVEARLLAISEGLEEWLDAHRP 61

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
           +  AVE+VF   +  + +   QA  + +++ A   +PV+ + P+ +K AV G G  +K+Q
Sbjct: 62  DVVAVERVFAQSNVRSVMGTAQAAGLVLVAAARRGLPVAMHTPSEVKAAVTGSGRAEKEQ 121

Query: 126 IHMMLKMLMPESFFKGK 142
           + +M+  ++        
Sbjct: 122 VTVMVTRILGLDAPPRP 138


>gi|186685412|ref|YP_001868608.1| Holliday junction resolvase [Nostoc punctiforme PCC 73102]
 gi|226698760|sp|B2J4H5|RUVC_NOSP7 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|186467864|gb|ACC83665.1| crossover junction endodeoxyribonuclease RuvC [Nostoc punctiforme
           PCC 73102]
          Length = 163

 Score =  163 bits (413), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 41/147 (27%), Positives = 73/147 (49%), Gaps = 10/147 (6%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIV-------DVAGDNLCFVSSGTIVSCVRQSLAFRLCQLY 53
           M K  RI+G+DPGL   G+G++        V    +  +  G I +     +  RLC L+
Sbjct: 1   MEK--RILGLDPGLATLGFGVITCTQIANKVPETTVNMLDFGVIKTSADVEMGLRLCTLF 58

Query: 54  EGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKK 113
           + L  V++ ++P+  A+E++F  +   +T+ + QAR + IL     R+P  E+ P  IK+
Sbjct: 59  DDLHTVMEEFQPDLVAIEKLFFYRM-SSTILVAQARGVLILVLGQRRLPYVEFTPAQIKQ 117

Query: 114 AVIGVGHGDKKQIHMMLKMLMPESFFK 140
           A+ G G+ DK  +   +   +      
Sbjct: 118 ALTGYGNADKLDVQEAVARELDLDEIP 144


>gi|124026239|ref|YP_001015355.1| crossover junction endodeoxyribonuclease RuvC [Prochlorococcus
           marinus str. NATL1A]
 gi|166233281|sp|A2C3N0|RUVC_PROM1 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|123961307|gb|ABM76090.1| Crossover junction endodeoxyribonuclease RuvC [Prochlorococcus
           marinus str. NATL1A]
          Length = 154

 Score =  163 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 44/136 (32%), Positives = 71/136 (52%), Gaps = 1/136 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RIIGIDPGL R G+GI+D        +  G I +   +    RL ++   L+ +IK W 
Sbjct: 1   MRIIGIDPGLARVGYGIIDEIEGKKIMIDCGIIETKSTKKEEERLVEISNDLSSIIKKWN 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P  AAVE+ F  +    T+ + QAR + +++    ++P+ E+ P  IK AV G GH DK 
Sbjct: 61  PNSAAVEKFFFYRS-STTISVVQARGVIMMTLGKYKLPIQEFPPMQIKLAVTGYGHSDKN 119

Query: 125 QIHMMLKMLMPESFFK 140
           ++   +   +  +   
Sbjct: 120 EVLNCVMHELSITSPP 135


>gi|15827158|ref|NP_301421.1| Holliday junction resolvase [Mycobacterium leprae TN]
 gi|221229636|ref|YP_002503052.1| Holliday junction resolvase [Mycobacterium leprae Br4923]
 gi|730697|sp|P40834|RUVC_MYCLE RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|466822|gb|AAA17097.1| ruvC [Mycobacterium leprae]
 gi|13092706|emb|CAC29989.1| crossover junction endodeoxyribonuclease [Mycobacterium leprae]
 gi|219932743|emb|CAR70574.1| crossover junction endodeoxyribonuclease [Mycobacterium leprae
           Br4923]
          Length = 188

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 43/156 (27%), Positives = 80/156 (51%), Gaps = 2/156 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVD-VAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G  +V+   G  +  +    + +     ++ RL  + + +   +   
Sbjct: 1   MRVMGVDPGLTRCGLSVVENGRGSQVVALDVDVVRTPSDAPVSKRLLAVSDVVEHWLDAH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P+  A+E+VF  ++    +   QA  +  L+ A   I V  + P+ +K AV G G  +K
Sbjct: 61  HPDVMAIERVFSQQNVSTVMGTAQAGGVIALAAARRGIDVHFHTPSEVKAAVTGNGAANK 120

Query: 124 KQIHMMLKMLM-PESFFKGKDAADALAIAVCHAYHA 158
            Q+  M+  ++  ++     DAADALA+A+CH + A
Sbjct: 121 AQVTAMVTRILALQAKPTPADAADALALAICHCWRA 156


>gi|78213470|ref|YP_382249.1| Holliday junction endonuclease RuvC [Synechococcus sp. CC9605]
 gi|123729675|sp|Q3AI88|RUVC_SYNSC RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|78197929|gb|ABB35694.1| Holliday junction resolvase RuvC [Synechococcus sp. CC9605]
          Length = 154

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 44/138 (31%), Positives = 74/138 (53%), Gaps = 1/138 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGL R G+G++D+       +  G I +   +S   R+ ++   L  +I+ WR
Sbjct: 1   MRILGIDPGLARVGYGVIDIQDGCQRMLDCGIIQTNSDRSDGDRMVEIAGDLRQLIRIWR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           PE AAVE+ F  +    T+ + QAR + +++ A  +IP+ E+ P  IK AV G GH +K 
Sbjct: 61  PELAAVEKFFFYRS-SNTINVVQARGVVVMTLARFKIPMVEFPPMQIKLAVAGFGHAEKD 119

Query: 125 QIHMMLKMLMPESFFKGK 142
           ++   +   +        
Sbjct: 120 EVLEAVMRELSLEEPPRP 137


>gi|296390676|ref|ZP_06880151.1| Holliday junction resolvase [Pseudomonas aeruginosa PAb1]
          Length = 134

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 45/116 (38%), Positives = 73/116 (62%)

Query: 45  LAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVS 104
           +  RL  ++  + +VI+   P   ++EQVF+ ++A + LKLGQAR  AI++     + V+
Sbjct: 1   MHERLHVVFRSVREVIRTHGPTALSIEQVFMARNADSALKLGQARGAAIVAAMEEGLSVA 60

Query: 105 EYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           EY  + +K+AV+G G  DK+Q+ MM+  L+  +     DA+DALAIA+CHA+   S
Sbjct: 61  EYTASQVKQAVVGTGGADKQQVQMMVMHLLKLTQKPQIDASDALAIALCHAHTQQS 116


>gi|281358768|ref|ZP_06245244.1| crossover junction endodeoxyribonuclease RuvC [Victivallis vadensis
           ATCC BAA-548]
 gi|281314795|gb|EFA98832.1| crossover junction endodeoxyribonuclease RuvC [Victivallis vadensis
           ATCC BAA-548]
          Length = 169

 Score =  162 bits (411), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 45/153 (29%), Positives = 86/153 (56%), Gaps = 2/153 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAG-DNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           + I+GIDP +R TG+G++      +L  +  G I +  +   +  L +L  G+ ++++ +
Sbjct: 1   MVILGIDPAIRTTGYGVIRTDSLSHLEILDCGVIANSPKLPHSECLRRLAGGIRELVQAF 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P+ A++E+ F+ ++A   + LG AR   + +   + +P   Y+P T K+A +G G   K
Sbjct: 61  HPDYASIEEPFMGRNASTAIILGMARGGILTALVESGVPTYAYSPKTAKRAAVGTGMATK 120

Query: 124 KQIHMMLKMLMPESFFK-GKDAADALAIAVCHA 155
           +QI ++L   +     +   D+ DALA+A+CHA
Sbjct: 121 EQIAILLAAELGIEIERIPLDSTDALALAICHA 153


>gi|187736503|ref|YP_001878615.1| crossover junction endodeoxyribonuclease RuvC [Akkermansia
           muciniphila ATCC BAA-835]
 gi|238691872|sp|B2UP63|RUVC_AKKM8 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|187426555|gb|ACD05834.1| crossover junction endodeoxyribonuclease RuvC [Akkermansia
           muciniphila ATCC BAA-835]
          Length = 167

 Score =  162 bits (411), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 47/154 (30%), Positives = 83/154 (53%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+ IDP +R TG+ +V+        +  GT+      S +  L  + + L ++I  W 
Sbjct: 1   MRILAIDPAIRNTGYAVVEGDYRRARALDYGTLSIPRSVSQSGCLLAIKQHLGNLIDKWN 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+E AVE++   +     + +G A+A  +++ A A + + EY+P ++K +V+G G   K 
Sbjct: 61  PDEMAVERIIYVQSHQTAITMGAAKAAVVIAAAEAGLRIMEYSPKSVKLSVVGRGAAQKT 120

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHA 158
           Q+  M++ L+        DAADALAI + H + A
Sbjct: 121 QVAFMVRALLELRETPESDAADALAIGLTHLFSA 154


>gi|320011891|gb|ADW06741.1| crossover junction endodeoxyribonuclease RuvC [Streptomyces
           flavogriseus ATCC 33331]
          Length = 177

 Score =  162 bits (411), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 56/156 (35%), Positives = 85/156 (54%), Gaps = 2/156 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G G+V+      L  V  G + +     L  RL  +  G+   +   
Sbjct: 1   MRVLGVDPGLTRCGVGVVEGVAGRPLTMVGVGVVRTPADAELGHRLVAIERGIEQWLDEH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RPE  AVE+VF   +    +   QA A+A+L  +   IPV+ + P+ +K AV G G  DK
Sbjct: 61  RPEYVAVERVFAQHNVRTVMGTAQASAVAMLCASRRGIPVALHTPSEVKAAVTGSGRADK 120

Query: 124 KQIHMMLKMLM-PESFFKGKDAADALAIAVCHAYHA 158
            Q+  M+  L+  ++  K  DAADALA+A+CH + A
Sbjct: 121 AQVGAMVTRLLRLDAPPKPADAADALALAICHIWRA 156


>gi|284054437|ref|ZP_06384647.1| Holliday junction resolvase [Arthrospira platensis str. Paraca]
          Length = 175

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 7/142 (4%)

Query: 5   IRIIGIDPGLRRTGWGIVDVA------GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTD 58
           +RI+G+DPGL   G+GI++        G     +  G I +   Q L  RL  +Y  L  
Sbjct: 9   VRIMGLDPGLATLGFGIIECQTGEAGGGSLFSVIDFGAIQTEAHQPLGDRLQTIYADLHT 68

Query: 59  VIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGV 118
           +++ W+P+   VE++F  +     + + QAR + +L  A   +P+ E  P  IK+A+ G 
Sbjct: 69  LLEQWQPDLVGVEKLFFYRMGNT-IAVAQARGVLVLVLAQRHLPIFELTPAQIKQALTGY 127

Query: 119 GHGDKKQIHMMLKMLMPESFFK 140
           G+  K Q+   +   +      
Sbjct: 128 GNAKKYQVQEAVARELNLQAIP 149


>gi|145224408|ref|YP_001135086.1| Holliday junction resolvase [Mycobacterium gilvum PYR-GCK]
 gi|145216894|gb|ABP46298.1| Holliday junction endonuclease RuvC [Mycobacterium gilvum PYR-GCK]
          Length = 220

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 48/158 (30%), Positives = 81/158 (51%), Gaps = 2/158 (1%)

Query: 3   KSIRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
             +R++G+DPGL R G  +++   G  +  +    + +     LA RL  +   +   + 
Sbjct: 27  AGVRVMGVDPGLTRCGLSVIESGRGRQVIALDVDVVRTPSDHPLAHRLLAISNAVEHWLD 86

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
             RP+  A+E+VF N++A   +   QA  +  L+ A   I V  + P+ +K AV G G  
Sbjct: 87  THRPDVIAIERVFSNQNANTAMGTAQAGGVVALAAARRDIDVHFHTPSEVKAAVTGNGRA 146

Query: 122 DKKQIHMMLKMLM-PESFFKGKDAADALAIAVCHAYHA 158
           DK Q+  M+  ++  +      DAADALA+A+CH + A
Sbjct: 147 DKAQVTEMVTRILALQQKPTPADAADALALAICHCWRA 184


>gi|21232456|ref|NP_638373.1| Holliday junction resolvase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66767460|ref|YP_242222.1| Holliday junction resolvase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|188990566|ref|YP_001902576.1| Holliday junction resolvase [Xanthomonas campestris pv. campestris
           str. B100]
 gi|24638204|sp|Q8P6E4|RUVC_XANCP RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|81306560|sp|Q4UXM1|RUVC_XANC8 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|229558765|sp|B0RPY3|RUVC_XANCB RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|21114238|gb|AAM42297.1| holliday junction resolvase, endodeoxyribonuclease [Xanthomonas
           campestris pv. campestris str. ATCC 33913]
 gi|66572792|gb|AAY48202.1| holliday junction resolvase, endodeoxyribonuclease [Xanthomonas
           campestris pv. campestris str. 8004]
 gi|167732326|emb|CAP50518.1| holliday junction resolvase [Xanthomonas campestris pv. campestris]
          Length = 174

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 54/134 (40%), Positives = 78/134 (58%), Gaps = 1/134 (0%)

Query: 6   RIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           RI+GIDPG +RTG GI+DV        V    +V       A RL +L  GL ++I+ ++
Sbjct: 3   RILGIDPGSQRTGIGIIDVDESGRSRHVFHAPLVLLGEGDFAQRLKRLLHGLGELIETYQ 62

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+E A+E+VF+ K A + LKLG AR  AI +  L  +PV EYA   IK A++G G  DK 
Sbjct: 63  PQEVAIEKVFMGKSADSALKLGHARGAAICAVVLRDLPVHEYAATEIKLALVGKGGADKV 122

Query: 125 QIHMMLKMLMPESF 138
           Q+  M+ +++    
Sbjct: 123 QVQHMVGIMLNLKG 136


>gi|17229789|ref|NP_486337.1| Holliday junction resolvase [Nostoc sp. PCC 7120]
 gi|3914945|sp|O52751|RUVC_ANASP RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|2896027|gb|AAC03106.1| holiday junction resolvase [Nostoc sp. PCC 7120]
 gi|17131389|dbj|BAB73996.1| holliday junction resolvase [Nostoc sp. PCC 7120]
          Length = 163

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 38/144 (26%), Positives = 70/144 (48%), Gaps = 8/144 (5%)

Query: 6   RIIGIDPGLRRTGWGIV-------DVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTD 58
           RI+G+DPGL   G+G +        +    +  +  G I +     +  RLC L++ L  
Sbjct: 4   RILGLDPGLAILGFGAITCTPGLTQLQSTKVNVLDFGVIKTSADIEIGQRLCTLFDDLHT 63

Query: 59  VIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGV 118
           VI   +P+  A+E++F  +   +T+ + QAR + +L+ A   +P  E+ P  IK A+ G 
Sbjct: 64  VIDQLQPDVVAIEKLFFYRM-SSTIVVAQARGVVMLALAQHHLPYVEFTPAQIKLALTGY 122

Query: 119 GHGDKKQIHMMLKMLMPESFFKGK 142
           G+ DK ++   +   +  +     
Sbjct: 123 GNADKSEVQEAVARELDLAEIPRP 146


>gi|291565685|dbj|BAI87957.1| crossover junction endodeoxyribonuclease RuvC [Arthrospira
           platensis NIES-39]
          Length = 169

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 7/142 (4%)

Query: 5   IRIIGIDPGLRRTGWGIVDVA----GDN--LCFVSSGTIVSCVRQSLAFRLCQLYEGLTD 58
           +RI+G+DPGL   G+GI++      G       +  G I +   Q L  RL  +Y  L  
Sbjct: 3   VRIMGLDPGLATLGFGIIECQTGEAGGRSLFSVIDFGAIQTEAHQPLGDRLQTIYADLHT 62

Query: 59  VIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGV 118
           +++ W+P+   VE++F  +     + + QAR + +L  A   +P+ E  P  IK+A+ G 
Sbjct: 63  LLEQWQPDLVGVEKLFFYRMGNT-IAVAQARGVLVLVLAQRHLPIFELTPAQIKQALTGY 121

Query: 119 GHGDKKQIHMMLKMLMPESFFK 140
           G+  K Q+   +   +      
Sbjct: 122 GNAKKYQVQEAVARELNLQAIP 143


>gi|296393858|ref|YP_003658742.1| crossover junction endodeoxyribonuclease RuvC [Segniliparus
           rotundus DSM 44985]
 gi|296181005|gb|ADG97911.1| crossover junction endodeoxyribonuclease RuvC [Segniliparus
           rotundus DSM 44985]
          Length = 189

 Score =  162 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 37/133 (27%), Positives = 67/133 (50%), Gaps = 1/133 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G  +V+  +G ++  +      +  + SL  RL ++   +   + + 
Sbjct: 1   MRVMGVDPGLTRCGLALVETGSGRSVTALDVDVCHTSPQASLQDRLSKIAAEVEHWLDSH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RP+  AVEQVF   +    + + Q   +  L  A   IP+  + P+ +K AV G G  DK
Sbjct: 61  RPDVVAVEQVFAQHNVRTVMGVAQVSGVVALLSAKRSIPMRTHTPSEVKAAVTGNGRADK 120

Query: 124 KQIHMMLKMLMPE 136
            Q+  M+  ++  
Sbjct: 121 DQVTAMVTRILGL 133


>gi|32490863|ref|NP_871117.1| hypothetical protein WGLp114 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|30173258|sp|Q8D387|RUVC_WIGBR RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|25166069|dbj|BAC24260.1| ruvC [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 161

 Score =  162 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 54/154 (35%), Positives = 84/154 (54%), Gaps = 1/154 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           IIGIDPG   TG+GI+    + L  + SG+I    +     RL  +Y  + ++I  ++P+
Sbjct: 4   IIGIDPGSYVTGYGIIKSEKNTLKHIKSGSIFL-KKHDFKKRLKIIYICIKNIINKFKPK 62

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
              +EQ+F +K+  + LKLGQA   A L+     I + EYA   IKK ++G G   K Q+
Sbjct: 63  YFVIEQIFFSKNPSSVLKLGQASCAATLAAINLDILIFEYASKKIKKILVGDGKAKKLQV 122

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
              +  ++  S   G D +DALA+A+ H Y  N+
Sbjct: 123 KNKVCSILNLSKSIGIDTSDALAVAITHHYLINN 156


>gi|194477212|ref|YP_002049391.1| Holliday junction resolvase RuvC [Paulinella chromatophora]
 gi|171192219|gb|ACB43181.1| Holliday junction resolvase RuvC [Paulinella chromatophora]
          Length = 154

 Score =  162 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 41/138 (29%), Positives = 73/138 (52%), Gaps = 1/138 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGL   G+G+VD+  +    +  G I +  +++   RL ++   +  ++K WR
Sbjct: 1   MRILGIDPGLASLGYGVVDIFNNQKQMLGCGVIQTDKKRAEGDRLVEISRDIRTIVKLWR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           PE A++EQ F  +       + QAR +AIL+ A  +IP+ E+ P  +K  ++G G+  K 
Sbjct: 61  PELASIEQFFFYRSNNTV-SILQARGVAILTLAYLKIPIVEFTPMQVKLTLVGSGNAKKY 119

Query: 125 QIHMMLKMLMPESFFKGK 142
           Q+   +   +        
Sbjct: 120 QVLETVMKELQLKSPPSP 137


>gi|225872209|ref|YP_002753664.1| crossover junction endodeoxyribonuclease RuvC [Acidobacterium
           capsulatum ATCC 51196]
 gi|254767452|sp|C1F130|RUVC_ACIC5 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|225791927|gb|ACO32017.1| crossover junction endodeoxyribonuclease RuvC [Acidobacterium
           capsulatum ATCC 51196]
          Length = 171

 Score =  162 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 63/164 (38%), Positives = 92/164 (56%), Gaps = 8/164 (4%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDN-------LCFVSSGTIVSCVRQSLAFRLCQLYEGLT 57
           +RI GID G   TG+GIV+            L  ++ G I    + +LA RL  ++  L 
Sbjct: 1   MRIFGIDCGSEITGYGIVECPDGTPRSGQPDLRLIAFGGIRPAKKLTLAERLAFVHRELL 60

Query: 58  DVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIG 117
             +   +P+  AVE+VF + +A + LKLG  R +A+L+ A A +P++EYAP TIK  V G
Sbjct: 61  TQLAAHQPDLVAVEEVFYSVNAKSALKLGHVRGVALLAAATAGLPIAEYAPLTIKSTVTG 120

Query: 118 VGHGDKKQIHMMLKMLMPESFFK-GKDAADALAIAVCHAYHANS 160
            G   K+Q+  M+  L+         DAADALAIA+CH +HA +
Sbjct: 121 YGLAQKEQVQFMVARLLHMPEPPEPADAADALAIAICHIHHAQT 164


>gi|302561706|ref|ZP_07314048.1| crossover junction endodeoxyribonuclease RuvC [Streptomyces
           griseoflavus Tu4000]
 gi|302479324|gb|EFL42417.1| crossover junction endodeoxyribonuclease RuvC [Streptomyces
           griseoflavus Tu4000]
          Length = 191

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 57/156 (36%), Positives = 86/156 (55%), Gaps = 2/156 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G G+V+      L  +  G + +     L  RL  + +GL   +   
Sbjct: 1   MRVLGVDPGLTRCGVGVVEGVAGRPLTMLGVGVVRTPADADLGHRLVAVEQGLEQWLDEH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RPE  AVE+VF   +    +   QA A+AIL  +   IPV+ + P+ +K AV G G  DK
Sbjct: 61  RPEYVAVERVFSQHNVRTVMGTAQASAVAILCASRRGIPVALHTPSEVKAAVTGSGRADK 120

Query: 124 KQIHMMLKMLM-PESFFKGKDAADALAIAVCHAYHA 158
            Q+  M+  L+  ++  K  DAADALA+A+CH + A
Sbjct: 121 AQVGAMVTRLLRLDAPPKPADAADALALAICHIWRA 156


>gi|318057103|ref|ZP_07975826.1| Holliday junction resolvase [Streptomyces sp. SA3_actG]
 gi|318075776|ref|ZP_07983108.1| Holliday junction resolvase [Streptomyces sp. SA3_actF]
          Length = 184

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 56/158 (35%), Positives = 86/158 (54%), Gaps = 2/158 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G G+VD      L  V  G + +     L+ RL  +  G+ + +   
Sbjct: 1   MRVLGVDPGLTRCGVGVVDGVPGRPLTMVGVGVVRTPADAELSRRLLAVEAGIEEWLDTH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RPE  A+E+VF   +    +   QA A+A+L  A   +PV+ + P+ +K AV G G  DK
Sbjct: 61  RPEYVAIERVFSQHNVRTVMGTAQASAVAMLCAARRGLPVALHTPSEVKAAVTGSGRADK 120

Query: 124 KQIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHANS 160
            Q+  M+  L+      K  DAADALA+A+CH + A +
Sbjct: 121 AQVGAMVTRLLRLAEPPKPADAADALALAICHIWRAPT 158


>gi|119487876|ref|ZP_01621373.1| Holliday junction resolvase [Lyngbya sp. PCC 8106]
 gi|119455452|gb|EAW36590.1| Holliday junction resolvase [Lyngbya sp. PCC 8106]
          Length = 168

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 41/146 (28%), Positives = 74/146 (50%), Gaps = 9/146 (6%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDN------LCFVSSGTIVSCVRQSLAFRLCQLYE 54
           M++  RIIG DPGL   G+G++            +  +  G I +   Q +  RLC +YE
Sbjct: 1   MQR--RIIGFDPGLATLGFGVIHCQNKRERGGYPVSLIDFGVIKTPAHQEMGKRLCTIYE 58

Query: 55  GLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKA 114
            L  +I+ ++P+ A  E++F  +     + L QAR I +L  A  +IP+ E++P  +K+A
Sbjct: 59  DLHTLIEQFKPDLAVAEKLFFYRMGNT-ISLAQARGILMLVLAQEKIPLVEFSPPQVKQA 117

Query: 115 VIGVGHGDKKQIHMMLKMLMPESFFK 140
           + G G+ +K ++   +   +      
Sbjct: 118 LTGYGNANKVEVQNAVARELDLDKIP 143


>gi|254821997|ref|ZP_05226998.1| Holliday junction resolvase [Mycobacterium intracellulare ATCC
           13950]
          Length = 184

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 47/156 (30%), Positives = 79/156 (50%), Gaps = 2/156 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G  +V+   G  +  +    + +     LA RL  + + +   +   
Sbjct: 1   MRVMGVDPGLTRCGLSVVESGRGRTVVALDVDVVRTPSDAPLAERLLTISDAVEHWLATH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P+  AVE+VF   +    +   QA  +  L+ A   I V  + P+ +K AV G G  DK
Sbjct: 61  EPDVMAVERVFSQLNVSTVMGTAQAGGVVALAAARRGIDVHFHTPSEVKAAVTGNGAADK 120

Query: 124 KQIHMMLKMLM-PESFFKGKDAADALAIAVCHAYHA 158
            Q+  M+  ++  ++     DAADALA+A+CH + A
Sbjct: 121 AQVTAMVTRILALQAKPTPADAADALALAICHCWRA 156


>gi|297626361|ref|YP_003688124.1| Crossover junction endodeoxyribonuclease (Holliday junction
           nuclease ) (Holliday junction resolvase)
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296922126|emb|CBL56694.1| Crossover junction endodeoxyribonuclease (Holliday junction
           nuclease ) (Holliday junction resolvase)
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 203

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 43/132 (32%), Positives = 71/132 (53%), Gaps = 1/132 (0%)

Query: 8   IGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           +G+DPGL R G GIVD   G    FV+ G I +      A+RL  + EGL +   +++P+
Sbjct: 1   MGVDPGLTRCGVGIVDGTPGARPQFVAVGVIRTDPHTEHAYRLLAIEEGLGEWFDHYQPQ 60

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             ++E+VF   +      +GQ   IA++  A   I V+ + P+ +K AV G G  DK Q+
Sbjct: 61  AISIERVFAQHNLSTVTGIGQVAGIAMMLGARHGIDVALHTPSEVKSAVTGSGRADKAQV 120

Query: 127 HMMLKMLMPESF 138
            +M+  ++  + 
Sbjct: 121 GVMVAQVLHLAK 132


>gi|294628364|ref|ZP_06706924.1| crossover junction endodeoxyribonuclease RuvC [Streptomyces sp.
           e14]
 gi|292831697|gb|EFF90046.1| crossover junction endodeoxyribonuclease RuvC [Streptomyces sp.
           e14]
          Length = 182

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 56/156 (35%), Positives = 85/156 (54%), Gaps = 2/156 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G G+V+      L  +  G + +     L  RL  + +G+   +   
Sbjct: 1   MRVLGVDPGLTRCGVGVVEGVAGRPLTMIGVGVVRTPADADLGHRLVAVEQGIEQWLDEH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RPE  AVE+VF   +    +   QA A+AIL  +   +PV+ + P+ +K AV G G  DK
Sbjct: 61  RPEFVAVERVFSQHNVRTVMGTAQASAVAILCASRRGLPVALHTPSEVKAAVTGSGRADK 120

Query: 124 KQIHMMLKMLMPES-FFKGKDAADALAIAVCHAYHA 158
            Q+  M+  L+  S   K  DAADALA+A+CH + A
Sbjct: 121 AQVGAMVTRLLRLSAPPKPADAADALALAICHIWRA 156


>gi|15643341|ref|NP_228385.1| Holliday junction resolvase [Thermotoga maritima MSB8]
 gi|6685947|sp|Q9WZ45|RUVC_THEMA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|4981092|gb|AAD35660.1|AE001732_5 crossover junction endodeoxyribonuclease [Thermotoga maritima MSB8]
          Length = 168

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 49/139 (35%), Positives = 78/139 (56%)

Query: 4   SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           S+RI+G+DPG    G GI++V+G+ +  V  GTI +        RL ++YE    V++ +
Sbjct: 3   SLRILGVDPGYGIVGIGIIEVSGNRISHVFHGTIETPKNLPAEKRLKRIYEEFLKVLERF 62

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P+E A+E++F  K+    + +G+AR +  L+ A   IPV EYAPN +K ++ G G   K
Sbjct: 63  SPDECAMEKLFFVKNVTTAIGVGEARGVLFLALAEKNIPVFEYAPNEVKVSLSGYGRASK 122

Query: 124 KQIHMMLKMLMPESFFKGK 142
           KQI   +K  +  S     
Sbjct: 123 KQIQENVKRFLNLSEIPRP 141


>gi|302533405|ref|ZP_07285747.1| crossover junction endodeoxyribonuclease RuvC [Streptomyces sp. C]
 gi|302442300|gb|EFL14116.1| crossover junction endodeoxyribonuclease RuvC [Streptomyces sp. C]
          Length = 179

 Score =  160 bits (407), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 56/156 (35%), Positives = 84/156 (53%), Gaps = 2/156 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G G+V+      L  +  G + +     L  RL  +  G+ + +   
Sbjct: 1   MRVLGVDPGLTRCGVGVVEGVAGRPLTMIGVGVVRTPADAELGQRLVAIEAGIEEWLDAH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RPE  AVE+VF   +    +   QA A+A+L  A   IPV+ + P+ +K AV G G  DK
Sbjct: 61  RPEFVAVERVFSQHNVRTVMGTAQASAVAMLCAARRGIPVALHTPSEVKAAVTGSGRADK 120

Query: 124 KQIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHA 158
            Q+  M+  L+      K  DAADALA+A+CH + A
Sbjct: 121 AQVGAMVTRLLRLAEPPKPADAADALALAICHIWRA 156


>gi|29833375|ref|NP_828009.1| Holliday junction resolvase [Streptomyces avermitilis MA-4680]
 gi|44888447|sp|Q820F5|RUVC_STRAW RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|29610498|dbj|BAC74544.1| putative Holliday junction nuclease [Streptomyces avermitilis
           MA-4680]
          Length = 176

 Score =  160 bits (407), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 56/156 (35%), Positives = 86/156 (55%), Gaps = 2/156 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G G+V+      L     G + +     L  RL  + +G+   +  +
Sbjct: 1   MRVLGVDPGLTRCGVGVVEGVAGRPLTMRGVGVVRTPADAELGLRLVAIEQGIEQWLDEY 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RPE  AVE+VF   +    +   QA A+A+L  A   IPV+ + P+ +K AV G G  DK
Sbjct: 61  RPECVAVERVFSQHNVRTVMGTAQASAVAMLCAARRGIPVALHTPSEVKAAVTGSGRADK 120

Query: 124 KQIHMMLKMLM-PESFFKGKDAADALAIAVCHAYHA 158
            Q+  M+  L+  ++  K  DAADALA+A+CH + A
Sbjct: 121 AQVGAMVTRLLRLDAPPKPADAADALALAICHIWRA 156


>gi|86606552|ref|YP_475315.1| Holliday junction resolvase [Synechococcus sp. JA-3-3Ab]
 gi|86555094|gb|ABD00052.1| crossover junction endodeoxyribonuclease RuvC [Synechococcus sp.
           JA-3-3Ab]
          Length = 193

 Score =  160 bits (407), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 36/137 (26%), Positives = 67/137 (48%), Gaps = 1/137 (0%)

Query: 6   RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           RI+G+DPGL   G+G +      L  +  G I +   QS+  RL  LYE L ++++ ++P
Sbjct: 39  RILGLDPGLGTVGFGCILAGAGGLRSLDYGVISTPGEQSIPERLQTLYEDLKELLRQFQP 98

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
            +  +E++F  K     + + QAR + +L  A   +   E+ P  +K+++ G G  DK+ 
Sbjct: 99  HQVGLEKLFFYKMGNT-IPIAQARGVILLVLAQYHLVPVEFTPAQVKQSLTGYGRADKQA 157

Query: 126 IHMMLKMLMPESFFKGK 142
           +   +   +        
Sbjct: 158 VQAAVARELNLPSLPRP 174


>gi|318040305|ref|ZP_07972261.1| Holliday junction resolvase [Synechococcus sp. CB0101]
          Length = 158

 Score =  160 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 41/142 (28%), Positives = 72/142 (50%), Gaps = 5/142 (3%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAG----DNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           + I+GIDPGL R G+G+++V G         +  G I +   +S   R+ ++   L  +I
Sbjct: 1   MVILGIDPGLARVGYGLIEVEGTPGRGQQRLLDCGIIRTDPGRSEGERMVEIARDLRQLI 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
           + W+P+ A VE+ F  +    T+ + QAR + +++ A  +IPV E+ P  IK A+ G GH
Sbjct: 61  RAWQPQLAVVEKFFFYRS-STTISVVQARGVLMMTLARFQIPVVEFPPMQIKLALAGHGH 119

Query: 121 GDKKQIHMMLKMLMPESFFKGK 142
            +K  +   +   +        
Sbjct: 120 AEKDDVLAAVMRELNLDTPPRP 141


>gi|87124817|ref|ZP_01080665.1| Holliday junction resolvase RuvC [Synechococcus sp. RS9917]
 gi|86167696|gb|EAQ68955.1| Holliday junction resolvase RuvC [Synechococcus sp. RS9917]
          Length = 160

 Score =  160 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 42/144 (29%), Positives = 77/144 (53%), Gaps = 7/144 (4%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDN------LCFVSSGTIVSCVRQSLAFRLCQLYEGLTD 58
           +RI+G+DPGL R G+G+++V   +         +  G I +   +S   R+ ++   L  
Sbjct: 1   MRILGLDPGLARVGYGLIEVTAGSGVSAGTQRMLDCGMIRTDPGRSEGERMVEIAHDLRL 60

Query: 59  VIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGV 118
           +I++W+P+ AAVE+ F  +    T+ + QAR + +++ A  RIP  E+ P  IK+A+ G 
Sbjct: 61  LIRSWKPDLAAVEKFFFYRS-STTIAVVQARGVLMMTLARFRIPAVEFPPMQIKQALTGH 119

Query: 119 GHGDKKQIHMMLKMLMPESFFKGK 142
           GH +K ++   +   +  S     
Sbjct: 120 GHAEKDEVLEAVMRELDLSEPPRP 143


>gi|113477103|ref|YP_723164.1| Holliday junction resolvase [Trichodesmium erythraeum IMS101]
 gi|123351979|sp|Q10YI3|RUVC_TRIEI RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|110168151|gb|ABG52691.1| Holliday junction endonuclease RuvC [Trichodesmium erythraeum
           IMS101]
          Length = 163

 Score =  160 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 42/141 (29%), Positives = 71/141 (50%), Gaps = 8/141 (5%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDN-------LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDV 59
           I+G+DPGL   G+G++    ++          V  G I +  +Q +  RL  +YE L  +
Sbjct: 5   ILGLDPGLAVLGFGLIKCIYNSKTEKIDSTSLVDFGVIKTTKKQEMGQRLVTIYEDLHTI 64

Query: 60  IKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVG 119
           + N++P+ AA E++F  +     + + QAR I IL+ A   IP+ E+ P  IK+AV G G
Sbjct: 65  LNNFKPDLAATEKLFFYRMGNT-ILVAQARGILILALAQNEIPLIEFTPAQIKQAVTGYG 123

Query: 120 HGDKKQIHMMLKMLMPESFFK 140
           + DK  +   +   +      
Sbjct: 124 NADKYDVQQAVARELNLEEIP 144


>gi|315503186|ref|YP_004082073.1| crossover junction endodeoxyribonuclease ruvc [Micromonospora sp.
           L5]
 gi|315409805|gb|ADU07922.1| crossover junction endodeoxyribonuclease RuvC [Micromonospora sp.
           L5]
          Length = 175

 Score =  160 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 58/158 (36%), Positives = 87/158 (55%), Gaps = 2/158 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNL-CFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G G+V+         V+   + +     LA RL  L   LTD++   
Sbjct: 1   MRVLGVDPGLTRCGVGVVEGVPGRPCTLVAYYVVYTDPEDDLALRLLHLDRSLTDLVAEH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RP+  AVE+VF   +    +   QA  +A+L+ A A +PV+ Y P+ +K AV G G  DK
Sbjct: 61  RPDAVAVERVFSQHNVRTVMGTAQASGVAVLAGARAGLPVTTYTPSEVKAAVTGSGQADK 120

Query: 124 KQIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHANS 160
           KQ+  M+  L+      K  DAADALA+A+CH +   +
Sbjct: 121 KQMTTMVTRLLRLPEPPKPADAADALALAICHVWRGGT 158


>gi|260435322|ref|ZP_05789292.1| crossover junction endodeoxyribonuclease RuvC [Synechococcus sp. WH
           8109]
 gi|260413196|gb|EEX06492.1| crossover junction endodeoxyribonuclease RuvC [Synechococcus sp. WH
           8109]
          Length = 154

 Score =  160 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 44/138 (31%), Positives = 74/138 (53%), Gaps = 1/138 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GIDPGL R G+G++D+       +  G I +   +S   R+ ++   L  +I+ WR
Sbjct: 1   MRILGIDPGLARVGYGVIDIQDGCQRMLDCGIIQTDSGRSDGDRMVEMAGDLRQLIRIWR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           PE AAVE+ F  +    T+ + QAR + +++ A  +IP+ E+ P  IK AV G GH +K 
Sbjct: 61  PELAAVEKFFFYRS-SNTINVVQARGVVVMTLARFKIPMVEFPPMQIKLAVAGFGHAEKD 119

Query: 125 QIHMMLKMLMPESFFKGK 142
           ++   +   +        
Sbjct: 120 EVLEAVMRELNLEEPPRP 137


>gi|196228704|ref|ZP_03127570.1| crossover junction endodeoxyribonuclease RuvC [Chthoniobacter
           flavus Ellin428]
 gi|196226985|gb|EDY21489.1| crossover junction endodeoxyribonuclease RuvC [Chthoniobacter
           flavus Ellin428]
          Length = 167

 Score =  160 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 56/157 (35%), Positives = 89/157 (56%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++ IDP LR TG+ I+D  G+ +  V+ G + +      +  L  ++E +TD+I+  R
Sbjct: 1   MRVLSIDPSLRGTGFAILDGEGNKIRAVTYGVVKNAPALLPSGCLVAIHERITDLIREHR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           PE AA E +   +     + LG AR  A+L+ A   +P+ EYAP  +K++V+G G  DK 
Sbjct: 61  PECAAFEGIIYVQSHRVAITLGAARGAALLAAASLGLPIYEYAPRRVKQSVVGRGGADKG 120

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSG 161
           Q+  M++ L+  +     DAADALAI + H   A S 
Sbjct: 121 QVGFMVRALLGLTETPSPDAADALAIGLTHLQTAASA 157


>gi|256825359|ref|YP_003149319.1| Holliday junction endonuclease RuvC [Kytococcus sedentarius DSM
           20547]
 gi|256688752|gb|ACV06554.1| Holliday junction endonuclease RuvC [Kytococcus sedentarius DSM
           20547]
          Length = 208

 Score =  160 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 40/134 (29%), Positives = 70/134 (52%), Gaps = 1/134 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G G+V+   G +L  V+     +        RL  +   + D I+ +
Sbjct: 1   MRVLGVDPGLTRCGLGVVEGRRGGSLRMVAVDVARTSADTLPEQRLLSVSRRIEDWIETY 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P+  AVE++F   D    +   QA  +A+++ A A I V ++ P+ +K AV G G   K
Sbjct: 61  DPDAVAVERIFARSDVSTIMGTVQASGVALVAAARAGIEVGQHTPSEVKAAVCGNGRAGK 120

Query: 124 KQIHMMLKMLMPES 137
           +Q+  M+  ++  S
Sbjct: 121 EQVTSMVVRILSLS 134


>gi|302550161|ref|ZP_07302503.1| crossover junction endodeoxyribonuclease RuvC [Streptomyces
           viridochromogenes DSM 40736]
 gi|302467779|gb|EFL30872.1| crossover junction endodeoxyribonuclease RuvC [Streptomyces
           viridochromogenes DSM 40736]
          Length = 176

 Score =  160 bits (406), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 57/156 (36%), Positives = 85/156 (54%), Gaps = 2/156 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G G+V+      L  +  G + +     L  RL  + +G+   +   
Sbjct: 1   MRVLGVDPGLTRCGVGVVEGVAGRPLTMIGVGVVRTPADADLGHRLVAVEQGIEQWLDEH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RPE  AVE+VF   +    +   QA A+A+L  A   IPV+ + P+ +K AV G G  DK
Sbjct: 61  RPEFVAVERVFSQHNVRTVMGTAQASAVAMLCAARRGIPVALHTPSEVKAAVTGSGRADK 120

Query: 124 KQIHMMLKMLMPES-FFKGKDAADALAIAVCHAYHA 158
            Q+  M+  L+  S   K  DAADALA+A+CH + A
Sbjct: 121 AQVGAMVTRLLRLSAPPKPADAADALALAICHIWRA 156


>gi|282864189|ref|ZP_06273245.1| crossover junction endodeoxyribonuclease RuvC [Streptomyces sp.
           ACTE]
 gi|282560676|gb|EFB66222.1| crossover junction endodeoxyribonuclease RuvC [Streptomyces sp.
           ACTE]
          Length = 177

 Score =  160 bits (406), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 57/156 (36%), Positives = 85/156 (54%), Gaps = 2/156 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G G+V+      L  V  G + +     L  RL  +  G+   +   
Sbjct: 1   MRVLGVDPGLTRCGVGVVEGVAGRPLTMVGVGVVRTPSDAELGHRLVAVERGIEQWLDEH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RPE  AVE+VF   +    +   QA A+A+L  A   IPV+ + P+ +K AV G G  DK
Sbjct: 61  RPEFVAVERVFSQHNVSTVMGTAQASAVAMLCAARRGIPVALHTPSEVKAAVTGSGRADK 120

Query: 124 KQIHMMLKMLM-PESFFKGKDAADALAIAVCHAYHA 158
            Q+  M+  L+  ++  K  DAADALA+A+CH + A
Sbjct: 121 AQVGAMVTRLLRLDAPPKPADAADALALAICHIWRA 156


>gi|328881168|emb|CCA54407.1| Crossover junction endodeoxyribonuclease RuvC [Streptomyces
           venezuelae ATCC 10712]
          Length = 187

 Score =  160 bits (405), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 54/156 (34%), Positives = 85/156 (54%), Gaps = 2/156 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G G+V+      L  +  G + +     +  RL  +  G+ + +  +
Sbjct: 1   MRVLGVDPGLTRCGVGVVEGVAGRPLSMLGVGVVRTAADDDIGLRLVGIERGIEEWLDRF 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            PE  AVE+VF   +    +   QA A+A+L  +   IPV+ + P+ +K AV G G  DK
Sbjct: 61  SPELVAVERVFAQHNVRTVMGTAQASAVAMLCASRRGIPVALHTPSEVKAAVTGSGRADK 120

Query: 124 KQIHMMLKMLMPES-FFKGKDAADALAIAVCHAYHA 158
            Q+  M+  L+  S   K  DAADALA+A+CH + A
Sbjct: 121 AQVGAMVTRLLRLSAPPKPADAADALALAICHIWRA 156


>gi|326780472|ref|ZP_08239737.1| crossover junction endodeoxyribonuclease RuvC [Streptomyces cf.
           griseus XylebKG-1]
 gi|326660805|gb|EGE45651.1| crossover junction endodeoxyribonuclease RuvC [Streptomyces cf.
           griseus XylebKG-1]
          Length = 204

 Score =  160 bits (405), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 55/156 (35%), Positives = 83/156 (53%), Gaps = 2/156 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++GIDPGL R G G+V+      L  +  G + +     L  RL  +  G+   +   
Sbjct: 1   MRVLGIDPGLTRCGVGVVEGVAGRPLTMIGVGVVRTSSDADLGDRLVAVERGIEQWLDEH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P   AVE+VF   +    +   QA A+A+L  A   IPV+ + P+ +K AV G G  DK
Sbjct: 61  SPGYVAVERVFAQHNVRTVMGTAQASAVAMLCAARRGIPVALHTPSEVKAAVTGSGRADK 120

Query: 124 KQIHMMLKMLM-PESFFKGKDAADALAIAVCHAYHA 158
            Q+  M+  L+  ++  K  DAADALA+A+CH + A
Sbjct: 121 AQVGAMVTRLLRLDAPPKPADAADALALAICHIWRA 156


>gi|307326760|ref|ZP_07605952.1| crossover junction endodeoxyribonuclease RuvC [Streptomyces
           violaceusniger Tu 4113]
 gi|306887523|gb|EFN18517.1| crossover junction endodeoxyribonuclease RuvC [Streptomyces
           violaceusniger Tu 4113]
          Length = 201

 Score =  160 bits (405), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 54/156 (34%), Positives = 87/156 (55%), Gaps = 2/156 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G G+V+      L  +  G + +    ++  RL  +  G+ + +   
Sbjct: 1   MRVLGVDPGLTRCGVGVVEGVAGRPLRMLGVGVVRTGADLAIGDRLVLIERGIEEWLDAH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RPE  AVE+VF   +    +   QA A+A+L  A   +PV+ + P+ +K AV G G  DK
Sbjct: 61  RPESVAVERVFSQHNVRTVMGTAQASAVAMLCAARRGLPVALHTPSEVKAAVTGSGRADK 120

Query: 124 KQIHMMLKMLM-PESFFKGKDAADALAIAVCHAYHA 158
            Q+  M+  L+  ++  K  DAADALA+A+CH + A
Sbjct: 121 AQVGSMVTRLLRLDAPPKPADAADALALAICHIWRA 156


>gi|159037422|ref|YP_001536675.1| Holliday junction resolvase [Salinispora arenicola CNS-205]
 gi|187611450|sp|A8LXW7|RUVC_SALAI RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|157916257|gb|ABV97684.1| crossover junction endodeoxyribonuclease RuvC [Salinispora
           arenicola CNS-205]
          Length = 175

 Score =  160 bits (405), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 56/158 (35%), Positives = 83/158 (52%), Gaps = 2/158 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNL-CFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++GIDPGL R G G+V+         ++   + +     L  RL  L   LT ++   
Sbjct: 1   MRVLGIDPGLTRCGVGVVEGVPGRPCTLIAYHVVRTDPDDELPLRLLHLDRSLTALVAEH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RP+  AVE+VF   +    +   QA  +A+L+ A A IPV  Y P+ +K AV G G  DK
Sbjct: 61  RPDGVAVERVFSQHNVRTVMGTAQASGVAVLAGARAGIPVQTYTPSEVKAAVTGSGQADK 120

Query: 124 KQIHMMLKMLMPESFFK-GKDAADALAIAVCHAYHANS 160
            Q+  M+  L+  S      DAADALA+A+CH +   +
Sbjct: 121 AQMTAMVTRLLRLSEPPRPADAADALALAICHVWRGGT 158


>gi|285808234|gb|ADC35768.1| crossover junction endodeoxyribonuclease RuvC [uncultured bacterium
           293]
          Length = 167

 Score =  160 bits (405), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 58/163 (35%), Positives = 88/163 (53%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + I+G+DPG R TG+G ++  G     +  G +    RQ L  RL  ++E L  +I   R
Sbjct: 1   MIILGVDPGSRHTGYGAIESDGRRHHLLEKGVLSPAPRQDLPLRLHFIHERLAALIVRLR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P   AVE VF  + A + L LGQ R + +L+ A A + V  + P T+K  V G G  +K 
Sbjct: 61  PAAMAVEDVFHAQSARSALVLGQVRGVVLLAGAQAGLDVRSFPPATVKLQVTGHGQAEKA 120

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
           Q+ +M+  L+     +  DAADALA+A+CHA+ +      +A 
Sbjct: 121 QVALMVSHLLALPAQEAGDAADALAVALCHAHCSGPLAAVLAG 163


>gi|308371067|ref|ZP_07423718.2| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
           tuberculosis SUMu003]
 gi|308372345|ref|ZP_07428318.2| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
           tuberculosis SUMu004]
 gi|308375541|ref|ZP_07444274.2| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
           tuberculosis SUMu007]
 gi|308378400|ref|ZP_07482469.2| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
           tuberculosis SUMu009]
 gi|308405830|ref|ZP_07494395.2| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
           tuberculosis SUMu012]
 gi|308329915|gb|EFP18766.1| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
           tuberculosis SUMu003]
 gi|308333530|gb|EFP22381.1| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
           tuberculosis SUMu004]
 gi|308346002|gb|EFP34853.1| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
           tuberculosis SUMu007]
 gi|308352725|gb|EFP41576.1| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
           tuberculosis SUMu009]
 gi|308365152|gb|EFP54003.1| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
           tuberculosis SUMu012]
          Length = 185

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 48/163 (29%), Positives = 82/163 (50%), Gaps = 3/163 (1%)

Query: 8   IGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           +G+DPGL R G  +++   G  L  +    + +    +LA RL  + + +   +    PE
Sbjct: 1   MGVDPGLTRCGLSLIESGRGRQLTALDVDVVRTPSDAALAQRLLAISDAVEHWLDTHHPE 60

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+E+VF   +    +   QA  +  L+ A   + V  + P+ +K AV G G  DK Q+
Sbjct: 61  VVAIERVFSQLNVTTVMGTAQAGGVIALAAAKRGVDVHFHTPSEVKAAVTGNGSADKAQV 120

Query: 127 HMML-KMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
             M+ K+L  ++     DAADALA+A+CH + A +   ++A  
Sbjct: 121 TAMVTKILALQAKPTPADAADALALAICHCWRAPT-IARMAEA 162


>gi|311742329|ref|ZP_07716138.1| crossover junction endoribonuclease subunit C [Aeromicrobium
           marinum DSM 15272]
 gi|311313957|gb|EFQ83865.1| crossover junction endoribonuclease subunit C [Aeromicrobium
           marinum DSM 15272]
          Length = 169

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 40/132 (30%), Positives = 65/132 (49%), Gaps = 1/132 (0%)

Query: 8   IGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           +GIDPGL R G G+V+ + G  L  +    + +      A RL  L +G+ + +   RP+
Sbjct: 1   MGIDPGLTRLGLGVVEGSVGRPLTMLDVDVLRTPADLDPARRLRILADGIEERLLLHRPD 60

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             AVE+VF   +    +   Q   +A++  A   I V  + P+ +K AV G G  DK Q+
Sbjct: 61  AVAVERVFSQHNVRTVMGTAQVSGVAMMLAARHGIEVHLHTPSEVKAAVTGSGRADKAQV 120

Query: 127 HMMLKMLMPESF 138
             M+  L+  + 
Sbjct: 121 TQMVTRLLRLTE 132


>gi|114570974|ref|YP_757654.1| Holliday junction endonuclease RuvC [Maricaulis maris MCS10]
 gi|122315333|sp|Q0ALX7|RUVC_MARMM RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|114341436|gb|ABI66716.1| Holliday junction endonuclease RuvC [Maricaulis maris MCS10]
          Length = 166

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 70/167 (41%), Positives = 105/167 (62%), Gaps = 1/167 (0%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M  S+RI+GIDPGLRR GWG++ V G  L  ++ G +       L+ RL  L+  + D++
Sbjct: 1   MALSVRILGIDPGLRRMGWGVIRVEGSRLSAIAHGVVTPPTAAPLSERLMHLFNSVGDLV 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
           +   P+EAA+E+ F+  +A + LKLG ARA A+L+PA A +PV+EYA   +KK+V+G G 
Sbjct: 61  RQHGPDEAAIEEAFMAANAASALKLGHARAAAMLAPARAGLPVAEYAARLVKKSVVGTGA 120

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
            DK Q+  M+ +L+P +      A  ALAIA+CHA+H  +     A+
Sbjct: 121 ADKAQVAAMVGILLPGTKATADAAD-ALAIAICHAHHRRATSLGSAA 166


>gi|254411422|ref|ZP_05025199.1| crossover junction endodeoxyribonuclease RuvC [Microcoleus
           chthonoplastes PCC 7420]
 gi|196181923|gb|EDX76910.1| crossover junction endodeoxyribonuclease RuvC [Microcoleus
           chthonoplastes PCC 7420]
          Length = 171

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 38/149 (25%), Positives = 71/149 (47%), Gaps = 15/149 (10%)

Query: 6   RIIGIDPGLRRTGWGIV--------------DVAGDNLCFVSSGTIVSCVRQSLAFRLCQ 51
           RI+G+DPGL   G+G +                  +++  +  G I +  R  L  RLC 
Sbjct: 4   RILGLDPGLAILGFGAIICQAEVKPMTKVRGKSTSESVQLLDFGVIQTPARTELGKRLCT 63

Query: 52  LYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTI 111
           +YE L  +++  +P+  AVE++F  +     + + QAR +  L  A  ++P+ E+ P  +
Sbjct: 64  IYEDLHTILEQCQPDLVAVEKLFFYRMGNT-ITVAQARGVVTLVLAQHQVPMVEFTPGQV 122

Query: 112 KKAVIGVGHGDKKQIHMMLKMLMPESFFK 140
           K+A+ G G+ DK ++   +   +      
Sbjct: 123 KQALTGYGNADKHEVQQAVARELNLESIP 151


>gi|54025667|ref|YP_119909.1| Holliday junction resolvase [Nocardia farcinica IFM 10152]
 gi|81602597|sp|Q5YTE6|RUVC_NOCFA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|54017175|dbj|BAD58545.1| putative Holliday junction nuclease [Nocardia farcinica IFM 10152]
          Length = 189

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 37/133 (27%), Positives = 64/133 (48%), Gaps = 1/133 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G  +V+   G  +  +    + +     LA RL  + +     +   
Sbjct: 1   MRVMGVDPGLTRCGLSMVEGGHGRTVTALDVDVVRTPADMDLAHRLMLVADAAEYWMDTH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RP   A+E+VF   +    +   QA  +  L+ A   IPV  + P+ +K AV G G+ DK
Sbjct: 61  RPGAVAIERVFAQHNVRTAMGTAQAGGVIALAAARRDIPVVFHTPSEVKAAVTGNGNADK 120

Query: 124 KQIHMMLKMLMPE 136
            Q+  M+  ++  
Sbjct: 121 AQVTAMVTRILGL 133


>gi|22298680|ref|NP_681927.1| Holliday junction resolvase [Thermosynechococcus elongatus BP-1]
 gi|34222864|sp|Q8DJT5|RUVC_THEEB RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|22294860|dbj|BAC08689.1| Holliday juction resolvase [Thermosynechococcus elongatus BP-1]
          Length = 159

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 36/138 (26%), Positives = 65/138 (47%), Gaps = 1/138 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+G+DPGL   G+G ++V  D       G I +        RL  LY  L  +I   +
Sbjct: 1   MRILGLDPGLATLGYGCIEVYRDTCQVRDFGVITTSADLPTGDRLQSLYNDLHTLIPILQ 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  A+E++F  +    T+ + QAR + +L  +    P+ E  P  +K+A+ G G+  K 
Sbjct: 61  PDLVALERLFFYRM-SHTIGVAQARGVILLVLSQRHCPLLELTPPQVKQALTGYGNATKI 119

Query: 125 QIHMMLKMLMPESFFKGK 142
           ++   ++  +        
Sbjct: 120 EVQRAVQRELHLCTLPQP 137


>gi|297198359|ref|ZP_06915756.1| crossover junction endodeoxyribonuclease RuvC [Streptomyces sviceus
           ATCC 29083]
 gi|197714416|gb|EDY58450.1| crossover junction endodeoxyribonuclease RuvC [Streptomyces sviceus
           ATCC 29083]
          Length = 179

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 56/156 (35%), Positives = 86/156 (55%), Gaps = 2/156 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G G+V+      L  +  G + +     L  RL  + +G+   +   
Sbjct: 1   MRVLGVDPGLTRCGVGVVEGVAGRPLTMLGVGVVRTPSDAELGQRLVAVEQGIEQWLDQH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RPE  AVE+VF   +    +   QA A+A+L  A   IPV+ + P+ +K AV G G  DK
Sbjct: 61  RPEFVAVERVFSQHNVRTVMGTAQASAVAMLCAARRGIPVALHTPSEVKAAVTGSGRADK 120

Query: 124 KQIHMMLKMLM-PESFFKGKDAADALAIAVCHAYHA 158
            Q+  M+  L+  ++  K  DAADALA+A+CH + A
Sbjct: 121 AQVGAMVTRLLRLDAPPKPADAADALALAICHIWRA 156


>gi|309812859|ref|ZP_07706592.1| crossover junction endodeoxyribonuclease RuvC [Dermacoccus sp.
           Ellin185]
 gi|308433181|gb|EFP57080.1| crossover junction endodeoxyribonuclease RuvC [Dermacoccus sp.
           Ellin185]
          Length = 213

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 43/137 (31%), Positives = 69/137 (50%), Gaps = 1/137 (0%)

Query: 2   RKSIRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           R  +R++ +DPGL R G G+V    G  L  V+ G I +     L  RL +L   L  V 
Sbjct: 32  RCDVRVLAVDPGLTRCGVGVVATGQGSTLQIVTVGVIRTSADLPLHERLHELRVELDAVF 91

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
           +  +P+  AVE++F   D    +   QA A+ +L+ A   +P+  + P+ +K AV G G 
Sbjct: 92  ERTQPDAVAVERMFARHDVSTIMGTAQASAVPMLAAAERGLPLGLHTPSEVKAAVTGNGR 151

Query: 121 GDKKQIHMMLKMLMPES 137
            DK Q+  M+  ++   
Sbjct: 152 ADKAQVTTMVTRILGLE 168


>gi|15805467|ref|NP_294163.1| Holliday junction resolvase [Deinococcus radiodurans R1]
 gi|20978757|sp|Q9RX75|RUVC_DEIRA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|6458122|gb|AAF10018.1|AE001903_6 Holliday junction resolvase [Deinococcus radiodurans R1]
          Length = 179

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 40/131 (30%), Positives = 70/131 (53%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPGL   G G+V+        +    + +     +  RL  L+E LT ++  +R
Sbjct: 1   MRVLGIDPGLANLGLGLVEGDVRRAKHLYHVCLTTESAWLMPRRLQYLHEELTRLLTEYR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  A+E   + + A    K+GQA  +  L+ A A +P+  Y P  +KK+++G G  DK+
Sbjct: 61  PDAVAIEDQILRRQADVAFKVGQAFGVVQLACAQAGVPIHAYGPMQVKKSLVGTGRADKE 120

Query: 125 QIHMMLKMLMP 135
           Q+  M+K  + 
Sbjct: 121 QVIYMVKASLG 131


>gi|300864594|ref|ZP_07109453.1| Crossover junction endodeoxyribonuclease ruvC [Oscillatoria sp. PCC
           6506]
 gi|300337418|emb|CBN54601.1| Crossover junction endodeoxyribonuclease ruvC [Oscillatoria sp. PCC
           6506]
          Length = 174

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 42/150 (28%), Positives = 74/150 (49%), Gaps = 12/150 (8%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVA--------GDNLCFVSSGTIVSCVRQSLAFRLCQL 52
           M+K  RI+G+DPGL   G+G++D             +  +  G I +   Q +  RL  +
Sbjct: 1   MKK--RILGLDPGLAILGFGVIDCEIIAGKKDEDYRVSMIDFGVIKTPAGQEMGQRLRTI 58

Query: 53  YEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIK 112
           Y+ L  +I  ++P+ A  E++F  K   + + + QAR + +L  A   +P+ E+ P  IK
Sbjct: 59  YDDLNAIIDQFKPDLAVAEKLFFYKMG-SAIVVAQARGVLMLVLAQQNVPLVEFTPAQIK 117

Query: 113 KAVIGVGHGDKKQIHMML-KMLMPESFFKG 141
            A+ G G+ DK  +   + + L  +   K 
Sbjct: 118 LALTGRGNADKYDVQDAVARELELDDIPKP 147


>gi|308232187|ref|ZP_07415205.2| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
           tuberculosis SUMu001]
 gi|308369765|ref|ZP_07418969.2| crossover junction endodeoxyribonuclease RuvC [Mycobacterium
           tuberculosis SUMu002]
 gi|308214723|gb|EFO74122.1| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
           tuberculosis SUMu001]
 gi|308326463|gb|EFP15314.1| crossover junction endodeoxyribonuclease RuvC [Mycobacterium
           tuberculosis SUMu002]
          Length = 186

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 48/163 (29%), Positives = 82/163 (50%), Gaps = 3/163 (1%)

Query: 8   IGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           +G+DPGL R G  +++   G  L  +    + +    +LA RL  + + +   +    PE
Sbjct: 2   MGVDPGLTRCGLSLIESGRGRQLTALDVDVVRTPSDAALAQRLLAISDAVEHWLDTHHPE 61

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+E+VF   +    +   QA  +  L+ A   + V  + P+ +K AV G G  DK Q+
Sbjct: 62  VVAIERVFSQLNVTTVMGTAQAGGVIALAAAKRGVDVHFHTPSEVKAAVTGNGSADKAQV 121

Query: 127 HMML-KMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
             M+ K+L  ++     DAADALA+A+CH + A +   ++A  
Sbjct: 122 TAMVTKILALQAKPTPADAADALALAICHCWRAPT-IARMAEA 163


>gi|254383614|ref|ZP_04998964.1| crossover junction endodeoxyribonuclease ruvC [Streptomyces sp.
           Mg1]
 gi|194342509|gb|EDX23475.1| crossover junction endodeoxyribonuclease ruvC [Streptomyces sp.
           Mg1]
          Length = 176

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 44/133 (33%), Positives = 69/133 (51%), Gaps = 1/133 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G G+V+      L  +  G + +     L  RL  +  G+ + +   
Sbjct: 1   MRVLGVDPGLTRCGVGVVEGVAGRPLTMIGVGVVRTPADTELGNRLVAIERGIEEWLDEH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RPE  AVE+VF   +    +   QA A+A+L  A   IPV+ + P+ +K AV G G  DK
Sbjct: 61  RPEVVAVERVFSQHNVSTVMGTAQASAVAMLCAARRGIPVALHTPSEVKAAVTGSGRADK 120

Query: 124 KQIHMMLKMLMPE 136
            Q+  M+  L+  
Sbjct: 121 AQVGAMVTRLLRL 133


>gi|182439808|ref|YP_001827527.1| Holliday junction resolvase [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|238689024|sp|B1W3G2|RUVC_STRGG RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|178468324|dbj|BAG22844.1| putative Holliday junction nuclease [Streptomyces griseus subsp.
           griseus NBRC 13350]
          Length = 204

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 55/156 (35%), Positives = 83/156 (53%), Gaps = 2/156 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++GIDPGL R G G+V+      L  +  G + +     L  RL  +  G+   +   
Sbjct: 1   MRVLGIDPGLTRCGVGVVEGVAGRPLTMIGVGVVRTSSDAELGDRLVAVERGIEQWLDEH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P   AVE+VF   +    +   QA A+A+L  A   IPV+ + P+ +K AV G G  DK
Sbjct: 61  SPGYVAVERVFAQHNVRTVMGTAQASAVAMLCAARRGIPVALHTPSEVKAAVTGSGRADK 120

Query: 124 KQIHMMLKMLM-PESFFKGKDAADALAIAVCHAYHA 158
            Q+  M+  L+  ++  K  DAADALA+A+CH + A
Sbjct: 121 AQVGAMVTRLLRLDAPPKPADAADALALAICHIWRA 156


>gi|84496342|ref|ZP_00995196.1| Holliday junction resolvase [Janibacter sp. HTCC2649]
 gi|84383110|gb|EAP98991.1| Holliday junction resolvase [Janibacter sp. HTCC2649]
          Length = 165

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 50/149 (33%), Positives = 74/149 (49%), Gaps = 1/149 (0%)

Query: 11  DPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAV 70
           DPGL R G G+VD        V+ G + +      + RL  L   L   +  + P+  AV
Sbjct: 2   DPGLTRCGLGVVDGRAGRATMVAVGVVRTPSDAVPSQRLIFLERELDGWLDKFTPDVMAV 61

Query: 71  EQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMML 130
           E+VF + +    +    A AIA+L+     IPV  + P  +K +V G G  DK Q+  M+
Sbjct: 62  ERVFADTNVTQVMNTAHATAIALLTAGKRGIPVVFHTPTEVKASVTGSGRADKAQVTAMV 121

Query: 131 KMLMPE-SFFKGKDAADALAIAVCHAYHA 158
             ++   S  K  DAADALA+A+CH +  
Sbjct: 122 TRILKLDSPPKPADAADALALAICHLWRG 150


>gi|108799232|ref|YP_639429.1| Holliday junction resolvase [Mycobacterium sp. MCS]
 gi|119868348|ref|YP_938300.1| Holliday junction resolvase [Mycobacterium sp. KMS]
 gi|126434890|ref|YP_001070581.1| Holliday junction resolvase [Mycobacterium sp. JLS]
 gi|108769651|gb|ABG08373.1| Holliday junction endonuclease RuvC [Mycobacterium sp. MCS]
 gi|119694437|gb|ABL91510.1| Holliday junction endonuclease RuvC [Mycobacterium sp. KMS]
 gi|126234690|gb|ABN98090.1| Holliday junction endonuclease RuvC [Mycobacterium sp. JLS]
          Length = 193

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 45/150 (30%), Positives = 76/150 (50%), Gaps = 2/150 (1%)

Query: 11  DPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAA 69
           DPGL R G  +++   G  +  +    + +   + L  RL  + + +   +   RP+  A
Sbjct: 15  DPGLTRCGLSVIESGQGRKVIALDVDVVRTPADEQLHRRLLIISDTVEHWMDTHRPDVIA 74

Query: 70  VEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMM 129
           +E+VF N +A   +   QA  +  L+ A   I V  + P+ +K AV G G  DK Q+  M
Sbjct: 75  IERVFANHNANTAMGTAQAGGVIALAAAKRDIDVHFHTPSEVKAAVTGNGRADKAQVTEM 134

Query: 130 LKMLM-PESFFKGKDAADALAIAVCHAYHA 158
           +  ++  ++     DAADALA+A+CH + A
Sbjct: 135 VTRILALQAKPTPADAADALALAICHCWRA 164


>gi|220906354|ref|YP_002481665.1| Holliday junction resolvase [Cyanothece sp. PCC 7425]
 gi|254767468|sp|B8HX01|RUVC_CYAP4 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|219862965|gb|ACL43304.1| crossover junction endodeoxyribonuclease RuvC [Cyanothece sp. PCC
           7425]
          Length = 157

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 36/138 (26%), Positives = 73/138 (52%), Gaps = 2/138 (1%)

Query: 6   RIIGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           RI+G+DPGL   G+G + V  D  L  +  G I +   + +  RL  +YE L  ++++++
Sbjct: 4   RILGLDPGLATLGFGSITVQPDESLQVLDFGVIKTAAGEEIGSRLLTIYEDLHTLLQHFQ 63

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  A+E+ F  +    T+ + QAR + +L  A   + + E+ P  +K+ + G G+ DK+
Sbjct: 64  PDLVAIEKFFFYRM-SNTILVAQARGVILLVLAQHHLALMEFTPAQVKQTLTGHGNADKQ 122

Query: 125 QIHMMLKMLMPESFFKGK 142
           ++ + ++  +        
Sbjct: 123 EVQLAVQRELKLESLPRP 140


>gi|86607987|ref|YP_476749.1| Holliday junction resolvase [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|123751722|sp|Q2JP15|RUVC_SYNJB RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|86556529|gb|ABD01486.1| crossover junction endodeoxyribonuclease RuvC [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 168

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 36/137 (26%), Positives = 67/137 (48%), Gaps = 1/137 (0%)

Query: 6   RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           RI+G+DPGL   G+G +      L  V  G I +  + S+  RL  L+E L+ +++  RP
Sbjct: 14  RILGLDPGLGTMGFGCILAGSAGLKPVDYGVISTPSQHSMPERLQTLHEDLSQLLRQLRP 73

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
            +  +E++F  K     + + QAR + +L+ A   +   E+ P  +K+++ G G  DK+ 
Sbjct: 74  HQVGLEKLFFYKMGNT-IAIAQARGVILLTLAQHHLLPVEFTPAQVKQSLTGYGRADKQA 132

Query: 126 IHMMLKMLMPESFFKGK 142
           +   +   +        
Sbjct: 133 VQAAVARELNLPSLPRP 149


>gi|238926805|ref|ZP_04658565.1| crossover junction endodeoxyribonuclease [Selenomonas flueggei ATCC
           43531]
 gi|238885337|gb|EEQ48975.1| crossover junction endodeoxyribonuclease [Selenomonas flueggei ATCC
           43531]
          Length = 126

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 36/123 (29%), Positives = 67/123 (54%), Gaps = 1/123 (0%)

Query: 43  QSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIP 102
             +  RL ++Y  L ++I+ + PE   VEQ+F N++    + +GQAR + +L+ A   + 
Sbjct: 1   MPVEKRLLKIYTALDELIQKYHPEAMGVEQLFFNRNVTTAIPVGQARGVVLLAAAQNNLV 60

Query: 103 VSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESFFK-GKDAADALAIAVCHAYHANSG 161
           + E  P  +K++V G G   K+Q+  M+  L+         D ADALA+A+  A+  ++ 
Sbjct: 61  LIERTPLQVKQSVTGYGKATKEQVIYMVTKLLHLPEAPHPDDTADALAVAISAAHCMDTI 120

Query: 162 YYK 164
            ++
Sbjct: 121 AWR 123


>gi|257055536|ref|YP_003133368.1| Holliday junction resolvase [Saccharomonospora viridis DSM 43017]
 gi|256585408|gb|ACU96541.1| Holliday junction endonuclease RuvC [Saccharomonospora viridis DSM
           43017]
          Length = 196

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 41/139 (29%), Positives = 71/139 (51%), Gaps = 1/139 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G G+VD      +  V+   + + V   +A RL ++ + + + +  +
Sbjct: 1   MRVLGVDPGLTRCGLGVVDGGVGRSITGVAVDVVRTPVEAEVAQRLLRIGDAVEEWLDTY 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RP+  AVE+VF   +    +   QA  +  L  A   +PV+ + P+ +K AV G G  DK
Sbjct: 61  RPDVVAVERVFSQHNVRTVMGTAQAGGVVALCAARRGLPVAFHTPSEVKAAVTGSGRADK 120

Query: 124 KQIHMMLKMLMPESFFKGK 142
            Q+  M+  L+  S     
Sbjct: 121 AQVTAMVTRLLGLSKKPSP 139


>gi|282897446|ref|ZP_06305448.1| Crossover junction endodeoxyribonuclease RuvC [Raphidiopsis brookii
           D9]
 gi|281198098|gb|EFA72992.1| Crossover junction endodeoxyribonuclease RuvC [Raphidiopsis brookii
           D9]
          Length = 192

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 66/143 (46%), Gaps = 8/143 (5%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDN-------LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDV 59
           I+G+DPGL   G+G + +   +       +  V  G I +     +  RL  L++ L  +
Sbjct: 31  ILGLDPGLAIVGFGAISLEQRSAKLSDTTITMVDFGVIRTPSDMEITQRLSTLFDDLHTL 90

Query: 60  IKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVG 119
           +   +P+  A+E++F  + A   + + QAR + +L     R+P  E+AP  IK+A+   G
Sbjct: 91  LDELQPDVVAIERLFFYRMANT-ILVAQARGVIMLVLGQRRLPYLEFAPPQIKQALTSYG 149

Query: 120 HGDKKQIHMMLKMLMPESFFKGK 142
             +K ++   +   +        
Sbjct: 150 KAEKIEVQEAVMRELDLEEIPQP 172


>gi|239939965|ref|ZP_04691902.1| Holliday junction resolvase [Streptomyces roseosporus NRRL 15998]
 gi|239986449|ref|ZP_04707113.1| Holliday junction resolvase [Streptomyces roseosporus NRRL 11379]
 gi|291443396|ref|ZP_06582786.1| holliday junction resolvase [Streptomyces roseosporus NRRL 15998]
 gi|291346343|gb|EFE73247.1| holliday junction resolvase [Streptomyces roseosporus NRRL 15998]
          Length = 246

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 54/156 (34%), Positives = 84/156 (53%), Gaps = 2/156 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G G+V+      L  +  G + +     L  RL  +  G+   +  +
Sbjct: 1   MRVLGVDPGLTRCGVGVVEGVAGRPLTMLGVGVVRTSSDAELGDRLVAVERGIEAWLDEY 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P   AVE+VF   +    +   QA AIA+L  A   IPV+ + P+ +K AV G G  +K
Sbjct: 61  SPGCVAVERVFAQHNVRTVMGTAQASAIAMLCAARRGIPVALHTPSEVKAAVTGSGRAEK 120

Query: 124 KQIHMMLKMLM-PESFFKGKDAADALAIAVCHAYHA 158
            Q+  M+  L+  ++  K  DAADALA+A+CH + A
Sbjct: 121 AQVGAMVTRLLRLDAPPKPADAADALALAICHIWRA 156


>gi|238063869|ref|ZP_04608578.1| crossover junction endodeoxyribonuclease ruvC [Micromonospora sp.
           ATCC 39149]
 gi|237885680|gb|EEP74508.1| crossover junction endodeoxyribonuclease ruvC [Micromonospora sp.
           ATCC 39149]
          Length = 175

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 57/167 (34%), Positives = 88/167 (52%), Gaps = 2/167 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNL-CFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G G+V+         ++   + +   + L  RL  L   LTD++   
Sbjct: 1   MRVLGVDPGLTRCGVGVVEGVPGRPCTLLAYYVVYTDPGEDLPLRLLHLDRSLTDLVAEH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RP+  AVE+VF   +    +   QA  IA+L+ A A +PV  Y P+ +K A+ G G  DK
Sbjct: 61  RPDAVAVERVFSQHNVRTVMGTAQASGIAVLAGARAGLPVQTYTPSEVKAAITGSGQADK 120

Query: 124 KQIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHANSGYYKIASQD 169
            Q+  M+  L+      K  DAADALA+A+CH +   +     A+ D
Sbjct: 121 AQMTTMVTRLLRLPEPPKPADAADALALAICHVWRGGTRSKLAAAAD 167


>gi|302866771|ref|YP_003835408.1| crossover junction endodeoxyribonuclease RuvC [Micromonospora
           aurantiaca ATCC 27029]
 gi|302569630|gb|ADL45832.1| crossover junction endodeoxyribonuclease RuvC [Micromonospora
           aurantiaca ATCC 27029]
          Length = 175

 Score =  158 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 57/158 (36%), Positives = 86/158 (54%), Gaps = 2/158 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNL-CFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G G+V+         V+   + +     LA RL  L   LT ++   
Sbjct: 1   MRVLGVDPGLTRCGVGVVEGVPGRPCTLVAYYVVYTDPEGDLALRLLHLDRSLTGLVAEH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RP+  AVE+VF   +    +   QA  +A+L+ A A +PV+ Y P+ +K AV G G  DK
Sbjct: 61  RPDAVAVERVFSQHNVRTVMGTAQASGVAVLAGARAGLPVTTYTPSEVKAAVTGSGQADK 120

Query: 124 KQIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHANS 160
           KQ+  M+  L+      K  DAADALA+A+CH +   +
Sbjct: 121 KQMTTMVTRLLRLPEPPKPADAADALALAICHVWRGGT 158


>gi|291280037|ref|YP_003496872.1| crossover junction endodeoxyribonuclease RuvC [Deferribacter
           desulfuricans SSM1]
 gi|290754739|dbj|BAI81116.1| crossover junction endodeoxyribonuclease RuvC [Deferribacter
           desulfuricans SSM1]
          Length = 166

 Score =  158 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 44/152 (28%), Positives = 78/152 (51%), Gaps = 3/152 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDV--AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
           + I GIDPGL +TG G++++    ++   V    + +    S   ++ ++ + L+  +K 
Sbjct: 1   MIIFGIDPGLNKTGVGVLELADNNNSFRCVDYTVLKNKSSLSTIDKIAEITDSLSKYVKR 60

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
           + P  AAVE+ F + +    + LG AR   I +     + V ++    IKK+V+G G  D
Sbjct: 61  YSPLYAAVEESFYSVNVKTAISLGMARGAIISTLLSHSVKVFQFTALQIKKSVVGYGKAD 120

Query: 123 KKQIHMMLKMLMPESFFKG-KDAADALAIAVC 153
           K Q+  M++M +  S      D +DALA  +C
Sbjct: 121 KNQVKKMVEMQLNISLDNVLNDVSDALACGIC 152


>gi|269126343|ref|YP_003299713.1| crossover junction endodeoxyribonuclease RuvC [Thermomonospora
           curvata DSM 43183]
 gi|268311301|gb|ACY97675.1| crossover junction endodeoxyribonuclease RuvC [Thermomonospora
           curvata DSM 43183]
          Length = 176

 Score =  158 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 46/133 (34%), Positives = 70/133 (52%), Gaps = 1/133 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G G+VD A G  L  V    I +     +A RL  +  G+  ++   
Sbjct: 1   MRVLGVDPGLTRCGVGVVDGAPGKPLHLVHVEVIRTSPDADIAERLLGIERGIEALLDEH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P+  AVE+VF   +    +   QA AIAI++ A   +PV+ + P+  K AV G G   K
Sbjct: 61  APDAVAVERVFAQHNVSTVMGTAQAGAIAIVAAARRGLPVALHTPSEAKAAVTGNGSAGK 120

Query: 124 KQIHMMLKMLMPE 136
            Q+ MM+  L+  
Sbjct: 121 AQVTMMVTRLLRL 133


>gi|297195495|ref|ZP_06912893.1| crossover junction endodeoxyribonuclease ruvC [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197722110|gb|EDY66018.1| crossover junction endodeoxyribonuclease ruvC [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 180

 Score =  158 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 56/156 (35%), Positives = 86/156 (55%), Gaps = 2/156 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G G+V+      L     G + +     L  RL  + +G+   +  +
Sbjct: 1   MRVLGVDPGLTRCGVGVVEGVAGRPLTMRGVGVVRTPPDAELGARLVAVEQGIERWLDEY 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RPE  AVE+VF   +    +   QA A+A+L  A   IPV+ + P+ +K AV G G  DK
Sbjct: 61  RPEFVAVERVFSQHNVRTVMGTAQASAVAMLCAARRGIPVALHTPSEVKAAVTGSGRADK 120

Query: 124 KQIHMMLKMLM-PESFFKGKDAADALAIAVCHAYHA 158
            Q+  M+  L+  ++  K  DAADALA+A+CH + A
Sbjct: 121 AQVGAMVTRLLRLDAPPKPADAADALALAICHIWRA 156


>gi|296170846|ref|ZP_06852407.1| crossover junction endoribonuclease subunit C [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295894502|gb|EFG74243.1| crossover junction endoribonuclease subunit C [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 184

 Score =  158 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 47/156 (30%), Positives = 82/156 (52%), Gaps = 2/156 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G  +V+   G ++  +    + +     LA RL  + + +   +   
Sbjct: 1   MRVMGVDPGLTRCGLSVVESGRGRSVVALDVDVVRTPSDAPLAKRLLAISDAVEHWLATH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +P+  A+E+VF   +    +   QA  +  L+ A   + V  + P+ +K AV G G  DK
Sbjct: 61  QPDVVAIERVFSQLNVSTVMGTAQAGGVVALAAAKRGVDVHFHTPSEVKAAVTGNGAADK 120

Query: 124 KQIHMML-KMLMPESFFKGKDAADALAIAVCHAYHA 158
            Q+  M+ K+L  ++     DAADALA+A+CH + A
Sbjct: 121 AQVTAMVTKILALQAKPTPADAADALALAICHCWRA 156


>gi|226357097|ref|YP_002786837.1| crossover junction endodeoxyribonuclease (Holliday junction
           resolvase) [Deinococcus deserti VCD115]
 gi|226319087|gb|ACO47083.1| putative crossover junction endodeoxyribonuclease ruvC (Holliday
           junction resolvase ruvC) [Deinococcus deserti VCD115]
          Length = 169

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 40/135 (29%), Positives = 70/135 (51%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M   + ++GIDPGL   G G+VD        +    + +     +  RL  ++E +T ++
Sbjct: 1   MLSDMIVLGIDPGLANLGLGLVDGDIRKARHLHHVCLTTESAWVMPRRLQYIHEEVTRLL 60

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             ++PE  A+E   + + A    K+GQA  +  L+ A A +P+  Y P  +KKA++G G 
Sbjct: 61  AEYQPEAVAIEDQILRRQADVAFKVGQAFGVVQLACAQAGVPIHSYGPMQVKKALVGTGR 120

Query: 121 GDKKQIHMMLKMLMP 135
            DK+Q+  M+K  + 
Sbjct: 121 ADKEQVIYMVKASLG 135


>gi|41407134|ref|NP_959970.1| Holliday junction resolvase [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|118464158|ref|YP_882657.1| Holliday junction resolvase [Mycobacterium avium 104]
 gi|81571427|sp|Q741Q2|RUVC_MYCPA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|166233268|sp|A0QIB9|RUVC_MYCA1 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|41395485|gb|AAS03353.1| RuvC [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|118165445|gb|ABK66342.1| crossover junction endodeoxyribonuclease RuvC [Mycobacterium avium
           104]
          Length = 188

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 45/156 (28%), Positives = 80/156 (51%), Gaps = 2/156 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G  +V+   G  +  +    + +     LA RL  + + +   +   
Sbjct: 1   MRVMGVDPGLTRCGLSVVESGRGRTVVALDVDVVRTPSDAPLAERLLSISDAVEHWLATH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +P+  A+E+VF   +    +   QA  +  L+ A   I V  + P+ +K AV G G  +K
Sbjct: 61  QPDVVAIERVFSQLNVTTVMGTAQAGGVVALAAAKRGIGVHFHTPSEVKAAVTGNGAANK 120

Query: 124 KQIHMMLKMLM-PESFFKGKDAADALAIAVCHAYHA 158
            Q+  M+  ++  ++     DAADALA+A+CH + A
Sbjct: 121 AQVTAMVTRILALQAKPTPADAADALALAICHCWRA 156


>gi|330466910|ref|YP_004404653.1| crossover junction endodeoxyribonuclease ruvc [Verrucosispora maris
           AB-18-032]
 gi|328809881|gb|AEB44053.1| crossover junction endodeoxyribonuclease ruvc [Verrucosispora maris
           AB-18-032]
          Length = 175

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 58/158 (36%), Positives = 84/158 (53%), Gaps = 2/158 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNL-CFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G G+V+         V+   I +     L  RL  L   LTD++   
Sbjct: 1   MRVLGVDPGLTRCGVGVVEGVPGRPCTLVAYYVIYTDPADELPTRLLHLDRSLTDLVAEH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RP+  AVE+VF   +    +   QA  IA+L+ A A +PV  Y P+ +K AV G G  DK
Sbjct: 61  RPDSVAVERVFSQHNVRTVMGTAQASGIAVLAGARAGLPVQTYTPSEVKAAVTGSGQADK 120

Query: 124 KQIHMMLKMLMPESFFK-GKDAADALAIAVCHAYHANS 160
            Q+  M+  L+  S      DAADALA+A+CH +   +
Sbjct: 121 AQMTAMVTRLLRLSEPPRPADAADALALAICHVWRGGT 158


>gi|67921282|ref|ZP_00514801.1| Crossover junction endoribonuclease [Crocosphaera watsonii WH 8501]
 gi|67857399|gb|EAM52639.1| Crossover junction endoribonuclease [Crocosphaera watsonii WH 8501]
          Length = 162

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 38/147 (25%), Positives = 68/147 (46%), Gaps = 1/147 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFV-SSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
            +GIDPGL   GW ++      L  +   GTI +  + S + RL ++   L+++++ ++P
Sbjct: 6   WLGIDPGLAIVGWAMLQENEQELPLIIDYGTIETNKQLSTSQRLVEIETDLSELLREFKP 65

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
           +  A+E  F N+   A   + QA  +  L         + +      K  +G G  +KK+
Sbjct: 66  QGIAIEMPFFNRTIKAAGGVMQALGVINLVCYRDSKIEAIFLHQASWKCHLGDGKANKKE 125

Query: 126 IHMMLKMLMPESFFKGKDAADALAIAV 152
           +  M+  L         D+ DA+AIA 
Sbjct: 126 VAEMVATLFDLETLPIDDSVDAIAIAY 152


>gi|262197093|ref|YP_003268302.1| crossover junction endodeoxyribonuclease RuvC [Haliangium ochraceum
           DSM 14365]
 gi|262080440|gb|ACY16409.1| crossover junction endodeoxyribonuclease RuvC [Haliangium ochraceum
           DSM 14365]
          Length = 168

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 45/139 (32%), Positives = 73/139 (52%), Gaps = 3/139 (2%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAG---DNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           +RI+G+DPG R  G+G+++V         +V  G + +     +  RL ++   LTDV+ 
Sbjct: 1   MRILGVDPGSRMCGYGVIEVGAQGPGACAYVECGVLSATRGAPMEQRLGEIACWLTDVVT 60

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
             RP   AVE VF +++  + L L QAR   +    +A +PV  YAP  +KK V G G  
Sbjct: 61  ELRPLVVAVEDVFTHQNVRSALALAQARGTVLAVAGMAGLPVYSYAPAVVKKTVTGRGRA 120

Query: 122 DKKQIHMMLKMLMPESFFK 140
            K+Q+ +M++ L+      
Sbjct: 121 PKEQVALMVQALVGLRRVP 139


>gi|117928552|ref|YP_873103.1| Holliday junction endonuclease RuvC [Acidothermus cellulolyticus
           11B]
 gi|187611410|sp|A0LUK7|RUVC_ACIC1 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|117649015|gb|ABK53117.1| Holliday junction endonuclease RuvC [Acidothermus cellulolyticus
           11B]
          Length = 178

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 44/139 (31%), Positives = 66/139 (47%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           MR   R++G+DPGL R G G+VD        V    + +     L  RL  L +GL   +
Sbjct: 8   MRSIRRVMGVDPGLTRCGIGVVDGYPGLARLVGVDVLHTPADAELGDRLAALEDGLVQWL 67

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
               P+  AVE+VF   +    +   QA A+A+L  A   +PV  + P+ +K AV G G 
Sbjct: 68  DRAAPDVVAVERVFSQHNVRTVMGTAQAGAVALLVAARRGVPVVWHTPSEVKAAVTGQGR 127

Query: 121 GDKKQIHMMLKMLMPESFF 139
             K Q+  M++ L+     
Sbjct: 128 AGKDQVAFMVRRLLRAPGL 146


>gi|282900755|ref|ZP_06308697.1| Crossover junction endodeoxyribonuclease RuvC [Cylindrospermopsis
           raciborskii CS-505]
 gi|281194555|gb|EFA69510.1| Crossover junction endodeoxyribonuclease RuvC [Cylindrospermopsis
           raciborskii CS-505]
          Length = 192

 Score =  157 bits (398), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 35/143 (24%), Positives = 67/143 (46%), Gaps = 8/143 (5%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDN-------LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDV 59
           I+G+DPGL   G+G + +   +       +  V  G I +     +  RLC L++ L  +
Sbjct: 31  ILGLDPGLAIVGFGAISLEQRSAKLSDTTITMVDFGVIHTPSDMEITQRLCTLFDDLHTL 90

Query: 60  IKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVG 119
           +   +P+  A+E++F  + A   + + QAR + +L     R+P  E+AP  IK+A+   G
Sbjct: 91  LDQLQPDVVAIERLFFYRMANT-ILVAQARGVIMLVLGQRRLPYLEFAPPQIKQALTSYG 149

Query: 120 HGDKKQIHMMLKMLMPESFFKGK 142
             +K ++   +   +        
Sbjct: 150 KAEKIEVQEAVMRELDLEEIPQP 172


>gi|227495490|ref|ZP_03925806.1| crossover junction endodeoxyribonuclease [Actinomyces coleocanis
           DSM 15436]
 gi|226831037|gb|EEH63420.1| crossover junction endodeoxyribonuclease [Actinomyces coleocanis
           DSM 15436]
          Length = 210

 Score =  157 bits (398), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 39/133 (29%), Positives = 69/133 (51%), Gaps = 1/133 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAG-DNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++GIDPG+ R G G+VDV        V      S  + +  FRL  + + +  VI  +
Sbjct: 1   MRVLGIDPGITRCGIGVVDVDAMRRTTLVHVEVARSDQKIATHFRLKTIADAIDRVIAQF 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +PE  A+E+VF  ++  +     Q    A++  A A +P++ + P+ +K AV G G  +K
Sbjct: 61  QPEVVAIERVFAQENLQSVTTTMQVMGAAMVCAARAGLPLAIHTPSEVKAAVTGNGVANK 120

Query: 124 KQIHMMLKMLMPE 136
            Q+  M+  ++  
Sbjct: 121 SQVQAMVARVLGL 133


>gi|37522869|ref|NP_926246.1| Holliday junction resolvase [Gloeobacter violaceus PCC 7421]
 gi|44888386|sp|Q7NG73|RUVC_GLOVI RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|35213871|dbj|BAC91241.1| crossover junction endodeoxyribonuclease [Gloeobacter violaceus PCC
           7421]
          Length = 173

 Score =  157 bits (398), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 37/140 (26%), Positives = 69/140 (49%), Gaps = 3/140 (2%)

Query: 4   SIRIIGIDPGLRRTGWGIVDVAGDNLCFV-SSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
            +RI+G+DPG+   G+G++D        V   G + +  + +   RL  +YE +  +   
Sbjct: 3   GMRILGLDPGVAILGYGVLDFFDSAPPVVCDYGIVQTSAKTAFEARLAAIYEDINSLFSA 62

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
            +P+  A+E++F  K     + + QAR + +L  A   +P  E++P  +K A+ G G  D
Sbjct: 63  HKPDLVAIEKLFFYKMGNT-ISVAQARGVVLLCAAQHGVPYVEFSPPQVKLALTGDGRAD 121

Query: 123 KKQIHMMLKM-LMPESFFKG 141
           K+ I   ++  L   +  K 
Sbjct: 122 KRAIQEAVQRELGLITMPKP 141


>gi|254775924|ref|ZP_05217440.1| Holliday junction resolvase [Mycobacterium avium subsp. avium ATCC
           25291]
          Length = 188

 Score =  157 bits (397), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 45/156 (28%), Positives = 80/156 (51%), Gaps = 2/156 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G  +V+   G  +  +    + +     LA RL  + + +   +   
Sbjct: 1   MRVMGVDPGLTRCGLSVVESGRGRTVVALDVDVVRTPSEAPLAERLLSISDAVEHWLATH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +P+  A+E+VF   +    +   QA  +  L+ A   I V  + P+ +K AV G G  +K
Sbjct: 61  QPDVVAIERVFSQLNVTTVMGTAQAGGVVALAAAKRGIGVHFHTPSEVKAAVTGNGAANK 120

Query: 124 KQIHMMLKMLM-PESFFKGKDAADALAIAVCHAYHA 158
            Q+  M+  ++  ++     DAADALA+A+CH + A
Sbjct: 121 AQVTAMVTRILALQAKPTPADAADALALAICHCWRA 156


>gi|126658545|ref|ZP_01729692.1| Holliday juction resolvase; RuvC [Cyanothece sp. CCY0110]
 gi|126620132|gb|EAZ90854.1| Holliday juction resolvase; RuvC [Cyanothece sp. CCY0110]
          Length = 162

 Score =  157 bits (397), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 39/147 (26%), Positives = 65/147 (44%), Gaps = 1/147 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFV-SSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
            +GIDPGL   GW I+  +   L  +   GTI +  + S + RL ++ E L +++  ++P
Sbjct: 6   WLGIDPGLAIVGWAILQESEQQLPLIIDYGTIETNKQLSTSQRLLEIEEDLGELLTEFKP 65

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
           +  A+E  F N+   A   + Q   +  L           +      K  +G G   KK+
Sbjct: 66  QGIAIEMPFFNRTIKAAGGVMQGLGVINLVCYREAKIEPIFLHQASWKCHLGNGKAKKKE 125

Query: 126 IHMMLKMLMPESFFKGKDAADALAIAV 152
           +  M+  L         D+ DA+AIA 
Sbjct: 126 VAEMIATLFNLDKLPIDDSVDAIAIAY 152


>gi|218780989|ref|YP_002432307.1| crossover junction endodeoxyribonuclease [Desulfatibacillum
           alkenivorans AK-01]
 gi|218762373|gb|ACL04839.1| Crossover junction endodeoxyribonuclease [Desulfatibacillum
           alkenivorans AK-01]
          Length = 168

 Score =  156 bits (396), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 49/168 (29%), Positives = 84/168 (50%), Gaps = 6/168 (3%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++++GIDPGL  TG  +V+     +   S GTI +     L  RL  +Y+ + +V +  R
Sbjct: 1   MKVLGIDPGLAATGLALVNGTSTQVFGYSFGTITTPPESPLTDRLIHIYDRIREVAEAER 60

Query: 65  PEEAAVEQVF-VNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           P+   VE +F + K   + + LG+     +++    RIPV E A   +KK + G G  DK
Sbjct: 61  PDLMVVEDIFSLGKYPKSGITLGKVTGAILVAGRHGRIPVREVAVREVKKILTGNGAADK 120

Query: 124 KQIHMMLK-MLMPESFFKGKDAADALAIAVCHAYHA----NSGYYKIA 166
            Q+   ++  L  E   +   A+DA+A+A+   Y       +G  +I+
Sbjct: 121 NQLERAVRQRLGREEAIRPSHASDAMALALIGLYRGDHYLRNGLDRIS 168


>gi|159026053|emb|CAO86294.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 161

 Score =  156 bits (396), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 49/157 (31%), Positives = 67/157 (42%), Gaps = 7/157 (4%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNL--CFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
            +GIDPGL   GW I+      L    V  GTI +    S A RL ++   L ++I  ++
Sbjct: 4   WLGIDPGLAIVGWAILR-DNSELVPILVDYGTIETSKNLSTAQRLIEIERDLKELIAEYK 62

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P E AVE  F N+   A   + QA  I  L           +      K  +G G   K 
Sbjct: 63  PGEIAVEMPFFNRQIKAAGGVLQALGIINLVSCRDGGIEPIFLHQASWKCHLGHGRATKA 122

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSG 161
           ++   +K L   +     DA DA+AIA    Y A SG
Sbjct: 123 EVAEQIKYLFGLTKMPINDAVDAIAIA----YAAFSG 155


>gi|240173172|ref|ZP_04751830.1| Holliday junction resolvase [Mycobacterium kansasii ATCC 12478]
          Length = 181

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 47/153 (30%), Positives = 78/153 (50%), Gaps = 2/153 (1%)

Query: 8   IGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           +G+DPGL R G  +V+   G +L  +    + +    +L+ RL  + E +   +   RP+
Sbjct: 1   MGVDPGLTRCGLSLVESGRGRDLVALDVDVVRTPSDTALSKRLLAINEAVEHWLDTHRPD 60

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+E+VF   +    +   QA  +  L+ A   I V  + P+ +K AV G G  DK Q+
Sbjct: 61  VLAIERVFSQLNVTTVMGTAQAGGVIALAAAKRDIDVHFHTPSEVKAAVTGNGAADKAQV 120

Query: 127 HMMLKMLMPE-SFFKGKDAADALAIAVCHAYHA 158
             M+  ++   +     DAADALA+A+CH + A
Sbjct: 121 TAMVTRILALQAKPTPADAADALALAICHCWRA 153


>gi|150005548|ref|YP_001300292.1| Holliday junction resolvase [Bacteroides vulgatus ATCC 8482]
 gi|149933972|gb|ABR40670.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides vulgatus
           ATCC 8482]
          Length = 155

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 41/129 (31%), Positives = 65/129 (50%), Gaps = 3/129 (2%)

Query: 34  SGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAI 93
            G I          +L +++E +  +I+ + P+E A+E  F  K+  + LKLG+A+ +A+
Sbjct: 3   MGVIDLRKYGDHYLKLRRIFERVVGIIEAYLPDELAIEAPFFGKNVQSMLKLGRAQGVAM 62

Query: 94  LSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESF---FKGKDAADALAI 150
            +     IP++EYAP  IK A+ G G   K+Q+  MLK ++           DA D LA 
Sbjct: 63  AAALSRDIPITEYAPLKIKMAITGNGQASKEQVADMLKRMLHIPESDMLPFMDATDGLAA 122

Query: 151 AVCHAYHAN 159
           A CH     
Sbjct: 123 AYCHYLQMG 131


>gi|166363327|ref|YP_001655600.1| holliday juction resolvase [Microcystis aeruginosa NIES-843]
 gi|166085700|dbj|BAG00408.1| holliday juction resolvase [Microcystis aeruginosa NIES-843]
          Length = 161

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 45/148 (30%), Positives = 63/148 (42%), Gaps = 3/148 (2%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNL--CFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
            +GIDPGL   GW I+      L    V  GTI +    S A RL ++   L ++I  ++
Sbjct: 4   WLGIDPGLAIVGWAILR-DNSELMPILVDYGTIETSKNLSTAQRLIEIERDLKELIAEYK 62

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P E AVE  F N+   A   + QA  I  L           +      K  +G G   K 
Sbjct: 63  PGEIAVEMPFFNRQIKAAGGVLQALGIINLVSCRDGGIEPIFLHQASWKCHLGHGKATKA 122

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAV 152
           ++   +K L   +     DA DA+AIA 
Sbjct: 123 EVAEQIKYLFGLTKMPINDAVDAIAIAY 150


>gi|28493234|ref|NP_787395.1| crossover junction endodeoxyribonuclease [Tropheryma whipplei str.
           Twist]
 gi|28572652|ref|NP_789432.1| crossover junction endodeoxyribonuclease RuvC [Tropheryma whipplei
           TW08/27]
 gi|28410784|emb|CAD67170.1| crossover junction endodeoxyribonuclease RuvC [Tropheryma whipplei
           TW08/27]
 gi|28476275|gb|AAO44364.1| crossover junction endodeoxyribonuclease [Tropheryma whipplei str.
           Twist]
          Length = 183

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 38/153 (24%), Positives = 75/153 (49%), Gaps = 2/153 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGD-NLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +RI+ +DPGL   G  +V+  G  +L  ++     +    S   R+ ++ + L  +++ +
Sbjct: 1   MRIMAVDPGLTNCGVAVVNATGPLSLELLAVKVFHTDRSLSFENRIGKIGDSLLSMLEEF 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P+  A+E+VF   +      +     +A          ++ + P+ IK ++ G G+  K
Sbjct: 61  SPDLFALEKVFAQHNLSTVSGVAGVIGVASYLCYKHGTHIAFHTPSEIKASICGYGNAKK 120

Query: 124 KQIHMML-KMLMPESFFKGKDAADALAIAVCHA 155
            QI  M+ ++ + +      DA+DALA+AVC A
Sbjct: 121 DQIRSMVNRVFLSQDIPLRHDASDALALAVCCA 153


>gi|239932396|ref|ZP_04689349.1| Holliday junction resolvase [Streptomyces ghanaensis ATCC 14672]
          Length = 176

 Score =  155 bits (394), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 45/133 (33%), Positives = 70/133 (52%), Gaps = 1/133 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G G+V+      L  +  G + +     L  RL  L +GL   ++  
Sbjct: 1   MRVLGVDPGLTRCGVGVVEGVAGRPLTMLGVGVVRTPAGADLGHRLVVLEQGLEQWLEEH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RPE  AVE+VF   +    +   QA A+A+L  +   IPV+ + P+ +K AV G G  DK
Sbjct: 61  RPEYVAVERVFSQHNVRTVMGTAQASAVALLCASRRGIPVALHTPSEVKAAVTGSGRADK 120

Query: 124 KQIHMMLKMLMPE 136
            Q+  M+  L+  
Sbjct: 121 AQVGAMVTRLLRL 133


>gi|56750749|ref|YP_171450.1| Holliday junction resolvase [Synechococcus elongatus PCC 6301]
 gi|81299609|ref|YP_399817.1| Holliday junction resolvase [Synechococcus elongatus PCC 7942]
 gi|81596412|sp|Q5N440|RUVC_SYNP6 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|123557188|sp|Q31Q39|RUVC_SYNE7 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|56685708|dbj|BAD78930.1| holliday junction resolvase RuvC [Synechococcus elongatus PCC 6301]
 gi|81168490|gb|ABB56830.1| Holliday junction endonuclease RuvC [Synechococcus elongatus PCC
           7942]
          Length = 161

 Score =  155 bits (394), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 36/140 (25%), Positives = 66/140 (47%), Gaps = 4/140 (2%)

Query: 6   RIIGIDPGLRRTGWGIV---DVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
           RI+G+DPGL   G+G +   D    +L  +  G I +     +  RL  +Y+ L  +I  
Sbjct: 4   RILGLDPGLAIVGFGALLCPDSRQGSLELLDFGVISTPAGAEIGDRLETIYQDLHQLIDL 63

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
            +P+  AVE++F  +     + + QAR + +L     R+P  E+ P  +K+A+ G G+  
Sbjct: 64  VQPDAVAVEKLFFYRMGNT-IAVAQARGVLMLVLRQRRLPYCEFTPAQVKQALTGYGNAP 122

Query: 123 KKQIHMMLKMLMPESFFKGK 142
           K  +   ++  +        
Sbjct: 123 KLAVQQAVQRELQLDAIPRP 142


>gi|320332684|ref|YP_004169395.1| Crossover junction endodeoxyribonuclease ruvC [Deinococcus
           maricopensis DSM 21211]
 gi|319753973|gb|ADV65730.1| Crossover junction endodeoxyribonuclease ruvC [Deinococcus
           maricopensis DSM 21211]
          Length = 164

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 42/131 (32%), Positives = 71/131 (54%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + ++GIDPGL   G G+VD        + S  + +     L  RL  L+E ++ +I+ + 
Sbjct: 1   MIVLGIDPGLANLGIGVVDGDARKARHLHSVCLFTASAWELPRRLRYLHEEVSRLIEVFE 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           PE  A+E+ ++ K A    K+GQA  +  L+ A A IP+  Y P  +K+ ++G G  DK+
Sbjct: 61  PEAVAIEEQYLRKQADVAFKVGQAFGVVQLACAQADIPIYTYGPMQVKQTIVGTGRADKE 120

Query: 125 QIHMMLKMLMP 135
           Q+  M+K  + 
Sbjct: 121 QVIYMVKATLG 131


>gi|332295725|ref|YP_004437648.1| Crossover junction endodeoxyribonuclease ruvC [Thermodesulfobium
           narugense DSM 14796]
 gi|332178828|gb|AEE14517.1| Crossover junction endodeoxyribonuclease ruvC [Thermodesulfobium
           narugense DSM 14796]
          Length = 158

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 40/149 (26%), Positives = 76/149 (51%), Gaps = 3/149 (2%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + I+GIDPG+   G+ IV    + +   S G I      S   RLC+++E L+ +I  + 
Sbjct: 1   MIILGIDPGVADIGYAIVKKD-NKIKLESCGLIQ-VHGCSQNQRLCRIFEELSFIIDKYN 58

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  ++E++F  K+    + + + R +  L  +   I   EY P  +K+ + G G  +K 
Sbjct: 59  PDACSIEKIFYFKNQKTVMDVSEGRGVIKLVLSRKNIQYREYTPKEVKRLISGNGLANKD 118

Query: 125 QIHMMLKMLMPESFFK-GKDAADALAIAV 152
           Q+   ++ ++  +F     D  DA+A+A+
Sbjct: 119 QVRRSVEYILGSNFNNLQDDVTDAIALAL 147


>gi|298492708|ref|YP_003722885.1| crossover junction endodeoxyribonuclease RuvC ['Nostoc azollae'
           0708]
 gi|298234626|gb|ADI65762.1| crossover junction endodeoxyribonuclease RuvC ['Nostoc azollae'
           0708]
          Length = 163

 Score =  155 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 37/147 (25%), Positives = 70/147 (47%), Gaps = 10/147 (6%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIV-------DVAGDNLCFVSSGTIVSCVRQSLAFRLCQLY 53
           M K  RI+G+DPGL   G+G +        V    +  +  G I +     ++ RL  L+
Sbjct: 1   MEK--RILGLDPGLAIIGFGAISWNQSQAKVQYTTVKMLDFGVIRTSADMEMSQRLSTLF 58

Query: 54  EGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKK 113
           + L  ++ + +P+  A+E++F  + A   + + QAR + +L     ++P  E+AP  IK+
Sbjct: 59  DDLHTLMDDLQPDLVAIEKLFFYRMANT-IVVAQARGVLMLVLGQRKLPYVEFAPPQIKQ 117

Query: 114 AVIGVGHGDKKQIHMMLKMLMPESFFK 140
           A+   G  DK ++   +   +      
Sbjct: 118 ALTNYGKADKGEVQDAVMRELDLDEIP 144


>gi|304436499|ref|ZP_07396473.1| crossover junction endoribonuclease subunit C [Selenomonas sp. oral
           taxon 149 str. 67H29BP]
 gi|304370545|gb|EFM24196.1| crossover junction endoribonuclease subunit C [Selenomonas sp. oral
           taxon 149 str. 67H29BP]
          Length = 126

 Score =  155 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 35/123 (28%), Positives = 67/123 (54%), Gaps = 1/123 (0%)

Query: 43  QSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIP 102
             +  RL +++  L ++I+ +RP+   VEQ+F N++    + +GQAR + +L+ A   + 
Sbjct: 1   MPVEQRLLKIHTVLDELIQKYRPDAMGVEQLFFNRNVTTAIPVGQARGVVLLAAAKNNLL 60

Query: 103 VSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESFFK-GKDAADALAIAVCHAYHANSG 161
           + E  P  +K++V G G   K+Q+  M+  L+         D ADALA+A+  A+  ++ 
Sbjct: 61  LIERTPLQVKQSVTGYGKATKEQVIYMVTKLLHLPEAPHPDDTADALAVAISAAHCMDTI 120

Query: 162 YYK 164
             +
Sbjct: 121 ALR 123


>gi|283853682|ref|ZP_06370913.1| crossover junction endodeoxyribonuclease RuvC [Desulfovibrio sp.
           FW1012B]
 gi|283570923|gb|EFC18952.1| crossover junction endodeoxyribonuclease RuvC [Desulfovibrio sp.
           FW1012B]
          Length = 169

 Score =  155 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 49/133 (36%), Positives = 78/133 (58%)

Query: 2   RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
            + + ++G+DPG R TG+G+V      L  V++G + +        RL  +Y  + ++I 
Sbjct: 4   SQEMMVLGLDPGSRVTGYGVVRERSGVLELVAAGVVRTGSENDFPTRLGVIYTAVAELIG 63

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
              P EAAVE VFV+K+A   LKLGQAR  A+ + A+A +PV  Y P  IKK+++G G  
Sbjct: 64  RLAPIEAAVENVFVSKNAGTALKLGQARGAALAACAVAGLPVFSYEPTIIKKSLVGTGRA 123

Query: 122 DKKQIHMMLKMLM 134
           +K Q+  M+  ++
Sbjct: 124 EKSQVAFMVGRVL 136


>gi|227496224|ref|ZP_03926521.1| crossover junction endodeoxyribonuclease RuvC [Actinomyces
           urogenitalis DSM 15434]
 gi|226834239|gb|EEH66622.1| crossover junction endodeoxyribonuclease RuvC [Actinomyces
           urogenitalis DSM 15434]
          Length = 167

 Score =  154 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 49/152 (32%), Positives = 79/152 (51%), Gaps = 2/152 (1%)

Query: 8   IGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           +G+DPGL R G G VD+        V  G + +    S   RL  + + L D I    P 
Sbjct: 2   LGVDPGLTRCGLGCVDIDARRRARLVEVGVVRTPPSMSPELRLAAIADALDDWIARLGPT 61

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             +VE+VF   +  + + + Q   + +++ A A + V+++ P+  K AV G G  DK Q+
Sbjct: 62  SVSVERVFAQDNLRSVISVAQVMGVVMVAGARAGLEVAQHTPSEAKAAVTGSGTADKPQV 121

Query: 127 HMML-KMLMPESFFKGKDAADALAIAVCHAYH 157
             M+ ++L  ++  K  DAADALA A+CH + 
Sbjct: 122 QAMVARILGLDAPPKPADAADALAQAICHGWR 153


>gi|326382126|ref|ZP_08203818.1| Holliday junction resolvase [Gordonia neofelifaecis NRRL B-59395]
 gi|326198856|gb|EGD56038.1| Holliday junction resolvase [Gordonia neofelifaecis NRRL B-59395]
          Length = 193

 Score =  154 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 49/153 (32%), Positives = 79/153 (51%), Gaps = 2/153 (1%)

Query: 8   IGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           +G+DPGL R G  +V+  AG  +  +    + +     LA RL  ++ G    +    P+
Sbjct: 1   MGVDPGLTRCGIALVESGAGRKVTALDVDVVRTPADMDLAERLLAIHVGAVHWLDTHGPD 60

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+E+VF  +     +   QA  +  L+ A   IPV  + P+ +K AV G G  DK Q+
Sbjct: 61  VVAIERVFAQRQVSTAMGTAQAAGVIALAAAQREIPVRFHTPSEVKAAVTGSGRADKAQV 120

Query: 127 HMMLKMLMP-ESFFKGKDAADALAIAVCHAYHA 158
            MM+  ++  ++  K  DAADALA+A+CH +  
Sbjct: 121 TMMVTRILGMQTPPKPADAADALALAICHCWRG 153


>gi|33240597|ref|NP_875539.1| Holliday junction resolvasome endonuclease subunit [Prochlorococcus
           marinus subsp. marinus str. CCMP1375]
 gi|44888419|sp|Q7VBE8|RUVC_PROMA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|33238125|gb|AAQ00192.1| Holliday junction resolvasome endonuclease subunit [Prochlorococcus
           marinus subsp. marinus str. CCMP1375]
          Length = 155

 Score =  154 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 42/139 (30%), Positives = 72/139 (51%), Gaps = 2/139 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAG-DNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           + I+GIDPGL R G+G+++V     +  +  G I +   Q    R+ ++ + L  +I+ W
Sbjct: 1   MVILGIDPGLARVGYGLIEVNNQRQVKMLDCGIIKTNKNQYEGERMVEIAKDLRVLIRKW 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +P  AAVE+ F  K    T+ + QAR + I++ A  ++P+ E+ P  IK AV G GH  K
Sbjct: 61  KPGLAAVEKFFFYKS-STTISVVQARGVLIMTLARFKVPIVEFPPMQIKLAVAGSGHAKK 119

Query: 124 KQIHMMLKMLMPESFFKGK 142
            ++   +   +        
Sbjct: 120 DEVLEAVMRELRLKVPPRP 138


>gi|172034980|ref|YP_001801481.1| Holliday junction resolvase [Cyanothece sp. ATCC 51142]
 gi|171696434|gb|ACB49415.1| Holliday junction resolvase [Cyanothece sp. ATCC 51142]
          Length = 174

 Score =  154 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 38/147 (25%), Positives = 64/147 (43%), Gaps = 1/147 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFV-SSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
            +GIDPGL   GW ++  +   L  +   GTI +  + S + RL ++   L +++  + P
Sbjct: 18  WLGIDPGLAIVGWAMLQESEQQLPLIIDYGTIETNKQLSTSQRLLEIESDLGELLTEFEP 77

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
           +  A+E  F N+   A   + QA  +  L           +      K  +G G   KK+
Sbjct: 78  QGIAIEMPFFNRTIKAAGGVMQALGVINLVCYRETNIEPIFLHQASWKCHLGDGKAKKKE 137

Query: 126 IHMMLKMLMPESFFKGKDAADALAIAV 152
           +  M+  L         D+ DA+AIA 
Sbjct: 138 VAQMITTLFNLDKLPIDDSVDAIAIAY 164


>gi|289674669|ref|ZP_06495559.1| Holliday junction resolvase [Pseudomonas syringae pv. syringae FF5]
          Length = 137

 Score =  154 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 47/117 (40%), Positives = 74/117 (63%)

Query: 44  SLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPV 103
            L  RL  +Y G+ +VIK + P    +E+VF+ ++A + LKLGQAR  AI++ A   + +
Sbjct: 3   ELHERLQIVYRGVREVIKTYGPVTMGIEKVFMARNADSALKLGQARGAAIVAGAEEALEI 62

Query: 104 SEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           +EY    +K+AV G G  +K+Q+ MM+  L+  +     DA+DALAIA+CHA+  +S
Sbjct: 63  AEYTATQVKQAVAGTGGANKEQVMMMVMHLLKLTQKPQIDASDALAIALCHAHTRSS 119


>gi|227875449|ref|ZP_03993590.1| crossover junction endodeoxyribonuclease [Mobiluncus mulieris ATCC
           35243]
 gi|269977299|ref|ZP_06184272.1| crossover junction endodeoxyribonuclease RuvC [Mobiluncus mulieris
           28-1]
 gi|306818761|ref|ZP_07452483.1| crossover junction endoribonuclease subunit C [Mobiluncus mulieris
           ATCC 35239]
 gi|307700732|ref|ZP_07637757.1| crossover junction endodeoxyribonuclease RuvC [Mobiluncus mulieris
           FB024-16]
 gi|227844003|gb|EEJ54171.1| crossover junction endodeoxyribonuclease [Mobiluncus mulieris ATCC
           35243]
 gi|269934602|gb|EEZ91163.1| crossover junction endodeoxyribonuclease RuvC [Mobiluncus mulieris
           28-1]
 gi|304648447|gb|EFM45750.1| crossover junction endoribonuclease subunit C [Mobiluncus mulieris
           ATCC 35239]
 gi|307613727|gb|EFN92971.1| crossover junction endodeoxyribonuclease RuvC [Mobiluncus mulieris
           FB024-16]
          Length = 209

 Score =  154 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 40/137 (29%), Positives = 68/137 (49%), Gaps = 1/137 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNL-CFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++GIDPG+ R G G+VD+    +   V    I S    +  FRL ++ EG+   I  +
Sbjct: 1   MRVLGIDPGITRCGVGVVDIDVSRVASLVYVAVIRSEPNLATQFRLLKISEGIAATITRF 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            PE  A+E+ F  ++  +     QA  +A+     A +PV+ + P+ +K AV G G   K
Sbjct: 61  SPEIVALERPFAKENRQSVTTTMQAMGVAMAEAGRAGLPVALHTPSEVKAAVSGNGAATK 120

Query: 124 KQIHMMLKMLMPESFFK 140
            Q+  M+  ++      
Sbjct: 121 AQVEAMIARILRLDKPP 137


>gi|254430887|ref|ZP_05044590.1| crossover junction endodeoxyribonuclease RuvC [Cyanobium sp. PCC
           7001]
 gi|197625340|gb|EDY37899.1| crossover junction endodeoxyribonuclease RuvC [Cyanobium sp. PCC
           7001]
          Length = 160

 Score =  154 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 39/144 (27%), Positives = 73/144 (50%), Gaps = 7/144 (4%)

Query: 5   IRIIGIDPGLRRTGWGIVDVA------GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTD 58
           +RI+GIDPGL R G+G+++V             +  G + +   +S   R+ ++   L  
Sbjct: 1   MRILGIDPGLARVGYGVIEVQEQPGATAQPQQLLDCGILRTDAGRSEGERMVEIAADLRV 60

Query: 59  VIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGV 118
           +++ W+P+ A VE+ F  +    T+ + QAR + I++ A  ++PV E  P  IK+A+ G 
Sbjct: 61  LLRRWQPQLAVVEKFFFYRS-STTIAVVQARGVVIMTLARFQVPVMELPPMQIKQALTGN 119

Query: 119 GHGDKKQIHMMLKMLMPESFFKGK 142
           GH +K ++   +   +        
Sbjct: 120 GHAEKAEVLEAVMRELALEAPPRP 143


>gi|311113690|ref|YP_003984912.1| crossover junction endoribonuclease subunit C [Rothia dentocariosa
           ATCC 17931]
 gi|310945184|gb|ADP41478.1| crossover junction endoribonuclease subunit C [Rothia dentocariosa
           ATCC 17931]
          Length = 221

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 33/138 (23%), Positives = 65/138 (47%), Gaps = 1/138 (0%)

Query: 4   SIRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
           + RI+G+DPGL R G  ++D+       F++ G   +   + L  R+ +++      +  
Sbjct: 20  ATRIMGVDPGLTRCGLSMIDMTANRKASFINVGIAGTAAAEPLDERILRIFTVTQTWLDT 79

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
           ++P+  A+E++F  +     +    A    I + A+  IPV  + P+ +K AV G G  D
Sbjct: 80  YQPDALAIERIFAQEQVNTVIGTAHASGAVISAAAVRGIPVFFHTPSEVKAAVTGSGRAD 139

Query: 123 KKQIHMMLKMLMPESFFK 140
           K  +  M+  ++      
Sbjct: 140 KASVGRMVTKILGLEKIP 157


>gi|171911217|ref|ZP_02926687.1| Holliday junction resolvase [Verrucomicrobium spinosum DSM 4136]
          Length = 174

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 47/167 (28%), Positives = 83/167 (49%), Gaps = 1/167 (0%)

Query: 2   RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
              +RI+ +DP LR TGW ++   G     ++ G I +  +   +  L  + E L++VIK
Sbjct: 5   AAPVRILAVDPALRNTGWAVLQHEGRTTTALAYGVIQNPAKLLTSGCLVAIREQLSEVIK 64

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
            + P   AVE     +     + LG  R   +++ A   +P+ +YAP  +K+A +G G  
Sbjct: 65  KFGPTSCAVESTIYVQSYKTAITLGSVRGAVLIAAAEHGLPIYDYAPREVKQAAVGKGAA 124

Query: 122 DKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
            K+Q+  M++ ++        DAADALA+ + H   A +G   +  +
Sbjct: 125 AKEQVAFMMRSMLRLRETPPSDAADALAVGLAHI-QATAGALSVGRE 170


>gi|107100422|ref|ZP_01364340.1| hypothetical protein PaerPA_01001447 [Pseudomonas aeruginosa PACS2]
 gi|313105852|ref|ZP_07792115.1| Holliday junction resolvase RuvC [Pseudomonas aeruginosa 39016]
 gi|310878617|gb|EFQ37211.1| Holliday junction resolvase RuvC [Pseudomonas aeruginosa 39016]
          Length = 128

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 43/110 (39%), Positives = 70/110 (63%)

Query: 51  QLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNT 110
            ++  + +VI+   P   ++EQVF+ ++A + LKLGQAR  AI++     + V+EY  + 
Sbjct: 1   MVFRSVREVIRTHGPTALSIEQVFMARNADSALKLGQARGAAIVAAMEEGLSVAEYTASQ 60

Query: 111 IKKAVIGVGHGDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           +K+AV+G G  DK+Q+ MM+  L+  +     DA+DALAIA+CHA+   S
Sbjct: 61  VKQAVVGTGGADKQQVQMMVMHLLKLTQKPQIDASDALAIALCHAHTQQS 110


>gi|158522218|ref|YP_001530088.1| crossover junction endodeoxyribonuclease [Desulfococcus oleovorans
           Hxd3]
 gi|158511044|gb|ABW68011.1| Crossover junction endodeoxyribonuclease [Desulfococcus oleovorans
           Hxd3]
          Length = 161

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 45/150 (30%), Positives = 78/150 (52%), Gaps = 2/150 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +++IGIDPGL  TG GIV      +   S G I +    SL  RL +++  + D++++ +
Sbjct: 2   VKVIGIDPGLADTGVGIVKGCDGRVSGYSFGCIQTSKNDSLQCRLHRIFSNVQDLLRDEK 61

Query: 65  PEEAAVEQVFV-NKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           P+   VE VF   K  V+ + LG+   + +L+     +   +     IK+ V G G+  K
Sbjct: 62  PDVMVVEDVFFLKKYPVSGIVLGEVTGVILLAGFQENVKAVKVPVREIKQVVTGNGNAGK 121

Query: 124 KQIHMML-KMLMPESFFKGKDAADALAIAV 152
           KQ+   + + L  +   +   A+DALA+A+
Sbjct: 122 KQLGEAVSRFLGHDGPIRPDHASDALALAI 151


>gi|87308914|ref|ZP_01091052.1| crossover junction endodeoxyribonuclease ruvC [Blastopirellula
           marina DSM 3645]
 gi|87288257|gb|EAQ80153.1| crossover junction endodeoxyribonuclease ruvC [Blastopirellula
           marina DSM 3645]
          Length = 147

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 41/140 (29%), Positives = 74/140 (52%), Gaps = 2/140 (1%)

Query: 22  VDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNK-DAV 80
           ++V    +  + +G +    R SL  R+ ++Y+G+ DVI   +P+  A+EQ++ +     
Sbjct: 2   IEVQNRRIRIIEAGVVRGKTRGSLPARVREIYDGVRDVITTLQPQTMAIEQLYSHYERPK 61

Query: 81  ATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKM-LMPESFF 139
             + +G AR +  L+   A +P+  Y+   IKK + G G   K Q+ + ++  L      
Sbjct: 62  TAIIMGHARGVLCLAAEQAGMPIHHYSATQIKKLLTGSGRAPKNQVQLSVQRELSLPEIP 121

Query: 140 KGKDAADALAIAVCHAYHAN 159
           +  D ADALA+A+CH Y A+
Sbjct: 122 EPPDVADALAVALCHYYLAS 141


>gi|296139643|ref|YP_003646886.1| crossover junction endodeoxyribonuclease RuvC [Tsukamurella
           paurometabola DSM 20162]
 gi|296027777|gb|ADG78547.1| crossover junction endodeoxyribonuclease RuvC [Tsukamurella
           paurometabola DSM 20162]
          Length = 215

 Score =  153 bits (389), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 35/135 (25%), Positives = 64/135 (47%), Gaps = 1/135 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G+ +V+  +G  +  +    + +     L  RL  ++      +   
Sbjct: 1   MRVMGVDPGLTRCGFSVVETGSGRKVVALDVDVVRTPSTMPLPERLLAVWTAAEFWMDTH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RP+  AVE+VF   +    +   QA  +  L+ A   I V  + P+ +K AV G G+  K
Sbjct: 61  RPDVIAVERVFAQHNVSTAMGTAQAGGVVALAAARRGIDVHFHTPSEVKAAVTGNGNAGK 120

Query: 124 KQIHMMLKMLMPESF 138
            Q+  M+  ++    
Sbjct: 121 AQVTAMITKILGLQK 135


>gi|262165956|ref|ZP_06033693.1| crossover junction endodeoxyribonuclease RuvC [Vibrio mimicus
           VM223]
 gi|262025672|gb|EEY44340.1| crossover junction endodeoxyribonuclease RuvC [Vibrio mimicus
           VM223]
          Length = 122

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 47/113 (41%), Positives = 72/113 (63%), Gaps = 1/113 (0%)

Query: 56  LTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAV 115
           ++++I  ++P+  A+EQVF+ K+A + LKLGQAR  AI++   A +PV EYA   IK+AV
Sbjct: 1   MSEIITQFQPDAFAIEQVFMAKNADSALKLGQARGSAIVAAVNANLPVYEYAARLIKQAV 60

Query: 116 IGVGHGDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
           +G G  DK Q+  M++ ++        DAADAL +A+CHA + N     +A Q
Sbjct: 61  VGTGAADKSQVQHMVQQMLKLPGKPQADAADALGVAICHA-NTNKTLIALAGQ 112


>gi|327398527|ref|YP_004339396.1| crossover junction endodeoxyribonuclease RuvC [Hippea maritima DSM
           10411]
 gi|327181156|gb|AEA33337.1| crossover junction endodeoxyribonuclease RuvC [Hippea maritima DSM
           10411]
          Length = 154

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 45/156 (28%), Positives = 75/156 (48%), Gaps = 4/156 (2%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + I+G+DPG   T  G +D             I    + S   ++  ++E L + IKN++
Sbjct: 1   MLILGVDPGSSITACGFIDPTTKKT---DFDFIKFKQKTSQEEKIFGVFEFLDNAIKNFK 57

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P E  VE  F + +  + + L + +A  I++     + V +Y P  IK+A+ G G  DK 
Sbjct: 58  PNEVVVESPFYSVNIKSAMVLSEIKAAVIIAAKQNNLKVFQYTPRQIKQAICGYGAADKN 117

Query: 125 QIHMML-KMLMPESFFKGKDAADALAIAVCHAYHAN 159
           Q+  +L K L      +  D +DALA+A+ H Y   
Sbjct: 118 QVRFVLEKTLNINLKDEPLDVSDALAVALTHIYTKG 153


>gi|222099064|ref|YP_002533632.1| Crossover junction endodeoxyribonuclease ruvC [Thermotoga
           neapolitana DSM 4359]
 gi|221571454|gb|ACM22266.1| Crossover junction endodeoxyribonuclease ruvC [Thermotoga
           neapolitana DSM 4359]
          Length = 170

 Score =  153 bits (388), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 41/138 (29%), Positives = 75/138 (54%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+G+DPG    G GI++++G+ +  V  G I +        RL Q++E    +++ + 
Sbjct: 6   LRILGVDPGYGIVGIGIIEISGNRISHVFHGAIETSKDLPRGKRLKQIHEEFLRILEKFS 65

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+E A+E +F  K+    + +G+AR + +L+     +PV EYAPN +K ++ G G   K+
Sbjct: 66  PDECAMETLFFVKNVTTAIGVGEARGVILLALEEKGVPVFEYAPNEVKISLTGYGRASKR 125

Query: 125 QIHMMLKMLMPESFFKGK 142
           Q+   +K  +  S     
Sbjct: 126 QVQENVKRFLGLSEIPRP 143


>gi|291440763|ref|ZP_06580153.1| holliday junction resolvase [Streptomyces ghanaensis ATCC 14672]
 gi|291343658|gb|EFE70614.1| holliday junction resolvase [Streptomyces ghanaensis ATCC 14672]
          Length = 188

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 45/135 (33%), Positives = 71/135 (52%), Gaps = 1/135 (0%)

Query: 3   KSIRIIGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
            ++R++G+DPGL R G G+V+      L  +  G + +     L  RL  L +GL   ++
Sbjct: 11  SAVRVLGVDPGLTRCGVGVVEGVAGRPLTMLGVGVVRTPAGADLGHRLVVLEQGLEQWLE 70

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
             RPE  AVE+VF   +    +   QA A+A+L  +   IPV+ + P+ +K AV G G  
Sbjct: 71  EHRPEYVAVERVFSQHNVRTVMGTAQASAVALLCASRRGIPVALHTPSEVKAAVTGSGRA 130

Query: 122 DKKQIHMMLKMLMPE 136
           DK Q+  M+  L+  
Sbjct: 131 DKAQVGAMVTRLLRL 145


>gi|296270038|ref|YP_003652670.1| crossover junction endodeoxyribonuclease RuvC [Thermobispora
           bispora DSM 43833]
 gi|296092825|gb|ADG88777.1| crossover junction endodeoxyribonuclease RuvC [Thermobispora
           bispora DSM 43833]
          Length = 193

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 52/159 (32%), Positives = 85/159 (53%), Gaps = 2/159 (1%)

Query: 6   RIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           R++G+DPGL R G G V+   G  L  V++G + +     +  RL  +   +   +   R
Sbjct: 7   RVLGVDPGLTRCGLGAVEGRPGAPLRLVAAGVVRTSADDDIGTRLLAIEREIERWLDEVR 66

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P   AVE+VF   +    +   QA AIAI+  A   +PV+ + P+ +K A+ G G   K+
Sbjct: 67  PSTVAVERVFAQHNVRTVMGTAQAAAIAIVCAARRGLPVALHTPSEVKAAITGNGDAGKR 126

Query: 125 QIHMMLKMLM-PESFFKGKDAADALAIAVCHAYHANSGY 162
           Q+  M+  L+  ++  K  DAADALA+A+CH +   + +
Sbjct: 127 QVGAMVTRLLRLDAMPKPADAADALALAICHVWRGGAQH 165


>gi|294055497|ref|YP_003549155.1| crossover junction endodeoxyribonuclease RuvC [Coraliomargarita
           akajimensis DSM 45221]
 gi|293614830|gb|ADE54985.1| crossover junction endodeoxyribonuclease RuvC [Coraliomargarita
           akajimensis DSM 45221]
          Length = 165

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 49/152 (32%), Positives = 80/152 (52%), Gaps = 1/152 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           ++GIDP LR +G+ +V+  G+  +  + + T+      S+   L  +   + D I   + 
Sbjct: 9   VLGIDPSLRGSGFAVVEYRGNQQVRLLEATTLHLKRDLSMPECLGAIGNQVEDFIDQHQI 68

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
           E  AVEQ    ++      LG AR  AI + A+  +PV EYAP  +K+AV+G+G   K+Q
Sbjct: 69  EHVAVEQTIYVQNFQTAQVLGAARGAAIAAAAMRGLPVFEYAPLRVKQAVVGMGRASKEQ 128

Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYH 157
           +   +  L      K  D +DA A+A+CHA+ 
Sbjct: 129 VARTVHTLTGVDVGKRYDESDAAAVALCHAFT 160


>gi|329938966|ref|ZP_08288340.1| Holliday junction resolvase [Streptomyces griseoaurantiacus M045]
 gi|329301851|gb|EGG45744.1| Holliday junction resolvase [Streptomyces griseoaurantiacus M045]
          Length = 186

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 44/133 (33%), Positives = 70/133 (52%), Gaps = 1/133 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G G+V+      L  +  G + +     L  RL  + +G+ + +   
Sbjct: 1   MRVLGVDPGLTRCGVGVVEGVPGRPLTMLGVGVVRTPADAELGHRLVAVEQGIEEWLDAH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RPE  AVE+VF   +    +   QA A+A+L  A   IPV+ + P+ +K AV G G  DK
Sbjct: 61  RPEYVAVERVFSQHNVRTVMGTAQASAVAMLCAARRGIPVALHTPSEVKAAVTGSGRADK 120

Query: 124 KQIHMMLKMLMPE 136
            Q+  M+  L+  
Sbjct: 121 AQVGAMVTRLLRL 133


>gi|149923022|ref|ZP_01911440.1| crossover junction endodeoxyribonuclease RuvC [Plesiocystis
           pacifica SIR-1]
 gi|149816143|gb|EDM75653.1| crossover junction endodeoxyribonuclease RuvC [Plesiocystis
           pacifica SIR-1]
          Length = 190

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 52/164 (31%), Positives = 82/164 (50%), Gaps = 10/164 (6%)

Query: 6   RIIGIDPGLRRTGWGIVDVAGD----------NLCFVSSGTIVSCVRQSLAFRLCQLYEG 55
           RI+GIDPG R  G+ +V+V                +V  G + +  R  +  RL ++  G
Sbjct: 5   RILGIDPGTRVVGYALVEVPTRSKSSAGPGPARFDYVECGVLRARARDEMHVRLVEIASG 64

Query: 56  LTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAV 115
           L +++  ++P E A+E+ F   +A + L L +AR    L      + V+EYAP  IK+AV
Sbjct: 65  LRELLAEFQPHELAIERAFHGLNAASALTLAEARGAFKLIALEHGLSVAEYAPAMIKRAV 124

Query: 116 IGVGHGDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHAN 159
            G G   K ++   +++L   +     DAADALA A+CH     
Sbjct: 125 TGRGRATKAEVQARVQLLCRLAKEPQADAADALATAICHVQARR 168


>gi|212715817|ref|ZP_03323945.1| hypothetical protein BIFCAT_00718 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661184|gb|EEB21759.1| hypothetical protein BIFCAT_00718 [Bifidobacterium catenulatum DSM
           16992]
          Length = 193

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 40/137 (29%), Positives = 72/137 (52%), Gaps = 1/137 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAG-DNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           + I+G+DPGL R G G+++      L F+    + S  + S   RL  +Y+GL + I+ +
Sbjct: 1   MIILGVDPGLTRCGVGVIEAGAYRRLSFIHVDVVRSDPKMSQDLRLLAIYDGLVEKIERF 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P+  ++E+VF  ++    L   QA  +A+L+ A   IPV+ + P   K A+ G G  +K
Sbjct: 61  APDTVSIERVFAQENRNTVLGTAQAAGLAMLAAAQRGIPVALHTPTESKMAITGNGKAEK 120

Query: 124 KQIHMMLKMLMPESFFK 140
            Q+  M+  ++  +   
Sbjct: 121 IQMERMVSRILGLNTLP 137


>gi|333028330|ref|ZP_08456394.1| putative holliday junction resolvase [Streptomyces sp. Tu6071]
 gi|332748182|gb|EGJ78623.1| putative holliday junction resolvase [Streptomyces sp. Tu6071]
          Length = 198

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 44/134 (32%), Positives = 71/134 (52%), Gaps = 1/134 (0%)

Query: 4   SIRIIGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
           ++R++G+DPGL R G G+VD      L  V  G + +     L+ RL  +  G+ + +  
Sbjct: 14  AVRVLGVDPGLTRCGVGVVDGVPGRPLTMVGVGVVRTPADAELSRRLLAVEAGIEEWLDT 73

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
            RPE  A+E+VF   +    +   QA A+A+L  A   +PV+ + P+ +K AV G G  D
Sbjct: 74  HRPEYVAIERVFSQHNVRTVMGTAQASAVAMLCAARRGLPVALHTPSEVKAAVTGSGRAD 133

Query: 123 KKQIHMMLKMLMPE 136
           K Q+  M+  L+  
Sbjct: 134 KAQVGAMVTRLLRL 147


>gi|218438641|ref|YP_002376970.1| Crossover junction endodeoxyribonuclease [Cyanothece sp. PCC 7424]
 gi|218171369|gb|ACK70102.1| Crossover junction endodeoxyribonuclease [Cyanothece sp. PCC 7424]
          Length = 162

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 32/148 (21%), Positives = 66/148 (44%), Gaps = 1/148 (0%)

Query: 6   RIIGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           R +G+DPG+ R GW ++D         +  GTI +  +     RL ++   +++++  ++
Sbjct: 4   RWLGLDPGIARIGWAVLDNDEQTTPILLDYGTIETSKQCPTPQRLLEIETDISELLSEFK 63

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           PE+ A+E  F ++   A   + QA  +  L        +      +  K  +  G   K+
Sbjct: 64  PEKVAIEMPFFSRQIKAAGGVIQALGVLNLVIYRELKIIPILLHQSSWKCHLDHGRATKE 123

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAV 152
           ++  +++ +         D  DA+AIA 
Sbjct: 124 EVAEVIQSIFHLETLPIDDTVDAIAIAY 151


>gi|261337767|ref|ZP_05965651.1| crossover junction endodeoxyribonuclease RuvC [Bifidobacterium
           gallicum DSM 20093]
 gi|270277220|gb|EFA23074.1| crossover junction endodeoxyribonuclease RuvC [Bifidobacterium
           gallicum DSM 20093]
          Length = 194

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 38/137 (27%), Positives = 66/137 (48%), Gaps = 1/137 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           + I+G+DPGL R G G+++      L F+    + S        RL  +Y GL   +  +
Sbjct: 1   MIILGVDPGLTRCGVGVIEAGVNRRLSFMHVDVVRSDSHMPQDLRLLTVYNGLCAKLDEF 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P+  ++E+VF   +    L   QA  +A+L  A   IPV+ + P+  K A+ G G  +K
Sbjct: 61  IPDVVSIERVFAQDNRSTVLGTAQAAGLAMLGAAQRGIPVALHTPSESKLAITGNGRAEK 120

Query: 124 KQIHMMLKMLMPESFFK 140
            Q+  M+  ++  +   
Sbjct: 121 IQMERMVARILGLNQLP 137


>gi|183222663|ref|YP_001840659.1| putative crossover junction endodeoxyribonuclease RuvC [Leptospira
           biflexa serovar Patoc strain 'Patoc 1 (Paris)']
 gi|189912695|ref|YP_001964250.1| crossover junction endoribonuclease [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167777371|gb|ABZ95672.1| Crossover junction endoribonuclease [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167781085|gb|ABZ99383.1| Putative crossover junction endodeoxyribonuclease RuvC (Holliday
           junction nuclease ruvC) [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
          Length = 158

 Score =  152 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 42/151 (27%), Positives = 79/151 (52%), Gaps = 4/151 (2%)

Query: 5   IRIIGIDPGLRRTGWGIV---DVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           ++IIGIDPG  R G+ ++   +    N   ++ GTI    +      L Q+   L  ++ 
Sbjct: 1   MKIIGIDPGSHRVGYAVLSFPEGMRRNPELLAYGTIEVAPKTPSPVNLLQIRSELQKILS 60

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
            ++PE AAVE++F  ++    +K+ ++R + +L+    +IP+       IKK +   G+ 
Sbjct: 61  LYQPEHAAVEELFFVQNTTTGMKVSESRGVILLTLGENQIPMVSLTATQIKKGISAKGNA 120

Query: 122 DKKQIHMMLKMLMPESFFKGKDAA-DALAIA 151
            KK++   ++M++     KG D + DA+A A
Sbjct: 121 TKKEVRAAIQMILGFKDLKGHDDSWDAIACA 151


>gi|16332062|ref|NP_442790.1| Holliday juction resolvase RuvC [Synechocystis sp. PCC 6803]
 gi|6685944|sp|Q55506|RUVC_SYNY3 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|1001371|dbj|BAA10861.1| Holliday juction resolvase; RuvC [Synechocystis sp. PCC 6803]
          Length = 167

 Score =  152 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 37/148 (25%), Positives = 67/148 (45%), Gaps = 1/148 (0%)

Query: 6   RIIGIDPGLRRTGWGIVDVAGD-NLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           R +GIDPGL   GW I+D   D +   V  G I +    S   RL ++ + +  +++ + 
Sbjct: 9   RWLGIDPGLAIIGWAILDGQPDLSAHLVDYGIIETSKNLSTPERLVEIEQDIHVLLEEFS 68

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  A+E  F ++   A   + QA  +  L     +     +   +  K  +G G  +K 
Sbjct: 69  PQAIAMEMPFFSRQIKAAGGVMQALGVINLVIYREKSIQPVFLHQSSWKCHLGNGKANKA 128

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAV 152
           ++  M++           D+ DA+AIA+
Sbjct: 129 EVAAMVQNFFGLEDLPIDDSVDAIAIAL 156


>gi|116329113|ref|YP_798833.1| crossover junction endoribonuclease [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116121857|gb|ABJ79900.1| Crossover junction endoribonuclease [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
          Length = 166

 Score =  152 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 50/160 (31%), Positives = 86/160 (53%), Gaps = 1/160 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RIIGIDPG  R G+ I++     +  ++ GT+           L  L +GLT+++K ++
Sbjct: 1   MRIIGIDPGSHRAGYAILEKTASKIRILAYGTVEVPSGTPSPNNLLVLRKGLTEILKEFK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P  A+VE++F  K+     ++ ++R + +++ A   I + E   + IKK   G G+ DKK
Sbjct: 61  PSIASVEEMFFAKNKKTASRVFESRGVLLVTLAEMNIQILEPTVSQIKKGTTGSGNADKK 120

Query: 125 QIHMMLKMLMPESFFKGKDAA-DALAIAVCHAYHANSGYY 163
           QI   LK+L+     KG D + DA+A A      ++S  +
Sbjct: 121 QIRQALKLLLDIDLLKGHDDSWDAVAAAYVGLSMSSSPLF 160


>gi|116330277|ref|YP_799995.1| crossover junction endoribonuclease [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
 gi|116123966|gb|ABJ75237.1| Crossover junction endoribonuclease [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
          Length = 166

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 49/160 (30%), Positives = 85/160 (53%), Gaps = 1/160 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RIIGIDPG  R G+ +++     +  ++ GT+           L  L +GLT+++K ++
Sbjct: 1   MRIIGIDPGSHRAGYAVLEKTASKIRILAYGTVEVPSGTPSPNNLLVLRKGLTEILKEFK 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P  A+VE++F  K+     ++ ++R + +++ A   I + E   + IKK   G G  DKK
Sbjct: 61  PSIASVEEMFFAKNKKTASRVFESRGVLLVTLAEMNIQILEPTVSQIKKGTTGSGTADKK 120

Query: 125 QIHMMLKMLMPESFFKGKDAA-DALAIAVCHAYHANSGYY 163
           QI   LK+L+     KG D + DA+A A      ++S  +
Sbjct: 121 QIRQALKLLLDIDLLKGHDDSWDAVAAAYVGLSMSSSPLF 160


>gi|283457991|ref|YP_003362598.1| holliday junction resolvasome, endonuclease subunit [Rothia
           mucilaginosa DY-18]
 gi|283134013|dbj|BAI64778.1| holliday junction resolvasome, endonuclease subunit [Rothia
           mucilaginosa DY-18]
          Length = 228

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 34/138 (24%), Positives = 68/138 (49%), Gaps = 1/138 (0%)

Query: 4   SIRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
           + RI+G+DPGL R G+ ++D+       FV+ G   +   ++L  R+  ++   +  +  
Sbjct: 26  ATRIMGVDPGLTRCGFSMLDMTADRKAHFVNVGVAGTDPARTLDQRILWIFNAASHWLDT 85

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
           +RP+  A+E++F  +     +    A    I + A+  +PV  + P+ +K AV G G  D
Sbjct: 86  YRPDALAIERIFAQEQVNTVIGTAHASGAVISAAAMRGVPVFFHTPSEVKAAVTGSGRAD 145

Query: 123 KKQIHMMLKMLMPESFFK 140
           K  +  M+  ++  +   
Sbjct: 146 KASVGRMVTRILGLNAMP 163


>gi|119025821|ref|YP_909666.1| Holliday junction resolvase [Bifidobacterium adolescentis ATCC
           15703]
 gi|154487346|ref|ZP_02028753.1| hypothetical protein BIFADO_01196 [Bifidobacterium adolescentis
           L2-32]
 gi|166231581|sp|A1A1K1|RUVC_BIFAA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|118765405|dbj|BAF39584.1| crossover junction endodeoxyribonuclease ruvC [Bifidobacterium
           adolescentis ATCC 15703]
 gi|154083864|gb|EDN82909.1| hypothetical protein BIFADO_01196 [Bifidobacterium adolescentis
           L2-32]
          Length = 193

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 40/137 (29%), Positives = 71/137 (51%), Gaps = 1/137 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAG-DNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           + I+G+DPGL R G G+++      L F+    + S  + S   RL  +Y GL + I+ +
Sbjct: 1   MIILGVDPGLTRCGVGVIEAGAYRRLSFIHVDVVRSDPKTSQDLRLLAIYNGLVEKIERF 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P+  ++E+VF  ++    L   QA  +A+L+ A   IPV+ + P   K A+ G G  +K
Sbjct: 61  APDAVSIERVFAQENRNTVLGTAQAAGLAMLAAAQRGIPVALHTPTESKLAITGNGKAEK 120

Query: 124 KQIHMMLKMLMPESFFK 140
            Q+  M+  ++  +   
Sbjct: 121 IQMERMVARILGLNTLP 137


>gi|307150321|ref|YP_003885705.1| Crossover junction endodeoxyribonuclease [Cyanothece sp. PCC 7822]
 gi|306980549|gb|ADN12430.1| Crossover junction endodeoxyribonuclease [Cyanothece sp. PCC 7822]
          Length = 162

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 33/153 (21%), Positives = 68/153 (44%), Gaps = 3/153 (1%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGD-NLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDV 59
           M K  R +G+DPGL R GW ++++        +  GTI +  R     RL ++ + ++++
Sbjct: 1   MSK--RWLGLDPGLARIGWAVLEIDEPLPAQLLDYGTIETSKRCPTPERLLEIEKDISEI 58

Query: 60  IKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVG 119
           ++ ++P+  A+E  F  +   A   + QA  +  L        +      +  K  +  G
Sbjct: 59  LQEFQPQAVAIEMPFFGRQIKAAGGVIQALGVLNLVIYRELKILPILLHQSSWKCYLDHG 118

Query: 120 HGDKKQIHMMLKMLMPESFFKGKDAADALAIAV 152
              K+++  +++ +         D  DA+ IA 
Sbjct: 119 RATKQEVAEIIQNIFNLDSLPIDDTVDAIGIAY 151


>gi|225848859|ref|YP_002729023.1| crossover junction endodeoxyribonuclease RuvC (Hollidayjunction
           nuclease ruvC) (Holliday junction resolvase ruvC)
           [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643382|gb|ACN98432.1| crossover junction endodeoxyribonuclease RuvC (Hollidayjunction
           nuclease ruvC) (Holliday junction resolvase ruvC)
           [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 153

 Score =  150 bits (381), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 42/150 (28%), Positives = 75/150 (50%), Gaps = 4/150 (2%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++II +DP   +TG+ + +V  D +  +  G+I+   +++    L  L+E L D I    
Sbjct: 1   MKIISLDPSTSKTGYAVAEVYEDKISLIEYGSILLKGKKNT---LKLLFETLQDKINQHS 57

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
            E   +E  F + +A   +KLG+ R + +L   +  + V +Y P  +K A  G G   K+
Sbjct: 58  IEAVILETPFYSINAQTLIKLGEVRGVILLLAQINNLKVFQYTPAEVKIAATGYGRSSKE 117

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCH 154
           ++  M+  +      +  D AD+LAI  CH
Sbjct: 118 EVINMVNRIFNLD-IQDSDIADSLAILYCH 146


>gi|171742913|ref|ZP_02918720.1| hypothetical protein BIFDEN_02030 [Bifidobacterium dentium ATCC
           27678]
 gi|283456065|ref|YP_003360629.1| Crossover junction endodeoxyribonuclease ruvC [Bifidobacterium
           dentium Bd1]
 gi|306822724|ref|ZP_07456102.1| crossover junction endoribonuclease subunit C [Bifidobacterium
           dentium ATCC 27679]
 gi|309800829|ref|ZP_07694961.1| crossover junction endodeoxyribonuclease RuvC [Bifidobacterium
           dentium JCVIHMP022]
 gi|171278527|gb|EDT46188.1| hypothetical protein BIFDEN_02030 [Bifidobacterium dentium ATCC
           27678]
 gi|283102699|gb|ADB09805.1| Crossover junction endodeoxyribonuclease ruvC [Bifidobacterium
           dentium Bd1]
 gi|304554269|gb|EFM42178.1| crossover junction endoribonuclease subunit C [Bifidobacterium
           dentium ATCC 27679]
 gi|308222365|gb|EFO78645.1| crossover junction endodeoxyribonuclease RuvC [Bifidobacterium
           dentium JCVIHMP022]
          Length = 193

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 40/137 (29%), Positives = 71/137 (51%), Gaps = 1/137 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAG-DNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           + I+G+DPGL R G G+++      L F+    + S  + S   RL  +Y GL + I+ +
Sbjct: 1   MIILGVDPGLTRCGVGVIEAGAYRRLSFIHVDVVRSDPKMSQDLRLLAIYNGLVEKIERF 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P+  ++E+VF  ++    L   QA  +A+L+ A   IPV+ + P   K A+ G G  +K
Sbjct: 61  APDTVSIERVFAQENRNTVLGTAQAAGLAMLAAAQRGIPVALHTPTESKMAITGNGKAEK 120

Query: 124 KQIHMMLKMLMPESFFK 140
            Q+  M+  ++  +   
Sbjct: 121 IQMERMVARMLGLNTLP 137


>gi|255327195|ref|ZP_05368270.1| crossover junction endodeoxyribonuclease RuvC [Rothia mucilaginosa
           ATCC 25296]
 gi|255295813|gb|EET75155.1| crossover junction endodeoxyribonuclease RuvC [Rothia mucilaginosa
           ATCC 25296]
          Length = 229

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 34/138 (24%), Positives = 67/138 (48%), Gaps = 1/138 (0%)

Query: 4   SIRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
           + RI+G+DPGL R G+ ++D+       FV+ G   +   +SL  R+  ++   +  +  
Sbjct: 27  ATRIMGVDPGLTRCGFSMLDMTADRKAHFVNVGVAGTIPAESLDQRILWIFNAASHWLDT 86

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
           ++P+  A+E++F  +     +    A    I + A+  +PV  + P+ +K AV G G  D
Sbjct: 87  YKPDALAIERIFAQEQVNTVIGTAHASGAVISAAAMRGVPVFFHTPSEVKAAVTGSGRAD 146

Query: 123 KKQIHMMLKMLMPESFFK 140
           K  +  M+  ++      
Sbjct: 147 KASVGRMVTRILGLDSMP 164


>gi|91227615|ref|ZP_01261919.1| Holliday junction resolvase [Vibrio alginolyticus 12G01]
 gi|91188508|gb|EAS74801.1| Holliday junction resolvase [Vibrio alginolyticus 12G01]
          Length = 120

 Score =  150 bits (380), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 44/103 (42%), Positives = 66/103 (64%)

Query: 58  DVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIG 117
           ++I  ++P+  A+EQVF+ K+A + LKLGQAR  AI++   A +PV EYA   IK+AV+G
Sbjct: 1   EIITQFQPDVFAIEQVFMAKNADSALKLGQARGSAIVAAVNAELPVFEYAARLIKQAVVG 60

Query: 118 VGHGDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
            G  DK Q+  M++ ++        DAADAL +A+CHA    +
Sbjct: 61  TGGADKAQVQHMVQQMLKLPAKPQADAADALGVAICHANTNKT 103


>gi|183601645|ref|ZP_02963015.1| Holliday junction resolvase [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|219683821|ref|YP_002470204.1| Holliday junction resolvase [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|241190857|ref|YP_002968251.1| Holliday junction resolvase [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|241196263|ref|YP_002969818.1| Holliday junction resolvase [Bifidobacterium animalis subsp. lactis
           DSM 10140]
 gi|254767458|sp|B8DUE9|RUVC_BIFA0 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|183219251|gb|EDT89892.1| Holliday junction resolvase [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|219621471|gb|ACL29628.1| crossover junction endodeoxyribonuclease RuvC [Bifidobacterium
           animalis subsp. lactis AD011]
 gi|240249249|gb|ACS46189.1| Holliday junction resolvase [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|240250817|gb|ACS47756.1| Holliday junction resolvase [Bifidobacterium animalis subsp. lactis
           DSM 10140]
 gi|289178596|gb|ADC85842.1| RuvC [Bifidobacterium animalis subsp. lactis BB-12]
 gi|295793846|gb|ADG33381.1| Holliday junction resolvase [Bifidobacterium animalis subsp. lactis
           V9]
          Length = 193

 Score =  150 bits (379), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 38/139 (27%), Positives = 71/139 (51%), Gaps = 1/139 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAG-DNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           + ++G+DPGL R G G+++      L F+    + S   +S   RL ++Y+GL   +  +
Sbjct: 1   MIVLGVDPGLTRCGVGVIEAGAYRRLSFIHVDVVRSDPHESQDLRLLKIYDGLCAKMDEF 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P+  ++E+VF  ++    L   QA  +A+L+ A   IPV+ + P   K A+ G G  +K
Sbjct: 61  IPDTVSIERVFAQENRNTVLGTAQAAGMAMLAAAQRGIPVALHTPTESKMAITGNGKAEK 120

Query: 124 KQIHMMLKMLMPESFFKGK 142
            Q+  M+  ++  +     
Sbjct: 121 IQMERMVARILNLNALPTP 139


>gi|213692038|ref|YP_002322624.1| crossover junction endodeoxyribonuclease RuvC [Bifidobacterium
           longum subsp. infantis ATCC 15697]
 gi|254767459|sp|B7GR16|RUVC_BIFLI RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|213523499|gb|ACJ52246.1| crossover junction endodeoxyribonuclease RuvC [Bifidobacterium
           longum subsp. infantis ATCC 15697]
 gi|320458150|dbj|BAJ68771.1| holliday junction resolvase [Bifidobacterium longum subsp. infantis
           ATCC 15697]
          Length = 194

 Score =  150 bits (379), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 38/139 (27%), Positives = 68/139 (48%), Gaps = 1/139 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           + I+G+DPGL R G G+++      L F+    + S    +   RL  +Y GL++ +  +
Sbjct: 1   MIILGVDPGLTRCGVGVIEAGEHRRLSFIHVDVVRSSPDITQDLRLLAIYNGLSEKMDRF 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P+  ++E+VF   +    L   QA  +A+L+ A   IPV+ + P   K A+ G G   K
Sbjct: 61  APDAVSIERVFAQSNRNTVLGTAQAAGLAMLAAAQRGIPVALHTPTEAKLAITGNGQAQK 120

Query: 124 KQIHMMLKMLMPESFFKGK 142
            Q+  M+  ++  +     
Sbjct: 121 VQVERMVTRVLNLTKMPTP 139


>gi|45658715|ref|YP_002801.1| putative holliday junction endodeoxyribonuclease protein
           [Leptospira interrogans serovar Copenhageni str. Fiocruz
           L1-130]
 gi|45601959|gb|AAS71438.1| putative holliday junction endodeoxyribonuclease protein
           [Leptospira interrogans serovar Copenhageni str. Fiocruz
           L1-130]
          Length = 190

 Score =  150 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 46/149 (30%), Positives = 79/149 (53%), Gaps = 1/149 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RIIGIDPG  R G+ +++     +  ++ GT+           L  L +GL ++++ + 
Sbjct: 27  LRIIGIDPGSHRAGYAVLEKNASKIKILNYGTVEVPSGTPSPDNLLMLRKGLREILEEFN 86

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P  A+VE++F  K+     ++ ++R + +++ A   I + E   + IKK   G G  DKK
Sbjct: 87  PSIASVEEMFFAKNKKTASRVFESRGVLLVTLAELNIRILEPTVSQIKKGTTGSGTADKK 146

Query: 125 QIHMMLKMLMPESFFKGKDAA-DALAIAV 152
           QI   LK+L+     KG D + DA+A A 
Sbjct: 147 QIRHALKLLLNVELLKGHDDSWDAIAAAY 175


>gi|224283113|ref|ZP_03646435.1| Holliday junction resolvase [Bifidobacterium bifidum NCIMB 41171]
 gi|310287482|ref|YP_003938740.1| crossover junction endodeoxyribonuclease ruvC [Bifidobacterium
           bifidum S17]
 gi|313140263|ref|ZP_07802456.1| crossover junction endodeoxyribonuclease ruvC [Bifidobacterium
           bifidum NCIMB 41171]
 gi|309251418|gb|ADO53166.1| crossover junction endodeoxyribonuclease ruvC [Bifidobacterium
           bifidum S17]
 gi|313132773|gb|EFR50390.1| crossover junction endodeoxyribonuclease ruvC [Bifidobacterium
           bifidum NCIMB 41171]
          Length = 193

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 41/139 (29%), Positives = 68/139 (48%), Gaps = 1/139 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           + I+G+DPGL R G G+++  A   L F+    + S    S   RL  +Y GL   +  +
Sbjct: 1   MIILGVDPGLTRCGVGVIEAGANRRLSFIHVDVVRSDPHTSQDLRLLTIYNGLCSKMDRF 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P+  ++E+VF   +    L   QA  +A+L+ A   IPV+ + P   K A+ G G  +K
Sbjct: 61  IPDAVSIERVFAQSNRNTVLGTAQAAGMAMLAAAQRGIPVALHTPTEAKLAITGNGKAEK 120

Query: 124 KQIHMMLKMLMPESFFKGK 142
            QI  M+  ++  +     
Sbjct: 121 IQIERMVAKVLGLNTLPQP 139


>gi|23335125|ref|ZP_00120363.1| COG0817: Holliday junction resolvasome, endonuclease subunit
           [Bifidobacterium longum DJO10A]
 gi|23465305|ref|NP_695908.1| Holliday junction resolvase [Bifidobacterium longum NCC2705]
 gi|189439314|ref|YP_001954395.1| Holliday junction resolvase [Bifidobacterium longum DJO10A]
 gi|227547259|ref|ZP_03977308.1| crossover junction endodeoxyribonuclease [Bifidobacterium longum
           subsp. infantis ATCC 55813]
 gi|239621473|ref|ZP_04664504.1| holliday junction resolvase [Bifidobacterium longum subsp. infantis
           CCUG 52486]
 gi|44888507|sp|Q8G6B9|RUVC_BIFLO RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|238692056|sp|B3DRX8|RUVC_BIFLD RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|23325943|gb|AAN24544.1| crossover junction endodeoxyribonuclease RuvC [Bifidobacterium
           longum NCC2705]
 gi|189427749|gb|ACD97897.1| Holliday junction resolvasome endonuclease subunit [Bifidobacterium
           longum DJO10A]
 gi|227212218|gb|EEI80114.1| crossover junction endodeoxyribonuclease [Bifidobacterium longum
           subsp. infantis ATCC 55813]
 gi|239515934|gb|EEQ55801.1| holliday junction resolvase [Bifidobacterium longum subsp. infantis
           CCUG 52486]
          Length = 194

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 38/139 (27%), Positives = 68/139 (48%), Gaps = 1/139 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           + I+G+DPGL R G G+++      L F+    + S    +   RL  +Y GL++ +  +
Sbjct: 1   MIILGVDPGLTRCGVGVIEAGEHRRLSFIHVDVVRSSPDITQDLRLLAIYNGLSEKMDRF 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P+  ++E+VF   +    L   QA  +A+L+ A   IPV+ + P   K A+ G G   K
Sbjct: 61  APDAVSIERVFAQSNRNTVLGTAQAAGLAMLAAAQRNIPVALHTPTEAKLAITGNGQAQK 120

Query: 124 KQIHMMLKMLMPESFFKGK 142
            Q+  M+  ++  +     
Sbjct: 121 IQVERMVTRILNLTKMPTP 139


>gi|319947800|ref|ZP_08021994.1| Holliday junction resolvase [Dietzia cinnamea P4]
 gi|319438524|gb|EFV93450.1| Holliday junction resolvase [Dietzia cinnamea P4]
          Length = 219

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 36/139 (25%), Positives = 69/139 (49%), Gaps = 1/139 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G  +++ A G  +  +    + +   + L  RL  ++    + ++  
Sbjct: 1   MRVMGVDPGLTRCGLALIETAPGRAVTALDVDVVRTTSDEPLERRLRAVHSVADEWMEIH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RP+  A+E+VF        +   QA  +  L+ A   IPV+ + P+ +K A+ G G  DK
Sbjct: 61  RPDVVAIERVFAQNQVSTAMGTAQAAGVVALAAAYREIPVAFHTPSEVKAAITGSGRADK 120

Query: 124 KQIHMMLKMLMPESFFKGK 142
           KQ+ +M+  ++        
Sbjct: 121 KQMTLMITRILGLQKPPSP 139


>gi|296454196|ref|YP_003661339.1| crossover junction endodeoxyribonuclease RuvC [Bifidobacterium
           longum subsp. longum JDM301]
 gi|312132688|ref|YP_004000027.1| ruvc [Bifidobacterium longum subsp. longum BBMN68]
 gi|317483237|ref|ZP_07942232.1| crossover junction endodeoxyribonuclease RuvC [Bifidobacterium sp.
           12_1_47BFAA]
 gi|322689209|ref|YP_004208943.1| holliday junction resolvase [Bifidobacterium longum subsp. infantis
           157F]
 gi|322691275|ref|YP_004220845.1| holliday junction resolvase [Bifidobacterium longum subsp. longum
           JCM 1217]
 gi|296183627|gb|ADH00509.1| crossover junction endodeoxyribonuclease RuvC [Bifidobacterium
           longum subsp. longum JDM301]
 gi|311773646|gb|ADQ03134.1| RuvC [Bifidobacterium longum subsp. longum BBMN68]
 gi|316915306|gb|EFV36733.1| crossover junction endodeoxyribonuclease RuvC [Bifidobacterium sp.
           12_1_47BFAA]
 gi|320456131|dbj|BAJ66753.1| holliday junction resolvase [Bifidobacterium longum subsp. longum
           JCM 1217]
 gi|320460545|dbj|BAJ71165.1| holliday junction resolvase [Bifidobacterium longum subsp. infantis
           157F]
          Length = 194

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 38/139 (27%), Positives = 68/139 (48%), Gaps = 1/139 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           + I+G+DPGL R G G+++      L F+    + S    +   RL  +Y GL++ +  +
Sbjct: 1   MIILGVDPGLTRCGVGVIEAGEHRRLSFIHVDVVRSSPDITQDLRLLAIYNGLSEKMDRF 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P+  ++E+VF   +    L   QA  +A+L+ A   IPV+ + P   K A+ G G   K
Sbjct: 61  APDAVSIERVFAQSNRNTVLGTAQAAGLAMLAAAQRNIPVALHTPTEAKLAITGNGQAQK 120

Query: 124 KQIHMMLKMLMPESFFKGK 142
            Q+  M+  ++  +     
Sbjct: 121 IQVERMVTRILNLTKMPTP 139


>gi|291456788|ref|ZP_06596178.1| crossover junction endodeoxyribonuclease RuvC [Bifidobacterium
           breve DSM 20213]
 gi|291382065|gb|EFE89583.1| crossover junction endodeoxyribonuclease RuvC [Bifidobacterium
           breve DSM 20213]
          Length = 194

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 38/139 (27%), Positives = 68/139 (48%), Gaps = 1/139 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           + I+G+DPGL R G G+++      L F+    + S    +   RL  +Y GL++ +  +
Sbjct: 1   MIILGVDPGLTRCGVGVIEAGEHRRLSFIHVDVVRSSPDITQDLRLLAIYNGLSEKMDRF 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P+  ++E+VF   +    L   QA  +A+L+ A   IPV+ + P   K A+ G G   K
Sbjct: 61  APDAVSIERVFAQSNRNTVLGTAQAAGLAMLAAAQRNIPVALHTPTEAKLAITGNGQAQK 120

Query: 124 KQIHMMLKMLMPESFFKGK 142
            Q+  M+  ++  +     
Sbjct: 121 IQVERMVTRILNLTKMPTP 139


>gi|85375731|ref|YP_459793.1| Holliday junction resolvase [Erythrobacter litoralis HTCC2594]
 gi|123409472|sp|Q2N5P5|RUVC_ERYLH RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|84788814|gb|ABC64996.1| Holliday junction resolvase [Erythrobacter litoralis HTCC2594]
          Length = 163

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 50/129 (38%), Positives = 79/129 (61%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+G+DP L  TGWG++   G  +  V++G + +  +  +A RL  L+  +  VI    P+
Sbjct: 4   ILGLDPSLSCTGWGVIRAEGSRIAHVANGQVKTDAKAPIADRLHHLHAAIAAVIAAHDPD 63

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
            AA E++F+NK+  +TLKL QAR   + + A   + V+E+A   +KK+V+G G  DK Q+
Sbjct: 64  RAAAEEIFINKNPQSTLKLAQARGCVLAACAAGGLAVNEHAARLVKKSVVGTGGADKAQV 123

Query: 127 HMMLKMLMP 135
             MLK+LMP
Sbjct: 124 QAMLKVLMP 132


>gi|308271857|emb|CBX28465.1| hypothetical protein N47_G37890 [uncultured Desulfobacterium sp.]
          Length = 167

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 51/162 (31%), Positives = 90/162 (55%), Gaps = 2/162 (1%)

Query: 2   RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           +K I++IGIDPGL  TG GI+  AG  +   S G+I +   Q LA RL  +Y  L  ++K
Sbjct: 5   QKMIKVIGIDPGLASTGVGIICGAGLKIQRFSFGSINTSKNQVLAERLDHIYSKLLLLLK 64

Query: 62  NWRPEEAAVEQVF-VNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
           + +P+   +E VF ++    + + LG+   + +LS   A +  SE A   +K  + G G+
Sbjct: 65  DEKPDLMVLEDVFSLDTYPKSGINLGKVTGVILLSACHAGVRTSEVAVREVKHVLTGNGN 124

Query: 121 GDKKQIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHANSG 161
            +K+Q+ + ++ L+   +  K   A+DA+A+A+   +  N+ 
Sbjct: 125 ANKEQLELTVRHLLKLNTPIKPYHASDAIALALLGLFRHNNN 166


>gi|295839915|ref|ZP_06826848.1| crossover junction endodeoxyribonuclease RuvC [Streptomyces sp.
           SPB74]
 gi|295827705|gb|EDY43677.2| crossover junction endodeoxyribonuclease RuvC [Streptomyces sp.
           SPB74]
          Length = 182

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 42/130 (32%), Positives = 67/130 (51%), Gaps = 1/130 (0%)

Query: 8   IGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           +G+DPGL R G G+V+      L  V  G + +     L+ RL  +  G+ + +   RPE
Sbjct: 2   LGVDPGLTRCGVGVVEGVPGRPLTMVGVGVVRTPADAELSRRLLAVEAGIEEWLDTHRPE 61

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+E+VF   +    +   QA A+A+L  A   +PV+ + P+ +K AV G G  DK Q+
Sbjct: 62  YVAIERVFSQHNVRTVMGTAQASAVAMLCAARRGLPVALHTPSEVKAAVTGSGRADKAQV 121

Query: 127 HMMLKMLMPE 136
             M+  L+  
Sbjct: 122 GAMVTRLLRL 131


>gi|94984435|ref|YP_603799.1| crossover junction endodeoxyribonuclease RuvC [Deinococcus
           geothermalis DSM 11300]
 gi|122986717|sp|Q1J1K4|RUVC_DEIGD RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|94554716|gb|ABF44630.1| Crossover junction endodeoxyribonuclease RuvC [Deinococcus
           geothermalis DSM 11300]
          Length = 168

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 36/131 (27%), Positives = 68/131 (51%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + ++G+DPGL   G G+V+        +    + +     +  RL  L+E +  ++  +R
Sbjct: 1   MIVLGVDPGLANLGLGLVEGDVRKARHLYHVCLTTESAWLMPRRLQYLHEEVARLLAEYR 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P+  A+E   + + A    K+GQA  +  L+ A A +P+  Y P  +K++++G G  DK+
Sbjct: 61  PDAVAIEDQILRRQADVAFKVGQAFGVVQLACAQAGVPIHAYGPMQVKRSLVGTGRADKE 120

Query: 125 QIHMMLKMLMP 135
           QI  M+K  + 
Sbjct: 121 QIIYMVKATLG 131


>gi|294827719|ref|NP_710904.2| putative Holliday junction endodeoxyribonuclease protein
           [Leptospira interrogans serovar Lai str. 56601]
 gi|293385562|gb|AAN47922.2| putative holliday junction endodeoxyribonuclease protein
           [Leptospira interrogans serovar Lai str. 56601]
          Length = 171

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 47/149 (31%), Positives = 80/149 (53%), Gaps = 1/149 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RIIGIDPG  R G+ +++     +  ++ GT+           L  L +GL ++++ + 
Sbjct: 8   LRIIGIDPGSHRAGYAVLEKNASKIKILNYGTVEVPSGTPSPDNLLMLRKGLREILEEFN 67

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P  A+VE++F  K+     ++ ++R + +++ A   I + E   + IKK   G G  DKK
Sbjct: 68  PSIASVEEMFFAKNKKTASRVFESRGVLLVTLAEMNIRILEPTVSQIKKGTTGSGTADKK 127

Query: 125 QIHMMLKMLMPESFFKGKDAA-DALAIAV 152
           QIH  LK+L+     KG D + DA+A A 
Sbjct: 128 QIHQALKLLLNVELLKGHDDSWDAIAAAY 156


>gi|225352128|ref|ZP_03743151.1| hypothetical protein BIFPSEUDO_03743 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157375|gb|EEG70714.1| hypothetical protein BIFPSEUDO_03743 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 194

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 41/137 (29%), Positives = 71/137 (51%), Gaps = 1/137 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAG-DNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           I I+G+DPGL R G G+++      L F+    + S  + S   RL  +Y GL + I+ +
Sbjct: 2   IIILGVDPGLTRCGVGVIEAGAYRRLSFIHVDVVRSDPKMSQDLRLLAIYNGLVEKIERF 61

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P+  ++E+VF  ++    L   QA  +A+L+ A   IPV+ + P   K A+ G G  +K
Sbjct: 62  APDTVSIERVFAQENRNTVLGTAQAAGLAMLAAAQRGIPVALHTPTESKMAITGNGKAEK 121

Query: 124 KQIHMMLKMLMPESFFK 140
            Q+  M+  ++  +   
Sbjct: 122 IQMERMVARILGLNTLP 138


>gi|184201012|ref|YP_001855219.1| Holliday junction endonuclease RuvC [Kocuria rhizophila DC2201]
 gi|183581242|dbj|BAG29713.1| Holliday junction endonuclease RuvC [Kocuria rhizophila DC2201]
          Length = 222

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 38/140 (27%), Positives = 71/140 (50%), Gaps = 1/140 (0%)

Query: 4   SIRIIGIDPGLRRTGWGIVDVAGDNL-CFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
           + R++ +DPGL R G+ +VD++      FV      S   ++L  R+  + E   ++++ 
Sbjct: 9   TRRVLAVDPGLTRCGFAVVDMSAQRTGTFVHVQVSGSRAHEALERRVLTIMEAAEELMER 68

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
           + P+  AVE+VF   +A   +   QA  + I + A   IPV+ + P+ +K AV G G  D
Sbjct: 69  FAPDVVAVERVFAQNNAPTVVGTAQATGVVIAAAARRGIPVAWHTPSEVKAAVTGDGSAD 128

Query: 123 KKQIHMMLKMLMPESFFKGK 142
           K+ ++ M+  ++        
Sbjct: 129 KESVNRMVVRILRLDAPPRP 148


>gi|229817633|ref|ZP_04447915.1| hypothetical protein BIFANG_02903 [Bifidobacterium angulatum DSM
           20098]
 gi|229785422|gb|EEP21536.1| hypothetical protein BIFANG_02903 [Bifidobacterium angulatum DSM
           20098]
          Length = 193

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 39/139 (28%), Positives = 67/139 (48%), Gaps = 1/139 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAG-DNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           + I+G+DPGL R G G+++      L F+    + S    S   RL  +Y GL + +  +
Sbjct: 1   MIILGVDPGLTRCGVGVIEAGAYRRLSFIHVDVVRSAPDVSQDLRLLAIYNGLVEKMDRF 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P+  ++E+VF   +    L   QA  +A+L+ A   IPV+ + P   K A+ G G   K
Sbjct: 61  VPDVVSIERVFAQSNHNTVLGTAQAAGLAMLAAAQRGIPVALHTPTEAKLAITGDGRAQK 120

Query: 124 KQIHMMLKMLMPESFFKGK 142
            Q+  M+  ++  +     
Sbjct: 121 IQVERMVTRILNLNTMPTP 139


>gi|223938503|ref|ZP_03630395.1| crossover junction endodeoxyribonuclease RuvC [bacterium Ellin514]
 gi|223892765|gb|EEF59234.1| crossover junction endodeoxyribonuclease RuvC [bacterium Ellin514]
          Length = 193

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 40/134 (29%), Positives = 70/134 (52%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+G+DP LR TG+GI+ +A      +  GTI        +  L ++ + L DVIK  +P 
Sbjct: 31  ILGVDPSLRGTGFGIIRLAKPYPQTLVHGTISCPATWEHSRCLVKIAQTLRDVIKQHQPT 90

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+E +F  ++    L +G+AR  A+ +   A + + E AP  +K+A++G G   K  +
Sbjct: 91  VCAIEGLFFAQNLQTALIMGEARGAAMATIGEAGLEIFEIAPRKVKQAIVGYGAAQKMAV 150

Query: 127 HMMLKMLMPESFFK 140
             M++ ++  S   
Sbjct: 151 AKMVQRMLHLSELP 164


>gi|86740075|ref|YP_480475.1| Holliday junction resolvase [Frankia sp. CcI3]
 gi|123737624|sp|Q2JD96|RUVC_FRASC RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|86566937|gb|ABD10746.1| Holliday junction endonuclease RuvC [Frankia sp. CcI3]
          Length = 172

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 46/135 (34%), Positives = 70/135 (51%), Gaps = 1/135 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGD-NLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++G+DPGL R G G+VD         V  G + +     +A RLC + +G+   +   
Sbjct: 1   MRVLGVDPGLTRCGLGVVDGGLGIRAHLVEVGVVRTPATAEVAERLCAVSDGIDAWLDRT 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RPE  AVE+VF   +    +   QA A+AI+  A   +PV  Y P+ +K AV G G  DK
Sbjct: 61  RPEAVAVEKVFSQANMRTVMGTAQAGAVAIVLAARRGLPVGLYTPSEVKAAVTGSGRADK 120

Query: 124 KQIHMMLKMLMPESF 138
            Q+  M+  L+  + 
Sbjct: 121 AQVSFMITRLLGLTE 135


>gi|327540431|gb|EGF27016.1| crossover junction endodeoxyribonuclease ruvC [Rhodopirellula
           baltica WH47]
          Length = 149

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 47/141 (33%), Positives = 74/141 (52%), Gaps = 2/141 (1%)

Query: 22  VDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKD-AV 80
           +   G  LC   +G I S    +L  RL +++ GL++V      +  A+EQ+F + D   
Sbjct: 2   ISREGPRLCLREAGVIKSRRSDTLPERLREIHVGLSEVFAAHAVDLMALEQLFSHYDRPR 61

Query: 81  ATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPE-SFF 139
             + +G AR +  L+ A A +PV  Y P  +KK + G G   K QI + +KM +   S  
Sbjct: 62  TAILMGHARGVICLAAASAGVPVEHYEPTRVKKVMTGNGRAPKSQIQLAVKMQLNLQSVP 121

Query: 140 KGKDAADALAIAVCHAYHANS 160
           +  D ADA+AI++C  Y AN+
Sbjct: 122 EPADVADAMAISLCGHYLANN 142


>gi|302517992|ref|ZP_07270334.1| crossover junction endodeoxyribonuclease RuvC [Streptomyces sp.
           SPB78]
 gi|302426887|gb|EFK98702.1| crossover junction endodeoxyribonuclease RuvC [Streptomyces sp.
           SPB78]
          Length = 179

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 54/152 (35%), Positives = 80/152 (52%), Gaps = 2/152 (1%)

Query: 11  DPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAA 69
           DPGL R G G+VD      L  V  G + +     L+ RL  +  G+ + +   RPE  A
Sbjct: 2   DPGLTRCGVGVVDGVPGRPLTMVGVGVVRTPADAELSRRLLAVEAGIEEWLDTHRPEYVA 61

Query: 70  VEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMM 129
           +E+VF   +    +   QA A+A+L  A   +PV+ + P+ +K AV G G  DK Q+  M
Sbjct: 62  IERVFSQHNVRTVMGTAQASAVAMLCAARRGLPVALHTPSEVKAAVTGSGRADKAQVGAM 121

Query: 130 LKMLMPE-SFFKGKDAADALAIAVCHAYHANS 160
           +  L+      K  DAADALA+A+CH + A +
Sbjct: 122 VTRLLRLAEPPKPADAADALALAICHIWRAPT 153


>gi|300741596|ref|ZP_07071617.1| crossover junction endodeoxyribonuclease RuvC [Rothia dentocariosa
           M567]
 gi|300380781|gb|EFJ77343.1| crossover junction endodeoxyribonuclease RuvC [Rothia dentocariosa
           M567]
          Length = 198

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 62/134 (46%), Gaps = 1/134 (0%)

Query: 8   IGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           +G+DPGL R G  ++D+       F++ G   +   + L  R+ +++      +  ++P+
Sbjct: 1   MGVDPGLTRCGLSMIDMTANRKASFINVGIAGTAAAEPLDERILRIFTVTQTWLDTYQPD 60

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+E++F  +     +    A    I + A+  IPV  + P+ +K AV G G  DK  +
Sbjct: 61  ALAIERIFAQEQVNTVIGTAHASGAVISAAAVRGIPVFFHTPSEVKAAVTGSGRADKASV 120

Query: 127 HMMLKMLMPESFFK 140
             M+  ++      
Sbjct: 121 GRMVTKILGLEKIP 134


>gi|296122691|ref|YP_003630469.1| crossover junction endodeoxyribonuclease RuvC [Planctomyces
           limnophilus DSM 3776]
 gi|296015031|gb|ADG68270.1| crossover junction endodeoxyribonuclease RuvC [Planctomyces
           limnophilus DSM 3776]
          Length = 170

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 40/141 (28%), Positives = 68/141 (48%), Gaps = 6/141 (4%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + IIGIDPGL  TG+ ++   G  L    +G I S    SLA R+ ++  GL +V+ +++
Sbjct: 1   MFIIGIDPGLNTTGYAVLACHGRQLVLHEAGVIRSTKGCSLASRVTEIGRGLREVLADYQ 60

Query: 65  PE-----EAAVEQVFVNKD-AVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGV 118
                    A+EQVF +       + +  AR   + + + A IP+  Y P  IK  + G 
Sbjct: 61  SAGHELRAIAIEQVFSHTSFPKTAILMAHARGAILYAASEANIPIVHYMPRQIKSLLTGS 120

Query: 119 GHGDKKQIHMMLKMLMPESFF 139
           G   K+Q+   +++ +     
Sbjct: 121 GKASKEQVQRAVQLELKLPSI 141


>gi|308177528|ref|YP_003916934.1| crossover junction endodeoxyribonuclease RuvC [Arthrobacter
           arilaitensis Re117]
 gi|307744991|emb|CBT75963.1| crossover junction endodeoxyribonuclease RuvC [Arthrobacter
           arilaitensis Re117]
          Length = 199

 Score =  147 bits (371), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 36/138 (26%), Positives = 63/138 (45%), Gaps = 1/138 (0%)

Query: 4   SIRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
           ++R++G+DPGL R G  +VDVA    +  V      +     L  RL ++ + +   +  
Sbjct: 2   ALRVVGVDPGLTRCGLAVVDVAANRQVSLVDVTVAGTPPGTPLDARLLKIADAIDAWLDL 61

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
            +P+  A+E+VF + +    +   Q   + I + A   IPV+ + P  +K AV G G   
Sbjct: 62  HKPDVLALERVFASANVSTVIGTAQVTGVVITAAARRGIPVAMHTPTEVKAAVTGSGQAT 121

Query: 123 KKQIHMMLKMLMPESFFK 140
           K  I  M+  +       
Sbjct: 122 KVAIGKMVAKICRLDEPP 139


>gi|218246333|ref|YP_002371704.1| Crossover junction endodeoxyribonuclease RuvC [Cyanothece sp. PCC
           8801]
 gi|257059380|ref|YP_003137268.1| Crossover junction endodeoxyribonuclease RuvC [Cyanothece sp. PCC
           8802]
 gi|218166811|gb|ACK65548.1| Crossover junction endodeoxyribonuclease RuvC [Cyanothece sp. PCC
           8801]
 gi|256589546|gb|ACV00433.1| Crossover junction endodeoxyribonuclease RuvC [Cyanothece sp. PCC
           8802]
          Length = 162

 Score =  146 bits (370), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 37/147 (25%), Positives = 62/147 (42%), Gaps = 1/147 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNL-CFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
            +GIDPGL   GW ++      +   +  G I +      A RL ++   + ++I+ ++P
Sbjct: 5   WLGIDPGLAIIGWAVLQGKETEIPQLIDYGIIETNKSLPTAARLLEIEGDMVEIIQEFQP 64

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
              A+E  F N+   A   + QA  +  L        +         K  +G G  DKK+
Sbjct: 65  AAIAMEMPFFNRQIKAAGGVIQAVGVINLVIYRETKQIPILLHQASWKCHLGDGKADKKE 124

Query: 126 IHMMLKMLMPESFFKGKDAADALAIAV 152
           +   +K L         D+ DA+AIA 
Sbjct: 125 VAARVKCLFDLPSLPIDDSVDAIAIAY 151


>gi|332756764|gb|EGJ87111.1| crossover junction endodeoxyribonuclease RuvC [Shigella flexneri
           4343-70]
          Length = 136

 Score =  145 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 37/99 (37%), Positives = 61/99 (61%)

Query: 43  QSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIP 102
             L  RL  +Y G+T++I  ++P+  A+EQVF+ K+A + LKLGQAR +AI++     +P
Sbjct: 2   DDLPSRLKLIYAGVTEIITQFQPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELP 61

Query: 103 VSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESFFKG 141
           V EYA   +K+ V+G+G  +K Q+  M++ L+       
Sbjct: 62  VFEYAARQVKQTVVGMGSAEKSQVQHMVRTLLKLPANPQ 100


>gi|288574887|ref|ZP_06393244.1| Crossover junction endodeoxyribonuclease [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288570628|gb|EFC92185.1| Crossover junction endodeoxyribonuclease [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 151

 Score =  145 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 35/126 (27%), Positives = 59/126 (46%)

Query: 17  TGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVN 76
            G+G+V+  G      S G + +    S+  RL +LY GL + I    P   AVE+++  
Sbjct: 1   MGFGVVEKIGSKYRACSFGCLETPSDMSVPQRLDELYRGLREQINGCSPHFMAVEKLYFG 60

Query: 77  KDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPE 136
           ++      + QAR +A+L  A   + V E  P+  K  V G G  +K QI  M+++++  
Sbjct: 61  RNTTTAENVWQARGVALLVGAQNDLFVLEPKPSEAKITVCGDGRAEKSQIQRMVQVILSL 120

Query: 137 SFFKGK 142
                 
Sbjct: 121 KEIPRP 126


>gi|50842638|ref|YP_055865.1| Holliday junction resolvase [Propionibacterium acnes KPA171202]
 gi|81611699|sp|Q6A8K9|RUVC_PROAC RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|50840240|gb|AAT82907.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes KPA171202]
          Length = 196

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 52/173 (30%), Positives = 87/173 (50%), Gaps = 12/173 (6%)

Query: 2   RKSIRIIGIDPGLRRTGWGIVDVAG------DNLCFVSSGTIVSCVRQSLAFRLCQLYEG 55
           R+  R++G+DPGL R       V         +L  ++ G I +      A RL ++++G
Sbjct: 10  RRVTRVMGVDPGLTRC-----GVGVVEGGLGSSLKLIAVGVIRTPADLDHAHRLLRIHDG 64

Query: 56  LTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAV 115
           L +   + RP+  AVE+VF   +        QA  IA++  A   +PV+ + P+ +K A+
Sbjct: 65  LEEWRDHTRPDAIAVEKVFAQHNRNTVAGTAQAAGIAMMIAARHGLPVALHTPSEVKAAI 124

Query: 116 IGVGHGDKKQIHMMLKMLMPES-FFKGKDAADALAIAVCHAYHANSGYYKIAS 167
            G G  DK Q+  M+  ++  S   K  DAADA+A+A+CH +   +     A+
Sbjct: 125 SGSGRADKAQVGFMVARVLRLSAPPKPADAADAVALAICHLWRGGAARRIEAA 177


>gi|309789259|ref|ZP_07683852.1| crossover junction endodeoxyribonuclease RuvC [Shigella dysenteriae
           1617]
 gi|308923013|gb|EFP68527.1| crossover junction endodeoxyribonuclease RuvC [Shigella dysenteriae
           1617]
          Length = 136

 Score =  145 bits (366), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 37/99 (37%), Positives = 61/99 (61%)

Query: 43  QSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIP 102
             L  RL  +Y G+T++I  ++P+  A+EQVF+ K+A + LKLGQAR +AI++     +P
Sbjct: 2   DDLPSRLKLIYAGVTEIITQFQPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELP 61

Query: 103 VSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESFFKG 141
           V EYA   +K+ V+G+G  +K Q+  M++ L+       
Sbjct: 62  VFEYAARQVKQTVVGIGSAEKSQVQHMVRTLLKLPANPQ 100


>gi|332095256|gb|EGJ00283.1| crossover junction endodeoxyribonuclease RuvC [Shigella dysenteriae
           155-74]
          Length = 136

 Score =  145 bits (366), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 38/99 (38%), Positives = 62/99 (62%)

Query: 43  QSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIP 102
             L FRL  +Y G+T++I  ++P+  A+EQVF+ K+A + LKLGQAR +AI++     +P
Sbjct: 2   DDLPFRLKLIYAGVTEIITQFQPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELP 61

Query: 103 VSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESFFKG 141
           V EYA   +K+ V+G+G  +K Q+  M++ L+       
Sbjct: 62  VFEYAARQVKQTVVGIGSAEKSQVQHMVRTLLKLPANPQ 100


>gi|254443446|ref|ZP_05056922.1| crossover junction endodeoxyribonuclease RuvC [Verrucomicrobiae
           bacterium DG1235]
 gi|198257754|gb|EDY82062.1| crossover junction endodeoxyribonuclease RuvC [Verrucomicrobiae
           bacterium DG1235]
          Length = 190

 Score =  145 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 44/153 (28%), Positives = 75/153 (49%), Gaps = 1/153 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           I+GIDP LR TG  +V+ + G     + S T+      S+   L  +   + +++  +  
Sbjct: 38  ILGIDPSLRGTGLAVVEFSSGGRSTLLRSETLKQKQSVSMPQCLGNICSRVLEILDTYEI 97

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
           +  A+EQ    ++      LG AR  AI + A+    V EY P  +K+AV+G G   K+Q
Sbjct: 98  DVVALEQTIYVQNFQTAQILGAARGAAIAAAAMRGKEVFEYPPLRVKQAVVGHGRASKEQ 157

Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHA 158
           +   ++ L+        D +DA A+A+ HA+  
Sbjct: 158 VAKTIRTLLGHGALLELDESDAAAVAMTHAFTG 190


>gi|311064397|ref|YP_003971122.1| crossover junction endodeoxyribonuclease RuvC [Bifidobacterium
           bifidum PRL2010]
 gi|310866716|gb|ADP36085.1| RuvC Crossover junction endodeoxyribonuclease [Bifidobacterium
           bifidum PRL2010]
          Length = 132

 Score =  145 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 41/127 (32%), Positives = 65/127 (51%), Gaps = 1/127 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           + I+G+DPGL R G G+++  A   L F+    + S    S   RL  +Y GL   +  +
Sbjct: 1   MIILGVDPGLTRCGVGVIEAGANRRLSFIHVDVVRSDPHTSQDLRLLTIYNGLCSKMDRF 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
            P+  ++E+VF   +    L   QA  +A+L+ A   IPV+ + P   K A+ G G  +K
Sbjct: 61  IPDAVSIERVFAQSNRNTVLGTAQAAGMAMLAAAQRGIPVALHTPTEAKLAITGNGKAEK 120

Query: 124 KQIHMML 130
            QI  M+
Sbjct: 121 IQIERMV 127


>gi|182414268|ref|YP_001819334.1| crossover junction endodeoxyribonuclease [Opitutus terrae PB90-1]
 gi|177841482|gb|ACB75734.1| Crossover junction endodeoxyribonuclease [Opitutus terrae PB90-1]
          Length = 200

 Score =  144 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 47/153 (30%), Positives = 74/153 (48%), Gaps = 1/153 (0%)

Query: 6   RIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           R++GIDP LR TG  +++ A G     +   T+    R  +A  L +++  +   +    
Sbjct: 45  RVLGIDPSLRGTGLALIEFAPGRAPVLLRCQTVRVSARLPMAQALAEIHRAVLAFLDGTE 104

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
               A+EQ    ++      LG AR  A+   AL   PV EYAP  +K+AV+G G   K+
Sbjct: 105 VRHVALEQTIFVQNFQTAQILGAARGAAMAVAALQGRPVFEYAPLRVKQAVVGAGRASKE 164

Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYH 157
           Q+   +  L+        D ADA  +A+CHA+ 
Sbjct: 165 QMARTVMALLGHGRPLASDEADAAGVALCHAFT 197


>gi|118594337|ref|ZP_01551684.1| Crossover junction endodeoxyribonuclease RuvC [Methylophilales
           bacterium HTCC2181]
 gi|118440115|gb|EAV46742.1| Crossover junction endodeoxyribonuclease RuvC [Methylophilales
           bacterium HTCC2181]
          Length = 118

 Score =  144 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 44/110 (40%), Positives = 66/110 (60%), Gaps = 1/110 (0%)

Query: 60  IKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVG 119
           I  + PE  A+E+VFVN +  +TL LGQAR  AI +  +  +PV EY    IKK+V+G G
Sbjct: 2   ISQFNPECVAIEKVFVNTNPQSTLLLGQARGAAISAAVIHDLPVFEYTALQIKKSVVGQG 61

Query: 120 HGDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQD 169
           H  K+Q+ +M+K L+        D++DALA  +CHA + N+   K+   +
Sbjct: 62  HAKKEQVQLMVKKLLGLPSVASTDSSDALACGLCHA-NINASIAKLGVSN 110


>gi|254449901|ref|ZP_05063338.1| crossover junction endodeoxyribonuclease RuvC [Octadecabacter
           antarcticus 238]
 gi|198264307|gb|EDY88577.1| crossover junction endodeoxyribonuclease RuvC [Octadecabacter
           antarcticus 238]
          Length = 173

 Score =  143 bits (362), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 75/144 (52%), Positives = 93/144 (64%), Gaps = 1/144 (0%)

Query: 22  VDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVA 81
           + V G  L  V++G   S     LA RL  L++ L  VI  + P+ AAVEQ FVN +  A
Sbjct: 2   ILVNGSRLTHVANGVCKSGKG-DLAQRLLALHDQLVAVIAEFAPDAAAVEQTFVNSNGAA 60

Query: 82  TLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESFFKG 141
           TLKLGQAR IA+L PA A + V EYAPN IKKAV+GVGH DK QI  M+K+ +P     G
Sbjct: 61  TLKLGQARGIAMLVPARAGLAVGEYAPNAIKKAVVGVGHADKAQIAHMIKLQLPGVELAG 120

Query: 142 KDAADALAIAVCHAYHANSGYYKI 165
            DAADALAIA+CHA+H  S   ++
Sbjct: 121 PDAADALAIAICHAHHLQSASARV 144


>gi|188996623|ref|YP_001930874.1| Crossover junction endodeoxyribonuclease [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|188931690|gb|ACD66320.1| Crossover junction endodeoxyribonuclease [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 154

 Score =  143 bits (362), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 43/154 (27%), Positives = 73/154 (47%), Gaps = 6/154 (3%)

Query: 6   RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           RI+ IDP   +TG+ I  +  D    +  G I     +     L +LY+ L + I  +  
Sbjct: 3   RILSIDPSSSKTGYVIAKLEKDEALSLDYGLIELKKEK---QPLKKLYQALEEKILKYTI 59

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
           E+  +E  F + +A   +KLG+ R + +L      I V E++P  +K ++ G G   K++
Sbjct: 60  EKIILETPFYSINAQTLIKLGEVRGVILLLAQNYNIKVEEFSPAEVKISITGYGRSGKEE 119

Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHAN 159
           +  M+  +   +  K  D ADA   A+ H Y  N
Sbjct: 120 VLEMVNKIFNLN-IKDYDIADAF--AILHCYMLN 150


>gi|295130716|ref|YP_003581379.1| Crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes SK137]
 gi|291375442|gb|ADD99296.1| Crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes SK137]
 gi|332675561|gb|AEE72377.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes 266]
          Length = 196

 Score =  143 bits (362), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 50/173 (28%), Positives = 85/173 (49%), Gaps = 12/173 (6%)

Query: 2   RKSIRIIGIDPGLRRTGWGIVDVAG------DNLCFVSSGTIVSCVRQSLAFRLCQLYEG 55
            +  R++G+DPGL R       V          L  ++ G I +      A RL ++++G
Sbjct: 10  PRVTRVMGVDPGLTRC-----GVGVVEGGLGSPLKLIAVGVIRTPADLDHAHRLLRIHDG 64

Query: 56  LTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAV 115
           L +   + RP+  AVE+VF   +        QA  +A++  A   +PV+ + P+ +K A+
Sbjct: 65  LEEWRDHTRPDAVAVEKVFAQHNRNTVTGTAQAAGMAMMIAARHGLPVALHTPSEVKAAI 124

Query: 116 IGVGHGDKKQIHMMLKMLMPES-FFKGKDAADALAIAVCHAYHANSGYYKIAS 167
            G G  DK Q+  M+  ++  S   K  DAADA+A+A+CH +   +     A+
Sbjct: 125 SGSGRADKAQVGFMVARVLRLSAPPKPADAADAVALAICHLWRGGAARRIEAA 177


>gi|289425336|ref|ZP_06427113.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes SK187]
 gi|289154314|gb|EFD03002.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes SK187]
          Length = 196

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 50/172 (29%), Positives = 85/172 (49%), Gaps = 12/172 (6%)

Query: 3   KSIRIIGIDPGLRRTGWGIVDVAG------DNLCFVSSGTIVSCVRQSLAFRLCQLYEGL 56
           +  R++G+DPGL R       V          L  ++ G I +      A RL ++++GL
Sbjct: 11  RVTRVMGVDPGLTRC-----GVGVVEGGLGSPLKLIAVGVIRTPADLDHAHRLLRIHDGL 65

Query: 57  TDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVI 116
            +   + RP+  AVE+VF   +        QA  +A++  A   +PV+ + P+ +K A+ 
Sbjct: 66  EEWRDHTRPDAVAVEKVFAQHNRNTVTGTAQAAGMAMMIAARHGLPVALHTPSEVKAAIS 125

Query: 117 GVGHGDKKQIHMMLKMLMPES-FFKGKDAADALAIAVCHAYHANSGYYKIAS 167
           G G  DK Q+  M+  ++  S   K  DAADA+A+A+CH +   +     A+
Sbjct: 126 GSGRADKAQVGFMVARVLRLSAPPKPADAADAVALAICHLWRGGAARRIEAA 177


>gi|145594352|ref|YP_001158649.1| Holliday junction resolvase [Salinispora tropica CNB-440]
 gi|145303689|gb|ABP54271.1| Holliday junction endonuclease RuvC [Salinispora tropica CNB-440]
          Length = 160

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 46/136 (33%), Positives = 68/136 (50%), Gaps = 1/136 (0%)

Query: 26  GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKL 85
           G     V+   + +     L  RL  L   LT ++   RP+  AVE+VF   +    +  
Sbjct: 7   GRPCTLVAYHVVHTDPDDELPLRLLTLDRSLTALVAEHRPDSVAVERVFSQHNVRTVMGT 66

Query: 86  GQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESFFK-GKDA 144
            QA  +A+L+ A A +PV  Y P+ +K AV G G  DK Q+  M+  L+  S      DA
Sbjct: 67  AQASGVAVLAGARAGLPVQTYTPSEVKAAVTGSGQADKAQMTAMVTRLLRLSAPPRPADA 126

Query: 145 ADALAIAVCHAYHANS 160
           ADALA+A+CH +   +
Sbjct: 127 ADALALAICHVWRGGT 142


>gi|284991601|ref|YP_003410155.1| crossover junction endodeoxyribonuclease RuvC [Geodermatophilus
           obscurus DSM 43160]
 gi|284064846|gb|ADB75784.1| crossover junction endodeoxyribonuclease RuvC [Geodermatophilus
           obscurus DSM 43160]
          Length = 188

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 58/156 (37%), Positives = 89/156 (57%), Gaps = 2/156 (1%)

Query: 5   IRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R++GIDPGL R GWG+VD   G     V  G + +     L  RL +L+  +T +++  
Sbjct: 1   MRVLGIDPGLTRCGWGVVDGRPGARPTAVGVGVVRTAAELDLELRLLELHTAVTALLREH 60

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RP+  A+E+VF   +        QA  +A L+ A A  PV+ + P+ +K A+ G G  DK
Sbjct: 61  RPDVVAIERVFTQNNKGTATGTAQAAGVAALAAAQADRPVAWHTPSEVKAAISGSGRADK 120

Query: 124 KQIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHA 158
           +Q+ +M+  ++   S  K  DAADALA+AVCHA+  
Sbjct: 121 EQVTLMVTRVLELASPPKPADAADALALAVCHAWRG 156


>gi|111023844|ref|YP_706816.1| Holliday junction resolvase [Rhodococcus jostii RHA1]
 gi|123339588|sp|Q0S1C8|RUVC_RHOSR RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|110823374|gb|ABG98658.1| crossover junction endoribonuclease [Rhodococcus jostii RHA1]
          Length = 189

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 36/138 (26%), Positives = 61/138 (44%), Gaps = 11/138 (7%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAG------DNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTD 58
           +R++G+DPGL R                  +  ++   + +     L+ RL ++ E    
Sbjct: 1   MRVLGVDPGLTRC-----GFGVVDGGGGRTVTPIAVDVVRTPADLELSSRLLRISEAAES 55

Query: 59  VIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGV 118
            I   RPE  A+E+VF   +    +   QA  +  L+ A   IPV  + P+ +K AV G 
Sbjct: 56  WIDLHRPEVVAIERVFSQHNVRTAMGTAQAGGVVALAAARRGIPVCFHTPSEVKAAVTGS 115

Query: 119 GHGDKKQIHMMLKMLMPE 136
           G  DK Q+  M+  ++  
Sbjct: 116 GSADKAQVTAMVTRILKL 133


>gi|126641559|ref|YP_001084543.1| holliday junction nuclease [Acinetobacter baumannii ATCC 17978]
          Length = 141

 Score =  140 bits (353), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 48/116 (41%), Positives = 73/116 (62%)

Query: 45  LAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVS 104
           +  RL +++ G+  ++K   P EAAVEQVF+ ++  + LKLGQAR  AI +     + V+
Sbjct: 1   MPERLKRIFAGVERIVKFHGPTEAAVEQVFMAQNPDSALKLGQARGAAIAALVNLDLQVA 60

Query: 105 EYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
           EY    IK++V+G G  DK+Q+ MM+  L+  +     DAADALA A+CHA+ + S
Sbjct: 61  EYTARQIKQSVVGYGAADKEQVQMMVMRLLNLTIKPQADAADALAAAICHAHASGS 116


>gi|169629968|ref|YP_001703617.1| crossover junction endodeoxyribonuclease RuvC [Mycobacterium
           abscessus ATCC 19977]
 gi|169241935|emb|CAM62963.1| Probable crossover junction endodeoxyribonuclease RuvC
           [Mycobacterium abscessus]
          Length = 169

 Score =  140 bits (353), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 51/112 (45%)

Query: 25  AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLK 84
           +G  +  +    + +   Q L  RL  + E +   ++  RP+  A+E+VF  ++    + 
Sbjct: 6   SGRKVVALDVDVVRTPANQPLPQRLLVISEVVEHWMETHRPDVVAIERVFAQQNVSTVMG 65

Query: 85  LGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPE 136
             QA  +  L  A   I V  + P+ +K AV G G  DK Q+  M+  ++  
Sbjct: 66  TAQAGGVIALCAAKRGIEVYFHTPSEVKAAVTGNGRADKSQVTAMVTRILNL 117


>gi|225164199|ref|ZP_03726474.1| Crossover junction endodeoxyribonuclease [Opitutaceae bacterium
           TAV2]
 gi|224801173|gb|EEG19494.1| Crossover junction endodeoxyribonuclease [Opitutaceae bacterium
           TAV2]
          Length = 195

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 47/152 (30%), Positives = 76/152 (50%), Gaps = 1/152 (0%)

Query: 7   IIGIDPGLRRTGWGIVD-VAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           ++GIDP LR TG  +V+  AG     +   T+    R  ++  L +++  +T  I  +  
Sbjct: 41  VLGIDPSLRGTGLALVEFAAGRRPLLLRCQTLRIPARVPMSGALAEIHRAVTTFITEFTV 100

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
              A+EQ    ++      LG AR  AI + A+    + EYAP  +K+AV+G G   K+Q
Sbjct: 101 RHVALEQTIYVQNFQTAQILGAARGAAIAAAAVLGKDIYEYAPLRVKQAVVGAGRASKEQ 160

Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYH 157
           +   +  L+        D ADA+ +A+CHAY 
Sbjct: 161 MARTVMALLGHGRPLASDEADAVGVALCHAYT 192


>gi|254413947|ref|ZP_05027715.1| hypothetical protein MC7420_4064 [Microcoleus chthonoplastes PCC
           7420]
 gi|196179083|gb|EDX74079.1| hypothetical protein MC7420_4064 [Microcoleus chthonoplastes PCC
           7420]
          Length = 164

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 41/151 (27%), Positives = 64/151 (42%), Gaps = 1/151 (0%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDV 59
           M      +GIDPGL   GW I+       +C +  GTI +    S   RL +L E L  +
Sbjct: 1   MNAEDTWLGIDPGLATVGWSILTTDSNGTVCLIDYGTIETEKTLSTPERLAELEEDLVTL 60

Query: 60  IKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVG 119
           ++ + P +AA+E  F ++   A   + QA  I  L        +      +  KA +G G
Sbjct: 61  MEEFEPTKAALEMPFFSRQIKAAGGVLQAVGIINLVCYREAEIIPVLLHQSSWKAHLGDG 120

Query: 120 HGDKKQIHMMLKMLMPESFFKGKDAADALAI 150
              K ++  +L  L         D+ DA+ I
Sbjct: 121 RASKGEVAEILSALFDLENLPVDDSVDAIGI 151


>gi|149197374|ref|ZP_01874425.1| crossover junction endodeoxyribonuclease RuvC [Lentisphaera
           araneosa HTCC2155]
 gi|149139392|gb|EDM27794.1| crossover junction endodeoxyribonuclease RuvC [Lentisphaera
           araneosa HTCC2155]
          Length = 151

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 38/131 (29%), Positives = 69/131 (52%), Gaps = 1/131 (0%)

Query: 25  AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLK 84
              ++  +  G + +  + S    L +L+  +T +I+ ++P+  ++E  F +K A   + 
Sbjct: 5   ENGSMNAIDCGVVKNKAKLSQLDCLKRLHVAITQLIELYKPDHISIEGTFYSKFAKTAMI 64

Query: 85  LGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESFFK-GKD 143
           LG AR   + + A   +PV EY+P   K+A+ G G   K+Q+  M+  ++     +   D
Sbjct: 65  LGMARGSVLSALAGTDLPVWEYSPKRAKQAITGSGDASKEQVAFMIAGILQADVSQINDD 124

Query: 144 AADALAIAVCH 154
           A DALA+AVCH
Sbjct: 125 ATDALALAVCH 135


>gi|320105197|ref|YP_004180788.1| Crossover junction endodeoxyribonuclease [Isosphaera pallida ATCC
           43644]
 gi|319752479|gb|ADV64239.1| Crossover junction endodeoxyribonuclease [Isosphaera pallida ATCC
           43644]
          Length = 221

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 51/170 (30%), Positives = 86/170 (50%), Gaps = 21/170 (12%)

Query: 6   RIIGIDPGLRRTGWGIVD----VAGDNL------------CFVSSGTIVSCVR---QSLA 46
           R++GIDPGL  TG+ +++    V    +              V +G I S      +SLA
Sbjct: 42  RVVGIDPGLGVTGYAVLEPGQVVDRSRVGLNGQPYCRPGPVVVEAGVIRSSRGGVGKSLA 101

Query: 47  FRLCQLYEGLTDVIKNWRPEEAAVEQVFVN-KDAVATLKLGQARAIAILSPALARIPVSE 105
            RL  L+ G+ DV+ ++ P+  A+EQV  + +     + +  AR + +L+  L  +PV  
Sbjct: 102 ARLAALHAGILDVLDSYPPQALALEQVHSHPRHPRTAILMAHARGVIVLAAQLRGVPVVG 161

Query: 106 YAPNTIKKAVIGVGHGDKKQIHMMLKM-LMPESFFKGKDAADALAIAVCH 154
           Y+ + IKK + G G   K+Q+   +++ L      +  D ADA A+A+CH
Sbjct: 162 YSASRIKKTLTGSGRAPKEQMQHAVRIELGLVRPPEPHDVADACAVALCH 211


>gi|282853889|ref|ZP_06263226.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes J139]
 gi|282583342|gb|EFB88722.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes J139]
 gi|314923585|gb|EFS87416.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL001PA1]
 gi|314966630|gb|EFT10729.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL082PA2]
 gi|314981359|gb|EFT25453.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL110PA3]
 gi|315092025|gb|EFT64001.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL110PA4]
 gi|315092848|gb|EFT64824.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL060PA1]
 gi|315103632|gb|EFT75608.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL050PA2]
 gi|315105681|gb|EFT77657.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL030PA1]
 gi|327327454|gb|EGE69230.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL103PA1]
          Length = 181

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 50/167 (29%), Positives = 83/167 (49%), Gaps = 12/167 (7%)

Query: 8   IGIDPGLRRTGWGIVDVAG------DNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           +G+DPGL R       V         +L  ++ G I +      A RL ++++GL +   
Sbjct: 1   MGVDPGLTRC-----GVGVVEGGLGSSLKLIAVGVIRTPADLDHAHRLLRIHDGLEEWRD 55

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
           + RP+  AVE+VF   +        QA  IA++  A   +PV+ + P+ +K A+ G G  
Sbjct: 56  HTRPDAIAVEKVFAQHNRNTVAGTAQAAGIAMMIAARHGLPVALHTPSEVKAAISGSGRA 115

Query: 122 DKKQIHMMLKMLMPES-FFKGKDAADALAIAVCHAYHANSGYYKIAS 167
           DK Q+  M+  ++  S   K  DAADA+A+A+CH +   +     A+
Sbjct: 116 DKAQVGFMVARVLRLSAPPKPADAADAVALAICHLWRGGAARRIEAA 162


>gi|284928974|ref|YP_003421496.1| Holliday junction endonuclease RuvC [cyanobacterium UCYN-A]
 gi|284809433|gb|ADB95138.1| Holliday junction endonuclease RuvC [cyanobacterium UCYN-A]
          Length = 162

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 41/151 (27%), Positives = 65/151 (43%), Gaps = 6/151 (3%)

Query: 6   RI-IGIDPGLRRTGWGIVDVAGDNLCF-VSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           RI +GIDPGL  TGW I+      +   V  G I +  + S + RL ++   L +++  +
Sbjct: 4   RIWLGIDPGLAITGWAILKAHTKTIPLIVDYGVIQTSKKLSTSQRLLEIEHDLVELLNEF 63

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALA-RI-PVSEYAPNTIKKAVIGVGHG 121
                ++E  F N+   A   + QA  +  L      +I PV  +  +   K  IG G  
Sbjct: 64  NFYGISIEMPFFNRTIKAAGGVIQAVGVINLVCYRETQIQPVFLHQAS--WKRHIGSGRA 121

Query: 122 DKKQIHMMLKMLMPESFFKGKDAADALAIAV 152
            K  +   +  L         D+ DA+AIA 
Sbjct: 122 TKDSVAQTVSQLFNLQTIPIDDSVDAIAIAY 152


>gi|292670921|ref|ZP_06604347.1| crossover junction endoribonuclease subunit C [Selenomonas noxia
           ATCC 43541]
 gi|292647542|gb|EFF65514.1| crossover junction endoribonuclease subunit C [Selenomonas noxia
           ATCC 43541]
          Length = 126

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 30/98 (30%), Positives = 53/98 (54%)

Query: 43  QSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIP 102
            ++  RL ++Y  L  +I+ + P+   VEQ+F N++    + +GQAR I +L+ A   IP
Sbjct: 1   MAVEKRLLKIYTELEVLIQKYAPDAMGVEQLFFNRNVTTAIPVGQARGIVLLAAAQNNIP 60

Query: 103 VSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESFFK 140
           + E  P  +K++V G G   K+Q+  M+  L+      
Sbjct: 61  IVERTPLQVKQSVTGYGKATKEQVIYMVTKLLNLPAPP 98


>gi|289428319|ref|ZP_06430006.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes J165]
 gi|289158468|gb|EFD06684.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes J165]
 gi|313764322|gb|EFS35686.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL013PA1]
 gi|313772295|gb|EFS38261.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL074PA1]
 gi|313792008|gb|EFS40109.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL110PA1]
 gi|313802042|gb|EFS43276.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL110PA2]
 gi|313807653|gb|EFS46140.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL087PA2]
 gi|313810160|gb|EFS47881.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL083PA1]
 gi|313812812|gb|EFS50526.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL025PA1]
 gi|313815860|gb|EFS53574.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL059PA1]
 gi|313818690|gb|EFS56404.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL046PA2]
 gi|313820460|gb|EFS58174.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL036PA1]
 gi|313822734|gb|EFS60448.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL036PA2]
 gi|313825332|gb|EFS63046.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL063PA1]
 gi|313827627|gb|EFS65341.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL063PA2]
 gi|313830491|gb|EFS68205.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL007PA1]
 gi|313833527|gb|EFS71241.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL056PA1]
 gi|313838863|gb|EFS76577.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL086PA1]
 gi|314915312|gb|EFS79143.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL005PA4]
 gi|314918137|gb|EFS81968.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL050PA1]
 gi|314920214|gb|EFS84045.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL050PA3]
 gi|314925069|gb|EFS88900.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL036PA3]
 gi|314931737|gb|EFS95568.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL067PA1]
 gi|314955638|gb|EFT00040.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL027PA1]
 gi|314958034|gb|EFT02137.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL002PA1]
 gi|314960394|gb|EFT04496.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL002PA2]
 gi|314962664|gb|EFT06764.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL082PA1]
 gi|314967470|gb|EFT11569.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL037PA1]
 gi|314973491|gb|EFT17587.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL053PA1]
 gi|314976171|gb|EFT20266.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL045PA1]
 gi|314978570|gb|EFT22664.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL072PA2]
 gi|314983807|gb|EFT27899.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL005PA1]
 gi|314987988|gb|EFT32079.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL005PA2]
 gi|314989798|gb|EFT33889.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL005PA3]
 gi|315077880|gb|EFT49931.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL053PA2]
 gi|315080505|gb|EFT52481.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL078PA1]
 gi|315084176|gb|EFT56152.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL027PA2]
 gi|315085519|gb|EFT57495.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL002PA3]
 gi|315088424|gb|EFT60400.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL072PA1]
 gi|315096038|gb|EFT68014.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL038PA1]
 gi|315098666|gb|EFT70642.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL059PA2]
 gi|315101331|gb|EFT73307.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL046PA1]
 gi|315108549|gb|EFT80525.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL030PA2]
 gi|327326318|gb|EGE68108.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL096PA2]
 gi|327330389|gb|EGE72138.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL097PA1]
 gi|327331807|gb|EGE73544.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL096PA3]
 gi|327443584|gb|EGE90238.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL013PA2]
 gi|327445788|gb|EGE92442.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL043PA2]
 gi|327448229|gb|EGE94883.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL043PA1]
 gi|327450650|gb|EGE97304.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL087PA3]
 gi|327453273|gb|EGE99927.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL092PA1]
 gi|327454012|gb|EGF00667.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL083PA2]
 gi|328753270|gb|EGF66886.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL025PA2]
 gi|328753339|gb|EGF66955.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL020PA1]
 gi|328754068|gb|EGF67684.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL087PA1]
 gi|328760720|gb|EGF74286.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL099PA1]
          Length = 181

 Score =  137 bits (346), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 49/167 (29%), Positives = 82/167 (49%), Gaps = 12/167 (7%)

Query: 8   IGIDPGLRRTGWGIVDVAG------DNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           +G+DPGL R       V          L  ++ G I +      A RL ++++GL +   
Sbjct: 1   MGVDPGLTRC-----GVGVVEGGLGSPLKLIAVGVIRTPADLDHAHRLLRIHDGLEEWRD 55

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
           + RP+  AVE+VF   +        QA  +A++  A   +PV+ + P+ +K A+ G G  
Sbjct: 56  HTRPDAVAVEKVFAQHNRNTVTGTAQAAGMAMMIAARHGLPVALHTPSEVKAAISGSGRA 115

Query: 122 DKKQIHMMLKMLMPES-FFKGKDAADALAIAVCHAYHANSGYYKIAS 167
           DK Q+  M+  ++  S   K  DAADA+A+A+CH +   +     A+
Sbjct: 116 DKAQVGFMVARVLRLSAPPKPADAADAVALAICHLWRGGAARRIEAA 162


>gi|329120925|ref|ZP_08249557.1| crossover junction endoribonuclease subunit C [Dialister
           micraerophilus DSM 19965]
 gi|327471384|gb|EGF16835.1| crossover junction endoribonuclease subunit C [Dialister
           micraerophilus DSM 19965]
          Length = 129

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 30/97 (30%), Positives = 57/97 (58%)

Query: 4   SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           ++R +GIDPG  R G+GIVD  G+++  V  G I +    SL+ RL  ++ G+ ++I+ +
Sbjct: 33  NMRALGIDPGTGRCGFGIVDKKGNSISAVDYGVIETTKEYSLSERLNIIFTGVNELIEIY 92

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALAR 100
           +P+   +E ++ NK+    + + QAR +  L+    +
Sbjct: 93  KPDVMGIETLYFNKNITTAISVAQARGVIQLAGFQKK 129


>gi|170077253|ref|YP_001733891.1| Holliday juction resolvase [Synechococcus sp. PCC 7002]
 gi|169884922|gb|ACA98635.1| Holliday juction resolvase [Synechococcus sp. PCC 7002]
          Length = 160

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 34/142 (23%), Positives = 60/142 (42%), Gaps = 1/142 (0%)

Query: 6   RIIGIDPGLRRTGWGIVDVAGDNL-CFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           R +GIDPGL   GW +++  G  L   +  G I +    S   RL ++ +  T+++  + 
Sbjct: 3   RWLGIDPGLAIIGWAVLEEQGQTLPQILDYGIIETAKDLSTPQRLLEIEQDYTEILGEFH 62

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           PE  A+E  F ++   A   + Q   I  L           Y   +  K  IG    DK+
Sbjct: 63  PEAIAIEMPFFSRQIKAAGGVLQGLGILNLVSLRELNIEPIYLHQSSWKCHIGNAKADKR 122

Query: 125 QIHMMLKMLMPESFFKGKDAAD 146
           ++  +++ +         D+ D
Sbjct: 123 EVATLVQSIFGMETMPIDDSVD 144


>gi|206895287|ref|YP_002247235.1| crossover junction endodeoxyribonuclease RuvC (Hollidayjunction
           nuclease ruvC) (Holliday junction resolvase ruvC)
           [Coprothermobacter proteolyticus DSM 5265]
 gi|206737904|gb|ACI16982.1| crossover junction endodeoxyribonuclease RuvC (Hollidayjunction
           nuclease ruvC) (Holliday junction resolvase ruvC)
           [Coprothermobacter proteolyticus DSM 5265]
          Length = 159

 Score =  135 bits (342), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 41/160 (25%), Positives = 67/160 (41%), Gaps = 10/160 (6%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + + G+DPG  R G  ++D    N   V    +          R   +   +  +   + 
Sbjct: 1   MVVFGVDPGSTRVGLALLDDESRNWLHVQCLELT---GLPEHLRYTTIERYVGALCDVFN 57

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           PEE A+E++   K+    L++ + R +  L      I V EY P  +K    G GH +K 
Sbjct: 58  PEEMAIEKLIWGKNRNNLLQISECRGVVKLVAYKRAIKVFEYFPTEVKSFTTGYGHEEKA 117

Query: 125 QIHMMLKMLMPESF----FKGKDAADALAIAVCHAYHANS 160
            I   ++ L  E+         DA+DA+AIA  H    N+
Sbjct: 118 GI---VRTLQAETGFDLLPLFDDASDAMAIAWIHVLMRNN 154


>gi|224370136|ref|YP_002604300.1| RuvC [Desulfobacterium autotrophicum HRM2]
 gi|223692853|gb|ACN16136.1| RuvC [Desulfobacterium autotrophicum HRM2]
          Length = 164

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 34/140 (24%), Positives = 67/140 (47%), Gaps = 1/140 (0%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           M   +++IG+DPGL  TG G+++  G ++   S G+I +        RL  ++  + D +
Sbjct: 1   MSLMVKVIGLDPGLAGTGIGVIEGRGTDIADYSFGSISTHKDDPTHSRLNTIFTRVCDFL 60

Query: 61  KNWRPEEAAVEQVF-VNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVG 119
              +P+   +E VF + K   + + LG+   + +++   A   V E +    K+ V G G
Sbjct: 61  CQEKPDLVVIEDVFSLEKYPGSGIMLGKVSGVLLVAAFKAGARVEELSVREAKRVVTGSG 120

Query: 120 HGDKKQIHMMLKMLMPESFF 139
             DK Q+   ++ ++     
Sbjct: 121 SADKNQVEKSVRNILNHPHP 140


>gi|227488785|ref|ZP_03919101.1| crossover junction endodeoxyribonuclease [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227091207|gb|EEI26519.1| crossover junction endodeoxyribonuclease [Corynebacterium
           glucuronolyticum ATCC 51867]
          Length = 175

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 52/96 (54%)

Query: 45  LAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVS 104
           +  RL +LYE +TD I  ++P+  A+E++F   +    L    A  + IL+ + A + V 
Sbjct: 1   MGDRLKELYEAITDWIAEYKPDVVAMERLFERGEVSTVLHTAHAVGVLILAASQANLDVH 60

Query: 105 EYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESFFK 140
           EY P+ +KKA+ G G  DKKQ+  M+  ++      
Sbjct: 61  EYTPSQVKKAITGNGRADKKQMTAMVTRILGLENPP 96


>gi|239917791|ref|YP_002957349.1| Holliday junction endonuclease RuvC [Micrococcus luteus NCTC 2665]
 gi|239838998|gb|ACS30795.1| Holliday junction endonuclease RuvC [Micrococcus luteus NCTC 2665]
          Length = 211

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 41/133 (30%), Positives = 63/133 (47%), Gaps = 1/133 (0%)

Query: 11  DPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAA 69
           DPGL R G  +VDV        V      +     L  RL ++ E ++ V+   RP+ AA
Sbjct: 2   DPGLTRCGIAVVDVDARRRAALVHVEVAGTPPTAPLDERLLRIDEAVSAVLAAHRPDRAA 61

Query: 70  VEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMM 129
           VE++F N +    L   QA  +AI + A A +PV  + P+ +K AV G G   K+Q+  M
Sbjct: 62  VERMFANTNTPTVLGTAQAAGVAIAAAARAGVPVGLHTPSEVKAAVTGHGDAGKEQVTTM 121

Query: 130 LKMLMPESFFKGK 142
           +  ++        
Sbjct: 122 VTRILRLDAPPRP 134


>gi|297517034|ref|ZP_06935420.1| Holliday junction resolvase [Escherichia coli OP50]
          Length = 90

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 40/88 (45%), Positives = 60/88 (68%), Gaps = 1/88 (1%)

Query: 7  IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
          I+GIDPG R TG+G++   G  L ++ SG I + V   L  RL  +Y G+T++I  ++P+
Sbjct: 4  ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQPD 62

Query: 67 EAAVEQVFVNKDAVATLKLGQARAIAIL 94
            A+EQVF+ K+A + LKLGQAR +AI+
Sbjct: 63 YFAIEQVFMAKNADSALKLGQARGVAIV 90


>gi|281413716|ref|ZP_06245458.1| Holliday junction endonuclease RuvC [Micrococcus luteus NCTC 2665]
          Length = 193

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 41/133 (30%), Positives = 63/133 (47%), Gaps = 1/133 (0%)

Query: 11  DPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAA 69
           DPGL R G  +VDV        V      +     L  RL ++ E ++ V+   RP+ AA
Sbjct: 2   DPGLTRCGIAVVDVDARRRAALVHVEVAGTPPTAPLDERLLRIDEAVSAVLAAHRPDRAA 61

Query: 70  VEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMM 129
           VE++F N +    L   QA  +AI + A A +PV  + P+ +K AV G G   K+Q+  M
Sbjct: 62  VERMFANTNTPTVLGTAQAAGVAIAAAARAGVPVGLHTPSEVKAAVTGHGDAGKEQVTTM 121

Query: 130 LKMLMPESFFKGK 142
           +  ++        
Sbjct: 122 VTRILRLDAPPRP 134


>gi|313837774|gb|EFS75488.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL037PA2]
 gi|314927344|gb|EFS91175.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL044PA1]
 gi|314972426|gb|EFT16523.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           acnes HL037PA3]
 gi|328907429|gb|EGG27195.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
           sp. P08]
          Length = 181

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 46/158 (29%), Positives = 79/158 (50%), Gaps = 12/158 (7%)

Query: 8   IGIDPGLRRTGWGIVDVAGDNL------CFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           +G+DPGL R       V             ++ G I +      A RL ++++GL +   
Sbjct: 1   MGVDPGLTRC-----GVGVVEGGLGVPVKLIAVGVIRTPADLDHAHRLLRIHDGLEEWRD 55

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
           + RP+  A+E+VF   +        QA  +A++  A   +PV+ + P+ +K A+ G G  
Sbjct: 56  HTRPDAIAIEKVFAQHNRNTVTGTAQAAGMAMMIAARHGLPVALHTPSEVKAAISGSGRA 115

Query: 122 DKKQIHMMLKMLMPES-FFKGKDAADALAIAVCHAYHA 158
           DK Q+ +M+  ++  S   K  DAADA+A+A+CH +  
Sbjct: 116 DKAQVGLMVARVLRLSAPPKPADAADAVALAICHLWRG 153


>gi|297183319|gb|ADI19456.1| holliday junction resolvasome, endonuclease subunit [uncultured
           bacterium HF0500_16O16]
          Length = 132

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 40/111 (36%), Positives = 62/111 (55%), Gaps = 1/111 (0%)

Query: 52  LYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTI 111
           +++G+ +V++  +P+  A+E  F  KDA A  KLG+AR +  L+  L  I    Y+P  I
Sbjct: 1   MFDGVNEVLQTHKPDAVAIEGSFYGKDADAAAKLGEARGVLRLAVTLTGIESVVYSPAEI 60

Query: 112 KKAVIGVGHGDKKQIHMML-KMLMPESFFKGKDAADALAIAVCHAYHANSG 161
           KKA+ G G   K+ +  M+ + L  +      DA+DALAIA+CH     S 
Sbjct: 61  KKALTGNGQATKESVQYMVAQTLKMKKLPTPLDASDALAIALCHLQRPASS 111


>gi|169836416|ref|ZP_02869604.1| crossover junction endodeoxyribonuclease RuvC [candidate division
           TM7 single-cell isolate TM7a]
          Length = 99

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 26/94 (27%), Positives = 46/94 (48%)

Query: 27  DNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLG 86
                VS+G + +     L  RL ++Y  L ++I    P+  +VE++F  K+    + + 
Sbjct: 4   GKYKMVSAGVVRTPPHTPLPDRLEEIYNSLKEIIHETNPDIMSVEKLFFAKNVTTAISVS 63

Query: 87  QARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
            AR + +L+   A I ++EY P  IK  + G G 
Sbjct: 64  HARGVVLLTAKQAGIKIAEYTPLQIKNTLTGYGK 97


>gi|163937883|ref|YP_001642769.1| crossover junction endodeoxyribonuclease RuvC [Bacillus
           weihenstephanensis KBAB4]
 gi|163865738|gb|ABY46794.1| crossover junction endodeoxyribonuclease RuvC [Bacillus
           weihenstephanensis KBAB4]
          Length = 166

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 39/159 (24%), Positives = 69/159 (43%), Gaps = 5/159 (3%)

Query: 4   SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           S R +G+D  L   G  I+D+    L  V    I +  +Q    RL ++   L  ++  +
Sbjct: 3   SRRFLGLDMSLASAGIAIIDIVDGELRIVHKQRIKTNPKQRHGERLHKIATELKSILIEY 62

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           +P +  + +   ++ A  T  L +   ++ L        + E +P TIK  + G G  DK
Sbjct: 63  QPFDTIIREQGFSRFAKTTQALFKVVGVSDLVL--RDYAIVEISPTTIKLVMTGDGKADK 120

Query: 124 KQIHMMLKMLMPES---FFKGKDAADALAIAVCHAYHAN 159
           K++   ++ +M       F   D +DA AI + H    N
Sbjct: 121 KEVEKAVRKIMRLDDDYIFISDDESDACAIILTHLIQNN 159


>gi|329945622|ref|ZP_08293355.1| crossover junction endodeoxyribonuclease [Actinomyces sp. oral
           taxon 170 str. F0386]
 gi|328528625|gb|EGF55590.1| crossover junction endodeoxyribonuclease [Actinomyces sp. oral
           taxon 170 str. F0386]
          Length = 189

 Score =  127 bits (320), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 38/134 (28%), Positives = 67/134 (50%), Gaps = 1/134 (0%)

Query: 27  DNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLG 86
             +  V  G + +   QS   RL  + E + D I    P   ++E+VF   +  + + + 
Sbjct: 7   RQVRLVEVGVVRTPPSQSPELRLLTITETIEDWIARLGPSVVSIERVFAQDNLRSVIGVA 66

Query: 87  QARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMML-KMLMPESFFKGKDAA 145
           Q    A+ + A + + V+++ P+  K AV G G  DK Q+  M+ ++L  ++  +  DAA
Sbjct: 67  QVMGTAMATAARSGLEVAQHTPSEAKAAVTGSGTADKTQVQAMVTRVLGLDAPPRPADAA 126

Query: 146 DALAIAVCHAYHAN 159
           DALA A+CH +   
Sbjct: 127 DALAQAICHGWRGG 140


>gi|99034737|ref|ZP_01314667.1| hypothetical protein Wendoof_01000516 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 110

 Score =  126 bits (318), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 42/109 (38%), Positives = 67/109 (61%), Gaps = 1/109 (0%)

Query: 56  LTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAV 115
           + + I  + P EAAVE++ + K   ++L LG AR + IL+  + ++ ++EY  N +KK++
Sbjct: 3   IKESISLYSPNEAAVEKILLIKS-KSSLTLGYARGVVILALKITKLTMNEYDANYVKKSI 61

Query: 116 IGVGHGDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYK 164
            G GH DK QI  M+K ++     K   AADALA+A+CHAY   S + +
Sbjct: 62  TGNGHADKDQIIFMVKQIVKNLSIKCHHAADALAVAICHAYTKGSCFVE 110


>gi|167945544|ref|ZP_02532618.1| crossover junction endodeoxyribonuclease RuvC [Endoriftia
          persephone 'Hot96_1+Hot96_2']
          Length = 94

 Score =  126 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 39/91 (42%), Positives = 57/91 (62%), Gaps = 1/91 (1%)

Query: 5  IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
          +RI+GIDPG R TG+G++D  G     V  GT+       L  RL +++  L++VI+ +R
Sbjct: 2  LRILGIDPGSRVTGFGVIDSDGVRSSHVVHGTLRLEGNA-LPPRLGEIFSRLSEVIETYR 60

Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILS 95
          P+  A+EQVFV K+  + LKLGQ R  AI +
Sbjct: 61 PQVMAIEQVFVAKNPQSALKLGQVRGAAICA 91


>gi|298252761|ref|ZP_06976555.1| Holliday junction resolvasome, endonuclease subunit [Gardnerella
           vaginalis 5-1]
 gi|297533125|gb|EFH72009.1| Holliday junction resolvasome, endonuclease subunit [Gardnerella
           vaginalis 5-1]
          Length = 161

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 52/106 (49%)

Query: 37  IVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSP 96
           + S    S   RL ++Y GL + I+ + P+  ++E+VF  ++    L   Q   IA+L+ 
Sbjct: 2   LRSEPDLSQDLRLLKIYNGLVEKIERFSPDTVSIERVFAQENRNTVLGTAQVAGIAMLAA 61

Query: 97  ALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESFFKGK 142
           A   IPV+ + P  +K AV G G   K Q+  M+  L+  +     
Sbjct: 62  AQRNIPVALHTPTEVKLAVAGNGKAQKPQVERMVARLLGLNVLPTP 107


>gi|225631047|ref|ZP_03787789.1| crossover junction endodeoxyribonuclease RuvC [Wolbachia
           endosymbiont of Muscidifurax uniraptor]
 gi|225591255|gb|EEH12395.1| crossover junction endodeoxyribonuclease RuvC [Wolbachia
           endosymbiont of Muscidifurax uniraptor]
          Length = 108

 Score =  123 bits (311), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 41/106 (38%), Positives = 68/106 (64%), Gaps = 1/106 (0%)

Query: 5   IRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           ++IIG+DPG+ +TGW I+ +   +N+ F+  GTI +  +     RL  ++E L  VI  +
Sbjct: 2   VKIIGLDPGISKTGWAIISLNEKNNIEFLGGGTISTDGKLGTGERLHTIFEQLKKVISLY 61

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPN 109
            P EAAVE++FVNK+  ++L LG AR + IL+  + ++ ++EY  N
Sbjct: 62  SPNEAAVEKIFVNKNPKSSLTLGYARGVVILALKITKLTMNEYDAN 107


>gi|172055297|ref|YP_001806624.1| putative RuvC-like Holliday junction resolvase [Cyanothece sp. ATCC
           51142]
 gi|171701578|gb|ACB54558.1| putative RuvC-like Holliday junction resolvase [Cyanothece sp. ATCC
           51142]
          Length = 216

 Score =  123 bits (311), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 31/150 (20%), Positives = 62/150 (41%), Gaps = 4/150 (2%)

Query: 6   RIIGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           R +GI P +   GW +++         V  G I +     L +RL ++   L +++  ++
Sbjct: 60  RWLGIKPSISNLGWAVIEGEPTEEPNMVDFGLIETDSHDPLPYRLGEIETDLREILVEYQ 119

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALAR-IPVSEYAPNTIKKAVIGVGHGDK 123
           P   A+EQ F+  +  +T KL Q   +  L       +P   Y      K+ +     ++
Sbjct: 120 PNHIAIEQPFIKAEYPSTTKLLQVLGVVNLVAYRHGCLPTMIYPAT--WKSNLDHPKAER 177

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVC 153
           + +  +++ L            DA+A+A  
Sbjct: 178 EDLSAIVEELFDLQSILLNQEVDAIAVAYT 207


>gi|320534405|ref|ZP_08034888.1| crossover junction endodeoxyribonuclease [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320133380|gb|EFW25845.1| crossover junction endodeoxyribonuclease [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 178

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 37/128 (28%), Positives = 61/128 (47%), Gaps = 1/128 (0%)

Query: 33  SSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIA 92
             G + +   QS   RL  + E + D I    P   ++E+VF   +  + + + Q    A
Sbjct: 2   EVGVVRTPPSQSPELRLLTITEAIEDWIARLGPTVVSIERVFAQDNLRSVIGVAQVMGTA 61

Query: 93  ILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESFFK-GKDAADALAIA 151
           + + A A + V+++ P+  K AV G G  DK Q+  M+  ++         DAADALA A
Sbjct: 62  MTTAARAGLEVAQHTPSEAKAAVTGSGIADKAQVQTMVTRILGLDAPPRPADAADALAQA 121

Query: 152 VCHAYHAN 159
           +CH +   
Sbjct: 122 ICHGWRGG 129


>gi|269219376|ref|ZP_06163230.1| crossover junction endodeoxyribonuclease RuvC [Actinomyces sp. oral
           taxon 848 str. F0332]
 gi|269211169|gb|EEZ77509.1| crossover junction endodeoxyribonuclease RuvC [Actinomyces sp. oral
           taxon 848 str. F0332]
          Length = 197

 Score =  121 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 33/124 (26%), Positives = 60/124 (48%), Gaps = 1/124 (0%)

Query: 20  GIVDVAG-DNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKD 78
           G VD  G   +  V    + S    +   RL  + +GL  VI  ++P+  AVE+VF   +
Sbjct: 2   GTVDAGGARRVSLVDMRVVRSPAELAPHKRLLIIADGLQKVIDAFKPDVVAVERVFAQSN 61

Query: 79  AVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESF 138
             +     Q   I +L+ A A + ++ + P+ +K AV G G  DK+Q+ +M++ ++  + 
Sbjct: 62  VRSVTGTAQVAGIVMLAAARAGLRLAMHTPSEVKAAVTGNGRADKRQVQVMVQRILGLAS 121

Query: 139 FKGK 142
               
Sbjct: 122 LPRP 125


>gi|225076157|ref|ZP_03719356.1| hypothetical protein NEIFLAOT_01189 [Neisseria flavescens
           NRL30031/H210]
 gi|224952500|gb|EEG33709.1| hypothetical protein NEIFLAOT_01189 [Neisseria flavescens
           NRL30031/H210]
          Length = 107

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 35/87 (40%), Positives = 51/87 (58%)

Query: 73  VFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKM 132
           +FVN +  ATL LGQAR  AI +  +  +PV EY    +K+AV+G G   K+Q+  M+  
Sbjct: 1   MFVNVNPAATLMLGQARGAAIAALVMHDLPVFEYTALQVKQAVVGKGKAAKEQVQHMVVQ 60

Query: 133 LMPESFFKGKDAADALAIAVCHAYHAN 159
           ++  S     DAAD LA+A+ HA   +
Sbjct: 61  MLALSGTPQADAADGLAVALTHALRNH 87


>gi|227504980|ref|ZP_03935029.1| Holliday junction resolvase [Corynebacterium striatum ATCC 6940]
 gi|227198430|gb|EEI78478.1| Holliday junction resolvase [Corynebacterium striatum ATCC 6940]
          Length = 160

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 41/137 (29%), Positives = 71/137 (51%), Gaps = 2/137 (1%)

Query: 33  SSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIA 92
           + G   +   + L  RL +L   + + +++++P+  A+E+VF   +    ++      + 
Sbjct: 2   AVGVARTPSDKELTERLLRLSIAVKEWMEDYKPDVIAIERVFERGEVSTVMQTAHVVGVV 61

Query: 93  ILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPE-SFFKGKDAADALAIA 151
           +L+ A   IPV  Y P+ +KKA+ G G  DKKQ+  M+  ++      K  DAADALA+A
Sbjct: 62  VLAAAERDIPVHMYTPSEVKKAISGNGRADKKQMTAMITRILGLGEPPKPADAADALALA 121

Query: 152 VCHAYHANSGYYKIASQ 168
           VCH + A     +I   
Sbjct: 122 VCHCWRAP-ALARIGQN 137


>gi|310830401|ref|YP_003965502.1| Crossover junction endodeoxyribonuclease ruvC [Paenibacillus
           polymyxa SC2]
 gi|309249868|gb|ADO59434.1| Crossover junction endodeoxyribonuclease ruvC [Paenibacillus
           polymyxa SC2]
          Length = 194

 Score =  118 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 38/162 (23%), Positives = 71/162 (43%), Gaps = 16/162 (9%)

Query: 15  RRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVF 74
              G+ ++ + G+ L  + SGTI +  + SL  R+  +Y  LT++   + P+    E++F
Sbjct: 19  ANCGFSVIQLIGNELLVLKSGTIETDSKLSLPQRISLIYSLLTELANTYNPKIIGCEKLF 78

Query: 75  VN------------KDAVATL-KLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
            N            ++  A++        +  L     +I + ++ P T+KK V G G  
Sbjct: 79  FNPRQRVPSDGKKGRNKSASIVMTNMVTGVVHLIAGQKQIMLRDFVPGTVKKYVAGNGRA 138

Query: 122 DKKQIHMMLKMLMPESFFKGKDAADALAIAVC--HAYHANSG 161
            K+ +   +K L+     K +  ADA AI +     Y   +G
Sbjct: 139 TKENVIAAVKYLLQREDVK-EHEADATAIGITAVKFYRDTNG 179


>gi|325068882|ref|ZP_08127555.1| Holliday junction resolvase [Actinomyces oris K20]
          Length = 106

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 49/105 (46%)

Query: 33  SSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIA 92
             G + +   QS   RL  + E + D I    P   ++E+VF   +  + + + Q    A
Sbjct: 2   EVGVVRTPPSQSPELRLLTITEAIEDWIARLGPSVVSIERVFAQDNLRSVIGVAQVMGTA 61

Query: 93  ILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPES 137
           + + A A + V+++ P+  K AV G G  DK Q+  M+  ++   
Sbjct: 62  MATAARAGLEVAQHTPSEAKAAVTGSGTADKAQVQAMVTRILGLD 106


>gi|172034829|ref|YP_001798606.1| putative RuvC-like Holliday junction resolvase [Cyanothece sp. ATCC
           51142]
 gi|171701593|gb|ACB54572.1| putative RuvC-like Holliday junction resolvase [Cyanothece sp. ATCC
           51142]
          Length = 215

 Score =  116 bits (293), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 36/152 (23%), Positives = 67/152 (44%), Gaps = 10/152 (6%)

Query: 6   RIIGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           R +GI P + + GW I++         V  G I +     L  RL ++   L ++IK+++
Sbjct: 59  RWLGIKPSISQLGWAILEGETTEDPQMVDFGLISTNSDDPLPCRLAEIEADLQEIIKDYQ 118

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTI----KKAVIGVGH 120
           P + A+E+ F+N +  +T KL Q   +  L             P  +     K+ +    
Sbjct: 119 PTQIAIEKTFINPEFPSTAKLLQVLGVLNLVAYRHG-----CLPLMVNPATWKSNLDNPK 173

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAV 152
            +++ I  +L+ +   +  K     DA+AIA 
Sbjct: 174 AEREDIADILEQMFYLNPLKRDAQVDAIAIAY 205


>gi|218290751|ref|ZP_03494833.1| Holliday junction resolvasome endonuclease subunit-like protein
           [Alicyclobacillus acidocaldarius LAA1]
 gi|218239289|gb|EED06488.1| Holliday junction resolvasome endonuclease subunit-like protein
           [Alicyclobacillus acidocaldarius LAA1]
          Length = 210

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 34/126 (26%), Positives = 59/126 (46%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+GID G R  GW ++D+ GD   ++  G I      +L   +  L+  + ++I+N+ 
Sbjct: 1   MRILGIDHGTRYAGWAVLDIKGDKHEWLGYGLITLTDEDTLDATMGALHTSVENLIQNYE 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           P   A+E+    +    T  L +    A L+  L  IP+ +  P  +K    G G  +K 
Sbjct: 61  PTIVALEEPMAMRSGKVTRVLIEMYTTARLAAVLRHIPIIDVTPQKLKLYTAGHGGAEKD 120

Query: 125 QIHMML 130
            +   L
Sbjct: 121 DVARAL 126


>gi|255068675|ref|ZP_05320530.1| crossover junction endodeoxyribonuclease RuvC [Neisseria sicca
          ATCC 29256]
 gi|255047075|gb|EET42539.1| crossover junction endodeoxyribonuclease RuvC [Neisseria sicca
          ATCC 29256]
          Length = 82

 Score =  114 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 34/82 (41%), Positives = 55/82 (67%)

Query: 1  MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
          M  ++RI+GIDPG R TG+G++DV G +  +V+SG I +     LA R+  +   + +V+
Sbjct: 1  MAATVRILGIDPGSRVTGFGVIDVRGRDHFYVASGCIKTPADAPLADRIAVIVRHIGEVV 60

Query: 61 KNWRPEEAAVEQVFVNKDAVAT 82
            ++P++AAVEQVFVN +  +T
Sbjct: 61 AVYKPQQAAVEQVFVNVNPAST 82


>gi|218680786|ref|ZP_03528683.1| Holliday junction resolvase [Rhizobium etli CIAT 894]
          Length = 113

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 75/110 (68%), Positives = 90/110 (81%)

Query: 57  TDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVI 116
            +V+  ++P+EAAVEQ FVNKDAVATLKLGQAR IA+L PA A + VSEYAPN +KKAVI
Sbjct: 1   AEVVHAYKPDEAAVEQTFVNKDAVATLKLGQARGIAMLVPARAGLHVSEYAPNAVKKAVI 60

Query: 117 GVGHGDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
           GVGHG+K QIHMMLK+LMP+  FKG DAADALAIA+CHA++  S   + A
Sbjct: 61  GVGHGEKHQIHMMLKILMPKVEFKGDDAADALAIAICHAHNRGSNRMRQA 110


>gi|311068886|ref|YP_003973809.1| crossover junction endodeoxyribonuclease RuvC [Bacillus atrophaeus
           1942]
 gi|310869403|gb|ADP32878.1| crossover junction endodeoxyribonuclease RuvC [Bacillus atrophaeus
           1942]
          Length = 167

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 43/160 (26%), Positives = 76/160 (47%), Gaps = 11/160 (6%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSC--VRQSLAFRLCQLYEGLTDVIKN 62
           + II  D  L  TG+ + +V G +L  +  G+I +    ++S  FRL  + + +  + K 
Sbjct: 1   MIIIAFDLSLSNTGYAVGEVKGRSLKLIEVGSIGTKRFAKRSTGFRLNYIAKEIRGLYKK 60

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALAR-IPVSEYAPNTIKKAVIGVGHG 121
           +  ++   E+ F N   VAT ++ +   +  L   +A     SE  P +IKK + G G  
Sbjct: 61  YEIDKVVKERSFSNARIVATQQIYKVNGVFELMTHIANHDDFSEITPPSIKKQLTGNGKA 120

Query: 122 DKKQIHMML----KMLMPES--FFKGKDAADALA--IAVC 153
            K ++   +    + +M  +   FK  D +DA+A  IA C
Sbjct: 121 TKNEVADAVLKQFRDIMGNTTVKFKNNDESDAVAVLIAYC 160


>gi|254496521|ref|ZP_05109392.1| truncated crossover junction endodeoxyribonuclease ruvC [Legionella
           drancourtii LLAP12]
 gi|254354260|gb|EET12924.1| truncated crossover junction endodeoxyribonuclease ruvC [Legionella
           drancourtii LLAP12]
          Length = 118

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 42/101 (41%), Positives = 69/101 (68%)

Query: 60  IKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVG 119
           + ++ PEE A+EQVF++++  + LKLG AR +A+++ A  R+ VSEY+   IK+ V+G G
Sbjct: 1   MDHYSPEEVAIEQVFMHQNPNSALKLGHARGVAMVAAASHRVNVSEYSARAIKQTVVGYG 60

Query: 120 HGDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
             +K Q++ M+  L+  +     DAADALAIA+CH++  +S
Sbjct: 61  AAEKTQVNHMVVSLLSLNSAPQSDAADALAIAICHSHMRHS 101


>gi|289706229|ref|ZP_06502592.1| crossover junction endodeoxyribonuclease [Micrococcus luteus SK58]
 gi|289557068|gb|EFD50396.1| crossover junction endodeoxyribonuclease [Micrococcus luteus SK58]
          Length = 200

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 33/116 (28%), Positives = 54/116 (46%)

Query: 27  DNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLG 86
                V      +    SL  RL ++ E ++ V+   RP+ AAVE++F N +    L   
Sbjct: 8   RRAALVHVEVAGTPPTASLDQRLLRIDEAVSAVLVAHRPDRAAVERMFANTNTPTVLGTA 67

Query: 87  QARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESFFKGK 142
           QA  +AI + A A +PV  + P+ +K AV G G   K+Q+  M+  ++        
Sbjct: 68  QAAGVAIAAAARAGVPVGLHTPSEVKAAVTGHGDAGKEQVTTMVTRILRLDAPPRP 123


>gi|124516216|gb|EAY57724.1| probable crossover junction endodeoxyribonuclease (RuvC)
           [Leptospirillum rubarum]
          Length = 158

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 35/147 (23%), Positives = 65/147 (44%), Gaps = 3/147 (2%)

Query: 8   IGIDPGLRRTGWGIVDVAG-DNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           +G+DPGL  TG+ +++    D L  ++ GT+ +     ++ R+  L++ L  ++  +  +
Sbjct: 2   LGVDPGLAATGFAVLEGPSLDRLRVLAQGTVRTEPAFPVSRRIGILFDRLDGLLSEYPVK 61

Query: 67  EAAVEQVFVNK-DAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
             A+E  F  +    A L LG    I  L      IP+   +P  +K  + G G   K+ 
Sbjct: 62  GIALEDHFSRRASPGAGLMLGPVVGIVALLADRHGIPLLPISPRELKHRITGTGAASKEA 121

Query: 126 IHMMLKM-LMPESFFKGKDAADALAIA 151
           +   L + L            DA+ +A
Sbjct: 122 VQRALSVWLGNGLRIGSTHEGDAMGLA 148


>gi|284800174|ref|ZP_06390579.1| crossover junction endodeoxyribonuclease RuvC [Neisseria subflava
           NJ9703]
 gi|284795773|gb|EFC51120.1| crossover junction endodeoxyribonuclease RuvC [Neisseria subflava
           NJ9703]
          Length = 96

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 43/76 (56%)

Query: 84  KLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESFFKGKD 143
            LGQAR  AI +  +  +PV EY    +K+AV+G G   K+Q+  M+  ++  S     D
Sbjct: 1   MLGQARGAAIAALVMHDLPVFEYTALQVKQAVVGKGKAAKEQVQHMVVQMLALSGTPQAD 60

Query: 144 AADALAIAVCHAYHAN 159
           AAD LA+A+ HA   +
Sbjct: 61  AADGLAVALTHALRNH 76


>gi|206603016|gb|EDZ39496.1| Probable crossover junction endodeoxyribonuclease (RuvC)
           [Leptospirillum sp. Group II '5-way CG']
          Length = 158

 Score =  108 bits (270), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 65/147 (44%), Gaps = 3/147 (2%)

Query: 8   IGIDPGLRRTGWGIVDVAG-DNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           +G+DPGL  TG+ +++    D L  ++ GT+ +     ++ R+  L++ L  ++  +  +
Sbjct: 2   LGVDPGLAATGFAVLEGPSLDRLRVLAQGTVRTDSTLPVSRRIGLLFDRLDALLSEYPVK 61

Query: 67  EAAVEQVFVNK-DAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
             A+E  F  +    A L LG    I  L      +P+   +P  +K  + G G   K+ 
Sbjct: 62  GIALEDHFSRRASPGAGLMLGPVVGIVALLADRHGVPLLPISPRELKHRITGTGAASKEA 121

Query: 126 IHMMLKM-LMPESFFKGKDAADALAIA 151
           +   L + L            DA+ +A
Sbjct: 122 VQNALSVWLGAGLRIGSTHEGDAMGLA 148


>gi|325474388|gb|EGC77576.1| crossover junction endodeoxyribonuclease ruvC [Treponema denticola
           F0402]
          Length = 98

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 49/88 (55%)

Query: 15  RRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVF 74
             TG+GI+  + +    +  G+I +        RL ++++ ++++I+ +RP+EA +E ++
Sbjct: 2   ANTGYGIISFSNNRFECIEYGSISTEPHLLQGERLLKIFDRVSELIEKYRPKEAGIETLY 61

Query: 75  VNKDAVATLKLGQARAIAILSPALARIP 102
             K+A + + + +AR + +L+ A     
Sbjct: 62  FAKNATSAMSVSEARGVVLLALAQGGGE 89


>gi|251771976|gb|EES52548.1| probable crossover junction endodeoxyribonuclease (RuvC)
           [Leptospirillum ferrodiazotrophum]
          Length = 157

 Score =  103 bits (259), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 41/150 (27%), Positives = 56/150 (37%), Gaps = 9/150 (6%)

Query: 8   IGIDPGLRRTGWGIVDVAG-DNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           +G+DPGL RTGW +V       L F   GTI +     L  R+  +   L + I+     
Sbjct: 1   MGVDPGLARTGWAVVSGESFQRLSFDDGGTIKTAAGGLLHERIGAICGELEEAIRRHGVS 60

Query: 67  EAAVEQVFVNKDAVATLK-LGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
             AVE  F  + A      LG       L     R+      P  +K  V G G   K  
Sbjct: 61  ALAVEDHFSRRSAPGVGHLLGPVIGAVALLAFRNRLTFLLIPPKELKHRVTGTGEAGK-- 118

Query: 126 IHMMLKML----MPESFFKGKDAADALAIA 151
              +++ L     PE         DAL +A
Sbjct: 119 -AALIRSLSFWFGPEIDIGTTHEGDALGLA 147


>gi|307149943|ref|YP_003890986.1| Holliday junction resolvasome endonuclease subunit-like protein
           [Cyanothece sp. PCC 7822]
 gi|306986743|gb|ADN18621.1| Holliday junction resolvasome endonuclease subunit-like protein
           [Cyanothece sp. PCC 7822]
          Length = 392

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 69/160 (43%), Gaps = 15/160 (9%)

Query: 6   RIIGIDPGLRRTGWGIVDVAGDNLCF---VSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
           R +GIDP L    W +++ AG++      +  GTI +  ++  + RL +L + L ++++ 
Sbjct: 231 RTLGIDPALGTLRWAVLEEAGNDYDLPLILDYGTITTTPKRPTSQRLSELEQDLVEILRE 290

Query: 63  WRPEEAAVEQVFVN----KDAVATLKLGQARAIAILSPALAR--IPVSEYAPNTIKKAVI 116
           + P + A+E  ++N    ++        +   +  L     +  +PV  Y+    K  V 
Sbjct: 291 FNPTDVAIEIPYLNTESEQNPKNIQNALEVIGVVDLVCFREKQIVPVRLYSGQW-KSHVC 349

Query: 117 GVGHGDKKQIHMMLKMLMPESFFKGKDAADALAI---AVC 153
                D ++I      L      +  +  DA+ I   A+C
Sbjct: 350 DY-RADNEEITDTFVGLFNLQV-RPTERLDAIGIAYAAIC 387


>gi|126659978|ref|ZP_01731101.1| Holliday juction resolvase; RuvC [Cyanothece sp. CCY0110]
 gi|126618743|gb|EAZ89489.1| Holliday juction resolvase; RuvC [Cyanothece sp. CCY0110]
          Length = 130

 Score = 94.3 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 50/124 (40%), Gaps = 3/124 (2%)

Query: 31  FVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARA 90
            V  G + +     L +RL ++   L ++++ ++    A+EQ F+  +  +  KL Q   
Sbjct: 1   MVDFGLVETDSHDPLPYRLGEIEADLREILQEYQVTNIAIEQPFIQPEFPSMTKLLQVLG 60

Query: 91  IAILSPALAR-IPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESFFKGKDAADALA 149
           +  L       +P   Y      K+ +     +++ +  +++ L            DA+A
Sbjct: 61  VINLVAYRHGCLPTMIYPAT--WKSNLDHPKAEREDLTAIVEELFDLQSILLNQEVDAIA 118

Query: 150 IAVC 153
           +A  
Sbjct: 119 VAYT 122


>gi|228983127|ref|ZP_04143386.1| Crossover junction endodeoxyribonuclease ruvC [Bacillus
           thuringiensis Bt407]
 gi|228777310|gb|EEM25618.1| Crossover junction endodeoxyribonuclease ruvC [Bacillus
           thuringiensis Bt407]
          Length = 163

 Score = 92.3 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 59/149 (39%), Gaps = 12/149 (8%)

Query: 17  TGWGIVD--VAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVF 74
            G+  ++  +  +    + +GT+ +   + L  RL  +YE +      +  +  A E++F
Sbjct: 1   MGYAFIEYDIDTNQYMKLDTGTLKTKSSELLEDRLLTIYEMIKTYNLKYNTDIIACEKLF 60

Query: 75  VN-------KDAV-ATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
            N       ++   + +       +  L      + + ++ P T+KK V G G   K+ +
Sbjct: 61  YNPKQKNDNRNKSASIMTTNMVTGVVFLVAGELGLWIKDFVPGTVKKHVAGYGRATKEDL 120

Query: 127 HMMLKMLMPESFF--KGKDAADALAIAVC 153
              ++    +     K     DA+ IA+ 
Sbjct: 121 QKAIEDFCEQHGIKAKTNHETDAIGIALT 149


>gi|269103019|ref|ZP_06155716.1| crossover junction endodeoxyribonuclease RuvC [Photobacterium
           damselae subsp. damselae CIP 102761]
 gi|268162917|gb|EEZ41413.1| crossover junction endodeoxyribonuclease RuvC [Photobacterium
           damselae subsp. damselae CIP 102761]
          Length = 103

 Score = 91.9 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 40/94 (42%), Positives = 59/94 (62%), Gaps = 1/94 (1%)

Query: 75  VNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLM 134
           + K+A + LKLGQAR  AI++   A +PV+EYA   IK+AV+G+G  DK Q+  M+  ++
Sbjct: 1   MGKNASSALKLGQARGSAIVAAVNADLPVNEYAARLIKQAVVGIGSADKLQVQHMVCSML 60

Query: 135 PESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
                   DAADALA+A+CHA+   +    +A Q
Sbjct: 61  KLEGKPQADAADALAVAICHAHTNRT-LVAMAGQ 93


>gi|307149815|ref|YP_003890858.1| Holliday junction resolvasome endonuclease subunit-like protein
           [Cyanothece sp. PCC 7822]
 gi|306986615|gb|ADN18493.1| Holliday junction resolvasome endonuclease subunit-like protein
           [Cyanothece sp. PCC 7822]
          Length = 391

 Score = 91.6 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 59/143 (41%), Gaps = 10/143 (6%)

Query: 6   RIIGIDPGLRRTGWGIVDVAGDN--LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           R +GIDP L    W +++   D      +  GTI +  ++  + RL +L + L +++K +
Sbjct: 231 RTLGIDPALGTLRWAVLEPDDDYDLPRLLDYGTITTTPKRPTSQRLSELEQDLVEILKEF 290

Query: 64  RPEEAAVEQVFVN----KDAVATLKLGQARAIAILSPAL-ARI-PVSEYAPNTIKKAVIG 117
            P + A+E  ++N    ++        +A  +  L      +I PV  YA    K  +  
Sbjct: 291 APSDVAIEIPYLNTESEQNPKNIQNALEAIGVVDLVCFRERQISPVRLYAGQW-KSHICD 349

Query: 118 VGHGDKKQIHMMLKMLMPESFFK 140
               D ++I   +  L       
Sbjct: 350 Y-RADTEEITDTIAGLFNLQVRP 371


>gi|255103337|ref|ZP_05332314.1| crossover junction endodeoxyribonuclease ruvC [Clostridium
           difficile QCD-63q42]
 gi|255652437|ref|ZP_05399339.1| crossover junction endodeoxyribonuclease ruvC [Clostridium
           difficile QCD-37x79]
          Length = 164

 Score = 88.9 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 67/157 (42%), Gaps = 15/157 (9%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQ--SLAFRLCQLYEGLTDVIKNWR 64
           ++ +D  +  TGW ++     N   +  G IV+   +  S   R+C +   + ++I    
Sbjct: 2   VLALDISMSSTGWAVI---NRNKKVLKYGKIVTKKDKFKSEDERMCYICNTIQEIITTHN 58

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYA-PNTIKKAVIGVGHGDK 123
            +   VE  F ++++   L L +     + +  L  I + EY  P +I+K ++  G   K
Sbjct: 59  IQIVLVEDQFTSRNSKTILSLRKLLGAIMRTVKLNNIEI-EYMYPVSIRKYLMNNGKAKK 117

Query: 124 KQIHMMLK--------MLMPESFFKGKDAADALAIAV 152
           +++   ++         +      K  D  DA+A+ +
Sbjct: 118 EEVAAYVRENIIDIGEYIDRTCKAKTSDIYDAIALGI 154


>gi|307591332|ref|YP_003900131.1| Holliday junction resolvasome endonuclease subunit-like protein
           [Cyanothece sp. PCC 7822]
 gi|306986186|gb|ADN18065.1| Holliday junction resolvasome endonuclease subunit-like protein
           [Cyanothece sp. PCC 7822]
          Length = 388

 Score = 88.9 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 11/145 (7%)

Query: 6   RIIGIDPGLRRTGWGIVDVAGDNLCF---VSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
           R +GIDP L    W +++ A         +  GTI +  +   + RL +L + L  +++ 
Sbjct: 227 RTLGIDPALGTLRWAVLERADSECELPPLLDYGTITTTPKCPTSQRLSELEQDLVVLLRE 286

Query: 63  WRPEEAAVEQVFVNK----DAVATLKLGQARAIAILSPALAR--IPVSEYAPNTIKKAVI 116
           + P E A+E  F+N     +        +   +  L        +P+  Y      K  +
Sbjct: 287 FCPTEVAIEIPFLNTDSEINPKHLQNALEVIGVVDLVCYRECSIVPIRLYRNQ--WKCHV 344

Query: 117 GVGHGDKKQIHMMLKMLMPESFFKG 141
                  + +   +  L        
Sbjct: 345 CDFRASDEDVTDTIAGLFDLQVKPS 369


>gi|327197966|ref|YP_004306283.1| putative Holliday junction resolvase [Lactococcus phage 949]
 gi|306009286|gb|ADM73681.1| putative Holliday junction resolvase [Lactococcus phage 949]
          Length = 226

 Score = 83.5 bits (206), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 38/167 (22%), Positives = 72/167 (43%), Gaps = 18/167 (10%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVS---------CVRQSLAFRLCQLYEG 55
           + I G+DP L+ +G  I+D     +  V  G I +                 +L  +YE 
Sbjct: 1   MYIYGLDPSLKNSGIVIIDKDTKEIVHV--GGIRTDNIKDYKNLPEEMRNPKKLRFIYEE 58

Query: 56  LTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAV 115
           LT + + + P  A +E+ F   +  +T  + +   I  L  +     +  Y   TI++ +
Sbjct: 59  LTKLTRKYPPSVAVIERGFTRFN-KSTQVVFRVHGIFNLVFSEVD-NIY-YPAKTIRETL 115

Query: 116 IGVGHGDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGY 162
              G+  K+++  +L   +  + F   D +DA+A+A   AY   +G 
Sbjct: 116 Y-KGNASKEEVADILSKHLNIT-FNSDDESDAMAVAY--AYLVKNGL 158


>gi|156564173|ref|YP_001429683.1| RuvC [Bacillus phage 0305phi8-36]
 gi|154622870|gb|ABS83750.1| RuvC [Bacillus phage 0305phi8-36]
          Length = 177

 Score = 80.0 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 43/184 (23%), Positives = 74/184 (40%), Gaps = 29/184 (15%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLA---FRLCQLYEGLTDVIK 61
           +RI+GID  L  TG+ I D    +   +    I + ++++      R+  L   L+ ++ 
Sbjct: 1   MRIMGIDASLSTTGYAIYDTEIGDFILIDK--IRTSIKKATPTRSKRIQYLCAELSHIMF 58

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIA---ILSPALARIPVSEYAPNTIKKAVIGV 118
               +    E ++V +   A L LG  R      +       + + E     +KKAV G 
Sbjct: 59  WNYVDVVVTEDIYVAQ-KSAALPLGMVRGAIEQLVYDLEFEGLHIIE--STKMKKAVTGN 115

Query: 119 GHGDKKQIHMMLKMLMPESFF----------------KGKDAADALAIAVCHAYHANSGY 162
           G+ +K   +  LK +  +S                  K +D ADA  + + HAY A+   
Sbjct: 116 GNANKLLTYETLKEIYKDSPLVMEALGKELISDNSAKKNEDMADA--VGLVHAYKADPSQ 173

Query: 163 YKIA 166
             IA
Sbjct: 174 AHIA 177


>gi|297518840|ref|ZP_06937226.1| Holliday junction resolvase [Escherichia coli OP50]
          Length = 89

 Score = 78.1 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 29/53 (54%)

Query: 89  RAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESFFKG 141
           R +AI++     +PV EYA   +K+ V+G+G  +K Q+  M++ L+       
Sbjct: 1   RGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQVQHMVRTLLKLPANPQ 53


>gi|326570548|gb|EGE20588.1| hypothetical protein E9U_04158 [Moraxella catarrhalis BC8]
          Length = 173

 Score = 77.3 bits (190), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 37/170 (21%), Positives = 62/170 (36%), Gaps = 20/170 (11%)

Query: 2   RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLC------QLYEG 55
            + + IIG DP LR  G+ I   A + L F   G I S         L       QLY  
Sbjct: 3   NQPVTIIGFDPSLRNWGYCIATYADNKLTFHQGGVIHSRPNTKQKQNLQDLLSATQLYSQ 62

Query: 56  LTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARI---PVSEYAPNTIK 112
           L  ++   +P+    E    ++ + A +      ++  +      I   P     P  +K
Sbjct: 63  LKQLMTTHKPDYIVAELPVGSQSSRAMVSYATCISLCSVLAFNDGIKTRPFINIPPQEVK 122

Query: 113 KAVIGVGHGDKKQI-HMMLKM-------LMPESFFKGKDAADALAIAVCH 154
           K V G  +  K ++   +++        L      K +   DA+ +A  H
Sbjct: 123 KTV-GKKNATKDEVIQWVVENYPDTKGWLDNLPKSKKEHICDAI-VA-TH 169


>gi|326567435|gb|EGE17550.1| hypothetical protein E9Q_06008 [Moraxella catarrhalis BC1]
 gi|326573192|gb|EGE23161.1| hypothetical protein E9W_07071 [Moraxella catarrhalis CO72]
          Length = 173

 Score = 76.1 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/170 (21%), Positives = 60/170 (35%), Gaps = 20/170 (11%)

Query: 2   RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLC------QLYEG 55
            + + IIG DP LR  G+ I   A + L F   G I S         L       QLY  
Sbjct: 3   NQPVTIIGFDPSLRNWGYCIATYADNKLTFHQGGVIHSRPNTKQKQNLQDLLSATQLYSQ 62

Query: 56  LTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARI---PVSEYAPNTIK 112
           L  ++   +P+    E    ++ + A +      ++  +      I   P     P  +K
Sbjct: 63  LKQLMTTHKPDYIVAELPVGSQSSRAMVSYATCISLCSVLAFNDGIKTRPFINIPPQEVK 122

Query: 113 KAVIGVGHGDKKQIHMMLKM--------LMPESFFKGKDAADALAIAVCH 154
           K V G  +  K ++   +          L      K +   DA+ +A  H
Sbjct: 123 KTV-GKKNATKDEVIQWVAENYPDTKGWLDNLPKSKKEHICDAI-VA-TH 169


>gi|167464754|ref|ZP_02329843.1| crossover junction endodeoxyribonuclease RuvC [Paenibacillus
          larvae subsp. larvae BRL-230010]
          Length = 55

 Score = 76.1 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 29/55 (52%)

Query: 5  IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDV 59
          +RI+GIDPG+   G+G +D     L  V  G+I +        RL Q+YE   ++
Sbjct: 1  MRILGIDPGIAIVGFGFIDKVSSRLVPVQYGSIQTEAYTDPGLRLKQVYEATGEL 55


>gi|226305768|ref|YP_002765728.1| hypothetical protein RER_22810 [Rhodococcus erythropolis PR4]
 gi|226184885|dbj|BAH32989.1| conserved hypothetical protein [Rhodococcus erythropolis PR4]
          Length = 185

 Score = 75.4 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/166 (24%), Positives = 67/166 (40%), Gaps = 18/166 (10%)

Query: 7   IIGIDPGLRRTGWGIVDVAG-----DNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           ++G+DP L   G  I+   G     +    V+ G        +LA R  ++ +    +I+
Sbjct: 4   VVGLDPSLTAAGIAILGSPGTTDTPNVPKLVTVGV-SGSESATLAERSTRIGDQFERIIR 62

Query: 62  NW--RPEEAAVEQV------FVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKK 113
           +         +EQ+      F  K           R    L+    +IPV E    T+KK
Sbjct: 63  SMPSSVRLVVIEQLPFTAPKFAAKYQER--CALYYRVTEFLA--RRKIPVVEVGATTLKK 118

Query: 114 AVIGVGHGDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHAN 159
              G G  DK+++   ++ L P +  +  + ADALA+A   A H  
Sbjct: 119 YATGDGRADKREVVNAMRDLWPHAKVRNDNEADALALATIGAMHLG 164


>gi|242310241|ref|ZP_04809396.1| crossover junction endodeoxyribonuclease ruvC [Helicobacter
           pullorum MIT 98-5489]
 gi|239523538|gb|EEQ63404.1| crossover junction endodeoxyribonuclease ruvC [Helicobacter
           pullorum MIT 98-5489]
          Length = 55

 Score = 74.6 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 109 NTIKKAVIGVGHGDKKQIHMMLKMLMP-ESFFKGKDAADALAIAVCHAYH 157
             +KKA+ G G   K+Q+  M+K L+  +   K  D  DA+AIA+ HA  
Sbjct: 1   MQVKKALTGNGKAQKEQVAFMVKRLLGIKGEIKPLDITDAIAIAITHAQR 50


>gi|119472455|ref|ZP_01614554.1| Holliday junction nuclease [Alteromonadales bacterium TW-7]
 gi|119444892|gb|EAW26191.1| Holliday junction nuclease [Alteromonadales bacterium TW-7]
          Length = 85

 Score = 73.1 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/75 (41%), Positives = 45/75 (60%), Gaps = 1/75 (1%)

Query: 94  LSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESFFKGKDAADALAIAVC 153
           +  A+A +PV EY+   IK+AV+G G  DK Q+  M+K ++        DAADALAIA+C
Sbjct: 1   MGAAMADLPVFEYSARQIKQAVVGNGGADKSQVQHMVKNILKLPGTPQADAADALAIAIC 60

Query: 154 HAYHANSGYYKIASQ 168
           HA+   +   K+A  
Sbjct: 61  HAHSEQN-LIKLAGS 74


>gi|315644187|ref|ZP_07897357.1| hypothetical protein PVOR_01530 [Paenibacillus vortex V453]
 gi|315280562|gb|EFU43851.1| hypothetical protein PVOR_01530 [Paenibacillus vortex V453]
          Length = 181

 Score = 69.2 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 63/181 (34%), Gaps = 37/181 (20%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R +  D  L R G+ IV+ A D++  ++ G +    +     RL ++ + L  +I+ + 
Sbjct: 1   MRTLFCDQSLLRFGFSIVEKASDHVQIIAYGLLQLDAKLHYIERLGEIEKWLIRMIREYG 60

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
            E+   E++   ++     KL   ++          I  +   P  +             
Sbjct: 61  IEQIVCEEIQFQRNVQTFRKLAVLQSAIEAVCYHNGISYA--KPLQV------------- 105

Query: 125 QIHMM--LKMLMPES----------------FFKGKDA--ADALAIAV--CHAYHANSGY 162
            +     ++ ++                        D   ADAL +A+  C  Y+ N   
Sbjct: 106 HVWRTKGVRRILQLPDGSKQTLFQYLNHYLNAPPAFDMNQADALGMAIYWCDKYYENLPL 165

Query: 163 Y 163
           +
Sbjct: 166 H 166


>gi|168069733|ref|XP_001786559.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162661008|gb|EDQ48630.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 225

 Score = 68.8 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 63/159 (39%), Gaps = 20/159 (12%)

Query: 6   RIIGID----PGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           R++G+D    PG        ++V       +++ ++ +    + A R   +   ++  I 
Sbjct: 55  RVLGLDLSSSPGAAA-----IEVRNRTPYLIAASSVATTNDDTDAVRNVAVESFISQFIY 109

Query: 62  NWRPEEAAVEQVFV-NKDAVATLKLGQARAIAILSPALARIPVSE-----YAPNTIKKAV 115
             RP +  V + F   ++  AT  +  + A A  +        +E      +P  +KKAV
Sbjct: 110 ENRPFDIVVREDFTTGRNKRATQLVFGSWAAADRALLAFGYR-AEDLDPPLSPTYVKKAV 168

Query: 116 IGVGHGDKKQIHMMLKMLMPESFFKG----KDAADALAI 150
            G G  +K ++   ++  +            D +DA A+
Sbjct: 169 TGDGKAEKSEVAKAVRKWLRLPDDYPFRAGYDDSDACAV 207


>gi|296169771|ref|ZP_06851386.1| possible gp67 [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295895565|gb|EFG75264.1| possible gp67 [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 205

 Score = 68.8 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 39/170 (22%), Positives = 63/170 (37%), Gaps = 17/170 (10%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDN--LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK- 61
           + + GIDP L  TG  ++   G    L  +  GT+        + R+      +  V+  
Sbjct: 1   MIVAGIDPSLTNTGIAVLH-NGQPMLLRSIGHGTLSVRSYAHRSDRIVAECRAVMAVLAD 59

Query: 62  -----------NWRPEEAAVEQV-FVNKDAVATLKLGQARAIAILSPALARIPVSEYAPN 109
                        R + A +E   +   +A      G    +   +    RIP+   AP 
Sbjct: 60  ECDERNTLRAARSRIDLAVIEGPAYGACNASTHDGSGLWWGLY-STLRARRIPIVVVAPT 118

Query: 110 TIKKAVIGVGHGDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHAN 159
           T  K   G G+ DK+ I   ++   P +     D ADAL +A   A+H  
Sbjct: 119 TRAKWATGKGNADKRAILTTVRSWWPNTHIANHDQADALVLAAIGAFHHG 168


>gi|194100519|ref|YP_002003844.1| gp5 [Mycobacterium phage Nigel]
 gi|192758235|gb|ACF05008.1| gp5 [Mycobacterium phage Nigel]
          Length = 193

 Score = 67.7 bits (165), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 28/163 (17%), Positives = 60/163 (36%), Gaps = 19/163 (11%)

Query: 5   IRIIGIDPGLRRTGWGIVD------------------VAGDNLCFVSSGTIVSCVRQSLA 46
           +RI+GID  L  TG   +D                     D     + G      ++++ 
Sbjct: 1   MRILGIDTSLTGTGLARIDLATWPPSNPPRQDDETVVFTADTATVSAPGPTKDKSKRAMC 60

Query: 47  FRLCQLYEGLTDVIKN-WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSE 105
            R+  L + +    ++  +P+   +E +       +   L       I       +P++ 
Sbjct: 61  RRVNALIDQIEWCFQDGEKPDAVGMEALAYGAKGASAWVLPWVFGRVIELCEKYDVPLTI 120

Query: 106 YAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESFFKGKDAADAL 148
              +   K   G G+ DK+ + + +   +P++  +  + ADAL
Sbjct: 121 VGTSQRAKFATGKGNADKETVLLAIAKALPQADPRNNNEADAL 163


>gi|109521767|ref|YP_655689.1| gp9 [Mycobacterium phage Qyrzula]
 gi|91980711|gb|ABE67429.1| gp9 [Mycobacterium phage Qyrzula]
          Length = 230

 Score = 66.5 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 67/175 (38%), Gaps = 15/175 (8%)

Query: 6   RIIGIDPGLRRTGWG--IV-DVAGD---------NLCFVSSGTIVSCVRQSL---AFRLC 50
           RI+GID  L  TG    ++ DV             +   + G        +    + R+ 
Sbjct: 42  RILGIDTSLTGTGLARAVLPDVQRGVDMPREWPAQVDLATVGASKPKKGDTWLARSRRVH 101

Query: 51  QLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNT 110
           ++ +G+   + +   +   +E++       A + L       +    L  IP+     + 
Sbjct: 102 EVLDGIAGALDDGHYDAVGLEELAYGAKGDAVVVLHWLWGEVVNLVRLRDIPLYLVNVSG 161

Query: 111 IKKAVIGVGHGDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
           +KK   G G+  K ++ + +    P+   K  + +DALA+ +  A H    +  +
Sbjct: 162 VKKFATGNGNAKKDEVMLAMANRFPQYTIKDNNQSDALAVCMMTARHCGVPFETM 216


>gi|255928226|gb|ACU41843.1| gp6 [Mycobacterium phage Puhltonio]
          Length = 184

 Score = 66.1 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 60/159 (37%), Gaps = 11/159 (6%)

Query: 7   IIGIDPGLRRTGWGIV------DVAGDNLCFVSSGTIVSCVRQS---LAFRLCQLYEGLT 57
           ++GID  LR TG  +V      ++   +   V+ G   +   +S   +A R+  L + + 
Sbjct: 4   VLGIDTSLRATGMCLVSLPPSVELGSWHGQCVTVGAPAATPDKSKRAMARRVKALVDQIQ 63

Query: 58  DVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIG 117
            V    RP+   +E +           L       I       + +     + +KK   G
Sbjct: 64  WVFAEDRPDLVVMETLAFAAKGEGVWVLPWIFGKVIELCEGFDVELLCAGTSQVKKYATG 123

Query: 118 VGHGDKKQIHMMLKMLMPESFFKGKDAADA--LAIAVCH 154
            G+ DK  + + +    P+      + ADA  LA   CH
Sbjct: 124 KGNADKDTVMLTVAKRWPDLAPANNNEADAACLAAIGCH 162


>gi|38638409|ref|NP_943784.1| gp6 [Mycobacterium phage PG1]
 gi|109391852|ref|YP_655102.1| gp6 [Mycobacterium phage Orion]
 gi|206600296|ref|YP_002241316.1| gp6 [Mycobacterium phage Chah]
 gi|33334024|gb|AAQ12083.1| gp6 [Mycobacterium phage PG1]
 gi|88910394|gb|ABD58322.1| gp6 [Mycobacterium phage Orion]
 gi|206287384|gb|ACI12726.1| gp6 [Mycobacterium phage Chah]
 gi|255927530|gb|ACU41152.1| gp6 [Mycobacterium phage Colbert]
 gi|255928468|gb|ACU42083.1| gp6 [Mycobacterium phage UncleHowie]
 gi|282721386|gb|ADA83834.1| gp6 [Mycobacterium phage Fang]
 gi|282721489|gb|ADA83936.1| gp6 [Mycobacterium phage Scoot17C]
          Length = 184

 Score = 65.0 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 61/159 (38%), Gaps = 11/159 (6%)

Query: 7   IIGIDPGLRRTGWGIV------DVAGDNLCFVSSGTIVSCVRQS---LAFRLCQLYEGLT 57
           ++GID  LR TG  +V      ++   +   V+ G   +   +S   +A R+  L + + 
Sbjct: 4   VLGIDTSLRATGMCLVSLPPSVELGSWHGQCVTVGAPAATPDKSKRAMARRVKALVDQIR 63

Query: 58  DVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIG 117
            V  + RP+   +E +           L       I       + +     + +KK   G
Sbjct: 64  WVFDDDRPDLVVMETLAFAAKGEGVWVLPWIFGKVIELCEEFDVELLCAGTSQVKKYATG 123

Query: 118 VGHGDKKQIHMMLKMLMPESFFKGKDAADA--LAIAVCH 154
            G+ DK  + + +    PE      + AD+  LA   CH
Sbjct: 124 KGNADKDTVMLTVAKRWPELAPANNNEADSACLAAIGCH 162


>gi|169838587|ref|ZP_02871775.1| hypothetical protein cdivTM_16026 [candidate division TM7
          single-cell isolate TM7a]
          Length = 42

 Score = 64.2 bits (156), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 5  IRIIGIDPGLRRTGWGIVDVAG-DNLCFVSSGTIVSCVRQSL 45
          +RI+GIDPG    G+G++D         VS+G + +     L
Sbjct: 1  MRILGIDPGTGILGFGVIDCVNYGKYKMVSAGVVRTPPHTPL 42


>gi|288817848|ref|YP_003432195.1| hypothetical protein HTH_0531 [Hydrogenobacter thermophilus TK-6]
 gi|288787247|dbj|BAI68994.1| hypothetical protein HTH_0531 [Hydrogenobacter thermophilus TK-6]
 gi|308751445|gb|ADO44928.1| hypothetical protein Hydth_0528 [Hydrogenobacter thermophilus TK-6]
          Length = 154

 Score = 64.2 bits (156), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 40/101 (39%), Gaps = 15/101 (14%)

Query: 6   RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           RI+ IDPG    G+ +    G+    +  GT+    ++    RL ++Y  + ++I+   P
Sbjct: 3   RIMTIDPGYSALGYAV----GEENKLIEYGTVYFKGKEET--RLTEIYLKIKELIQRHNP 56

Query: 66  EEAAVEQVFVNKD-----AVATLKLGQARAIAILSPALARI 101
           +   +E   V KD         + +     I        +I
Sbjct: 57  DTVLIEDYRVYKDGYKGKHKTAIVV----GIICAIAYEHKI 93


>gi|307150953|ref|YP_003886337.1| Holliday junction resolvasome endonuclease subunit-like protein
           [Cyanothece sp. PCC 7822]
 gi|306981181|gb|ADN13062.1| Holliday junction resolvasome endonuclease subunit-like protein
           [Cyanothece sp. PCC 7822]
          Length = 170

 Score = 63.8 bits (155), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 59/154 (38%), Gaps = 10/154 (6%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           IIG+DPGL      ++D    N   +    I     ++L  +   +    T    N+  E
Sbjct: 6   IIGVDPGLNYLAVSLLD---SNKKLMDFNCIEQEQEKNLENKYNNINRKFTKWFSNFNKE 62

Query: 67  EAAV--EQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK- 123
           +  +  E          T K+ +A  I I +     + + + APN +K  + G     K 
Sbjct: 63  KTIIILEFPVFMIKTENTKKVDKATEIIINAANKFDLKIHKIAPNHVKFLITGNSRISKV 122

Query: 124 ---KQIHMMLKMLMP-ESFFKGKDAADALAIAVC 153
              +Q+  M+  +    S +      D++AI + 
Sbjct: 123 GLFEQVKGMVSNIPSTLSAYTNNHITDSIAIGLT 156


>gi|322384973|ref|ZP_08058626.1| hypothetical protein PL1_2911 [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321150182|gb|EFX43692.1| hypothetical protein PL1_2911 [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 196

 Score = 61.9 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 58/126 (46%), Gaps = 17/126 (13%)

Query: 4   SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           S+R +GIDP   +TG+  +D  G+ +        ++ + +    R+  L   + +++ + 
Sbjct: 11  SMRFVGIDP-STKTGFVALDQFGNVIKAKE----LTGINRPDPIRMITL---VDEIMDHI 62

Query: 64  RPEEAAVEQVFVNKDAVATLK--LGQARAI---AILSPALARIPVSEYAPNTIKKAVIGV 118
           +P +    QVF+   A A     +GQ   I     ++    ++  +E  P+ +KK   G 
Sbjct: 63  QPGD----QVFIEGFAHAAKGNYVGQMFGIGWGIRMALTRRKVQYTEVTPSQLKKFASGK 118

Query: 119 GHGDKK 124
           G+  K+
Sbjct: 119 GNAKKE 124


>gi|307944537|ref|ZP_07659877.1| crossover junction endodeoxyribonuclease RuvC [Roseibium sp.
           TrichSKD4]
 gi|307772286|gb|EFO31507.1| crossover junction endodeoxyribonuclease RuvC [Roseibium sp.
           TrichSKD4]
          Length = 97

 Score = 61.5 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 36/61 (59%), Positives = 47/61 (77%)

Query: 98  LARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYH 157
           LA + V+EYAPN +KK V+G GH +K QI  M+K+LMP++ F   DAADALAIA+CHA+H
Sbjct: 24  LAGLSVAEYAPNLVKKTVVGTGHAEKDQIRAMVKVLMPKAVFNSDDAADALAIAICHAHH 83

Query: 158 A 158
            
Sbjct: 84  R 84


>gi|228904800|ref|ZP_04068854.1| Crossover junction endodeoxyribonuclease ruvC [Bacillus
           thuringiensis IBL 4222]
 gi|228854814|gb|EEM99418.1| Crossover junction endodeoxyribonuclease ruvC [Bacillus
           thuringiensis IBL 4222]
          Length = 143

 Score = 60.4 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 20/128 (15%), Positives = 41/128 (32%), Gaps = 3/128 (2%)

Query: 28  NLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQ 87
               + +G I    +     ++    E +  + + +   +   E  F   +     KL +
Sbjct: 4   KHDIIEAGKIDIPSKGDEGDKIIYQIERIEALFEKYDITKILCEDQFSKLNIDTLKKLTR 63

Query: 88  ARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLM---PESFFKGKDA 144
                +      ++ +    P + +K   G G   K+     +  L       F K  D 
Sbjct: 64  VSGTILYLAKKHKLEIELIYPTSWRKIFHGSGKAKKEDTFHKVVALYEFENLEFKKDNDL 123

Query: 145 ADALAIAV 152
            DA+ IA 
Sbjct: 124 TDAIGIAW 131


>gi|167462366|ref|ZP_02327455.1| crossover junction endodeoxyribonuclease RuvC [Paenibacillus larvae
           subsp. larvae BRL-230010]
          Length = 102

 Score = 60.4 bits (146), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 37/71 (52%), Gaps = 6/71 (8%)

Query: 95  SPALARIPVSEY-APNTIKKAVIGVGHGDKKQIHMMLKMLMPESF---FKGKDAADALAI 150
           +       V+++ +P+T+K+ V G G  +K+ +   ++ L+       F+  D +DA A+
Sbjct: 30  ALERFGQRVTDHLSPSTVKRLVTGSGKAEKEDVAESVRKLLGLPPDYEFESDDESDACAV 89

Query: 151 AVCHAYHANSG 161
           A+  A+   +G
Sbjct: 90  AL--AWLIQNG 98


>gi|188581957|ref|YP_001925402.1| hypothetical protein Mpop_2712 [Methylobacterium populi BJ001]
 gi|179345455|gb|ACB80867.1| hypothetical protein Mpop_2712 [Methylobacterium populi BJ001]
          Length = 185

 Score = 60.0 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 52/128 (40%), Gaps = 13/128 (10%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R++GIDPG    G+    + G       SGTI      S   +   L   + ++I  + 
Sbjct: 1   MRVLGIDPGGAS-GYAY-GLPGQKPK---SGTIRLDSGFSNGRKFATLEGRVRNIIGVYE 55

Query: 65  PEEAAVEQVFVNKDAV----ATLKLGQA-RAIAILSPALARI---PVSEYAPNTIKKAVI 116
            +   +E  ++  D        ++LG   +A  +++     I    +S   PN  +K  I
Sbjct: 56  IDAVFIEAPYIQTDPRKFDIQVVRLGYGYQAAILMACEKEGIGPERISLVEPNLWRKFAI 115

Query: 117 GVGHGDKK 124
           G G+  K 
Sbjct: 116 GRGNAPKD 123


>gi|317130960|ref|YP_004097242.1| hypothetical protein Bcell_4284 [Bacillus cellulosilyticus DSM
           2522]
 gi|315475908|gb|ADU32511.1| hypothetical protein Bcell_4284 [Bacillus cellulosilyticus DSM
           2522]
          Length = 170

 Score = 60.0 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/162 (16%), Positives = 62/162 (38%), Gaps = 15/162 (9%)

Query: 6   RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           R++ +D  +   G+ I ++  +    +  GTI    +     R+  L   L +++K++  
Sbjct: 3   RLLSLDQSITSCGYSIFEIHNNQSELIDYGTIKLNTKLDYFERIICLENILNEMVKDYNI 62

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSP----ALARIPVSEYAPNTIK------KAV 115
           + A VE +   K     L   +  +  +           I   E     +       + V
Sbjct: 63  KLAIVEDI--QKHRGTGLTTYKKLSSLLFFLQYFFYYRNI---ECQVVHVNTWRNGYRNV 117

Query: 116 IGVGHGDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYH 157
            G+   +K  ++  +  ++ E        +D++A+ + H +H
Sbjct: 118 FGLPRINKDIVYEHIFNILGEPSDFDNHQSDSIAMGLFHCHH 159


>gi|163784663|ref|ZP_02179489.1| hypothetical protein HG1285_11048 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880062|gb|EDP73740.1| hypothetical protein HG1285_11048 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 179

 Score = 60.0 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 5/76 (6%)

Query: 5  IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLA-FRLCQLYEGLTDVIKNW 63
          + II IDPG+ +TG+ +    G N   +  GTI +  +      R+ ++ E + D+I   
Sbjct: 1  MSIIAIDPGIEKTGYAV----GANNKVLEIGTIKTSKKDGTDFDRVSKIKEAVRDLILKH 56

Query: 64 RPEEAAVEQVFVNKDA 79
          +     +E+  V  + 
Sbjct: 57 QVSLMLIEEYHVYGNP 72


>gi|322382742|ref|ZP_08056588.1| hypothetical protein PL1_2744 [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321153286|gb|EFX45728.1| hypothetical protein PL1_2744 [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 196

 Score = 59.6 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 53/125 (42%), Gaps = 17/125 (13%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R +GIDP   +TG+  +D  G           ++ + +S + R+  L   + +++ + +
Sbjct: 12  MRFVGIDP-STKTGFVALDQLGKVSKAKE----LTGINKSDSIRIITL---VDEIMDHIQ 63

Query: 65  P-EEAAVEQVFVN----KDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVG 119
           P +   +E  F +            +G        +    ++P +E  P+ +KK   G G
Sbjct: 64  PGDRVCIEG-FAHAAKGNYVSQMFGIGWG---IRTALTRRKVPYTEVTPSQLKKFATGKG 119

Query: 120 HGDKK 124
           +  K+
Sbjct: 120 NAKKE 124


>gi|167461747|ref|ZP_02326836.1| hypothetical protein Plarl_04195 [Paenibacillus larvae subsp.
           larvae BRL-230010]
          Length = 185

 Score = 59.2 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 53/125 (42%), Gaps = 17/125 (13%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R +GIDP   +TG+  +D  G           ++ + +S + R+  L   + +++ + +
Sbjct: 1   MRFVGIDP-STKTGFVALDQLGKVSKAKE----LTGINKSDSIRIITL---VDEIMDHIQ 52

Query: 65  P-EEAAVEQVFVN----KDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVG 119
           P +   +E  F +            +G        +    ++P +E  P+ +KK   G G
Sbjct: 53  PGDRVCIEG-FAHAAKGNYVSQMFGIGWG---IRTALTRRKVPYTEVTPSQLKKFATGKG 108

Query: 120 HGDKK 124
           +  K+
Sbjct: 109 NAKKE 113


>gi|317508631|ref|ZP_07966287.1| hypothetical protein HMPREF9336_02659 [Segniliparus rugosus ATCC
           BAA-974]
 gi|316253034|gb|EFV12448.1| hypothetical protein HMPREF9336_02659 [Segniliparus rugosus ATCC
           BAA-974]
          Length = 194

 Score = 59.2 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 59/161 (36%), Gaps = 26/161 (16%)

Query: 9   GIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLC-----------QLYEGLT 57
           GID  L  TG  ++        FV      +   ++   RL            ++   + 
Sbjct: 3   GIDLSLASTGVALLGADPTQPPFV-----TTVGSKACPDRLDAHLARHRSLVDRIATAVF 57

Query: 58  DVIKNWRPEEAAV---EQVFVNKDAVATLKLGQARAIA--ILSPALA--RIPVSEYAPNT 110
           D  K+  P+  A+   E       A  +      RA     L+       +P++   P+ 
Sbjct: 58  DRCKSVAPDGVALVVLEGPSYASKADTS---SWRRAHIWWELAGRFHDLGVPIAVCPPSV 114

Query: 111 IKKAVIGVGHGDKKQIHMMLKMLMPESFFKGKDAADALAIA 151
           +KK V G G   K ++ + ++   PE      D ADA+ +A
Sbjct: 115 LKKFVTGKGTAKKLEVALAVQRAWPELAISLDDEADAIGLA 155


>gi|218782409|ref|YP_002433727.1| hypothetical protein Dalk_4581 [Desulfatibacillum alkenivorans
           AK-01]
 gi|218763793|gb|ACL06259.1| hypothetical protein Dalk_4581 [Desulfatibacillum alkenivorans
           AK-01]
          Length = 189

 Score = 59.2 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 47/144 (32%), Gaps = 14/144 (9%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCV--------RQSLAFRLCQLYEGLTD 58
           I+ +D GL  TG+ + +           G   +              A R   L   +  
Sbjct: 2   ILALDVGLSNTGYCVFENGKPQ----EWGVCTTSPVKKKTVRVADDRADRSASLARQIRA 57

Query: 59  VIKNWRPEEAAVEQV-FVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIG 117
           V++         E      + A A   + QA  I   + AL  IP     P  +KKA  G
Sbjct: 58  VVEKHGVTGIVGELPSGGAQSAKAMGDMTQAVGIVAATAALLGIPAEWCTPTDVKKAATG 117

Query: 118 VGHGDKKQIH-MMLKMLMPESFFK 140
                K++I   M K    E   K
Sbjct: 118 KASASKEEIADAMAKKYGLEKVVK 141


>gi|291444687|ref|ZP_06584077.1| Pas46 [Streptomyces roseosporus NRRL 15998]
 gi|291347634|gb|EFE74538.1| Pas46 [Streptomyces roseosporus NRRL 15998]
          Length = 219

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 50/123 (40%), Gaps = 11/123 (8%)

Query: 4   SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
            +RIIG+D  L  TG  +          V+   I +  +     RL  + + +   +   
Sbjct: 40  ELRIIGLDLSLTSTGVCL-------PTGVTY-RIKTRQKDG-DRRLLVIRDRIRAALAEH 90

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RP  A VE + V+  A+A  + G    +       A +P +   P T+K      G+ DK
Sbjct: 91  RPHLAVVEDLPVH--AMAAGRTGHVHGVVKAELLDADVPYALVVPATLKSYACDHGNADK 148

Query: 124 KQI 126
            ++
Sbjct: 149 ARM 151


>gi|239941245|ref|ZP_04693182.1| hypothetical protein SrosN15_09646 [Streptomyces roseosporus NRRL
           15998]
 gi|239987701|ref|ZP_04708365.1| hypothetical protein SrosN1_10383 [Streptomyces roseosporus NRRL
           11379]
          Length = 205

 Score = 58.4 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 50/123 (40%), Gaps = 11/123 (8%)

Query: 4   SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
            +RIIG+D  L  TG  +          V+   I +  +     RL  + + +   +   
Sbjct: 26  ELRIIGLDLSLTSTGVCL-------PTGVTY-RIKTRQKDG-DRRLLVIRDRIRAALAEH 76

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RP  A VE + V+  A+A  + G    +       A +P +   P T+K      G+ DK
Sbjct: 77  RPHLAVVEDLPVH--AMAAGRTGHVHGVVKAELLDADVPYALVVPATLKSYACDHGNADK 134

Query: 124 KQI 126
            ++
Sbjct: 135 ARM 137


>gi|29566202|ref|NP_817770.1| gp9 [Mycobacterium phage Rosebush]
 gi|29424927|gb|AAN01851.1| gp9 [Mycobacterium phage Rosebush]
          Length = 162

 Score = 58.4 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 50/120 (41%)

Query: 46  AFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSE 105
           + R+ ++ +G+   + +   +   +E++       A + L       +    L  IP+  
Sbjct: 29  SRRVHEVLDGIAGALDDGHYDAVGLEELAYGAKGDAVVVLHWLWGEVVNLVRLRDIPLYL 88

Query: 106 YAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
              + +KK   G G+  K ++ + +    P+   K  + +DALA+ +  A H    +  +
Sbjct: 89  VNVSGVKKFATGNGNAKKDEVMLAMANRFPQYTIKDNNQSDALAVCMMTARHCGVPFETM 148


>gi|167461708|ref|ZP_02326797.1| hypothetical protein Plarl_04000 [Paenibacillus larvae subsp.
           larvae BRL-230010]
 gi|167461721|ref|ZP_02326810.1| hypothetical protein Plarl_04065 [Paenibacillus larvae subsp.
           larvae BRL-230010]
 gi|167461732|ref|ZP_02326821.1| hypothetical protein Plarl_04120 [Paenibacillus larvae subsp.
           larvae BRL-230010]
          Length = 185

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 56/125 (44%), Gaps = 17/125 (13%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R +GIDP   +TG+  +D  G           ++ + +S + R+  L   + +++ + +
Sbjct: 1   MRFVGIDP-STKTGFVALDQLGKVSKAKE----LTGINKSDSIRIITL---VDEIMDHIQ 52

Query: 65  PEEAAVEQVFVNKDAVATLK--LGQARAI---AILSPALARIPVSEYAPNTIKKAVIGVG 119
           P +    +VF+   A A     + Q   I      +    ++P +E  P+ +KK   G G
Sbjct: 53  PGD----RVFIEGFAHAAKGNYVSQMFGIGWGIRTALTRRKVPYTEVTPSQLKKFATGKG 108

Query: 120 HGDKK 124
           +  K+
Sbjct: 109 NAKKE 113


>gi|325474387|gb|EGC77575.1| crossover junction endodeoxyribonuclease ruvC [Treponema denticola
           F0402]
          Length = 68

 Score = 56.5 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/41 (39%), Positives = 25/41 (60%)

Query: 103 VSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESFFKGKD 143
           V EYAPN+IKKAV G+   +K+Q+   +K+++        D
Sbjct: 3   VGEYAPNSIKKAVTGIAQAEKRQVQEAVKLILGLKEIPRPD 43


>gi|222435678|ref|YP_002564106.1| gp8 [Mycobacterium phage Phlyer]
 gi|222088231|gb|ACM42172.1| gp8 [Mycobacterium phage Phlyer]
          Length = 205

 Score = 56.5 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 51/154 (33%), Gaps = 11/154 (7%)

Query: 6   RIIGIDPGLRRTGWGIVDV--AGDNLCFVSSGTIVSC----VRQSLAFRLCQLYEGLTDV 59
           R++ +DP L  TG   VD+         +               +++ R+ ++ + +   
Sbjct: 27  RVLSVDPSLTSTGLCRVDLLHEPVRAEILLHAVKSKPTADKSYAAMSRRIEKIADTVRAA 86

Query: 60  IKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPA-LARIPVSEYAPNTIKKAVIGV 118
           +     +   +E          T            +      IPV    P+   K   G 
Sbjct: 87  MD--GCDLIVIEGPSFGSKGQHTHSRDWLWGKIFDAARVNWGIPVLVVTPSQRMKYATGK 144

Query: 119 GHGDKKQI-HMMLKMLMPESFFKGKDAADALAIA 151
           G+  K  +    +K   P+    G D ADAL +A
Sbjct: 145 GNAQKDAVLAAAIKR-WPDVEIDGNDQADALILA 177


>gi|109521848|ref|YP_655285.1| gp8 [Mycobacterium phage Pipefish]
 gi|88910579|gb|ABD58505.1| gp8 [Mycobacterium phage Pipefish]
          Length = 216

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 53/169 (31%), Gaps = 22/169 (13%)

Query: 2   RKSIRIIGIDPGLRRTGWGIVDVAGD-------------NLCFVSSGTIVSC----VRQS 44
           ++  R++ +DP L  TG   VD+                    +               +
Sbjct: 23  QRMTRVLSVDPSLTSTGLCRVDLIPRPTSSEPRGDNEPVRAEILLHAVKSKPTADKSYLA 82

Query: 45  LAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPA-LARIPV 103
           ++ R+ ++ + +   +     +   +E          T            +      IPV
Sbjct: 83  MSRRIEKIADTVRAAMD--GCDLIVIEGPSFGSKGQHTHSRDWLWGKIFDAARVNWGIPV 140

Query: 104 SEYAPNTIKKAVIGVGHGDKKQI-HMMLKMLMPESFFKGKDAADALAIA 151
               P+   K   G G+  K  +    +K   P+    G D ADAL +A
Sbjct: 141 LVVTPSQRMKYATGKGNAQKDAVLAAAIKR-WPDVEIDGNDQADALILA 188


>gi|257453062|ref|ZP_05618361.1| hypothetical protein F3_08386 [Fusobacterium sp. 3_1_5R]
 gi|317059599|ref|ZP_07924084.1| predicted protein [Fusobacterium sp. 3_1_5R]
 gi|313685275|gb|EFS22110.1| predicted protein [Fusobacterium sp. 3_1_5R]
          Length = 251

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 49/143 (34%), Gaps = 7/143 (4%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           ++ ID     TG             V   TI     +    R  ++ E L  ++K  + +
Sbjct: 104 VLAIDLSTTSTGIA----YSQKGEIVRWKTIK-AEDKDFRKRGAKIIEELVKILKKGKID 158

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
              +E V++  ++     L + R +         I +    P   K  + GV    ++Q 
Sbjct: 159 FVVLEDVYLGLNSSVLTMLSEVRGMLTYPLVKLNIDILIVPPVLWKHRIEGVPFHREEQK 218

Query: 127 HMMLKMLMP--ESFFKGKDAADA 147
             M+K  +          D ADA
Sbjct: 219 EFMMKKFLEYTGENPDSDDVADA 241


>gi|237732990|ref|ZP_04563471.1| predicted protein [Mollicutes bacterium D7]
 gi|229383894|gb|EEO33985.1| predicted protein [Coprobacillus sp. D7]
          Length = 172

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 45/108 (41%), Gaps = 4/108 (3%)

Query: 47  FRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDA-VATLKLGQARAIAILSPALARIPVSE 105
            ++  +   + D IK + P+    E +F+ K+   ++  L +   + I        P+  
Sbjct: 46  EKMRYISTYINDFIKKYPPKSFTAEGIFIKKEFLASSETLMKVHGMVIEKFINY--PIKY 103

Query: 106 YAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESFFKGKDAADALAIAVC 153
             P  IKK + G G+  K+ +   +   +        D ADALA+ + 
Sbjct: 104 IPPANIKKNITGKGNASKELVRQNICKKLNIQGI-NYDEADALALMLT 150


>gi|237711872|ref|ZP_04542353.1| predicted protein [Bacteroides sp. 9_1_42FAA]
 gi|317474986|ref|ZP_07934255.1| hypothetical protein HMPREF1016_01234 [Bacteroides eggerthii
           1_2_48FAA]
 gi|229454567|gb|EEO60288.1| predicted protein [Bacteroides sp. 9_1_42FAA]
 gi|316908889|gb|EFV30574.1| hypothetical protein HMPREF1016_01234 [Bacteroides eggerthii
           1_2_48FAA]
          Length = 161

 Score = 54.6 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 43/113 (38%), Gaps = 11/113 (9%)

Query: 56  LTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEY-APNTIKKA 114
           L  +++ +       E V VN+      +L + R I +       IP  E+  P  +KK 
Sbjct: 57  LLSLLRRYGIRRVVAEDVSVNRHFYDMRRLSELRGILLEVCDELDIPEPEFVNPAVLKKW 116

Query: 115 VIGVGHGDKKQIHMMLKMLMPESFFKGKD--AADALAIAVCHAYHANSGYYKI 165
             G GH  K Q   M+            D  AADA     CH ++     +++
Sbjct: 117 ATGDGHATKTQ---MVAACKDRYGIVPVDDNAADA-----CHLFYYYIRRHRL 161


>gi|138896480|ref|YP_001126933.1| hypothetical protein GTNG_2843 [Geobacillus thermodenitrificans
           NG80-2]
 gi|134267993|gb|ABO68188.1| Putative phage protein [Geobacillus thermodenitrificans NG80-2]
          Length = 186

 Score = 54.6 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 51/125 (40%), Gaps = 12/125 (9%)

Query: 3   KSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
             +R +GIDP L  TG  I+   G     + +  I      S   R+  L + +T  +  
Sbjct: 22  APMRFVGIDPSL-HTGLVILSGQG---KIIEAKEI--SKDGSDPARMNALIQEVTYYV-- 73

Query: 63  WRPEE-AAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
            +P++  A+E       +     LG       +      +P  + AP+ +KK     G+ 
Sbjct: 74  -QPDDFVAIEG--FGYASQRGFLLGGIGWGMRMELYRRGVPYIDVAPSLVKKFAGAKGNA 130

Query: 122 DKKQI 126
           +K+++
Sbjct: 131 NKEKV 135


>gi|162454552|ref|YP_001616919.1| crossover junction endodeoxyribonuclease ruvC [Sorangium
          cellulosum 'So ce 56']
 gi|161165134|emb|CAN96439.1| Crossover junction endodeoxyribonuclease ruvC [Sorangium
          cellulosum 'So ce 56']
          Length = 182

 Score = 54.6 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 2/67 (2%)

Query: 7  IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
          ++G DPG  R GW  +DV       V SG +   +       L  L      ++  +RP 
Sbjct: 5  VLGFDPGAARVGWAALDVDAAGARHVGSGVLPVDLAGDPG--LEALRTAAGALLSRYRPA 62

Query: 67 EAAVEQV 73
            AVE+V
Sbjct: 63 LVAVERV 69


>gi|169842557|ref|ZP_02875662.1| hypothetical protein cdivTM_35644 [candidate division TM7
           single-cell isolate TM7a]
          Length = 64

 Score = 54.6 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 100 RIPVSEYAPNTIKKAVIGVGHGDKKQIH 127
            I ++EY P  IK  + G G  DK+Q+ 
Sbjct: 2   GIKIAEYTPLQIKNTLTGYGKADKRQVQ 29


>gi|218508891|ref|ZP_03506769.1| Holliday junction resolvase [Rhizobium etli Brasil 5]
          Length = 64

 Score = 54.2 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 42/61 (68%), Positives = 50/61 (81%)

Query: 106 YAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
           YAPN +KKAVIGVGHG+K QIHMMLK+LMP+  FKG DAADALAIA+CHA++  S   + 
Sbjct: 1   YAPNAVKKAVIGVGHGEKHQIHMMLKILMPKVEFKGDDAADALAIAICHAHNRGSNRMRQ 60

Query: 166 A 166
           A
Sbjct: 61  A 61


>gi|196251057|ref|ZP_03149738.1| conserved hypothetical protein [Geobacillus sp. G11MC16]
 gi|196209429|gb|EDY04207.1| conserved hypothetical protein [Geobacillus sp. G11MC16]
          Length = 163

 Score = 53.8 bits (129), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 51/123 (41%), Gaps = 12/123 (9%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R +GIDP L  TG  I+   G     + +  I      S   R+  L + +T  +   +
Sbjct: 1   MRFVGIDPSL-HTGLVILSGQG---KIIEAKEI--SKDGSDPARMNALIQEVTYYV---Q 51

Query: 65  PEE-AAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           P++  A+E       +     LG       +      +P  + AP+ +KK     G+ +K
Sbjct: 52  PDDFVAIEG--FGYASQRGFLLGGIGWGMRMELYRRGVPYIDVAPSLVKKFAGAKGNANK 109

Query: 124 KQI 126
           +++
Sbjct: 110 EKV 112


>gi|194015195|ref|ZP_03053811.1| hypothetical protein BAT_0150 [Bacillus pumilus ATCC 7061]
 gi|194012599|gb|EDW22165.1| hypothetical protein BAT_0150 [Bacillus pumilus ATCC 7061]
          Length = 186

 Score = 53.8 bits (129), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 26/168 (15%), Positives = 55/168 (32%), Gaps = 18/168 (10%)

Query: 2   RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
            K IR +  D  +   G  I++V        +   +     +S A R   +       + 
Sbjct: 4   AKPIRCLAFDTSMTCPGVAIIEVRKGKPIIKALSHVKPNTSRSHAHRAEVIEGWAMLFLD 63

Query: 62  NW----RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEY----------- 106
                   +    E  F  K + +   +  A      + +   +   +Y           
Sbjct: 64  KHVGTAGFDYVVRED-FAGKTSRSNYPVLSAWNACERATSRFGLTFDKYKKPGKKTEDLG 122

Query: 107 -APNTIKKAVIGVGHGDKKQIHMMLKMLMP-ESFFKGKDAADALAIAV 152
            +   +K  V G G+ +K ++   ++ +   +  F   D +DA AI +
Sbjct: 123 ISATRVKSLVAGSGNAEKDEVEAGVRRITGYDGTFANFDESDAAAIGL 170


>gi|308172799|ref|YP_003919504.1| hypothetical protein BAMF_0908 [Bacillus amyloliquefaciens DSM 7]
 gi|307605663|emb|CBI42034.1| hypothetical protein predicted by Glimmer/Critica [Bacillus
           amyloliquefaciens DSM 7]
          Length = 187

 Score = 53.0 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/169 (15%), Positives = 54/169 (31%), Gaps = 19/169 (11%)

Query: 2   RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
            K IR +  D  +   G  +++V        +   +     +S A R   +       + 
Sbjct: 4   AKPIRCLAFDTSMTCPGVAVIEVRNRKPTIKALSHVKPNSSRSHAHRAEVIEGWAMMFLD 63

Query: 62  NWRP----EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEY----------- 106
              P    +    E  F  K + +   +  A      + +   +   +Y           
Sbjct: 64  KNYPRDGFDYVVRED-FAGKTSTSNYPVLAAWNACERATSRFELTFDKYWKTPNAKQPQL 122

Query: 107 --APNTIKKAVIGVGHGDKKQIHMMLKMLMPES-FFKGKDAADALAIAV 152
             +   +K  V G G  +K  +   ++ +   +  F   D +DA AI +
Sbjct: 123 GISATRVKALVAGSGSAEKDAVKTAVRRMTGYTGEFANFDESDAAAIGL 171


>gi|152982978|ref|YP_001354444.1| hypothetical protein mma_2754 [Janthinobacterium sp. Marseille]
 gi|151283055|gb|ABR91465.1| Hypothetical protein mma_2754 [Janthinobacterium sp. Marseille]
          Length = 258

 Score = 52.7 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/153 (22%), Positives = 51/153 (33%), Gaps = 22/153 (14%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRL---CQLYEGLTDVIKNW 63
           I+ +D G   TGW +    G +      GTI S        R       Y      +   
Sbjct: 109 ILALDLGTT-TGWAL---RGRD------GTICSSSEAFKPQRFEGGGMRYLRFKRWLTEI 158

Query: 64  RPEEAAVEQVFVNKDAVAT-LKLGQARAIAILS----PALARIPVSEYAPNTIKKAVIGV 118
           +     ++ VF  +      +    A    +          +IP       TIKK   G 
Sbjct: 159 KQSCDGIDAVFFEEVRRHAGVDAAHAYGGFMAHLTAWCEHHKIPYQGVPVGTIKKHATGK 218

Query: 119 GHGDKKQIHMMLKMLMPESFFKGKD-AADALAI 150
           G+  K +   M+  +    F  G D  +DALAI
Sbjct: 219 GNASKDE---MIGAMRQRGFQPGDDNESDALAI 248


>gi|163867626|ref|YP_001608825.1| hypothetical protein Btr_0369 [Bartonella tribocorum CIP 105476]
 gi|161017272|emb|CAK00830.1| phage-related conserved hypothetical protein [Bartonella tribocorum
           CIP 105476]
          Length = 159

 Score = 52.3 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/155 (23%), Positives = 53/155 (34%), Gaps = 26/155 (16%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRL---CQLYEGLTDVIKN- 62
           I+ +D G  +TGW + D           G I S      + R       Y      +   
Sbjct: 8   ILCLDLG-TKTGWALRDAD---------GFITSDTEHFQSRRFEGGGMRYLRFKKWLTEL 57

Query: 63  ----WRPEEAAVEQV--FVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVI 116
               +  +    E+V   V  DA        A           +IP       TIKKA  
Sbjct: 58  KRSVYEIDAVYFEEVRRHVGTDASHVYGGFLA--TLTAWCEHHQIPYEGIPVGTIKKATT 115

Query: 117 GVGHGDKKQIHMMLKMLMPESFFKGKD-AADALAI 150
           G G+  K++   M+K +  +      D  ADALAI
Sbjct: 116 GKGNASKEE---MIKAMRAKGHAPCDDNEADALAI 147


>gi|163868155|ref|YP_001609359.1| hypothetical protein Btr_0969 [Bartonella tribocorum CIP 105476]
 gi|161017806|emb|CAK01364.1| phage-related conserved hypothetical protein [Bartonella tribocorum
           CIP 105476]
          Length = 158

 Score = 52.3 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/163 (23%), Positives = 60/163 (36%), Gaps = 29/163 (17%)

Query: 1   MRKSIR-IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVR---------QSLAFRLC 50
           M  + R I+ +D G  +TGW I    G     + SG +    R               L 
Sbjct: 1   MINNTRTILCLDLGS-KTGWAICGADG----HIVSGVMNFQPRRFEGGGMRYLRFKRCLS 55

Query: 51  QLYEGLTDVIKNWRPEEAAVEQV--FVNKDAVATLKLGQARAIAILSPALARIPVSEYAP 108
           ++ + +  +      +    E+V   V  DA        A           +IP      
Sbjct: 56  EIKQAVGSI------DAVYFEEVRRHVGTDASHVYGGFLA--TLTAWCEHHQIPYEGIPV 107

Query: 109 NTIKKAVIGVGHGDKKQIHMMLKMLMPESFFKGKD-AADALAI 150
            TIKKA  G G+  K++   M+K++  +      D  ADALAI
Sbjct: 108 CTIKKATTGKGNASKEE---MIKVMRAKGHAPEDDNEADALAI 147


>gi|265763460|ref|ZP_06092028.1| predicted protein [Bacteroides sp. 2_1_16]
 gi|299145844|ref|ZP_07038912.1| putative crossover junction endodeoxyribonuclease RuvC [Bacteroides
           sp. 3_1_23]
 gi|263256068|gb|EEZ27414.1| predicted protein [Bacteroides sp. 2_1_16]
 gi|298516335|gb|EFI40216.1| putative crossover junction endodeoxyribonuclease RuvC [Bacteroides
           sp. 3_1_23]
          Length = 166

 Score = 52.3 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 46/110 (41%), Gaps = 11/110 (10%)

Query: 50  CQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEY-AP 108
              Y+ L + I+ +  +    E V V+K  +A  KL + R I  L  A   +P  ++   
Sbjct: 56  KMFYDTLVEFIQKYNIKLIIAEDVCVSKHFIAARKLSEFRGILYLICAQLGLPEPKFINV 115

Query: 109 NTIKKAVIGVGHGDKKQIHMMLKMLMPESFFKGKD--AADALAIAVCHAY 156
           +T+KK   G G  DKK    M++  +        D   ADA      H +
Sbjct: 116 STVKKWATGDGKADKK---KMIEYCIKRWNITPVDDNMADA-----THIF 157


>gi|163867791|ref|YP_001608995.1| hypothetical protein Btr_0550 [Bartonella tribocorum CIP 105476]
 gi|161017442|emb|CAK01000.1| phage-related conserved hypothetical protein [Bartonella tribocorum
           CIP 105476]
          Length = 159

 Score = 51.9 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 56/162 (34%), Gaps = 40/162 (24%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFR---------------LCQ 51
           I+ +D G  +TGW + D  G           ++   +    R               L +
Sbjct: 8   ILCLDLG-TKTGWALCDADG----------FITSDTEHFQSRRFEGGGMRYLRFKKWLSE 56

Query: 52  LYEGLTDVIKNWRPEEAAVEQV--FVNKDAVATLKLGQARAIAILSPALARIPVSEYAPN 109
           L   + ++      +    E+V   V  DA        A           +IP       
Sbjct: 57  LKRSVDEI------DAVYFEEVRRHVGTDASHVYGGFLA--TLTAWCEHHQIPYEGIPVG 108

Query: 110 TIKKAVIGVGHGDKKQIHMMLKMLMPESFFKGKD-AADALAI 150
           TIKKA  G G+  K++   M+K +  +      D  ADALAI
Sbjct: 109 TIKKATTGKGNASKEE---MIKTMRAKGHAPCDDNEADALAI 147


>gi|261736026|ref|YP_003257368.1| hypothetical protein pZL12-4 [Streptomyces sp. ZL12]
 gi|261349149|gb|ACX71081.1| hypothetical protein pZL12-4 [Streptomyces sp. ZL12]
          Length = 201

 Score = 51.9 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 48/150 (32%), Gaps = 15/150 (10%)

Query: 7   IIGIDPGLRRTGWG-------IVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDV 59
           ++G+DP L  TG         ++            G      +     RL  +   +  V
Sbjct: 19  VVGLDPSLTATGIASTRGWCEVIGY--RKARAKDPGI----TQLPHTERLTAMRNLVDQV 72

Query: 60  IKNW-RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGV 118
           +     P+   +E   V++      + G             ++P+   +PN       G 
Sbjct: 73  VTAIGHPDLVVIELPAVSRSGGGAHERGWFWWQLYNQLHNTQLPIGLLSPNQRALYATGK 132

Query: 119 GHGDKKQIHMMLKMLMPESFFKGKD-AADA 147
           G+  K  +   +    P     G D AADA
Sbjct: 133 GNAAKGAVIDQVSRRFPAWSTDGNDNAADA 162


>gi|163797573|ref|ZP_02191523.1| hypothetical protein BAL199_00475 [alpha proteobacterium BAL199]
 gi|159177172|gb|EDP61732.1| hypothetical protein BAL199_00475 [alpha proteobacterium BAL199]
          Length = 162

 Score = 51.5 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 55/147 (37%), Gaps = 12/147 (8%)

Query: 8   IGIDPGLRRTGWGIVDVAGDNLCFVSSGTI--VSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           + +D G   TGW +          ++SGT+            R  +    LT++ +   P
Sbjct: 11  LALDLGTT-TGWALRAAD----SLITSGTVSFRPSRYDGGGMRYLRFTNWLTEIDRLSGP 65

Query: 66  EEAAV--EQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
             AA+  E+V  +    A    G   A       L  +P       T K+ + G G+  K
Sbjct: 66  -IAAIWFEEVRRHAGTDAAHVYGGLMATLTAWAELRGVPYEGVPVGTWKRCLCGKGNASK 124

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAI 150
            ++   +  +       G D ADALAI
Sbjct: 125 GEVTEAV--IAKGFSPAGSDEADALAI 149


>gi|194015314|ref|ZP_03053930.1| conserved hypothetical protein [Bacillus pumilus ATCC 7061]
 gi|194012718|gb|EDW22284.1| conserved hypothetical protein [Bacillus pumilus ATCC 7061]
          Length = 163

 Score = 51.5 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 48/124 (38%), Gaps = 11/124 (8%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R +GIDP   +TG  I D  G+    +    I +        R   L   + ++I+   
Sbjct: 1   MRFVGIDP-STKTGLVIQDANGN--VILDKEIISAVKGD--PQRFMDLASQIINLIE--- 52

Query: 65  P-EEAAVEQVFVNKDAVATLKLGQARA-IAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
           P +   +E  F      A++ +      +        +I   +  P T+KK   G G+  
Sbjct: 53  PNDFVCIEG-FSYGSKGASVDIQYGIGWLIRARLINKKIDYVDVPPTTLKKFATGKGNVK 111

Query: 123 KKQI 126
           K QI
Sbjct: 112 KDQI 115


>gi|167465488|ref|ZP_02330577.1| crossover junction endodeoxyribonuclease RuvC [Paenibacillus larvae
           subsp. larvae BRL-230010]
 gi|167465629|ref|ZP_02330718.1| crossover junction endodeoxyribonuclease RuvC [Paenibacillus larvae
           subsp. larvae BRL-230010]
          Length = 76

 Score = 51.1 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 35/71 (49%), Gaps = 6/71 (8%)

Query: 95  SPALARIPVSEY-APNTIKKAVIGVGHGDKKQIHMMLKMLMPES---FFKGKDAADALAI 150
           +       V+++ +P+T+K+ V G G  +K+ +   ++ L+       F   D +DA A+
Sbjct: 4   ALERFGQHVTDHLSPSTVKRIVAGNGKAEKEDVAEEVRKLLGLPLDHVFASDDESDACAV 63

Query: 151 AVCHAYHANSG 161
            +  A+   +G
Sbjct: 64  VL--AWLIQNG 72


>gi|318057461|ref|ZP_07976184.1| hypothetical protein SSA3_05943 [Streptomyces sp. SA3_actG]
 gi|318076915|ref|ZP_07984247.1| hypothetical protein SSA3_09375 [Streptomyces sp. SA3_actF]
          Length = 197

 Score = 51.1 bits (122), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 33/152 (21%), Positives = 55/152 (36%), Gaps = 19/152 (12%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           +IG+D  L  TG     VAG+         I +  +     RL  + + +   I+    +
Sbjct: 28  VIGLDLSLTSTG-----VAGEGWT----DNIRT--KLPGDARLVHVIDTVKTFIR--SAD 74

Query: 67  EAAVEQVFVNKDAVAT-LKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
              +E       A+A    L   R +         IP +   P+T+K  V G G   K +
Sbjct: 75  LVVMEGPAYGHAALAGHEDLAGLRVLVRTYCYRQGIPYAAVPPSTLKLYVAGYGKASKGE 134

Query: 126 IHMML--KMLMPESFFKGKDAADA---LAIAV 152
           +   +  +  +        D ADA   +A A 
Sbjct: 135 VRSAVRDRYGIECEGPARYDEADAYSLVAAAY 166


>gi|257468541|ref|ZP_05632635.1| hypothetical protein FulcA4_04319 [Fusobacterium ulcerans ATCC
           49185]
 gi|317062800|ref|ZP_07927285.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
 gi|313688476|gb|EFS25311.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
          Length = 251

 Score = 50.7 bits (121), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 52/148 (35%), Gaps = 17/148 (11%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTI---VSCVRQ--SLAFRLCQLYEGLTDVIK 61
           ++ ID     TG            +  +GTI    +          R  ++ + L ++++
Sbjct: 104 VLSIDLSTTSTGIA----------YSKNGTIVRWKTIKSDYIDFRERGLEIVKQLVEILE 153

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
               +   +E V++  ++    KL + R +         + +        K  + GV   
Sbjct: 154 KGMIDVVILEDVYLGLNSDVLTKLSEVRGMLTYHIKKLNLDLLLVPAVLWKHRIEGVPTH 213

Query: 122 DKKQIHMMLKMLMP--ESFFKGKDAADA 147
            ++Q   M+K      E      D+ADA
Sbjct: 214 RQEQKEFMMKKFFEYTEVEADSDDSADA 241


>gi|223933579|ref|ZP_03625560.1| unknown phage protein [Streptococcus suis 89/1591]
 gi|223897775|gb|EEF64155.1| unknown phage protein [Streptococcus suis 89/1591]
          Length = 172

 Score = 50.7 bits (121), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 55/151 (36%), Gaps = 17/151 (11%)

Query: 8   IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDV----IKNW 63
           + +D     TGW + D +      + SG      ++S   R   +   L  +    I+ +
Sbjct: 6   LSLDVSTTGTGWAVFDGS----TLIQSGV-SKPKQKSFYERAKAIASELKTIQLRAIQEY 60

Query: 64  -RPEE-AAVEQ-VFVNKDAVATLKLGQARAIAILSPALARIPVSEYAP-NTIKKAVIGVG 119
            +P E   VEQ   +  +  +++K+G A  + +       +     +      K      
Sbjct: 61  DKPFEDIVVEQNTVLGPNQQSSIKIGIATGVILGRLLSEEVYFVNVSTWRKYWKF--SYK 118

Query: 120 HGDKKQI--HMMLKMLMPESFFKGKDAADAL 148
              KK +    +L +L   +     D ADA+
Sbjct: 119 DRSKKSMKQQSVLTVLREFNKQVKDDEADAI 149


>gi|317506645|ref|ZP_07964436.1| hypothetical protein HMPREF9336_00806 [Segniliparus rugosus ATCC
           BAA-974]
 gi|316255077|gb|EFV14356.1| hypothetical protein HMPREF9336_00806 [Segniliparus rugosus ATCC
           BAA-974]
          Length = 208

 Score = 50.7 bits (121), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 32/60 (53%)

Query: 96  PALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHA 155
                +PV+  AP+T+KK  +G G+  K ++    + L PE   K  D ADA+ +A+  A
Sbjct: 114 LHCLGVPVAVCAPSTLKKFAVGTGNAKKLEVFGAAQHLYPELVLKKDDEADAIFLALIGA 173


>gi|240850005|ref|YP_002971398.1| phage related protein [Bartonella grahamii as4aup]
 gi|240267128|gb|ACS50716.1| phage related protein [Bartonella grahamii as4aup]
          Length = 158

 Score = 50.0 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/153 (24%), Positives = 56/153 (36%), Gaps = 22/153 (14%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRL---CQLYEGLTDVIKNW 63
           I+ +D G  +TGW I    G      ++G I S      + R       Y      +   
Sbjct: 8   ILCLDLG-TKTGWAI---CG------ANGHITSDTEDFQSRRFEGGGMRYLRFKRWLTEL 57

Query: 64  R-----PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGV 118
           +      +    E+V  +    A+   G   A         +IP       TIKKA  G 
Sbjct: 58  KRSVDEIDAVYFEEVRRHVGTDASHIYGGFLATLTAWCEHHQIPYEGIPVGTIKKATTGK 117

Query: 119 GHGDKKQIHMMLKMLMPESFFKGKD-AADALAI 150
           G+  K++   M+K +  +      D  ADALAI
Sbjct: 118 GNASKEE---MIKAICSKGHTPKDDNEADALAI 147


>gi|220926727|ref|YP_002502029.1| putative bacteriophage-like protein [Methylobacterium nodulans ORS
           2060]
 gi|219951334|gb|ACL61726.1| putative bacteriophage-related protein [Methylobacterium nodulans
           ORS 2060]
          Length = 174

 Score = 50.0 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 59/170 (34%), Gaps = 14/170 (8%)

Query: 5   IR-IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEG-LTDVIKN 62
           +R I+ +D  +  TGW +    GD     + G        +   +L   ++  L+  I  
Sbjct: 1   MRKILALDLSVASTGWALGSPDGDP----AFGHYTLPSTGNDIGKLLAAFQDWLSLKIAG 56

Query: 63  WRPEEAAVEQVFV---NKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVG 119
                   E   +           KL     +  L    A I   E    T KK   G G
Sbjct: 57  EDIAIVVFEAPILTPGKTHITTARKLMCLAGVTELVCHQAEIRCIEENIQTNKKRFAGHG 116

Query: 120 HGDKKQIHMMLKMLMPESFFKGKDAADALAI---AVCHAYHANSGYYKIA 166
             DK+ +  + +    +   +  D ADALA+    VC    A++G +   
Sbjct: 117 RADKETMMHVARRYGWD--VQRDDEADALALWVGGVCTFAKAHAGRFLAG 164


>gi|91975509|ref|YP_568168.1| CRISPR-associated Cas5e family protein [Rhodopseudomonas
          palustris BisB5]
 gi|91681965|gb|ABE38267.1| CRISPR-associated endonuclease, Csn1 family [Rhodopseudomonas
          palustris BisB5]
          Length = 1064

 Score = 49.6 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 2/38 (5%)

Query: 1  MRK--SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGT 36
          M +  + RI+GID G+   GWG+++V   +   ++SG 
Sbjct: 1  MSECVTRRILGIDLGIASCGWGVIEVGEASGSIIASGV 38


>gi|319938079|ref|ZP_08012479.1| hypothetical protein HMPREF9488_03315 [Coprobacillus sp. 29_1]
 gi|319806985|gb|EFW03624.1| hypothetical protein HMPREF9488_03315 [Coprobacillus sp. 29_1]
          Length = 189

 Score = 49.2 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 53/154 (34%), Gaps = 22/154 (14%)

Query: 10  IDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCV-RQSLA------FRLCQ--LYEGLTDVI 60
           +D     TG  ++         +    I     ++ L        +L    +   L  + 
Sbjct: 22  LDASTSNTGV-VIYEEKSKRILLDD--INLSKIKKPLQMKPEDFEKLKFGCIKNYLDTLK 78

Query: 61  KNWRPEEAAVEQVFVN-KDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVG 119
             +      +E +F+  K   ++  L +      L       P    +P+ IKK + G G
Sbjct: 79  NQYFITGVYMEGIFIYPKRLKSSQTLLKLHG--FLMSYFIDTPQYFLSPSVIKKNITGDG 136

Query: 120 HGDKKQIHMMLKMLMPES---FFKGKDAADALAI 150
           H  K+     ++ ++       F  +D +DA A+
Sbjct: 137 HAKKE----TVREILGLKYGYIFPNEDISDAFAL 166


>gi|294678257|ref|YP_003578872.1| hypothetical protein RCAP_rcc02736 [Rhodobacter capsulatus SB 1003]
 gi|294477077|gb|ADE86465.1| conserved hypothetical protein [Rhodobacter capsulatus SB 1003]
          Length = 173

 Score = 49.2 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/149 (26%), Positives = 57/149 (38%), Gaps = 14/149 (9%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVR--QSLAFRLCQLYEGLTDVIKNWR 64
           I+ +D G   TGW I      +   ++SGT+            R  +L   LT++ +   
Sbjct: 22  ILALDLGTS-TGWAI----RSHDALITSGTVSLRPGRFDGGGMRYLRLTNWLTEIDRLSG 76

Query: 65  PEEAAV--EQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
           P  AA+  E+V  +    A    G   A       L  IP       TIK+   G G+ D
Sbjct: 77  P-IAAIWFEEVRRHVGTDAAHVYGGLMATLTAWAELRGIPYQGVPVGTIKRHATGKGNAD 135

Query: 123 KKQIHMMLKMLMPESFFKGKD-AADALAI 150
           K     M+       F    D  ADA+AI
Sbjct: 136 KD---AMVAAARARGFSPADDNEADAIAI 161


>gi|117925359|ref|YP_865976.1| bacteriophage-related protein [Magnetococcus sp. MC-1]
 gi|117609115|gb|ABK44570.1| putative bacteriophage-related protein [Magnetococcus sp. MC-1]
          Length = 166

 Score = 49.2 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/82 (19%), Positives = 30/82 (36%), Gaps = 6/82 (7%)

Query: 73  VFVNKDAVATLKLGQARAIAILS----PALARIPVSEYAPNTIKKAVIGVGHGDKKQIHM 128
           +F      + +         +           +P       +IKK+  G G+  K+Q+  
Sbjct: 76  LFEEVRRHSGVGASHVYGGFLAHLTAWAEHHEVPYMGVPVGSIKKSATGKGNASKEQVIH 135

Query: 129 MLKMLMPESFFKGKDAADALAI 150
            +K L      +  + ADALA+
Sbjct: 136 AMKRLG--YTPEDDNEADALAL 155


>gi|319408082|emb|CBI81735.1| conserved hypothetical protein [Bartonella schoenbuchensis R1]
          Length = 155

 Score = 49.2 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/152 (25%), Positives = 62/152 (40%), Gaps = 12/152 (7%)

Query: 3   KSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTI--VSCVRQSLAFRLCQLYEGLTD-- 58
            S+ I+ +D G  +TGW I    G     ++SGT+   +   +    R  +  + LT+  
Sbjct: 4   NSLTILCLDLG-TKTGWAISSEDGT----IASGTVNFSTRRFEGGGMRYLRFKQWLTETK 58

Query: 59  VIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGV 118
            I     +    E+V  +    A    G   AI        +IP       TIKKA+ G 
Sbjct: 59  AILEH-IDAVYFEEVRCHIGTDAAHVYGGLLAILTSWCEHHQIPYQGIPIATIKKAMTGR 117

Query: 119 GHGDKKQIHMMLKMLMPESFFKGKDAADALAI 150
           G+  K ++   ++        +  + ADALAI
Sbjct: 118 GNAPKTEMIKAVRA--KGHEPEDDNEADALAI 147


>gi|33601194|ref|NP_888754.1| hypothetical protein BB2210 [Bordetella bronchiseptica RB50]
 gi|33602484|ref|NP_890044.1| hypothetical protein BB3509 [Bordetella bronchiseptica RB50]
 gi|33575629|emb|CAE32707.1| phage-related conserved hypothetical protein [Bordetella
           bronchiseptica RB50]
 gi|33576923|emb|CAE34003.1| phage-related conserved hypothetical protein [Bordetella
           bronchiseptica RB50]
          Length = 227

 Score = 48.8 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 48/144 (33%), Gaps = 5/144 (3%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+ +D G  + GW +            +         S   R  +    L +VI   +  
Sbjct: 78  ILALDLG-TKLGWAV-RGRDGRTSH-GTEVFTPRASWSPGQRWLRARSFLVEVITQRQVH 134

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A E V  +    A    G    I  +     R+ +      TIKK   G G+ DK  +
Sbjct: 135 AIAYEDVKRHTGTDAAHAYGAFLCIVEMLADSHRLRLLPVGVGTIKKHWTGKGNADKADM 194

Query: 127 HMMLKMLMPESFFKGKDAADALAI 150
               K        +  + ADALAI
Sbjct: 195 IAEAKA--RGFRPETDNDADALAI 216


>gi|240850358|ref|YP_002971751.1| phage related protein [Bartonella grahamii as4aup]
 gi|240267481|gb|ACS51069.1| phage related protein [Bartonella grahamii as4aup]
          Length = 128

 Score = 48.8 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 4/88 (4%)

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           + +    E+V  +    A    G   A         +IP      +TIKKA  G G+  K
Sbjct: 31  QIDVVYFEEVRRHVGTDAAHVYGGLLATLTAWCEHHQIPYEGIPVSTIKKATTGKGNASK 90

Query: 124 KQIHMMLKMLMPESFFKGKD-AADALAI 150
           ++   M+K +  +      D  ADALAI
Sbjct: 91  EE---MIKAMRSKGHAPCDDNEADALAI 115


>gi|295402332|ref|ZP_06812287.1| conserved hypothetical protein [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|294975605|gb|EFG51228.1| conserved hypothetical protein [Geobacillus thermoglucosidasius
           C56-YS93]
          Length = 163

 Score = 48.8 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 47/126 (37%), Gaps = 11/126 (8%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           MR   R +GIDP LR TG+  +   G     +    I          R+  L + + D +
Sbjct: 1   MRFE-RFVGIDPSLR-TGFVALSPYG---EVIEMKEIERDGDD--PARMSDLIQAVVDAV 53

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
                +  A+E       +     LG       +      IP  + AP+ +KK     G+
Sbjct: 54  --HDTDFVAIEG--FGYASQKGFLLGGIGWGIRIGLYRRGIPYVDVAPSLLKKFAGAKGN 109

Query: 121 GDKKQI 126
             K+Q+
Sbjct: 110 AKKEQV 115


>gi|117924540|ref|YP_865157.1| hypothetical protein Mmc1_1240 [Magnetococcus sp. MC-1]
 gi|117608296|gb|ABK43751.1| conserved hypothetical protein [Magnetococcus sp. MC-1]
          Length = 166

 Score = 48.8 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 96  PALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESFFKGKDAADALAI 150
                +P       +IKK+  G G+  K+Q+   +K L      +  + ADALA+
Sbjct: 103 AEHHEVPYMGVPVGSIKKSATGKGNASKEQVTHAMKRLG--YTPEDDNEADALAL 155


>gi|6723241|dbj|BAA89637.1| hypothetical protein [Wolbachia phage WO]
          Length = 151

 Score = 48.4 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/152 (22%), Positives = 62/152 (40%), Gaps = 21/152 (13%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRL---CQLYEGLTDVIK 61
           + I+ +D G ++TGW I          +++G I S  +     R       +    + + 
Sbjct: 1   MSILTLDLG-KQTGWAI----------LTNGVIKSGSKSFHGSRFSGGGMCFLNFRNWLN 49

Query: 62  NWRPEEAAV--EQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVG 119
           + + + +AV  E+V  +    A    G   A+         IP       TIK+ + G G
Sbjct: 50  SLK-DISAVYFEEVRRHLGTDAAHCYGGFLAVLSAWCEENNIPYQGVNVKTIKRFIAGKG 108

Query: 120 HGDKKQIHMMLKMLMPESFFKGKD-AADALAI 150
           +  K ++   ++    +SF    D  ADALA+
Sbjct: 109 NASKSEVIEAIR---EKSFSPRDDNEADALAL 137


>gi|29135076|ref|NP_803706.1| ORF140 [Pseudomonas phage phiKZ]
 gi|18996605|gb|AAL83041.1|AF399011_140 PHIKZ140 [Pseudomonas phage phiKZ]
          Length = 187

 Score = 48.4 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/175 (17%), Positives = 61/175 (34%), Gaps = 28/175 (16%)

Query: 3   KSIRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAF------------RL 49
           +  R++ +DPG +  G  I++     +   V +         + A+            R+
Sbjct: 9   EPFRVLALDPGSQNLGIAILEDKLDGSNKVVRNAFTCHLKDTNPAYAAISEVHGSRFTRM 68

Query: 50  CQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALAR--IPVSEYA 107
            Q+ + + +++   +P    VE  ++ K A +   L +       +       IP+    
Sbjct: 69  QQMSDVVLNILHTEKPHAVIVESNYLGKFAQSFAVLVECVTYVHRALYEYDRFIPLYMID 128

Query: 108 PNTIK-----KAVIGVGHGDKKQIHMMLKMLMPES-----FFKGKDAADALAIAV 152
           P T+K     K V G     K  +   ++     +           + DA AIA 
Sbjct: 129 PTTVKINAGMKKVKGT---TKDDVKEAMRSRTDITWNIDIDSLDDHSMDACAIAY 180


>gi|49475162|ref|YP_033203.1| hypothetical protein BH03610 [Bartonella henselae str. Houston-1]
 gi|49237967|emb|CAF27172.1| hypothetical prophage protein [Bartonella henselae str. Houston-1]
          Length = 158

 Score = 48.4 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 38/154 (24%), Positives = 60/154 (38%), Gaps = 11/154 (7%)

Query: 1   MRKSIR-IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVR--QSLAFRLCQLYEGLT 57
           M  + R I+ +D G  +TGW I    G     + SG +    R  +    R  +  + LT
Sbjct: 1   MINNTRTILCLDLGS-KTGWAICGADG----HIFSGVMNFQPRRFEGGGMRYLRFKQWLT 55

Query: 58  DV-IKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVI 116
           ++ +   R +    E+V  +    A    G   A         +IP       TIKK   
Sbjct: 56  EMKMTARRIDAVYFEEVRRHVGTDAAHVYGGLLATLTAWCEHHQIPYEGIPVGTIKKETT 115

Query: 117 GVGHGDKKQIHMMLKMLMPESFFKGKDAADALAI 150
           G G+  K+++   +         K  + ADALAI
Sbjct: 116 GKGNASKEEMIKAVCA--KGHAPKDDNEADALAI 147


>gi|83648330|ref|YP_436765.1| Holliday junction resolvasome, endonuclease subunit [Hahella
           chejuensis KCTC 2396]
 gi|83636373|gb|ABC32340.1| Holliday junction resolvasome, endonuclease subunit [Hahella
           chejuensis KCTC 2396]
          Length = 159

 Score = 48.4 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/148 (22%), Positives = 54/148 (36%), Gaps = 12/148 (8%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVR--QSLAFRLCQLYEGLTDVIKNW- 63
           ++ +D G R TGW     A      + SG +    +  +    R  +    LT++  N  
Sbjct: 5   VLALDLGTR-TGWA----AKGKDRAIVSGVMNFKPQRFEGGGMRFLRFKRWLTELKANLD 59

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
             +    E+V  +    +    G   A          IP       TIK+ V G G+  K
Sbjct: 60  GIDALYFEEVRRHVSTDSAHAYGGFLATLTAWCEHHEIPYQGVPVGTIKRHVSGKGNASK 119

Query: 124 KQIHMMLKMLMPESFFKGKD-AADALAI 150
           + +   ++      F    D  ADALAI
Sbjct: 120 EDVIAAVR---KRGFNPSDDNEADALAI 144


>gi|319408675|emb|CBI82330.1| conserved hypothetical protein [Bartonella schoenbuchensis R1]
          Length = 156

 Score = 48.0 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 37/148 (25%), Positives = 60/148 (40%), Gaps = 12/148 (8%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTI--VSCVRQSLAFRLCQLYEGLTD--VIKN 62
           I+ +D G  +TGW I    G     ++SGT+   +   +    R  +  + LT+   I  
Sbjct: 8   ILCLDLG-TKTGWAISSEDGT----IASGTVNFSTRRFEGGGMRYLRFKQWLTETKAILE 62

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
              +    E+V  +    A    G   AI        +IP       TIKKA+ G G+  
Sbjct: 63  H-IDAVYFEEVRCHIGTDAAHVYGGLLAILTSWCEHHQIPYQGIPIATIKKAMTGRGNAP 121

Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAI 150
           K ++   ++        +  + ADALAI
Sbjct: 122 KTEMIKAVRA--KGHEPEDDNEADALAI 147


>gi|302519903|ref|ZP_07272245.1| conserved hypothetical protein [Streptomyces sp. SPB78]
 gi|302428798|gb|EFL00614.1| conserved hypothetical protein [Streptomyces sp. SPB78]
          Length = 249

 Score = 48.0 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 47/120 (39%), Gaps = 11/120 (9%)

Query: 2   RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
              +R+IG+D  +  TG  +    G          I +        RL  + + + D + 
Sbjct: 65  PAGVRVIGLDLSITSTGVCL--PDGTTYR------IKTRA-ADADRRLLHIRDAVADDLA 115

Query: 62  NWRPEEAAVEQVFVNKDAVATLK-LGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
             RP  A +E +   K   A LK +G+   + + +     +P +   P T+K+     G+
Sbjct: 116 EHRPHLAVIEDL-PTKMHAAALKIIGKLHGVVVGALLDTDVPYAYVPPATLKQFACDKGN 174


>gi|169842226|ref|ZP_02875331.1| hypothetical protein cdivTM_33987 [candidate division TM7
          single-cell isolate TM7a]
          Length = 50

 Score = 47.6 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 18/33 (54%)

Query: 42 RQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVF 74
             L  RL ++Y  L ++I    P+  +VE++F
Sbjct: 8  ETPLPDRLEEIYNSLKEIIHETNPDIMSVEKLF 40


>gi|117926122|ref|YP_866739.1| hypothetical protein Mmc1_2840 [Magnetococcus sp. MC-1]
 gi|117609878|gb|ABK45333.1| conserved hypothetical protein [Magnetococcus sp. MC-1]
          Length = 166

 Score = 47.6 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 96  PALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESFFKGKDAADALAI 150
                +P       +IKK+  G G+  K+Q+   +K L      +  + ADALA+
Sbjct: 103 AEHHEVPYMGVPVGSIKKSATGKGNASKEQVIHAMKHLG--YAPEDDNEADALAL 155


>gi|41057228|ref|NP_958254.1| hypothetical protein VWBp12 [Streptomyces phage VWB]
 gi|39656051|gb|AAR29702.1| hypothetical protein [Streptomyces phage VWB]
          Length = 258

 Score = 47.3 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 48/123 (39%), Gaps = 11/123 (8%)

Query: 4   SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
            +R++G+D  L  TG  +    G  +       I +  +     RL Q+ + +   +   
Sbjct: 84  GLRVLGLDLSLTSTGVCL--PDGSTVR------IKTRQKDG-DRRLVQVRDFIRAAVAGD 134

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           RP  A +E +   K A++     +     +     A +P +   P T+K      G  DK
Sbjct: 135 RPHVAVIEDL--PKHAMSAGLTARVHGPVVCELIDAGVPYAYVVPATLKSYACDHGAADK 192

Query: 124 KQI 126
            ++
Sbjct: 193 SRM 195


>gi|319650103|ref|ZP_08004252.1| hypothetical protein HMPREF1013_00857 [Bacillus sp. 2_A_57_CT2]
 gi|317398284|gb|EFV78973.1| hypothetical protein HMPREF1013_00857 [Bacillus sp. 2_A_57_CT2]
          Length = 193

 Score = 47.3 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 36/164 (21%), Positives = 61/164 (37%), Gaps = 28/164 (17%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R +GIDP   +TG+  +D  G+ L        ++ V      R+  L   + +V+ + +
Sbjct: 1   MRFVGIDPSS-KTGFVALDEHGEVLRAKE----LTGVSDEDPRRMVTL---INEVVAHIK 52

Query: 65  P-EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKK--AVIG---- 117
           P +   +E      D    +  G             ++   E APN +KK   V G    
Sbjct: 53  PGDFICIEG--FPFDTQKAMFAGGLHHGIRNELFKRKLDYYEVAPNAVKKFVNVTGWVGE 110

Query: 118 -------VGHGDKKQIHMMLKMLMPESFFKGKDAADA--LA-IA 151
                   G   KK +   ++     +  K  +  DA  LA IA
Sbjct: 111 KGSKKRLTGPQKKKVVMAAVQEHFGFT-HKSDNVVDAYVLAKIA 153


>gi|134297350|ref|YP_001121085.1| hypothetical protein Bcep1808_3260 [Burkholderia vietnamiensis G4]
 gi|134140507|gb|ABO56250.1| conserved hypothetical protein [Burkholderia vietnamiensis G4]
          Length = 157

 Score = 47.3 bits (112), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 51/158 (32%), Gaps = 24/158 (15%)

Query: 3   KSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSL-AFRL---CQLYEGLTD 58
            ++ I  +D G + TGW +    G           ++   QS    R       +     
Sbjct: 2   NTMTIFALDLGTQ-TGWALTSRDGS----------ITSGSQSFKPQRFEGGGMRFLRFKR 50

Query: 59  VIKNWR-----PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKK 113
            + + +      ++   E+V  +    A    G             +IP       TIKK
Sbjct: 51  WLTDIKQCNDGIDQVVFEEVRRHVGVDAAHAYGGFMGQLTAWCEHHQIPYQGIPVGTIKK 110

Query: 114 AVIGVGHGDKKQIHMMLKMLMPESFFKGKD-AADALAI 150
              G G+  K +   M+  +         D  ADA+A+
Sbjct: 111 HATGKGNASKDE---MVASVRARGHAPTDDNEADAIAL 145


>gi|17547947|ref|NP_521349.1| bacteriophage-related protein [Ralstonia solanacearum GMI1000]
 gi|17430253|emb|CAD17016.1| putative bacteriophage-related protein [Ralstonia solanacearum
           GMI1000]
          Length = 154

 Score = 46.9 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 47/152 (30%), Gaps = 20/152 (13%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRL---CQLYEGLTDVIKNW 63
           I+ +D G  +TGW         L ++  G+I S  +     R       +      +   
Sbjct: 5   ILALDLG-TKTGWA--------LQYLD-GSITSGTQDFKPKRFEGGGMRFLRFKRWLNEL 54

Query: 64  R-----PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGV 118
           +           E+V  +    A    G              IP       TIKK   G 
Sbjct: 55  KLSCSDINVVYFEEVRRHAGVDAAHIYGGLLGHLSAWCEHHNIPYIGVPVGTIKKHATGK 114

Query: 119 GHGDKKQIHMMLKMLMPESFFKGKDAADALAI 150
           G+  K +I   +            + ADALAI
Sbjct: 115 GNASKDEIIASVSK--RGHEPTDDNEADALAI 144


>gi|319405049|emb|CBI78658.1| conserved hypothetical protein [Bartonella sp. AR 15-3]
          Length = 157

 Score = 46.9 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 39/103 (37%), Gaps = 10/103 (9%)

Query: 49  LCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAP 108
           L ++   +  +      +    E+V  +    A    G   A         +IP      
Sbjct: 51  LMEINRSVDGI------DAVYFEEVRRHVGTDAAHVYGGFLATLTAWCEHHQIPYEGIPV 104

Query: 109 NTIKKAVIGVGHGDKKQIHMMLKMLMPESFFKGKD-AADALAI 150
            TIKKA  G G+  K++   M++ +  +      D  ADALAI
Sbjct: 105 GTIKKATTGKGNASKEE---MIEAMCSKGHSPCDDNEADALAI 144


>gi|282599246|ref|YP_003358558.1| hypothetical protein [Shigella phage phiSboM-AG3]
 gi|226973552|gb|ACO94305.1| conserved hypothetical phage protein [Shigella phage phiSboM-AG3]
          Length = 196

 Score = 46.9 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/135 (14%), Positives = 43/135 (31%), Gaps = 15/135 (11%)

Query: 37  IVSCVRQSLAF-RLCQLYEGLTDVIKNWRPEEAAVEQVFVN--KDAVATLKLGQARAIAI 93
           I+   +      R   + +    V+   +P+   +E   +   K++    +  +  ++  
Sbjct: 50  IMKQPKWETPEERFYNICKWAEAVLLTEKPDAITLEGYAMGNSKNSNNICQTAENTSLLK 109

Query: 94  LSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMP------------ESFFKG 141
            +            P+ +KK     G+ DK  +    + L              +     
Sbjct: 110 QALRRNNFDFQIVTPSHVKKMFTDKGNADKHAMIAHFESLFNVNMRGIMDMLEVKDPKPI 169

Query: 142 KDAADALAIAVCHAY 156
            D  D+ AI  C +Y
Sbjct: 170 DDLVDSFAIMACGSY 184


>gi|321272265|gb|ADW80150.1| putative holliday junction resolvasome [Wolbachia endosymbiont
           wVitA of Nasonia vitripennis phage WOVitA1]
 gi|321272322|gb|ADW80204.1| putative holliday junction resolvasome [Wolbachia endosymbiont
           wVitB of Nasonia vitripennis phage WOVitB]
          Length = 155

 Score = 46.9 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 52/154 (33%), Gaps = 21/154 (13%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRL---CQLYEGLTDVIK 61
           + I+ +D G ++TGW I          ++ G I S  +     R       +      + 
Sbjct: 1   MSILTLDLG-KQTGWAI----------LTDGVIESGSKSFHGSRFSGGGMHFLKFRSWLN 49

Query: 62  NWRPEEAAVEQVFVNKDAVATLK-LGQARAIAILS----PALARIPVSEYAPNTIKKAVI 116
             + + + +E V+  +                +           +P       TIK+ + 
Sbjct: 50  EMKEKFSNIEAVYFEEVRRHLGTDAAHCYGGFLAVLSAWCEEHHVPYQGVNVKTIKRFIT 109

Query: 117 GVGHGDKKQIHMMLKMLMPESFFKGKDAADALAI 150
           G G+  K ++   +K        +  +  DALA+
Sbjct: 110 GKGNASKSEVIEAVKK--KGVSPRDDNEGDALAL 141


>gi|209884694|ref|YP_002288551.1| holliday junction resolvasome, endonuclease subunit [Oligotropha
           carboxidovorans OM5]
 gi|209872890|gb|ACI92686.1| holliday junction resolvasome, endonuclease subunit [Oligotropha
           carboxidovorans OM5]
          Length = 174

 Score = 46.9 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 38/106 (35%), Gaps = 13/106 (12%)

Query: 56  LTDVIKNWRPEEAAVEQVFVNKD--AVATLKLGQARAIAIL---SPALARIPVSEYAPNT 110
           L   ++  +P     E   + K        KL     +A+L   +     I V E   +T
Sbjct: 53  LKGQLEGLKPALVIFEAPILPKKTTPTTARKL---MGLAMLTEMAARHRGITVREGRAST 109

Query: 111 IKKAVIGVGHGDKKQIHMMLKMLMPESFFKGKDAADALAI---AVC 153
           +KK   G G   K     + +        +  D ADA A+   AVC
Sbjct: 110 VKKHFTGNGWAKKADTMAIARRYG--WAVRTDDEADACALWAYAVC 153


>gi|48697447|ref|YP_024832.1| Pas46 [Actinoplanes phage phiAsp2]
 gi|47679665|gb|AAT36794.1| Pas46 [Actinoplanes phage phiAsp2]
          Length = 164

 Score = 46.9 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 56/143 (39%), Gaps = 12/143 (8%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++++G+D  + +TG  +        C+     I     +    RL ++ + + + +    
Sbjct: 1   MKVVGLDLSMTQTG--VCHTVEGAACWH---VIKPKRVKD--ARLPEIVDQVLEYVT--G 51

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
            + A +E +    +       G  + I  L    A IP  +  P+++KK   G G   K 
Sbjct: 52  ADLALLEML--PPNMKGAGITGMVQGIVRLELQRAGIPYGDIGPSSLKKYATGKGGASKT 109

Query: 125 QIHMMLKMLMPESFFKGKDAADA 147
           ++ +   +    +     +A DA
Sbjct: 110 EMALA-ALTRGGAEISNDNACDA 131


>gi|163869078|ref|YP_001610312.1| hypothetical protein Btr_2296 [Bartonella tribocorum CIP 105476]
 gi|161018759|emb|CAK02317.1| phage-related conserved hypothetical protein [Bartonella tribocorum
           CIP 105476]
          Length = 155

 Score = 46.5 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 53/154 (34%), Gaps = 24/154 (15%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR-- 64
           I+  D G  + GW I    G+    + SGT+    R+         Y      +   +  
Sbjct: 5   ILCFDLG-TKMGWAI--RGGNG--HIFSGTMSLQPRRFEGG--GMRYLRFKQWLNEIKHT 57

Query: 65  ---PEEAAVEQVFVNKDAVATLKLGQARAIAILSPAL----ARIPVSEYAPNTIKKAVIG 117
               +    E+V   +               + +         IP      +TIKKA  G
Sbjct: 58  AGDIDAVYFEEV--RRHVGT--DAAHVYGGLLAALTAWCEDHEIPYEGIPVSTIKKATTG 113

Query: 118 VGHGDKKQIHMMLKMLMPESFFKGKD-AADALAI 150
            G+  K++   M++ +  +      D  ADALAI
Sbjct: 114 KGNASKEE---MIEAMRSKGHVPCDDNEADALAI 144


>gi|163868176|ref|YP_001609384.1| hypothetical protein Btr_0993 [Bartonella tribocorum CIP 105476]
 gi|161017831|emb|CAK01389.1| phage-related conserved hypothetical protein [Bartonella tribocorum
           CIP 105476]
          Length = 158

 Score = 46.5 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 37/104 (35%), Gaps = 9/104 (8%)

Query: 53  YEGLTDVIKNWRPEEAAVEQVFVNKDAVATLK-LGQARAIAILS----PALARIPVSEYA 107
           Y      +   +     ++ V+  +                + +        +IP     
Sbjct: 44  YLRFKQWLTEIKHTAGGIDAVYFEEVRRHVGTDAAHVYGGLLATLTAWCEHHQIPYEGIP 103

Query: 108 PNTIKKAVIGVGHGDKKQIHMMLKMLMPESFFKGKD-AADALAI 150
            +TIKKA  G G+  K++   M++ +  +      D  ADALAI
Sbjct: 104 VSTIKKATTGKGNASKEE---MIEAMCIKGHKPCDDNEADALAI 144


>gi|49475479|ref|YP_033520.1| hypothetical protein BH06960 [Bartonella henselae str. Houston-1]
 gi|49238285|emb|CAF27499.1| hypothetical genomic island protein [Bartonella henselae str.
           Houston-1]
          Length = 159

 Score = 46.5 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/147 (24%), Positives = 57/147 (38%), Gaps = 10/147 (6%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVR--QSLAFRLCQLYEGLTDV-IKNW 63
           I+ +D G  +TGW I    G     + SG +    R  +    R  +  + LT++ +   
Sbjct: 8   ILCLDLGS-KTGWAICGADG----HIFSGVMNFQPRRFEGGGMRYLRFKQWLTEMKMTAR 62

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           R +    E+V  +    A    G   A         +IP       TIKK   G G+  K
Sbjct: 63  RIDAVYFEEVRRHVGTDAAHVYGGLLATLTAWCEHHQIPYEGIPVGTIKKETTGKGNASK 122

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAI 150
           +++   +         K  + ADALAI
Sbjct: 123 EEMIKAVCA--KGHAPKDDNEADALAI 147


>gi|240850489|ref|YP_002971888.1| phage related protein [Bartonella grahamii as4aup]
 gi|240267612|gb|ACS51200.1| phage related protein [Bartonella grahamii as4aup]
          Length = 160

 Score = 46.5 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 54/160 (33%), Gaps = 36/160 (22%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFR---------------LCQ 51
           I+ +D G  +TGW I    G           ++   +    R               L +
Sbjct: 8   ILCLDLG-TKTGWAICGADGH----------ITSDTEDFQSRRFEGGGMRYLRFKRWLTE 56

Query: 52  LYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTI 111
           L   + ++      +    E+V  +    A+   G   A         +IP       TI
Sbjct: 57  LKRSVDEI------DAVYFEEVRRHVGTDASHIYGGFLATLTAWCEHHQIPYEGIPVGTI 110

Query: 112 KKAVIGVGHGDKKQIHMMLKMLMPESFFKGKD-AADALAI 150
           KKA  G G+  K     M+K +  +      D  ADALAI
Sbjct: 111 KKATTGKGNASKV---KMIKAICAKGHVPKDDNEADALAI 147


>gi|319408868|emb|CBI82525.1| conserved hypothetical protein [Bartonella schoenbuchensis R1]
          Length = 155

 Score = 46.5 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/152 (24%), Positives = 61/152 (40%), Gaps = 12/152 (7%)

Query: 3   KSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTI--VSCVRQSLAFRLCQLYEGLTD-- 58
            S+ I+ +D G  +TGW I    G     ++SGT+   +   +    R  +  + LT+  
Sbjct: 4   NSLTILCLDLG-TKTGWAISSEDGT----IASGTVNFSTRRFEGGGMRYLRFKQWLTETK 58

Query: 59  VIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGV 118
            I     +    E+V  +    A    G   AI        + P       TIKKA+ G 
Sbjct: 59  AILEH-IDAVYFEEVRCHIGTDAAHVYGGLLAILTSWCEHHQTPYQGIPIATIKKAMTGR 117

Query: 119 GHGDKKQIHMMLKMLMPESFFKGKDAADALAI 150
           G+  K ++   ++        +  + ADALAI
Sbjct: 118 GNAPKTEMIKAVRA--KGHEPEDDNEADALAI 147


>gi|152994801|ref|YP_001339636.1| RNA-binding S1 domain-containing protein [Marinomonas sp. MWYL1]
 gi|150835725|gb|ABR69701.1| RNA binding S1 domain protein [Marinomonas sp. MWYL1]
          Length = 720

 Score = 46.1 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 9/67 (13%)

Query: 6   RIIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           R++G+DPG R  G    ++D  G     +  G I     Q+   R  +    L+ +I+  
Sbjct: 325 RVLGVDPGFRN-GVKLAVIDEQG---SLLDHGVIYPHGPQN---RTQEASTMLSQLIRKH 377

Query: 64  RPEEAAV 70
                A+
Sbjct: 378 NIGWVAI 384


>gi|88607505|ref|YP_505808.1| hypothetical protein APH_1294 [Anaplasma phagocytophilum HZ]
 gi|88598568|gb|ABD44038.1| conserved domain protein [Anaplasma phagocytophilum HZ]
          Length = 76

 Score = 46.1 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 2/54 (3%)

Query: 27 DNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAV 80
           +L  + SGTI +     L  +L  ++  LTD+I+ +    A+   VFVN +  
Sbjct: 10 GSLSLIDSGTICTLSSADLNDKLSYIFSTLTDIIQKFSISVAS--NVFVNLNPR 61


>gi|117926047|ref|YP_866664.1| bacteriophage-related protein [Magnetococcus sp. MC-1]
 gi|117609803|gb|ABK45258.1| putative bacteriophage-related protein [Magnetococcus sp. MC-1]
          Length = 166

 Score = 46.1 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 2/58 (3%)

Query: 96  PALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESFFKGKDAADALAIAVC 153
                +P       +IKK+  G G+  K+Q+   +K L         + +DALA+  C
Sbjct: 103 AEHHEVPYMGVPVGSIKKSAAGKGNASKEQVIHAMKRLGHN--PADDNESDALALLHC 158


>gi|302035480|ref|YP_003795802.1| putative polynucleotidyl transferase [Candidatus Nitrospira
           defluvii]
 gi|300603544|emb|CBK39874.1| putative Polynucleotidyl transferase (phage related) [Candidatus
           Nitrospira defluvii]
          Length = 154

 Score = 46.1 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 47/154 (30%), Gaps = 24/154 (15%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSL---------AFRLCQLYEGLT 57
           I+ +D G   TGW         L  +  GT  +                 R  +    L 
Sbjct: 5   ILALDLG-THTGWA--------LQHLD-GT--TTSGTEHFKPQRFEGGGMRFLRFKRWLN 52

Query: 58  DVIKN-WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVI 116
           +++           E+V  +    A    G              IP       TIKK   
Sbjct: 53  ELLSTSNHINAVFFEEVRRHAGVDAAHAYGGFMGHLTAWCEHHNIPYQGVPVGTIKKHAT 112

Query: 117 GVGHGDKKQIHMMLKMLMPESFFKGKDAADALAI 150
           G G+  K+++   ++           + ADALA+
Sbjct: 113 GKGNAGKEEMIASVRK--RGHAPADDNEADALAL 144


>gi|294674019|ref|YP_003574635.1| Csn1 family CRISPR-associated protein [Prevotella ruminicola 23]
 gi|294472455|gb|ADE81844.1| CRISPR-associated protein, Csn1 family [Prevotella ruminicola 23]
          Length = 1204

 Score = 46.1 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/31 (45%), Positives = 17/31 (54%)

Query: 6  RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGT 36
          RI+GID G    GW IVD   +    V+ GT
Sbjct: 3  RILGIDTGTNSLGWAIVDKDENQYHLVAKGT 33


>gi|297528626|ref|YP_003669901.1| hypothetical protein GC56T3_0256 [Geobacillus sp. C56-T3]
 gi|297251878|gb|ADI25324.1| hypothetical protein GC56T3_0256 [Geobacillus sp. C56-T3]
          Length = 166

 Score = 45.7 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 49/126 (38%), Gaps = 11/126 (8%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           MR   R +GIDP LR TG+  +   G     + +  I          R+ +L + + D +
Sbjct: 1   MRFE-RFVGIDPSLR-TGFVALSPLG---EVIEAKEIEKEGDD--PARMSELIQAVVDSV 53

Query: 61  KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
                +  A+E       +     LG       +      I   + AP+ +KK     G+
Sbjct: 54  --HDTDFVAIEG--FGYASQRGFLLGGIGWGMRMELYRRGIQYIDVAPSLVKKFAGAKGN 109

Query: 121 GDKKQI 126
            +K+++
Sbjct: 110 ANKEKV 115


>gi|262067810|ref|ZP_06027422.1| hypothetical protein FUSPEROL_02093 [Fusobacterium periodonticum
           ATCC 33693]
 gi|291378534|gb|EFE86052.1| hypothetical protein FUSPEROL_02093 [Fusobacterium periodonticum
           ATCC 33693]
          Length = 177

 Score = 45.7 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 61/156 (39%), Gaps = 24/156 (15%)

Query: 10  IDPGLRRT--GWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEE 67
           ID  L +T  G  + D   +   F++S       + +   R  ++   + ++I  +RP +
Sbjct: 22  ID--LSKTCPGISVYDHEKNYFLFLNS--FKGNNKLANHERNLEILYWILEIISKYRPYK 77

Query: 68  AAVEQVFVNKD-AVATLKLGQARAIAILSPALARIPVSEYAPN------TIKKAVIGVGH 120
           A +E  F++     +   L +   I         + + E +P        IK        
Sbjct: 78  AIIESPFISTFTIKSVGPLMKLHGIIDHFLFENGLEIYEISPTSSRSYLKIKPN------ 131

Query: 121 GDKKQIHMMLKM---LMPESFFKGK-DAADALAIAV 152
             K++    +K    ++  + FK   D +DA+ +A+
Sbjct: 132 -TKEEAFKFVKSKYPILDLTTFKKDNDKSDAVILAL 166


>gi|319405071|emb|CBI78678.1| conserved hypothetical protein [Bartonella sp. AR 15-3]
          Length = 159

 Score = 45.7 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 39/103 (37%), Gaps = 10/103 (9%)

Query: 49  LCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAP 108
           L ++   +  +      +    E+V  +    A    G   A         +IP      
Sbjct: 54  LMEINRSVDRI------DAVYFEEVRRHIGTDAAHVYGGFLATLTAWCEHHQIPYEGIPV 107

Query: 109 NTIKKAVIGVGHGDKKQIHMMLKMLMPESFFKGKD-AADALAI 150
            TIKKA  G G+  K++   M++ +  +      D  ADALAI
Sbjct: 108 GTIKKATTGKGNASKEE---MIEAMCSKGHAPCDDNEADALAI 147


>gi|9630627|ref|NP_047175.1| Holliday junction endonuclease [Lactococcus phage bIL170]
 gi|3282321|gb|AAC27240.1| Holliday junction endonuclease [Lactococcus phage bIL170]
          Length = 160

 Score = 45.7 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 59/156 (37%), Gaps = 18/156 (11%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLC--FVSSGTIVSCVRQSLAFRLCQLYEGLTD 58
           M K+   + ID     TG+       + L   +V  G+I     +    R   + +G+T+
Sbjct: 1   MSKA---LAIDFSTSNTGYAF----RNPLTNEYV-VGSIAGGKSKDPLERAKIIADGITE 52

Query: 59  VIKNWR-PEEAA-VEQVFVNKDAVATLKLGQARAIAI-LSPALARIPVSEYAPNTIKKA- 114
           VI+++   +    +E+  +   +   + L +A    + +      I   + + + +  + 
Sbjct: 53  VIEHYNLFDYFIYIEEPIITFKSKGNISLIRANGSFLGVMRNRHNIGYVDISNS-MWCSY 111

Query: 115 --VIGVGHGDKKQIHMMLKMLMPESFFK-GKDAADA 147
             + G     K+Q   +L         K   D ADA
Sbjct: 112 HLIKGKSKARKEQSIEILNSYNIVPEDKVNDDMADA 147


>gi|319406618|emb|CBI80260.1| conserved hypothetical protein [Bartonella sp. 1-1C]
          Length = 159

 Score = 45.7 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/147 (23%), Positives = 56/147 (38%), Gaps = 10/147 (6%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVR--QSLAFRLCQLYEGLTDV-IKNW 63
           I+  D G  +TGW I    G     + SG +    R  +    R  +  + L ++ +   
Sbjct: 8   ILCFDLG-TKTGWAICGADG----HIISGVMNFQPRRFEGGGMRYLRFKQWLNEIKLTAG 62

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           R +    E+V  +    A    G   A         +IP      +TIKK   G G+  K
Sbjct: 63  RIDAVYFEEVRRHIGTDAAHVYGGLLATLTAWCEYYQIPYEGIPVSTIKKETTGKGNASK 122

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAI 150
           +++   +         K  + ADALAI
Sbjct: 123 EEMIKAVCA--KGHAPKDDNEADALAI 147


>gi|196249492|ref|ZP_03148189.1| hypothetical protein G11MC16DRAFT_1946 [Geobacillus sp. G11MC16]
 gi|196210786|gb|EDY05548.1| hypothetical protein G11MC16DRAFT_1946 [Geobacillus sp. G11MC16]
          Length = 222

 Score = 45.7 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 48/121 (39%), Gaps = 10/121 (8%)

Query: 6   RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           R +GIDP LR TG+  +   G     + +  I          R+ +L + + D +     
Sbjct: 60  RFVGIDPSLR-TGFVALSPFG---EVIEAKEIEREGDD--PARMSELIQAVVDSV--HDT 111

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
           +  A+E       +     LG       +      IP  + AP+ +KK     G+ +K++
Sbjct: 112 DFVAIEG--FGYASQRGFLLGGIGWGMRMELYRRGIPYIDVAPSLLKKFAGAKGNANKEK 169

Query: 126 I 126
           +
Sbjct: 170 V 170


>gi|115304265|ref|YP_762566.1| putative holliday junction endonuclease [Lactococcus phage P008]
 gi|68449744|gb|AAY97857.1| putative holliday junction endonuclease [Lactococcus phage P008]
          Length = 160

 Score = 45.7 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 63/160 (39%), Gaps = 26/160 (16%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLC--FVSSGTIVSCVRQSLAFRLCQLYEGLTD 58
           M K+   + ID     TG+       + L   +V  G+I     +    R   + +G+T+
Sbjct: 1   MSKA---LAIDFSTSNTGYAF----RNPLTNEYV-VGSIAGGKSKDPLERAKIIADGITE 52

Query: 59  VIKNWR-PEEAA-VEQVFVNKDAVATLKLGQARAIAI-LSPALARIPVSEYAPNT----- 110
           VI+++   +    +E+  +   +   + L +A    + +      I   + + +      
Sbjct: 53  VIEHYNLFDYFIYIEEPIITFKSKGNISLIRANGSFLGVMRNRHNIGYVDISNSMWCGYH 112

Query: 111 -IKKAVIGVGHGDKKQIHMMLK--MLMPESFFKGKDAADA 147
            IK    G     K+Q   +LK   ++P++     D ADA
Sbjct: 113 LIK----GKSKARKEQSIEILKSYNIVPDNDI-NDDQADA 147


>gi|285019152|ref|YP_003376863.1| bacteriophage-related protein [Xanthomonas albilineans GPE PC73]
 gi|283474370|emb|CBA16871.1| putative bacteriophage-related protein [Xanthomonas albilineans]
          Length = 154

 Score = 45.7 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/151 (22%), Positives = 49/151 (32%), Gaps = 18/151 (11%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSL-----AFRLCQLYEGLTDVIK 61
           I+ +D G R TGW +    G     ++SG   +             R  +    L +V+ 
Sbjct: 5   ILALDLGTR-TGWALQHSDGT----ITSG---TEPFTPQRFEGGGMRFLRFKRWLNEVLS 56

Query: 62  NWRP-EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
              P      E+V  +    A    G             +IP       TIKK   G G+
Sbjct: 57  TANPIHTVYFEEVRRHAGVDAAHAYGGFMGHLTAWCEHHQIPYQGVPVGTIKKHATGKGN 116

Query: 121 GDKKQIHMMLKMLMPESFFKGKD-AADALAI 150
             K     M+            D  ADALA+
Sbjct: 117 AGKD---DMIASARRRGHTPIDDNQADALAL 144


>gi|239502690|ref|ZP_04662000.1| hypothetical protein AbauAB_10287 [Acinetobacter baumannii AB900]
          Length = 200

 Score = 45.7 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 52/140 (37%), Gaps = 20/140 (14%)

Query: 5   IRI--IGIDPGLRRTGWGI--VDVAGDN--LCFVSSGTIVSCVRQSLAF----------R 48
           ++I  IGIDP LR  G  +  +D++ D+            +   +              R
Sbjct: 1   MKIKAIGIDPSLRNFGLVVAEIDISNDDYPFEIKDMMLAQTESSKETKKTVRKNSDDLRR 60

Query: 49  LCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAP 108
              L++G+  +I   +   A VE    ++ A A    G    I    P    +P+ +  P
Sbjct: 61  AKILHDGMMHMINKHKVTFAFVEIPTGSQTARAMSSYGICIGILSACP----VPMIQLTP 116

Query: 109 NTIKKAVIGVGHGDKKQIHM 128
             +K A  G+    K ++  
Sbjct: 117 FEVKLAGTGIKTATKHEMIE 136


>gi|255985786|gb|ACU46969.1| putative Holliday junction endonuclease [Lactococcus phage CB19]
 gi|255985838|gb|ACU47020.1| putative Holliday junction endonuclease [Lactococcus phage CB20]
          Length = 159

 Score = 45.3 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 62/160 (38%), Gaps = 26/160 (16%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLC--FVSSGTIVSCVRQSLAFRLCQLYEGLTD 58
           M K+   + ID     TG+       + L   +V  G+I     +    R  Q+ +G+T+
Sbjct: 1   MSKA---LAIDFSTSNTGYAF----RNPLTNEYV-VGSIAGGKSKDPLERAKQIADGITE 52

Query: 59  VIKNWR-PEEAA-VEQVFVNKDAVATLKLGQARAIAI-LSPALARIPVSEYAPNT----- 110
           VI+++   +    +E+  +   +   + L +A    + +      I   +   +      
Sbjct: 53  VIEHYNLFDYFIYIEEPIITFKSKGNISLIRANGSFLGVMRNRHNIGYVDIPNSKWCGYH 112

Query: 111 -IKKAVIGVGHGDKKQIHMMLK--MLMPESFFKGKDAADA 147
            IK    G     K Q   +LK   ++P++     D ADA
Sbjct: 113 LIK----GKSKARKVQSIEILKSYNIVPDNDI-NDDQADA 147


>gi|225630342|ref|YP_002727133.1| Putative Holliday junction resolvasome, endonuclease subunit
           [Wolbachia sp. wRi]
 gi|225630736|ref|YP_002727527.1| Holliday junction resolvasome, endonuclease subunit [Wolbachia sp.
           wRi]
 gi|225592323|gb|ACN95342.1| Putative Holliday junction resolvasome, endonuclease subunit
           [Wolbachia sp. wRi]
 gi|225592717|gb|ACN95736.1| Holliday junction resolvasome, endonuclease subunit [Wolbachia sp.
           wRi]
          Length = 151

 Score = 45.3 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 34/152 (22%), Positives = 61/152 (40%), Gaps = 21/152 (13%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRL---CQLYEGLTDVIK 61
           + I+ +D G ++TGW I          ++ G I S  +     R       +    + + 
Sbjct: 1   MSILTLDLG-KQTGWAI----------LTDGIIESGSKSFHGSRFSGGGMCFLNFCNWLN 49

Query: 62  NWRPEEAAV--EQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVG 119
           + + + +AV  E+V  +    A    G   A+         IP       TIK+ + G G
Sbjct: 50  SLK-DISAVYFEEVRRHLGTDAAHCYGGFLAVLSAWCEENNIPYQGVNVKTIKRFIAGKG 108

Query: 120 HGDKKQIHMMLKMLMPESFFKGKD-AADALAI 150
           +  K ++   ++    +SF    D  ADALA+
Sbjct: 109 NASKSEVIEAIR---EKSFSPRDDNEADALAL 137


>gi|220926080|ref|YP_002501382.1| putative bacteriophage-like protein [Methylobacterium nodulans ORS
           2060]
 gi|219950687|gb|ACL61079.1| putative bacteriophage-related protein [Methylobacterium nodulans
           ORS 2060]
          Length = 175

 Score = 44.9 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 38/167 (22%), Positives = 61/167 (36%), Gaps = 14/167 (8%)

Query: 5   IR-IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEG-LTDVIKN 62
           +R I+ +D  +  TGW +    GD     + G        +   +L   ++  L+  I  
Sbjct: 1   MRKILALDLSVASTGWALGSPDGDP----AFGHYALPSTGNDIGKLLAAFQDWLSLKIAG 56

Query: 63  WRPEEAAVEQVFVNKD---AVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVG 119
                   E   +++     +   KL     +  L    A I   E    T KK   G G
Sbjct: 57  EDIALCVFEAPILSRGKTHVLTARKLMGLAGVTELICHRAAIRCVEEHLQTNKKRFAGHG 116

Query: 120 HGDKKQIHMMLKMLMPESFFKGKDAADALAI---AVCHAYHANSGYY 163
           H DK  +  + +    +      D ADALA+    VC    A++G Y
Sbjct: 117 HADKHTMMHVARRYGWDVT--RDDEADALALWVGGVCTYAKAHAGRY 161


>gi|194303204|ref|YP_002014618.1| gp7 [Mycobacterium phage Phaedrus]
 gi|194150936|gb|ACF33971.1| gp7 [Mycobacterium phage Phaedrus]
          Length = 156

 Score = 44.9 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/113 (17%), Positives = 38/113 (33%), Gaps = 5/113 (4%)

Query: 41  VRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPA-LA 99
              +++ R+ ++ + +   +     +   +E          T            +     
Sbjct: 19  SYAAMSRRIEKIADTVRAAMD--GCDLIVIEGPSFGSKGQHTHSRDWLWGKIFDAARVNW 76

Query: 100 RIPVSEYAPNTIKKAVIGVGHGDKKQI-HMMLKMLMPESFFKGKDAADALAIA 151
            IPV    P+   K   G G+  K  +    +K   P+    G D ADAL +A
Sbjct: 77  GIPVLVVTPSQRMKYATGKGNAQKDAVLAAAIKR-WPDVEIDGNDQADALILA 128


>gi|319406622|emb|CBI80263.1| conserved hypothetical protein [Bartonella sp. 1-1C]
          Length = 159

 Score = 44.6 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 37/148 (25%), Positives = 58/148 (39%), Gaps = 12/148 (8%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVR--QSLAFRLCQLYEGLTDV-IKNW 63
           I+  D G  +TGW I    G     + SG +    R  +    R  +  + L ++ +   
Sbjct: 8   ILCFDLG-TKTGWAICGADG----HIISGVMNFQPRRFEGGGMRYLRFKQWLNEIKLTAG 62

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           R +    E+V  +    A    G   A         +IP      +TIKK   G G+  K
Sbjct: 63  RIDAVYFEEVRRHIGTDAAHVYGGLLATLTAWCEYYQIPYEGIPVSTIKKETTGKGNASK 122

Query: 124 KQIHMMLKMLMPESFFKGKD-AADALAI 150
           ++   M+K +  +      D  ADALAI
Sbjct: 123 EE---MIKAVCAKGHAPCDDNEADALAI 147


>gi|302390897|ref|YP_003826717.1| Tex-like protein [Acetohalobium arabaticum DSM 5501]
 gi|302202974|gb|ADL11652.1| Tex-like protein [Acetohalobium arabaticum DSM 5501]
          Length = 718

 Score = 44.6 bits (105), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 9/67 (13%)

Query: 6   RIIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           R++GIDPG R TG    +VD  G+    +++  I          ++ +  E L ++I  +
Sbjct: 318 RVLGIDPGFR-TGSKVAVVDEIGN---LLATAAIYPH---PPQKKVSEAKEQLEELITEY 370

Query: 64  RPEEAAV 70
             +  A+
Sbjct: 371 NVDLIAI 377


>gi|152982142|ref|YP_001354387.1| bacteriophage-related protein [Janthinobacterium sp. Marseille]
 gi|151282219|gb|ABR90629.1| bacteriophage-related protein [Janthinobacterium sp. Marseille]
          Length = 158

 Score = 44.6 bits (105), Expect = 0.005,   Method: Composition-based stats.
 Identities = 32/149 (21%), Positives = 49/149 (32%), Gaps = 14/149 (9%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSL---AFRLCQLYEGLTDVIKNW 63
           I+ +D G   TGW +  +       ++SGT      Q       R  +    L +++   
Sbjct: 9   ILALDLG-THTGWALHQLD----STITSGT-EHFKPQRFEGGGMRFLRFKRWLAELLTTS 62

Query: 64  -RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
                   E+V  +    A    G              IP       TIKK   G G+  
Sbjct: 63  GHINAVYFEEVRRHAGVDAAHAYGGFMGHLTAWCEHHNIPYQGVPVGTIKKHATGKGNAG 122

Query: 123 KKQIHMMLKMLMPESFFKGKD-AADALAI 150
           K +   M+  +         D  ADALA+
Sbjct: 123 KDE---MIASVQLRGHVPCDDNEADALAL 148


>gi|282599459|ref|YP_003358349.1| N4 gp46-like protein [Pseudomonas phage LUZ7]
 gi|259048558|emb|CAZ66208.1| N4 gp46-like protein [Pseudomonas phage LUZ7]
          Length = 184

 Score = 44.6 bits (105), Expect = 0.005,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 58/176 (32%), Gaps = 34/176 (19%)

Query: 1   MRKSIRIIGIDPGLRRTGWGI----VDVAGDNLCFVSSGTIVSCVRQSLAFR-----LCQ 51
           M K I ++G+DP L    WGI    +D +   + F     I +   +    R     L +
Sbjct: 1   MPK-INVLGMDPSLSN--WGIACGNLDTSTGLIEFKHVEVIQTSKSKDKQIRVNSADLLR 57

Query: 52  LYEGLTDVIKNWRPEEAAV--EQVFVNKDAVATLKLGQARAIAILSPALA-RIPVSEYAP 108
           + E + + +    P   A+  E    ++ A A    G      +L+   A   P      
Sbjct: 58  V-EPIAERLIELAPHAKAIFVEVPVGSQSADAMKSYGVCIG--LLAYMRALGYPFFPVTA 114

Query: 109 NTIKKAVIGVGHGDKKQIHMML-------------KMLMPESFFKGKDAADALAIA 151
            T+K          K     M+             +        K +  ADA+A A
Sbjct: 115 ATLKVHACNSATASK---QEMIEWATKKYPDLNWPRQNGRVVANKSEHIADAIAAA 167


>gi|117926194|ref|YP_866811.1| hypothetical protein Mmc1_2914 [Magnetococcus sp. MC-1]
 gi|117609950|gb|ABK45405.1| conserved hypothetical protein [Magnetococcus sp. MC-1]
          Length = 168

 Score = 44.2 bits (104), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 7/55 (12%)

Query: 99  ARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESFFKGKDAADALAIAVC 153
             +PV      TIKK   G G+  K Q+   +K L         + +DALA+  C
Sbjct: 113 QGVPVG-----TIKKHATGKGNASKAQVIHAMKRLGHN--PADDNESDALALLHC 160


>gi|117925885|ref|YP_866502.1| hypothetical protein Mmc1_2600 [Magnetococcus sp. MC-1]
 gi|117609641|gb|ABK45096.1| conserved hypothetical protein [Magnetococcus sp. MC-1]
          Length = 166

 Score = 44.2 bits (104), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 29/85 (34%), Gaps = 6/85 (7%)

Query: 73  VFVNKDAVATLKLGQARAIAILS----PALARIPVSEYAPNTIKKAVIGVGHGDKKQIHM 128
           +F      + +         +         + +P       TIKK   G G+  K Q+  
Sbjct: 76  LFEEVRRHSGVGASHVYGGFLAHLTAWAESSEVPYQGVPVGTIKKHATGKGNASKAQVIH 135

Query: 129 MLKMLMPESFFKGKDAADALAIAVC 153
            +K L         + +DALA+  C
Sbjct: 136 AMKRLGHN--PADDNESDALALLHC 158


>gi|194097567|ref|YP_002004041.1| hypothetical protein bIBB29_gp53 [Lactococcus phage bIBB29]
 gi|166202303|gb|ABY84572.1| unknown [Lactococcus phage bIBB29]
          Length = 160

 Score = 44.2 bits (104), Expect = 0.006,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 59/159 (37%), Gaps = 24/159 (15%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLC--FVSSGTIVSCVRQSLAFRLCQLYEGLTD 58
           M K+   + ID     TG+       + L   +V  G+I     +    R   + +G+T+
Sbjct: 1   MSKA---LAIDFSTSNTGYAF----RNPLTNEYV-VGSIAGGKSKDPLERAKIIADGITE 52

Query: 59  VIKNWR-PEEAA-VEQVFVNKDAVATLKLGQARAIAI-LSPALARIPVSEYAPNT----- 110
           +I+++   +    +E+  +   +   + L +A    + +      I   + + +      
Sbjct: 53  IIEHYNLFDYFIYIEEPIITFKSKGNISLIRANGSFLGVMRNRHNIGYVDVSNSMWCGYH 112

Query: 111 -IKKAVIGVGHGDKKQIHMMLKMLMPESFFK-GKDAADA 147
            IK    G     K+Q   +L+        K   D ADA
Sbjct: 113 LIK----GKSKARKEQSIDILESYNIVPKDKINDDMADA 147


>gi|42520153|ref|NP_966068.1| hypothetical protein WD0262 [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|42409890|gb|AAS14002.1| conserved hypothetical protein, interruption-C [Wolbachia
           endosymbiont of Drosophila melanogaster]
          Length = 108

 Score = 44.2 bits (104), Expect = 0.006,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 4/56 (7%)

Query: 96  PALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESFFKGKD-AADALAI 150
                IP       TIK+ + G G+  K ++   +K    + F    D   DALA+
Sbjct: 39  CEENNIPYQGVPVKTIKRFITGKGNASKSEVIEAVK---GKGFIPQDDNEGDALAL 91


>gi|251795620|ref|YP_003010351.1| hypothetical protein Pjdr2_1596 [Paenibacillus sp. JDR-2]
 gi|247543246|gb|ACT00265.1| hypothetical protein Pjdr2_1596 [Paenibacillus sp. JDR-2]
          Length = 190

 Score = 44.2 bits (104), Expect = 0.006,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 53/162 (32%), Gaps = 22/162 (13%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSS-GTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +R +GIDP   +TG   ++  GD +  V   G   +        +L  L   L  +I+  
Sbjct: 2   VRFVGIDPA-TKTGVVALNERGDVVLEVELKGAGKAEKGGITIAQLVDLENQLYQIIE-- 58

Query: 64  RP-EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKK--AVIG-VG 119
            P +E  +EQ          +  G              +   E  P   KK   V G  G
Sbjct: 59  -PGDETVIEQ--AAAGTQKGITTGMVHGGLRSIIHRKGLVYHEINPLQTKKYVGVTGWKG 115

Query: 120 HG----------DKKQIHMMLKMLMPESFFKGKDAADALAIA 151
                        K+ +   ++ L      K  +  DA  IA
Sbjct: 116 EAGSKVRLKDKEKKEAVGKAVQELFG-YRHKSDNVVDAYIIA 156


>gi|315122904|ref|YP_004063393.1| hypothetical protein CKC_05800 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313496306|gb|ADR52905.1| hypothetical protein CKC_05800 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 145

 Score = 44.2 bits (104), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 6/57 (10%)

Query: 96  PALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESFFKGKD--AADALAI 150
               +IP S     TIKK + G G+ +K  + + +K L     FK  D   ADALA+
Sbjct: 85  CERNKIPYSGIPVQTIKKHITGKGNANKALVILAVKGL----GFKPIDDNEADALAL 137


>gi|190570855|ref|YP_001975213.1| putative phage related protein [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|190357127|emb|CAQ54538.1| putative phage related protein [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
          Length = 154

 Score = 44.2 bits (104), Expect = 0.007,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 55/150 (36%), Gaps = 17/150 (11%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRL---CQLYEGLTDVIK 61
           + I+ +D G ++TGW I          ++ G I S        R       +    + + 
Sbjct: 1   MSILTLDLG-KQTGWAI----------LTDGVIESGSESFHTSRFSGGGMCFLNFRNWLN 49

Query: 62  NWR-PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
           + +      +E+V  +    A    G   A+         +P       TIK+ + G G+
Sbjct: 50  SLKEISVVYLEEVRRHLGTDAAHCYGGFLAVLSAWCEEHHVPYKGVNVKTIKRFIAGNGN 109

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAI 150
             K ++   +K        +  + +DALA+
Sbjct: 110 ASKSEVIEAVKE--KGFLPRDDNESDALAL 137


>gi|303237415|ref|ZP_07323981.1| putative CRISPR-associated protein, Csn1 family [Prevotella
          disiens FB035-09AN]
 gi|302482365|gb|EFL45394.1| putative CRISPR-associated protein, Csn1 family [Prevotella
          disiens FB035-09AN]
          Length = 795

 Score = 43.8 bits (103), Expect = 0.008,   Method: Composition-based stats.
 Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 1/31 (3%)

Query: 1  MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCF 31
          M K  RI+G+DPG    GW ++D       +
Sbjct: 1  MEKQ-RILGLDPGTNSLGWAVLDFDNSKQEY 30


>gi|134298988|ref|YP_001112484.1| RNA-binding S1 domain-containing protein [Desulfotomaculum reducens
           MI-1]
 gi|134051688|gb|ABO49659.1| RNA binding S1 domain protein [Desulfotomaculum reducens MI-1]
          Length = 724

 Score = 43.4 bits (102), Expect = 0.010,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 28/66 (42%), Gaps = 9/66 (13%)

Query: 7   IIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++G+DP  R TG  W +VD  G     +  G I          ++ +    ++ ++  + 
Sbjct: 321 VLGLDPAYR-TGCKWAVVDNTG---KLLEVGVIYP---TPPQKKIQEARAEISRLVDKYE 373

Query: 65  PEEAAV 70
            +  A+
Sbjct: 374 IDIIAI 379


>gi|213019358|ref|ZP_03335164.1| putative phage related protein [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|212994780|gb|EEB55422.1| putative phage related protein [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 168

 Score = 43.4 bits (102), Expect = 0.011,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 54/151 (35%), Gaps = 17/151 (11%)

Query: 4   SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRL---CQLYEGLTDVI 60
            + I+ +D G ++TGW I          ++ G I S        R       +    + +
Sbjct: 14  EMSILTLDLG-KQTGWAI----------LTDGVIESGSESFHTSRFSGGGMCFLNFRNWL 62

Query: 61  KNWR-PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVG 119
            + +       E+V  +    A    G   A+         +P       TIK+ + G G
Sbjct: 63  NSLKEISVVYFEEVRRHLGTDAAHCYGGFLAVLSAWCEEHHVPYKGVNVKTIKRFIAGNG 122

Query: 120 HGDKKQIHMMLKMLMPESFFKGKDAADALAI 150
           +  K ++   +K        +  + +DALA+
Sbjct: 123 NASKSEVIEAVKE--KGFLPRDDNESDALAL 151


>gi|326804572|ref|YP_004327443.1| putative uncharacterised protein [Salmonella phage Vi01]
 gi|301795222|emb|CBW37940.1| putative uncharacterised protein [Salmonella phage Vi01]
          Length = 203

 Score = 43.4 bits (102), Expect = 0.012,   Method: Composition-based stats.
 Identities = 18/128 (14%), Positives = 44/128 (34%), Gaps = 14/128 (10%)

Query: 36  TIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVN--KDAVATLKLGQARAIAI 93
            +     +S   R   + +    V+   +P+   +E   +   K++    +  +  ++  
Sbjct: 54  ILRQPKYESPEERFYNISKWAEAVLLTEKPDFITLEGYAMGNSKNSNNICQTAENTSLLK 113

Query: 94  LSPALARIPVSEYAPNTIKKAVIGVGHGDK------------KQIHMMLKMLMPESFFKG 141
            +     +      P+ +KK   G G+ DK             ++  ++ ML  +     
Sbjct: 114 QAMRRNNMEFQIVTPSFVKKHFCGKGNADKLVMIDHFEKLFNVKMRGIMDMLDVKDPKPI 173

Query: 142 KDAADALA 149
            D  D+ A
Sbjct: 174 DDLVDSFA 181


>gi|300689922|ref|YP_003750917.1| bacteriophage-related protein [Ralstonia solanacearum PSI07]
 gi|299076982|emb|CBM09938.1| putative bacteriophage-related protein [Ralstonia solanacearum
           PSI07]
          Length = 154

 Score = 43.4 bits (102), Expect = 0.012,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 49/154 (31%), Gaps = 24/154 (15%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRL---CQLYEGLTDVIKNW 63
           I+ +D G  +TGW         L ++  G+I S  +     R       +      +   
Sbjct: 5   ILALDLG-TKTGWA--------LQYLD-GSIASGTQNFKPQRFEGGGMRFLRFKRWLNGL 54

Query: 64  R-----PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGV 118
           +           E+V  +    A    G              IP       TIKK   G 
Sbjct: 55  KLSCSDINVVYFEEVRRHAGVDAAHIYGGLLGHLSAWCEHHNIPYIGVPVGTIKKHATGK 114

Query: 119 GHGDKKQIHMMLKMLMPESFFKGKD--AADALAI 150
           G+  K +I   +     +   K  D   ADALAI
Sbjct: 115 GNASKDEIIASV----SKRGHKPTDDNEADALAI 144


>gi|190571684|ref|YP_001976042.1| putative phage related protein [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|213019340|ref|ZP_03335147.1| putative phage related protein [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|190357956|emb|CAQ55419.1| putative phage related protein [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|212995449|gb|EEB56090.1| putative phage related protein [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 154

 Score = 43.0 bits (101), Expect = 0.014,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 54/150 (36%), Gaps = 17/150 (11%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRL---CQLYEGLTDVIK 61
           + I+ +D G ++TGW I          ++ G I S        R       +    + + 
Sbjct: 1   MSILTLDLG-KQTGWAI----------LTDGVIESGSESFHTSRFSGGGMCFLNFRNWLN 49

Query: 62  NWR-PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
           + +       E+V  +    A    G   A+         +P       TIK+ + G G+
Sbjct: 50  SLKEISVVYFEEVRRHLGTDAAHCYGGFLAVLSAWCEEHHVPYKGVNVKTIKRFIAGNGN 109

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAI 150
             K ++   +K        +  + +DALA+
Sbjct: 110 ASKSEVIEAVKE--KGFLPRDDNESDALAL 137


>gi|319404454|emb|CBI78057.1| conserved hypothetical protein [Bartonella rochalimae ATCC
           BAA-1498]
          Length = 116

 Score = 43.0 bits (101), Expect = 0.014,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 33/87 (37%), Gaps = 2/87 (2%)

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
           R +    E+V  +    A    G   A         +IP      +TIKK   G G+  K
Sbjct: 31  RIDAVYFEEVRRHIGTDAAHVYGGLLATLTAWCEYYQIPYEGIPVSTIKKETTGKGNASK 90

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAI 150
           +++   +         K  + ADALAI
Sbjct: 91  EEMIKAVCA--KGHAPKDDNEADALAI 115


>gi|117924605|ref|YP_865222.1| hypothetical protein Mmc1_1305 [Magnetococcus sp. MC-1]
 gi|117608361|gb|ABK43816.1| conserved hypothetical protein [Magnetococcus sp. MC-1]
          Length = 166

 Score = 43.0 bits (101), Expect = 0.015,   Method: Composition-based stats.
 Identities = 16/82 (19%), Positives = 28/82 (34%), Gaps = 6/82 (7%)

Query: 73  VFVNKDAVATLKLGQARAIAILS----PALARIPVSEYAPNTIKKAVIGVGHGDKKQIHM 128
           +F      + +         +         + +P       TIKK   G G+  K Q+  
Sbjct: 76  LFEEVRRHSGVGASHVYGGFLAHLTAWAESSEVPYQGVPVGTIKKHATGKGNASKAQVIH 135

Query: 129 MLKMLMPESFFKGKDAADALAI 150
            +K L         + +DALA+
Sbjct: 136 AMKRLGHN--PADDNESDALAL 155


>gi|288573128|ref|ZP_06391485.1| conserved hypothetical protein [Dethiosulfovibrio peptidovorans DSM
           11002]
 gi|288568869|gb|EFC90426.1| conserved hypothetical protein [Dethiosulfovibrio peptidovorans DSM
           11002]
          Length = 153

 Score = 43.0 bits (101), Expect = 0.015,   Method: Composition-based stats.
 Identities = 40/168 (23%), Positives = 66/168 (39%), Gaps = 45/168 (26%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLT--DVIKN 62
           + ++GIDPGL+    G V V GD +  +            +  R  ++ +GL+    +  
Sbjct: 1   MAVVGIDPGLK----GAVAVLGDQVDVID-----------MPTRGKEI-DGLSLAAYLSR 44

Query: 63  WRPEEAAVEQVFVN--KDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVI---- 116
             P  A VE+V     +   +T   G+   + +      +IP  E +P   +KAV+    
Sbjct: 45  VSPGLAVVEKVHSMPKQGVRSTFTFGKGVGVVLGVLQALKIPWVEVSPQAWQKAVLWGVP 104

Query: 117 GVGHGDKKQIHMMLKMLM---------PESFFKG--KDA-ADALAIAV 152
           G G           + L+         P    +G   D  ADALA+A 
Sbjct: 105 GEGKA---------RSLLWARKIFPGVPLETPRGRKLDGRADALALAW 143


>gi|309781006|ref|ZP_07675745.1| holliday junction resolvasome, endonuclease subunit [Ralstonia sp.
           5_7_47FAA]
 gi|330824597|ref|YP_004387900.1| hypothetical protein Alide2_2009 [Alicycliphilus denitrificans
           K601]
 gi|308920309|gb|EFP65967.1| holliday junction resolvasome, endonuclease subunit [Ralstonia sp.
           5_7_47FAA]
 gi|329309969|gb|AEB84384.1| hypothetical protein Alide2_2009 [Alicycliphilus denitrificans
           K601]
          Length = 158

 Score = 42.6 bits (100), Expect = 0.017,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 60/159 (37%), Gaps = 21/159 (13%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVR--QSLAFRLCQLYEGLTDVIKNW- 63
           I+ +D G   TGW +    G     ++SG+     +  +    R  +    L+++ ++  
Sbjct: 5   ILALDLGTT-TGWALRGSDG----HITSGSERFRPQRFEGGGMRFLRFKRWLSEIKQSCD 59

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILS----PALARIPVSEYAPNTIKKAVIGVG 119
             +    E+V   +  V+T     A    + +        +IP       TIKK   G G
Sbjct: 60  GIDCLHFEEV---RRHVST-DAAHAYGGFLATLTAWCEHHQIPYQGVPVGTIKKHATGKG 115

Query: 120 HGDKKQIHMMLKMLMPESFFKGKDAADALAI---AVCHA 155
           +  K+ +   +            + ADALA+   A+ H 
Sbjct: 116 NAGKEDVIASVTA--RGHAPVDDNEADALALLHWAIQHH 152


>gi|190573867|ref|YP_001971712.1| hypothetical protein Smlt1885 [Stenotrophomonas maltophilia K279a]
 gi|190011789|emb|CAQ45409.1| conserved hypothetical protein [Stenotrophomonas maltophilia K279a]
          Length = 158

 Score = 42.6 bits (100), Expect = 0.018,   Method: Composition-based stats.
 Identities = 35/153 (22%), Positives = 57/153 (37%), Gaps = 22/153 (14%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSL---AFRLCQLYEGLTDVIKNW 63
           I+ +D G   TGW +    G     ++SG+  S   Q       R  +    LT++ ++ 
Sbjct: 5   ILALDLGTT-TGWALQGCDG----HITSGS-ESFKPQRFEGGGMRFLRFKRWLTEIKQSC 58

Query: 64  -RPEEAAVEQVFVNKDAVATLKLGQARAIAILS----PALARIPVSEYAPNTIKKAVIGV 118
              +    E+V   +  V+T     A    + +        +IP       TIKK   G 
Sbjct: 59  DGIDCLHFEEV---RRHVST-DAAHAYGGFLATLTAWCEHHQIPYQGVPVGTIKKYATGK 114

Query: 119 GHGDKKQIHMMLKMLMPESFFKGKD-AADALAI 150
           G+  K +   M+            D  ADALA+
Sbjct: 115 GNASKDE---MVASARARGHAPVDDNEADALAL 144


>gi|51894064|ref|YP_076755.1| ribosomal protein S1-like protein [Symbiobacterium thermophilum IAM
           14863]
 gi|51857753|dbj|BAD41911.1| ribosomal protein S1-like RNA-binding domain [Symbiobacterium
           thermophilum IAM 14863]
          Length = 764

 Score = 42.6 bits (100), Expect = 0.019,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 11/71 (15%)

Query: 3   KSIRIIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEG-LTDV 59
           K + ++GIDPG R TG    +VD  G     + +G I      +L  R  Q  E  L  +
Sbjct: 318 KGMTVMGIDPGYR-TGCKVAVVDETGR---VLETGVI----YVTLGERQRQQGEEVLVRL 369

Query: 60  IKNWRPEEAAV 70
           +   + +  A+
Sbjct: 370 VDKHKVDLIAI 380


>gi|213019865|ref|ZP_03335665.1| putative phage related protein [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|212994549|gb|EEB55197.1| putative phage related protein [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 147

 Score = 42.6 bits (100), Expect = 0.020,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 25/61 (40%), Gaps = 2/61 (3%)

Query: 90  AIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESFFKGKDAADALA 149
           A+         +P       TIK+ + G G+  K ++   +K        +  + +DALA
Sbjct: 79  AVLSAWCEEHHVPYKGVNVKTIKRFIAGNGNASKSEVIEAVKE--KGFLPRDDNESDALA 136

Query: 150 I 150
           +
Sbjct: 137 L 137


>gi|190570707|ref|YP_001975065.1| Putative phage related protein [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|190570761|ref|YP_001975119.1| Putative phage related protein [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|190356979|emb|CAQ54367.1| Putative phage related protein [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|190357033|emb|CAQ54426.1| Putative phage related protein [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
          Length = 154

 Score = 42.6 bits (100), Expect = 0.020,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 25/61 (40%), Gaps = 2/61 (3%)

Query: 90  AIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESFFKGKDAADALA 149
           A+         +P       TIK+ + G G+  K ++   +K        +  + +DALA
Sbjct: 79  AVLSAWCEEHHVPYKGVNVKTIKRFIAGNGNASKSEVIEAVKE--KGFLPRDDNESDALA 136

Query: 150 I 150
           +
Sbjct: 137 L 137


>gi|187477948|ref|YP_785972.1| phage protein [Bordetella avium 197N]
 gi|115422534|emb|CAJ49059.1| phage protein [Bordetella avium 197N]
          Length = 217

 Score = 42.6 bits (100), Expect = 0.021,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 55/150 (36%), Gaps = 15/150 (10%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGT--IVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           I+ +D G  +TG+ +    G     ++ GT         +   +  +    L+ +I +  
Sbjct: 59  ILALDLG-TKTGYALRRRDGR----ITHGTEAFTPRASWTHGQKWQRYRAWLSRMITDHA 113

Query: 65  PEEAAVEQVFVNKDAVATLKLGQA----RAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
               A E V  +    + +    A    RA+  +      I +       +KK   G G+
Sbjct: 114 VGIIAFEDVKAH--GKSGVLAAHAYGGYRAMLEMVADQHNIELVPVGVGVVKKHWTGKGN 171

Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAI 150
            DK    M+ +        +  + ADALAI
Sbjct: 172 ADKA--AMVAQAKARGYRPETDNDADALAI 199


>gi|225872519|ref|YP_002753974.1| S1 RNA binding domain protein [Acidobacterium capsulatum ATCC
           51196]
 gi|225793377|gb|ACO33467.1| S1 RNA binding domain protein [Acidobacterium capsulatum ATCC
           51196]
          Length = 753

 Score = 42.3 bits (99), Expect = 0.027,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 15/72 (20%)

Query: 4   SIRIIGIDPGLRRTGW--GIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEG---LTD 58
            I ++GIDPGLR TG    +VD  G     ++   I     +        + E    +  
Sbjct: 323 PISVLGIDPGLR-TGCKMAVVDETG---KLLAHDVIYPHTSK------HGIAEAQQKVEA 372

Query: 59  VIKNWRPEEAAV 70
           +I+  +    A+
Sbjct: 373 LIRQHQVRAIAI 384


>gi|319405079|emb|CBI78683.1| conserved hypothetical protein [Bartonella sp. AR 15-3]
          Length = 89

 Score = 42.3 bits (99), Expect = 0.027,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 30/81 (37%), Gaps = 8/81 (9%)

Query: 75  VNKDAVATLKLGQARAIAILS----PALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMML 130
           + +               + +        +IP       TIKKA  G G+  K++   M+
Sbjct: 1   MRRHVGTDTDAAHIYGGFLATLTAWCEHHQIPHEGIPVGTIKKATTGKGNASKEE---MI 57

Query: 131 KMLMPESFFKGKD-AADALAI 150
           + +  +      D  ADALAI
Sbjct: 58  EAMCSKGHAPCDDNEADALAI 78


>gi|294340227|emb|CAZ88599.1| putative Holliday junction resolvasome, endonuclease subunit
           [Thiomonas sp. 3As]
          Length = 166

 Score = 41.9 bits (98), Expect = 0.028,   Method: Composition-based stats.
 Identities = 32/153 (20%), Positives = 45/153 (29%), Gaps = 22/153 (14%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRL---CQLYEGLTDVIKNW 63
           I+ +D G + TGW ++            G I S        R       Y      I   
Sbjct: 17  ILALDLGTQ-TGWALLGRD---------GAITSGSELFKPQRFDGGGMRYLRFKRWITEV 66

Query: 64  RPEEAAVEQVFVNKDAVAT-LKLGQARAIAILS----PALARIPVSEYAPNTIKKAVIGV 118
           +     +  VF  +      +    A    +          +IP       TIKK   G 
Sbjct: 67  KQSADGLNAVFFEEVRRHAGVDAAHAYGGFMAHLTAWCEHHQIPYQGVPVGTIKKHATGR 126

Query: 119 GHGDKKQIHMMLKMLMPESFFKGKD-AADALAI 150
           G+  K     M+            D  ADALAI
Sbjct: 127 GNASKD---DMVAAARCRGHAPADDNEADALAI 156


>gi|99034325|ref|ZP_01314361.1| hypothetical protein Wendoof_01000837 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 101

 Score = 41.9 bits (98), Expect = 0.028,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 4/62 (6%)

Query: 90  AIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESFFKGKD-AADAL 148
           A+         IP       TIK+ + G G+  K ++   ++    +SF    D  ADAL
Sbjct: 29  AVLSAWCEENNIPYQGVNVKTIKRFIAGKGNASKSEVIEAIR---EKSFSPRDDNEADAL 85

Query: 149 AI 150
           A+
Sbjct: 86  AL 87


>gi|325278915|ref|YP_004251457.1| Glucokinase [Odoribacter splanchnicus DSM 20712]
 gi|324310724|gb|ADY31277.1| Glucokinase [Odoribacter splanchnicus DSM 20712]
          Length = 320

 Score = 41.9 bits (98), Expect = 0.029,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 3/54 (5%)

Query: 8  IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
          +GID G   T +G +D  G+   +++ G I +   + +   L +LY  +  V+ 
Sbjct: 7  LGIDIGGTNTAFGFIDREGN---YLTEGNIPTAKHEDINDYLKELYLEIEKVLD 57


>gi|302520901|ref|ZP_07273243.1| conserved hypothetical protein [Streptomyces sp. SPB78]
 gi|302429796|gb|EFL01612.1| conserved hypothetical protein [Streptomyces sp. SPB78]
          Length = 197

 Score = 41.9 bits (98), Expect = 0.031,   Method: Composition-based stats.
 Identities = 32/145 (22%), Positives = 47/145 (32%), Gaps = 14/145 (9%)

Query: 6   RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           R++G+D  LR TG     VAG+         I          RL  L + + + I     
Sbjct: 25  RVVGLDLSLRCTG-----VAGEGWT----DVIRPASGMRGHPRLQFLLDAIGEAIT--GA 73

Query: 66  EEAAVEQVFVNKDAVAT-LKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
           +   +E              L   R +A  +    RIP +   P+       G G G K 
Sbjct: 74  DLVVIEGPSFGAGVKHRHEDLAGLRVMARHACWKRRIPYALVPPSCRALYATGRGSGSKG 133

Query: 125 QIHMMLKMLMPE--SFFKGKDAADA 147
            +   +  L           D ADA
Sbjct: 134 AVRSAVADLFGIETEGRGRYDEADA 158


>gi|238027634|ref|YP_002911865.1| hypothetical protein bglu_1g20550 [Burkholderia glumae BGR1]
 gi|237876828|gb|ACR29161.1| Hypothetical protein bglu_1g20550 [Burkholderia glumae BGR1]
          Length = 179

 Score = 41.9 bits (98), Expect = 0.032,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 18/40 (45%)

Query: 111 IKKAVIGVGHGDKKQIHMMLKMLMPESFFKGKDAADALAI 150
           +KKA  G G   K+ +    +        +  D ADALAI
Sbjct: 129 VKKAWTGNGKASKEAMIDEARRRGFRVGAEEDDTADALAI 168


>gi|282598962|ref|YP_003358879.1| hypothetical protein [Deftia phage phiW-14]
 gi|257219032|gb|ACV50047.1| conserved hypothetical protein [Deftia phage phiW-14]
          Length = 183

 Score = 41.9 bits (98), Expect = 0.033,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 32/110 (29%), Gaps = 10/110 (9%)

Query: 47  FRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEY 106
            R   L +     +K    E+  +E   +         + +  A+  L    A I     
Sbjct: 64  ERYTILSDWAMSKLKQHGVEQVYLEGYALGSTTGLVFNIAENTALLKLKMWQAGIKFETP 123

Query: 107 APNTIKKAVIGVGHGDKKQIHMMLKMLM----------PESFFKGKDAAD 146
            P+ +KK   G G   K  +    + L+                  D AD
Sbjct: 124 TPSQVKKFYTGNGAAKKPMMCDRFEALLGVRVSDECGCKRGDAPENDIAD 173


>gi|163798339|ref|ZP_02192265.1| hypothetical protein BAL199_00750 [alpha proteobacterium BAL199]
 gi|159176396|gb|EDP60985.1| hypothetical protein BAL199_00750 [alpha proteobacterium BAL199]
          Length = 171

 Score = 41.9 bits (98), Expect = 0.035,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 56/149 (37%), Gaps = 14/149 (9%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVR--QSLAFRLCQLYEGLTDVIKNWR 64
           ++ +D G   TGW +    G     ++SG              R  +    LT++ +   
Sbjct: 20  VLALDLGTT-TGWALRTPEG----LITSGIARFRPGRYDGGGMRYLRFTNWLTEIDRLSG 74

Query: 65  PEEAAV--EQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
           P  AA+  E+V  +    A    G   A       L  +P +  A  TIK+   G G+  
Sbjct: 75  P-VAAIWFEEVRRHAGTDAAQVYGGLMATLTAWAELRGVPYAGAAVGTIKRHATGKGNAP 133

Query: 123 KKQIHMMLKMLMPESFFKGKD-AADALAI 150
           K     M++      F    D  ADA+AI
Sbjct: 134 K---LAMIQAARARGFSPADDNEADAIAI 159


>gi|30387422|ref|NP_848251.1| crossover junction endodeoxyribonuclease [Enterobacteria phage
           epsilon15]
 gi|30266077|gb|AAO06106.1| crossover junction endodeoxyribonuclease [Salmonella phage
           epsilon15]
          Length = 154

 Score = 41.5 bits (97), Expect = 0.037,   Method: Composition-based stats.
 Identities = 32/155 (20%), Positives = 56/155 (36%), Gaps = 21/155 (13%)

Query: 7   IIGIDPGLRRTG-WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           ++GIDPG   +G   ++   G  +  ++  TI    +  +          +   ++ +  
Sbjct: 4   VLGIDPG--CSGSLVLITEQGHYIDHLAMPTIKVGTKSRVNG------AAVAAWVRQYVI 55

Query: 66  EEAAVEQVFV--NKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
             A +EQV     +   +    G A  +A        IP +   P   KK+  G+   DK
Sbjct: 56  THAYLEQVGAMPGQGTASMFTFGHAAGVAEGILQGLNIPYTLVTPQAWKKS-AGLIGSDK 114

Query: 124 KQIHMMLKMLMPESFFKGKDA-------ADALAIA 151
                  + +      +  DA       ADAL IA
Sbjct: 115 D--AARSRAIQLYPELRALDAKAKGQAIADALLIA 147


>gi|189426995|ref|YP_001950094.1| RuvC_resolvase like protein [Ralstonia phage RSL1]
 gi|189233307|dbj|BAG41664.1| RuvC_resolvase like protein [Ralstonia phage RSL1]
          Length = 200

 Score = 41.5 bits (97), Expect = 0.040,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 30/72 (41%), Gaps = 4/72 (5%)

Query: 4  SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSL---AFRLCQLYEGLTDVI 60
          +IR++  DPG R  G   V      +  +++ +IV+     L     +       +   +
Sbjct: 25 TIRVLSFDPGSRNFGISCVATKNGKVRVMAN-SIVTNPIFDLTRFEVQKKTFLAEIGQWV 83

Query: 61 KNWRPEEAAVEQ 72
          + ++P+    E+
Sbjct: 84 ELYKPQALIAER 95


>gi|160880429|ref|YP_001559397.1| Holliday junction resolvase YqgF [Clostridium phytofermentans
          ISDg]
 gi|189046094|sp|A9KKS6|RUVX_CLOPH RecName: Full=Putative Holliday junction resolvase
 gi|160429095|gb|ABX42658.1| Holliday junction resolvase YqgF [Clostridium phytofermentans
          ISDg]
          Length = 150

 Score = 41.5 bits (97), Expect = 0.041,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 34/84 (40%), Gaps = 17/84 (20%)

Query: 5  IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSG--TIVSCVRQSLAFRLCQLYEGLTDVIKN 62
          +RI+G+D G    G  I     D+L   + G   I       L   L ++     ++IK 
Sbjct: 1  MRIMGLDYGSVTVGVAI----SDSLKLTAQGIEVIRRKSETKLRQTLARI----EELIKE 52

Query: 63 WRPEEAAVEQVFVN--KDAVATLK 84
          +      VE++ +   K+   T+ 
Sbjct: 53 YE-----VEEIVLGYPKNMNNTIG 71


>gi|90425961|ref|YP_534331.1| hypothetical protein RPC_4489 [Rhodopseudomonas palustris BisB18]
 gi|90107975|gb|ABD90012.1| CRISPR-associated endonuclease, Csn1 family [Rhodopseudomonas
          palustris BisB18]
          Length = 1066

 Score = 41.5 bits (97), Expect = 0.042,   Method: Composition-based stats.
 Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 2/27 (7%)

Query: 1  MRKSI--RIIGIDPGLRRTGWGIVDVA 25
          M + +  RI+GID G+   GWG+VD++
Sbjct: 1  MSERVVRRILGIDLGIASCGWGVVDIS 27


>gi|109392360|ref|YP_654904.1| gp7 [Mycobacterium phage Cooper]
 gi|88910194|gb|ABD58124.1| gp7 [Mycobacterium phage Cooper]
          Length = 158

 Score = 41.5 bits (97), Expect = 0.044,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 43/115 (37%), Gaps = 1/115 (0%)

Query: 35  GTIVSCVRQSLAFRLCQLYEGLTDVI-KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAI 93
           G      ++++  R+  L E +      + RP+   +E +       +   L       I
Sbjct: 14  GPTKDKSKRAMCRRVNALLEQIEWCFTDDERPDAMGIEALAYGAKGASAWVLPWIFGRVI 73

Query: 94  LSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESFFKGKDAADAL 148
                  +P++  +     K   G G+ DK+ + +     +PE+     + ADAL
Sbjct: 74  ELAEKYDVPLTTVSTAGRAKFATGKGNADKETVLLAAARAVPEAAVTNNNEADAL 128


>gi|311693107|gb|ADP95980.1| transcriptional accessory protein [marine bacterium HP15]
          Length = 779

 Score = 41.5 bits (97), Expect = 0.044,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 9/65 (13%)

Query: 8   IGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           +G+DPGLR TG    ++D  G        G I     Q+   R   + E L    + ++ 
Sbjct: 328 LGLDPGLR-TGVKVAVIDGTGQVA---GHGAIFPHAPQNQWDR--SI-EQLAAWCREYKI 380

Query: 66  EEAAV 70
           E  A+
Sbjct: 381 ELVAI 385


>gi|118462497|ref|YP_879576.1| gp6 protein [Mycobacterium avium 104]
 gi|118163784|gb|ABK64681.1| gp6 protein [Mycobacterium avium 104]
          Length = 203

 Score = 41.5 bits (97), Expect = 0.045,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 44/124 (35%), Gaps = 4/124 (3%)

Query: 7   IIGIDPGLRRTGWGIVD-VAGDNLCFVS-SGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++G+D  L   G    D V GD    V  S    S    +   R   L +G+        
Sbjct: 11  VVGLDLSLTGAGIAAFDLVTGDLSTAVHRSQAPKSDTLGAHVARHRALVDGIVQQTIGCD 70

Query: 65  PEEAAVEQVFVNKDAV--ATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
           P    VE +  +  A   +  + G      +     A  PV E  P+ IK+   G G+  
Sbjct: 71  PALVVVEGLRFSVSAQDSSLSRRGFLWWAVVEGLVNAGAPVLEVTPSQIKQLATGKGNAS 130

Query: 123 KKQI 126
           K  I
Sbjct: 131 KNMI 134


>gi|320107286|ref|YP_004182876.1| Tex-like protein [Terriglobus saanensis SP1PR4]
 gi|319925807|gb|ADV82882.1| Tex-like protein [Terriglobus saanensis SP1PR4]
          Length = 750

 Score = 41.5 bits (97), Expect = 0.046,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 11/69 (15%)

Query: 4   SIRIIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
            I ++GIDPGLR TG    IVD  G    F++   I          R  +  + L  V+K
Sbjct: 323 PISVLGIDPGLR-TGCKIAIVDETG---KFLAHDVIY-----PHTGRTNEATQKLDAVMK 373

Query: 62  NWRPEEAAV 70
           +      A+
Sbjct: 374 SHNVRAIAI 382


>gi|222112385|ref|YP_002554649.1| hypothetical protein Dtpsy_3220 [Acidovorax ebreus TPSY]
 gi|221731829|gb|ACM34649.1| conserved hypothetical protein [Acidovorax ebreus TPSY]
          Length = 158

 Score = 41.5 bits (97), Expect = 0.046,   Method: Composition-based stats.
 Identities = 33/152 (21%), Positives = 56/152 (36%), Gaps = 20/152 (13%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGT--IVSCVRQSLAFRLCQLYEGLTDVIKNW- 63
           I+ +D G   TGW +    G     ++SG+        +    R  +    LT++ ++  
Sbjct: 5   ILALDLG-TMTGWALRGSDG----HITSGSESFRPQRFEGGGMRFLRFKRWLTEIKQSCD 59

Query: 64  RPEEAAVEQVFVNKDAVATLKLGQARAIAILS----PALARIPVSEYAPNTIKKAVIGVG 119
             +    E+V   +  V+T     A    + +        +IP       TIKK   G G
Sbjct: 60  EIDCLHFEEV---RRHVST-DAAHAYGGFLATLTAWCEHHQIPYQGVPVGTIKKHATGKG 115

Query: 120 HGDKKQIHMMLKMLMPESFFKGKD-AADALAI 150
           +  K +   M+            D  ADALA+
Sbjct: 116 NASKDE---MVASARARGHAPADDNEADALAL 144


>gi|255985681|gb|ACU46866.1| putative Holliday junction endonuclease [Lactococcus phage CB13]
          Length = 159

 Score = 41.1 bits (96), Expect = 0.051,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 52/136 (38%), Gaps = 23/136 (16%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLC--FVSSGTIVSCVRQSLAFRLCQLYEGLTD 58
           M K+   + ID     TG+       + L   +V  G+I     +    R  Q+ +G+T+
Sbjct: 1   MSKA---LAIDFSTSNTGYAF----RNPLTNEYV-VGSIAGGKSKDPLERAKQIADGITE 52

Query: 59  VIKNWR-PEEAA-VEQVFVNKDAVATLKLGQARAIAI-LSPALARIPVSEYAPNT----- 110
           +I+++   +    +E+  +   +   + L +A    + +      I   + + +      
Sbjct: 53  IIEHYNLFDYFIYIEEPIITFKSKGNISLIRANGSFLGVMRNRHNIGYVDISNSMWCGYH 112

Query: 111 -IKKAVIGVGHGDKKQ 125
            IK    G     K+Q
Sbjct: 113 LIK----GKSKARKEQ 124


>gi|189043138|ref|YP_001936079.1| RuvC [Mycobacterium phage BPs]
 gi|239590060|ref|YP_002941909.1| gp51 [Mycobacterium phage Angel]
 gi|171909253|gb|ACB58210.1| RuvC [Mycobacterium phage BPs]
 gi|238890592|gb|ACR77581.1| gp51 [Mycobacterium phage Angel]
 gi|255927895|gb|ACU41515.1| gp51 [Mycobacterium phage Hope]
          Length = 196

 Score = 41.1 bits (96), Expect = 0.052,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 54/164 (32%), Gaps = 20/164 (12%)

Query: 5   IRIIGIDPGLRRTGWGI-VDVA----GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDV 59
           +  +GIDP L  TG  + VD      G       +G   +   + +   + ++       
Sbjct: 1   MIAVGIDPSLTSTGVAVLVDGKLAHYGRYGRPGQNGASYTTRSRRVRRMIREV---TKAA 57

Query: 60  IKNWRPEEAAVEQ-VFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGV 118
           +   RP+   +E+  +   +                +     +P      +T K  V G 
Sbjct: 58  LTAGRPDVFVIEEHPYAVGNQGNEFDRAAIWHGIYGNLDAHEVPGVVVNNSTGKAWVTGA 117

Query: 119 GHGDKKQIHMML-----KMLMP------ESFFKGKDAADALAIA 151
           G   K+ +  ++       + P      ++     D ADA+  A
Sbjct: 118 GRASKEDVIAVIDDWYAGQIDPPLAKWRKTVDHPDDVADAIGYA 161


>gi|77918517|ref|YP_356332.1| transcriptional accessory protein [Pelobacter carbinolicus DSM
           2380]
 gi|77544600|gb|ABA88162.1| transcriptional accessory protein [Pelobacter carbinolicus DSM
           2380]
          Length = 759

 Score = 41.1 bits (96), Expect = 0.055,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 13/71 (18%)

Query: 4   SIRIIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTI--VSCVRQSLAFRLCQLYEGLTDV 59
           S R++G+DPGLR TG     VD  G    ++   TI   +   Q    R       L  +
Sbjct: 323 SRRVLGVDPGLR-TGSKLAAVDGTG---RYLEDATIYPHTGKSQIEPAR-----AQLLRL 373

Query: 60  IKNWRPEEAAV 70
           I+    E  A+
Sbjct: 374 IQTHGIEMVAI 384


>gi|109392339|ref|YP_655569.1| gp52 [Mycobacterium phage Halo]
 gi|91980589|gb|ABE67309.1| RuvC [Mycobacterium phage Halo]
          Length = 196

 Score = 41.1 bits (96), Expect = 0.059,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 54/164 (32%), Gaps = 20/164 (12%)

Query: 5   IRIIGIDPGLRRTGWGI-VDVA----GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDV 59
           +  +GIDP L  TG  + VD      G       +G   +   + +   + ++       
Sbjct: 1   MIAVGIDPSLTSTGVAVLVDGKLAHYGRYGRPGQNGASYTTRSRRVRRMIREV---TKAA 57

Query: 60  IKNWRPEEAAVEQ-VFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGV 118
           +   RP+   +E+  +   +                +     +P      +T K  V G 
Sbjct: 58  LTAGRPDVFVIEEHPYAVGNQGNEFDRAAIWHGIYGNLDAHEVPGVVVNNSTGKAWVTGA 117

Query: 119 GHGDKKQIHMML-----KMLMP------ESFFKGKDAADALAIA 151
           G   K+ +  ++       + P      ++     D ADA+  A
Sbjct: 118 GRASKEDVIAVIDDWYAGQIDPPLAKWRKTVDHPDDVADAIGYA 161


>gi|332975263|gb|EGK12163.1| hypothetical protein HMPREF0476_0162 [Kingella kingae ATCC 23330]
          Length = 67

 Score = 41.1 bits (96), Expect = 0.060,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 18/42 (42%), Gaps = 3/42 (7%)

Query: 7  IIGIDPGLRRTGWGIVDVA--GDNLCFVSSGTIVSCVRQSLA 46
          I+G+D G+   GW +V++    + L  +  G   +       
Sbjct: 9  ILGLDLGIASCGWAVVEMDEQENPLRLIDVGV-RTFEEAETP 49


>gi|169349750|ref|ZP_02866688.1| hypothetical protein CLOSPI_00488 [Clostridium spiroforme DSM
          1552]
 gi|169293825|gb|EDS75958.1| hypothetical protein CLOSPI_00488 [Clostridium spiroforme DSM
          1552]
          Length = 1116

 Score = 40.7 bits (95), Expect = 0.066,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 21/39 (53%), Gaps = 7/39 (17%)

Query: 3  KSIRI-----IGIDPGLRRTGWGIVDVAGDNLCFVSSGT 36
          K ++I     +G+D G+   G+G++D+  +   FV  G 
Sbjct: 7  KEMKIMGRLVLGLDIGITSVGYGVIDIDKN--EFVDYGV 43


>gi|291087071|ref|ZP_06345320.2| putative Holliday junction resolvase [Clostridium sp. M62/1]
 gi|291076386|gb|EFE13750.1| putative Holliday junction resolvase [Clostridium sp. M62/1]
          Length = 175

 Score = 40.7 bits (95), Expect = 0.071,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 36/71 (50%), Gaps = 7/71 (9%)

Query: 1  MRK-SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDV 59
          M K  +RI+G+D G + TG  + D  G     +++  + + VR+    +L Q    + ++
Sbjct: 31 MEKYQMRIMGLDFGSKTTGVAVSDPLG-----LTAQGLETIVRKD-ENKLRQTCARIEEL 84

Query: 60 IKNWRPEEAAV 70
          I+ ++ E   +
Sbjct: 85 IEEYQIEAIVL 95


>gi|46201154|ref|ZP_00207990.1| hypothetical protein Magn03010367 [Magnetospirillum magnetotacticum
           MS-1]
          Length = 190

 Score = 40.7 bits (95), Expect = 0.071,   Method: Composition-based stats.
 Identities = 31/147 (21%), Positives = 52/147 (35%), Gaps = 10/147 (6%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGT--IVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++ +D G   TGW ++   G     + SGT        +    R  +    L  ++ + +
Sbjct: 39  VLALDLGST-TGWAMLLADGT----LVSGTMQFRPSRYEGGGMRYLRFRSWLDHLLNSAK 93

Query: 65  -PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
                  E+V  +    A    G   A       L  IP       TIK+   G G+  K
Sbjct: 94  EIGSVCFEEVRRHAGTDAAHLYGGFLAHLSAWCELNDIPYQGVPVGTIKRHATGKGNAGK 153

Query: 124 KQIHMMLKMLMPESFFKGKDAADALAI 150
             +   ++        +  + ADALAI
Sbjct: 154 DAVIAAMRA--KGFNPEDDNEADALAI 178


>gi|288870608|ref|ZP_06114688.2| putative holliday junction resolvase [Clostridium hathewayi DSM
          13479]
 gi|288866578|gb|EFC98876.1| putative holliday junction resolvase [Clostridium hathewayi DSM
          13479]
          Length = 161

 Score = 40.7 bits (95), Expect = 0.074,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 37/84 (44%), Gaps = 11/84 (13%)

Query: 1  MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
          MR  +RI+G+D G +  G  + D  G     +++  + +  R+    +L +    + ++I
Sbjct: 14 MR--MRIMGLDYGSKTVGVAVSDSLG-----LTAQALETITRED-ENKLRKTCARIEELI 65

Query: 61 KNWRPEEAAVEQVFVNKDAVATLK 84
          + +  E      +   K+   TL 
Sbjct: 66 REYEIETIV---LGYPKNMNNTLG 86


>gi|329964008|ref|ZP_08301262.1| Tex-like protein [Bacteroides fluxus YIT 12057]
 gi|328526431|gb|EGF53445.1| Tex-like protein [Bacteroides fluxus YIT 12057]
          Length = 711

 Score = 40.7 bits (95), Expect = 0.075,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 9/67 (13%)

Query: 6   RIIGIDPGLRRTGWGIV--DVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           R++GIDPG R TG  +V  D  G+    + +  I      S      + +  L  +I+ +
Sbjct: 315 RVMGIDPGFR-TGCKVVCLDAQGN---LLHNENIYPHPPVSKG---KEAFSKLQKMIEAY 367

Query: 64  RPEEAAV 70
           + +  A+
Sbjct: 368 KIDAIAI 374


>gi|188994244|ref|YP_001928496.1| partial ROK family transcriptional repressor with glucose kinase
          domain [Porphyromonas gingivalis ATCC 33277]
 gi|188593924|dbj|BAG32899.1| partial ROK family transcriptional repressor with glucose kinase
          domain [Porphyromonas gingivalis ATCC 33277]
          Length = 259

 Score = 40.7 bits (95), Expect = 0.075,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 7  IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
          ++G+D G   T +G+VD  G+    V S +I +     L   +  L  G+  +I+ 
Sbjct: 6  VLGVDVGGTNTVFGVVDARGN---LVISSSIKTGAHNDLNDYIKDLTAGINQLIEQ 58


>gi|255985625|gb|ACU46811.1| putative Holliday junction endonuclease [Lactococcus phage SL4]
          Length = 159

 Score = 40.3 bits (94), Expect = 0.080,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 54/142 (38%), Gaps = 23/142 (16%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLC--FVSSGTIVSCVRQSLAFRLCQLYEGLTD 58
           M K+   + ID     TG+       + L   +V  G+I     +    R   + +G+T+
Sbjct: 1   MSKA---LAIDFSTSNTGYAF----RNPLTNEYV-VGSIAGGKSKDPLERAKLIADGITE 52

Query: 59  VIKNWR-PEEAA-VEQVFVNKDAVATLKLGQARAIAI-LSPALARIPVSEYAPNT----- 110
           +I+++   +    +E+  +   +   + L +A    + +      I   + + +      
Sbjct: 53  IIEHYNLFDYFIYIEEPIITFKSKGNISLIRANGSFLGVMRNRHNIGYVDISNSMWCGYH 112

Query: 111 -IKKAVIGVGHGDKKQIHMMLK 131
            IK    G     K+Q   +LK
Sbjct: 113 LIK----GKSKARKEQSIEILK 130


>gi|9629706|ref|NP_044999.1| hypothetical protein sk1p55 [Lactococcus phage sk1]
 gi|2392877|gb|AAB70092.1| unknown [Lactococcus phage sk1]
          Length = 160

 Score = 40.3 bits (94), Expect = 0.084,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 60/158 (37%), Gaps = 14/158 (8%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLC--FVSSGTIVSCVRQSLAFRLCQLYEGLTD 58
           M K+   + ID     TG+       + L   +V  G+I     +    R   + +G+T+
Sbjct: 1   MSKA---LAIDFSTSNTGYAF----RNPLTNEYV-VGSIAGGKSKDPLERAKLIADGITE 52

Query: 59  VIKNWR-PEEAA-VEQVFVNKDAVATLKLGQARAIAI-LSPALARIPVSEYAPNTIKKAV 115
           VI+++   +    +E+  +   +   + L +A    + +      I   +   +      
Sbjct: 53  VIEHYNLFDYFIYIEEPIITFKSKGNISLIRANGSFLGVMRNRHNIGYVDVPNSKWCGYH 112

Query: 116 IGVGHGDKKQIHMMLKMLMPESFFKGKDAADALAIAVC 153
           +  G    +++   +++L   +     D  D +A A C
Sbjct: 113 LIKGKSALRKVQS-IEILKSYNIVPDNDINDDMADAFC 149


>gi|317478706|ref|ZP_07937860.1| tex-like protein domain-containing protein [Bacteroides sp. 4_1_36]
 gi|316905136|gb|EFV26936.1| tex-like protein domain-containing protein [Bacteroides sp. 4_1_36]
          Length = 704

 Score = 40.3 bits (94), Expect = 0.085,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 9/67 (13%)

Query: 6   RIIGIDPGLRRTGWGIV--DVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           R++GIDPG R TG  +V  D  G+    + +  I      S      + +  L  +I+++
Sbjct: 308 RVMGIDPGFR-TGCKVVCLDAQGN---LLHNENIYPHPPVSKQ---KEAFAKLQMMIESY 360

Query: 64  RPEEAAV 70
           + +  A+
Sbjct: 361 KIDAVAI 367


>gi|270293991|ref|ZP_06200193.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270275458|gb|EFA21318.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 711

 Score = 40.3 bits (94), Expect = 0.085,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 9/67 (13%)

Query: 6   RIIGIDPGLRRTGWGIV--DVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           R++GIDPG R TG  +V  D  G+    + +  I      S      + +  L  +I+++
Sbjct: 315 RVMGIDPGFR-TGCKVVCLDAQGN---LLHNENIYPHPPVSKQ---KEAFAKLQMMIESY 367

Query: 64  RPEEAAV 70
           + +  A+
Sbjct: 368 KIDAVAI 374


>gi|160889663|ref|ZP_02070666.1| hypothetical protein BACUNI_02090 [Bacteroides uniformis ATCC 8492]
 gi|156860655|gb|EDO54086.1| hypothetical protein BACUNI_02090 [Bacteroides uniformis ATCC 8492]
          Length = 704

 Score = 40.3 bits (94), Expect = 0.086,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 9/67 (13%)

Query: 6   RIIGIDPGLRRTGWGIV--DVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           R++GIDPG R TG  +V  D  G+    + +  I      S      + +  L  +I+++
Sbjct: 308 RVMGIDPGFR-TGCKVVCLDAQGN---LLHNENIYPHPPVSKQ---KEAFAKLQMMIESY 360

Query: 64  RPEEAAV 70
           + +  A+
Sbjct: 361 KIDAVAI 367


>gi|258405254|ref|YP_003197996.1| Holliday junction resolvase YqgF [Desulfohalobium retbaense DSM
           5692]
 gi|257797481|gb|ACV68418.1| Holliday junction resolvase YqgF [Desulfohalobium retbaense DSM
           5692]
          Length = 142

 Score = 40.3 bits (94), Expect = 0.087,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 42/100 (42%), Gaps = 10/100 (10%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +R +GID GL+R G  + D     +  ++  T+    RQ+L       +E L   I+ + 
Sbjct: 1   MRYLGIDFGLKRVGLALSDSQATVVTPLA--TVQRSTRQAL-------FEELLAYIETYA 51

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVS 104
            E   +  +  + +  ATL   QAR           +P+ 
Sbjct: 52  IEAVVI-GLPYDLEGTATLTTRQARNFGTSLARRIALPIY 90


>gi|327398794|ref|YP_004339663.1| hypothetical protein Hipma_0634 [Hippea maritima DSM 10411]
 gi|327181423|gb|AEA33604.1| hypothetical protein Hipma_0634 [Hippea maritima DSM 10411]
          Length = 158

 Score = 40.3 bits (94), Expect = 0.088,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 52/149 (34%), Gaps = 19/149 (12%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+  DPG +   + +       L       I +   +S   +L   +  L   IKN+   
Sbjct: 2   ILACDPGTKHCAFAL--YKDGKL-------IATYKVKSTFDKLKGFFSALN--IKNY--- 47

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKK-AVIGVGHGDKKQ 125
              +E  ++N +      L + RA  +    +         P    +  ++GV    K++
Sbjct: 48  IFVIEDQYLNLNVRTLKALVEIRATVLTLARIYNASNCIVVPPQKWQRTMLGVHIKSKRE 107

Query: 126 IHMMLKML----MPESFFKGKDAADALAI 150
                  L    + +   K  D ADA+ I
Sbjct: 108 QRKNASRLAASEIAKEKVKDSDVADAICI 136


>gi|299137090|ref|ZP_07030273.1| Tex-like protein-like protein [Acidobacterium sp. MP5ACTX8]
 gi|298601605|gb|EFI57760.1| Tex-like protein-like protein [Acidobacterium sp. MP5ACTX8]
          Length = 752

 Score = 40.3 bits (94), Expect = 0.089,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 11/66 (16%)

Query: 7   IIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++GIDPGLR TG    IVD  G    F++   I          R  +  + L  ++    
Sbjct: 326 VLGIDPGLR-TGCKIAIVDETG---KFLAHDVIY-----PHTGRTTEATQKLAALVAKHN 376

Query: 65  PEEAAV 70
               A+
Sbjct: 377 VRAIAI 382


>gi|325578067|ref|ZP_08148261.1| CRISPR-associated endonuclease Csn1 family protein [Haemophilus
          parainfluenzae ATCC 33392]
 gi|325160300|gb|EGC72428.1| CRISPR-associated endonuclease Csn1 family protein [Haemophilus
          parainfluenzae ATCC 33392]
          Length = 1054

 Score = 40.3 bits (94), Expect = 0.093,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 20/42 (47%), Gaps = 3/42 (7%)

Query: 7  IIGIDPGLRRTGWGIVDVA--GDNLCFVSSGTIVSCVRQSLA 46
          I+G+D G+   GW +V++    + L  +  G   +  R  + 
Sbjct: 9  ILGLDLGIASVGWAVVEIDEKENPLRLIDVGV-RTFERAEVP 49


>gi|162448419|ref|YP_001610786.1| hypothetical protein sce0149 [Sorangium cellulosum 'So ce 56']
 gi|161159001|emb|CAN90306.1| hypothetical protein sce0149 [Sorangium cellulosum 'So ce 56']
          Length = 163

 Score = 40.3 bits (94), Expect = 0.093,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 38/114 (33%), Gaps = 7/114 (6%)

Query: 19  WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVE--QVFV- 75
           W +VD   D    V + T  +        RL    + LT ++  ++P   AV   + F  
Sbjct: 24  WAVVDGTIDRPVLVDAKTTSAPKGWDEPARLNWYRKELTRILNLYQPRRLAVRDAEAFGP 83

Query: 76  -NKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHM 128
             ++  +     +   +AI       + V          A +G     KK I  
Sbjct: 84  KGRN-KSLQDRARIEGVAIELAYSLGVEVQS-GAMKTISARLGS-KAGKKHIAE 134


>gi|209883956|ref|YP_002287813.1| holliday junction resolvasome, endonuclease subunit [Oligotropha
           carboxidovorans OM5]
 gi|209872152|gb|ACI91948.1| holliday junction resolvasome, endonuclease subunit [Oligotropha
           carboxidovorans OM5]
          Length = 178

 Score = 40.3 bits (94), Expect = 0.095,   Method: Composition-based stats.
 Identities = 39/160 (24%), Positives = 57/160 (35%), Gaps = 36/160 (22%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEG----------- 55
           I+ +D G   TGW + D           G I S V+Q    R    +EG           
Sbjct: 27  ILALDLGST-TGWALRDTT---------GVITSGVQQFRPNR----FEGGGMAFLRFNHW 72

Query: 56  LTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILS----PALARIPVSEYAPNTI 111
           L+++  +  P  AAV   F    A A           +           +P       TI
Sbjct: 73  LSELAGSPGP-IAAV--FFEEVRAHAGTLAAHVYGGFLAHLEAWAEFRDVPYQGVPVGTI 129

Query: 112 KKAVIGVGHGDKKQIHMMLKMLMPESFFKGKD-AADALAI 150
           K+ + G G+ DK+ +   +K      F    D  ADA+AI
Sbjct: 130 KRFIAGKGNADKQAVIAAVKA---RGFAPIDDNEADAIAI 166


>gi|254481001|ref|ZP_05094247.1| S1 RNA binding domain protein [marine gamma proteobacterium
           HTCC2148]
 gi|214038796|gb|EEB79457.1| S1 RNA binding domain protein [marine gamma proteobacterium
           HTCC2148]
          Length = 772

 Score = 40.3 bits (94), Expect = 0.096,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 9/65 (13%)

Query: 8   IGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           IG+DPGLR TG    ++D  G     +  G I          R+ +    L  +I+  + 
Sbjct: 328 IGLDPGLR-TGVKVAVIDANG---KVLDHGAIFPN---PPQKRIQEAGATLLHMIRQHKV 380

Query: 66  EEAAV 70
           E  A+
Sbjct: 381 ELIAI 385


>gi|41582344|gb|AAS07958.1| S1 RNA binding domain protein [uncultured marine bacterium 463]
          Length = 772

 Score = 40.3 bits (94), Expect = 0.096,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 9/65 (13%)

Query: 8   IGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           IG+DPGLR TG    ++D  G     +  G I          R+ +    L  +I+  + 
Sbjct: 328 IGLDPGLR-TGVKVAVIDANG---KVLDHGAIFPN---PPQKRIQEAGATLLHMIRQHKV 380

Query: 66  EEAAV 70
           E  A+
Sbjct: 381 ELIAI 385


>gi|295092198|emb|CBK78305.1| conserved hypothetical protein TIGR00250 [Clostridium cf.
          saccharolyticum K10]
          Length = 140

 Score = 40.3 bits (94), Expect = 0.100,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 34/66 (51%), Gaps = 6/66 (9%)

Query: 5  IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
          +RI+G+D G + TG  + D  G     +++  + + VR+    +L Q    + ++I+ ++
Sbjct: 1  MRIMGLDFGSKTTGVAVSDPLG-----LTAQGLETIVRKD-ENKLRQTCARIEELIEEYQ 54

Query: 65 PEEAAV 70
           E   +
Sbjct: 55 IEAIVL 60


>gi|326425033|ref|YP_004286256.1| holliday junction resolvase [Tsukamurella phage TPA2]
 gi|323145685|gb|ADX31929.1| holliday junction resolvase [Tsukamurella phage TPA2]
          Length = 191

 Score = 39.9 bits (93), Expect = 0.10,   Method: Composition-based stats.
 Identities = 26/151 (17%), Positives = 48/151 (31%), Gaps = 12/151 (7%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCF-----VSSGTIVSCVRQ-----SLAFRLCQLYEGL 56
           ++G+DP L  TG  +++VA             + T+    +       L  R+  + + +
Sbjct: 4   VVGVDPSLTATGLCVLNVAEPAFMDDPAPGYDARTLTVPSKSSKTWHDLYLRIHGVAQTI 63

Query: 57  TDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVI 116
            D +  +  +   +EQ                        A   IPV    P        
Sbjct: 64  NDAVD-YA-DVIVMEQPAFASRTGKQHDRSWLWGEVYTRFADRNIPVLTARPQDRCLYAT 121

Query: 117 GVGHGDKKQIHMMLKMLMPESFFKGKDAADA 147
           G G+  K+++         E      + ADA
Sbjct: 122 GKGNAKKEEVMAATIRRYTEIDIPNNNVADA 152


>gi|171854446|dbj|BAG16449.1| glucose kinase [Porphyromonas gingivalis]
          Length = 319

 Score = 39.9 bits (93), Expect = 0.11,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 7  IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
          ++G+D G   T +G+VD  G+    V S +I +     L   +  L  G+  +I+ 
Sbjct: 6  VLGVDVGGTNTVFGVVDARGN---LVISSSIKTGAHNDLNDYIKDLTAGINQLIEQ 58


>gi|171854440|dbj|BAG16446.1| glucose kinase [Porphyromonas gingivalis]
          Length = 319

 Score = 39.9 bits (93), Expect = 0.11,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 7  IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
          ++G+D G   T +G+VD  G+    V S +I +     L   +  L  G+  +I+ 
Sbjct: 6  VLGVDVGGTNTVFGVVDARGN---LVISSSIKTGAHNDLNDYIKDLTAGINQLIEQ 58


>gi|258515025|ref|YP_003191247.1| RNA binding S1 domain-containing protein [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257778730|gb|ACV62624.1| RNA binding S1 domain protein [Desulfotomaculum acetoxidans DSM
           771]
          Length = 718

 Score = 39.9 bits (93), Expect = 0.11,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 28/67 (41%), Gaps = 11/67 (16%)

Query: 7   IIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIV-SCVRQSLAFRLCQLYEGLTDVIKNW 63
           ++G+DPG R TG  W +VD  G        G +  +  ++ +     +++  L      +
Sbjct: 320 VLGVDPGFR-TGCKWAVVDDTG---KLWEVGVVYPTPPQKKITET-KEIFRQLA---DRY 371

Query: 64  RPEEAAV 70
                A+
Sbjct: 372 GITVIAI 378


>gi|157311084|ref|YP_001469079.1| gp080 [Lactococcus phage KSY1]
 gi|108861424|gb|ABG21623.1| gp080 [Lactococcus phage KSY1]
          Length = 173

 Score = 39.9 bits (93), Expect = 0.11,   Method: Composition-based stats.
 Identities = 34/153 (22%), Positives = 57/153 (37%), Gaps = 19/153 (12%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+ +D     TG+   D     L      +IV    +S A R+  +      +++   
Sbjct: 1   MRILALDYSSASTGFCWYDTEDGTLIL---DSIV-PEEESKADRIQNI---TYKLLRLPT 53

Query: 65  PEEAAVEQVFVNKDAVA--TLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGV---G 119
           P+   VE+V    +A    TL  G    I  L+     +      P   +K+  G     
Sbjct: 54  PDYMVVEEVKSMINADTLRTLLRGVGYTIGQLNVCYRDVEFV--GPGQWRKSAWGKSPRK 111

Query: 120 HGDKKQIHMMLKMLMPESFFK--GKDAADALAI 150
             D KQ+ M    ++ +        D A+AL I
Sbjct: 112 RDDAKQLAM---DMLWDWCIPYSNDDEAEALGI 141


>gi|307945029|ref|ZP_07660365.1| hypothetical protein TRICHSKD4_3702 [Roseibium sp. TrichSKD4]
 gi|307770902|gb|EFO30127.1| hypothetical protein TRICHSKD4_3702 [Roseibium sp. TrichSKD4]
          Length = 209

 Score = 39.9 bits (93), Expect = 0.11,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 30/77 (38%), Gaps = 17/77 (22%)

Query: 9  GIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLY------------EGL 56
          G+D     TGWG++   G     +SSGT+   +++       ++               L
Sbjct: 6  GLDVSKTCTGWGLITPEG-----ISSGTMRCKIKRPFELPAGKIDAAYAGKVGDWYQREL 60

Query: 57 TDVIKNWRPEEAAVEQV 73
             +   +P+  A+EQ 
Sbjct: 61 DAWLVKHKPDTIAIEQP 77


>gi|171854442|dbj|BAG16447.1| glucose kinase [Porphyromonas gingivalis]
          Length = 319

 Score = 39.9 bits (93), Expect = 0.11,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 7  IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
          ++G+D G   T +G+VD  G+    V S +I +     L   +  L  G+  +I+ 
Sbjct: 6  VLGVDVGGTNTVFGVVDARGN---LVISSSIKTGAHNDLNDYIKDLTAGINQLIEQ 58


>gi|126666628|ref|ZP_01737606.1| Transcriptional accessory protein [Marinobacter sp. ELB17]
 gi|126629016|gb|EAZ99635.1| Transcriptional accessory protein [Marinobacter sp. ELB17]
          Length = 483

 Score = 39.9 bits (93), Expect = 0.11,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 9/65 (13%)

Query: 8   IGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           +G+DPGLR TG    ++D  G     +  G I     ++       + E L    + +  
Sbjct: 326 LGLDPGLR-TGVKVAVIDGIGQ---VLDHGAIFPHAPRNQWE--ASI-EQLRKWCRQYNI 378

Query: 66  EEAAV 70
           E  A+
Sbjct: 379 ELVAI 383


>gi|116618382|ref|YP_818753.1| transcriptional accessory protein [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|116097229|gb|ABJ62380.1| Transcriptional accessory protein [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
          Length = 730

 Score = 39.9 bits (93), Expect = 0.11,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 54/133 (40%), Gaps = 28/133 (21%)

Query: 1   MRKSIR---IIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEG 55
           M+  ++   ++G DPG R TG    I+D  G    F++   I      ++  R   +   
Sbjct: 324 MQAPLKNKIVMGFDPGFR-TGSKLAIIDSNG---KFLAKQVIYPHKPANVQKRSEAI-NT 378

Query: 56  LTDVIKNWRPEEAAV---------EQVFVNKDAVATLK---LGQARAIAILSPALA---- 99
              ++ +++ E  A+         E+ FV ++  A +K   + +A A    +   A    
Sbjct: 379 FKQLVSDYKVELVAIGNGTASRESEE-FVAENLPAGVKYTIVNEAGASVYSASEQAREEF 437

Query: 100 -RIPVSEYAPNTI 111
             + V E +  +I
Sbjct: 438 PDLHVEERSAISI 450


>gi|255985734|gb|ACU46918.1| putative Holliday junction endonuclease [Lactococcus phage CB14]
          Length = 160

 Score = 39.9 bits (93), Expect = 0.11,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 61/160 (38%), Gaps = 26/160 (16%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLC--FVSSGTIVSCVRQSLAFRLCQLYEGLTD 58
           M K+   + ID     TG+       + L   +V  G+I     +    R   + +G+T+
Sbjct: 1   MSKA---LAIDFSTSNTGYAF----RNPLTNEYV-VGSIAGGKSKDPLERAKIIADGITE 52

Query: 59  VIKNWR-PEEAA-VEQVFVNKDAVATLKLGQARAIAI-LSPALARIPVSEYAPNT----- 110
           +I+++   +    +E+  +   +   + L +A    + +      I   +   +      
Sbjct: 53  IIEHYNLFDYFIYIEEPIITFKSKGNISLIRANGSFLGVMRNRHNIGYVDIPNSKWCGYH 112

Query: 111 -IKKAVIGVGHGDKKQIHMMLK--MLMPESFFKGKDAADA 147
            IK    G     K Q   +LK   ++P++     D ADA
Sbjct: 113 LIK----GKSAMRKAQSIEILKSYNIVPDNDI-NDDQADA 147


>gi|171854448|dbj|BAG16450.1| glucose kinase [Porphyromonas gingivalis]
          Length = 319

 Score = 39.9 bits (93), Expect = 0.11,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 7  IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
          ++G+D G   T +G+VD  G+    V S +I +     L   +  L  G+  +I+ 
Sbjct: 6  VLGVDVGGTNTVFGVVDARGN---LVISSSIKTGAHNDLNDYIKDLTAGINQLIEQ 58


>gi|171854444|dbj|BAG16448.1| glucose kinase [Porphyromonas gingivalis]
          Length = 319

 Score = 39.9 bits (93), Expect = 0.12,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 7  IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
          ++G+D G   T +G+VD  G+    V S +I +     L   +  L  G+  +I+ 
Sbjct: 6  VLGVDVGGTNTVFGVVDARGN---LVISSSIKTGAHNDLNDYIKDLTAGINQLIEQ 58


>gi|227431684|ref|ZP_03913715.1| S1 domain RNA-binding protein [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
 gi|227352557|gb|EEJ42752.1| S1 domain RNA-binding protein [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
          Length = 730

 Score = 39.9 bits (93), Expect = 0.12,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 54/133 (40%), Gaps = 28/133 (21%)

Query: 1   MRKSIR---IIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEG 55
           M+  ++   ++G DPG R TG    I+D  G    F++   I      ++  R   +   
Sbjct: 324 MQAPLKNKIVMGFDPGFR-TGSKLAIIDSNG---KFLAKQVIYPHKPANVQKRSEAI-NT 378

Query: 56  LTDVIKNWRPEEAAV---------EQVFVNKDAVATLK---LGQARAIAILSPALA---- 99
              ++ +++ E  A+         E+ FV ++  A +K   + +A A    +   A    
Sbjct: 379 FKQLVSDYKVELVAIGNGTASRESEE-FVAENLPAGVKYTIVNEAGASVYSASEQAREEF 437

Query: 100 -RIPVSEYAPNTI 111
             + V E +  +I
Sbjct: 438 PDLHVEERSAISI 450


>gi|330814160|ref|YP_004358399.1| putative Holliday junction resolvase [Candidatus Pelagibacter sp.
          IMCC9063]
 gi|327487255|gb|AEA81660.1| putative Holliday junction resolvase [Candidatus Pelagibacter sp.
          IMCC9063]
          Length = 156

 Score = 39.9 bits (93), Expect = 0.13,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 9/57 (15%)

Query: 6  RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
          R++GIDPG R  G  I D        +    I +      A +L  L E L  +I  
Sbjct: 21 RLLGIDPGKRNVGIAICD-----PSHL----IATPYETIQAKKLKNLLEELDKIIIE 68


>gi|301060903|ref|ZP_07201705.1| conserved hypothetical protein [delta proteobacterium NaphS2]
 gi|300444946|gb|EFK08909.1| conserved hypothetical protein [delta proteobacterium NaphS2]
          Length = 153

 Score = 39.9 bits (93), Expect = 0.13,   Method: Composition-based stats.
 Identities = 31/151 (20%), Positives = 53/151 (35%), Gaps = 20/151 (13%)

Query: 8   IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEE 67
           IG+DPG  +TG   +         +           SL      +       + N++   
Sbjct: 7   IGVDPG--KTGAAALITDEGIHDVLDY-----PGDPSL------IVATFRGWLLNYKIVM 53

Query: 68  AAVEQVFVN--KDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGV--GHGDK 123
           AA+E+V     +  V+    G+         +   IP     P   +K +I    G+  K
Sbjct: 54  AALEKVSARPGQGVVSMFTFGRNLGAWEGIISAFGIPFMMPTPRQWQKGLIDQKAGNDTK 113

Query: 124 KQIHMMLKMLMPESFF--KGKDA-ADALAIA 151
            +     + L P++    K     ADAL +A
Sbjct: 114 ARSLNTARRLFPDAELARKKDHGRADALLLA 144


>gi|150005421|ref|YP_001300165.1| putative RNA-binding protein [Bacteroides vulgatus ATCC 8482]
 gi|149933845|gb|ABR40543.1| putative RNA-binding protein [Bacteroides vulgatus ATCC 8482]
          Length = 709

 Score = 39.9 bits (93), Expect = 0.13,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 9/67 (13%)

Query: 6   RIIGIDPGLRRTGWGIV--DVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           R++GIDPG R TG  IV  D  G     + + TI     ++      Q    +  +++ +
Sbjct: 314 RVMGIDPGYR-TGCKIVCLDAQG---SLLHNETIYPHPPKNEYS---QAARSIVKLVEQY 366

Query: 64  RPEEAAV 70
           + E  A+
Sbjct: 367 QIEAIAI 373


>gi|83310255|ref|YP_420519.1| hypothetical protein amb1156 [Magnetospirillum magneticum AMB-1]
 gi|82945096|dbj|BAE49960.1| hypothetical protein [Magnetospirillum magneticum AMB-1]
          Length = 155

 Score = 39.9 bits (93), Expect = 0.13,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 53/152 (34%), Gaps = 20/152 (13%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRL---CQLYEGLTDVIKNW 63
           I+ +D G   TGW +          ++ G+IVS   +    R       +      + + 
Sbjct: 4   ILALDLGTT-TGWAM---------CLADGSIVSGTMEFKPGRYEGGGMRFLRFRSWLDHL 53

Query: 64  -----RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGV 118
                  +    E+V  +    A    G   A       L  IP       TIK+ V G 
Sbjct: 54  LNGAKAIDLLHFEEVRRHAGTDAAHIYGGFLAHLTAWCELKSIPYQGVPVGTIKRHVTGK 113

Query: 119 GHGDKKQIHMMLKMLMPESFFKGKDAADALAI 150
           G+  K+ +   ++        +  + ADALAI
Sbjct: 114 GNAGKEAVIAAMRS--KGFNPEDDNEADALAI 143


>gi|224024678|ref|ZP_03643044.1| hypothetical protein BACCOPRO_01406 [Bacteroides coprophilus DSM
           18228]
 gi|224017900|gb|EEF75912.1| hypothetical protein BACCOPRO_01406 [Bacteroides coprophilus DSM
           18228]
          Length = 710

 Score = 39.6 bits (92), Expect = 0.14,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 15/70 (21%)

Query: 6   RIIGIDPGLRRTGWGIV--DVAGDNLCFVSSGTIVSCVRQS---LAFRLCQLYEGLTDVI 60
           R++GIDPG R TG  +V  D  G     + +  I     +S   LA R       L  ++
Sbjct: 317 RVLGIDPGFR-TGCKVVCLDAQG---TLLHNEAIYPHPPKSEYQLAGR------KLVKLV 366

Query: 61  KNWRPEEAAV 70
           + +R E  A+
Sbjct: 367 EQYRIEAIAI 376


>gi|213019712|ref|ZP_03335517.1| putative phage related protein [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|212994753|gb|EEB55396.1| putative phage related protein [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 65

 Score = 39.6 bits (92), Expect = 0.14,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 20/40 (50%), Gaps = 2/40 (5%)

Query: 111 IKKAVIGVGHGDKKQIHMMLKMLMPESFFKGKDAADALAI 150
           IK+ + G G+  K ++   +K        +  + +DALA+
Sbjct: 11  IKRFIAGNGNASKSEVIEAVKE--KGFLPRDDNESDALAL 48


>gi|240949037|ref|ZP_04753391.1| CRISPR-associated endonuclease Csn1 family protein
          [Actinobacillus minor NM305]
 gi|240296624|gb|EER47242.1| CRISPR-associated endonuclease Csn1 family protein
          [Actinobacillus minor NM305]
          Length = 1056

 Score = 39.6 bits (92), Expect = 0.15,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 20/42 (47%), Gaps = 3/42 (7%)

Query: 7  IIGIDPGLRRTGWGIVDVAGDNL--CFVSSGTIVSCVRQSLA 46
          I+G+D G+   GW +V++  + L    +  G   +  R  + 
Sbjct: 7  ILGLDLGIASVGWAVVEIDQNELPIRLIDLGV-RTFERAEVP 47


>gi|9628684|ref|NP_043550.1| holin [Lactococcus phage c2]
 gi|1146300|gb|AAA92181.1| holin [Lactococcus phage c2]
          Length = 161

 Score = 39.6 bits (92), Expect = 0.15,   Method: Composition-based stats.
 Identities = 15/98 (15%), Positives = 36/98 (36%), Gaps = 13/98 (13%)

Query: 6  RIIGIDPGLRR-----TGWGIVDVAGDNLCFVSSGTIVS-CVRQSLAFRLCQLYEGLTDV 59
          +I+ ID          TG+      G     +  G+I +   +++   R   +   + D+
Sbjct: 3  KILAIDFSTASKKDEGTGYAF-RKDGQ----LYVGSIKAYNAKKNAWERTFDIVNAIKDI 57

Query: 60 IKNW--RPEEAAVEQVFVNKDAVATLKLGQARAIAILS 95
          I  +  +    A+E   + ++   ++ L       I +
Sbjct: 58 IDEFDLKDYHMAIETPIMGRNRKHSITLANCNGYFIGA 95


>gi|9627924|ref|NP_042322.1| hypothetical protein [Lactococcus phage bIL67]
 gi|522267|gb|AAA74336.1| unknown [Lactococcus phage bIL67]
          Length = 161

 Score = 39.6 bits (92), Expect = 0.16,   Method: Composition-based stats.
 Identities = 16/100 (16%), Positives = 36/100 (36%), Gaps = 17/100 (17%)

Query: 6  RIIGIDPGLRR-----TGWGIVDVAGDNLCFVSSGTIVS-CVRQSLAFRLCQLYEGLTDV 59
          +I+ ID          TG+      G     V  G+I +   +++   R   +   + D+
Sbjct: 3  KILAIDFSTASKKGEGTGYAF-RKDGQ----VYVGSIKAYNPKKTAWERTFDIVNAIKDI 57

Query: 60 IKNWRPE----EAAVEQVFVNKDAVATLKLGQARAIAILS 95
          I  +  +      A+E   + ++   ++ L       I +
Sbjct: 58 IDEF--DLKGYHLAIETPIMGRNRKHSITLANCNGYFIGA 95


>gi|115304288|ref|YP_762587.1| RuvC endonuclease [Lactococcus phage Q54]
 gi|94483042|gb|ABF22572.1| RuvC endonuclease [Lactococcus phage Q54]
          Length = 160

 Score = 39.6 bits (92), Expect = 0.17,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 53/149 (35%), Gaps = 15/149 (10%)

Query: 8   IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEE 67
           + +D     TGW       D    + +G I          R+ Q+   L  +   +    
Sbjct: 6   LALDISTSCTGWAYYVYDDDK---IVTGAIKPRKSLGWRERVEQMQLDLQALTAGYEIVN 62

Query: 68  AAVEQVFVNK--DAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIG--VGHGD- 122
             VEQV   K     +T+KL +A  +   +     +   E+ P+   +A++G   G G  
Sbjct: 63  LVVEQVIHKKPGKVDSTIKLAKANGMLTTTLKHENL--MEFLPSE-WRAMLGMRQGRGVV 119

Query: 123 ----KKQIHMMLKMLMPESFFKGKDAADA 147
               K Q   + +    +      D A+A
Sbjct: 120 RDDLKAQAITLARADGLKLRKTEDDEAEA 148


>gi|237736046|ref|ZP_04566527.1| N-acetylmannosamine kinase [Fusobacterium mortiferum ATCC 9817]
 gi|229421860|gb|EEO36907.1| N-acetylmannosamine kinase [Fusobacterium mortiferum ATCC 9817]
          Length = 302

 Score = 39.6 bits (92), Expect = 0.17,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 27/59 (45%), Gaps = 7/59 (11%)

Query: 5  IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
          +R+IGID G     +G+++  G     + SG   +   +     +  L+E +  +I  +
Sbjct: 1  MRVIGIDIGGTAVKYGLLEEDG---KLLESGEFPTEAGKG----IENLFENMCKIIDKY 52


>gi|212694923|ref|ZP_03303051.1| hypothetical protein BACDOR_04460 [Bacteroides dorei DSM 17855]
 gi|212662483|gb|EEB23057.1| hypothetical protein BACDOR_04460 [Bacteroides dorei DSM 17855]
          Length = 747

 Score = 39.6 bits (92), Expect = 0.17,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 9/67 (13%)

Query: 6   RIIGIDPGLRRTGWGIV--DVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           R++G+DPG R TG  IV  D  G     + + TI     +S      Q    +  +++ +
Sbjct: 352 RVMGVDPGYR-TGCKIVCLDAQG---SLLHNETIYPHPPKSEYS---QAARSIVKLVEQY 404

Query: 64  RPEEAAV 70
           + E  A+
Sbjct: 405 QIEAIAI 411


>gi|115315676|ref|YP_764362.1| Holliday junction endonuclease [Lactococcus phage jj50]
 gi|82471226|gb|ABB77669.1| Holliday junction endonuclease [Lactococcus phage jj50]
          Length = 160

 Score = 39.6 bits (92), Expect = 0.17,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 59/158 (37%), Gaps = 14/158 (8%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLC--FVSSGTIVSCVRQSLAFRLCQLYEGLTD 58
           M K+   + ID     TG+       + L   +V  G+I     +    R   + +G+T+
Sbjct: 1   MSKA---LAIDFSTSNTGYAF----RNPLTNEYV-VGSIAGGKSKDPLERAKLIADGITE 52

Query: 59  VIKNWR-PEEAA-VEQVFVNKDAVATLKLGQARAIAI-LSPALARIPVSEYAPNTIKKAV 115
           +I+++   +    +E+  +   +   + L +A    + +      I   +   +      
Sbjct: 53  IIEHYNLFDYFIYIEEPIITFKSKGNISLIRANGSFLGVMRNRHNIGYVDVPNSKWCGYH 112

Query: 116 IGVGHGDKKQIHMMLKMLMPESFFKGKDAADALAIAVC 153
           +  G    +++   + +L   +     D  D +A A C
Sbjct: 113 LIKGKSALRKVQS-IDILKSYNIVPDNDINDDMADAFC 149


>gi|312882892|ref|ZP_07742624.1| hypothetical protein VIBC2010_19975 [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309369411|gb|EFP96931.1| hypothetical protein VIBC2010_19975 [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 767

 Score = 39.6 bits (92), Expect = 0.18,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 9/65 (13%)

Query: 8   IGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           +G+DPGLR TG    +VD  G     +++ TI     Q    +  Q+   +  +++ ++ 
Sbjct: 327 LGLDPGLR-TGCKVAVVDGTG---KVLATETIYPHPPQKQYEKSLQI---IDALVREFQV 379

Query: 66  EEAAV 70
           +  A+
Sbjct: 380 DLIAI 384


>gi|58699244|ref|ZP_00374044.1| conserved hypothetical protein [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|225630512|ref|YP_002727303.1| hypothetical protein WRi_007630 [Wolbachia sp. wRi]
 gi|58534237|gb|EAL58436.1| conserved hypothetical protein [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|225592493|gb|ACN95512.1| hypothetical protein WRi_007630 [Wolbachia sp. wRi]
          Length = 156

 Score = 39.2 bits (91), Expect = 0.18,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 2/55 (3%)

Query: 96  PALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESFFKGKDAADALAI 150
              + IP    +  TIK+ + G G+  K  +   ++           + AD+LA+
Sbjct: 87  CEESNIPYQGVSVKTIKRFITGKGNASKADVIEAVQK--KGFCPTDDNEADSLAL 139


>gi|296274213|ref|YP_003656844.1| Tex-like protein [Arcobacter nitrofigilis DSM 7299]
 gi|296098387|gb|ADG94337.1| Tex-like protein [Arcobacter nitrofigilis DSM 7299]
          Length = 702

 Score = 39.2 bits (91), Expect = 0.18,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 11/67 (16%)

Query: 7   IIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIV-SCVRQSLAFRLCQLYEGLTDVIKNW 63
           I+GIDPG R TG    ++   G    F+ S  I  +  ++  A       + L  +IK  
Sbjct: 317 ILGIDPGFR-TGCKVAVISDDG---LFLDSAVIYPTKPKEDFANS----AKTLLALIKKH 368

Query: 64  RPEEAAV 70
           +    A+
Sbjct: 369 KVNSIAI 375


>gi|301156486|emb|CBW15957.1| unnamed protein product [Haemophilus parainfluenzae T3T1]
          Length = 1052

 Score = 39.2 bits (91), Expect = 0.18,   Method: Composition-based stats.
 Identities = 9/32 (28%), Positives = 17/32 (53%), Gaps = 2/32 (6%)

Query: 7  IIGIDPGLRRTGWGIVDVA--GDNLCFVSSGT 36
          I+G+D G+   GW +V++    + L  +  G 
Sbjct: 9  ILGLDLGIASVGWAVVEIDEKENPLRLIDVGV 40


>gi|289063572|gb|ADC80112.1| holliday junction endonuclease [Lactococcus lactis phage p2]
          Length = 160

 Score = 39.2 bits (91), Expect = 0.18,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 59/158 (37%), Gaps = 14/158 (8%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLC--FVSSGTIVSCVRQSLAFRLCQLYEGLTD 58
           M K+   + ID     TG+       + L   +V  G+I     +    R   + +G+T+
Sbjct: 1   MSKA---LAIDFSTSNTGYAF----RNPLTNEYV-VGSIAGGKSKDPLERAKLIADGITE 52

Query: 59  VIKNWR-PEEAA-VEQVFVNKDAVATLKLGQARAIAI-LSPALARIPVSEYAPNTIKKAV 115
           VI+++   +    +E+  +   +   + L +A    + +      I   +   +      
Sbjct: 53  VIEHYNLFDYFIYIEEPIITFKSKGNISLIRANGSFLGVMRNRHNIGYVDVPNSKWCGYH 112

Query: 116 IGVGHGDKKQIHMMLKMLMPESFFKGKDAADALAIAVC 153
           +  G    +++   + +L   +     D  D +A A C
Sbjct: 113 LIKGKSALRKVQS-IDILKSYNIVPDNDINDDMADAFC 149


>gi|255012574|ref|ZP_05284700.1| putative transcriptional repressor [Bacteroides sp. 2_1_7]
 gi|256838987|ref|ZP_05544497.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|262382547|ref|ZP_06075684.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|298374534|ref|ZP_06984492.1| glucokinase [Bacteroides sp. 3_1_19]
 gi|301308215|ref|ZP_07214169.1| glucokinase [Bacteroides sp. 20_3]
 gi|256739906|gb|EEU53230.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|262295425|gb|EEY83356.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|298268902|gb|EFI10557.1| glucokinase [Bacteroides sp. 3_1_19]
 gi|300833685|gb|EFK64301.1| glucokinase [Bacteroides sp. 20_3]
          Length = 328

 Score = 39.2 bits (91), Expect = 0.19,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 7  IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
          ++GID G   T +G+VD  G     + SG+I +     +   + +L +GL  VI  
Sbjct: 6  VVGIDIGGTNTVFGVVDARG---TILYSGSIKTGKYADVNDYVAELAKGLKSVIDQ 58


>gi|150010166|ref|YP_001304909.1| putative transcriptional repressor [Parabacteroides distasonis
          ATCC 8503]
 gi|149938590|gb|ABR45287.1| putative transcriptional repressor [Parabacteroides distasonis
          ATCC 8503]
          Length = 328

 Score = 39.2 bits (91), Expect = 0.19,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 7  IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
          ++GID G   T +G+VD  G     + SG+I +     +   + +L +GL  VI  
Sbjct: 6  VVGIDIGGTNTVFGVVDARG---TILYSGSIKTGKYADVNDYVAELAKGLKSVIDQ 58


>gi|237710734|ref|ZP_04541215.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|237727122|ref|ZP_04557603.1| conserved hypothetical protein [Bacteroides sp. D4]
 gi|265750408|ref|ZP_06086471.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|229433978|gb|EEO44055.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
 gi|229455456|gb|EEO61177.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|263237304|gb|EEZ22754.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 709

 Score = 39.2 bits (91), Expect = 0.19,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 9/67 (13%)

Query: 6   RIIGIDPGLRRTGWGIV--DVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           R++G+DPG R TG  IV  D  G     + + TI     +S      Q    +  +++ +
Sbjct: 314 RVMGVDPGYR-TGCKIVCLDAQG---SLLHNETIYPHPPKSEYS---QAARSIVKLVEQY 366

Query: 64  RPEEAAV 70
           + E  A+
Sbjct: 367 QIEAIAI 373


>gi|75675014|ref|YP_317435.1| hypothetical protein Nwi_0818 [Nitrobacter winogradskyi Nb-255]
 gi|74419884|gb|ABA04083.1| conserved hypothetical protein [Nitrobacter winogradskyi Nb-255]
          Length = 177

 Score = 39.2 bits (91), Expect = 0.19,   Method: Composition-based stats.
 Identities = 29/136 (21%), Positives = 53/136 (38%), Gaps = 24/136 (17%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQL-YEG-LTDVIKNWR 64
           I+ +D G R TGW ++  +G     ++SG       +     +  L +E  L D+ ++  
Sbjct: 25  ILALDLGTR-TGWAVLPRSGR----IASGVTEFRPGRFEGAGMAFLRFEKFLADLNRDAG 79

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAIL---------SPALARIPVSEYAPNTIKKAV 115
           P +A V   F    A A     Q     +          +     +PV+     TIK+  
Sbjct: 80  PFDAVV---FEEVRAHAGTLAAQVYGGFLAHLTAWCERKAAPYLGVPVA-----TIKRHA 131

Query: 116 IGVGHGDKKQIHMMLK 131
            G G+  K+ +   ++
Sbjct: 132 TGKGNAPKEDVIRAVR 147


>gi|229825002|ref|ZP_04451071.1| hypothetical protein GCWU000182_00351 [Abiotrophia defectiva ATCC
          49176]
 gi|229790749|gb|EEP26863.1| hypothetical protein GCWU000182_00351 [Abiotrophia defectiva ATCC
          49176]
          Length = 140

 Score = 39.2 bits (91), Expect = 0.20,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 29/69 (42%), Gaps = 11/69 (15%)

Query: 5  IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
          +RI+G+D G +  G  + D  G  L       I       L   L ++    T++ + ++
Sbjct: 1  MRIMGLDLGSKTCGVAVTDGLG--LTAQGLEVIRRKEENKLRQTLARI----TELTEEYK 54

Query: 65 PEEAAVEQV 73
               VE++
Sbjct: 55 -----VEKI 58


>gi|162448175|ref|YP_001621307.1| Tex protein-related transcription accessory protein [Acholeplasma
           laidlawii PG-8A]
 gi|161986282|gb|ABX81931.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Acholeplasma laidlawii PG-8A]
          Length = 724

 Score = 39.2 bits (91), Expect = 0.20,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 10/70 (14%)

Query: 7   IIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTI----VSCVRQSLAFRLCQLYEGLTDVI 60
           I+GIDP  R TG  W +VD  G     +  G I     +   +    ++ Q    L  + 
Sbjct: 318 ILGIDPAFR-TGCKWTVVDQTGQ---VLEKGVIYPHETTQGGRPDPEKVFQAELQLKVLY 373

Query: 61  KNWRPEEAAV 70
           K ++ E  A+
Sbjct: 374 KKYKFELVAI 383


>gi|262273561|ref|ZP_06051375.1| transcription accessory protein [Grimontia hollisae CIP 101886]
 gi|262222539|gb|EEY73850.1| transcription accessory protein [Grimontia hollisae CIP 101886]
          Length = 775

 Score = 39.2 bits (91), Expect = 0.21,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 9/65 (13%)

Query: 8   IGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           +GIDPGLR TG    +VD  G     + + TI          ++ +    +  +IK  + 
Sbjct: 329 LGIDPGLR-TGCKVAVVDATG---KLLDTATIYP---TPPQNKIAESARVVMALIKKHKV 381

Query: 66  EEAAV 70
           +  A+
Sbjct: 382 DLIAI 386


>gi|171911330|ref|ZP_02926800.1| S1 RNA-binding domain protein [Verrucomicrobium spinosum DSM 4136]
          Length = 785

 Score = 39.2 bits (91), Expect = 0.21,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 50/116 (43%), Gaps = 26/116 (22%)

Query: 6   RIIGIDPGLRRTGWGIV--DVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           R++G+DPG R TG  IV  D  G     + +  I      +    L Q    + ++++ +
Sbjct: 327 RVMGVDPGFR-TGCKIVCLDAQG---KLLHNDVIYLLGEGNS---LVQARTLILNLVERF 379

Query: 64  RPEEAAV-------E-QVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTI 111
           + E  A+       E ++F NK       +G  ++I IL    +   +  Y+ + +
Sbjct: 380 KIEAVAIGNGTASRETEMFFNK-------IGLPKSILILMVNESGASI--YSASEV 426


>gi|158337376|ref|YP_001518551.1| hypothetical protein AM1_4255 [Acaryochloris marina MBIC11017]
 gi|158307617|gb|ABW29234.1| conserved hypothetical protein [Acaryochloris marina MBIC11017]
          Length = 170

 Score = 39.2 bits (91), Expect = 0.22,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 38/102 (37%), Gaps = 9/102 (8%)

Query: 56  LTDVIKNWRPEEAAVEQVFVN--KDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKK 113
           L   ++  +P+ A VE+V     +   +T K G      +   A  +IPV    P   K+
Sbjct: 49  LATWVEAAQPQLAIVEKVGAMPKQGVASTFKFGSGYGGLLGICAALQIPVELVTPQRWKR 108

Query: 114 AVIGVGHGDKKQIHMMLKMLMPESFF------KGKD-AADAL 148
            V+     DK       +   P+         K  D  ADAL
Sbjct: 109 VVLAGTTKDKDAAIAYCRRAFPDIELIQPGCRKPHDGVADAL 150


>gi|312880395|ref|ZP_07740195.1| conserved hypothetical protein [Aminomonas paucivorans DSM 12260]
 gi|310783686|gb|EFQ24084.1| conserved hypothetical protein [Aminomonas paucivorans DSM 12260]
          Length = 163

 Score = 39.2 bits (91), Expect = 0.22,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 61/164 (37%), Gaps = 28/164 (17%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFR-LCQLYEGLTD----- 58
           +RI GIDPGLR     I++  G                + +  R L +  + +       
Sbjct: 1   MRICGIDPGLRGA-VAILEADGSPWRI-----------EDMPLRSLGKTRQEVDGAALAR 48

Query: 59  -VIKNWRPEEAAVEQVFV--NKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAV 115
            +++      A VE V     +   +    G+   + +       +P+ E +P T +  V
Sbjct: 49  FLVEAGEIRLAVVEAVHAMPGQGVSSCFSFGRNVGVVVGVLEALGVPLLEVSPRTWQGDV 108

Query: 116 I-GVGHGDKKQIHMMLKMLMPESFF-----KGKDA-ADALAIAV 152
           + G     K++      +  P +       KG D  ADALA+A 
Sbjct: 109 LRGTPGDGKERALRWASLAFPGASLFTPRGKGLDGRADALALAW 152


>gi|301059600|ref|ZP_07200512.1| conserved hypothetical protein [delta proteobacterium NaphS2]
 gi|300446365|gb|EFK10218.1| conserved hypothetical protein [delta proteobacterium NaphS2]
          Length = 153

 Score = 38.8 bits (90), Expect = 0.23,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 50/151 (33%), Gaps = 20/151 (13%)

Query: 8   IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEE 67
           IGIDPG  +TG   +         +           SL      +    T+   +     
Sbjct: 7   IGIDPG--KTGAAALITDEGTHEILDY-----PGDPSL------IVAKFTEWKLHHHIVM 53

Query: 68  AAVEQVFVN--KDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGV--GHGDK 123
            A+E+V     +  V+    G+         +   IP     P   ++ +I    G   K
Sbjct: 54  VALEKVSARPGQGVVSMFSFGRNLGTWEGIISAFGIPFMMPTPRQWQQGLIDQKAGGDPK 113

Query: 124 KQIHMMLKMLMPESFF--KGKDA-ADALAIA 151
            +     + L P++    K     ADAL +A
Sbjct: 114 ARSLNTARRLFPDAELSRKKDHGRADALLMA 144


>gi|300725196|ref|YP_003714524.1| protein yhgF [Xenorhabdus nematophila ATCC 19061]
 gi|297631741|emb|CBJ92460.1| Protein yhgF [Xenorhabdus nematophila ATCC 19061]
          Length = 783

 Score = 38.8 bits (90), Expect = 0.24,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 34/87 (39%), Gaps = 23/87 (26%)

Query: 1   MRKSIRIIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTD 58
           MR ++   G+DPGLR TG    +VD  G     +++ TI     Q       +    +  
Sbjct: 325 MRATM---GLDPGLR-TGVKVAVVDATG---KLIATDTIYPHTGQE-----NKAAASVAA 372

Query: 59  VIKNWRPEEAAV---------EQVFVN 76
           +    + E  A+         E+ F N
Sbjct: 373 LCTRHQVELVAIGNGTASRETERFFAN 399


>gi|160934895|ref|ZP_02082281.1| hypothetical protein CLOLEP_03770 [Clostridium leptum DSM 753]
 gi|156866348|gb|EDO59720.1| hypothetical protein CLOLEP_03770 [Clostridium leptum DSM 753]
          Length = 722

 Score = 38.8 bits (90), Expect = 0.25,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 9/65 (13%)

Query: 8   IGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           +G+DPG R TG    +VD  G     + +G I     QS   R+ +    ++ +I+ ++ 
Sbjct: 317 MGLDPGYR-TGCKVAVVDATG---RVLDTGVIYPTHSQS---RVQEAKALVSRMIQKYQV 369

Query: 66  EEAAV 70
           E  A+
Sbjct: 370 EVIAI 374


>gi|198276801|ref|ZP_03209332.1| hypothetical protein BACPLE_03004 [Bacteroides plebeius DSM 17135]
 gi|198270326|gb|EDY94596.1| hypothetical protein BACPLE_03004 [Bacteroides plebeius DSM 17135]
          Length = 712

 Score = 38.8 bits (90), Expect = 0.25,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 9/67 (13%)

Query: 6   RIIGIDPGLRRTGWGIV--DVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           R++GIDPG R TG  +V  D  G     + +  I     +S      Q    +  +++ +
Sbjct: 317 RVMGIDPGFR-TGCKVVCLDAQG---TLLHNEAIYPHPPKSEYA---QAARKIVKLVEQY 369

Query: 64  RPEEAAV 70
           + E  A+
Sbjct: 370 KIEAIAI 376


>gi|222825124|dbj|BAH22281.1| hypothetical protein [Wolbachia endosymbiont of Cadra cautella]
          Length = 153

 Score = 38.8 bits (90), Expect = 0.25,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 2/55 (3%)

Query: 96  PALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESFFKGKDAADALAI 150
              + IP    +  TIK+ + G G+  K  +   ++           + AD+LA+
Sbjct: 84  CEESNIPYQGVSVKTIKRFITGKGNASKADVIEAVQE--KGFCPTDDNEADSLAL 136


>gi|222825058|dbj|BAH22216.1| hypothetical protein [Wolbachia endosymbiont of Cadra cautella]
          Length = 156

 Score = 38.8 bits (90), Expect = 0.25,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 2/55 (3%)

Query: 96  PALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESFFKGKDAADALAI 150
              + IP    +  TIK+ + G G+  K  +   ++           + AD+LA+
Sbjct: 87  CEESNIPYQGVSVKTIKRFITGKGNASKADVIEAVQE--KGFCPTDDNEADSLAL 139


>gi|220923479|ref|YP_002498781.1| putative bacteriophage-like protein [Methylobacterium nodulans ORS
           2060]
 gi|219948086|gb|ACL58478.1| putative bacteriophage-related protein [Methylobacterium nodulans
           ORS 2060]
          Length = 172

 Score = 38.8 bits (90), Expect = 0.26,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 42/141 (29%), Gaps = 13/141 (9%)

Query: 15  RRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEG-LTDVIKNWRPEEAAVEQV 73
            R GW      G        GT V         R    +   L D+I    P     E  
Sbjct: 13  TRCGWAC-GAPGSEPT---YGTKVLPSTGEDIGRFADAFNTWLLDMITLENPALIVFEAP 68

Query: 74  FVNKDAVATLKLGQ-ARAIA---ILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMM 129
            +      TL   +    +A        +  +   E    ++KK   G G  DK+ +   
Sbjct: 69  ILA--GQTTLATARKLTGLAWHTEFVCRVREVRCKEAHLQSVKKFFAGSGRADKEAMIAA 126

Query: 130 LKMLMPESFFKGKDAADALAI 150
            +        K  D ADAL +
Sbjct: 127 ARRFG--WAPKTSDEADALGL 145


>gi|149376223|ref|ZP_01893987.1| Transcriptional accessory protein [Marinobacter algicola DG893]
 gi|149359420|gb|EDM47880.1| Transcriptional accessory protein [Marinobacter algicola DG893]
          Length = 776

 Score = 38.8 bits (90), Expect = 0.26,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 9/65 (13%)

Query: 8   IGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           +G+DPGLR TG    I+D  G     V  G I     ++   +   + E L +  + +R 
Sbjct: 328 LGLDPGLR-TGVKVAIIDGTGQ---VVGHGGIFPHAPRNQWDQ--SI-EQLANWCRQYRI 380

Query: 66  EEAAV 70
           E  A+
Sbjct: 381 ELVAI 385


>gi|95931126|ref|ZP_01313851.1| RNA binding S1 [Desulfuromonas acetoxidans DSM 684]
 gi|95132816|gb|EAT14490.1| RNA binding S1 [Desulfuromonas acetoxidans DSM 684]
          Length = 747

 Score = 38.8 bits (90), Expect = 0.26,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 9/66 (13%)

Query: 7   IIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++GIDPGLR TG    +V   G    F+   TI    +++      Q    ++ +I+ + 
Sbjct: 350 VLGIDPGLR-TGSKLAVVSATG---AFLDHVTIYPHTQKAQQ---PQFSRQISALIEKYA 402

Query: 65  PEEAAV 70
            E  AV
Sbjct: 403 VEMVAV 408


>gi|845551|gb|AAA99046.1| ORF3 [Lactococcus phage bIL66]
          Length = 160

 Score = 38.8 bits (90), Expect = 0.27,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 61/160 (38%), Gaps = 26/160 (16%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLC--FVSSGTIVSCVRQSLAFRLCQLYEGLTD 58
           M K+   + ID     TG+       + L   +V  G+I     +    R   + +G+T+
Sbjct: 1   MSKA---LAIDFSTSNTGYAF----RNPLTNEYV-VGSIAGGKSKDPLERAKIIADGITE 52

Query: 59  VIKNWR-PEEAA-VEQVFVNKDAVATLKLGQARAIAI-LSPALARIPVSEYAPNT----- 110
           VI+++   +    +E+  +   +   + L +A    + +      I   +   +      
Sbjct: 53  VIEHYNLFDYFIYIEEPIITFKSKGNISLIRANGSFLGVMRNRHNIGYVDIPNSKWCGYH 112

Query: 111 -IKKAVIGVGHGDKKQIHMMLK--MLMPESFFKGKDAADA 147
            IK    G     K Q   +LK   ++P++     D ADA
Sbjct: 113 LIK----GKSALRKVQSIEILKSYNIVPDNDI-NDDQADA 147


>gi|328947116|ref|YP_004364453.1| Tex-like protein [Treponema succinifaciens DSM 2489]
 gi|328447440|gb|AEB13156.1| Tex-like protein [Treponema succinifaciens DSM 2489]
          Length = 784

 Score = 38.8 bits (90), Expect = 0.28,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 15/75 (20%)

Query: 1   MRKSI---RIIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEG 55
           M + I   R++G+DPG+R TG     +D  G    ++    I        +      Y+ 
Sbjct: 329 MTQPIKGSRVLGVDPGIR-TGTKCAALDETG---KYLGYFLIKQVADPEGS------YKA 378

Query: 56  LTDVIKNWRPEEAAV 70
           + D I  +  +  AV
Sbjct: 379 INDAIDKYDIQVVAV 393


>gi|269123857|ref|YP_003306434.1| RNA binding S1 domain-containing protein [Streptobacillus
           moniliformis DSM 12112]
 gi|268315183|gb|ACZ01557.1| RNA binding S1 domain protein [Streptobacillus moniliformis DSM
           12112]
          Length = 762

 Score = 38.8 bits (90), Expect = 0.29,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 6/66 (9%)

Query: 7   IIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           I+G+DPG R TG    I+D  G    F  S  +          +L      +   +  + 
Sbjct: 322 ILGLDPGYR-TGAKLAIIDKDG---FFKESDVVYLVKEMHSEKQLETARNKILKYLSKYD 377

Query: 65  PEEAAV 70
            +  A+
Sbjct: 378 VDIVAI 383


>gi|118580106|ref|YP_901356.1| RNA-binding S1 domain-containing protein [Pelobacter propionicus
           DSM 2379]
 gi|118502816|gb|ABK99298.1| RNA binding S1 domain protein [Pelobacter propionicus DSM 2379]
          Length = 723

 Score = 38.8 bits (90), Expect = 0.29,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 9/67 (13%)

Query: 6   RIIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           R++GIDPG R TG     +D  G  +  V   TI     +    R+ Q  + L  +++ +
Sbjct: 325 RVLGIDPGFR-TGSKLAALDATGRFMEHV---TIYPHTGE---ARIHQARQELLRLVETF 377

Query: 64  RPEEAAV 70
             E  AV
Sbjct: 378 DIEMIAV 384


>gi|323483777|ref|ZP_08089157.1| hypothetical protein HMPREF9474_00906 [Clostridium symbiosum
          WAL-14163]
 gi|323692750|ref|ZP_08106978.1| hypothetical protein HMPREF9475_01841 [Clostridium symbiosum
          WAL-14673]
 gi|323402968|gb|EGA95286.1| hypothetical protein HMPREF9474_00906 [Clostridium symbiosum
          WAL-14163]
 gi|323503192|gb|EGB19026.1| hypothetical protein HMPREF9475_01841 [Clostridium symbiosum
          WAL-14673]
          Length = 163

 Score = 38.8 bits (90), Expect = 0.30,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 33/66 (50%), Gaps = 6/66 (9%)

Query: 5  IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
          +R++G+D G + TG  +     D L F + G + +  R+    +L +    + ++I+ ++
Sbjct: 15 MRVLGLDFGSKTTGVAV----SDPLGFTAQG-LETITRED-ENKLRRTCARIEELIREYQ 68

Query: 65 PEEAAV 70
           E   +
Sbjct: 69 IETIVL 74


>gi|218130719|ref|ZP_03459523.1| hypothetical protein BACEGG_02310 [Bacteroides eggerthii DSM 20697]
 gi|217987063|gb|EEC53394.1| hypothetical protein BACEGG_02310 [Bacteroides eggerthii DSM 20697]
          Length = 711

 Score = 38.8 bits (90), Expect = 0.30,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 9/67 (13%)

Query: 6   RIIGIDPGLRRTGWGIV--DVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           R++GIDPG R TG  +V  D  G+    + +  I      + +    + +  L  +I+ +
Sbjct: 315 RVMGIDPGFR-TGCKVVCLDAQGN---LLHNENIYPHPPVNQS---KEAFAKLQKMIEAY 367

Query: 64  RPEEAAV 70
           + E  A+
Sbjct: 368 KIEAIAI 374


>gi|317474257|ref|ZP_07933533.1| hypothetical protein HMPREF1016_00512 [Bacteroides eggerthii
           1_2_48FAA]
 gi|316909567|gb|EFV31245.1| hypothetical protein HMPREF1016_00512 [Bacteroides eggerthii
           1_2_48FAA]
          Length = 711

 Score = 38.4 bits (89), Expect = 0.30,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 9/67 (13%)

Query: 6   RIIGIDPGLRRTGWGIV--DVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           R++GIDPG R TG  +V  D  G+    + +  I      + +    + +  L  +I+ +
Sbjct: 315 RVMGIDPGFR-TGCKVVCLDAQGN---LLHNENIYPHPPVNQS---KEAFAKLQKMIEAY 367

Query: 64  RPEEAAV 70
           + E  A+
Sbjct: 368 KIEAIAI 374


>gi|295402568|ref|ZP_06812517.1| Tex-like protein-like protein [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|294975416|gb|EFG51045.1| Tex-like protein-like protein [Geobacillus thermoglucosidasius
           C56-YS93]
          Length = 728

 Score = 38.4 bits (89), Expect = 0.31,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 9/66 (13%)

Query: 7   IIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++GIDP  R TG    +VD  G     +    I     Q    R+ +  E L  +I+ + 
Sbjct: 322 VLGIDPAYR-TGCKLAVVDETG---KLLKIDVIYPHPPQP---RIEEAKEKLIRMIEEYN 374

Query: 65  PEEAAV 70
            E  A+
Sbjct: 375 VEMIAI 380


>gi|296446027|ref|ZP_06887976.1| CRISPR-associated protein, Csn1 family [Methylosinus
          trichosporium OB3b]
 gi|296256386|gb|EFH03464.1| CRISPR-associated protein, Csn1 family [Methylosinus
          trichosporium OB3b]
          Length = 1082

 Score = 38.4 bits (89), Expect = 0.32,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 22/34 (64%)

Query: 5  IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIV 38
          +R++G+D G+   GW ++++   N   +S GTI+
Sbjct: 1  MRVLGLDAGIASLGWALIEIEESNRGELSQGTII 34


>gi|312112520|ref|YP_003990836.1| Tex-like protein [Geobacillus sp. Y4.1MC1]
 gi|311217621|gb|ADP76225.1| Tex-like protein [Geobacillus sp. Y4.1MC1]
          Length = 728

 Score = 38.4 bits (89), Expect = 0.33,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 9/66 (13%)

Query: 7   IIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++GIDP  R TG    +VD  G     +    I     Q    R+ +  E L  +I+ + 
Sbjct: 322 VLGIDPAYR-TGCKLAVVDETG---KLLKIDVIYPHPPQP---RIEEAKEKLIRMIEEYN 374

Query: 65  PEEAAV 70
            E  A+
Sbjct: 375 VEMIAI 380


>gi|120553401|ref|YP_957752.1| RNA-binding S1 domain-containing protein [Marinobacter aquaeolei
           VT8]
 gi|120323250|gb|ABM17565.1| RNA binding S1 domain protein [Marinobacter aquaeolei VT8]
          Length = 774

 Score = 38.4 bits (89), Expect = 0.35,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 9/65 (13%)

Query: 8   IGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           +G+DPGLR TG    ++D  G     V  G I     Q+   +   + + +    + ++ 
Sbjct: 328 LGLDPGLR-TGVKVAVIDGTGQ---VVDHGAIFPHAPQNKWDQ--SIAQ-MAAWCQKYKI 380

Query: 66  EEAAV 70
           E  A+
Sbjct: 381 ELVAI 385


>gi|291529653|emb|CBK95239.1| hypothetical protein ERE_35000 [Eubacterium rectale M104/1]
          Length = 163

 Score = 38.4 bits (89), Expect = 0.35,   Method: Composition-based stats.
 Identities = 16/97 (16%), Positives = 34/97 (35%), Gaps = 8/97 (8%)

Query: 54  EGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNT--- 110
           E L   +   +P+   +E V   K+      L +  A       +      E+ P+    
Sbjct: 51  ETLLGFLDRIKPDIIVIEDVPFKKNIKTYKLLQRTIATVETWAMMHDTTFWEFTPSQWHS 110

Query: 111 -IKKAVIGVGHGDKKQIHMMLKMLMPESFFKGKDAAD 146
            +K A  G     K++   + +  + ++     D +D
Sbjct: 111 LVKDA--GEKVPRKRE--ELKQWSIGKTGISQDDISD 143


>gi|126666739|ref|ZP_01737716.1| hypothetical protein MELB17_19836 [Marinobacter sp. ELB17]
 gi|126628784|gb|EAZ99404.1| hypothetical protein MELB17_19836 [Marinobacter sp. ELB17]
          Length = 434

 Score = 38.4 bits (89), Expect = 0.35,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 9/58 (15%)

Query: 1  MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTD 58
          + + +RI  IDPG + TG  +V   G     ++           LA R  Q+ + L  
Sbjct: 36 ITQPVRI-KIDPGSKTTGIAVVRENGQKQHVLAL--------MELAHRGRQISKSLEQ 84


>gi|34557790|ref|NP_907605.1| hypothetical protein WS1445 [Wolinella succinogenes DSM 1740]
 gi|34483507|emb|CAE10505.1| conserved hypothetical protein [Wolinella succinogenes]
          Length = 1059

 Score = 38.4 bits (89), Expect = 0.35,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 20/49 (40%), Gaps = 8/49 (16%)

Query: 6  RIIGIDPGLRRTGWGIVDVAGDN---LCFVSSGT-----IVSCVRQSLA 46
          RI+G+D G+   GW IV+   D+      +  G        +  ++   
Sbjct: 4  RILGVDLGISSLGWAIVEYDKDDEAANRIIDCGVRLFTAAETPKKKESP 52


>gi|317471885|ref|ZP_07931220.1| hypothetical protein HMPREF1011_01569 [Anaerostipes sp.
          3_2_56FAA]
 gi|316900658|gb|EFV22637.1| hypothetical protein HMPREF1011_01569 [Anaerostipes sp.
          3_2_56FAA]
          Length = 138

 Score = 38.4 bits (89), Expect = 0.37,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 38/82 (46%), Gaps = 13/82 (15%)

Query: 5  IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
          +RI+G+D G +  G  + D  G     +++    +  R+    +L + Y  + +++  ++
Sbjct: 1  MRILGLDYGTKTVGVALSDELG-----ITAQPFETITRKD-ENKLRKTYARIEEIVAEYK 54

Query: 65 PEEAAVEQVFVN--KDAVATLK 84
               VE++ +   K+   T+ 
Sbjct: 55 -----VEKIVLGYPKNMNNTIG 71


>gi|332884082|gb|EGK04362.1| hypothetical protein HMPREF9456_01390 [Dysgonomonas mossii DSM
           22836]
          Length = 708

 Score = 38.4 bits (89), Expect = 0.37,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 15/70 (21%)

Query: 6   RIIGIDPGLRRTGWGIV--DVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEG---LTDVI 60
           R++GIDPG R TG  +V  D  G+    + + TI     Q       ++ +    +  ++
Sbjct: 315 RVLGIDPGYR-TGCKLVCLDAEGN---LLHNETIYPHPPQ------KEISKAGSKIVKLV 364

Query: 61  KNWRPEEAAV 70
             +  +  A+
Sbjct: 365 TTYNIDAIAI 374


>gi|167628523|ref|YP_001679022.1| hypothetical protein HM1_0392 [Heliobacterium modesticaldum Ice1]
 gi|167591263|gb|ABZ83011.1| conserved domain protein [Heliobacterium modesticaldum Ice1]
          Length = 729

 Score = 38.4 bits (89), Expect = 0.38,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 12/75 (16%)

Query: 1   MRKSI---RIIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEG 55
           M+  I   R++GIDPG R TG  W  +   G     +  G I          R  +    
Sbjct: 315 MQPPIGRRRVLGIDPGFR-TGCKWAALTETG---SLLEVGVIYPH---EPQKRWEEAKGN 367

Query: 56  LTDVIKNWRPEEAAV 70
           L  ++K    E  A+
Sbjct: 368 LCQIVKKHGIELIAI 382


>gi|126667875|ref|ZP_01738841.1| hypothetical protein MELB17_08019 [Marinobacter sp. ELB17]
 gi|126627691|gb|EAZ98322.1| hypothetical protein MELB17_08019 [Marinobacter sp. ELB17]
          Length = 434

 Score = 38.4 bits (89), Expect = 0.39,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 9/58 (15%)

Query: 1  MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTD 58
          + + +RI  IDPG + TG  +V   G     ++           LA R  Q+ + L  
Sbjct: 36 ITQPVRI-KIDPGSKTTGIAVVRENGQKQHVLAL--------MELAHRGRQISKSLEQ 84


>gi|294673353|ref|YP_003573969.1| S1 RNA binding domain-containing protein [Prevotella ruminicola 23]
 gi|294474298|gb|ADE83687.1| S1 RNA binding domain protein [Prevotella ruminicola 23]
          Length = 731

 Score = 38.4 bits (89), Expect = 0.39,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 9/67 (13%)

Query: 6   RIIGIDPGLRRTGWGIV--DVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           R++GIDPG R TG  +V  D  G+    +    I+      +  R       L  +I+ +
Sbjct: 318 RVLGIDPGFR-TGCKVVCLDAQGN---LLHHDVIMPHP--PVNKRTEA-AITLQRLIQKF 370

Query: 64  RPEEAAV 70
           + E  ++
Sbjct: 371 QIEAISI 377


>gi|313673962|ref|YP_004052073.1| tex-like protein [Calditerrivibrio nitroreducens DSM 19672]
 gi|312940718|gb|ADR19910.1| Tex-like protein [Calditerrivibrio nitroreducens DSM 19672]
          Length = 710

 Score = 38.0 bits (88), Expect = 0.40,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 29/75 (38%), Gaps = 12/75 (16%)

Query: 1   MRKSIR---IIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEG 55
           M   ++   I+GIDP  R TG  +  VD  G     +  G I     Q+      +    
Sbjct: 303 MTPPVKNISILGIDPAFR-TGCKFAAVDPTG---KVLEYGVIYPTEPQNDYENSKK---R 355

Query: 56  LTDVIKNWRPEEAAV 70
           + D+IK       A+
Sbjct: 356 ILDLIKKHNINAIAI 370


>gi|300726999|ref|ZP_07060419.1| S1 RNA binding domain protein [Prevotella bryantii B14]
 gi|299775722|gb|EFI72312.1| S1 RNA binding domain protein [Prevotella bryantii B14]
          Length = 703

 Score = 38.0 bits (88), Expect = 0.41,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 12/67 (17%)

Query: 6   RIIGIDPGLRRTGWGI--VDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           R++G+DPG+R TG  I  +D  G+    +         ++  A R       L  ++ ++
Sbjct: 313 RVLGVDPGIR-TGCKIVCIDAQGN---LLHHEVAHIANQRDTAER------QLVKLVNDY 362

Query: 64  RPEEAAV 70
           + E  A+
Sbjct: 363 KLEAIAI 369


>gi|294777759|ref|ZP_06743206.1| S1 RNA binding domain protein [Bacteroides vulgatus PC510]
 gi|294448403|gb|EFG16956.1| S1 RNA binding domain protein [Bacteroides vulgatus PC510]
          Length = 709

 Score = 38.0 bits (88), Expect = 0.41,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 9/67 (13%)

Query: 6   RIIGIDPGLRRTGWGIV--DVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           R++G+DPG R TG  IV  D  G     + + TI     ++      Q    +  +++ +
Sbjct: 314 RVMGVDPGYR-TGCKIVCLDAQG---SLLHNETIYPHPPKNEYS---QAARSIVKLVEQY 366

Query: 64  RPEEAAV 70
           + E  A+
Sbjct: 367 QIEAIAI 373


>gi|282598912|ref|YP_003358462.1| N4 gp46-like protein [Pseudomonas phage LIT1]
 gi|259048672|emb|CAZ66321.1| N4 gp46-like protein [Pseudomonas phage LIT1]
          Length = 186

 Score = 38.0 bits (88), Expect = 0.41,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 58/177 (32%), Gaps = 30/177 (16%)

Query: 7   IIGIDPGLRRTGWGIV----DVAGDNLCFVSSGTIVSCVRQSLAFRLC--------QLYE 54
           ++G+DP +    WG+     D   + L       I +   +    R+         ++  
Sbjct: 6   VVGMDPSMSN--WGLACGQYDTTSNTLSLRHIEVIKTSKTKDKQIRVNSDDLNRSTEITT 63

Query: 55  GLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALA-RIPVSEYAPNTIKK 113
            + +VIK          +V V   + A +K      I ILS   A   P     P  +K 
Sbjct: 64  RVMEVIKEANVIFV---EVPVGSQSAAAMK-SYGMCIGILSAVRASGKPFHLLTPTDLKV 119

Query: 114 AVIGVGHGDKKQIHM-MLKMLMPESFF----------KGKDAADALAIAVCHAYHAN 159
                    K+ +    +K     ++           + +  ADA A A    +H N
Sbjct: 120 MACNSKTASKEAMIEWAVKKYPHLNWPMTPKGEVIASRAEHMADACAAAEYGVFHHN 176


>gi|254884274|ref|ZP_05256984.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|319640643|ref|ZP_07995359.1| RNA-binding protein [Bacteroides sp. 3_1_40A]
 gi|254837067|gb|EET17376.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|317387706|gb|EFV68569.1| RNA-binding protein [Bacteroides sp. 3_1_40A]
          Length = 709

 Score = 38.0 bits (88), Expect = 0.41,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 9/67 (13%)

Query: 6   RIIGIDPGLRRTGWGIV--DVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           R++G+DPG R TG  IV  D  G     + + TI     ++      Q    +  +++ +
Sbjct: 314 RVMGVDPGYR-TGCKIVCLDAQG---SLLHNETIYPHPPKNEYS---QAARSIVKLVEQY 366

Query: 64  RPEEAAV 70
           + E  A+
Sbjct: 367 QIEAIAI 373


>gi|15639909|ref|NP_219359.1| tex protein (tex) [Treponema pallidum subsp. pallidum str. Nichols]
 gi|3323244|gb|AAC65881.1| tex protein (tex) [Treponema pallidum subsp. pallidum str. Nichols]
          Length = 778

 Score = 38.0 bits (88), Expect = 0.41,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 13/70 (18%)

Query: 3   KSIRIIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           K  R++GIDPG+R TG     +D  G    ++ S  I        A         LT  +
Sbjct: 330 KGTRVLGIDPGIR-TGTKCAALDETGQ---YLGSFVIY-PHNTDHAR------AALTQAL 378

Query: 61  KNWRPEEAAV 70
             +R +  AV
Sbjct: 379 DRYRIQLVAV 388


>gi|329121339|ref|ZP_08249965.1| ribonuclease RNase H fold domain protein [Dialister
          micraerophilus DSM 19965]
 gi|327469748|gb|EGF15214.1| ribonuclease RNase H fold domain protein [Dialister
          micraerophilus DSM 19965]
          Length = 144

 Score = 38.0 bits (88), Expect = 0.42,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 13/64 (20%)

Query: 7  IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
          I+ IDPG  +TG  +V   G+    V    I +        RL    E +  + K     
Sbjct: 2  ILSIDPGSEKTGIAVVKKDGN---LVMKKIIKT-------ERLE---EEIKTLTKKIEIT 48

Query: 67 EAAV 70
          E A+
Sbjct: 49 ETAI 52


>gi|32401128|gb|AAP80756.1| ORF L2 [Lactococcus phage 923]
          Length = 93

 Score = 38.0 bits (88), Expect = 0.42,   Method: Composition-based stats.
 Identities = 14/93 (15%), Positives = 34/93 (36%), Gaps = 13/93 (13%)

Query: 6  RIIGIDPGLRR-----TGWGIVDVAGDNLCFVSSGTIVS-CVRQSLAFRLCQLYEGLTDV 59
          +I+ ID          TG+      G     +  G+I +   +++   R   +   + D+
Sbjct: 3  KILAIDFSTASKKDEGTGYAF-RKDGQ----LYVGSIKAYNAKKNAWERTFDIVNAIKDI 57

Query: 60 IKNW--RPEEAAVEQVFVNKDAVATLKLGQARA 90
          I  +  +    A+E   + ++   ++ L     
Sbjct: 58 IDEFDLKDYHMAIETPIMGRNRKHSITLANCNG 90


>gi|9631339|ref|NP_048177.1| ORF MSV106 putative vaccinia A22R homolog, similar to SW:P20997
          [Melanoplus sanguinipes entomopoxvirus]
 gi|4049692|gb|AAC97652.1| ORF MSV106 putative vaccinia A22R homolog, similar to SW:P20997
          [Melanoplus sanguinipes entomopoxvirus]
          Length = 163

 Score = 38.0 bits (88), Expect = 0.42,   Method: Composition-based stats.
 Identities = 12/65 (18%), Positives = 30/65 (46%), Gaps = 8/65 (12%)

Query: 5  IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQ---SLAFRLCQLY--EGLTDV 59
          + I+GID G++  G  I+++  +    +    I + + +   S+   L  +Y  + +  V
Sbjct: 1  MNILGIDVGIKNLGLCIINIKDNKYNII---CIKTDISKLNYSILDNLYNIYKLDKMDIV 57

Query: 60 IKNWR 64
          +   +
Sbjct: 58 LIEHQ 62


>gi|239627761|ref|ZP_04670792.1| conserved hypothetical protein [Clostridiales bacterium
          1_7_47_FAA]
 gi|239517907|gb|EEQ57773.1| conserved hypothetical protein [Clostridiales bacterium
          1_7_47FAA]
          Length = 150

 Score = 38.0 bits (88), Expect = 0.44,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 38/83 (45%), Gaps = 13/83 (15%)

Query: 4  SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
          ++RI+G+D G +  G  + D  G     +++ T+ +  R+    +L Q    +  +I  +
Sbjct: 2  NMRIMGLDFGSKTVGVAVCDPLG-----ITAQTVETITRKD-ENKLRQTLARIEALIGQY 55

Query: 64 RPEEAAVEQVFVN--KDAVATLK 84
                +E++ +   K+   TL 
Sbjct: 56 E-----IERIVLGYPKNMNNTLG 73


>gi|319902565|ref|YP_004162293.1| Tex-like protein [Bacteroides helcogenes P 36-108]
 gi|319417596|gb|ADV44707.1| Tex-like protein [Bacteroides helcogenes P 36-108]
          Length = 713

 Score = 38.0 bits (88), Expect = 0.46,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 31/67 (46%), Gaps = 9/67 (13%)

Query: 6   RIIGIDPGLRRTGWGIV--DVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           R++GIDPG R TG  +V  D  G+    + +  I      +      + +  L  +++ +
Sbjct: 315 RVMGIDPGFR-TGCKVVCLDAQGN---LLHNENIYPHPPVNKG---KEAFSKLQKMMEAY 367

Query: 64  RPEEAAV 70
           + +  A+
Sbjct: 368 KIDAIAI 374


>gi|229542549|ref|ZP_04431609.1| RNA binding S1 domain protein [Bacillus coagulans 36D1]
 gi|229326969|gb|EEN92644.1| RNA binding S1 domain protein [Bacillus coagulans 36D1]
          Length = 725

 Score = 38.0 bits (88), Expect = 0.46,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 9/66 (13%)

Query: 7   IIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++G+DP  R TG    +VD  G  L     G I     +        +   +  +I++++
Sbjct: 327 VLGVDPAYR-TGCKLAVVDETGKVLKI---GVIYPHPPKPKTEEAKAI---VKSIIRDFK 379

Query: 65  PEEAAV 70
            E  A+
Sbjct: 380 VEVIAI 385


>gi|86136188|ref|ZP_01054767.1| hypothetical protein MED193_18734 [Roseobacter sp. MED193]
 gi|85827062|gb|EAQ47258.1| hypothetical protein MED193_18734 [Roseobacter sp. MED193]
          Length = 299

 Score = 38.0 bits (88), Expect = 0.47,   Method: Composition-based stats.
 Identities = 33/152 (21%), Positives = 53/152 (34%), Gaps = 22/152 (14%)

Query: 8   IGIDPGLRRTGWGIVDVAGDNLCFVSSGT--IVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           + +D G   TGW +    G     ++SGT    +        R  +    L ++ +   P
Sbjct: 149 LALDLGTT-TGWALHGADG----LITSGTASFRNGRFDGGGMRYLRFTNWLGELERLSGP 203

Query: 66  EEAAV--EQVFVNKDAVATLKLGQARAIAILS----PALARIPVSEYAPNTIKKAVIGVG 119
             AA+  E+V       A           + +      L  +P       TIK+   G G
Sbjct: 204 -IAAIWFEEV----RRHAGTDAAHVYGGLMATLTAWAELRGVPYEGVPVGTIKRHATGKG 258

Query: 120 HGDKKQIHMMLKMLMPESFFKGKD-AADALAI 150
           + +K     M+       F    D  ADA+AI
Sbjct: 259 NANKD---AMIAAARARGFSPVDDNEADAIAI 287


>gi|260172929|ref|ZP_05759341.1| CRISPR-associated endonuclease Csn1 family protein [Bacteroides
          sp. D2]
 gi|315921212|ref|ZP_07917452.1| crispr-associated endonuclease csn1 family protein [Bacteroides
          sp. D2]
 gi|313695087|gb|EFS31922.1| crispr-associated endonuclease csn1 family protein [Bacteroides
          sp. D2]
          Length = 1510

 Score = 38.0 bits (88), Expect = 0.50,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 7/44 (15%)

Query: 6  RIIGIDPGLRRTGWGIVDVA-------GDNLCFVSSGTIVSCVR 42
          RI+G+D G    GW +VD         G  +  +  G + +   
Sbjct: 3  RILGLDLGTNSIGWALVDSEEQRILGMGSRIIPMDQGVLDTFSG 46


>gi|302385313|ref|YP_003821135.1| Holliday junction resolvase YqgF [Clostridium saccharolyticum
          WM1]
 gi|302195941|gb|ADL03512.1| Holliday junction resolvase YqgF [Clostridium saccharolyticum
          WM1]
          Length = 146

 Score = 38.0 bits (88), Expect = 0.50,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 32/66 (48%), Gaps = 6/66 (9%)

Query: 5  IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
          +RI+G+D G +  G  + D+ G     +++  + +  R+    +L +    + ++I+ + 
Sbjct: 1  MRIMGLDYGSKTVGVAVSDLLG-----ITAQGVETITREE-ENKLRKTCARIEELIREYE 54

Query: 65 PEEAAV 70
           E   +
Sbjct: 55 IETIIL 60


>gi|239825786|ref|YP_002948410.1| RNA binding S1 domain protein [Geobacillus sp. WCH70]
 gi|239806079|gb|ACS23144.1| RNA binding S1 domain protein [Geobacillus sp. WCH70]
          Length = 728

 Score = 38.0 bits (88), Expect = 0.51,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 9/66 (13%)

Query: 7   IIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++GIDP  R TG    +VD  G     +    I          ++ +  E L  +I+ + 
Sbjct: 322 VLGIDPAYR-TGCKLAVVDETG---KLLKIDVIYPH---PPQQQIEEAREKLIRIIEEYH 374

Query: 65  PEEAAV 70
            E  A+
Sbjct: 375 VEMIAI 380


>gi|89896725|ref|YP_520212.1| hypothetical protein DSY3979 [Desulfitobacterium hafniense Y51]
 gi|89336173|dbj|BAE85768.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 721

 Score = 37.6 bits (87), Expect = 0.53,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 9/66 (13%)

Query: 7   IIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++G+DPG R TG  + +VD  G        G I     Q+      ++   L D I  ++
Sbjct: 314 VLGLDPGFR-TGCKFAVVDDTG---KLFHVGVIYPHPPQNKREEAKKV---LRDTIAKYQ 366

Query: 65  PEEAAV 70
            E  A+
Sbjct: 367 VEVIAI 372


>gi|255020313|ref|ZP_05292381.1| hypothetical protein ACA_2131 [Acidithiobacillus caldus ATCC 51756]
 gi|254970233|gb|EET27727.1| hypothetical protein ACA_2131 [Acidithiobacillus caldus ATCC 51756]
          Length = 155

 Score = 37.6 bits (87), Expect = 0.53,   Method: Composition-based stats.
 Identities = 29/153 (18%), Positives = 46/153 (30%), Gaps = 22/153 (14%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRL---CQLYEGLTDVIKNW 63
           I+ +D G+  TGW ++            G I          R       +      + + 
Sbjct: 5   ILALDLGIT-TGWALLGRD---------GLISGGSESFRPQRFEGGGMRFLRFKRWLADI 54

Query: 64  R-----PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGV 118
           +      +    E+V  +    A    G   A          IP       TIK+   G 
Sbjct: 55  KRCADGIDWVVFEEVRKHAGVDAAHAYGGFLATLTSWCEHHGIPYQGVPVGTIKRHATGR 114

Query: 119 GHGDKKQIHMMLKMLMPESFFKGKDA-ADALAI 150
           G+ +K     M+            D  ADALA+
Sbjct: 115 GNANK---AEMIAAAKARGITPVDDNHADALAL 144


>gi|225387769|ref|ZP_03757533.1| hypothetical protein CLOSTASPAR_01539 [Clostridium asparagiforme
           DSM 15981]
 gi|225046130|gb|EEG56376.1| hypothetical protein CLOSTASPAR_01539 [Clostridium asparagiforme
           DSM 15981]
          Length = 151

 Score = 37.6 bits (87), Expect = 0.53,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 46/103 (44%), Gaps = 15/103 (14%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+G+D G +  G  + D  G     +++ T+ + VR+    +L +    + ++I  + 
Sbjct: 1   MRIMGLDYGSKTVGVAVCDPLG-----ITAQTVETIVRKD-ENKLRKTLARIEELIGAYE 54

Query: 65  PEEAAVEQVFVN--KDAVATLKLGQARAIAILSPALA--RIPV 103
                +E++ +   K+   T+     +A  + +       +PV
Sbjct: 55  -----IERIVLGYPKNMNNTVGERAQKAEELKAALERRTGLPV 92


>gi|223938472|ref|ZP_03630365.1| Resolvase RNase H domain protein [bacterium Ellin514]
 gi|223892891|gb|EEF59359.1| Resolvase RNase H domain protein [bacterium Ellin514]
          Length = 617

 Score = 37.6 bits (87), Expect = 0.54,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 31/69 (44%), Gaps = 7/69 (10%)

Query: 2   RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
           +K++  + IDPG R TG  +V +       +    +      S   R+ +  + +  +++
Sbjct: 317 QKNM--LAIDPGFR-TGCKVVCLD-RQGKLLHHDVVYPSQSDS---RIREAADAIRSMVQ 369

Query: 62  NWRPEEAAV 70
            ++ E  A+
Sbjct: 370 KFQIEAIAI 378


>gi|219667445|ref|YP_002457880.1| RNA binding S1 domain protein [Desulfitobacterium hafniense DCB-2]
 gi|219537705|gb|ACL19444.1| RNA binding S1 domain protein [Desulfitobacterium hafniense DCB-2]
          Length = 721

 Score = 37.6 bits (87), Expect = 0.54,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 9/66 (13%)

Query: 7   IIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++G+DPG R TG  + +VD  G        G I     Q+      ++   L D I  ++
Sbjct: 314 VLGLDPGFR-TGCKFAVVDDTG---KLFHVGVIYPHPPQNKREEAKKV---LRDTIAKYQ 366

Query: 65  PEEAAV 70
            E  A+
Sbjct: 367 VEVIAI 372


>gi|253690273|ref|YP_003019463.1| RNA binding S1 domain protein [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251756851|gb|ACT14927.1| RNA binding S1 domain protein [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 777

 Score = 37.6 bits (87), Expect = 0.57,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 14/72 (19%)

Query: 1   MRKSIRIIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTD 58
           MR ++   G+DPGLR TG    +VD  G     V++ TI     Q+      +    +  
Sbjct: 325 MRATM---GLDPGLR-TGVKVAVVDATG---KLVATDTIYPHTGQA-----AKAATSVAT 372

Query: 59  VIKNWRPEEAAV 70
           + + ++ E  A+
Sbjct: 373 LCRKYQVELVAI 384


>gi|119952222|ref|YP_950524.1| gp46 [Enterobacteria phage N4]
 gi|117650941|gb|ABK54414.1| gp46 [Enterobacteria phage N4]
          Length = 185

 Score = 37.6 bits (87), Expect = 0.57,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 56/169 (33%), Gaps = 25/169 (14%)

Query: 7   IIGIDPGLRRTGW--GIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQ--------LYEGL 56
           ++G+DP  R  G   G++D+    L  +    + +    +   R           +  G+
Sbjct: 5   VLGVDPSFRNWGLARGMLDLETGILSGLDLKLVETKPDGTKQVRQNSKDMQAAEDITAGV 64

Query: 57  TDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVI 116
            D  K  +     VE    ++ A      G      + +       + E  P   K A+ 
Sbjct: 65  IDWFKEAK--VIFVEVPVGSQSANGMKSYGVCVG-ILGALRALGHEIIEVTPIENKVALS 121

Query: 117 GVGHGDKKQIHMMLKMLMPES----------FFKGKDAADALAIAVCHA 155
           G+    K  +        PE+            K +  ADA+  A+ HA
Sbjct: 122 GIKTASKDVMIRAATGFYPEANWLKDTKGRLLNKNEHLADAVG-AI-HA 168


>gi|145588432|ref|YP_001155029.1| Holliday junction resolvase YqgF [Polynucleobacter necessarius
          subsp. asymbioticus QLW-P1DMWA-1]
 gi|145046838|gb|ABP33465.1| Holliday junction resolvase YqgF [Polynucleobacter necessarius
          subsp. asymbioticus QLW-P1DMWA-1]
          Length = 138

 Score = 37.6 bits (87), Expect = 0.59,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 32/70 (45%), Gaps = 9/70 (12%)

Query: 1  MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
          M KSI ++  D G RR G  +    G+++  +    + +    +       L+  +  ++
Sbjct: 1  MPKSITVMAFDYGTRRVGVAV----GNSVTQLG-QALKTIAAANSE----ILFLEVASLL 51

Query: 61 KNWRPEEAAV 70
          K W+P++  V
Sbjct: 52 KEWQPDQLVV 61


>gi|110633555|ref|YP_673763.1| hypothetical protein Meso_1202 [Mesorhizobium sp. BNC1]
 gi|110284539|gb|ABG62598.1| hypothetical protein Meso_1202 [Chelativorans sp. BNC1]
          Length = 183

 Score = 37.6 bits (87), Expect = 0.59,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 63/176 (35%), Gaps = 31/176 (17%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           + I+ +D    + GW  +         + SG+I      +   +   +   L  +I+  +
Sbjct: 1   MLILALDVAS-KLGWA-IHDTDKTPSAILSGSIKLEGSNAF-EKTQDMRRKLPKLIRQHQ 57

Query: 65  PEEAAVEQV------FVNK--------------DAVATLKLGQARAIAILSPALARIPVS 104
           P  AA+E        F  K              +A   ++L      A +      +P +
Sbjct: 58  PAFAAMEAPLTFIPQFKKKTRTLMAVEEETSTINANTIMQLNWLAGAAEMVVLGQNVPCT 117

Query: 105 EYAPNTIKKAVIGV---GHGDKKQIHMMLKMLMPESFFKGKDAADALAIAV-CHAY 156
             +P T  +++I     G   K++      ML  +S     D+ DA  IA+ C  +
Sbjct: 118 LVSPRT-WQSIIPYHIRG-APKQRAKAYCDMLRIDS--PNADSRDAAVIALWCAGH 169


>gi|160895347|ref|ZP_02076118.1| hypothetical protein CLOL250_02906 [Clostridium sp. L2-50]
 gi|156863040|gb|EDO56471.1| hypothetical protein CLOL250_02906 [Clostridium sp. L2-50]
          Length = 165

 Score = 37.6 bits (87), Expect = 0.61,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 38/82 (46%), Gaps = 9/82 (10%)

Query: 3  KSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
          K++RIIG+D G +  G  +      +   +++  + +  R+S A +L Q    +  +I+ 
Sbjct: 19 KNMRIIGLDYGTKTVGVAV-----SDALMITAQPLETIERKS-ANKLRQTLARIESIIEE 72

Query: 63 WRPEEAAVEQVFVNKDAVATLK 84
          ++ E      +   K+   T+ 
Sbjct: 73 YQAERIV---LGYPKNMNNTIG 91


>gi|302392906|ref|YP_003828726.1| Resolvase RNase H domain protein fold protein [Acetohalobium
          arabaticum DSM 5501]
 gi|302204983|gb|ADL13661.1| Resolvase RNase H domain protein fold protein [Acetohalobium
          arabaticum DSM 5501]
          Length = 127

 Score = 37.6 bits (87), Expect = 0.61,   Method: Composition-based stats.
 Identities = 10/65 (15%), Positives = 26/65 (40%), Gaps = 15/65 (23%)

Query: 7  IIGIDPGLRRTGWGI-VDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
          I+GIDPG  + G  + +D     +       + +           ++ + + ++I  +R 
Sbjct: 2  ILGIDPGRDKCGLALMIDKEEIEI----CEVVATD----------RILDRIEELIAEYRV 47

Query: 66 EEAAV 70
           +  +
Sbjct: 48 NKIVI 52


>gi|126667529|ref|ZP_01738499.1| hypothetical protein MELB17_15746 [Marinobacter sp. ELB17]
 gi|126627955|gb|EAZ98582.1| hypothetical protein MELB17_15746 [Marinobacter sp. ELB17]
          Length = 434

 Score = 37.6 bits (87), Expect = 0.61,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 9/56 (16%)

Query: 3  KSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTD 58
          + +RI  IDPG + TG  +V  +G     ++           LA R  Q+ + L  
Sbjct: 38 QPVRI-KIDPGSKTTGIAVVRESGQKQHALAL--------MELAHRGRQISKSLEQ 84


>gi|320157699|ref|YP_004190078.1| transcription accessory protein (S1 RNA-binding domain) [Vibrio
           vulnificus MO6-24/O]
 gi|319933011|gb|ADV87875.1| transcription accessory protein (S1 RNA-binding domain) [Vibrio
           vulnificus MO6-24/O]
          Length = 774

 Score = 37.6 bits (87), Expect = 0.62,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 9/65 (13%)

Query: 8   IGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           +G+DPGLR TG    +VD  G     +++ TI   V Q+   R  Q    +  +IK    
Sbjct: 329 LGLDPGLR-TGCKVAVVDATG---KVLATDTIYPHVPQNQYDRAMQ---TVAALIKQHNV 381

Query: 66  EEAAV 70
           +  A+
Sbjct: 382 DLIAI 386


>gi|189425601|ref|YP_001952778.1| RNA binding S1 domain protein [Geobacter lovleyi SZ]
 gi|189421860|gb|ACD96258.1| RNA binding S1 domain protein [Geobacter lovleyi SZ]
          Length = 762

 Score = 37.6 bits (87), Expect = 0.62,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 9/69 (13%)

Query: 4   SIRIIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
             R++GIDPGLR  G     VD  G  L  V   TI        A R+ Q    L  +++
Sbjct: 323 GRRVLGIDPGLR-AGSKLAAVDQTGRFLEHV---TIYPHTG---AGRVDQARADLLRLVE 375

Query: 62  NWRPEEAAV 70
               E  A+
Sbjct: 376 AHGIEMIAI 384


>gi|27364308|ref|NP_759836.1| transcription accessory protein [Vibrio vulnificus CMCP6]
 gi|27360426|gb|AAO09363.1| TRANSCRIPTION ACCESSORY PROTEIN (S1 RNA binding domain) [Vibrio
           vulnificus CMCP6]
          Length = 774

 Score = 37.6 bits (87), Expect = 0.63,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 9/65 (13%)

Query: 8   IGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           +G+DPGLR TG    +VD  G     +++ TI   V Q+   R  Q    +  +IK    
Sbjct: 329 LGLDPGLR-TGCKVAVVDATG---KVLATDTIYPHVPQNQYDRAMQ---TVAALIKQHNV 381

Query: 66  EEAAV 70
           +  A+
Sbjct: 382 DLIAI 386


>gi|37678418|ref|NP_933027.1| transcriptional accessory protein [Vibrio vulnificus YJ016]
 gi|37197157|dbj|BAC92998.1| transcriptional accessory protein [Vibrio vulnificus YJ016]
          Length = 763

 Score = 37.2 bits (86), Expect = 0.70,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 9/65 (13%)

Query: 8   IGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           +G+DPGLR TG    +VD  G     +++ TI   V Q+   R  Q    +  +IK    
Sbjct: 329 LGLDPGLR-TGCKVAVVDATG---KVLATDTIYPHVPQNQYDRAMQ---TVAALIKQHNV 381

Query: 66  EEAAV 70
           +  A+
Sbjct: 382 DLIAI 386


>gi|313202665|ref|YP_004041322.1| glucokinase [Paludibacter propionicigenes WB4]
 gi|312441981|gb|ADQ78337.1| glucokinase [Paludibacter propionicigenes WB4]
          Length = 320

 Score = 37.2 bits (86), Expect = 0.70,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 7  IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
          +IG+D G   T +GIVD  G+    +S   I +     +   +  ++  L+ +I+
Sbjct: 8  VIGMDMGGTNTVFGIVDTRGN---VISKSAIKTGTHTDVNLYINDIHAELSKLIE 59


>gi|237736431|ref|ZP_04566912.1| transcription accessory protein [Fusobacterium mortiferum ATCC
           9817]
 gi|229421473|gb|EEO36520.1| transcription accessory protein [Fusobacterium mortiferum ATCC
           9817]
          Length = 721

 Score = 37.2 bits (86), Expect = 0.70,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 30/75 (40%), Gaps = 9/75 (12%)

Query: 1   MRKSIR---IIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEG 55
           M+  ++   I+ +DPG R TG    I+D  G    ++ +             +L    + 
Sbjct: 310 MQAPLKEKSILALDPGYR-TGCKVAIIDKNG---FYIGNDVFFLVADMHTPKQLETAEKK 365

Query: 56  LTDVIKNWRPEEAAV 70
           + D +K +  +   +
Sbjct: 366 IVDYVKKYNIDIIVI 380


>gi|166031235|ref|ZP_02234064.1| hypothetical protein DORFOR_00922 [Dorea formicigenerans ATCC
          27755]
 gi|166029082|gb|EDR47839.1| hypothetical protein DORFOR_00922 [Dorea formicigenerans ATCC
          27755]
          Length = 144

 Score = 37.2 bits (86), Expect = 0.71,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 32/69 (46%), Gaps = 11/69 (15%)

Query: 5  IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
          +RI+G+D G R  G  + D  G     +++  + +  R+    +L +    + +++  + 
Sbjct: 1  MRIMGLDYGSRTVGVAVSDPLG-----ITAQAVETICRKD-ENKLRKTCARIEELVAEYE 54

Query: 65 PEEAAVEQV 73
               VE++
Sbjct: 55 -----VEKI 58


>gi|269965880|ref|ZP_06179973.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
 gi|269829433|gb|EEZ83674.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
          Length = 787

 Score = 37.2 bits (86), Expect = 0.71,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 9/65 (13%)

Query: 8   IGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           +G+DPGLR TG    +VD  G     +++ TI     Q    +  Q+   +  +++ +  
Sbjct: 343 LGLDPGLR-TGSKIAVVDSTG---KVLATETIYPHPPQKQYDKSAQI---VEQLVRKYNV 395

Query: 66  EEAAV 70
           +  A+
Sbjct: 396 DLIAI 400


>gi|311031560|ref|ZP_07709650.1| Holliday junction resolvase-like protein [Bacillus sp. m3-13]
          Length = 138

 Score = 37.2 bits (86), Expect = 0.72,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 7/66 (10%)

Query: 5  IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
          +RI+G+D G +  G  I D  G    + + G + +         L   ++ L  +I  ++
Sbjct: 1  MRILGLDVGSKTVGVAISDEMG----WTAQG-LETIKIDEAIKNLG--FKRLKQIIAEYK 53

Query: 65 PEEAAV 70
          PE+  V
Sbjct: 54 PEKVVV 59


>gi|226225422|ref|YP_002759528.1| transcription accessory protein [Gemmatimonas aurantiaca T-27]
 gi|226088613|dbj|BAH37058.1| transcription accessory protein [Gemmatimonas aurantiaca T-27]
          Length = 791

 Score = 37.2 bits (86), Expect = 0.73,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 13/67 (19%)

Query: 6   RIIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           R+IG+DPG R TG    +V   G     V + T+        A         +  +I+ +
Sbjct: 331 RVIGLDPGFR-TGVKVAVVSATG---ALVHTDTLYLHQEDRFAG-------AVRAMIERF 379

Query: 64  RPEEAAV 70
           +PE  A+
Sbjct: 380 KPELIAI 386


>gi|152978060|ref|YP_001343689.1| CRISPR-associated endonuclease Csn1 family protein
          [Actinobacillus succinogenes 130Z]
 gi|150839783|gb|ABR73754.1| CRISPR-associated protein, Csn1 family [Actinobacillus
          succinogenes 130Z]
          Length = 1062

 Score = 37.2 bits (86), Expect = 0.73,   Method: Composition-based stats.
 Identities = 8/32 (25%), Positives = 16/32 (50%), Gaps = 2/32 (6%)

Query: 7  IIGIDPGLRRTGWGIVDVA--GDNLCFVSSGT 36
          I+G+D G+   GW +V++    +    +  G 
Sbjct: 6  ILGLDLGIASVGWAVVEIDEQENPQRLIDVGV 37


>gi|212638590|ref|YP_002315110.1| RNase H-like ribonuclease [Anoxybacillus flavithermus WK1]
 gi|212560070|gb|ACJ33125.1| RNase H-like ribonuclease [Anoxybacillus flavithermus WK1]
          Length = 145

 Score = 37.2 bits (86), Expect = 0.74,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 38/87 (43%), Gaps = 15/87 (17%)

Query: 1  MR-KSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDV 59
          MR + +RI+G+D G +  G  +     D L + + G     + +         ++ L  +
Sbjct: 1  MRNRHMRILGLDFGTKTLGVAV----SDELGWTAQGIETIRIDEEHGE---YGFDRLRQL 53

Query: 60 IKNWRPEEAAVEQVFVN--KDAVATLK 84
          I+ +     AVE++ V   K+   T+ 
Sbjct: 54 IEQY-----AVEEIVVGFPKNMNGTIG 75


>gi|291563945|emb|CBL42761.1| conserved hypothetical protein TIGR00250 [butyrate-producing
           bacterium SS3/4]
          Length = 144

 Score = 37.2 bits (86), Expect = 0.75,   Method: Composition-based stats.
 Identities = 16/102 (15%), Positives = 41/102 (40%), Gaps = 11/102 (10%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+G+D G +  G  + D        +++  + +  R+    +L +    + ++I  + 
Sbjct: 1   MRILGLDFGSKTVGVAVSDG-----LLLTAQGVETIERKD-ENKLRKTCARIEELIAEYE 54

Query: 65  PEEAAVEQVFVNKDAVATLK--LGQARAIAILSPALARIPVS 104
             E     + + K+   T    + + +A   +      +PV 
Sbjct: 55  VTEIV---LGLPKNMDNTEGERVEKTKAFGEMLERRTGLPVH 93


>gi|307179348|gb|EFN67712.1| S1 RNA-binding domain-containing protein 1 [Camponotus floridanus]
          Length = 822

 Score = 37.2 bits (86), Expect = 0.75,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 29/65 (44%), Gaps = 7/65 (10%)

Query: 7   IIGIDPGLRR-TGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           I+GIDPG        ++   G+ L      T++   +  L+FR+    + +  ++  ++ 
Sbjct: 404 ILGIDPGFYHGCKLAVISEHGNILET----TVIHPHKNELSFRIA--ADSMVKLVNKYKC 457

Query: 66  EEAAV 70
              A+
Sbjct: 458 TVLAL 462


>gi|160946420|ref|ZP_02093629.1| hypothetical protein PEPMIC_00380 [Parvimonas micra ATCC 33270]
 gi|158447536|gb|EDP24531.1| hypothetical protein PEPMIC_00380 [Parvimonas micra ATCC 33270]
          Length = 697

 Score = 37.2 bits (86), Expect = 0.75,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 12/75 (16%)

Query: 1   MRKSI--RI-IGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEG 55
           M+  I  R+ +GIDPG R TG    ++   G  L  V+   I     Q    ++ +  E 
Sbjct: 307 MQSPILDRVVLGIDPGYR-TGCKVAVISKTGSVLDHVN---IYPTKPQ---EKIKESKEI 359

Query: 56  LTDVIKNWRPEEAAV 70
           L  +IK +     A+
Sbjct: 360 LAKLIKKYDVSLIAI 374


>gi|329954547|ref|ZP_08295638.1| Tex-like protein [Bacteroides clarus YIT 12056]
 gi|328527515|gb|EGF54512.1| Tex-like protein [Bacteroides clarus YIT 12056]
          Length = 713

 Score = 37.2 bits (86), Expect = 0.76,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 9/67 (13%)

Query: 6   RIIGIDPGLRRTGWGIV--DVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           R++GIDPG R TG  +V  D  G+    + +  I      +      + +  L  +I+ +
Sbjct: 315 RVMGIDPGFR-TGCKVVCLDAQGN---LLHNENIYPHPPVNQG---KEAFAKLQKMIEAY 367

Query: 64  RPEEAAV 70
           + E  A+
Sbjct: 368 KVEAIAI 374


>gi|313904440|ref|ZP_07837817.1| cobalamin synthesis protein P47K [Eubacterium cellulosolvens 6]
 gi|313470776|gb|EFR66101.1| cobalamin synthesis protein P47K [Eubacterium cellulosolvens 6]
          Length = 396

 Score = 37.2 bits (86), Expect = 0.78,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 57/156 (36%), Gaps = 41/156 (26%)

Query: 8   IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEE 67
           IGID      G G +  AG  +  ++SG I   +              L +V++ +RP+ 
Sbjct: 42  IGID------G-GFLKDAGIEITEMNSGCICCSLVGDFG-------TALKEVVEKYRPDR 87

Query: 68  AAVE--------QVF--VNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIG 117
             +E         V   V ++A + L+L  A  +  +                 K  +  
Sbjct: 88  IVIEPSGVGKLSDVIKAVQRNAESDLELNSATTVVDV--------------TKAKMYLKN 133

Query: 118 VGHGDKKQIHMMLKMLMPE-SFFKGKDA--ADALAI 150
            G   K Q+     +++      K  DA  A+A+A+
Sbjct: 134 FGEFFKNQVEAAGTIILSRMDTPKATDAKVAEAMAL 169


>gi|91224986|ref|ZP_01260245.1| hypothetical protein V12G01_11208 [Vibrio alginolyticus 12G01]
 gi|91190232|gb|EAS76502.1| hypothetical protein V12G01_11208 [Vibrio alginolyticus 12G01]
          Length = 773

 Score = 37.2 bits (86), Expect = 0.78,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 9/65 (13%)

Query: 8   IGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           +G+DPGLR TG    +VD  G     +++ TI     Q    +  Q+   +  +++ +  
Sbjct: 329 LGLDPGLR-TGSKIAVVDSTG---KVLATETIYPHPPQKQYDKSAQI---VEQLVRKYNV 381

Query: 66  EEAAV 70
           +  A+
Sbjct: 382 DLIAI 386


>gi|15602992|ref|NP_246064.1| hypothetical protein PM1127 [Pasteurella multocida subsp.
          multocida str. Pm70]
 gi|12721472|gb|AAK03211.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 1056

 Score = 37.2 bits (86), Expect = 0.78,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 10/53 (18%)

Query: 7  IIGIDPGLRRTGWGIVDVAGDN--LCFVSSGT-I-------VSCVRQSLAFRL 49
          I+G+D G+   GW +V++  +   +  +  G  I        +    +L+ RL
Sbjct: 9  ILGLDLGIASVGWAVVEINENEDPIGLIDVGVRIFERAEVPKTGESLALSRRL 61


>gi|91762272|ref|ZP_01264237.1| crossover junction endodeoxyribonuclease [Candidatus Pelagibacter
           ubique HTCC1002]
 gi|91718074|gb|EAS84724.1| crossover junction endodeoxyribonuclease [Candidatus Pelagibacter
           ubique HTCC1002]
          Length = 164

 Score = 37.2 bits (86), Expect = 0.79,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 50/122 (40%), Gaps = 24/122 (19%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQS-LAF------RL--CQLYEG 55
           + IIGIDPG   TG         ++CF   G I+  +    +        ++   Q+Y  
Sbjct: 1   MLIIGIDPG--ITG---------SICFFQDGKIIDVIEMPNMPEGKKNKKQVNGAQIYYE 49

Query: 56  LTDVIKNWRPEE--AAVEQV--FVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTI 111
           ++  IK+ + E+    +EQV     +   +    GQ+  I     +  ++P+    P   
Sbjct: 50  ISSKIKDIKKEDIKVIIEQVSAMPGQGVTSMFNFGQSFGILKGICSAMQLPMYFVRPTKW 109

Query: 112 KK 113
           KK
Sbjct: 110 KK 111


>gi|49475549|ref|YP_033590.1| hypothetical protein BH07790 [Bartonella henselae str. Houston-1]
 gi|49238355|emb|CAF27579.1| hypothetical protein BH07790 [Bartonella henselae str. Houston-1]
          Length = 95

 Score = 37.2 bits (86), Expect = 0.80,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 6/71 (8%)

Query: 83  LKLGQARAIAILSPAL----ARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESF 138
           +         + +        +IP       TIKK + G G+  K++I  ++      S 
Sbjct: 13  IDAAHVYGGLLATLTALYEYHQIPYEGIPVGTIKKKMTGKGNASKEEIIKVVCAKGHASC 72

Query: 139 FKGKDAADALA 149
               + ADALA
Sbjct: 73  D--DNEADALA 81


>gi|254409483|ref|ZP_05023264.1| S1 RNA binding domain protein [Microcoleus chthonoplastes PCC 7420]
 gi|196183480|gb|EDX78463.1| S1 RNA binding domain protein [Microcoleus chthonoplastes PCC 7420]
          Length = 718

 Score = 37.2 bits (86), Expect = 0.81,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 11/65 (16%)

Query: 8   IGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           + IDPGLR TG    +++  G    F+   TI     +            +  +I+ ++ 
Sbjct: 324 LAIDPGLR-TGCKVAVLNETG---KFMEYQTIFPHTGKPTQA-----ATTVKTLIEKYQI 374

Query: 66  EEAAV 70
           E  A+
Sbjct: 375 ELIAI 379


>gi|325270442|ref|ZP_08137046.1| YhgF like protein [Prevotella multiformis DSM 16608]
 gi|324987238|gb|EGC19217.1| YhgF like protein [Prevotella multiformis DSM 16608]
          Length = 728

 Score = 37.2 bits (86), Expect = 0.82,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 28/66 (42%), Gaps = 7/66 (10%)

Query: 6   RIIGIDPGLRR-TGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           R++ +DPG         +D  G+    +    I     ++   ++ Q  E L  +I+ ++
Sbjct: 328 RVLALDPGFANGCKIACLDGQGN---LLHHEVIYPHPPRN---QVRQAAEALQRIIRTYK 381

Query: 65  PEEAAV 70
            E  A+
Sbjct: 382 IEAIAI 387


>gi|296122660|ref|YP_003630438.1| RNA binding S1 domain protein [Planctomyces limnophilus DSM 3776]
 gi|296015000|gb|ADG68239.1| RNA binding S1 domain protein [Planctomyces limnophilus DSM 3776]
          Length = 736

 Score = 37.2 bits (86), Expect = 0.82,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 9/67 (13%)

Query: 6   RIIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           R++ IDPGLR TG    +++  GD L  +    I     + L  R       +  +++  
Sbjct: 322 RVLAIDPGLR-TGCKLAVLNETGDVL-ALDVVYITGNADRQLEAR-----NKIVQLVREH 374

Query: 64  RPEEAAV 70
             +  A+
Sbjct: 375 GIKTIAI 381


>gi|38679286|gb|AAR26460.1| m3 protein [Lactococcus phage bIL170]
          Length = 112

 Score = 37.2 bits (86), Expect = 0.82,   Method: Composition-based stats.
 Identities = 19/106 (17%), Positives = 42/106 (39%), Gaps = 13/106 (12%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLC--FVSSGTIVSCVRQSLAFRLCQLYEGLTD 58
           M K+   + ID     TG+       + L   +V  G+I     +    R   + +G+T+
Sbjct: 1   MSKA---LAIDFSTSNTGYAF----RNPLTNEYV-VGSIAGGKSKDPLERAKIIADGITE 52

Query: 59  VIKNWR-PEEAA-VEQVFVNKDAVATLKLGQARAIAI-LSPALARI 101
           VI+++   +    +E+  +   +   + L +A    + +      I
Sbjct: 53  VIEHYNLFDYFIYIEEPIITFKSKGNISLIRANGSFLGVMRNRHNI 98


>gi|115315626|ref|YP_764313.1| Holliday junction endonuclease [Lactococcus phage 712]
 gi|3695269|gb|AAC63027.1| M3 [Lactococcus phage 712]
 gi|82471176|gb|ABB77620.1| Holliday junction endonuclease [Lactococcus phage 712]
          Length = 161

 Score = 37.2 bits (86), Expect = 0.82,   Method: Composition-based stats.
 Identities = 19/106 (17%), Positives = 42/106 (39%), Gaps = 13/106 (12%)

Query: 1   MRKSIRIIGIDPGLRRTGWGIVDVAGDNLC--FVSSGTIVSCVRQSLAFRLCQLYEGLTD 58
           M K+   + ID     TG+       + L   +V  G+I     +    R   + +G+T+
Sbjct: 1   MSKA---LAIDFSTSNTGYAF----RNPLTSEYV-VGSIAGGKSKDPLERAKIIADGITE 52

Query: 59  VIKNWR-PEEAA-VEQVFVNKDAVATLKLGQARAIAI-LSPALARI 101
           VI+++   +    +E+  +   +   + L +A    + +      I
Sbjct: 53  VIEHYNLFDYFIYIEEPIITFKSKGNISLIRANGSFLGVMRNRHNI 98


>gi|116627549|ref|YP_820168.1| transcriptional regulator [Streptococcus thermophilus LMD-9]
 gi|116100826|gb|ABJ65972.1| Transcriptional accessory protein [Streptococcus thermophilus
           LMD-9]
          Length = 710

 Score = 37.2 bits (86), Expect = 0.82,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 7/67 (10%)

Query: 6   RIIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           R++G DP  R TG    +VD  G     +++  I      S A ++ Q  + L D+IK  
Sbjct: 310 RVLGFDPAFR-TGAKLAVVDQIG---KLITTQVIYPVAPASQA-KIAQAKKDLADLIKEH 364

Query: 64  RPEEAAV 70
             E  A+
Sbjct: 365 AIEIIAI 371


>gi|282859086|ref|ZP_06268217.1| CobW/P47K family protein [Prevotella bivia JCVIHMP010]
 gi|282588116|gb|EFB93290.1| CobW/P47K family protein [Prevotella bivia JCVIHMP010]
          Length = 412

 Score = 37.2 bits (86), Expect = 0.84,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 7/52 (13%)

Query: 20  GIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVE 71
           GIVD   D+L  + +G I   ++  L  +L        ++I   + +   +E
Sbjct: 56  GIVDEKDDSLVALQNGCICCTLKMDLVQQL-------NEIISQHKFDYIVIE 100


>gi|238924257|ref|YP_002937773.1| hypothetical protein EUBREC_1895 [Eubacterium rectale ATCC 33656]
 gi|259495705|sp|C4ZAY4|RUVX_EUBR3 RecName: Full=Putative Holliday junction resolvase
 gi|238875932|gb|ACR75639.1| hypothetical protein EUBREC_1895 [Eubacterium rectale ATCC 33656]
          Length = 143

 Score = 37.2 bits (86), Expect = 0.84,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 28/67 (41%), Gaps = 8/67 (11%)

Query: 5  IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGT-IVSCVRQSLAFRLCQLYEGLTDVIKNW 63
          +RI+G+D G +  G  +     D L   + G  IV         +L Q    + ++I  +
Sbjct: 1  MRILGLDFGSKTVGVAV----SDELLITAQGVEIVRRKS---PSKLRQTLARIEEIIAEY 53

Query: 64 RPEEAAV 70
          + +   +
Sbjct: 54 KVDRIVL 60


>gi|16331716|ref|NP_442444.1| hypothetical protein sll0832 [Synechocystis sp. PCC 6803]
 gi|1001270|dbj|BAA10514.1| sll0832 [Synechocystis sp. PCC 6803]
          Length = 151

 Score = 37.2 bits (86), Expect = 0.84,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 29/86 (33%), Gaps = 20/86 (23%)

Query: 2  RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
             +  +G DPG  + G  +  + GD           +   Q +  RL  L E       
Sbjct: 13 PSCMNYLGFDPGRDKCGVAV--MTGDRQILYH----ETIAAQEVPQRLPALCE------- 59

Query: 62 NWRPEEAAVEQVFVNKDAVATLKLGQ 87
           ++     VEQV +      T K  Q
Sbjct: 60 QYQ-----VEQVVMGN--QTTAKQWQ 78


>gi|319940744|ref|ZP_08015085.1| transcriptional accessory protein [Sutterella wadsworthensis
           3_1_45B]
 gi|319805804|gb|EFW02578.1| transcriptional accessory protein [Sutterella wadsworthensis
           3_1_45B]
          Length = 778

 Score = 37.2 bits (86), Expect = 0.84,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 29/66 (43%), Gaps = 9/66 (13%)

Query: 7   IIGIDPGLRRTGW--GIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++G+DPG R TG    ++D  G     ++   ++     +   R       L D+ + ++
Sbjct: 337 VLGLDPGFR-TGVKTAVIDSTG---RVLAHDVLMMHTSAAQKQRAEA---QLIDLCRKYK 389

Query: 65  PEEAAV 70
           P   A+
Sbjct: 390 PAFIAI 395


>gi|167747070|ref|ZP_02419197.1| hypothetical protein ANACAC_01782 [Anaerostipes caccae DSM 14662]
 gi|167654030|gb|EDR98159.1| hypothetical protein ANACAC_01782 [Anaerostipes caccae DSM 14662]
          Length = 138

 Score = 37.2 bits (86), Expect = 0.85,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 37/82 (45%), Gaps = 13/82 (15%)

Query: 5  IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
          +RI+G+D G +  G  + D  G     +++    +  R+    +L + Y  + ++   ++
Sbjct: 1  MRILGLDYGTKTVGVALSDELG-----ITAQPFETITRKD-ENKLRKTYARIEEIAAEYK 54

Query: 65 PEEAAVEQVFVN--KDAVATLK 84
               VE++ +   K+   T+ 
Sbjct: 55 -----VEKIVLGYPKNMNNTIG 71


>gi|119945506|ref|YP_943186.1| RNA-binding S1 domain-containing protein [Psychromonas ingrahamii
           37]
 gi|119864110|gb|ABM03587.1| RNA binding S1 domain protein [Psychromonas ingrahamii 37]
          Length = 728

 Score = 37.2 bits (86), Expect = 0.85,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 9/65 (13%)

Query: 8   IGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           +G+DPGLR TG    +VD  G     ++  TI     Q +  +  Q  + +  +IK ++ 
Sbjct: 332 LGLDPGLR-TGCKLAVVDSTG---KLLAYQTIY--PHQPV-NKTQQAAQEMLKLIKEFKV 384

Query: 66  EEAAV 70
           E  A+
Sbjct: 385 ELIAI 389


>gi|317029385|ref|XP_001391454.2| NAD-dependent 15-hydroxyprostaglandin dehydrogenase [Aspergillus
           niger CBS 513.88]
          Length = 319

 Score = 37.2 bits (86), Expect = 0.87,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 3/50 (6%)

Query: 20  GIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAA 69
           G+    G  +  V+ G I + +      +L  + EG    +    P+E A
Sbjct: 190 GLDQECGIRITAVAPGVIKTPLWTDHPEKLKVVNEGADAWVT---PDEVA 236


>gi|189026147|ref|YP_001933919.1| protein Tex [Treponema pallidum subsp. pallidum SS14]
 gi|189018722|gb|ACD71340.1| protein Tex [Treponema pallidum subsp. pallidum SS14]
          Length = 528

 Score = 37.2 bits (86), Expect = 0.87,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 13/70 (18%)

Query: 3   KSIRIIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
           K  R++GIDPG+R TG     +D  G    ++ S  I        A         LT  +
Sbjct: 330 KGTRVLGIDPGIR-TGTKCAALDETGQ---YLGSFVIY-PHNTDHAR------AALTQAL 378

Query: 61  KNWRPEEAAV 70
             +R +  AV
Sbjct: 379 DRYRIQLVAV 388


>gi|330718559|ref|ZP_08313159.1| transcriptional accessory protein [Leuconostoc fallax KCTC 3537]
          Length = 727

 Score = 36.9 bits (85), Expect = 0.89,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 14/77 (18%)

Query: 1   MRKSIR---IIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRL--CQLY 53
           M++ ++   ++G DPG R TG    I+D  G    F+ S  I      +   R     L+
Sbjct: 324 MQRPLKNKIVMGFDPGYR-TGSKLAIIDENG---KFLCSQVIYPHKPANKQQRQEAVTLF 379

Query: 54  EGLTDVIKNWRPEEAAV 70
           + L   I  +  +  A+
Sbjct: 380 QQL---ITQYGVQLVAI 393


>gi|325298000|ref|YP_004257917.1| Tex-like protein [Bacteroides salanitronis DSM 18170]
 gi|324317553|gb|ADY35444.1| Tex-like protein [Bacteroides salanitronis DSM 18170]
          Length = 710

 Score = 36.9 bits (85), Expect = 0.89,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 9/67 (13%)

Query: 6   RIIGIDPGLRRTGWGIV--DVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           R++GIDPG R TG  +V  D  G     + + T+     +S   R       LT +++ +
Sbjct: 317 RVMGIDPGYR-TGCKVVCLDAQG---ALLCNDTVYPHPPKS--ERQAA-ARKLTTLVEQY 369

Query: 64  RPEEAAV 70
           + E  A+
Sbjct: 370 KVEAIAI 376


>gi|119475503|ref|ZP_01615856.1| Transcriptional accessory protein [marine gamma proteobacterium
           HTCC2143]
 gi|119451706|gb|EAW32939.1| Transcriptional accessory protein [marine gamma proteobacterium
           HTCC2143]
          Length = 777

 Score = 36.9 bits (85), Expect = 0.89,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 9/65 (13%)

Query: 8   IGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           IG+DPGLR TG    +VD  G     +  G I          ++ +    +  + K ++ 
Sbjct: 331 IGLDPGLR-TGVKVAVVDGNG---KVLDHGAIYP---TPPQNKIAEASATIVAMAKKYQI 383

Query: 66  EEAAV 70
           E  A+
Sbjct: 384 ELIAI 388


>gi|262371107|ref|ZP_06064429.1| predicted protein [Acinetobacter johnsonii SH046]
 gi|262313993|gb|EEY95038.1| predicted protein [Acinetobacter johnsonii SH046]
          Length = 150

 Score = 36.9 bits (85), Expect = 0.92,   Method: Composition-based stats.
 Identities = 13/93 (13%), Positives = 27/93 (29%)

Query: 19  WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKD 78
           + +++  G+++ FV    I       +A     L   +  ++  + P     +     K 
Sbjct: 15  YCVLEKKGNSVTFVEKEKITYPKALDVASTAGWLETQICLLLDKYAPNAVGYKLPLTLKS 74

Query: 79  AVATLKLGQARAIAILSPALARIPVSEYAPNTI 111
                       I  L      I +  Y    I
Sbjct: 75  TKLIQNSIFPLGILNLCCNKKNIKIDHYTSQGI 107


>gi|167757700|ref|ZP_02429827.1| hypothetical protein CLOSCI_00030 [Clostridium scindens ATCC
          35704]
 gi|167664582|gb|EDS08712.1| hypothetical protein CLOSCI_00030 [Clostridium scindens ATCC
          35704]
          Length = 141

 Score = 36.9 bits (85), Expect = 0.93,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 33/69 (47%), Gaps = 11/69 (15%)

Query: 5  IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
          +RI+G+D G +  G  I D  G     +++  I +  R+    +L +    +  +I+ ++
Sbjct: 1  MRIMGLDYGSKTVGVAISDPLG-----ITAQAIETICRKD-ENKLRKTCARIETLIEEYK 54

Query: 65 PEEAAVEQV 73
               VE++
Sbjct: 55 -----VERI 58


>gi|19704499|ref|NP_604061.1| glucokinase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
 gi|296328377|ref|ZP_06870903.1| glucokinase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726]
 gi|19714775|gb|AAL95360.1| Glucokinase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
 gi|296154451|gb|EFG95243.1| glucokinase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726]
          Length = 315

 Score = 36.9 bits (85), Expect = 0.93,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 8  IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
          IGID G   T  G+VD  G+    ++S  I +   Q++   L +++E    +I  
Sbjct: 5  IGIDLGGTNTKIGVVDSEGN---LINSKIIKTHSHQNVDKTLERIWETAKKLILE 56


>gi|34762403|ref|ZP_00143404.1| Glucokinase; Xylose repressor [Fusobacterium nucleatum subsp.
          vincentii ATCC 49256]
 gi|27887928|gb|EAA24995.1| Glucokinase; Xylose repressor [Fusobacterium nucleatum subsp.
          vincentii ATCC 49256]
          Length = 315

 Score = 36.9 bits (85), Expect = 0.93,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 8  IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
          IGID G   T  G+VD  G+    ++S  I +   Q++   L +++E    +I  
Sbjct: 5  IGIDLGGTNTKIGVVDSEGN---LINSKIIKTHSHQNVDKTLERIWETAKKLILE 56


>gi|260771983|ref|ZP_05880900.1| transcription accessory protein [Vibrio metschnikovii CIP 69.14]
 gi|260612850|gb|EEX38052.1| transcription accessory protein [Vibrio metschnikovii CIP 69.14]
          Length = 773

 Score = 36.9 bits (85), Expect = 0.94,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 9/65 (13%)

Query: 8   IGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           +G+DPGLR TG    +VD  G     +++ TI   V Q+   R  Q    +  ++   + 
Sbjct: 329 LGLDPGLR-TGCKVAVVDATG---KVLATDTIYPHVPQNQYERAMQ---TVAALVNKHQV 381

Query: 66  EEAAV 70
           +  A+
Sbjct: 382 DLIAI 386


>gi|71083298|ref|YP_266017.1| crossover junction endodeoxyribonuclease [Candidatus Pelagibacter
           ubique HTCC1062]
 gi|71062411|gb|AAZ21414.1| crossover junction endodeoxyribonuclease [Candidatus Pelagibacter
           ubique HTCC1062]
          Length = 164

 Score = 36.9 bits (85), Expect = 0.94,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 49/122 (40%), Gaps = 24/122 (19%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQS-LAF------RL--CQLYEG 55
           + IIGIDPG   TG         ++CF   G I   +    +        ++   Q+Y  
Sbjct: 1   MLIIGIDPG--ITG---------SICFFQDGKITDVIEMPNMPEGKKNKKQVNGAQIYYE 49

Query: 56  LTDVIKNWRPEE--AAVEQV--FVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTI 111
           ++  IK+ + E+    +EQV     +   +    GQ+  I     +  ++P+    P   
Sbjct: 50  ISSRIKDIKKEDIKVIIEQVSAMPGQGVTSMFNFGQSFGILKGICSAMQLPMYFVRPTKW 109

Query: 112 KK 113
           KK
Sbjct: 110 KK 111


>gi|75907377|ref|YP_321673.1| hypothetical protein Ava_1154 [Anabaena variabilis ATCC 29413]
 gi|75701102|gb|ABA20778.1| hypothetical protein Ava_1154 [Anabaena variabilis ATCC 29413]
          Length = 156

 Score = 36.9 bits (85), Expect = 0.95,   Method: Composition-based stats.
 Identities = 11/88 (12%), Positives = 31/88 (35%), Gaps = 5/88 (5%)

Query: 19  WGIVDVAGDNLCFVSSGTIVSCVR-QSLAFRLCQLYEGLTDVIKNWRPEEAAVEQV---- 73
           + +V         + +  +      +  + +L    + L  +I+ ++P+  A+       
Sbjct: 16  YAVVKGTKKEPILIVNDKMTPPKSYEKESQQLVWYRDRLLTIIEQYQPQFGAIRLPEPSS 75

Query: 74  FVNKDAVATLKLGQARAIAILSPALARI 101
           F   +  + LK  +   + +      RI
Sbjct: 76  FPRANKDSLLKRARIEGVILEVLGEKRI 103


>gi|256845423|ref|ZP_05550881.1| glucokinase [Fusobacterium sp. 3_1_36A2]
 gi|294785281|ref|ZP_06750569.1| glucokinase [Fusobacterium sp. 3_1_27]
 gi|256718982|gb|EEU32537.1| glucokinase [Fusobacterium sp. 3_1_36A2]
 gi|294486995|gb|EFG34357.1| glucokinase [Fusobacterium sp. 3_1_27]
          Length = 315

 Score = 36.9 bits (85), Expect = 0.96,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 8  IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
          IGID G   T  G+VD  G+    ++S  I +   Q++   L +++E    +I  
Sbjct: 5  IGIDLGGTNTKIGVVDSEGN---LINSKIIKTHSHQNVDKTLERIWETAKKLILE 56


>gi|237742087|ref|ZP_04572568.1| glucokinase [Fusobacterium sp. 4_1_13]
 gi|229429735|gb|EEO39947.1| glucokinase [Fusobacterium sp. 4_1_13]
          Length = 315

 Score = 36.9 bits (85), Expect = 0.97,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 8  IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
          IGID G   T  G+VD  G+    ++S  I +   Q++   L +++E    +I  
Sbjct: 5  IGIDLGGTNTKIGVVDSEGN---LINSKIIKTHSHQNVDKTLERIWETAKKLILE 56


>gi|167763615|ref|ZP_02435742.1| hypothetical protein BACSTE_01990 [Bacteroides stercoris ATCC
           43183]
 gi|167698909|gb|EDS15488.1| hypothetical protein BACSTE_01990 [Bacteroides stercoris ATCC
           43183]
          Length = 710

 Score = 36.9 bits (85), Expect = 0.97,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 9/67 (13%)

Query: 6   RIIGIDPGLRRTGWGIV--DVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           R++GIDPG R TG  +V  D  G+    + +  I      + +    + +  L  +I+ +
Sbjct: 315 RVMGIDPGFR-TGCKVVCLDAQGN---LLHNENIYPHPPVNQS---KEAFAKLQKMIEAY 367

Query: 64  RPEEAAV 70
           + E  AV
Sbjct: 368 KVEAIAV 374


>gi|262392648|ref|YP_003284502.1| transcription accessory protein [Vibrio sp. Ex25]
 gi|262336242|gb|ACY50037.1| transcription accessory protein [Vibrio sp. Ex25]
          Length = 773

 Score = 36.9 bits (85), Expect = 0.98,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 9/65 (13%)

Query: 8   IGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           +G+DPGLR TG    +VD  G     +++ TI     Q    +  Q+   +  +++ +  
Sbjct: 329 LGLDPGLR-TGSKIAVVDSTG---KVLATETIYPHPPQKQYDKSAQI---VDQLVRKYNV 381

Query: 66  EEAAV 70
           +  A+
Sbjct: 382 DLIAI 386


>gi|325272814|ref|ZP_08139151.1| DNA maturase B [Pseudomonas sp. TJI-51]
 gi|324102019|gb|EGB99528.1| DNA maturase B [Pseudomonas sp. TJI-51]
          Length = 562

 Score = 36.9 bits (85), Expect = 1.00,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 10/71 (14%)

Query: 7   IIGIDPGLRR---TGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           ++ IDP  R    TG+ +V V   NL  V++G +           L ++        K  
Sbjct: 351 VMAIDPSGRGQDETGYAVVKVLMGNLFLVAAGGLRGGYSDETLETLAKIA-------KAH 403

Query: 64  RPEEAAVEQVF 74
           +     +E  F
Sbjct: 404 QANHIIIEANF 414


>gi|237744826|ref|ZP_04575307.1| glucokinase [Fusobacterium sp. 7_1]
 gi|260494624|ref|ZP_05814754.1| glucokinase [Fusobacterium sp. 3_1_33]
 gi|229432055|gb|EEO42267.1| glucokinase [Fusobacterium sp. 7_1]
 gi|260197786|gb|EEW95303.1| glucokinase [Fusobacterium sp. 3_1_33]
          Length = 315

 Score = 36.9 bits (85), Expect = 1.00,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 8  IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
          IGID G   T  G+VD  G+    ++S  I +   Q++   L +++E    +I  
Sbjct: 5  IGIDLGGTNTKIGVVDSEGN---LINSKIIKTHSHQNVDKTLERIWETAKKLILE 56


>gi|325968479|ref|YP_004244671.1| hypothetical protein VMUT_0959 [Vulcanisaeta moutnovskia 768-28]
 gi|323707682|gb|ADY01169.1| hypothetical protein VMUT_0959 [Vulcanisaeta moutnovskia 768-28]
          Length = 652

 Score = 36.9 bits (85), Expect = 1.0,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 51/147 (34%), Gaps = 38/147 (25%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR-P 65
           I+GIDPG+  TG  ++D+ G+         +     ++L+ R       +  ++  +  P
Sbjct: 257 IVGIDPGI-VTGVAVLDLNGN--------VLALHSGKNLSRR------HVLKIVYQYGIP 301

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
              AV+     K +    KL       + +P    + +                  +K +
Sbjct: 302 ILIAVDT---AKPSDYAKKLAAMVGAVLYNPDR-DLSI-----------------AEKSE 340

Query: 126 IHMMLKMLMPESFFKGKDAADALAIAV 152
           I + +      +        DALA A 
Sbjct: 341 IAIKISREQGVTVKDP-HMRDALAAAY 366


>gi|322514772|ref|ZP_08067796.1| hypothetical protein HMPREF0027_1548 [Actinobacillus ureae ATCC
          25976]
 gi|322119268|gb|EFX91396.1| hypothetical protein HMPREF0027_1548 [Actinobacillus ureae ATCC
          25976]
          Length = 400

 Score = 36.9 bits (85), Expect = 1.0,   Method: Composition-based stats.
 Identities = 9/32 (28%), Positives = 17/32 (53%), Gaps = 2/32 (6%)

Query: 7  IIGIDPGLRRTGWGIVDVA--GDNLCFVSSGT 36
          I+G+D G+   GW +V++    + L  +  G 
Sbjct: 9  ILGLDLGIASVGWAVVEIDEQENPLGLIDVGV 40


>gi|307256472|ref|ZP_07538254.1| CRISPR-associated protein, Csn1 family [Actinobacillus
          pleuropneumoniae serovar 10 str. D13039]
 gi|306865102|gb|EFM97003.1| CRISPR-associated protein, Csn1 family [Actinobacillus
          pleuropneumoniae serovar 10 str. D13039]
          Length = 1054

 Score = 36.9 bits (85), Expect = 1.0,   Method: Composition-based stats.
 Identities = 9/32 (28%), Positives = 17/32 (53%), Gaps = 2/32 (6%)

Query: 7  IIGIDPGLRRTGWGIVDVA--GDNLCFVSSGT 36
          I+G+D G+   GW +V++    + L  +  G 
Sbjct: 9  ILGLDLGIASVGWAVVEIDEQENPLGLIDVGV 40


>gi|295115537|emb|CBL36384.1| conserved hypothetical protein TIGR00250 [butyrate-producing
          bacterium SM4/1]
          Length = 140

 Score = 36.9 bits (85), Expect = 1.0,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 33/66 (50%), Gaps = 6/66 (9%)

Query: 5  IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
          +RI+G D G + TG  + D  G     +++  + + VR+    +L Q    + ++I+ ++
Sbjct: 1  MRIMGQDFGSKTTGVAVSDPLG-----LTAQGLETIVRKD-ENKLRQTCARIEELIEEYQ 54

Query: 65 PEEAAV 70
           E   +
Sbjct: 55 IEAIVL 60


>gi|313894648|ref|ZP_07828211.1| conserved hypothetical protein [Veillonella sp. oral taxon 158
          str. F0412]
 gi|313440838|gb|EFR59267.1| conserved hypothetical protein [Veillonella sp. oral taxon 158
          str. F0412]
          Length = 175

 Score = 36.9 bits (85), Expect = 1.0,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 3/60 (5%)

Query: 1  MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
          M ++  I+ +DPG  +TG  IV   G     V    I +        RL   Y G+  ++
Sbjct: 1  MTENTYILAVDPGNEKTGVAIVTPDG---SMVCRNIISTKTFNDDIERLLTEYYGIVHIV 57


>gi|329735684|gb|EGG71967.1| Tex-like protein N-terminal domain protein [Staphylococcus
           epidermidis VCU028]
          Length = 716

 Score = 36.9 bits (85), Expect = 1.0,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 52/123 (42%), Gaps = 27/123 (21%)

Query: 2   RKSIR---IIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGL 56
           +  ++   I+G+DP  R TG    +V+  G    F++ G I      S   ++ +  + L
Sbjct: 309 QPPMKGKQILGVDPAFR-TGCKLAVVNPFG---TFIAKGVIYPHPPIS---KVEEAEKEL 361

Query: 57  TDVIKNWRPEEAAV-------E-QVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAP 108
             VI ++  E  A+       E + FV K     +K  Q +A  I+    A   V  Y+ 
Sbjct: 362 VKVISDYNIELLAIGNGTASRETEQFVAK----VIKKYQLQAQFIIV-NEAGASV--YSA 414

Query: 109 NTI 111
           + I
Sbjct: 415 SEI 417


>gi|322411371|gb|EFY02279.1| transcription accessory protein [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 710

 Score = 36.9 bits (85), Expect = 1.0,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 7/66 (10%)

Query: 7   IIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++G DP  R TG    IVD  G     +++  I      S   ++    E L  +I+ ++
Sbjct: 311 VLGFDPAFR-TGAKLAIVDQTG---KLLATQVIYPVAPAS-QTKIQAAKETLAQLIETYQ 365

Query: 65  PEEAAV 70
            +  A+
Sbjct: 366 IDIIAI 371


>gi|260172111|ref|ZP_05758523.1| hypothetical protein BacD2_09633 [Bacteroides sp. D2]
 gi|315920422|ref|ZP_07916662.1| crispr-associated protein [Bacteroides sp. D2]
 gi|313694297|gb|EFS31132.1| crispr-associated protein [Bacteroides sp. D2]
          Length = 1436

 Score = 36.9 bits (85), Expect = 1.0,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 46/131 (35%), Gaps = 36/131 (27%)

Query: 6   RIIGIDPGLRRTGWGIVDVAGD---NLCFVSSGT------------------IVSCVRQS 44
           RI+G+D G    GW +VD A +       V  G                   I +   ++
Sbjct: 3   RILGLDLGTNSIGWALVDEAENKDERSSIVKLGVRVNPLTVDELTNFEKGKSITTNADRT 62

Query: 45  LA-------FRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDA-VATLKLGQARAIAILSP 96
           L         R     E L +V+K  +      E   ++++    T +  + RA      
Sbjct: 63  LKRGMRRNLQRYKLRRETLMEVLKEHK---LITEDTILSENGNRTTFETYRLRA----KA 115

Query: 97  ALARIPVSEYA 107
           A  +I + E+A
Sbjct: 116 ATEKISLEEFA 126


>gi|225574862|ref|ZP_03783472.1| hypothetical protein RUMHYD_02940 [Blautia hydrogenotrophica DSM
          10507]
 gi|225037936|gb|EEG48182.1| hypothetical protein RUMHYD_02940 [Blautia hydrogenotrophica DSM
          10507]
          Length = 152

 Score = 36.9 bits (85), Expect = 1.0,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 31/82 (37%), Gaps = 13/82 (15%)

Query: 5  IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
          +RI+G+D G +  G  + D  G  L       I       L   L ++      +I+ + 
Sbjct: 1  MRILGLDFGSKTVGVAVSDPLG--LTAQGVEIIRRKSENKLRQTLARI----EALIQEYE 54

Query: 65 PEEAAVEQVFVN--KDAVATLK 84
               VE + +   K+   T+ 
Sbjct: 55 -----VETLVLGLPKNMNNTMG 71


>gi|323126833|gb|ADX24130.1| putative transcription accessory protein [Streptococcus
           dysgalactiae subsp. equisimilis ATCC 12394]
          Length = 710

 Score = 36.9 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 7/66 (10%)

Query: 7   IIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++G DP  R TG    IVD  G     +++  I      S   ++    E L  +I+ ++
Sbjct: 311 VLGFDPAFR-TGAKLAIVDQTG---KLLATQVIYPVAPAS-QTKIQAAKETLAQLIETYQ 365

Query: 65  PEEAAV 70
            +  A+
Sbjct: 366 IDIIAI 371


>gi|256026560|ref|ZP_05440394.1| glucokinase [Fusobacterium sp. D11]
 gi|289764567|ref|ZP_06523945.1| glucokinase [Fusobacterium sp. D11]
 gi|289716122|gb|EFD80134.1| glucokinase [Fusobacterium sp. D11]
          Length = 315

 Score = 36.9 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 8  IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
          IGID G   T  G+VD  G+    ++S  I +   Q++   L +++E    +I  
Sbjct: 5  IGIDLGGTNTKIGVVDSEGN---LINSKIIKTHSHQNVDRTLERIWETAKKLILE 56


>gi|251782010|ref|YP_002996312.1| hypothetical protein SDEG_0596 [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242390639|dbj|BAH81098.1| hypothetical protein SDEG_0596 [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
          Length = 710

 Score = 36.9 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 7/66 (10%)

Query: 7   IIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++G DP  R TG    IVD  G     +++  I      S   ++    E L  +I+ ++
Sbjct: 311 VLGFDPAFR-TGAKLAIVDQTG---KLLATQVIYPVAPAS-QTKIQAAKETLAQLIETYQ 365

Query: 65  PEEAAV 70
            +  A+
Sbjct: 366 IDIIAI 371


>gi|298490918|ref|YP_003721095.1| Tex-like protein protein-like protein ['Nostoc azollae' 0708]
 gi|298232836|gb|ADI63972.1| Tex-like protein protein-like protein ['Nostoc azollae' 0708]
          Length = 719

 Score = 36.9 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 21/113 (18%), Positives = 46/113 (40%), Gaps = 22/113 (19%)

Query: 8   IGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           + IDPG R TG    +++  G    F+    +     Q+   R  +    +  +I+ ++ 
Sbjct: 324 LAIDPGFR-TGCKVAVLEQTG---KFLEYQAVF--PHQAAEQR-KKAARTIKKLIEKYQI 376

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALA--RIPVSE-----YAPNTI 111
           E  A+       +  A+ + G+  A  + +      ++ VSE     Y+ + +
Sbjct: 377 ELIAI------GNGTASRETGEFVAEVLATCERKPIQVMVSESGASIYSASKV 423


>gi|254228562|ref|ZP_04921987.1| S1 RNA binding domain protein [Vibrio sp. Ex25]
 gi|151938944|gb|EDN57777.1| S1 RNA binding domain protein [Vibrio sp. Ex25]
          Length = 608

 Score = 36.9 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 9/65 (13%)

Query: 8   IGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           +G+DPGLR TG    +VD  G     +++ TI     Q    +  Q+   +  +++ +  
Sbjct: 164 LGLDPGLR-TGSKIAVVDSTG---KVLATETIYPHPPQKQYDKSAQI---VDQLVRKYNV 216

Query: 66  EEAAV 70
           +  A+
Sbjct: 217 DLIAI 221


>gi|18466788|ref|NP_569595.1| hypothetical protein HCM2.0123c [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|16506104|emb|CAD09990.1| hypothetical protein [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
          Length = 189

 Score = 36.9 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 58/175 (33%), Gaps = 34/175 (19%)

Query: 1   MRKSIRIIGIDPGLRRTGWGI--VDVAGDNLCFVSSGTIVSCVR----------QSLAFR 48
           M K+IR++G+DP +   G  I  +D+  D L       + +               L  R
Sbjct: 1   MSKTIRVVGVDPSMSNFGLAIGTLDLETDKLDIHGLTLVETKAGGNKKTVRVNSDDL-RR 59

Query: 49  LCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQ-ARAIAILSPALARIPVSEYA 107
             +++     +I+           VF      +     Q +  I I   A    P+ +  
Sbjct: 60  ANEIWRTAKPIIEQTH-------MVFCELPVGSQSSRAQTSYGICIGVLACVDKPLIQVT 112

Query: 108 PNTIKKAVIGVGHGDKKQIHMMLKMLMPESF-------------FKGKDAADALA 149
           PN IK  V       K++I        P +               K +  ADA+A
Sbjct: 113 PNEIKHYVGNKLTTSKEEIIQWATQKQPNAPWLRRKQSGKEVLVNKNEHLADAVA 167


>gi|270491024|ref|ZP_06208097.1| conserved hypothetical protein [Yersinia pestis KIM D27]
 gi|270335005|gb|EFA45783.1| conserved hypothetical protein [Yersinia pestis KIM D27]
          Length = 191

 Score = 36.9 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 36/172 (20%), Positives = 64/172 (37%), Gaps = 26/172 (15%)

Query: 1   MRKSIRIIGIDPGLRRTGWGI--VDVAGDNLCFVSSGTIVSCVRQSLAFRLCQL-YEGLT 57
           M K+IR++G+DP +   G  I  +D+  D L       + +  +     +  ++  + L 
Sbjct: 1   MSKTIRVVGVDPSMSNFGLAIGTLDLETDKLDIHGLTLVETETKAGGNKKTVRVNSDDLR 60

Query: 58  ---DVIKNWRPEEAAVEQ---VFVNKDAVATLKLGQ-ARAIAILSPALARIPVSEYAPNT 110
              ++ +  +P    +EQ   VF      +     Q +  I I   A    P+ +  PN 
Sbjct: 61  RANEIWRTAKP---IIEQAHMVFCELPVGSQSSRAQTSYGICIGVLACVDKPLIQVTPNE 117

Query: 111 IKKAVIGVGHGDKKQIHMMLKMLMPESF-------------FKGKDAADALA 149
           IK  V       K++I        P +               K +  ADA+A
Sbjct: 118 IKHYVGNKLTTSKEEIIQWATQKQPNAPWLRRKQSGKEVLVNKNEHLADAVA 169


>gi|26989017|ref|NP_744442.1| DNA maturase B [Pseudomonas putida KT2440]
 gi|24983840|gb|AAN67906.1|AE016423_1 DNA maturase B [Pseudomonas putida KT2440]
          Length = 562

 Score = 36.9 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 10/71 (14%)

Query: 7   IIGIDPGLRR---TGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           ++ IDP  R    TG+ +V V   NL  V++G +           L ++        K  
Sbjct: 351 VMAIDPSGRGQDETGYAVVKVLMGNLFLVAAGGLRGGYSDETLETLAKIA-------KAH 403

Query: 64  RPEEAAVEQVF 74
           +     +E  F
Sbjct: 404 QANHIIIEANF 414


>gi|323698536|ref|ZP_08110448.1| Holliday junction resolvase YqgF [Desulfovibrio sp. ND132]
 gi|323458468|gb|EGB14333.1| Holliday junction resolvase YqgF [Desulfovibrio desulfuricans
          ND132]
          Length = 138

 Score = 36.9 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 9/66 (13%)

Query: 5  IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
          +R +GID GL+R G  + D  G  +  +               R   L++ LT++I +  
Sbjct: 1  MRALGIDFGLKRVGLAVSDRTGTLVSPL--------KTLERTTR-QALFDELTEIIHDEA 51

Query: 65 PEEAAV 70
           E   V
Sbjct: 52 IEAVVV 57


>gi|52788094|ref|YP_093922.1| hypothetical protein pG8786_042 [Yersinia pestis]
 gi|145597236|ref|YP_001154700.1| hypothetical protein YPDSF_4072 [Yersinia pestis Pestoides F]
 gi|52538023|emb|CAG27448.1| hypothetical protein [Yersinia pestis]
 gi|145213004|gb|ABP42409.1| hypothetical protein YPDSF_4072 [Yersinia pestis Pestoides F]
          Length = 189

 Score = 36.9 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 58/175 (33%), Gaps = 34/175 (19%)

Query: 1   MRKSIRIIGIDPGLRRTGWGI--VDVAGDNLCFVSSGTIVSCVR----------QSLAFR 48
           M K+IR++G+DP +   G  I  +D+  D L       + +               L  R
Sbjct: 1   MSKTIRVVGVDPSMSNFGLAIGTLDLETDKLDIHGLTLVETKAGGNKKTVRVNSDDL-RR 59

Query: 49  LCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQ-ARAIAILSPALARIPVSEYA 107
             +++     +I+           VF      +     Q +  I I   A    P+ +  
Sbjct: 60  ANEIWRTAKPIIEQAH-------MVFCELPVGSQSSRAQTSYGICIGVLACVDKPLIQVT 112

Query: 108 PNTIKKAVIGVGHGDKKQIHMMLKMLMPESF-------------FKGKDAADALA 149
           PN IK  V       K++I        P +               K +  ADA+A
Sbjct: 113 PNEIKNYVGNKLTTSKEEIIQWATQKQPNAPWLRRKQSGKEVLVNKNEHLADAVA 167


>gi|332970519|gb|EGK09508.1| YhgF like protein [Desmospora sp. 8437]
          Length = 749

 Score = 36.9 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 9/67 (13%)

Query: 6   RIIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           +++G+DP  R TG    +VD  G        G I   + QS A    +  E ++ +++ +
Sbjct: 350 KVLGVDPAYR-TGCKLAVVDETG---KMHHVGVIFPTLSQSKA---REAGETVSRLVEQY 402

Query: 64  RPEEAAV 70
             +  A+
Sbjct: 403 DIDIIAI 409


>gi|323490580|ref|ZP_08095786.1| hypothetical protein GPDM_14501 [Planococcus donghaensis MPA1U2]
 gi|323395846|gb|EGA88686.1| hypothetical protein GPDM_14501 [Planococcus donghaensis MPA1U2]
          Length = 721

 Score = 36.5 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 29/72 (40%), Gaps = 10/72 (13%)

Query: 1   MRKSIRIIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTD 58
           M+  + ++G+DP  R TG    ++D  G     +    I     +S      ++ E LT 
Sbjct: 314 MKNKM-VLGVDPAYR-TGCKLAVIDETG---KLLEVAVIYPHPPKSDQAGSKKIMERLT- 367

Query: 59  VIKNWRPEEAAV 70
               +  E  A+
Sbjct: 368 --AKYPIEIMAI 377


>gi|296110337|ref|YP_003620718.1| transcription accessory protein [Leuconostoc kimchii IMSNU 11154]
 gi|295831868|gb|ADG39749.1| transcription accessory protein [Leuconostoc kimchii IMSNU 11154]
          Length = 731

 Score = 36.5 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 10/75 (13%)

Query: 1   MRKSIR---IIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEG 55
           M+  ++   ++G DPG R TG    I+D  G    F+    I      +L  R     E 
Sbjct: 321 MQAPLKGQIVMGFDPGFR-TGSKLAIIDENG---KFLKKQVIYPHKPANLQQR-EAAAET 375

Query: 56  LTDVIKNWRPEEAAV 70
              +++++  +  A+
Sbjct: 376 FKTLVQDYHVQLVAI 390


>gi|323494582|ref|ZP_08099686.1| transcription accessory protein [Vibrio brasiliensis LMG 20546]
 gi|323311185|gb|EGA64345.1| transcription accessory protein [Vibrio brasiliensis LMG 20546]
          Length = 772

 Score = 36.5 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 9/65 (13%)

Query: 8   IGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           +G+DPGLR TG    +VD  G     +++ TI     Q    +  Q+   +  +++ +  
Sbjct: 329 LGLDPGLR-TGSKIAVVDSTG---KVLATETIYPHPPQKQYDKSAQI---VDALVRKYNV 381

Query: 66  EEAAV 70
           +  A+
Sbjct: 382 DLIAI 386


>gi|307594227|ref|YP_003900544.1| hypothetical protein Vdis_0078 [Vulcanisaeta distributa DSM 14429]
 gi|307549428|gb|ADN49493.1| Protein of unknown function DUF460 [Vulcanisaeta distributa DSM
           14429]
          Length = 652

 Score = 36.5 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 50/147 (34%), Gaps = 38/147 (25%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR-P 65
           I+GIDPG+  TG  ++D+ G+         +     ++L+ R       +  ++  +  P
Sbjct: 257 IVGIDPGI-VTGVAVLDLNGN--------VLTLQSGKNLSRR------HVLRIVYQYGTP 301

Query: 66  EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
              AV+     K +    KL       I  P    + +                  +K +
Sbjct: 302 VLIAVDT---AKPSDYAKKLAAMVGAVIYYPDR-DLSI-----------------AEKSE 340

Query: 126 IHMMLKMLMPESFFKGKDAADALAIAV 152
           I + +      +        DALA A 
Sbjct: 341 IAIKISREQGIAVKDP-HMRDALAAAY 366


>gi|31795214|ref|NP_857674.1| hypothetical protein YPKMT037 [Yersinia pestis KIM]
 gi|2996318|gb|AAC13198.1| unknown [Yersinia pestis KIM 10]
          Length = 195

 Score = 36.5 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 58/175 (33%), Gaps = 34/175 (19%)

Query: 1   MRKSIRIIGIDPGLRRTGWGI--VDVAGDNLCFVSSGTIVSCVR----------QSLAFR 48
           M K+IR++G+DP +   G  I  +D+  D L       + +               L  R
Sbjct: 1   MSKTIRVVGVDPSMSNFGLAIGTLDLETDKLDIHGLTLVETKAGGNKKTVRVNSDDL-RR 59

Query: 49  LCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQ-ARAIAILSPALARIPVSEYA 107
             +++     +I+           VF      +     Q +  I I   A    P+ +  
Sbjct: 60  ANEIWRTAKPIIEQAH-------MVFCELPVGSQSSRAQTSYGICIGVLACVDKPLIQVT 112

Query: 108 PNTIKKAVIGVGHGDKKQIHMMLKMLMPESF-------------FKGKDAADALA 149
           PN IK  V       K++I        P +               K +  ADA+A
Sbjct: 113 PNEIKHYVGNKLTTSKEEIIQWATQKQPNAPWLRRKQSGKEVLVNKNEHLADAVA 167


>gi|56807868|ref|ZP_00365703.1| COG2183: Transcriptional accessory protein [Streptococcus pyogenes
           M49 591]
          Length = 580

 Score = 36.5 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 7/66 (10%)

Query: 7   IIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++G DP  R TG    IVD  G     +++  I      S   ++    E LT +I+ ++
Sbjct: 311 VLGFDPAFR-TGAKLAIVDQTG---KLLTTQVIYPVAPAS-QTKIQAAKETLTQLIETYQ 365

Query: 65  PEEAAV 70
            +  A+
Sbjct: 366 IDIIAI 371


>gi|254302990|ref|ZP_04970348.1| glucokinase [Fusobacterium nucleatum subsp. polymorphum ATCC
          10953]
 gi|148323182|gb|EDK88432.1| glucokinase [Fusobacterium nucleatum subsp. polymorphum ATCC
          10953]
          Length = 315

 Score = 36.5 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 8  IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
          IGID G   T  GIVD  G+    ++S  I +   Q++   L +++E    +I  
Sbjct: 5  IGIDLGGTNTKIGIVDSEGN---LINSKIIKTHSHQNVDKTLERIWETAKKLILE 56


>gi|331005891|ref|ZP_08329243.1| Transcription accessory protein (S1 RNA-binding domain) [gamma
           proteobacterium IMCC1989]
 gi|330420335|gb|EGG94649.1| Transcription accessory protein (S1 RNA-binding domain) [gamma
           proteobacterium IMCC1989]
          Length = 780

 Score = 36.5 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 9/65 (13%)

Query: 8   IGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           IG+DPGLR TG    ++D  G     +  G I     Q    RL +    L +  + +  
Sbjct: 326 IGLDPGLR-TGVKVAVIDETG---KVLDHGAIFPNQPQ---KRLQEAEAVLVNFCQKYNV 378

Query: 66  EEAAV 70
           E  A+
Sbjct: 379 ELIAI 383


>gi|285019384|ref|YP_003377095.1| resolvase (endonuclease) protein [Xanthomonas albilineans GPE PC73]
 gi|283474602|emb|CBA17102.1| putative resolvase (endonuclease) protein [Xanthomonas albilineans]
          Length = 118

 Score = 36.5 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 31/97 (31%), Gaps = 5/97 (5%)

Query: 56  LTDVIKNWRP-EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKA 114
           L +V+    P      E+V  +    A    G             +IP       TIKK 
Sbjct: 15  LNEVLSTANPIHTVYFEEVRRHAGVDAAHAYGGFMGHLTAWCEHHQIPYQGVPVGTIKKH 74

Query: 115 VIGVGHGDKKQIHMMLKMLMPESFFKGKD-AADALAI 150
             G G+  K     M+            D  ADALA+
Sbjct: 75  ATGKGNAGKD---DMIASARRRGHTPIDDNQADALAL 108


>gi|218778660|ref|YP_002429978.1| RNA binding S1 domain protein [Desulfatibacillum alkenivorans
           AK-01]
 gi|218760044|gb|ACL02510.1| RNA binding S1 domain protein [Desulfatibacillum alkenivorans
           AK-01]
          Length = 752

 Score = 36.5 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 28/65 (43%), Gaps = 5/65 (7%)

Query: 6   RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           R++ IDPG R TG  +V V       +    +          ++ +  E + ++++  + 
Sbjct: 318 RVLAIDPGYR-TGCKVV-VLDRQGTLLHYTAVFPHSSD---RQVLEAEETVKNLVRQHQI 372

Query: 66  EEAAV 70
           E  A+
Sbjct: 373 EAVAI 377


>gi|301164874|emb|CBW24435.1| conserved hypothetical protein [Bacteroides fragilis 638R]
          Length = 1436

 Score = 36.5 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 41/117 (35%), Gaps = 32/117 (27%)

Query: 6   RIIGIDPGLRRTGWGIV---DVAGDNLCFVSSGT------------------IVSCVRQS 44
           RI+G+D G    GW +V   +   +    V  G                   I +   ++
Sbjct: 3   RILGLDLGTNSIGWALVNEAENKDERSSIVKLGVRVNPLTVDELTNFEKGKSITTNADRT 62

Query: 45  LA-------FRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDA-VATLKLGQARAIAI 93
           L         R     E LT+V+K  +      E   ++++    T +  + RA A+
Sbjct: 63  LKRGMRRNLQRYKLRRETLTEVLKEHK---LITEDTILSENGNRTTFETYRLRAKAV 116


>gi|265767599|ref|ZP_06095265.1| CRISPR-associated protein [Bacteroides sp. 2_1_16]
 gi|263252904|gb|EEZ24416.1| CRISPR-associated protein [Bacteroides sp. 2_1_16]
          Length = 1436

 Score = 36.5 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 41/117 (35%), Gaps = 32/117 (27%)

Query: 6   RIIGIDPGLRRTGWGIV---DVAGDNLCFVSSGT------------------IVSCVRQS 44
           RI+G+D G    GW +V   +   +    V  G                   I +   ++
Sbjct: 3   RILGLDLGTNSIGWALVNEAENKDERSSIVKLGVRVNPLTVDELTNFEKGKSITTNADRT 62

Query: 45  LA-------FRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDA-VATLKLGQARAIAI 93
           L         R     E LT+V+K  +      E   ++++    T +  + RA A+
Sbjct: 63  LKRGMRRNLQRYKLRRETLTEVLKEHK---LITEDTILSENGNRTTFETYRLRAKAV 116


>gi|134075928|emb|CAK48122.1| unnamed protein product [Aspergillus niger]
          Length = 284

 Score = 36.5 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 3/50 (6%)

Query: 20  GIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAA 69
           G+    G  +  V+ G I + +      +L  + EG    +    P+E A
Sbjct: 190 GLDQECGIRITAVAPGVIKTPLWTDHPEKLKVVNEGADAWVT---PDEVA 236


>gi|60683389|ref|YP_213533.1| hypothetical protein BF3954 [Bacteroides fragilis NCTC 9343]
 gi|60494823|emb|CAH09630.1| conserved hypothetical protein [Bacteroides fragilis NCTC 9343]
          Length = 1436

 Score = 36.5 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 41/117 (35%), Gaps = 32/117 (27%)

Query: 6   RIIGIDPGLRRTGWGIV---DVAGDNLCFVSSGT------------------IVSCVRQS 44
           RI+G+D G    GW +V   +   +    V  G                   I +   ++
Sbjct: 3   RILGLDLGTNSIGWALVNEAENKDERSSIVKLGVRVNPLTVDELTNFEKGKSITTNADRT 62

Query: 45  LA-------FRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDA-VATLKLGQARAIAI 93
           L         R     E LT+V+K  +      E   ++++    T +  + RA A+
Sbjct: 63  LKRGMRRNLQRYKLRRETLTEVLKEHK---LITEDTILSENGNRTTFETYRLRAKAV 116


>gi|313203212|ref|YP_004041869.1| tex-like protein [Paludibacter propionicigenes WB4]
 gi|312442528|gb|ADQ78884.1| Tex-like protein [Paludibacter propionicigenes WB4]
          Length = 713

 Score = 36.5 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 15/70 (21%)

Query: 6   RIIGIDPGLRRTGWGIV--DVAGDNLCFVSSGTIVSCV---RQSLAFRLCQLYEGLTDVI 60
           R++GIDPG R TG  +V  D  G+    + + TI         S A R       +  ++
Sbjct: 322 RVLGIDPGFR-TGCKVVCLDAQGN---LLHNETIYPHPPVNETSQAMR------KVQKMV 371

Query: 61  KNWRPEEAAV 70
           + +  +  A+
Sbjct: 372 EAYNIQAIAI 381


>gi|332828138|gb|EGK00854.1| hypothetical protein HMPREF9455_02819 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 707

 Score = 36.5 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 9/67 (13%)

Query: 6   RIIGIDPGLRRTGWGIV--DVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           R++GIDPG R TG  +V  D  G+    + + TI     Q+   +       +  ++  +
Sbjct: 315 RVLGIDPGYR-TGCKLVCLDAEGN---LLHNETIYPHPPQNETSKAG---NKVVKLVSTY 367

Query: 64  RPEEAAV 70
             +  A+
Sbjct: 368 NIDAIAI 374


>gi|1353077|sp|P13004|YLYS_BPPHV RecName: Full=Uncharacterized protein near lysin gene
 gi|312420|emb|CAA34299.1| unnamed protein product [Lactococcus phage phi-vML3]
          Length = 152

 Score = 36.5 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 12/82 (14%), Positives = 31/82 (37%), Gaps = 8/82 (9%)

Query: 17 TGWGIVDVAGDNLCFVSSGTIVS-CVRQSLAFRLCQLYEGLTDVIKNW--RPEEAAVEQV 73
          TG+      G     +  G+I +   +++   R   +   + D+I  +  +    A+E  
Sbjct: 10 TGYAF-RKDGQ----LYVGSIKAYNAKKNAWERTFDIVNAIKDIIDEFDLKDYHMAIETP 64

Query: 74 FVNKDAVATLKLGQARAIAILS 95
           + ++   ++ L       I +
Sbjct: 65 IMGRNRKHSITLANCNGYFIGA 86


>gi|296242340|ref|YP_003649827.1| butyrate kinase [Thermosphaera aggregans DSM 11486]
 gi|296094924|gb|ADG90875.1| butyrate kinase [Thermosphaera aggregans DSM 11486]
          Length = 396

 Score = 36.5 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 28/72 (38%), Gaps = 23/72 (31%)

Query: 5  IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSG------TIVSCVRQSLAFRLCQLYEGLTD 58
          +R++GIDPG +            +LC + +G      +I +    S         E + +
Sbjct: 1  MRVLGIDPGTKTM----------DLCLLDNGEVVGEASIETSKVASNP-------ETVLE 43

Query: 59 VIKNWRPEEAAV 70
           I   +P +  V
Sbjct: 44 EISELKPFDVVV 55


>gi|198450311|ref|XP_001357928.2| GA16052 [Drosophila pseudoobscura pseudoobscura]
 gi|198130981|gb|EAL27064.2| GA16052 [Drosophila pseudoobscura pseudoobscura]
          Length = 894

 Score = 36.5 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 24/68 (35%), Gaps = 11/68 (16%)

Query: 6   RIIGIDPGLRR-TGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEG--LTDVIKN 62
           RI+GIDPG        I+    D    + +G I          R  +      L +++  
Sbjct: 474 RILGIDPGFTNGCKLAIISETAD---VLDTGVIY-----PHGARANKRAAEQKLVELLSK 525

Query: 63  WRPEEAAV 70
              +  A+
Sbjct: 526 HTCQVIAL 533


>gi|195158238|ref|XP_002019999.1| GL13731 [Drosophila persimilis]
 gi|194116768|gb|EDW38811.1| GL13731 [Drosophila persimilis]
          Length = 894

 Score = 36.5 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 24/68 (35%), Gaps = 11/68 (16%)

Query: 6   RIIGIDPGLRR-TGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEG--LTDVIKN 62
           RI+GIDPG        I+    D    + +G I          R  +      L +++  
Sbjct: 474 RILGIDPGFTNGCKLAIISETAD---VLDTGVIY-----PHGARANKRAAEQKLVELLSK 525

Query: 63  WRPEEAAV 70
              +  A+
Sbjct: 526 HTCQVIAL 533


>gi|222056100|ref|YP_002538462.1| RNA binding S1 domain protein [Geobacter sp. FRC-32]
 gi|221565389|gb|ACM21361.1| RNA binding S1 domain protein [Geobacter sp. FRC-32]
          Length = 756

 Score = 36.5 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 15/70 (21%)

Query: 6   RIIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQ---SLAFRLCQLYEGLTDVI 60
           R++G+DPGLR TG     VD  G    F+   TI           A R       L  +I
Sbjct: 325 RVLGVDPGLR-TGSKLAAVDETG---RFLGHCTIYPHTGSGNIEPAKR------ELLRMI 374

Query: 61  KNWRPEEAAV 70
            + + E  A+
Sbjct: 375 HSHQSELVAI 384


>gi|253566765|ref|ZP_04844217.1| RNA-binding protein [Bacteroides sp. 3_2_5]
 gi|265763188|ref|ZP_06091756.1| RNA-binding protein [Bacteroides sp. 2_1_16]
 gi|251944328|gb|EES84817.1| RNA-binding protein [Bacteroides sp. 3_2_5]
 gi|263255796|gb|EEZ27142.1| RNA-binding protein [Bacteroides sp. 2_1_16]
 gi|301162818|emb|CBW22365.1| putative RNA-binding protein [Bacteroides fragilis 638R]
          Length = 707

 Score = 36.5 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 17/71 (23%)

Query: 6   RIIGIDPGLRRTGWGIV--DVAGDNLCFVSSGTIVS----CVRQSLAFRLCQLYEGLTDV 59
           R++GIDPG R TG  +V  D  G+    V +  I        +   A +L ++       
Sbjct: 314 RVMGIDPGFR-TGCKVVCLDAQGN---LVHNENIYPHPPVDKKTEAASKLRKM------- 362

Query: 60  IKNWRPEEAAV 70
           I+ ++ E  A+
Sbjct: 363 IEAYKIEAIAI 373


>gi|60681362|ref|YP_211506.1| putative RNA-binding protein [Bacteroides fragilis NCTC 9343]
 gi|60492796|emb|CAH07570.1| putative RNA-binding protein [Bacteroides fragilis NCTC 9343]
          Length = 707

 Score = 36.5 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 17/71 (23%)

Query: 6   RIIGIDPGLRRTGWGIV--DVAGDNLCFVSSGTIVS----CVRQSLAFRLCQLYEGLTDV 59
           R++GIDPG R TG  +V  D  G+    V +  I        +   A +L ++       
Sbjct: 314 RVMGIDPGFR-TGCKVVCLDAQGN---LVHNENIYPHPPVDKKTEAASKLRKM------- 362

Query: 60  IKNWRPEEAAV 70
           I+ ++ E  A+
Sbjct: 363 IEAYKIEAIAI 373


>gi|53713095|ref|YP_099087.1| RNA-binding protein [Bacteroides fragilis YCH46]
 gi|52215960|dbj|BAD48553.1| putative RNA binding protein with S1 RNA-binding domain
           [Bacteroides fragilis YCH46]
          Length = 707

 Score = 36.5 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 17/71 (23%)

Query: 6   RIIGIDPGLRRTGWGIV--DVAGDNLCFVSSGTIVS----CVRQSLAFRLCQLYEGLTDV 59
           R++GIDPG R TG  +V  D  G+    V +  I        +   A +L ++       
Sbjct: 314 RVMGIDPGFR-TGCKVVCLDAQGN---LVHNENIYPHPPVDKKTEAASKLRKM------- 362

Query: 60  IKNWRPEEAAV 70
           I+ ++ E  A+
Sbjct: 363 IEAYKIEAIAI 373


>gi|291279040|ref|YP_003495875.1| transcription accessory protein [Deferribacter desulfuricans SSM1]
 gi|290753742|dbj|BAI80119.1| transcription accessory protein [Deferribacter desulfuricans SSM1]
          Length = 707

 Score = 36.5 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 6/34 (17%)

Query: 6   RIIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTI 37
           RI+GIDP  R TG  +  VD  G     +S G I
Sbjct: 312 RIMGIDPAFR-TGCKYACVDETG---KLLSYGVI 341


>gi|297527129|ref|YP_003669153.1| Protein of unknown function DUF460 [Staphylothermus hellenicus DSM
           12710]
 gi|297256045|gb|ADI32254.1| Protein of unknown function DUF460 [Staphylothermus hellenicus DSM
           12710]
          Length = 671

 Score = 36.5 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 1/28 (3%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSS 34
           IIGIDPG+  TG  ++D+ G  L   SS
Sbjct: 258 IIGIDPGIS-TGIAVIDLDGTPLFLHSS 284


>gi|114799411|ref|YP_760995.1| hypothetical protein HNE_2300 [Hyphomonas neptunium ATCC 15444]
 gi|123128643|sp|Q0BZU8|RUVX_HYPNA RecName: Full=Putative Holliday junction resolvase
 gi|114739585|gb|ABI77710.1| conserved hypothetical protein TIGR00250 [Hyphomonas neptunium
          ATCC 15444]
          Length = 151

 Score = 36.5 bits (84), Expect = 1.5,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 6/50 (12%)

Query: 8  IGIDPGLRRTGWGIVDVAGDNLCFVSS--GTIVSCVRQSLAFRLCQLYEG 55
          +GIDPG    G      A D +  ++S   TI+         RL  +Y+ 
Sbjct: 16 LGIDPGTATIGVA----ATDRIRMMASPVETILKKKLAPSLERLLHIYDE 61


>gi|255008568|ref|ZP_05280694.1| RNA-binding protein [Bacteroides fragilis 3_1_12]
 gi|313146296|ref|ZP_07808489.1| RNA-binding protein [Bacteroides fragilis 3_1_12]
 gi|313135063|gb|EFR52423.1| RNA-binding protein [Bacteroides fragilis 3_1_12]
          Length = 707

 Score = 36.1 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 9/67 (13%)

Query: 6   RIIGIDPGLRRTGWGIV--DVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           R++GIDPG R TG  +V  D  G+    V +  I             +    L  +I+ +
Sbjct: 314 RVMGIDPGFR-TGCKVVCLDAQGN---LVHNENIYPHPPVDKKA---EAASKLRKMIEAY 366

Query: 64  RPEEAAV 70
           + E  A+
Sbjct: 367 KIEAIAI 373


>gi|253566729|ref|ZP_04844181.1| YhgF [Bacteroides sp. 3_2_5]
 gi|251944292|gb|EES84781.1| YhgF [Bacteroides sp. 3_2_5]
          Length = 222

 Score = 36.1 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 17/71 (23%)

Query: 6  RIIGIDPGLRRTGWGIV--DVAGDNLCFVSSGTIVS----CVRQSLAFRLCQLYEGLTDV 59
          R++GIDPG R TG  +V  D  G+    V +  I        +   A +L ++       
Sbjct: 34 RVMGIDPGFR-TGCKVVCLDAQGN---LVHNENIYPHPPVDKKTEAASKLRKM------- 82

Query: 60 IKNWRPEEAAV 70
          I+ ++ E  A+
Sbjct: 83 IEAYKIEAIAI 93


>gi|154504518|ref|ZP_02041256.1| hypothetical protein RUMGNA_02022 [Ruminococcus gnavus ATCC
          29149]
 gi|153795000|gb|EDN77420.1| hypothetical protein RUMGNA_02022 [Ruminococcus gnavus ATCC
          29149]
          Length = 148

 Score = 36.1 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 31/66 (46%), Gaps = 6/66 (9%)

Query: 5  IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
          +RI+G+D G +  G  I D  G     +++  I +  R+    +L +    + ++++ + 
Sbjct: 1  MRIMGLDYGTKTVGVAISDALG-----LTAQGIETIQRKE-ENKLRRTLARIEELVREYE 54

Query: 65 PEEAAV 70
           +   +
Sbjct: 55 VDTIVL 60


>gi|327438483|dbj|BAK14848.1| transcriptional accessory protein [Solibacillus silvestris StLB046]
          Length = 723

 Score = 36.1 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 29/74 (39%), Gaps = 15/74 (20%)

Query: 1   MRKSIRIIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTI--VSCVRQSLAFRLCQLYEGL 56
           MR  + ++G+DP  R TG    +VD  G     +  G I   +    S A         +
Sbjct: 316 MRGKM-VLGVDPAYR-TGCKLAVVDETG---KMIEVGVIYPHTTSDPSKAK------ATV 364

Query: 57  TDVIKNWRPEEAAV 70
             ++K +     A+
Sbjct: 365 KALLKKYPISIIAI 378


>gi|319654666|ref|ZP_08008745.1| transcription accessory protein [Bacillus sp. 2_A_57_CT2]
 gi|317393582|gb|EFV74341.1| transcription accessory protein [Bacillus sp. 2_A_57_CT2]
          Length = 725

 Score = 36.1 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 13/68 (19%)

Query: 7   IIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTI--VSCVRQSLAFRLCQLYEGLTDVIKN 62
           ++G+DP  R TG    +VD  G     +  G I     V ++   R     E +  ++  
Sbjct: 326 VLGVDPAYR-TGCKLAVVDETG---KVLDIGVIYPHPPVSKTKQAR-----EKVVHILNT 376

Query: 63  WRPEEAAV 70
           ++ E  A+
Sbjct: 377 YKVEMVAI 384


>gi|218264395|ref|ZP_03478252.1| hypothetical protein PRABACTJOHN_03948 [Parabacteroides johnsonii
          DSM 18315]
 gi|218222033|gb|EEC94683.1| hypothetical protein PRABACTJOHN_03948 [Parabacteroides johnsonii
          DSM 18315]
          Length = 320

 Score = 36.1 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 3/56 (5%)

Query: 7  IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
          ++GID G   T +G+VD  G     + S +I +     +   + +L  GL  VI  
Sbjct: 6  VVGIDIGGTNTVFGVVDARG---TILYSSSIKTGKYTDIDDYVSELANGLKLVIDQ 58


>gi|229527358|ref|ZP_04416750.1| transcription accessory protein [Vibrio cholerae 12129(1)]
 gi|229334990|gb|EEO00475.1| transcription accessory protein [Vibrio cholerae 12129(1)]
          Length = 773

 Score = 36.1 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 9/65 (13%)

Query: 8   IGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           +G+DPGLR TG    +VD  G     +++ TI     Q    R  Q    +  ++K +  
Sbjct: 329 LGLDPGLR-TGCKVAVVDATG---KVLATDTIYPHAPQHQYERAMQ---SIALLVKKFNV 381

Query: 66  EEAAV 70
           +  A+
Sbjct: 382 DLIAI 386


>gi|189459676|ref|ZP_03008461.1| hypothetical protein BACCOP_00304 [Bacteroides coprocola DSM 17136]
 gi|189433635|gb|EDV02620.1| hypothetical protein BACCOP_00304 [Bacteroides coprocola DSM 17136]
          Length = 711

 Score = 36.1 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 15/70 (21%)

Query: 6   RIIGIDPGLRRTGWGIV--DVAGDNLCFVSSGTIVSCVRQS---LAFRLCQLYEGLTDVI 60
           R +GIDPG R TG  +V  D  G     + +  I     +S   LA R       L  ++
Sbjct: 317 RTMGIDPGYR-TGCKVVCLDAQG---TLLHNEAIYPHPPKSETALAGR------KLVKLV 366

Query: 61  KNWRPEEAAV 70
           + ++ E  A+
Sbjct: 367 EQYKIEAIAI 376


>gi|301162739|emb|CBW22286.1| putative RNA-binding protein [Bacteroides fragilis 638R]
          Length = 222

 Score = 36.1 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 17/71 (23%)

Query: 6  RIIGIDPGLRRTGWGIV--DVAGDNLCFVSSGTIVS----CVRQSLAFRLCQLYEGLTDV 59
          R++GIDPG R TG  +V  D  G+    V +  I        +   A +L ++       
Sbjct: 34 RVMGIDPGFR-TGCKVVCLDAQGN---LVHNENIYPHPPVDKKTEAASKLRKM------- 82

Query: 60 IKNWRPEEAAV 70
          I+ ++ E  A+
Sbjct: 83 IEAYKIEAIAI 93


>gi|189485225|ref|YP_001956166.1| CRISPR-associated protein Csn1 [uncultured Termite group 1
          bacterium phylotype Rs-D17]
 gi|170287184|dbj|BAG13705.1| CRISPR-associated protein Csn1 [uncultured Termite group 1
          bacterium phylotype Rs-D17]
          Length = 1032

 Score = 36.1 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 9/51 (17%)

Query: 1  MRKSIRIIGIDPGLRRTGWGIVDVAG------DNLCFVSSGT-IVSCVRQS 44
          M+K  RI+G+D G+   GW +V+              + SG  I +     
Sbjct: 1  MKK--RILGLDIGIASVGWALVEFDDEFQDNKKKGTIIKSGVRIFTRAETP 49


>gi|291557518|emb|CBL34635.1| Transcriptional accessory protein [Eubacterium siraeum V10Sc8a]
          Length = 713

 Score = 36.1 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 47/118 (39%), Gaps = 29/118 (24%)

Query: 8   IGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIV-SCVRQSL--AFRLCQLYEGLTDVIKN 62
           +G DPG R TG    +VD  G     + +  +  +  +  +  A R+      + ++I+ 
Sbjct: 315 LGFDPGYR-TGCKVAVVDATG---KVLDTSVVYPTPPKSDIAGAERI------IKNLIEK 364

Query: 63  WRPEEAAV-------E-QVFVN------KDAVATLKLGQARAIAILSPALARIPVSEY 106
            + +  A+       E +VF+          V+ + + +A A    +  LA     EY
Sbjct: 365 HKVDIIAIGNGTASHESEVFMADLLKKIDRKVSYMVVSEAGASVYSASKLAAEEFPEY 422


>gi|291531019|emb|CBK96604.1| Transcriptional accessory protein [Eubacterium siraeum 70/3]
          Length = 713

 Score = 36.1 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 47/118 (39%), Gaps = 29/118 (24%)

Query: 8   IGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIV-SCVRQSL--AFRLCQLYEGLTDVIKN 62
           +G DPG R TG    +VD  G     + +  +  +  +  +  A R+      + ++I+ 
Sbjct: 315 LGFDPGYR-TGCKVAVVDATG---KVLDTSVVYPTPPKSDIAGAERI------IKNLIEK 364

Query: 63  WRPEEAAV-------E-QVFVN------KDAVATLKLGQARAIAILSPALARIPVSEY 106
            + +  A+       E +VF+          V+ + + +A A    +  LA     EY
Sbjct: 365 HKVDIIAIGNGTASHESEVFMADLLKKIDRKVSYMVVSEAGASVYSASKLAAEEFPEY 422


>gi|224368955|ref|YP_002603119.1| transcriptional accessory protein (S1 RNA binding domain protein)
           [Desulfobacterium autotrophicum HRM2]
 gi|223691672|gb|ACN14955.1| transcriptional accessory protein (S1 RNA binding domain protein)
           [Desulfobacterium autotrophicum HRM2]
          Length = 703

 Score = 36.1 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 24/65 (36%), Gaps = 8/65 (12%)

Query: 6   RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           R++ IDPG R TG  IV +       V  G I        A +       L  + +    
Sbjct: 313 RVLAIDPGFR-TGCKIVCLD-QQGTLVHHGVIYPFSDSDKAAK------TLKKLTREHET 364

Query: 66  EEAAV 70
           E  A+
Sbjct: 365 EAIAI 369


>gi|167749865|ref|ZP_02421992.1| hypothetical protein EUBSIR_00833 [Eubacterium siraeum DSM 15702]
 gi|167657177|gb|EDS01307.1| hypothetical protein EUBSIR_00833 [Eubacterium siraeum DSM 15702]
          Length = 713

 Score = 36.1 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 47/118 (39%), Gaps = 29/118 (24%)

Query: 8   IGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIV-SCVRQSL--AFRLCQLYEGLTDVIKN 62
           +G DPG R TG    +VD  G     + +  +  +  +  +  A R+      + ++I+ 
Sbjct: 315 LGFDPGYR-TGCKVAVVDATG---KVLDTSVVYPTPPKSDIAGAERI------IKNLIEK 364

Query: 63  WRPEEAAV-------E-QVFVN------KDAVATLKLGQARAIAILSPALARIPVSEY 106
            + +  A+       E +VF+          V+ + + +A A    +  LA     EY
Sbjct: 365 HKVDIIAIGNGTASHESEVFMADLLKKIDRKVSYMVVSEAGASVYSASKLAAEEFPEY 422


>gi|261378287|ref|ZP_05982860.1| CRISPR-associated protein, Csn1 family [Neisseria cinerea ATCC
          14685]
 gi|269145378|gb|EEZ71796.1| CRISPR-associated protein, Csn1 family [Neisseria cinerea ATCC
          14685]
          Length = 1082

 Score = 36.1 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 3/38 (7%)

Query: 2  RKSIR-IIGIDPGLRRTGWGI--VDVAGDNLCFVSSGT 36
             +  I+G+D G+   GW I  +D   + +  +  G 
Sbjct: 6  PNPMNYILGLDIGIASVGWAIVEIDEEENPIRLIDLGV 43


>gi|16082823|ref|NP_395377.1| hypothetical protein YPMT1.38c [Yersinia pestis CO92]
 gi|31795342|ref|NP_857794.1| hypothetical protein Y1010 [Yersinia pestis KIM]
 gi|45478635|ref|NP_995491.1| hypothetical protein YP_pMT048 [Yersinia pestis biovar Microtus
           str. 91001]
 gi|108793571|ref|YP_636721.1| hypothetical protein YPA_MT0039 [Yersinia pestis Antiqua]
 gi|108793773|ref|YP_636611.1| hypothetical protein YPN_MT0041 [Yersinia pestis Nepal516]
 gi|149192758|ref|YP_001293989.1| hypothetical protein YPE_4275 [Yersinia pestis CA88-4125]
 gi|167466704|ref|ZP_02331408.1| hypothetical protein YpesF_02170 [Yersinia pestis FV-1]
 gi|229896976|ref|ZP_04512135.1| hypothetical protein YPS_4820 [Yersinia pestis Pestoides A]
 gi|229897737|ref|ZP_04512892.1| hypothetical protein YPH_4770 [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229900313|ref|ZP_04515448.1| hypothetical protein YPF_4840 [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229904836|ref|ZP_04519946.1| hypothetical protein YP516_4677 [Yersinia pestis Nepal516]
 gi|294502027|ref|YP_003565764.1| hypothetical protein YPZ3_pMT0035 [Yersinia pestis Z176003]
 gi|3883012|gb|AAC82672.1| unknown [Yersinia pestis KIM 10]
 gi|5834723|emb|CAB55220.1| hypothetical protein YPMT1.38c [Yersinia pestis CO92]
 gi|45357288|gb|AAS58682.1| hypothetical protein YP_pMT048 [Yersinia pestis biovar Microtus
           str. 91001]
 gi|108777837|gb|ABG20355.1| hypothetical protein YPN_MT0041 [Yersinia pestis Nepal516]
 gi|108782118|gb|ABG16175.1| hypothetical protein YPA_MT0039 [Yersinia pestis Antiqua]
 gi|148872416|gb|ABR14905.1| hypothetical protein YPMT1.38c [Yersinia pestis CA88-4125]
 gi|229678151|gb|EEO74257.1| hypothetical protein YP516_4677 [Yersinia pestis Nepal516]
 gi|229686672|gb|EEO78753.1| hypothetical protein YPF_4840 [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229693318|gb|EEO83368.1| hypothetical protein YPH_4770 [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229700012|gb|EEO88052.1| hypothetical protein YPS_4820 [Yersinia pestis Pestoides A]
 gi|262363921|gb|ACY60640.1| hypothetical protein YPD4_pMT0035 [Yersinia pestis D106004]
 gi|262364077|gb|ACY64413.1| hypothetical protein YPD8_pMT0035 [Yersinia pestis D182038]
 gi|294352498|gb|ADE66554.1| hypothetical protein YPZ3_pMT0035 [Yersinia pestis Z176003]
 gi|320017563|gb|ADW01133.1| hypothetical protein YPC_4805 [Yersinia pestis biovar Medievalis
           str. Harbin 35]
          Length = 189

 Score = 36.1 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 58/175 (33%), Gaps = 34/175 (19%)

Query: 1   MRKSIRIIGIDPGLRRTGWGI--VDVAGDNLCFVSSGTIVSCVR----------QSLAFR 48
           M K+IR++G+DP +   G  I  +D+  D L       + +               L  R
Sbjct: 1   MSKTIRVVGVDPSMSNFGLAIGTLDLETDKLDIHGLTLVETKAGGNKKTVRVNSDDL-RR 59

Query: 49  LCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQ-ARAIAILSPALARIPVSEYA 107
             +++     +I+           VF      +     Q +  I I   A    P+ +  
Sbjct: 60  ANEIWRTAKPIIEQAH-------MVFCELPVGSQSSRAQTSYGICIGVLACVDKPLIQVT 112

Query: 108 PNTIKKAVIGVGHGDKKQIHMMLKMLMPESF-------------FKGKDAADALA 149
           PN IK  V       K++I        P +               K +  ADA+A
Sbjct: 113 PNEIKHYVGNKLTTSKEEIIQWATQKQPNAPWLRRKQSGKEVLVNKNEHLADAVA 167


>gi|291539698|emb|CBL12809.1| conserved hypothetical protein TIGR00250 [Roseburia intestinalis
          XB6B4]
          Length = 144

 Score = 36.1 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 26/68 (38%), Gaps = 10/68 (14%)

Query: 5  IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSG--TIVSCVRQSLAFRLCQLYEGLTDVIKN 62
          +RI+G+D G +  G  +     D L   + G   I       L   L ++      +I  
Sbjct: 1  MRILGLDFGSKTVGLAV----SDELLLTAQGLEIIRRQSPNKLRQTLARI----EAIIAE 52

Query: 63 WRPEEAAV 70
          ++ E   +
Sbjct: 53 YQVECIVL 60


>gi|52549635|gb|AAU83484.1| conserved hypothetical protein [uncultured archaeon GZfos28G7]
          Length = 431

 Score = 36.1 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 1/25 (4%)

Query: 7  IIGIDPGLRRTGWGIVDVAGDNLCF 31
          I+GIDPG    G  I+D+ G+ +  
Sbjct: 13 IVGIDPGTTI-GVAIIDLEGNPIEV 36


>gi|325568881|ref|ZP_08145174.1| crossover junction endodeoxyribonuclease [Enterococcus
           casseliflavus ATCC 12755]
 gi|325157919|gb|EGC70075.1| crossover junction endodeoxyribonuclease [Enterococcus
           casseliflavus ATCC 12755]
          Length = 143

 Score = 36.1 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 37/105 (35%), Gaps = 18/105 (17%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQ-SLAFRLCQLYEGLTDVIKNW 63
           +RI+G+D G R  G  + D  G     +    I     + +        Y+ L +++K +
Sbjct: 1   MRIMGLDVGSRTVGVAVSDPMGWTAQGIE--IIRINEDEGNFG------YDRLAELVKEY 52

Query: 64  RPEEAAVEQVFVNKDAVATLK----LGQARAIAILSPALARIPVS 104
                 V    + K+   T+        A   AI       +PV 
Sbjct: 53  EVSRFVV---GLPKNMNNTIGPRAEASMAYGAAI--EQQFGLPVV 92


>gi|160700716|ref|YP_001552396.1| gp67 [Mycobacterium phage Giles]
 gi|159136666|gb|ABW88462.1| gp67 [Mycobacterium phage Giles]
          Length = 230

 Score = 36.1 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 16/95 (16%), Positives = 31/95 (32%), Gaps = 7/95 (7%)

Query: 64  RPEEAAVEQVFVNKD-AVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
             + A +E      +   +             +    ++P++  +P        G G   
Sbjct: 99  HIDLAVIEGPIYGGNFMPSYFDRAALFHAVYGALDSRKVPIAVISPTAGHVFTTGKGSLP 158

Query: 123 KKQ------IHMMLKMLMPESFFKGKDAADALAIA 151
           K        I   ++ L+P+      D ADAL +A
Sbjct: 159 KDPKRLKGLILDSVRALVPDVHVANDDIADALGLA 193


>gi|315636507|ref|ZP_07891743.1| S1 RNA binding domain protein [Arcobacter butzleri JV22]
 gi|315479156|gb|EFU69853.1| S1 RNA binding domain protein [Arcobacter butzleri JV22]
          Length = 701

 Score = 36.1 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 32/67 (47%), Gaps = 11/67 (16%)

Query: 7   IIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIV-SCVRQSLAFRLCQLYEGLTDVIKNW 63
           I+G+DPG  +TG    ++D  G    ++ S  I  +  ++     +    + + D+IK +
Sbjct: 318 ILGMDPGY-KTGCKLAVIDENG---LYLDSAVIYPTKPKED----IVSSSKVVLDLIKKY 369

Query: 64  RPEEAAV 70
           +    A+
Sbjct: 370 KITTIAI 376


>gi|290968959|ref|ZP_06560494.1| conserved hypothetical protein [Megasphaera genomosp. type_1 str.
          28L]
 gi|290780915|gb|EFD93508.1| conserved hypothetical protein [Megasphaera genomosp. type_1 str.
          28L]
          Length = 138

 Score = 36.1 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 27/72 (37%), Gaps = 12/72 (16%)

Query: 7  IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCV------RQSLAFRLCQLYEGLTDVI 60
          I  IDPG  +TG  ++   G     V    I +         ++  + +  +  G     
Sbjct: 2  IFSIDPGSEKTGIAVIRQDG---TLVEKHIIPTAALLSVLQDKTQQYTIAHIVMGDG--- 55

Query: 61 KNWRPEEAAVEQ 72
           N +P +  VEQ
Sbjct: 56 TNHKPLQVQVEQ 67


>gi|157738220|ref|YP_001490904.1| S1 RNA-binding domain-containing protein [Arcobacter butzleri
           RM4018]
 gi|157700074|gb|ABV68234.1| S1 RNA binding domain protein [Arcobacter butzleri RM4018]
          Length = 702

 Score = 36.1 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 32/67 (47%), Gaps = 11/67 (16%)

Query: 7   IIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIV-SCVRQSLAFRLCQLYEGLTDVIKNW 63
           I+G+DPG  +TG    ++D  G    ++ S  I  +  ++     +    + + D+IK +
Sbjct: 318 ILGMDPGY-KTGCKLAVIDENG---LYLDSAVIYPTKPKED----IVSSSKVVLDLIKKY 369

Query: 64  RPEEAAV 70
           +    A+
Sbjct: 370 KITTIAI 376


>gi|189490380|ref|YP_001956948.1| hypothetical protein 201phi2-1p225 [Pseudomonas phage 201phi2-1]
 gi|164609445|gb|ABY63054.1| hypothetical protein 201phi2-1p225 [Pseudomonas phage 201phi2-1]
          Length = 187

 Score = 36.1 bits (83), Expect = 1.9,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 65/186 (34%), Gaps = 42/186 (22%)

Query: 2   RKSIRIIGIDPGLRRTGW--------G---IVD-VAGDNLCFVSSGTIVSCVRQSLAF-- 47
            +  RI G DPG    G         G   IV  V  + L     G       + +A   
Sbjct: 8   NEPFRIAGFDPG-ANLGLTYLEDALDGSNPIVRRVETEKLNPAEYG------YKEIAEVH 60

Query: 48  -----RLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALAR-- 100
                RL  +Y+ +T  ++  +P    VE  ++ + A A   L +   +   +       
Sbjct: 61  GNRVVRLMIMYDRVTQFLREVKPHGVVVEGNYLGRFANAFGSLVECVQVIRSAVYAYDPF 120

Query: 101 IPVSEYAPNTIKKAVI-----GVGHGDKKQIHMMLKML--MPESFFKGKD----AADALA 149
           + +    P T+K  +      G    DK+ +   L  L  +        D    + D++A
Sbjct: 121 MTLHLVDPTTVKTNIGMVKIRGT---DKEDVRKALSNLKSLDWDGINIDDLDEHSIDSVA 177

Query: 150 IAVCHA 155
           IA  +A
Sbjct: 178 IAYYYA 183


>gi|126466187|ref|YP_001041296.1| hypothetical protein Smar_1297 [Staphylothermus marinus F1]
 gi|126015010|gb|ABN70388.1| Protein of unknown function DUF460 [Staphylothermus marinus F1]
          Length = 678

 Score = 36.1 bits (83), Expect = 1.9,   Method: Composition-based stats.
 Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNL 29
           IIGIDPG+  TG  ++D+ G  L
Sbjct: 258 IIGIDPGIS-TGIAVIDLEGTPL 279


>gi|257456747|ref|ZP_05621933.1| CRISPR-associated protein, Csn1 family [Treponema vincentii ATCC
          35580]
 gi|257445851|gb|EEV20908.1| CRISPR-associated protein, Csn1 family [Treponema vincentii ATCC
          35580]
          Length = 281

 Score = 36.1 bits (83), Expect = 1.9,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 2/32 (6%)

Query: 5  IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGT 36
          ++ +G+D G    GWGIVD   + +     G 
Sbjct: 1  MKTLGLDIGTNSIGWGIVDETANKIE--DCGV 30


>gi|160915782|ref|ZP_02077990.1| hypothetical protein EUBDOL_01797 [Eubacterium dolichum DSM 3991]
 gi|158432258|gb|EDP10547.1| hypothetical protein EUBDOL_01797 [Eubacterium dolichum DSM 3991]
          Length = 1096

 Score = 36.1 bits (83), Expect = 1.9,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 17/30 (56%), Gaps = 2/30 (6%)

Query: 7  IIGIDPGLRRTGWGIVDVAGDNLCFVSSGT 36
          ++G+D G+   G+GI+D+    +  V  G 
Sbjct: 10 VLGLDIGITSVGFGIIDLDESEI--VDYGV 37


>gi|59710727|ref|YP_203503.1| transcriptional accessory protein [Vibrio fischeri ES114]
 gi|59478828|gb|AAW84615.1| predicted transcriptional accessory protein [Vibrio fischeri ES114]
          Length = 771

 Score = 36.1 bits (83), Expect = 1.9,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 9/65 (13%)

Query: 8   IGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           +G+DPGLR TG    +VD  G     +++ TI      +   +  Q+   +  +IK    
Sbjct: 326 LGLDPGLR-TGTKVAVVDATG---KVLATDTIYPNQPHNQIAKSAQI---IEALIKQHNV 378

Query: 66  EEAAV 70
           +  A+
Sbjct: 379 DLIAI 383


>gi|301063038|ref|ZP_07203603.1| phosphotransferase enzyme family protein [delta proteobacterium
           NaphS2]
 gi|300442919|gb|EFK07119.1| phosphotransferase enzyme family protein [delta proteobacterium
           NaphS2]
          Length = 329

 Score = 36.1 bits (83), Expect = 1.9,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 25/68 (36%), Gaps = 6/68 (8%)

Query: 20  GIVDVAGDNLCFVSSG--TIVSCVRQSLAFRLC-QLYEGLTDVIKNWRPEEAAVEQVFVN 76
           G +D  G     +     +++      L   L  ++YE   +++KN  P+  A    F  
Sbjct: 203 GFIDWQGGRAGPLGYDLASLLLDPYVRLPRHLQQEIYETYLEILKNHHPDLVA---PFER 259

Query: 77  KDAVATLK 84
                 ++
Sbjct: 260 DYPYLAIQ 267


>gi|197334228|ref|YP_002154889.1| protein YhgF [Vibrio fischeri MJ11]
 gi|197315718|gb|ACH65165.1| protein YhgF [Vibrio fischeri MJ11]
          Length = 771

 Score = 36.1 bits (83), Expect = 1.9,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 9/65 (13%)

Query: 8   IGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           +G+DPGLR TG    +VD  G     +++ TI      +   +  Q+   +  +IK    
Sbjct: 326 LGLDPGLR-TGTKVAVVDATG---KVLATDTIYPNQPHNQIAKSAQI---IEALIKQHNV 378

Query: 66  EEAAV 70
           +  A+
Sbjct: 379 DLIAI 383


>gi|169350927|ref|ZP_02867865.1| hypothetical protein CLOSPI_01704 [Clostridium spiroforme DSM 1552]
 gi|169291989|gb|EDS74122.1| hypothetical protein CLOSPI_01704 [Clostridium spiroforme DSM 1552]
          Length = 714

 Score = 36.1 bits (83), Expect = 1.9,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 36/75 (48%), Gaps = 12/75 (16%)

Query: 1   MRKSIR---IIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEG 55
           M+  ++   ++G+DP  R TG    +VD  G  L  +     ++  + +   +  ++   
Sbjct: 308 MQAPLKDKMVLGVDPAYR-TGCKLAVVDQTGKVLK-IDK-VFITIPKDN-YDKEKKI--- 360

Query: 56  LTDVIKNWRPEEAAV 70
           L D+IK ++ E  A+
Sbjct: 361 LLDIIKTYKIEIIAI 375


>gi|291549894|emb|CBL26156.1| conserved hypothetical protein TIGR00250 [Ruminococcus torques
          L2-14]
          Length = 145

 Score = 35.7 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 34/69 (49%), Gaps = 11/69 (15%)

Query: 5  IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
          +R++G+D G +  G  I D  G     +++  I +  R+    +L +    + ++IK ++
Sbjct: 1  MRVMGLDYGTKTVGVAISDPLG-----LTAQGIETIQRKE-ENKLRRTCARIEELIKEYQ 54

Query: 65 PEEAAVEQV 73
               VE++
Sbjct: 55 -----VEKI 58


>gi|154491755|ref|ZP_02031381.1| hypothetical protein PARMER_01371 [Parabacteroides merdae ATCC
          43184]
 gi|154087996|gb|EDN87041.1| hypothetical protein PARMER_01371 [Parabacteroides merdae ATCC
          43184]
          Length = 320

 Score = 35.7 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 3/56 (5%)

Query: 7  IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
          ++GID G   T +G+VD  G     + S +I +     +   + +L  GL  VI  
Sbjct: 6  VVGIDIGGTNTVFGVVDARG---TILYSSSIKTGKYTDVDDYVSELANGLKLVIDQ 58


>gi|156972940|ref|YP_001443847.1| transcriptional accessory protein [Vibrio harveyi ATCC BAA-1116]
 gi|156524534|gb|ABU69620.1| hypothetical protein VIBHAR_00618 [Vibrio harveyi ATCC BAA-1116]
          Length = 766

 Score = 35.7 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 9/65 (13%)

Query: 8   IGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           +G+DPGLR TG    IVD  G     +++ TI     Q    +  Q+   +  +++ +  
Sbjct: 322 LGLDPGLR-TGSKIAIVDPTG---KVLATETIYPHPPQKQYDKSAQI---VDQLVRKYNV 374

Query: 66  EEAAV 70
           +  A+
Sbjct: 375 DLIAI 379


>gi|306827781|ref|ZP_07461052.1| YhgF like protein [Streptococcus pyogenes ATCC 10782]
 gi|304430005|gb|EFM33043.1| YhgF like protein [Streptococcus pyogenes ATCC 10782]
          Length = 710

 Score = 35.7 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 7/66 (10%)

Query: 7   IIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++G DP  R TG    IVD  G     +++  I      S   ++    E LT +I+ ++
Sbjct: 311 VLGFDPAFR-TGAKLAIVDQTG---KLLTTQVIYPVAPAS-QTKIQAAKETLTQLIETYQ 365

Query: 65  PEEAAV 70
            +  A+
Sbjct: 366 IDIIAI 371


>gi|218132863|ref|ZP_03461667.1| hypothetical protein BACPEC_00724 [Bacteroides pectinophilus ATCC
          43243]
 gi|217991736|gb|EEC57740.1| hypothetical protein BACPEC_00724 [Bacteroides pectinophilus ATCC
          43243]
          Length = 139

 Score = 35.7 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 5  IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDV 59
          +RI+G+D G +  G  + D  G  +  +   TI       +   L ++ E + ++
Sbjct: 1  MRILGLDYGTKTVGVAVTDPLGMTVQPLE--TITRDSDSKIRPTLRRIEEIIKEL 53


>gi|317154143|ref|YP_004122191.1| Holliday junction resolvase YqgF [Desulfovibrio aespoeensis Aspo-2]
 gi|316944394|gb|ADU63445.1| Holliday junction resolvase YqgF [Desulfovibrio aespoeensis Aspo-2]
          Length = 138

 Score = 35.7 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 14/102 (13%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQ--LYEGLTDVIKN 62
           +R +GID GL+R G  I D +G          I+     +L  R  +  L+E + ++I+ 
Sbjct: 1   MRALGIDFGLKRVGLAISDRSG----------ILVSPYLTL-ERTTRDALFEAIIEIIRQ 49

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVS 104
              E   V  + ++ D   TL   QAR  A        +P+ 
Sbjct: 50  ESVEAIVV-GLPLSMDGEDTLTTRQARNFAQSLGRRTDLPIH 90


>gi|209559042|ref|YP_002285514.1| hypothetical protein Spy49_0490 [Streptococcus pyogenes NZ131]
 gi|209540243|gb|ACI60819.1| hypothetical protein Spy49_0490 [Streptococcus pyogenes NZ131]
          Length = 710

 Score = 35.7 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 7/66 (10%)

Query: 7   IIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++G DP  R TG    IVD  G     +++  I      S   ++    E LT +I+ ++
Sbjct: 311 VLGFDPAFR-TGAKLAIVDQTG---KLLTTQVIYPVAPAS-QTKIQAAKETLTQLIETYQ 365

Query: 65  PEEAAV 70
            +  A+
Sbjct: 366 IDIIAI 371


>gi|139474204|ref|YP_001128920.1| transcription accessory protein [Streptococcus pyogenes str.
           Manfredo]
 gi|134272451|emb|CAM30708.1| putative transcription accessory protein [Streptococcus pyogenes
           str. Manfredo]
          Length = 710

 Score = 35.7 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 7/66 (10%)

Query: 7   IIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++G DP  R TG    IVD  G     +++  I      S   ++    E LT +I+ ++
Sbjct: 311 VLGFDPAFR-TGAKLAIVDQTG---KLLTTQVIYPVAPAS-QTKIQAAKETLTQLIETYQ 365

Query: 65  PEEAAV 70
            +  A+
Sbjct: 366 IDIIAI 371


>gi|19745695|ref|NP_606831.1| hypothetical protein spyM18_0648 [Streptococcus pyogenes MGAS8232]
 gi|19747830|gb|AAL97330.1| conserved hypothetical protein [Streptococcus pyogenes MGAS8232]
          Length = 710

 Score = 35.7 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 7/66 (10%)

Query: 7   IIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++G DP  R TG    IVD  G     +++  I      S   ++    E LT +I+ ++
Sbjct: 311 VLGFDPAFR-TGAKLAIVDQTG---KLLTTQVIYPVAPAS-QTKIQAAKETLTQLIETYQ 365

Query: 65  PEEAAV 70
            +  A+
Sbjct: 366 IDIIAI 371


>gi|332163332|ref|YP_004299909.1| putative transcription accessory protein [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|325667562|gb|ADZ44206.1| putative transcription accessory protein [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|330862987|emb|CBX73120.1| protein yhgF [Yersinia enterocolitica W22703]
          Length = 794

 Score = 35.7 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 14/72 (19%)

Query: 1   MRKSIRIIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTD 58
           MR ++   G+DPGLR TG    +VD  G     V+  TI     Q+           +  
Sbjct: 325 MRATM---GLDPGLR-TGVKVAVVDATG---KLVAYDTIYPHTGQAAKA-----AAVVAA 372

Query: 59  VIKNWRPEEAAV 70
           +    + E  A+
Sbjct: 373 LCIKHQVELVAI 384


>gi|240145916|ref|ZP_04744517.1| putative holliday junction resolvase [Roseburia intestinalis
          L1-82]
 gi|257201981|gb|EEV00266.1| putative holliday junction resolvase [Roseburia intestinalis
          L1-82]
 gi|291535170|emb|CBL08282.1| conserved hypothetical protein TIGR00250 [Roseburia intestinalis
          M50/1]
          Length = 144

 Score = 35.7 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 26/68 (38%), Gaps = 10/68 (14%)

Query: 5  IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSG--TIVSCVRQSLAFRLCQLYEGLTDVIKN 62
          +RI+G+D G +  G  +     D L   + G   I       L   L ++      +I  
Sbjct: 1  MRILGLDFGSKTVGVAV----SDELLLTAQGLEIIRRQSPNKLRQTLARI----EAIIAE 52

Query: 63 WRPEEAAV 70
          ++ E   +
Sbjct: 53 YQVECIVL 60


>gi|15674668|ref|NP_268842.1| hypothetical protein SPy_0580 [Streptococcus pyogenes M1 GAS]
 gi|21909945|ref|NP_664213.1| putative transcriptional regulator [Streptococcus pyogenes MGAS315]
 gi|28896358|ref|NP_802708.1| hypothetical protein SPs1446 [Streptococcus pyogenes SSI-1]
 gi|71903127|ref|YP_279931.1| transcription accessory protein [Streptococcus pyogenes MGAS6180]
 gi|71910293|ref|YP_281844.1| transcription accessory protein [Streptococcus pyogenes MGAS5005]
 gi|13621785|gb|AAK33563.1| conserved hypothetical protein [Streptococcus pyogenes M1 GAS]
 gi|21904133|gb|AAM79016.1| putative transcriptional regulator [Streptococcus pyogenes MGAS315]
 gi|28811609|dbj|BAC64541.1| conserved hypothetical protein [Streptococcus pyogenes SSI-1]
 gi|71802222|gb|AAX71575.1| transcription accessory protein [Streptococcus pyogenes MGAS6180]
 gi|71853075|gb|AAZ51098.1| transcription accessory protein [Streptococcus pyogenes MGAS5005]
          Length = 710

 Score = 35.7 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 7/66 (10%)

Query: 7   IIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++G DP  R TG    IVD  G     +++  I      S   ++    E LT +I+ ++
Sbjct: 311 VLGFDPAFR-TGAKLAIVDQTG---KLLTTQVIYPVAPAS-QTKIQAAKETLTQLIETYQ 365

Query: 65  PEEAAV 70
            +  A+
Sbjct: 366 IDIIAI 371


>gi|238797303|ref|ZP_04640804.1| hypothetical protein ymoll0001_3680 [Yersinia mollaretii ATCC
           43969]
 gi|238718940|gb|EEQ10755.1| hypothetical protein ymoll0001_3680 [Yersinia mollaretii ATCC
           43969]
          Length = 788

 Score = 35.7 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 14/72 (19%)

Query: 1   MRKSIRIIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTD 58
           MR ++   G+DPGLR TG    +VD  G     V+  TI     Q+           +  
Sbjct: 325 MRATM---GLDPGLR-TGVKVAVVDATG---KLVAYDTIYPHTGQAAKA-----AATVAA 372

Query: 59  VIKNWRPEEAAV 70
           +    + E  A+
Sbjct: 373 LCIKHQVELVAI 384


>gi|282880052|ref|ZP_06288774.1| CRISPR-associated protein, Csn1 family [Prevotella timonensis
          CRIS 5C-B1]
 gi|281306166|gb|EFA98204.1| CRISPR-associated protein, Csn1 family [Prevotella timonensis
          CRIS 5C-B1]
          Length = 1218

 Score = 35.7 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 30/79 (37%), Gaps = 11/79 (13%)

Query: 1  MRKSIRIIGIDPGLRRTGWGIVDVA--GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTD 58
          M K  RI+G+D G    GW +VD      +   +  G ++            ++ +G+  
Sbjct: 1  MNK--RILGLDTGTNSLGWAVVDWDEHAQSYELIKYGDVIFQEG-------VKIEKGIES 51

Query: 59 VIKNWRPEEAAVEQVFVNK 77
               R    A+ + +  +
Sbjct: 52 SKAAERSGYKAIRKQYFRR 70


>gi|282878504|ref|ZP_06287286.1| CRISPR-associated protein, Csn1 family [Prevotella buccalis ATCC
          35310]
 gi|281299376|gb|EFA91763.1| CRISPR-associated protein, Csn1 family [Prevotella buccalis ATCC
          35310]
          Length = 1218

 Score = 35.7 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 30/79 (37%), Gaps = 11/79 (13%)

Query: 1  MRKSIRIIGIDPGLRRTGWGIVDVA--GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTD 58
          M K  RI+G+D G    GW +VD      +   +  G ++            ++ +G+  
Sbjct: 1  MNK--RILGLDTGTNSLGWAVVDWDEHAQSYELIKYGDVIFQEG-------VKIEKGIES 51

Query: 59 VIKNWRPEEAAVEQVFVNK 77
               R    A+ + +  +
Sbjct: 52 SKAAERSGYKAIRKQYFRR 70


>gi|262068091|ref|ZP_06027703.1| glucokinase [Fusobacterium periodonticum ATCC 33693]
 gi|291378177|gb|EFE85695.1| glucokinase [Fusobacterium periodonticum ATCC 33693]
          Length = 315

 Score = 35.7 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 3/55 (5%)

Query: 8  IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
          IGID G   T  G+VD+ G+    + S  I +  +Q +   L +++E   +++  
Sbjct: 5  IGIDLGGTNTKIGVVDLEGN---LIISKIIKTHSKQKVDKTLERIWETSKELLAK 56


>gi|50913850|ref|YP_059822.1| transcription accessory protein [Streptococcus pyogenes MGAS10394]
 gi|50902924|gb|AAT86639.1| transcription accessory protein [Streptococcus pyogenes MGAS10394]
          Length = 710

 Score = 35.7 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 7/66 (10%)

Query: 7   IIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++G DP  R TG    IVD  G     +++  I      S   ++    E LT +I+ ++
Sbjct: 311 VLGFDPAFR-TGAKLAIVDQTG---KLLTTQVIYPVAPAS-QTKIQAAKETLTQLIETYQ 365

Query: 65  PEEAAV 70
            +  A+
Sbjct: 366 IDIIAI 371


>gi|303240037|ref|ZP_07326559.1| cobalamin synthesis protein P47K [Acetivibrio cellulolyticus CD2]
 gi|302592516|gb|EFL62242.1| cobalamin synthesis protein P47K [Acetivibrio cellulolyticus CD2]
          Length = 344

 Score = 35.7 bits (82), Expect = 2.2,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 40/120 (33%), Gaps = 32/120 (26%)

Query: 8   IGIDPGLRRTGWG-IVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           IGID        G I+   G ++  ++SG I   +    +         + D+I+++ P+
Sbjct: 44  IGID--------GNILKETGVSVREINSGCICCTLVGDFSK-------AIKDIIESYHPD 88

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
              +E            KL               + V       IK AV+      K QI
Sbjct: 89  RIIIE-------PSGVGKLSDVVKACEAREISHLVEV------KIKLAVVD---ASKYQI 132


>gi|318607824|emb|CBY29322.1| transcription accessory protein (S1 RNA-binding domain) [Yersinia
           enterocolitica subsp. palearctica Y11]
          Length = 794

 Score = 35.7 bits (82), Expect = 2.2,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 14/72 (19%)

Query: 1   MRKSIRIIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTD 58
           MR ++   G+DPGLR TG    +VD  G     V+  TI     Q+           +  
Sbjct: 325 MRATM---GLDPGLR-TGVKVAVVDATG---KLVAYDTIYPHTGQAAKA-----AAVVAA 372

Query: 59  VIKNWRPEEAAV 70
           +    + E  A+
Sbjct: 373 LCIKHQVELVAI 384


>gi|123444176|ref|YP_001008146.1| putative transcription accessory protein [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|122091137|emb|CAL14020.1| putative transcription accessory protein [Yersinia enterocolitica
           subsp. enterocolitica 8081]
          Length = 794

 Score = 35.7 bits (82), Expect = 2.2,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 14/72 (19%)

Query: 1   MRKSIRIIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTD 58
           MR ++   G+DPGLR TG    +VD  G     V+  TI     Q+           +  
Sbjct: 325 MRATM---GLDPGLR-TGVKVAVVDATG---KLVAYDTIYPHTGQAAKA-----AAVVAA 372

Query: 59  VIKNWRPEEAAV 70
           +    + E  A+
Sbjct: 373 LCIKHQVELVAI 384


>gi|269959402|ref|ZP_06173785.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269835839|gb|EEZ89915.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 773

 Score = 35.7 bits (82), Expect = 2.2,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 9/65 (13%)

Query: 8   IGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           +G+DPGLR TG    IVD  G     +++ TI     Q    +  Q+   +  +++ +  
Sbjct: 329 LGLDPGLR-TGSKIAIVDPTG---KVLATETIYPHPPQKQYDKSAQI---VDQLVRKYNV 381

Query: 66  EEAAV 70
           +  A+
Sbjct: 382 DLIAI 386


>gi|116510965|ref|YP_808181.1| RNase H-like ribonuclease [Lactococcus lactis subsp. cremoris
          SK11]
 gi|123125957|sp|Q032W3|RUVX_LACLS RecName: Full=Putative Holliday junction resolvase
 gi|116106619|gb|ABJ71759.1| RNase H-like ribonuclease [Lactococcus lactis subsp. cremoris
          SK11]
          Length = 143

 Score = 35.7 bits (82), Expect = 2.2,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 7/65 (10%)

Query: 6  RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
          RI+G+D G +  G  + D+ G     V      +    S A  L   ++ L  +IK ++P
Sbjct: 4  RILGLDVGTKTVGVSVSDLLGMTAQPVE-----TIKIDSEAGELG--FDRLAVLIKEYKP 56

Query: 66 EEAAV 70
          E+  +
Sbjct: 57 EKVVL 61


>gi|313892334|ref|ZP_07825926.1| conserved hypothetical protein [Dialister microaerophilus UPII
          345-E]
 gi|313119193|gb|EFR42393.1| conserved hypothetical protein [Dialister microaerophilus UPII
          345-E]
          Length = 144

 Score = 35.7 bits (82), Expect = 2.3,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 13/64 (20%)

Query: 7  IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
          I+ IDPG  +TG  +V   G+    V    I +            L E +  + K +   
Sbjct: 2  ILSIDPGSEKTGIAVVKKDGN---LVMKKIIKTE----------CLEEEIKILSKKFEII 48

Query: 67 EAAV 70
          E A+
Sbjct: 49 ETAI 52


>gi|94993898|ref|YP_601996.1| transcription accessory protein [Streptococcus pyogenes MGAS10750]
 gi|94547406|gb|ABF37452.1| transcription accessory protein [Streptococcus pyogenes MGAS10750]
          Length = 717

 Score = 35.7 bits (82), Expect = 2.3,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 7/66 (10%)

Query: 7   IIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++G DP  R TG    IVD  G     +++  I      S   ++    E LT +I+ ++
Sbjct: 318 VLGFDPAFR-TGAKLAIVDQTG---KLLTTQVIYPVAPAS-QTKIQAAKETLTQLIETYQ 372

Query: 65  PEEAAV 70
            +  A+
Sbjct: 373 IDIIAI 378


>gi|94988103|ref|YP_596204.1| transcription accessory protein [Streptococcus pyogenes MGAS9429]
 gi|94991990|ref|YP_600089.1| transcription accessory protein [Streptococcus pyogenes MGAS2096]
 gi|94541611|gb|ABF31660.1| transcription accessory protein (S1 RNA binding domain)
           [Streptococcus pyogenes MGAS9429]
 gi|94545498|gb|ABF35545.1| transcription accessory protein [Streptococcus pyogenes MGAS2096]
          Length = 717

 Score = 35.7 bits (82), Expect = 2.3,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 7/66 (10%)

Query: 7   IIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++G DP  R TG    IVD  G     +++  I      S   ++    E LT +I+ ++
Sbjct: 318 VLGFDPAFR-TGAKLAIVDQTG---KLLTTQVIYPVAPAS-QTKIQAAKETLTQLIETYQ 372

Query: 65  PEEAAV 70
            +  A+
Sbjct: 373 IDIIAI 378


>gi|328471699|gb|EGF42576.1| hypothetical protein VP10329_01050 [Vibrio parahaemolyticus 10329]
          Length = 773

 Score = 35.7 bits (82), Expect = 2.3,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 9/65 (13%)

Query: 8   IGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           +G+DPGLR TG    IVD  G     +++ TI     Q    +  Q+   +  +++ +  
Sbjct: 329 LGLDPGLR-TGSKIAIVDPTG---KVLATETIYPHPPQKQYDKSAQI---VDQLVRKYNV 381

Query: 66  EEAAV 70
           +  A+
Sbjct: 382 DLIAI 386


>gi|260902551|ref|ZP_05910946.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037]
 gi|308109731|gb|EFO47271.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037]
          Length = 773

 Score = 35.7 bits (82), Expect = 2.3,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 9/65 (13%)

Query: 8   IGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           +G+DPGLR TG    IVD  G     +++ TI     Q    +  Q+   +  +++ +  
Sbjct: 329 LGLDPGLR-TGSKIAIVDPTG---KVLATETIYPHPPQKQYDKSAQI---VDQLVRKYNV 381

Query: 66  EEAAV 70
           +  A+
Sbjct: 382 DLIAI 386


>gi|28896924|ref|NP_796529.1| hypothetical protein VP0150 [Vibrio parahaemolyticus RIMD 2210633]
 gi|260365889|ref|ZP_05778383.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030]
 gi|260877824|ref|ZP_05890179.1| protein YhgF [Vibrio parahaemolyticus AN-5034]
 gi|260895527|ref|ZP_05904023.1| protein YhgF [Vibrio parahaemolyticus Peru-466]
 gi|28805132|dbj|BAC58413.1| conserved hypothetical protein [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308088488|gb|EFO38183.1| protein YhgF [Vibrio parahaemolyticus Peru-466]
 gi|308090101|gb|EFO39796.1| protein YhgF [Vibrio parahaemolyticus AN-5034]
 gi|308113482|gb|EFO51022.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030]
          Length = 773

 Score = 35.7 bits (82), Expect = 2.3,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 9/65 (13%)

Query: 8   IGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           +G+DPGLR TG    IVD  G     +++ TI     Q    +  Q+   +  +++ +  
Sbjct: 329 LGLDPGLR-TGSKIAIVDPTG---KVLATETIYPHPPQKQYDKSAQI---VDQLVRKYNV 381

Query: 66  EEAAV 70
           +  A+
Sbjct: 382 DLIAI 386


>gi|281490614|ref|YP_003352594.1| YqgF family resolvase [Lactococcus lactis subsp. lactis KF147]
 gi|161702205|gb|ABX75666.1| Resolvase, YqgF family [Lactococcus lactis subsp. lactis KF147]
          Length = 143

 Score = 35.7 bits (82), Expect = 2.3,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 7/65 (10%)

Query: 6  RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
          RI+G+D G +  G  + D+ G     V      +    S A  L   +E L  +IK ++P
Sbjct: 4  RILGLDVGTKTVGVSVSDLLGMTAQPVE-----TIKIDSEAGELG--FERLGVLIKEYKP 56

Query: 66 EEAAV 70
          E+  +
Sbjct: 57 EKVVL 61


>gi|94989984|ref|YP_598084.1| transcription accessory protein [Streptococcus pyogenes MGAS10270]
 gi|94543492|gb|ABF33540.1| transcription accessory protein [Streptococcus pyogenes MGAS10270]
          Length = 717

 Score = 35.7 bits (82), Expect = 2.3,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 7/66 (10%)

Query: 7   IIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++G DP  R TG    IVD  G     +++  I      S   ++    E LT +I+ ++
Sbjct: 318 VLGFDPAFR-TGAKLAIVDQTG---KLLTTQVIYPVAPAS-QTKIQAAKETLTQLIETYQ 372

Query: 65  PEEAAV 70
            +  A+
Sbjct: 373 IDIIAI 378


>gi|153833924|ref|ZP_01986591.1| protein YhgF [Vibrio harveyi HY01]
 gi|148869762|gb|EDL68739.1| protein YhgF [Vibrio harveyi HY01]
          Length = 773

 Score = 35.7 bits (82), Expect = 2.4,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 9/65 (13%)

Query: 8   IGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           +G+DPGLR TG    IVD  G     +++ TI     Q    +  Q+   +  +++ +  
Sbjct: 329 LGLDPGLR-TGSKIAIVDPTG---KVLATETIYPHPPQKQYDKSAQI---VDQLVRKYNV 381

Query: 66  EEAAV 70
           +  A+
Sbjct: 382 DLIAI 386


>gi|153837872|ref|ZP_01990539.1| protein YhgF [Vibrio parahaemolyticus AQ3810]
 gi|149748735|gb|EDM59580.1| protein YhgF [Vibrio parahaemolyticus AQ3810]
          Length = 773

 Score = 35.7 bits (82), Expect = 2.4,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 9/65 (13%)

Query: 8   IGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           +G+DPGLR TG    IVD  G     +++ TI     Q    +  Q+   +  +++ +  
Sbjct: 329 LGLDPGLR-TGSKIAIVDPTG---KVLATETIYPHPPQKQYDKSAQI---VDQLVRKYNV 381

Query: 66  EEAAV 70
           +  A+
Sbjct: 382 DLIAI 386


>gi|32130063|sp|Q9CJ63|RUVX_LACLA RecName: Full=Putative Holliday junction resolvase
          Length = 143

 Score = 35.7 bits (82), Expect = 2.4,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 7/65 (10%)

Query: 6  RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
          RI+G+D G +  G  + D+ G     V      +    S A  L   +E L  +IK ++P
Sbjct: 4  RILGLDVGTKTVGVSVSDLLGMTAQPVE-----TIKIDSEAGELG--FERLGVLIKEYKP 56

Query: 66 EEAAV 70
          E+  +
Sbjct: 57 EKVVL 61


>gi|229579777|ref|YP_002838176.1| Protein of unknown function DUF1464 [Sulfolobus islandicus
          Y.G.57.14]
 gi|229581555|ref|YP_002839954.1| Protein of unknown function DUF1464 [Sulfolobus islandicus
          Y.N.15.51]
 gi|228010492|gb|ACP46254.1| Protein of unknown function DUF1464 [Sulfolobus islandicus
          Y.G.57.14]
 gi|228012271|gb|ACP48032.1| Protein of unknown function DUF1464 [Sulfolobus islandicus
          Y.N.15.51]
          Length = 302

 Score = 35.7 bits (82), Expect = 2.4,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 10/66 (15%)

Query: 5  IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
          +  IGIDPG     +  VD  G+    V    I +     L  +   +   L  +I ++R
Sbjct: 7  MIYIGIDPGSESYAFAFVDEMGN---LVKYFEIPT----DLVEKNAII---LAKLIADYR 56

Query: 65 PEEAAV 70
          P+  A+
Sbjct: 57 PKAVAL 62


>gi|326405717|gb|ADZ62788.1| YqgF family resolvase [Lactococcus lactis subsp. lactis CV56]
          Length = 143

 Score = 35.7 bits (82), Expect = 2.4,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 7/65 (10%)

Query: 6  RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
          RI+G+D G +  G  + D+ G     V      +    S A  L   +E L  +IK ++P
Sbjct: 4  RILGLDVGTKTVGVSVSDLLGMTAQPVE-----TIKIDSEAGELG--FERLGVLIKEYKP 56

Query: 66 EEAAV 70
          E+  +
Sbjct: 57 EKVVL 61


>gi|254362451|ref|ZP_04978560.1| possible RNA-binding protein [Mannheimia haemolytica PHL213]
 gi|153094040|gb|EDN74956.1| possible RNA-binding protein [Mannheimia haemolytica PHL213]
          Length = 774

 Score = 35.7 bits (82), Expect = 2.4,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 11/65 (16%)

Query: 8   IGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           +G+DPGLR TG    +VD  G     + + TI     +    +L      +  +IK    
Sbjct: 332 MGLDPGLR-TGVKVAVVDNTG---KLLDTATIYPHTGREAEAQL-----AIFSLIKQHNV 382

Query: 66  EEAAV 70
           E  A+
Sbjct: 383 ELIAI 387


>gi|315128002|ref|YP_004070005.1| hypothetical protein PSM_A2941 [Pseudoalteromonas sp. SM9913]
 gi|315016516|gb|ADT69854.1| hypothetical protein PSM_A2941 [Pseudoalteromonas sp. SM9913]
          Length = 774

 Score = 35.7 bits (82), Expect = 2.4,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 11/66 (16%)

Query: 8   IGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFR-LCQLYEGLTDVIKNWR 64
           +G+DPGLR TG    +VD  G     +++ TI     Q+   + L      L  + +  +
Sbjct: 326 LGLDPGLR-TGCKIAVVDSTG---KLLATQTIFPHAPQNHWDKSLRT----LEQLCRQHK 377

Query: 65  PEEAAV 70
            E  A+
Sbjct: 378 VELIAI 383


>gi|261494117|ref|ZP_05990620.1| putative RNA-binding protein [Mannheimia haemolytica serotype A2
           str. BOVINE]
 gi|261496042|ref|ZP_05992452.1| putative RNA-binding protein [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261308292|gb|EEY09585.1| putative RNA-binding protein [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261310283|gb|EEY11483.1| putative RNA-binding protein [Mannheimia haemolytica serotype A2
           str. BOVINE]
          Length = 774

 Score = 35.7 bits (82), Expect = 2.4,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 11/65 (16%)

Query: 8   IGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           +G+DPGLR TG    +VD  G     + + TI     +    +L      +  +IK    
Sbjct: 332 MGLDPGLR-TGVKVAVVDNTG---KLLDTATIYPHTGREAEAQL-----AIFSLIKQHNV 382

Query: 66  EEAAV 70
           E  A+
Sbjct: 383 ELIAI 387


>gi|209554449|ref|YP_002284442.1| protein tex [Ureaplasma urealyticum serovar 10 str. ATCC 33699]
 gi|209541950|gb|ACI60179.1| protein tex [Ureaplasma urealyticum serovar 10 str. ATCC 33699]
          Length = 706

 Score = 35.7 bits (82), Expect = 2.4,   Method: Composition-based stats.
 Identities = 12/65 (18%), Positives = 22/65 (33%), Gaps = 7/65 (10%)

Query: 7   IIGIDPGLRR-TGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           ++G DPG        +VD        + +  I     Q L  +       L  +I  ++ 
Sbjct: 318 VLGFDPGYAHGCKLAVVDKNNQ---LLHTDIIYPHKPQELIEQAK---NTLISLINKYQI 371

Query: 66  EEAAV 70
              A+
Sbjct: 372 NTIAI 376


>gi|195867387|ref|ZP_03079391.1| tex domain/RNA binding domain protein [Ureaplasma urealyticum
           serovar 9 str. ATCC 33175]
 gi|195660863|gb|EDX54116.1| tex domain/RNA binding domain protein [Ureaplasma urealyticum
           serovar 9 str. ATCC 33175]
          Length = 706

 Score = 35.7 bits (82), Expect = 2.4,   Method: Composition-based stats.
 Identities = 12/65 (18%), Positives = 22/65 (33%), Gaps = 7/65 (10%)

Query: 7   IIGIDPGLRR-TGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           ++G DPG        +VD        + +  I     Q L  +       L  +I  ++ 
Sbjct: 318 VLGFDPGYAHGCKLAVVDKNNQ---LLHTDIIYPHKPQELIEQAK---NTLISLINKYQI 371

Query: 66  EEAAV 70
              A+
Sbjct: 372 NTIAI 376


>gi|167975285|ref|ZP_02557562.1| tex domain/RNA binding domain protein [Ureaplasma urealyticum
           serovar 12 str. ATCC 33696]
 gi|168362361|ref|ZP_02695540.1| tex domain/RNA binding domain protein [Ureaplasma urealyticum
           serovar 13 str. ATCC 33698]
 gi|198273504|ref|ZP_03206040.1| tex domain/RNA binding domain protein [Ureaplasma urealyticum
           serovar 4 str. ATCC 27816]
 gi|225550331|ref|ZP_03771280.1| tex domain/RNA binding domain protein [Ureaplasma urealyticum
           serovar 2 str. ATCC 27814]
 gi|171903289|gb|EDT49578.1| tex domain/RNA binding domain protein [Ureaplasma urealyticum
           serovar 13 str. ATCC 33698]
 gi|195659867|gb|EDX53247.1| tex domain/RNA binding domain protein [Ureaplasma urealyticum
           serovar 12 str. ATCC 33696]
 gi|198250024|gb|EDY74804.1| tex domain/RNA binding domain protein [Ureaplasma urealyticum
           serovar 4 str. ATCC 27816]
 gi|225379485|gb|EEH01847.1| tex domain/RNA binding domain protein [Ureaplasma urealyticum
           serovar 2 str. ATCC 27814]
          Length = 706

 Score = 35.7 bits (82), Expect = 2.4,   Method: Composition-based stats.
 Identities = 12/65 (18%), Positives = 22/65 (33%), Gaps = 7/65 (10%)

Query: 7   IIGIDPGLRR-TGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           ++G DPG        +VD        + +  I     Q L  +       L  +I  ++ 
Sbjct: 318 VLGFDPGYAHGCKLAVVDKNNQ---LLHTDIIYPHKPQELIEQAK---NTLISLINKYQI 371

Query: 66  EEAAV 70
              A+
Sbjct: 372 NTIAI 376


>gi|167972296|ref|ZP_02554573.1| tex domain/RNA binding domain protein [Ureaplasma urealyticum
           serovar 5 str. ATCC 27817]
 gi|167974319|ref|ZP_02556596.1| tex domain/RNA binding domain protein [Ureaplasma urealyticum
           serovar 11 str. ATCC 33695]
 gi|167988985|ref|ZP_02570656.1| tex domain/RNA binding domain protein [Ureaplasma urealyticum
           serovar 7 str. ATCC 27819]
 gi|225551556|ref|ZP_03772502.1| tex domain/RNA binding domain protein [Ureaplasma urealyticum
           serovar 8 str. ATCC 27618]
 gi|184209385|gb|EDU06428.1| tex domain/RNA binding domain protein [Ureaplasma urealyticum
           serovar 5 str. ATCC 27817]
 gi|188018673|gb|EDU56713.1| tex domain/RNA binding domain protein [Ureaplasma urealyticum
           serovar 7 str. ATCC 27819]
 gi|188998135|gb|EDU67232.1| tex domain/RNA binding domain protein [Ureaplasma urealyticum
           serovar 11 str. ATCC 33695]
 gi|225379371|gb|EEH01736.1| tex domain/RNA binding domain protein [Ureaplasma urealyticum
           serovar 8 str. ATCC 27618]
          Length = 706

 Score = 35.7 bits (82), Expect = 2.4,   Method: Composition-based stats.
 Identities = 12/65 (18%), Positives = 22/65 (33%), Gaps = 7/65 (10%)

Query: 7   IIGIDPGLRR-TGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           ++G DPG        +VD        + +  I     Q L  +       L  +I  ++ 
Sbjct: 318 VLGFDPGYAHGCKLAVVDKNNQ---LLHTDIIYPHKPQELIEQAK---NTLISLINKYQI 371

Query: 66  EEAAV 70
              A+
Sbjct: 372 NTIAI 376


>gi|261867409|ref|YP_003255331.1| protein YhgF [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|261412741|gb|ACX82112.1| protein YhgF [Aggregatibacter actinomycetemcomitans D11S-1]
          Length = 771

 Score = 35.7 bits (82), Expect = 2.5,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 11/65 (16%)

Query: 8   IGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           +G+DPGLR TG    +VD  G     +++ TI     Q +   +  ++     +IK    
Sbjct: 330 MGLDPGLR-TGVKVAVVDSTG---KLLATDTIYPHTGQ-MDRAMLSIF----QLIKQHNV 380

Query: 66  EEAAV 70
           E  A+
Sbjct: 381 ELIAI 385


>gi|125623030|ref|YP_001031513.1| putative Hollyday junction resolvase [Lactococcus lactis subsp.
          cremoris MG1363]
 gi|167012732|sp|A2RHM2|RUVX_LACLM RecName: Full=Putative Holliday junction resolvase
 gi|124491838|emb|CAL96758.1| putative Hollyday junction resolvase [Lactococcus lactis subsp.
          cremoris MG1363]
 gi|300069777|gb|ADJ59177.1| Holliday junction resolvase-like protein [Lactococcus lactis
          subsp. cremoris NZ9000]
          Length = 143

 Score = 35.7 bits (82), Expect = 2.5,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 7/65 (10%)

Query: 6  RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
          RI+G+D G +  G  + D+ G     V      +    S A  L   ++ L  +IK ++P
Sbjct: 4  RILGLDVGTKTVGVSVSDLLGMTAQPVE-----TIKIDSEAGELG--FDRLAVLIKEYKP 56

Query: 66 EEAAV 70
          E+  +
Sbjct: 57 EKVVL 61


>gi|218439457|ref|YP_002377786.1| glycosyl transferase group 1 [Cyanothece sp. PCC 7424]
 gi|218172185|gb|ACK70918.1| glycosyl transferase group 1 [Cyanothece sp. PCC 7424]
          Length = 414

 Score = 35.7 bits (82), Expect = 2.5,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 16/34 (47%)

Query: 51  QLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLK 84
           Q+ + L  V++ ++P+    E VFV        K
Sbjct: 94  QIAQELDRVLREFKPDLVICEMVFVYPYLKVVQK 127


>gi|116626034|ref|YP_828190.1| RNA-binding S1 domain-containing protein [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116229196|gb|ABJ87905.1| RNA binding S1 domain protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 749

 Score = 35.7 bits (82), Expect = 2.5,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 29/70 (41%), Gaps = 13/70 (18%)

Query: 5   IRIIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVS--CVRQSLAFRLCQLYEGLTDVI 60
           + ++ +DPG+R TG    +VD  G    F+ +  I        +   R     + L  +I
Sbjct: 317 MTVLALDPGIR-TGCKIAVVDDTG---KFLENSVIYPFEPKNDTAGSR-----KTLASLI 367

Query: 61  KNWRPEEAAV 70
             +  +  A+
Sbjct: 368 ARYNVQAIAI 377


>gi|332878326|ref|ZP_08446052.1| RNAse H domain protein, YqgF family [Capnocytophaga sp. oral
          taxon 329 str. F0087]
 gi|332683777|gb|EGJ56648.1| RNAse H domain protein, YqgF family [Capnocytophaga sp. oral
          taxon 329 str. F0087]
          Length = 136

 Score = 35.3 bits (81), Expect = 2.6,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 6/43 (13%)

Query: 5  IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSG--TIVSCVRQSL 45
          +RI+ ID G +RTG  + D     L  ++SG  T+ +      
Sbjct: 1  MRILSIDYGTKRTGLAVTD----PLKLIASGLTTVDTPQLLPF 39


>gi|145300942|ref|YP_001143783.1| hypothetical protein ASA_4094 [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142853714|gb|ABO92035.1| Protein yhgF [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 768

 Score = 35.3 bits (81), Expect = 2.6,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 14/73 (19%)

Query: 1   MRKSIRIIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVS-CVRQSLAFRLCQLYEGLT 57
           MR ++   G+DPG+R TG    +VD  G     V   TI     ++ +   L      L+
Sbjct: 322 MRCTM---GLDPGIR-TGVKVAVVDATG---KLVDHATIYPFEPKKQVDQSLKT----LS 370

Query: 58  DVIKNWRPEEAAV 70
           ++ +  + E  ++
Sbjct: 371 ELCQKHKVELISI 383


>gi|33413567|gb|AAN05716.1| putative Holiday junction resolvase [Lactococcus phage 5447]
 gi|33413572|gb|AAN05720.1| putative Holiday junction resolvase [Lactococcus phage 5469]
          Length = 85

 Score = 35.3 bits (81), Expect = 2.6,   Method: Composition-based stats.
 Identities = 14/88 (15%), Positives = 34/88 (38%), Gaps = 13/88 (14%)

Query: 6  RIIGIDPGLRR-----TGWGIVDVAGDNLCFVSSGTIVS-CVRQSLAFRLCQLYEGLTDV 59
          +I+ ID          TG+      G     +  G+I +   +++   R   +   + D+
Sbjct: 3  KILAIDFSTASKKDEGTGYAF-RKDGQ----LFVGSIKAYNAKKNAWERTFDIVNAIKDI 57

Query: 60 IKNW--RPEEAAVEQVFVNKDAVATLKL 85
          I  +  +    A+E   + ++   ++ L
Sbjct: 58 IDEFDLKDYHMAIETPIMGRNRKHSITL 85


>gi|265763135|ref|ZP_06091703.1| YdcI [Bacteroides sp. 2_1_16]
 gi|263255743|gb|EEZ27089.1| YdcI [Bacteroides sp. 2_1_16]
          Length = 222

 Score = 35.3 bits (81), Expect = 2.6,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 17/71 (23%)

Query: 6  RIIGIDPGLRRTGWGIV--DVAGDNLCFVSSGTIVS----CVRQSLAFRLCQLYEGLTDV 59
          R++GIDPG R TG  +V  D  G+    + +  I        +   A +L ++       
Sbjct: 34 RVMGIDPGFR-TGCKVVCLDAQGN---LLHNENIYPHPPVDKKTEAASKLRKM------- 82

Query: 60 IKNWRPEEAAV 70
          I+ ++ E  A+
Sbjct: 83 IEAYKIEAIAI 93


>gi|312127726|ref|YP_003992600.1| holliday junction resolvase yqgf [Caldicellulosiruptor
          hydrothermalis 108]
 gi|311777745|gb|ADQ07231.1| Holliday junction resolvase YqgF [Caldicellulosiruptor
          hydrothermalis 108]
          Length = 138

 Score = 35.3 bits (81), Expect = 2.6,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 10/66 (15%)

Query: 5  IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
          +RI+ +D G  R G  I     D L       I +    ++  R   L+E L  + + + 
Sbjct: 1  MRILCLDMGNSRVGVAI----SDPLK------ITAQPVMTIELRNKDLFEELDKIFQRYS 50

Query: 65 PEEAAV 70
           E+  +
Sbjct: 51 IEKVVI 56


>gi|148264302|ref|YP_001231008.1| RNA-binding S1 domain-containing protein [Geobacter uraniireducens
           Rf4]
 gi|146397802|gb|ABQ26435.1| RNA binding S1 domain protein [Geobacter uraniireducens Rf4]
          Length = 757

 Score = 35.3 bits (81), Expect = 2.6,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 31/70 (44%), Gaps = 15/70 (21%)

Query: 6   RIIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQS---LAFRLCQLYEGLTDVI 60
           R++GIDPGLR TG     VD  G    F+S  TI      S    A R       L  +I
Sbjct: 325 RVLGIDPGLR-TGSKLAAVDETG---RFLSHCTIYPHTGSSNVEPAKR------ELLRII 374

Query: 61  KNWRPEEAAV 70
            + R E  AV
Sbjct: 375 DSNRCEIIAV 384


>gi|238783100|ref|ZP_04627126.1| hypothetical protein yberc0001_1830 [Yersinia bercovieri ATCC
           43970]
 gi|238715896|gb|EEQ07882.1| hypothetical protein yberc0001_1830 [Yersinia bercovieri ATCC
           43970]
          Length = 788

 Score = 35.3 bits (81), Expect = 2.6,   Method: Composition-based stats.
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 9/45 (20%)

Query: 1   MRKSIRIIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQ 43
           MR ++   G+DPGLR TG    +VD  G     V+  TI     Q
Sbjct: 325 MRATM---GLDPGLR-TGVKVAVVDATG---KLVAYDTIYPHTGQ 362


>gi|210620543|ref|ZP_03292091.1| hypothetical protein CLOHIR_00034 [Clostridium hiranonis DSM 13275]
 gi|210155257|gb|EEA86263.1| hypothetical protein CLOHIR_00034 [Clostridium hiranonis DSM 13275]
          Length = 712

 Score = 35.3 bits (81), Expect = 2.6,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 15/69 (21%)

Query: 7   IIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIV---SCVRQSLAFRLCQLYEGLTDVIK 61
           ++G DPG+R TG    +VD  G    F+ S  +    S  ++S A +       L  +IK
Sbjct: 314 VMGFDPGIR-TGCKIAVVDRNG---KFLDSAVVFVTGSQAKKSEAEK------ELIGLIK 363

Query: 62  NWRPEEAAV 70
               +  A+
Sbjct: 364 KHNIDIIAI 372


>gi|117621065|ref|YP_854833.1| S1 RNA-binding domain-containing protein [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|117562472|gb|ABK39420.1| S1 RNA binding domain protein [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 834

 Score = 35.3 bits (81), Expect = 2.6,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 14/73 (19%)

Query: 1   MRKSIRIIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVS-CVRQSLAFRLCQLYEGLT 57
           MR ++   G+DPG+R TG    +VD  G     V   TI     ++ +   L      L+
Sbjct: 388 MRCTM---GLDPGIR-TGVKVAVVDATG---KLVDHATIYPFEPKRQVDQSLKT----LS 436

Query: 58  DVIKNWRPEEAAV 70
           ++ +  R E  ++
Sbjct: 437 ELCQKHRVELISI 449


>gi|83309458|ref|YP_419722.1| hypothetical protein amb0359 [Magnetospirillum magneticum AMB-1]
 gi|82944299|dbj|BAE49163.1| hypothetical protein [Magnetospirillum magneticum AMB-1]
          Length = 170

 Score = 35.3 bits (81), Expect = 2.6,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 2/55 (3%)

Query: 96  PALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESFFKGKDAADALAI 150
             L  IP       TIK+   G G+  K  +   +K        +  + ADALAI
Sbjct: 106 CELNHIPYQGVPVGTIKRHATGKGNAGKDAVIAAMKA--RGFNPEDDNEADALAI 158


>gi|290473267|ref|YP_003466133.1| protein yhgF [Xenorhabdus bovienii SS-2004]
 gi|289172566|emb|CBJ79335.1| Protein yhgF [Xenorhabdus bovienii SS-2004]
          Length = 780

 Score = 35.3 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 45/121 (37%), Gaps = 25/121 (20%)

Query: 1   MRKSIRIIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTD 58
           MR ++   G+DPGLR TG    +VD  G     +++ T+     Q       +    +  
Sbjct: 325 MRATM---GLDPGLR-TGVKVAVVDSTG---KLIATDTVYPHTGQE-----VKAAAAVAA 372

Query: 59  VIKNWRPEEAAV---------EQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPN 109
           +   ++ E  A+         E+ F   +        +A+A+ +     +    SE A  
Sbjct: 373 LCTKYQVELVAIGNGTASRETERFFA--NIQKQYPDVKAQAVIVSEAGASVYSASELAAL 430

Query: 110 T 110
            
Sbjct: 431 E 431


>gi|332533241|ref|ZP_08409108.1| transcription accessory protein [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332037320|gb|EGI73775.1| transcription accessory protein [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 797

 Score = 35.3 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 9/65 (13%)

Query: 8   IGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           +G+DPGLR TG    +VD  G     +++ TI     Q+   +       L  + +  + 
Sbjct: 326 LGLDPGLR-TGCKIAVVDSTG---KLLATQTIFPHAPQNHWDKSV---RTLEQLCRQHKV 378

Query: 66  EEAAV 70
           E  A+
Sbjct: 379 ELIAI 383


>gi|261211279|ref|ZP_05925568.1| transcription accessory protein [Vibrio sp. RC341]
 gi|260839780|gb|EEX66391.1| transcription accessory protein [Vibrio sp. RC341]
          Length = 773

 Score = 35.3 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 9/65 (13%)

Query: 8   IGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           +G+DPGLR TG    +VD  G     +++ TI     Q    R  Q    +  ++K +  
Sbjct: 329 LGLDPGLR-TGCKVAVVDATG---KVLATDTIYPHAPQHQYDRAMQ---SIALLVKKFNV 381

Query: 66  EEAAV 70
           +  A+
Sbjct: 382 DLIAI 386


>gi|258624644|ref|ZP_05719580.1| RNA-binding protein [Vibrio mimicus VM603]
 gi|258583108|gb|EEW07921.1| RNA-binding protein [Vibrio mimicus VM603]
          Length = 773

 Score = 35.3 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 9/65 (13%)

Query: 8   IGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           +G+DPGLR TG    +VD  G     +++ TI     Q    R  Q    +  ++K +  
Sbjct: 329 LGLDPGLR-TGCKVAVVDATG---KVLATDTIYPHAPQHQYDRAMQ---SIALLVKKFNV 381

Query: 66  EEAAV 70
           +  A+
Sbjct: 382 DLIAI 386


>gi|294495574|ref|YP_003542067.1| cobalamin synthesis protein P47K [Methanohalophilus mahii DSM
          5219]
 gi|292666573|gb|ADE36422.1| cobalamin synthesis protein P47K [Methanohalophilus mahii DSM
          5219]
          Length = 352

 Score = 35.3 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 12/64 (18%), Positives = 26/64 (40%), Gaps = 14/64 (21%)

Query: 8  IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEE 67
          IG+D G        +D+ G     +++G I   ++  +          L  + + +RP+ 
Sbjct: 42 IGVD-GTT------LDIEGVETREITNGCICCTLKIDMEQ-------ALDSLAEEYRPDT 87

Query: 68 AAVE 71
            +E
Sbjct: 88 VIIE 91


>gi|262170352|ref|ZP_06038030.1| transcription accessory protein [Vibrio mimicus MB-451]
 gi|261891428|gb|EEY37414.1| transcription accessory protein [Vibrio mimicus MB-451]
          Length = 773

 Score = 35.3 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 9/65 (13%)

Query: 8   IGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           +G+DPGLR TG    +VD  G     +++ TI     Q    R  Q    +  ++K +  
Sbjct: 329 LGLDPGLR-TGCKVAVVDATG---KVLATDTIYPHAPQHQYDRAMQ---SIALLVKKFNV 381

Query: 66  EEAAV 70
           +  A+
Sbjct: 382 DLIAI 386


>gi|260770787|ref|ZP_05879716.1| transcription accessory protein [Vibrio furnissii CIP 102972]
 gi|260614024|gb|EEX39214.1| transcription accessory protein [Vibrio furnissii CIP 102972]
          Length = 769

 Score = 35.3 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 9/65 (13%)

Query: 8   IGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           +G+DPGLR TG    +VD  G     +++ TI      +   R       +  ++K +  
Sbjct: 329 LGLDPGLR-TGCKVAVVDATG---KVLATDTIYPHQPHNQYDRAMA---SVAALVKQYHV 381

Query: 66  EEAAV 70
           +  A+
Sbjct: 382 DLIAI 386


>gi|229521790|ref|ZP_04411208.1| transcription accessory protein [Vibrio cholerae TM 11079-80]
 gi|229341384|gb|EEO06388.1| transcription accessory protein [Vibrio cholerae TM 11079-80]
          Length = 773

 Score = 35.3 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 9/65 (13%)

Query: 8   IGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           +G+DPGLR TG    +VD  G     +++ TI     Q    R  Q    +  ++K +  
Sbjct: 329 LGLDPGLR-TGCKVAVVDATG---KVLATDTIYPHAPQHQYDRAMQ---SIALLVKKFNV 381

Query: 66  EEAAV 70
           +  A+
Sbjct: 382 DLIAI 386


>gi|149175515|ref|ZP_01854136.1| ribosomal protein S1-like RNA-binding domain [Planctomyces maris
           DSM 8797]
 gi|148845783|gb|EDL60125.1| ribosomal protein S1-like RNA-binding domain [Planctomyces maris
           DSM 8797]
          Length = 828

 Score = 35.3 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 17/71 (23%)

Query: 6   RIIGIDPGLRRTG--WGIVDVAG----DNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDV 59
           RI+ IDPGLR TG    ++D  G     +L +V          +    R     + L +V
Sbjct: 333 RILAIDPGLR-TGCKLAVLDELGYCVATDLVYV-----TGSADKKEFAR-----KKLAEV 381

Query: 60  IKNWRPEEAAV 70
           +   + +  A+
Sbjct: 382 MTEHQCQLVAI 392


>gi|229516964|ref|ZP_04406410.1| transcription accessory protein [Vibrio cholerae RC9]
 gi|229346027|gb|EEO10999.1| transcription accessory protein [Vibrio cholerae RC9]
          Length = 773

 Score = 35.3 bits (81), Expect = 2.8,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 9/65 (13%)

Query: 8   IGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           +G+DPGLR TG    +VD  G     +++ TI     Q    R  Q    +  ++K +  
Sbjct: 329 LGLDPGLR-TGCKVAVVDATG---KVLATDTIYPHAPQHQYDRAMQ---SIALLVKKFNV 381

Query: 66  EEAAV 70
           +  A+
Sbjct: 382 DLIAI 386


>gi|262283641|ref|ZP_06061406.1| conserved hypothetical protein [Streptococcus sp. 2_1_36FAA]
 gi|262260698|gb|EEY79399.1| conserved hypothetical protein [Streptococcus sp. 2_1_36FAA]
          Length = 139

 Score = 35.3 bits (81), Expect = 2.8,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 42/102 (41%), Gaps = 9/102 (8%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+G+D G +  G  I D  G     +    I     Q         +E L +++  ++
Sbjct: 1   MRIMGLDVGSKTVGVAISDPLGFTAQGLE--IIQINEDQEEFG-----FERLGELVAEYK 53

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEY 106
            ++  +  +  N +  +  ++  +RA       L  +PV EY
Sbjct: 54  VDKFVI-GLPKNMNNTSGPRVEASRAYGAKVTELFGLPV-EY 93


>gi|262166725|ref|ZP_06034462.1| transcription accessory protein [Vibrio mimicus VM223]
 gi|262026441|gb|EEY45109.1| transcription accessory protein [Vibrio mimicus VM223]
          Length = 773

 Score = 35.3 bits (81), Expect = 2.8,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 9/65 (13%)

Query: 8   IGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           +G+DPGLR TG    +VD  G     +++ TI     Q    R  Q    +  ++K +  
Sbjct: 329 LGLDPGLR-TGCKVAVVDATG---KVLATDTIYPHAPQHQYDRAMQ---SIALLVKKFNV 381

Query: 66  EEAAV 70
           +  A+
Sbjct: 382 DLIAI 386


>gi|258620410|ref|ZP_05715448.1| conserved hypothetical protein [Vibrio mimicus VM573]
 gi|258587289|gb|EEW12000.1| conserved hypothetical protein [Vibrio mimicus VM573]
          Length = 773

 Score = 35.3 bits (81), Expect = 2.8,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 9/65 (13%)

Query: 8   IGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           +G+DPGLR TG    +VD  G     +++ TI     Q    R  Q    +  ++K +  
Sbjct: 329 LGLDPGLR-TGCKVAVVDATG---KVLATDTIYPHAPQHQYDRAMQ---SIALLVKKFNV 381

Query: 66  EEAAV 70
           +  A+
Sbjct: 382 DLIAI 386


>gi|153854408|ref|ZP_01995686.1| hypothetical protein DORLON_01681 [Dorea longicatena DSM 13814]
 gi|149752934|gb|EDM62865.1| hypothetical protein DORLON_01681 [Dorea longicatena DSM 13814]
          Length = 146

 Score = 35.3 bits (81), Expect = 2.8,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 30/61 (49%), Gaps = 6/61 (9%)

Query: 4  SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
          ++RI+G+D G +  G  + D  G     +++  + +  R+    +L +    +  +I+ +
Sbjct: 2  TMRIMGLDYGSKTVGVAVSDPLG-----ITAQGVETICRKD-ENKLRKTCARIEALIEEY 55

Query: 64 R 64
          +
Sbjct: 56 Q 56


>gi|262402002|ref|ZP_06078567.1| transcription accessory protein [Vibrio sp. RC586]
 gi|262351974|gb|EEZ01105.1| transcription accessory protein [Vibrio sp. RC586]
          Length = 773

 Score = 35.3 bits (81), Expect = 2.8,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 9/65 (13%)

Query: 8   IGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           +G+DPGLR TG    +VD  G     +++ TI     Q    R  Q    +  ++K +  
Sbjct: 329 LGLDPGLR-TGCKVAVVDATG---KVLATDTIYPHAPQHQYDRAMQ---SIALLVKKFNV 381

Query: 66  EEAAV 70
           +  A+
Sbjct: 382 DLIAI 386


>gi|330827877|ref|YP_004390829.1| paral putative RNase R [Aeromonas veronii B565]
 gi|328803013|gb|AEB48212.1| Paral putative RNase R [Aeromonas veronii B565]
          Length = 785

 Score = 35.3 bits (81), Expect = 2.8,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 14/73 (19%)

Query: 1   MRKSIRIIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVS-CVRQSLAFRLCQLYEGLT 57
           MR ++   G+DPG+R TG    +VD  G     V   TI     ++ +   L      L+
Sbjct: 337 MRCTM---GLDPGIR-TGVKVAVVDATG---KLVDHATIYPFEPKRQIDQSLKT----LS 385

Query: 58  DVIKNWRPEEAAV 70
           ++ +  + E  ++
Sbjct: 386 ELCQKHKVELISI 398


>gi|153828359|ref|ZP_01981026.1| conserved hypothetical protein [Vibrio cholerae 623-39]
 gi|148876189|gb|EDL74324.1| conserved hypothetical protein [Vibrio cholerae 623-39]
          Length = 773

 Score = 35.3 bits (81), Expect = 2.8,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 9/65 (13%)

Query: 8   IGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           +G+DPGLR TG    +VD  G     +++ TI     Q    R  Q    +  ++K +  
Sbjct: 329 LGLDPGLR-TGCKVAVVDATG---KVLATDTIYPHAPQHQYDRAMQ---SIALLVKKFNV 381

Query: 66  EEAAV 70
           +  A+
Sbjct: 382 DLIAI 386


>gi|153802184|ref|ZP_01956770.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
 gi|254285911|ref|ZP_04960873.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
 gi|262190725|ref|ZP_06048955.1| transcription accessory protein [Vibrio cholerae CT 5369-93]
 gi|124122258|gb|EAY41001.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
 gi|150424093|gb|EDN16032.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
 gi|262033402|gb|EEY51910.1| transcription accessory protein [Vibrio cholerae CT 5369-93]
          Length = 773

 Score = 35.3 bits (81), Expect = 2.8,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 9/65 (13%)

Query: 8   IGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           +G+DPGLR TG    +VD  G     +++ TI     Q    R  Q    +  ++K +  
Sbjct: 329 LGLDPGLR-TGCKVAVVDATG---KVLATDTIYPHAPQHQYDRAMQ---SIALLVKKFNV 381

Query: 66  EEAAV 70
           +  A+
Sbjct: 382 DLIAI 386


>gi|153212528|ref|ZP_01948275.1| conserved hypothetical protein [Vibrio cholerae 1587]
 gi|124116399|gb|EAY35219.1| conserved hypothetical protein [Vibrio cholerae 1587]
          Length = 773

 Score = 35.3 bits (81), Expect = 2.8,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 9/65 (13%)

Query: 8   IGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           +G+DPGLR TG    +VD  G     +++ TI     Q    R  Q    +  ++K +  
Sbjct: 329 LGLDPGLR-TGCKVAVVDATG---KVLATDTIYPHAPQHQYDRAMQ---SIALLVKKFNV 381

Query: 66  EEAAV 70
           +  A+
Sbjct: 382 DLIAI 386


>gi|15642710|ref|NP_232343.1| hypothetical protein VC2716 [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121726718|ref|ZP_01679943.1| conserved hypothetical protein [Vibrio cholerae V52]
 gi|147674924|ref|YP_001218204.1| hypothetical protein VC0395_A2288 [Vibrio cholerae O395]
 gi|153817458|ref|ZP_01970125.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
 gi|153821294|ref|ZP_01973961.1| conserved hypothetical protein [Vibrio cholerae B33]
 gi|227082830|ref|YP_002811381.1| hypothetical protein VCM66_2636 [Vibrio cholerae M66-2]
 gi|229507236|ref|ZP_04396741.1| transcription accessory protein [Vibrio cholerae BX 330286]
 gi|229509843|ref|ZP_04399324.1| transcription accessory protein [Vibrio cholerae B33]
 gi|229606742|ref|YP_002877390.1| transcription accessory protein [Vibrio cholerae MJ-1236]
 gi|254851253|ref|ZP_05240603.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|255744326|ref|ZP_05418278.1| transcription accessory protein [Vibrio cholera CIRS 101]
 gi|262158564|ref|ZP_06029679.1| transcription accessory protein [Vibrio cholerae INDRE 91/1]
 gi|262170042|ref|ZP_06037731.1| transcription accessory protein [Vibrio cholerae RC27]
 gi|298500469|ref|ZP_07010273.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
 gi|9657313|gb|AAF95856.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121630879|gb|EAX63261.1| conserved hypothetical protein [Vibrio cholerae V52]
 gi|126512044|gb|EAZ74638.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
 gi|126521226|gb|EAZ78449.1| conserved hypothetical protein [Vibrio cholerae B33]
 gi|146316807|gb|ABQ21346.1| conserved hypothetical protein [Vibrio cholerae O395]
 gi|227010718|gb|ACP06930.1| conserved hypothetical protein [Vibrio cholerae M66-2]
 gi|227014602|gb|ACP10812.1| conserved hypothetical protein [Vibrio cholerae O395]
 gi|229353317|gb|EEO18256.1| transcription accessory protein [Vibrio cholerae B33]
 gi|229354741|gb|EEO19662.1| transcription accessory protein [Vibrio cholerae BX 330286]
 gi|229369397|gb|ACQ59820.1| transcription accessory protein [Vibrio cholerae MJ-1236]
 gi|254846958|gb|EET25372.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|255737851|gb|EET93244.1| transcription accessory protein [Vibrio cholera CIRS 101]
 gi|262021450|gb|EEY40162.1| transcription accessory protein [Vibrio cholerae RC27]
 gi|262029725|gb|EEY48374.1| transcription accessory protein [Vibrio cholerae INDRE 91/1]
 gi|297540638|gb|EFH76695.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
          Length = 773

 Score = 35.3 bits (81), Expect = 2.8,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 9/65 (13%)

Query: 8   IGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           +G+DPGLR TG    +VD  G     +++ TI     Q    R  Q    +  ++K +  
Sbjct: 329 LGLDPGLR-TGCKVAVVDATG---KVLATDTIYPHAPQHQYDRAMQ---SIALLVKKFNV 381

Query: 66  EEAAV 70
           +  A+
Sbjct: 382 DLIAI 386


>gi|327485186|gb|AEA79593.1| Transcription accessory protein (S1 RNA-binding domain) [Vibrio
           cholerae LMA3894-4]
          Length = 773

 Score = 35.3 bits (81), Expect = 2.9,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 9/65 (13%)

Query: 8   IGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           +G+DPGLR TG    +VD  G     +++ TI     Q    R  Q    +  ++K +  
Sbjct: 329 LGLDPGLR-TGCKVAVVDATG---KVLATDTIYPHAPQHQYDRAMQ---SIALLVKKFNV 381

Query: 66  EEAAV 70
           +  A+
Sbjct: 382 DLIAI 386


>gi|261601829|gb|ACX91432.1| Protein of unknown function DUF1464 [Sulfolobus solfataricus
          98/2]
          Length = 296

 Score = 35.3 bits (81), Expect = 2.9,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 10/66 (15%)

Query: 5  IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
          +  +GIDPG     +  VD  G+    +    I +     L  +   ++  L  +I ++R
Sbjct: 1  MIYVGIDPGSETYAFAFVDELGN---LIKYFEICT----DLVEK-SSIF--LAKLIADYR 50

Query: 65 PEEAAV 70
          P   A+
Sbjct: 51 PMAVAL 56


>gi|121586614|ref|ZP_01676399.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
 gi|121549173|gb|EAX59206.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
          Length = 773

 Score = 35.3 bits (81), Expect = 2.9,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 9/65 (13%)

Query: 8   IGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           +G+DPGLR TG    +VD  G     +++ TI     Q    R  Q    +  ++K +  
Sbjct: 329 LGLDPGLR-TGCKVAVVDATG---KVLATDTIYPHAPQHQYDRAMQ---SIALLVKKFNV 381

Query: 66  EEAAV 70
           +  A+
Sbjct: 382 DLIAI 386


>gi|15897162|ref|NP_341767.1| hypothetical protein SSO0214 [Sulfolobus solfataricus P2]
 gi|284174408|ref|ZP_06388377.1| hypothetical protein Ssol98_07087 [Sulfolobus solfataricus 98/2]
 gi|13813349|gb|AAK40557.1| Conserved hypothetical protein [Sulfolobus solfataricus P2]
          Length = 302

 Score = 35.3 bits (81), Expect = 2.9,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 10/66 (15%)

Query: 5  IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
          +  +GIDPG     +  VD  G+    +    I +     L  +   ++  L  +I ++R
Sbjct: 7  MIYVGIDPGSETYAFAFVDELGN---LIKYFEICT----DLVEK-SSIF--LAKLIADYR 56

Query: 65 PEEAAV 70
          P   A+
Sbjct: 57 PMAVAL 62


>gi|89098344|ref|ZP_01171228.1| UDP-N-acetylglucosamine 2-epimerase [Bacillus sp. NRRL B-14911]
 gi|89086893|gb|EAR66010.1| UDP-N-acetylglucosamine 2-epimerase [Bacillus sp. NRRL B-14911]
          Length = 372

 Score = 35.3 bits (81), Expect = 2.9,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 24/69 (34%), Gaps = 15/69 (21%)

Query: 36  TIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLG-QARAIAIL 94
            I+   + SL  +L  ++ GL  +I   RP+                L LG     +  +
Sbjct: 67  VILLDKQHSLGEQLSAIFSGLEKLILAERPDRV--------------LVLGDTNSGLGAI 112

Query: 95  SPALARIPV 103
                 +PV
Sbjct: 113 IAERMGVPV 121


>gi|254225439|ref|ZP_04919050.1| conserved hypothetical protein [Vibrio cholerae V51]
 gi|125622073|gb|EAZ50396.1| conserved hypothetical protein [Vibrio cholerae V51]
          Length = 773

 Score = 35.3 bits (81), Expect = 2.9,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 9/65 (13%)

Query: 8   IGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           +G+DPGLR TG    +VD  G     +++ TI     Q    R  Q    +  ++K +  
Sbjct: 329 LGLDPGLR-TGCKVAVVDATG---KVLATDTIYPHAPQHQYDRAMQ---SIALLVKKFNV 381

Query: 66  EEAAV 70
           +  A+
Sbjct: 382 DLIAI 386


>gi|229513644|ref|ZP_04403108.1| transcription accessory protein [Vibrio cholerae TMA 21]
 gi|229349521|gb|EEO14477.1| transcription accessory protein [Vibrio cholerae TMA 21]
          Length = 773

 Score = 35.3 bits (81), Expect = 2.9,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 9/65 (13%)

Query: 8   IGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           +G+DPGLR TG    +VD  G     +++ TI     Q    R  Q    +  ++K +  
Sbjct: 329 LGLDPGLR-TGCKVAVVDATG---KVLATDTIYPHAPQHQYDRAMQ---SIALLVKKFNV 381

Query: 66  EEAAV 70
           +  A+
Sbjct: 382 DLIAI 386


>gi|297581556|ref|ZP_06943479.1| conserved hypothetical protein [Vibrio cholerae RC385]
 gi|297534394|gb|EFH73232.1| conserved hypothetical protein [Vibrio cholerae RC385]
          Length = 773

 Score = 35.3 bits (81), Expect = 2.9,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 9/65 (13%)

Query: 8   IGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           +G+DPGLR TG    +VD  G     +++ TI     Q    R  Q    +  ++K +  
Sbjct: 329 LGLDPGLR-TGCKVAVVDATG---KVLATDTIYPHAPQHQYDRAMQ---SIALLVKKFNV 381

Query: 66  EEAAV 70
           +  A+
Sbjct: 382 DLIAI 386


>gi|153825500|ref|ZP_01978167.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
 gi|149740785|gb|EDM54876.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
          Length = 773

 Score = 35.3 bits (81), Expect = 2.9,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 9/65 (13%)

Query: 8   IGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           +G+DPGLR TG    +VD  G     +++ TI     Q    R  Q    +  ++K +  
Sbjct: 329 LGLDPGLR-TGCKVAVVDATG---KVLATDTIYPHAPQHQYDRAMQ---SIALLVKKFNV 381

Query: 66  EEAAV 70
           +  A+
Sbjct: 382 DLIAI 386


>gi|229524694|ref|ZP_04414099.1| transcription accessory protein [Vibrio cholerae bv. albensis
           VL426]
 gi|229338275|gb|EEO03292.1| transcription accessory protein [Vibrio cholerae bv. albensis
           VL426]
          Length = 773

 Score = 35.3 bits (81), Expect = 2.9,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 9/65 (13%)

Query: 8   IGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           +G+DPGLR TG    +VD  G     +++ TI     Q    R  Q    +  ++K +  
Sbjct: 329 LGLDPGLR-TGCKVAVVDATG---KVLATDTIYPHAPQHQYDRAMQ---SIALLVKKFNV 381

Query: 66  EEAAV 70
           +  A+
Sbjct: 382 DLIAI 386


>gi|291287721|ref|YP_003504537.1| Tex-like protein protein-like protein [Denitrovibrio acetiphilus
           DSM 12809]
 gi|290884881|gb|ADD68581.1| Tex-like protein protein-like protein [Denitrovibrio acetiphilus
           DSM 12809]
          Length = 706

 Score = 35.3 bits (81), Expect = 2.9,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 9/66 (13%)

Query: 7   IIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           I+GIDP  R TG  + +VD  GD    +  G +     Q+   +   +   + + I+   
Sbjct: 312 IMGIDPAFR-TGCKFAVVDTTGD---LLDYGVMYPTKPQADYQKSRSI---MLESIRKNS 364

Query: 65  PEEAAV 70
               A+
Sbjct: 365 VNAIAI 370


>gi|258648111|ref|ZP_05735580.1| CRISPR-associated protein, Csn1 family [Prevotella tannerae ATCC
          51259]
 gi|260851984|gb|EEX71853.1| CRISPR-associated protein, Csn1 family [Prevotella tannerae ATCC
          51259]
          Length = 1234

 Score = 35.3 bits (81), Expect = 3.0,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 1/31 (3%)

Query: 6  RIIGIDPGLRRTGWGIVDV-AGDNLCFVSSG 35
          RI+G+D G    GW +VD    +    +  G
Sbjct: 20 RILGLDTGTNSLGWAVVDRDENNQYTPICRG 50


>gi|261250556|ref|ZP_05943131.1| transcription accessory protein [Vibrio orientalis CIP 102891]
 gi|260939125|gb|EEX95112.1| transcription accessory protein [Vibrio orientalis CIP 102891]
          Length = 773

 Score = 35.3 bits (81), Expect = 3.0,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 9/65 (13%)

Query: 8   IGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           +G+DPGLR TG    +VD  G     +++ TI     Q    +  Q+   +  +++ +  
Sbjct: 329 LGLDPGLR-TGSKIAVVDSTG---KVLTTETIYPHPPQKQYDKSAQI---VDALVRKYNV 381

Query: 66  EEAAV 70
           +  A+
Sbjct: 382 DLIAI 386


>gi|317508584|ref|ZP_07966245.1| alpha amylase [Segniliparus rugosus ATCC BAA-974]
 gi|316253128|gb|EFV12537.1| alpha amylase [Segniliparus rugosus ATCC BAA-974]
          Length = 526

 Score = 35.3 bits (81), Expect = 3.0,   Method: Composition-based stats.
 Identities = 17/108 (15%), Positives = 42/108 (38%), Gaps = 20/108 (18%)

Query: 12  PGL---RRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEA 68
           PGL      G G++D +  +L F            +    + +++  +  V+  + P++ 
Sbjct: 218 PGLPDMTTVGSGLLDHSPGDLRF------------NQPA-VHEIHRRIRAVLDEY-PDKM 263

Query: 69  AVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVI 116
           AV +++   D          R   +      ++  +E+    I++A+ 
Sbjct: 264 AVGEIWARDDKTFA---AYLRPDELHLGFNFKLVEAEFEAKQIREAIT 308


>gi|209693812|ref|YP_002261740.1| putative RNA binding protein [Aliivibrio salmonicida LFI1238]
 gi|208007763|emb|CAQ77882.1| putative RNA binding protein [Aliivibrio salmonicida LFI1238]
          Length = 778

 Score = 35.3 bits (81), Expect = 3.1,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 9/65 (13%)

Query: 8   IGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           +G+DPGLR TG    +VD  G     +++ TI      +   +  Q+   +  +IK    
Sbjct: 326 LGLDPGLR-TGTKVAVVDATG---KVLATDTIYQNQPHNKTAQSAQI---IETLIKRHNV 378

Query: 66  EEAAV 70
           +  A+
Sbjct: 379 DLIAI 383


>gi|205374237|ref|ZP_03227036.1| Holliday junction resolvase-like protein [Bacillus coahuilensis
          m4-4]
          Length = 138

 Score = 35.3 bits (81), Expect = 3.1,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 9/67 (13%)

Query: 5  IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQL-YEGLTDVIKNW 63
          +RI+G+D G R  G  + D  G    + + G I +     +   L  L YE + +++K +
Sbjct: 1  MRIMGLDVGTRTVGVAVSDAFG----WTAQG-IETIK---IHEELGFLGYERIKELVKEY 52

Query: 64 RPEEAAV 70
             +  V
Sbjct: 53 EVSKIVV 59


>gi|158337244|ref|YP_001518419.1| S1 RNA-binding domain-containing protein [Acaryochloris marina
           MBIC11017]
 gi|158307485|gb|ABW29102.1| S1 RNA binding domain protein [Acaryochloris marina MBIC11017]
          Length = 720

 Score = 35.3 bits (81), Expect = 3.2,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 5/63 (7%)

Query: 8   IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEE 67
           +GIDPG R TG  +V +      F+    I     Q++  R  Q  + +  +I+ ++ + 
Sbjct: 323 LGIDPGFR-TGCKVVALD-HTGKFLEYQAIF--PHQAVGQR-DQAAKTVARLIQTYQIDL 377

Query: 68  AAV 70
            A+
Sbjct: 378 IAI 380


>gi|284048258|ref|YP_003398597.1| Holliday junction resolvase YqgF [Acidaminococcus fermentans DSM
          20731]
 gi|283952479|gb|ADB47282.1| Holliday junction resolvase YqgF [Acidaminococcus fermentans DSM
          20731]
          Length = 139

 Score = 35.3 bits (81), Expect = 3.2,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 6/53 (11%)

Query: 5  IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGT--IVSCVRQSLAFRLCQLYEG 55
          +RI+G+D G R  G  + D  G    F++ G   I     ++   RL +L E 
Sbjct: 1  MRIMGLDLGTRTIGVSVSDETG----FIARGVETIRRKGLENDLKRLGELVEQ 49


>gi|194910905|ref|XP_001982249.1| GG12501 [Drosophila erecta]
 gi|190656887|gb|EDV54119.1| GG12501 [Drosophila erecta]
          Length = 990

 Score = 35.3 bits (81), Expect = 3.2,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 11/68 (16%)

Query: 6   RIIGIDPGLRR-TGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEG--LTDVIKN 62
           RI+GIDPG        ++    D    + +G I          R  +      L  ++ +
Sbjct: 524 RILGIDPGYTNGCKLAVISETAD---VLDTGVIY-----PHGARSNKRAAEQKLVQLLSD 575

Query: 63  WRPEEAAV 70
              +  A+
Sbjct: 576 HNCQIIAL 583


>gi|138893885|ref|YP_001124338.1| S1 RNA-binding domain-containing protein [Geobacillus
           thermodenitrificans NG80-2]
 gi|134265398|gb|ABO65593.1| S1 RNA binding domain protein [Geobacillus thermodenitrificans
           NG80-2]
          Length = 721

 Score = 35.3 bits (81), Expect = 3.2,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 9/66 (13%)

Query: 7   IIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++GIDP  R TG    +VD  G  L       I          R  +    L  ++ ++ 
Sbjct: 322 VLGIDPAYR-TGCKLAVVDETGKLLRI---DVIYPH---PPQERKEEARAKLLRLLDDYH 374

Query: 65  PEEAAV 70
            +  A+
Sbjct: 375 VDMIAI 380


>gi|37524230|ref|NP_927574.1| hypothetical protein plu0210 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36783653|emb|CAE12505.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 776

 Score = 35.3 bits (81), Expect = 3.3,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 43/121 (35%), Gaps = 25/121 (20%)

Query: 1   MRKSIRIIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTD 58
           MR ++   G+DPGLR TG    ++D  G     +++ TI     Q+           +  
Sbjct: 325 MRATM---GLDPGLR-TGVKVAVIDATG---KLIATDTIYPHTGQTAKA-----AASVAA 372

Query: 59  VIKNWRPEEAAV---------EQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPN 109
           +    + E  A+         E+ F   D        +A+ + +     +    SE A  
Sbjct: 373 LCLKHQVELVAIGNGTASRETERFFA--DVQTQFPEIKAQKVIVSEAGASVYSASELAAQ 430

Query: 110 T 110
            
Sbjct: 431 E 431


>gi|238916712|ref|YP_002930229.1| putative Holliday junction resolvase [Eubacterium eligens ATCC
           27750]
 gi|259495704|sp|C4Z578|RUVX_EUBE2 RecName: Full=Putative Holliday junction resolvase
 gi|238872072|gb|ACR71782.1| putative Holliday junction resolvase [Eubacterium eligens ATCC
           27750]
          Length = 140

 Score = 34.9 bits (80), Expect = 3.3,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 41/102 (40%), Gaps = 13/102 (12%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RIIG+D G +  G  + D  G     +++    +  R+    +L + Y  +  +I  + 
Sbjct: 1   MRIIGLDVGTKTVGVALSDPLG-----ITAQPFETITRKE-NNKLRRTYARIEQIISEYD 54

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSP---ALARIPV 103
             E  V      K+   T+   +A+A    +        +PV
Sbjct: 55  VTEIVV---GYPKNMDDTIGE-RAKACEEFAAALERRTGLPV 92


>gi|330718286|ref|ZP_08312886.1| membrane carboxypeptidase (penicillin-binding protein) [Leuconostoc
           fallax KCTC 3537]
          Length = 618

 Score = 34.9 bits (80), Expect = 3.4,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 22/73 (30%), Gaps = 14/73 (19%)

Query: 106 YAPNTIKKAVIGVG----------HGDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHA 155
           Y P+ +KK     G             K     ML  +M         AADA    +   
Sbjct: 426 YKPSYVKKITTADGTTHNFNTSGKRAMKSSTAFMLTDMMKGVIKPNASAADA---EITGL 482

Query: 156 YHAN-SGYYKIAS 167
           + A  SG    A 
Sbjct: 483 HQAGKSGLVSYAE 495


>gi|298246428|ref|ZP_06970234.1| HNH endonuclease [Ktedonobacter racemifer DSM 44963]
 gi|297553909|gb|EFH87774.1| HNH endonuclease [Ktedonobacter racemifer DSM 44963]
          Length = 429

 Score = 34.9 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 10/49 (20%)

Query: 10 IDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTD 58
          +DPG R TG  +VD A   + F             LA R   + + L D
Sbjct: 59 LDPGSRTTGIAVVDDANGKIVF----------AAELAHRGHAIKDSLDD 97


>gi|297568097|ref|YP_003689441.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Desulfurivibrio alkaliphilus AHT2]
 gi|296924012|gb|ADH84822.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Desulfurivibrio alkaliphilus AHT2]
          Length = 606

 Score = 34.9 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 52/106 (49%), Gaps = 9/106 (8%)

Query: 22  VDVAGDNLCFVSSGTIVSCVRQSLAF----RLCQLYEGLTDVIKNWRPEEAAVEQVFVNK 77
           ++   + + F+++GT    V+++       +L  +Y     +I+++    A VE+++V +
Sbjct: 231 IEPGDNKIGFIAAGTSYLYVKEAFPEATVLKLGLVYPLPEQLIRDF---AARVEKLYVVE 287

Query: 78  DAVATLKLGQARAIAILSPALARIP-VSEYAPNTIKKAVIGVGHGD 122
           D    L+  + +A+ I       IP + E  P+ +++A+ G    D
Sbjct: 288 DLDPFLET-RIKAMGIACIGKEVIPAIGELTPSVVRRAITGQAPAD 332


>gi|124026983|ref|YP_001012303.1| hypothetical protein Hbut_0082 [Hyperthermus butylicus DSM 5456]
 gi|123977677|gb|ABM79958.1| conserved archaeal protein [Hyperthermus butylicus DSM 5456]
          Length = 715

 Score = 34.9 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)

Query: 2   RKSIRIIGIDPGLRRTGWGIVDVAGD 27
            K   IIGIDPG+  TG  I+D+ G 
Sbjct: 275 PKPYIIIGIDPGIS-TGVAIIDIHGR 299


>gi|237747831|ref|ZP_04578311.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
 gi|229379193|gb|EEO29284.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
          Length = 151

 Score = 34.9 bits (80), Expect = 3.6,   Method: Composition-based stats.
 Identities = 35/157 (22%), Positives = 56/157 (35%), Gaps = 25/157 (15%)

Query: 3   KSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
             + I+ ID G  +TGW   +  G     ++ GT     +++   R    +    +    
Sbjct: 2   NEVNILAIDIG-TKTGWAKYERGGK----ITGGTQHFKPKKT--ERQAIRWARFKEW--- 51

Query: 63  WRPEEAAVEQV----FVNKDAVATLKLGQARA----IAILSPALARIPVSEYAPNTIKKA 114
               + A++ V    F +  A A +    A      I  +      IP        IKK 
Sbjct: 52  ---TQMALDGVHIVYFEDVKAHAGVLAAHAYGGYLAILEMLCVTRNIPCHPVGVGVIKKY 108

Query: 115 VIGVGHGDKKQIHMMLKMLMPESFFKGKDA-ADALAI 150
             G G+ DK+    M+       F    D  ADALA+
Sbjct: 109 WTGKGNADKE---AMINEAKRRGFNIVDDNHADALAL 142


>gi|308810054|ref|XP_003082336.1| transcriptional accessory protein (ISS) [Ostreococcus tauri]
 gi|116060804|emb|CAL57282.1| transcriptional accessory protein (ISS) [Ostreococcus tauri]
          Length = 948

 Score = 34.9 bits (80), Expect = 3.6,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 14/77 (18%)

Query: 1   MRKSIRIIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQL-----Y 53
           MR S  ++G+DP  R TG    +VD  G     + +G +          ++ +       
Sbjct: 519 MRPSRVVLGVDPAYR-TGCKLAVVDATG---ALLDTGVVYLKQ---FESKMLKRGESGAA 571

Query: 54  EGLTDVIKNWRPEEAAV 70
           E L +++  W     A+
Sbjct: 572 ERLREIVDRWSVTAIAI 588


>gi|148257617|ref|YP_001242202.1| peptidase [Bradyrhizobium sp. BTAi1]
 gi|146409790|gb|ABQ38296.1| putative peptidase (S8 and S53, subtilisin, kexin, sedolisin
           family) [Bradyrhizobium sp. BTAi1]
          Length = 952

 Score = 34.9 bits (80), Expect = 3.6,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 32/92 (34%), Gaps = 23/92 (25%)

Query: 75  VNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVG------HGDKKQIHM 128
           V + A  T + GQ +  +     +A +            A  G G         K+ +  
Sbjct: 351 VYRAAATTGRSGQGQGTSFAVALIAGV-------AACWLAHHGRGTIIAEARRRKETVQE 403

Query: 129 MLKMLMPESFFKGK---DA-------ADALAI 150
           M + L+  +  K     D+       ADALA+
Sbjct: 404 MFRRLLRATARKPAPDWDSFNMGVGIADALAL 435


>gi|219870727|ref|YP_002475102.1| transcriptional accessory protein (S1 RNA binding domain)
           [Haemophilus parasuis SH0165]
 gi|219690931|gb|ACL32154.1| transcriptional accessory protein (S1 RNA binding domain)
           [Haemophilus parasuis SH0165]
          Length = 769

 Score = 34.9 bits (80), Expect = 3.6,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 11/65 (16%)

Query: 8   IGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           +G+DPGLR TG    +VD  G     + + TI     Q +   +  +Y     +IK    
Sbjct: 332 MGLDPGLR-TGVKVAVVDNTG---KLLDTATIYPHTGQ-MDVAMVTIY----KLIKQHNV 382

Query: 66  EEAAV 70
           +  A+
Sbjct: 383 DLIAI 387


>gi|167855135|ref|ZP_02477907.1| hypothetical protein HPS_06899 [Haemophilus parasuis 29755]
 gi|167853770|gb|EDS25012.1| hypothetical protein HPS_06899 [Haemophilus parasuis 29755]
          Length = 769

 Score = 34.9 bits (80), Expect = 3.6,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 11/65 (16%)

Query: 8   IGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           +G+DPGLR TG    +VD  G     + + TI     Q +   +  +Y     +IK    
Sbjct: 332 MGLDPGLR-TGVKVAVVDNTG---KLLDTATIYPHTGQ-MDVAMVTIY----KLIKQHNV 382

Query: 66  EEAAV 70
           +  A+
Sbjct: 383 DLIAI 387


>gi|332662761|ref|YP_004445549.1| Type I site-specific deoxyribonuclease [Haliscomenobacter
          hydrossis DSM 1100]
 gi|332331575|gb|AEE48676.1| Type I site-specific deoxyribonuclease [Haliscomenobacter
          hydrossis DSM 1100]
          Length = 790

 Score = 34.9 bits (80), Expect = 3.7,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 5/33 (15%)

Query: 10 IDPGLRRTGWGIVDVAGDNLC---FVSSGTIVS 39
          IDP L+  GWG+V+  G  +     +++G I +
Sbjct: 11 IDPALKACGWGVVE--GSRILREYHITAGKIQT 41


>gi|313680200|ref|YP_004057939.1| butyrate kinase [Oceanithermus profundus DSM 14977]
 gi|313152915|gb|ADR36766.1| butyrate kinase [Oceanithermus profundus DSM 14977]
          Length = 357

 Score = 34.9 bits (80), Expect = 3.7,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 26/64 (40%)

Query: 5  IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
          +R+  I+PG   T   +++V       +    +      SLA  L +  E +    + W 
Sbjct: 6  VRVFAINPGSTSTKLALLEVDASEARLLEEEVVRHAPAPSLAADLERRREQVLTQAQAWA 65

Query: 65 PEEA 68
          P +A
Sbjct: 66 PFDA 69


>gi|220930482|ref|YP_002507391.1| CRISPR-associated protein, Csn1 family [Clostridium
          cellulolyticum H10]
 gi|220000810|gb|ACL77411.1| CRISPR-associated protein, Csn1 family [Clostridium
          cellulolyticum H10]
          Length = 1021

 Score = 34.9 bits (80), Expect = 3.7,   Method: Composition-based stats.
 Identities = 7/29 (24%), Positives = 15/29 (51%), Gaps = 2/29 (6%)

Query: 8  IGIDPGLRRTGWGIVDVAGDNLCFVSSGT 36
          +G+D G+   GW ++D   + +  +  G 
Sbjct: 5  LGLDVGIASVGWAVIDKDNNKI--IDLGV 31


>gi|237740763|ref|ZP_04571244.1| glucokinase [Fusobacterium sp. 2_1_31]
 gi|229422780|gb|EEO37827.1| glucokinase [Fusobacterium sp. 2_1_31]
          Length = 315

 Score = 34.9 bits (80), Expect = 3.8,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 3/53 (5%)

Query: 8  IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
          IGID G   T  G+VD+ G+    + S  I +  +Q +   L +++E   +++
Sbjct: 5  IGIDLGGTNTKIGVVDLEGN---LIISKIIKTHSKQKVDKTLERIWETSKELL 54


>gi|169825145|ref|YP_001692756.1| transcription accessory protein [Finegoldia magna ATCC 29328]
 gi|167831950|dbj|BAG08866.1| transcription accessory protein [Finegoldia magna ATCC 29328]
          Length = 697

 Score = 34.9 bits (80), Expect = 3.9,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 14/76 (18%)

Query: 1   MRKSIR---IIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTI-VSCVRQSLAFRLCQLYE 54
           M+  I+   IIG+DPG R TG    ++   GD   F+ S  I V+  R+    ++ +  E
Sbjct: 307 MQPPIKETAIIGLDPGFR-TGCKVAVISEYGD---FLDSAVIYVTDARK----QIQRADE 358

Query: 55  GLTDVIKNWRPEEAAV 70
            L + IK +  +  A+
Sbjct: 359 TLKEFIKKYNVKLIAI 374


>gi|23013774|ref|ZP_00053634.1| hypothetical protein Magn03008224 [Magnetospirillum magnetotacticum
           MS-1]
          Length = 155

 Score = 34.9 bits (80), Expect = 3.9,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 2/55 (3%)

Query: 96  PALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESFFKGKDAADALAI 150
             L  IP       TIK+   G G+  K  +   ++        +  + ADALAI
Sbjct: 91  CELKHIPYQGVPVGTIKRHATGKGNAGKDAVIAAMRS--RGFNPEDDNEADALAI 143


>gi|331085955|ref|ZP_08335038.1| Holliday junction resolvase [Lachnospiraceae bacterium
          9_1_43BFAA]
 gi|330406878|gb|EGG86383.1| Holliday junction resolvase [Lachnospiraceae bacterium
          9_1_43BFAA]
          Length = 151

 Score = 34.9 bits (80), Expect = 4.0,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 32/66 (48%), Gaps = 6/66 (9%)

Query: 5  IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
          +RI+G+D G +  G  I D  G     +++  I +  R+    +L +    +  +++ ++
Sbjct: 1  MRIMGLDYGSKTVGVAISDPLG-----LTAQGIETICRKE-ENKLRKTLARIEALVQEYQ 54

Query: 65 PEEAAV 70
           EE  +
Sbjct: 55 VEEIVL 60


>gi|302379353|ref|ZP_07267840.1| Tex-like protein N-terminal domain protein [Finegoldia magna
           ACS-171-V-Col3]
 gi|302312698|gb|EFK94692.1| Tex-like protein N-terminal domain protein [Finegoldia magna
           ACS-171-V-Col3]
          Length = 697

 Score = 34.9 bits (80), Expect = 4.0,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 14/76 (18%)

Query: 1   MRKSIR---IIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTI-VSCVRQSLAFRLCQLYE 54
           M+  I+   IIG+DPG R TG    ++   GD   F+ S  I V+  R+    ++ +  E
Sbjct: 307 MQPPIKETAIIGLDPGFR-TGCKVAVISEYGD---FLDSAVIYVTDARK----QIQRADE 358

Query: 55  GLTDVIKNWRPEEAAV 70
            L + IK +  +  A+
Sbjct: 359 TLKEFIKKYNVKLIAI 374


>gi|254787791|ref|YP_003075220.1| transcriptional accessory protein [Teredinibacter turnerae T7901]
 gi|237685533|gb|ACR12797.1| putative transcriptional accessory protein [Teredinibacter turnerae
           T7901]
          Length = 773

 Score = 34.9 bits (80), Expect = 4.0,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 9/65 (13%)

Query: 8   IGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           IG+DPGLR TG    +VD  G     +  G I          R+ +    L  + K    
Sbjct: 329 IGLDPGLR-TGVKVAVVDATGQ---VLDHGAIFP---TPPQNRVMEAEATLVALCKKHNV 381

Query: 66  EEAAV 70
              A+
Sbjct: 382 SLIAI 386


>gi|303233848|ref|ZP_07320501.1| Tex-like protein N-terminal domain protein [Finegoldia magna
           BVS033A4]
 gi|302495043|gb|EFL54796.1| Tex-like protein N-terminal domain protein [Finegoldia magna
           BVS033A4]
          Length = 697

 Score = 34.9 bits (80), Expect = 4.0,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 14/76 (18%)

Query: 1   MRKSIR---IIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTI-VSCVRQSLAFRLCQLYE 54
           M+  I+   IIG+DPG R TG    ++   GD   F+ S  I V+  R+    ++ +  E
Sbjct: 307 MQPPIKETAIIGLDPGFR-TGCKVAVISEYGD---FLDSAVIYVTDARK----QIQRADE 358

Query: 55  GLTDVIKNWRPEEAAV 70
            L + IK +  +  A+
Sbjct: 359 TLKEFIKKYNVKLIAI 374


>gi|196250542|ref|ZP_03149232.1| Resolvase RNase H domain protein fold protein [Geobacillus sp.
           G11MC16]
 gi|196209891|gb|EDY04660.1| Resolvase RNase H domain protein fold protein [Geobacillus sp.
           G11MC16]
          Length = 491

 Score = 34.9 bits (80), Expect = 4.0,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 9/66 (13%)

Query: 7   IIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++GIDP  R TG    +VD  G  L       I          R  +    L  ++ ++ 
Sbjct: 322 VLGIDPAYR-TGCKLAVVDETGKLLR------IDVVYPHPPQERKEEARAKLLRLLDDYH 374

Query: 65  PEEAAV 70
            +  A+
Sbjct: 375 VDMIAI 380


>gi|315634955|ref|ZP_07890236.1| YhgF like protein [Aggregatibacter segnis ATCC 33393]
 gi|315476217|gb|EFU66968.1| YhgF like protein [Aggregatibacter segnis ATCC 33393]
          Length = 771

 Score = 34.9 bits (80), Expect = 4.1,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 11/65 (16%)

Query: 8   IGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           +G+DPGLR TG    +VD  G     +++ TI     Q +   +  ++     +IK    
Sbjct: 330 MGLDPGLR-TGVKVAVVDNTG---KLLATDTIYPHTGQ-MERAMLSIF----QLIKQHNV 380

Query: 66  EEAAV 70
           E  A+
Sbjct: 381 ELIAI 385


>gi|269215120|ref|ZP_06159049.1| CRISPR-associated protein, Csn1 family [Neisseria lactamica ATCC
          23970]
 gi|269208233|gb|EEZ74688.1| CRISPR-associated protein, Csn1 family [Neisseria lactamica ATCC
          23970]
          Length = 666

 Score = 34.9 bits (80), Expect = 4.1,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 24/59 (40%), Gaps = 11/59 (18%)

Query: 2  RKSIR-IIGIDPGLRRTGWGIVDV--AGDNLCFVSSG--------TIVSCVRQSLAFRL 49
             +  I+G+D G+   GW +V+V    + +  +  G           +    ++A RL
Sbjct: 6  PNPMNYILGLDIGIASVGWAMVEVDEEENPIRLIDLGVRVFERAEVPKTGDSLAMARRL 64


>gi|33413556|gb|AAN05707.1| putative Holiday junction resolvase [Lactococcus phage 943]
          Length = 84

 Score = 34.9 bits (80), Expect = 4.2,   Method: Composition-based stats.
 Identities = 13/87 (14%), Positives = 33/87 (37%), Gaps = 13/87 (14%)

Query: 6  RIIGIDPGLRR-----TGWGIVDVAGDNLCFVSSGTIVS-CVRQSLAFRLCQLYEGLTDV 59
          +I+ ID          TG+      G     +  G+I +   +++   R   +   + D+
Sbjct: 3  KILAIDFSTASKKDEGTGYAF-RKDGQ----LYVGSIKAYNAKKNAWERTFDIVNAIKDI 57

Query: 60 IKNW--RPEEAAVEQVFVNKDAVATLK 84
          I  +  +    A+E   + ++   ++ 
Sbjct: 58 IDEFDLKDYHMAIETPIMGRNRKHSIT 84


>gi|55822633|ref|YP_141074.1| transcriptional regulator [Streptococcus thermophilus CNRZ1066]
 gi|55738618|gb|AAV62259.1| transcriptional regulator, putative [Streptococcus thermophilus
           CNRZ1066]
          Length = 710

 Score = 34.9 bits (80), Expect = 4.3,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 7/66 (10%)

Query: 7   IIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++G DP  R TG    +VD  G     +++  I      S A ++ Q  + L D+IK   
Sbjct: 311 VLGFDPAFR-TGAKLAVVDQTG---KLITTQVIYPVAPASQA-KIAQAKKDLADLIKEHA 365

Query: 65  PEEAAV 70
            E  A+
Sbjct: 366 IEIIAI 371


>gi|293390844|ref|ZP_06635178.1| protein YhgF [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|290951378|gb|EFE01497.1| protein YhgF [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 771

 Score = 34.9 bits (80), Expect = 4.3,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 11/65 (16%)

Query: 8   IGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           +G+DPGLR TG    +VD  G     +++ TI     Q +   +  ++     +IK    
Sbjct: 330 MGLDPGLR-TGVKVAVVDNTG---KLLATDTIYPHTGQ-MDRAMLSIF----QLIKQHNV 380

Query: 66  EEAAV 70
           E  A+
Sbjct: 381 ELIAI 385


>gi|225871407|ref|YP_002747354.1| Holliday junction resolvase [Streptococcus equi subsp. equi 4047]
 gi|254767526|sp|C0MAR3|RUVX_STRE4 RecName: Full=Putative Holliday junction resolvase
 gi|225700811|emb|CAW95508.1| putative Holliday junction resolvase [Streptococcus equi subsp.
          equi 4047]
          Length = 139

 Score = 34.9 bits (80), Expect = 4.3,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 9/67 (13%)

Query: 5  IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCV-RQSLAFRLCQLYEGLTDVIKNW 63
          +RI+G+D G +  G  I D  G     +    I     +Q         ++ L +++K +
Sbjct: 1  MRIMGLDVGSKTVGVAISDPLGFTAQGLE--IIRINEDKQDFG------FDRLAELVKQY 52

Query: 64 RPEEAAV 70
          + +   +
Sbjct: 53 QVDRFVI 59


>gi|261418556|ref|YP_003252238.1| transcriptional accessory protein Tex [Geobacillus sp. Y412MC61]
 gi|319765370|ref|YP_004130871.1| Tex-like protein [Geobacillus sp. Y412MC52]
 gi|261375013|gb|ACX77756.1| Tex-like protein protein-like protein [Geobacillus sp. Y412MC61]
 gi|317110236|gb|ADU92728.1| Tex-like protein [Geobacillus sp. Y412MC52]
          Length = 721

 Score = 34.5 bits (79), Expect = 4.4,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 9/66 (13%)

Query: 7   IIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++GIDP  R TG    +VD  G  L       I          R  +    L  ++ ++ 
Sbjct: 322 VLGIDPAYR-TGCKLAVVDETGKLLR------IDVIYPHPPQERKEEARAKLLRLLDDYH 374

Query: 65  PEEAAV 70
            +  A+
Sbjct: 375 VDMIAI 380


>gi|297528584|ref|YP_003669859.1| Tex-like protein protein-like protein [Geobacillus sp. C56-T3]
 gi|297251836|gb|ADI25282.1| Tex-like protein protein-like protein [Geobacillus sp. C56-T3]
          Length = 721

 Score = 34.5 bits (79), Expect = 4.4,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 9/66 (13%)

Query: 7   IIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++GIDP  R TG    +VD  G  L       I          R  +    L  ++ ++ 
Sbjct: 322 VLGIDPAYR-TGCKLAVVDETGKLLR------IDVIYPHPPQERKEEARAKLLRLLDDYH 374

Query: 65  PEEAAV 70
            +  A+
Sbjct: 375 VDMIAI 380


>gi|262381422|ref|ZP_06074560.1| RNA-binding protein [Bacteroides sp. 2_1_33B]
 gi|262296599|gb|EEY84529.1| RNA-binding protein [Bacteroides sp. 2_1_33B]
          Length = 708

 Score = 34.5 bits (79), Expect = 4.4,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 30/67 (44%), Gaps = 9/67 (13%)

Query: 6   RIIGIDPGLRRTGWGIV--DVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           R++G+DPG R TG  +V  D  G+    + +  I     Q+      +    ++ ++  +
Sbjct: 315 RVLGVDPGYR-TGCKLVCLDAQGN---LLHNEAIFPHPPQNEK---GKAAAKVSQLVATY 367

Query: 64  RPEEAAV 70
             +  A+
Sbjct: 368 AIDAIAI 374


>gi|229824286|ref|ZP_04450355.1| hypothetical protein GCWU000282_01591 [Catonella morbi ATCC 51271]
 gi|229786259|gb|EEP22373.1| hypothetical protein GCWU000282_01591 [Catonella morbi ATCC 51271]
          Length = 725

 Score = 34.5 bits (79), Expect = 4.4,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 9/71 (12%)

Query: 3   KSIRIIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEG-LTDV 59
           K   ++G+DP  R TG    +V+  G     +  G I     +    R  Q   G L D+
Sbjct: 317 KGRTVLGLDPAYR-TGCKLAVVNQTG---KVLDKGVIY--PHKPAGERQRQAASGQLADL 370

Query: 60  IKNWRPEEAAV 70
           IK    E  A+
Sbjct: 371 IKAHGVEVIAI 381


>gi|55820741|ref|YP_139183.1| transcriptional regulator [Streptococcus thermophilus LMG 18311]
 gi|55736726|gb|AAV60368.1| transcriptional regulator, putative [Streptococcus thermophilus LMG
           18311]
          Length = 710

 Score = 34.5 bits (79), Expect = 4.4,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 7/66 (10%)

Query: 7   IIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++G DP  R TG    +VD  G     +++  I      S A ++ Q  + L D+IK   
Sbjct: 311 VLGFDPAFR-TGAKLAVVDQTG---KLITTQVIYPVAPASQA-KIAQAKKDLADLIKEHA 365

Query: 65  PEEAAV 70
            E  A+
Sbjct: 366 IEIIAI 371


>gi|333030297|ref|ZP_08458358.1| Tex-like protein [Bacteroides coprosuis DSM 18011]
 gi|332740894|gb|EGJ71376.1| Tex-like protein [Bacteroides coprosuis DSM 18011]
          Length = 713

 Score = 34.5 bits (79), Expect = 4.4,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 15/70 (21%)

Query: 6   RIIGIDPGLRRTGWGIV--DVAGDNLCFVSSGTIVSCV---RQSLAFRLCQLYEGLTDVI 60
           R++GIDPG R TG  +V  D  G+    + +  I       ++  A         L  ++
Sbjct: 315 RVLGIDPGFR-TGCKVVCLDAQGN---LLHNENIFPHPPHNKKPEA------ASKLRKMV 364

Query: 61  KNWRPEEAAV 70
           + ++ E  A+
Sbjct: 365 EAYKIEAIAI 374


>gi|315178828|gb|ADT85742.1| conserved hypothetical protein [Vibrio furnissii NCTC 11218]
          Length = 526

 Score = 34.5 bits (79), Expect = 4.4,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 9/65 (13%)

Query: 8   IGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           +G+DPGLR TG    +VD  G     +++ TI      +   R       +  ++K    
Sbjct: 86  LGLDPGLR-TGCKVAVVDATG---KVLATDTIYPHQPHNQYDRAMA---SVAALVKQHHV 138

Query: 66  EEAAV 70
           +  A+
Sbjct: 139 DLIAI 143


>gi|312278071|gb|ADQ62728.1| Transcriptional accessory ribonuclease (YqgFc, S1), putative
           [Streptococcus thermophilus ND03]
          Length = 710

 Score = 34.5 bits (79), Expect = 4.4,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 7/66 (10%)

Query: 7   IIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++G DP  R TG    +VD  G     +++  I      S A ++ Q  + L D+IK   
Sbjct: 311 VLGFDPAFR-TGAKLAVVDQTG---KLITTQVIYPVAPASQA-KIAQAKKDLADLIKEHA 365

Query: 65  PEEAAV 70
            E  A+
Sbjct: 366 IEIIAI 371


>gi|251793287|ref|YP_003008015.1| protein YhgF [Aggregatibacter aphrophilus NJ8700]
 gi|247534682|gb|ACS97928.1| protein YhgF [Aggregatibacter aphrophilus NJ8700]
          Length = 771

 Score = 34.5 bits (79), Expect = 4.4,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 11/65 (16%)

Query: 8   IGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           +G+DPGLR TG    +VD  G     +++ TI     Q +   +  ++     +IK    
Sbjct: 330 MGLDPGLR-TGVKVAVVDNTG---KLLATDTIYPHTGQ-MDRAMLSIF----QLIKQHNV 380

Query: 66  EEAAV 70
           E  A+
Sbjct: 381 ELIAI 385


>gi|119471392|ref|ZP_01613864.1| conserved protein with nucleic acid-binding protein-like domain
           (Transcriptional accessory protein) [Alteromonadales
           bacterium TW-7]
 gi|119445668|gb|EAW26952.1| conserved protein with nucleic acid-binding protein-like domain
           (Transcriptional accessory protein) [Alteromonadales
           bacterium TW-7]
          Length = 774

 Score = 34.5 bits (79), Expect = 4.6,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 11/66 (16%)

Query: 8   IGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFR-LCQLYEGLTDVIKNWR 64
           +G+DPGLR TG    +VD  G     +++ TI     Q+   + L      L  + +  +
Sbjct: 326 LGLDPGLR-TGCKIAVVDSTG---KLLTTQTIFPHAPQNHWDKSLRT----LEQLCRQHK 377

Query: 65  PEEAAV 70
            E  A+
Sbjct: 378 VELIAI 383


>gi|313669044|ref|YP_004049328.1| hypothetical protein NLA_17660 [Neisseria lactamica ST-640]
 gi|313006506|emb|CBN87970.1| hypothetical protein NLA_17660 [Neisseria lactamica 020-06]
          Length = 1082

 Score = 34.5 bits (79), Expect = 4.6,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 23/59 (38%), Gaps = 11/59 (18%)

Query: 2  RKSIR-IIGIDPGLRRTGWGI--VDVAGDNLCFVSSG--------TIVSCVRQSLAFRL 49
             +  I+G+D G+   GW +  +D   + +  +  G           +    ++A RL
Sbjct: 6  PNPMNYILGLDIGIASVGWAMVEIDKEENPIRLIDLGVRVFERAEVPKTGDSLAMARRL 64


>gi|56418769|ref|YP_146087.1| hypothetical protein GK0234 [Geobacillus kaustophilus HTA426]
 gi|56378611|dbj|BAD74519.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
          Length = 721

 Score = 34.5 bits (79), Expect = 4.6,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 9/66 (13%)

Query: 7   IIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++GIDP  R TG    +VD  G  L       I          R  +    L  ++ ++ 
Sbjct: 322 VLGIDPAYR-TGCKLAVVDETGKLLR------IDVIYPHPPQERKEEARAKLLRLLDDYH 374

Query: 65  PEEAAV 70
            +  A+
Sbjct: 375 VDMIAI 380


>gi|153950179|ref|YP_001402930.1| hypothetical protein YpsIP31758_3982 [Yersinia pseudotuberculosis
           IP 31758]
 gi|152961674|gb|ABS49135.1| conserved hypothetical protein [Yersinia pseudotuberculosis IP
           31758]
          Length = 791

 Score = 34.5 bits (79), Expect = 4.7,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 33/86 (38%), Gaps = 23/86 (26%)

Query: 1   MRKSIRIIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTD 58
           MR ++   G+DPGLR TG    +VD  G     V+  TI     Q+           +  
Sbjct: 325 MRATM---GLDPGLR-TGVKVAVVDATG---KLVAFDTIYPHTGQAAKA-----AAVVAA 372

Query: 59  VIKNWRPEEAAV---------EQVFV 75
           +    + E  A+         E+ FV
Sbjct: 373 LCIKHQVELVAIGNGTASRETERFFV 398


>gi|228472378|ref|ZP_04057143.1| conserved hypothetical protein [Capnocytophaga gingivalis ATCC
          33624]
 gi|228276246|gb|EEK14981.1| conserved hypothetical protein [Capnocytophaga gingivalis ATCC
          33624]
          Length = 135

 Score = 34.5 bits (79), Expect = 4.8,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 7/58 (12%)

Query: 5  IRIIGIDPGLRRTGWGIVDVAGDNLCFVSS--GTIVSCVRQSLAFRLCQLYEGLTDVI 60
          +RI+ ID G +R G  + D     L  ++S   T+ +        + CQ  E +  +I
Sbjct: 1  MRILAIDYGTKRCGIAVTD----ELKLIASALATVETTELLDFLEKYCQ-AEQVERII 53


>gi|294782090|ref|ZP_06747416.1| glucokinase [Fusobacterium sp. 1_1_41FAA]
 gi|294480731|gb|EFG28506.1| glucokinase [Fusobacterium sp. 1_1_41FAA]
          Length = 315

 Score = 34.5 bits (79), Expect = 4.8,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 3/55 (5%)

Query: 8  IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
          IGID G   T  G+VD+ G+    + S  I +  +Q +   L +++E   D++  
Sbjct: 5  IGIDLGGTNTKIGVVDLEGN---LIISKIIKTHSKQKVDKTLERIWETSKDLLAK 56


>gi|297616549|ref|YP_003701708.1| Holliday junction resolvase YqgF [Syntrophothermus lipocalidus
          DSM 12680]
 gi|297144386|gb|ADI01143.1| Holliday junction resolvase YqgF [Syntrophothermus lipocalidus
          DSM 12680]
          Length = 144

 Score = 34.5 bits (79), Expect = 4.9,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 9/66 (13%)

Query: 5  IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
          +RI+G+DPG +R G  I D  G     ++S  I           L    E +  + + ++
Sbjct: 1  MRILGLDPGEKRIGVAISDALGITAQPLTS--IQRSS-------LKADIEAIRQICETYQ 51

Query: 65 PEEAAV 70
           E   +
Sbjct: 52 VEHIVL 57


>gi|22127783|ref|NP_671206.1| hypothetical protein y3913 [Yersinia pestis KIM 10]
 gi|45439997|ref|NP_991536.1| RNA-binding protein [Yersinia pestis biovar Microtus str. 91001]
 gi|108809326|ref|YP_653242.1| hypothetical protein YPA_3335 [Yersinia pestis Antiqua]
 gi|108814091|ref|YP_649858.1| hypothetical protein YPN_3931 [Yersinia pestis Nepal516]
 gi|145597384|ref|YP_001161459.1| hypothetical protein YPDSF_0061 [Yersinia pestis Pestoides F]
 gi|150260816|ref|ZP_01917544.1| predicted transcriptional accessory protein [Yersinia pestis
           CA88-4125]
 gi|162421540|ref|YP_001608058.1| hypothetical protein YpAngola_A3743 [Yersinia pestis Angola]
 gi|165928028|ref|ZP_02223860.1| conserved hypothetical protein [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165936122|ref|ZP_02224691.1| conserved hypothetical protein [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|166010602|ref|ZP_02231500.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166213288|ref|ZP_02239323.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167398728|ref|ZP_02304252.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167418783|ref|ZP_02310536.1| conserved hypothetical protein [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167425730|ref|ZP_02317483.1| conserved hypothetical protein [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|167468692|ref|ZP_02333396.1| hypothetical protein YpesF_12509 [Yersinia pestis FV-1]
 gi|218927345|ref|YP_002345220.1| hypothetical protein YPO0134 [Yersinia pestis CO92]
 gi|229836385|ref|ZP_04456552.1| predicted transcriptional accessory protein [Yersinia pestis
           Pestoides A]
 gi|229839990|ref|ZP_04460149.1| predicted transcriptional accessory protein [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229842071|ref|ZP_04462226.1| predicted transcriptional accessory protein [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229904628|ref|ZP_04519739.1| predicted transcriptional accessory protein [Yersinia pestis
           Nepal516]
 gi|270488159|ref|ZP_06205233.1| S1 RNA binding domain protein [Yersinia pestis KIM D27]
 gi|294502224|ref|YP_003566286.1| hypothetical protein YPZ3_0114 [Yersinia pestis Z176003]
 gi|21960912|gb|AAM87457.1|AE013996_2 hypothetical protein y3913 [Yersinia pestis KIM 10]
 gi|45434852|gb|AAS60413.1| Predicted RNA binding protein, Contains S1 domain [Yersinia pestis
           biovar Microtus str. 91001]
 gi|108777739|gb|ABG20258.1| hypothetical protein YPN_3931 [Yersinia pestis Nepal516]
 gi|108781239|gb|ABG15297.1| hypothetical protein YPA_3335 [Yersinia pestis Antiqua]
 gi|115345956|emb|CAL18820.1| conserved hypothetical protein [Yersinia pestis CO92]
 gi|145209080|gb|ABP38487.1| hypothetical protein YPDSF_0061 [Yersinia pestis Pestoides F]
 gi|149290224|gb|EDM40301.1| predicted transcriptional accessory protein [Yersinia pestis
           CA88-4125]
 gi|162354355|gb|ABX88303.1| conserved hypothetical protein [Yersinia pestis Angola]
 gi|165915736|gb|EDR34344.1| conserved hypothetical protein [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|165919977|gb|EDR37278.1| conserved hypothetical protein [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165990692|gb|EDR42993.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166205586|gb|EDR50066.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166962777|gb|EDR58798.1| conserved hypothetical protein [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167051232|gb|EDR62640.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167055420|gb|EDR65214.1| conserved hypothetical protein [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|229678746|gb|EEO74851.1| predicted transcriptional accessory protein [Yersinia pestis
           Nepal516]
 gi|229690381|gb|EEO82435.1| predicted transcriptional accessory protein [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229696356|gb|EEO86403.1| predicted transcriptional accessory protein [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229706453|gb|EEO92460.1| predicted transcriptional accessory protein [Yersinia pestis
           Pestoides A]
 gi|262360303|gb|ACY57024.1| hypothetical protein YPD4_0115 [Yersinia pestis D106004]
 gi|270336663|gb|EFA47440.1| S1 RNA binding domain protein [Yersinia pestis KIM D27]
 gi|294352683|gb|ADE63024.1| hypothetical protein YPZ3_0114 [Yersinia pestis Z176003]
 gi|320013270|gb|ADV96841.1| 30S ribosomal protein S1 [Yersinia pestis biovar Medievalis str.
           Harbin 35]
          Length = 791

 Score = 34.5 bits (79), Expect = 4.9,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 33/86 (38%), Gaps = 23/86 (26%)

Query: 1   MRKSIRIIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTD 58
           MR ++   G+DPGLR TG    +VD  G     V+  TI     Q+           +  
Sbjct: 325 MRATM---GLDPGLR-TGVKVAVVDATG---KLVAFDTIYPHTGQAAKA-----AAVVAA 372

Query: 59  VIKNWRPEEAAV---------EQVFV 75
           +    + E  A+         E+ FV
Sbjct: 373 LCIKHQVELVAIGNGTASRETERFFV 398


>gi|302340135|ref|YP_003805341.1| Tex-like protein [Spirochaeta smaragdinae DSM 11293]
 gi|301637320|gb|ADK82747.1| Tex-like protein [Spirochaeta smaragdinae DSM 11293]
          Length = 732

 Score = 34.5 bits (79), Expect = 4.9,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 27/68 (39%), Gaps = 13/68 (19%)

Query: 7   IIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLY--EGLTDVIKN 62
           ++ +DPGLR TG    ++   G     +    I       L  +  ++     + ++I  
Sbjct: 339 VLALDPGLR-TGCKLAVISSGG---ALLEHDVIF-----PLPPQNKKVEATRRILELIAQ 389

Query: 63  WRPEEAAV 70
           +  E  AV
Sbjct: 390 YGIEAVAV 397


>gi|123496837|ref|XP_001327049.1| Dynein heavy chain family protein [Trichomonas vaginalis G3]
 gi|121909973|gb|EAY14826.1| Dynein heavy chain family protein [Trichomonas vaginalis G3]
          Length = 4102

 Score = 34.5 bits (79), Expect = 4.9,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 4/50 (8%)

Query: 22  VDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVE 71
           V+V   N+ F   G ++   R  +   L +L+ GL   +  +R    ++E
Sbjct: 559 VEVDSSNVSFEDCGKLIQSTRNEIEEPLKELFSGLEKFLDQFR----SIE 604


>gi|51598056|ref|YP_072247.1| hypothetical protein YPTB3766 [Yersinia pseudotuberculosis IP
           32953]
 gi|186897256|ref|YP_001874368.1| RNA-binding S1 domain-containing protein [Yersinia
           pseudotuberculosis PB1/+]
 gi|51591338|emb|CAH23004.1| conserved hypothetical protein [Yersinia pseudotuberculosis IP
           32953]
 gi|186700282|gb|ACC90911.1| RNA binding S1 domain protein [Yersinia pseudotuberculosis PB1/+]
          Length = 791

 Score = 34.5 bits (79), Expect = 4.9,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 33/86 (38%), Gaps = 23/86 (26%)

Query: 1   MRKSIRIIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTD 58
           MR ++   G+DPGLR TG    +VD  G     V+  TI     Q+           +  
Sbjct: 325 MRATM---GLDPGLR-TGVKVAVVDATG---KLVAFDTIYPHTGQAAKA-----AAVVAA 372

Query: 59  VIKNWRPEEAAV---------EQVFV 75
           +    + E  A+         E+ FV
Sbjct: 373 LCIKHQVELVAIGNGTASRETERFFV 398


>gi|302389909|ref|YP_003825730.1| Holliday junction resolvase YqgF [Thermosediminibacter oceani DSM
          16646]
 gi|302200537|gb|ADL08107.1| Holliday junction resolvase YqgF [Thermosediminibacter oceani DSM
          16646]
          Length = 145

 Score = 34.5 bits (79), Expect = 5.0,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 33/67 (49%), Gaps = 11/67 (16%)

Query: 5  IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTI-VSCVRQSLAFRLCQLYEGLTDVIKNW 63
          +RI+G+D G +R G  + D  G  +     G I    V++ +        E +++++K +
Sbjct: 1  MRILGLDVGNKRIGVAVSDELG--ITAQGVGVIERGDVKRDI--------ERISEIVKRY 50

Query: 64 RPEEAAV 70
          + ++  +
Sbjct: 51 QVKKVII 57


>gi|170742227|ref|YP_001770882.1| putative bacteriophage-related protein [Methylobacterium sp. 4-46]
 gi|168196501|gb|ACA18448.1| putative bacteriophage-related protein [Methylobacterium sp. 4-46]
          Length = 170

 Score = 34.5 bits (79), Expect = 5.0,   Method: Composition-based stats.
 Identities = 40/174 (22%), Positives = 62/174 (35%), Gaps = 24/174 (13%)

Query: 5   IR-IIGIDPGL-RRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEG-LTDVIK 61
           +R I+ +D  L  R GW      G        GT V         R    +   L D+I 
Sbjct: 1   MRKILALD--LATRCGWAC-GAPGSEPT---YGTKVLPSTGEDIGRFADAFNTWLLDMIT 54

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQAR---AIA---ILSPALARIPVSEYAPNTIKKAV 115
              P       VF       T  L  AR    +A     +  L ++ V E+   ++KK  
Sbjct: 55  LEDPGVV----VFEAPVMSGTTSLAAARKLYGLAWHTEFACRLRQVRVMEHHLQSVKKFF 110

Query: 116 IGVGHGDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYH---ANSGYYKIA 166
            G G  DK  +    +        K  +AADAL +  C  +     ++G +++ 
Sbjct: 111 AGSGRADKAAMIAAAER--QGWAPKDDNAADALGLWACAVHQLAPQHAGRFQLG 162


>gi|188585039|ref|YP_001916584.1| peptidase M22 glycoprotease [Natranaerobius thermophilus
          JW/NM-WN-LF]
 gi|179349726|gb|ACB83996.1| peptidase M22 glycoprotease [Natranaerobius thermophilus
          JW/NM-WN-LF]
          Length = 236

 Score = 34.5 bits (79), Expect = 5.1,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 44/93 (47%), Gaps = 13/93 (13%)

Query: 5  IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
          ++++GID   +     ++D  G+ L     G  +    Q+ + RL  L + L D +   +
Sbjct: 1  MKVLGIDTATKTCCVALID--GNKL----MGEFILNNFQTHSERLMPLIDKLLDSLGI-K 53

Query: 65 PEEAAVEQVFVNKDAVA----TLKLGQARAIAI 93
           +E  +E + V++   A     + +G A+ +A+
Sbjct: 54 IDE--IEGIAVSRGPGAFTGLRIGIGTAQGLAM 84


>gi|157151461|ref|YP_001451289.1| Holliday junction resolvase-like protein [Streptococcus gordonii
           str. Challis substr. CH1]
 gi|189046109|sp|A8AZS9|RUVX_STRGC RecName: Full=Putative Holliday junction resolvase
 gi|157076255|gb|ABV10938.1| conserved hypothetical protein TIGR00250 [Streptococcus gordonii
           str. Challis substr. CH1]
          Length = 139

 Score = 34.5 bits (79), Expect = 5.1,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 40/106 (37%), Gaps = 17/106 (16%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+G+D G +  G  I D  G     +    I     Q         +E L +++  ++
Sbjct: 1   MRIMGLDVGSKTVGVAISDPLGFTAQGLE--IIQINEDQEEFG-----FERLGELVAEYK 53

Query: 65  PEEAAVEQVFVNKDAVATLK----LGQARAIAILSPALARIPVSEY 106
            ++  +    + K+   T        QA    +    L  +PV EY
Sbjct: 54  VDKFVI---GLPKNMNNTSGPRVEASQAYGAKV--TELFGLPV-EY 93


>gi|325847830|ref|ZP_08170052.1| S1 RNA binding domain protein [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325480848|gb|EGC83901.1| S1 RNA binding domain protein [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 575

 Score = 34.5 bits (79), Expect = 5.2,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 9/66 (13%)

Query: 7   IIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           IIG+DPG R TG    ++D  G    ++    I      S      ++   L + IK + 
Sbjct: 193 IIGLDPGYR-TGCKVAVIDKHG---KYLDQAVIYPVKPHSKEREAIEI---LKNFIKKYH 245

Query: 65  PEEAAV 70
            +  A+
Sbjct: 246 VDIIAL 251


>gi|315659848|ref|ZP_07912707.1| conserved hypothetical protein [Staphylococcus lugdunensis
          M23590]
 gi|315495136|gb|EFU83472.1| conserved hypothetical protein [Staphylococcus lugdunensis
          M23590]
          Length = 1054

 Score = 34.5 bits (79), Expect = 5.2,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 18/30 (60%), Gaps = 2/30 (6%)

Query: 7  IIGIDPGLRRTGWGIVDVAGDNLCFVSSGT 36
          I+G+D G+   G+G++D    N+  + +G 
Sbjct: 6  ILGLDIGITSVGYGLIDYETKNI--IDAGV 33


>gi|322436302|ref|YP_004218514.1| UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)
           pyrophosphoryl-undecaprenol N-acetylglucosamine
           transferase [Acidobacterium sp. MP5ACTX9]
 gi|321164029|gb|ADW69734.1| UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)
           pyrophosphoryl-undecaprenol N-acetylglucosamine
           transferase [Acidobacterium sp. MP5ACTX9]
          Length = 359

 Score = 34.5 bits (79), Expect = 5.2,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 39/97 (40%), Gaps = 22/97 (22%)

Query: 21  IVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYE---GLT---DVIKNWRPEEAAVEQVF 74
           +V  AG +L  +  G +      SLA RL  L +   G+     +++ ++P+        
Sbjct: 45  LVPEAGFSLELIHVGQL---KGVSLATRLRTLGDLPLGIAKCVAMLREFKPDVV------ 95

Query: 75  VNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTI 111
                      G A   A+++  L R+P   Y PN +
Sbjct: 96  -------VGVGGYASGPAMMAALLLRVPTVAYEPNAV 125


>gi|74313910|ref|YP_312329.1| hypothetical protein SSON_3538 [Shigella sonnei Ss046]
 gi|73857387|gb|AAZ90094.1| conserved hypothetical protein [Shigella sonnei Ss046]
          Length = 740

 Score = 34.5 bits (79), Expect = 5.2,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 11/65 (16%)

Query: 8   IGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           +G+DPGLR TG    +VD  G     V++ TI     Q+      ++   +  + +    
Sbjct: 297 MGLDPGLR-TGVKVAVVDATG---KLVATDTIYPHTGQA-----AKVAMTVAALCEKHNV 347

Query: 66  EEAAV 70
           E  A+
Sbjct: 348 ELVAI 352


>gi|88798566|ref|ZP_01114150.1| Transcriptional accessory protein [Reinekea sp. MED297]
 gi|88778666|gb|EAR09857.1| Transcriptional accessory protein [Reinekea sp. MED297]
          Length = 775

 Score = 34.5 bits (79), Expect = 5.2,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 9/65 (13%)

Query: 8   IGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           IG+DPGLR TG     VD  G     +  G I          R+ +  + L  +   +  
Sbjct: 326 IGLDPGLR-TGVKVACVDATG---KVLDHGAIFP---TPPQNRIKEAEQVLVAMCAKYNV 378

Query: 66  EEAAV 70
           E  A+
Sbjct: 379 ELIAI 383


>gi|332879252|ref|ZP_08446949.1| Tex-like protein [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332682672|gb|EGJ55572.1| Tex-like protein [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 716

 Score = 34.5 bits (79), Expect = 5.3,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 30/67 (44%), Gaps = 9/67 (13%)

Query: 6   RIIGIDPGLRRTGWGIV--DVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           R++G+DPG R TG  +V  D  G+    + +  I     ++   +       L  +++ +
Sbjct: 324 RVLGLDPGFR-TGCKVVCLDAQGN---LLHNEAIYPHPPRNEYAQAQ---RKLQKLVEQY 376

Query: 64  RPEEAAV 70
             +  A+
Sbjct: 377 DIQAIAI 383


>gi|297587825|ref|ZP_06946469.1| S1 RNA binding domain protein [Finegoldia magna ATCC 53516]
 gi|297574514|gb|EFH93234.1| S1 RNA binding domain protein [Finegoldia magna ATCC 53516]
          Length = 697

 Score = 34.5 bits (79), Expect = 5.3,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 14/76 (18%)

Query: 1   MRKSIR---IIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTI-VSCVRQSLAFRLCQLYE 54
           M+  I+   IIG+DPG R TG    ++   GD   F+ S  I V+  R+    ++ +  E
Sbjct: 307 MQPPIKETAIIGLDPGFR-TGCKVAVISEYGD---FLDSAVIYVTDARK----QIQRADE 358

Query: 55  GLTDVIKNWRPEEAAV 70
            L D I  +  +  A+
Sbjct: 359 TLKDFIDKYNVKLIAI 374


>gi|33413577|gb|AAN05724.1| putative Holiday junction resolvase [Lactococcus phage c6A]
          Length = 84

 Score = 34.5 bits (79), Expect = 5.3,   Method: Composition-based stats.
 Identities = 15/87 (17%), Positives = 36/87 (41%), Gaps = 13/87 (14%)

Query: 6  RIIGIDPGLRR-----TGWGIVDVAGDNLCFVSSGTIVS-CVRQSLAFRLCQLYEGLTDV 59
          +I+ ID          TG+      G  L +V  G+I +   +++   R   +   + D+
Sbjct: 3  KILAIDFSTASKKDEGTGYAF--RKGGQL-YV--GSIKAYNPKKNAWERTFDIVNAIKDI 57

Query: 60 IKNW--RPEEAAVEQVFVNKDAVATLK 84
          I+ +  +    A+E   + ++   ++ 
Sbjct: 58 IEEFDLKDYHLAIETPIMGRNRKHSIT 84


>gi|331091336|ref|ZP_08340176.1| Holliday junction resolvase [Lachnospiraceae bacterium 2_1_46FAA]
 gi|330404497|gb|EGG84041.1| Holliday junction resolvase [Lachnospiraceae bacterium 2_1_46FAA]
          Length = 142

 Score = 34.5 bits (79), Expect = 5.3,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 6/66 (9%)

Query: 5  IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
          +RI+G+D G +  G  I     D LC  + G I +  R+    +L +    +  +IK + 
Sbjct: 1  MRIMGLDYGSKTVGVAI----SDALCLTAQG-IETIQRKE-ENKLRKTLARIETLIKEYE 54

Query: 65 PEEAAV 70
           ++  +
Sbjct: 55 VDKIVL 60


>gi|32472440|ref|NP_865434.1| RNA binding protein [Rhodopirellula baltica SH 1]
 gi|32443676|emb|CAD73118.1| conserved hypothetical protein-putative RNA binding protein
           [Rhodopirellula baltica SH 1]
          Length = 750

 Score = 34.5 bits (79), Expect = 5.3,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 12/69 (17%)

Query: 6   RI-IGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIV-SCVRQSLAFRLCQLYEGLTDVIK 61
           R+ IGIDPG R TG    +VD  G    F+++ TI  +  +   A       + L  +IK
Sbjct: 353 RVTIGIDPGFR-TGCKVAVVDGTG---KFLANTTIYPTPPKSDTAGA----SKQLLALIK 404

Query: 62  NWRPEEAAV 70
               E  A+
Sbjct: 405 KHNVELIAI 413


>gi|227498473|ref|ZP_03928619.1| conserved hypothetical protein [Acidaminococcus sp. D21]
 gi|226903931|gb|EEH89849.1| conserved hypothetical protein [Acidaminococcus sp. D21]
          Length = 138

 Score = 34.5 bits (79), Expect = 5.4,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 6/50 (12%)

Query: 5  IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSG--TIVSCVRQSLAFRLCQL 52
          +RI+G+D G R  G  + D  G     ++ G  TI     ++   RL +L
Sbjct: 1  MRIMGLDLGTRTIGVAVSDEMG----LIARGIETIRRSGTKNDLARLHEL 46


>gi|87310993|ref|ZP_01093118.1| ribosomal protein S1-like RNA-binding domain protein
           [Blastopirellula marina DSM 3645]
 gi|87286283|gb|EAQ78192.1| ribosomal protein S1-like RNA-binding domain protein
           [Blastopirellula marina DSM 3645]
          Length = 1043

 Score = 34.5 bits (79), Expect = 5.4,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 28/69 (40%), Gaps = 7/69 (10%)

Query: 3   KSIRIIGIDPGLRR-TGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
            S R++ IDPG R       +D  G     +  G I     +    R+ +  + L ++I+
Sbjct: 433 SSRRVMAIDPGFRSGCKLVALDQFG---SILEQGVIHLIGPED---RVARGRQRLIEMIR 486

Query: 62  NWRPEEAAV 70
               +  A+
Sbjct: 487 QHAVDIVAI 495


>gi|332299016|ref|YP_004440938.1| Tex-like protein [Treponema brennaborense DSM 12168]
 gi|332182119|gb|AEE17807.1| Tex-like protein [Treponema brennaborense DSM 12168]
          Length = 813

 Score = 34.5 bits (79), Expect = 5.5,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 29/75 (38%), Gaps = 15/75 (20%)

Query: 1   MRKSI---RIIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEG 55
           M++ I   R++G+DPG+R TG     +D  G    ++    +        A         
Sbjct: 324 MQQPIKGTRVLGVDPGIR-TGTKCAALDETG---KYLGYFVVKQVADPDGA------AAA 373

Query: 56  LTDVIKNWRPEEAAV 70
           +   I  +  +  AV
Sbjct: 374 IRKAIMQYNVQLVAV 388


>gi|78355361|ref|YP_386810.1| Holliday junction resolvase YqgF [Desulfovibrio desulfuricans
          subsp. desulfuricans str. G20]
 gi|146325569|sp|Q316N1|RUVX_DESDG RecName: Full=Putative Holliday junction resolvase
 gi|78217766|gb|ABB37115.1| Holliday junction resolvase YqgF [Desulfovibrio desulfuricans
          subsp. desulfuricans str. G20]
          Length = 144

 Score = 34.5 bits (79), Expect = 5.5,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 19/71 (26%)

Query: 5  IRIIGIDPGLRRTGWGIVDVAG-----DNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDV 59
          ++ +GID G RRTG  + D AG              TIV   R +        +  L  V
Sbjct: 1  MKYLGIDYGTRRTGIAVTDGAGMMAFPRR-------TIVMSTRDAF-------FAELLSV 46

Query: 60 IKNWRPEEAAV 70
          ++  RP    V
Sbjct: 47 VEEERPAGVVV 57


>gi|319900142|ref|YP_004159870.1| ROK family protein [Bacteroides helcogenes P 36-108]
 gi|319415173|gb|ADV42284.1| ROK family protein [Bacteroides helcogenes P 36-108]
          Length = 326

 Score = 34.5 bits (79), Expect = 5.6,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 13/72 (18%)

Query: 1  MRKSIR---IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLT 57
          M  S+    ++GID G   T +GIVD  G     ++SG+I +   +       Q+ E + 
Sbjct: 1  MNSSMEKPYVVGIDIGGTNTVFGIVDARG---TIIASGSIKTGAYE-------QVEEYVD 50

Query: 58 DVIKNWRPEEAA 69
          +V KN  P   A
Sbjct: 51 EVCKNLLPLIIA 62


>gi|241894819|ref|ZP_04782115.1| S1 domain RNA-binding protein [Weissella paramesenteroides ATCC
           33313]
 gi|241871940|gb|EER75691.1| S1 domain RNA-binding protein [Weissella paramesenteroides ATCC
           33313]
          Length = 727

 Score = 34.5 bits (79), Expect = 5.6,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 14/69 (20%)

Query: 7   IIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTI---VSCVRQSLAFRLCQLYEGLTDVIK 61
           ++G DPG+R TG    +VD AG    F+    I    +        R     E +  ++K
Sbjct: 331 VLGFDPGIR-TGSKLAVVDQAGQ---FLDKAVIYPHKAPKYDPEGAR-----EVIISLVK 381

Query: 62  NWRPEEAAV 70
            +     A+
Sbjct: 382 KYHVSIVAI 390


>gi|294638114|ref|ZP_06716371.1| protein YhgF [Edwardsiella tarda ATCC 23685]
 gi|291088746|gb|EFE21307.1| protein YhgF [Edwardsiella tarda ATCC 23685]
          Length = 775

 Score = 34.5 bits (79), Expect = 5.6,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 11/65 (16%)

Query: 8   IGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           +G+DPGLR TG    +VD  G     V++ TI     QS      +    +  + + +  
Sbjct: 329 MGLDPGLR-TGVKVAVVDATG---KLVATDTIYPHTGQS-----AKAAASVAQLCQKYSV 379

Query: 66  EEAAV 70
           E  A+
Sbjct: 380 ELVAI 384


>gi|323164969|gb|EFZ50760.1| protein yhgF [Shigella sonnei 53G]
          Length = 773

 Score = 34.5 bits (79), Expect = 5.7,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 11/65 (16%)

Query: 8   IGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           +G+DPGLR TG    +VD  G     V++ TI     Q+      ++   +  + +    
Sbjct: 330 MGLDPGLR-TGVKVAVVDATG---KLVATDTIYPHTGQA-----AKVAMTVAALCEKHNV 380

Query: 66  EEAAV 70
           E  A+
Sbjct: 381 ELVAI 385


>gi|154496555|ref|ZP_02035251.1| hypothetical protein BACCAP_00847 [Bacteroides capillosus ATCC
           29799]
 gi|150274188|gb|EDN01279.1| hypothetical protein BACCAP_00847 [Bacteroides capillosus ATCC
           29799]
          Length = 625

 Score = 34.5 bits (79), Expect = 5.7,   Method: Composition-based stats.
 Identities = 9/19 (47%), Positives = 15/19 (78%)

Query: 9   GIDPGLRRTGWGIVDVAGD 27
           GIDP   +TG+G++D+ G+
Sbjct: 138 GIDPYTGKTGYGVLDMKGN 156


>gi|325291402|ref|YP_004267583.1| CoA-substrate-specific enzyme activase [Syntrophobotulus glycolicus
           DSM 8271]
 gi|324966803|gb|ADY57582.1| CoA-substrate-specific enzyme activase [Syntrophobotulus glycolicus
           DSM 8271]
          Length = 1415

 Score = 34.2 bits (78), Expect = 5.7,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 9/63 (14%)

Query: 8   IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEE 67
           +GID G   T   ++D  G  L +   G+       S    L  LY+ +        P E
Sbjct: 321 LGIDAGSTTTKLALIDQEG-KLLYSHYGSNGGSPLNSTREALQALYQEM--------PPE 371

Query: 68  AAV 70
           AA+
Sbjct: 372 AAI 374


>gi|257469004|ref|ZP_05633098.1| transcription accessory protein [Fusobacterium ulcerans ATCC 49185]
 gi|317063251|ref|ZP_07927736.1| transcription accessory protein [Fusobacterium ulcerans ATCC 49185]
 gi|313688927|gb|EFS25762.1| transcription accessory protein [Fusobacterium ulcerans ATCC 49185]
          Length = 721

 Score = 34.2 bits (78), Expect = 5.7,   Method: Composition-based stats.
 Identities = 12/75 (16%), Positives = 30/75 (40%), Gaps = 9/75 (12%)

Query: 1   MRKSIR---IIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEG 55
           M+  ++   ++ +DPG R TG    ++D  G    ++               +L +  + 
Sbjct: 310 MQAPLKEKSVLALDPGYR-TGCKVAVIDRNG---FYIEKDVFFLVEEMHSPRQLAEAEKR 365

Query: 56  LTDVIKNWRPEEAAV 70
           + D +K +  +   +
Sbjct: 366 IVDYVKKYEIDIIVI 380


>gi|319652612|ref|ZP_08006726.1| uroporphyrin-III C-methyltransferase [Bacillus sp. 2_A_57_CT2]
 gi|317395686|gb|EFV76410.1| uroporphyrin-III C-methyltransferase [Bacillus sp. 2_A_57_CT2]
          Length = 253

 Score = 34.2 bits (78), Expect = 5.8,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 16/35 (45%)

Query: 91  IAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
             I +PA A IPV+          V G G  +K+Q
Sbjct: 119 AGIAAPAYAGIPVTHRDHAASFAIVTGHGRAEKEQ 153


>gi|239827825|ref|YP_002950449.1| Holliday junction resolvase YqgF [Geobacillus sp. WCH70]
 gi|259495706|sp|C5D4Z1|RUVX_GEOSW RecName: Full=Putative Holliday junction resolvase
 gi|239808118|gb|ACS25183.1| Holliday junction resolvase YqgF [Geobacillus sp. WCH70]
          Length = 138

 Score = 34.2 bits (78), Expect = 5.8,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 27/66 (40%), Gaps = 7/66 (10%)

Query: 5  IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
          +R++G+D G +  G  +     D L + + G I +        R     + L ++I  + 
Sbjct: 1  MRVLGLDLGTKTLGVAV----SDELGWTAQG-IETISIDE--ERGEYGLKRLREIIDEYE 53

Query: 65 PEEAAV 70
           +   V
Sbjct: 54 VDTIVV 59


>gi|257082728|ref|ZP_05577089.1| RNA binding protein S1 [Enterococcus faecalis E1Sol]
 gi|256990758|gb|EEU78060.1| RNA binding protein S1 [Enterococcus faecalis E1Sol]
          Length = 730

 Score = 34.2 bits (78), Expect = 5.8,   Method: Composition-based stats.
 Identities = 22/115 (19%), Positives = 43/115 (37%), Gaps = 22/115 (19%)

Query: 7   IIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++G DP  R TG    +VD  G     ++   I      + A R          +I++++
Sbjct: 326 VLGFDPAYR-TGCKLAVVDETG---KVLAIQVIYPHKPATAAKR-EAAGPAFKKIIEDYQ 380

Query: 65  PEEAAV-------E-QVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTI 111
            +  A+       E ++FV +   A       R +  +    A   V  Y+ + +
Sbjct: 381 VDMVAIGNGTASRESELFVAEQLKAVQ-----RDVFYVIVNEAGASV--YSASEV 428


>gi|170022431|ref|YP_001718936.1| RNA-binding S1 domain-containing protein [Yersinia
           pseudotuberculosis YPIII]
 gi|169748965|gb|ACA66483.1| RNA binding S1 domain protein [Yersinia pseudotuberculosis YPIII]
          Length = 791

 Score = 34.2 bits (78), Expect = 5.8,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 14/72 (19%)

Query: 1   MRKSIRIIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTD 58
           MR ++   G+DPGLR TG    +VD  G     V+  TI     Q+           +  
Sbjct: 325 MRATM---GLDPGLR-TGVKVAVVDATG---KLVAFDTIYPHTGQAAKA-----AAVVAA 372

Query: 59  VIKNWRPEEAAV 70
           +    + E  A+
Sbjct: 373 LCIKHQVELVAI 384


>gi|83592173|ref|YP_425925.1| leucine-rich repeat-containing protein [Rhodospirillum rubrum ATCC
           11170]
 gi|83575087|gb|ABC21638.1| Leucine-rich repeat [Rhodospirillum rubrum ATCC 11170]
          Length = 1085

 Score = 34.2 bits (78), Expect = 5.9,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 3/39 (7%)

Query: 112 KKAVIGVGHGDKKQIHMMLKMLMPESFFKGKDAADALAI 150
           K  V+G G   K Q+    + L+   F +  D+  A+A+
Sbjct: 434 KMLVLGNGRVGKTQV---CRQLLGAPFEENADSTHAIAV 469


>gi|325127576|gb|EGC50499.1| hypothetical protein NMXN1568_1685 [Neisseria meningitidis N1568]
          Length = 1081

 Score = 34.2 bits (78), Expect = 5.9,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 22/53 (41%), Gaps = 10/53 (18%)

Query: 7  IIGIDPGLRRTGWGI--VDVAGDNLCFVSSG--------TIVSCVRQSLAFRL 49
          I+G+D G+   GW +  +D   + +  +  G           +    ++A RL
Sbjct: 12 ILGLDIGIASVGWAMVEIDEEENPIRLIDLGVRVFERAEVPKTGDSLAMARRL 64


>gi|304388355|ref|ZP_07370468.1| csn1 family CRISPR-associated protein [Neisseria meningitidis
          ATCC 13091]
 gi|304337672|gb|EFM03828.1| csn1 family CRISPR-associated protein [Neisseria meningitidis
          ATCC 13091]
          Length = 1082

 Score = 34.2 bits (78), Expect = 5.9,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 22/53 (41%), Gaps = 10/53 (18%)

Query: 7  IIGIDPGLRRTGWGI--VDVAGDNLCFVSSG--------TIVSCVRQSLAFRL 49
          I+G+D G+   GW +  +D   + +  +  G           +    ++A RL
Sbjct: 12 ILGLDIGIASVGWAMVEIDEEENPIRLIDLGVRVFERAEVPKTGDSLAMARRL 64


>gi|261393167|emb|CAX50779.1| conserved hypothetical protein [Neisseria meningitidis 8013]
          Length = 1082

 Score = 34.2 bits (78), Expect = 5.9,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 22/53 (41%), Gaps = 10/53 (18%)

Query: 7  IIGIDPGLRRTGWGI--VDVAGDNLCFVSSG--------TIVSCVRQSLAFRL 49
          I+G+D G+   GW +  +D   + +  +  G           +    ++A RL
Sbjct: 12 ILGLDIGIASVGWAMVEIDEEENPIRLIDLGVRVFERAEVPKTGDSLAMARRL 64


>gi|333023225|ref|ZP_08451289.1| putative transcription accessory protein [Streptomyces sp. Tu6071]
 gi|332743077|gb|EGJ73518.1| putative transcription accessory protein [Streptomyces sp. Tu6071]
          Length = 853

 Score = 34.2 bits (78), Expect = 6.0,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 19/70 (27%)

Query: 8   IGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCV-----RQSLAFRLCQLYEGLTDVI 60
           +G+DPGLR TG    +VD  G     V++ TI          +SLA         L  + 
Sbjct: 338 LGLDPGLR-TGVKVAVVDATG---KVVATDTIYPHAPRNRWDESLAT--------LARLA 385

Query: 61  KNWRPEEAAV 70
           +    +  A+
Sbjct: 386 ERHHVDLVAI 395


>gi|309378418|emb|CBX22971.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 241

 Score = 34.2 bits (78), Expect = 6.1,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 22/53 (41%), Gaps = 10/53 (18%)

Query: 7  IIGIDPGLRRTGWGI--VDVAGDNLCFVSSGT--------IVSCVRQSLAFRL 49
          I+G+D G+   GW +  +D   + +  +  G           +    ++A RL
Sbjct: 12 ILGLDIGIASVGWAMVEIDKEENPIRLIDLGVRVFERAEMPKTGDSLAMARRL 64


>gi|238751149|ref|ZP_04612644.1| hypothetical protein yrohd0001_13330 [Yersinia rohdei ATCC 43380]
 gi|238710627|gb|EEQ02850.1| hypothetical protein yrohd0001_13330 [Yersinia rohdei ATCC 43380]
          Length = 793

 Score = 34.2 bits (78), Expect = 6.1,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 14/72 (19%)

Query: 1   MRKSIRIIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTD 58
           MR ++   G+DPGLR TG    +VD  G     V+  TI     Q+           +  
Sbjct: 325 MRATM---GLDPGLR-TGVKVAVVDATG---KLVAFDTIYPHTGQAAKA-----AAVVAA 372

Query: 59  VIKNWRPEEAAV 70
           +    + E  A+
Sbjct: 373 LCIKHQVELVAI 384


>gi|167756782|ref|ZP_02428909.1| hypothetical protein CLORAM_02331 [Clostridium ramosum DSM 1402]
 gi|237734500|ref|ZP_04564981.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|167702957|gb|EDS17536.1| hypothetical protein CLORAM_02331 [Clostridium ramosum DSM 1402]
 gi|229382320|gb|EEO32411.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 139

 Score = 34.2 bits (78), Expect = 6.2,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 7/65 (10%)

Query: 6  RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
          RI+G+D G R  G  I D  G     ++ G      R     R  +    +  +I   + 
Sbjct: 3  RILGLDLGSRTCGIAISDTLG----MLAHGIETYRFRDDDYDRAAK---HVVALINEHQI 55

Query: 66 EEAAV 70
          +   +
Sbjct: 56 KTVVL 60


>gi|167045621|gb|ABZ10270.1| putative ArgK protein [uncultured marine microorganism
           HF4000_APKG10K24]
          Length = 316

 Score = 34.2 bits (78), Expect = 6.3,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 40/93 (43%), Gaps = 8/93 (8%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLC----FVSSGT-IVSCVRQSLAFRLCQLYEGLTDVIK 61
           IIG+DP    TG  ++   GD +     ++  G  I S   +  A  L +   G+T ++ 
Sbjct: 77  IIGVDPSSPFTGGALL---GDRVRMQRHYLDPGVFIRSIATRGQAGGLPRTVRGITRLLD 133

Query: 62  NWRPEEAAVEQVFVNKDAVATLKLGQARAIAIL 94
               +   VE V V +  +  L++     + ++
Sbjct: 134 ASGIDVILVETVGVGQTELGVLEVADTVLVVLM 166


>gi|53803175|ref|YP_115053.1| hypothetical protein MCA2649 [Methylococcus capsulatus str. Bath]
 gi|53756936|gb|AAU91227.1| conserved hypothetical protein [Methylococcus capsulatus str. Bath]
          Length = 158

 Score = 34.2 bits (78), Expect = 6.3,   Method: Composition-based stats.
 Identities = 21/133 (15%), Positives = 40/133 (30%), Gaps = 18/133 (13%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRL---CQLYEGLTDVIKNW 63
           I+ +D G   TGW +    G +      G I S        R       +      +   
Sbjct: 5   ILALDLGTT-TGWAL---RGGD------GHITSGSESFRPQRFEGGGMRFLRFKRWLTEL 54

Query: 64  RPEEAAVEQVFVNKDAVATLK-LGQARAIAILS----PALARIPVSEYAPNTIKKAVIGV 118
           +     +  ++  +           A    + +        +IP       TIKK   G 
Sbjct: 55  KGHVDGIGALYFEEVRRHASTDAAHAYGGFLATLTAWCEHHQIPYQGVPVGTIKKHATGK 114

Query: 119 GHGDKKQIHMMLK 131
           G+  K+ +   ++
Sbjct: 115 GNAGKEGVIASVR 127


>gi|326803430|ref|YP_004321248.1| RNAse H domain protein, YqgF family [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326651353|gb|AEA01536.1| RNAse H domain protein, YqgF family [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 140

 Score = 34.2 bits (78), Expect = 6.3,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 44/104 (42%), Gaps = 16/104 (15%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+G+D G +  G  I D  G    + + G I +      A +    +  L  +I++++
Sbjct: 1   MRIMGLDVGSKTVGVAISDPFG----WTAQG-IETIKIDEEAGKFG--FSRLRQLIEDYQ 53

Query: 65  PEEAAVEQVFVN--KDAVATLK--LGQARAIAILSPALARIPVS 104
                VE++ +   K+   T       +R    ++  L  +PV 
Sbjct: 54  -----VEKIVIGLPKNMNNTEGPRAEASRHYGDMAIELFDLPVF 92


>gi|301309904|ref|ZP_07215843.1| S1 RNA binding domain protein [Bacteroides sp. 20_3]
 gi|300831478|gb|EFK62109.1| S1 RNA binding domain protein [Bacteroides sp. 20_3]
          Length = 708

 Score = 34.2 bits (78), Expect = 6.3,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 29/67 (43%), Gaps = 9/67 (13%)

Query: 6   RIIGIDPGLRRTGWGIV--DVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           R++G+DPG R TG  +V  D  G+    + +  I     Q+      +    +  ++  +
Sbjct: 315 RVLGVDPGYR-TGCKLVCLDAQGN---LLHNEAIFPHPPQNEK---GKAAAKVAQLVATY 367

Query: 64  RPEEAAV 70
             +  A+
Sbjct: 368 AIDAIAI 374


>gi|150008009|ref|YP_001302752.1| RNA-binding protein [Parabacteroides distasonis ATCC 8503]
 gi|149936433|gb|ABR43130.1| putative RNA binding protein with S1 RNA-binding domain
           [Parabacteroides distasonis ATCC 8503]
          Length = 708

 Score = 34.2 bits (78), Expect = 6.3,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 29/67 (43%), Gaps = 9/67 (13%)

Query: 6   RIIGIDPGLRRTGWGIV--DVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           R++G+DPG R TG  +V  D  G+    + +  I     Q+      +    +  ++  +
Sbjct: 315 RVLGVDPGYR-TGCKLVCLDAQGN---LLHNEAIFPHPPQNEK---GKAAAKVAQLVATY 367

Query: 64  RPEEAAV 70
             +  A+
Sbjct: 368 AIDAIAI 374


>gi|154482585|ref|ZP_02025033.1| hypothetical protein EUBVEN_00252 [Eubacterium ventriosum ATCC
          27560]
 gi|149736610|gb|EDM52496.1| hypothetical protein EUBVEN_00252 [Eubacterium ventriosum ATCC
          27560]
          Length = 142

 Score = 34.2 bits (78), Expect = 6.3,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 26/66 (39%), Gaps = 6/66 (9%)

Query: 5  IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
          +RI+G+D G +  G  + D  G     V    I       L   L ++      +++ + 
Sbjct: 1  MRILGLDFGSKTVGVAVTDPLGYTAQGVE--IIRRDSPNKLRKTLARI----EQLVEQYN 54

Query: 65 PEEAAV 70
           E+  +
Sbjct: 55 IEKIVL 60


>gi|33413562|gb|AAN05712.1| putative Holiday junction resolvase [Lactococcus phage 5440]
          Length = 84

 Score = 34.2 bits (78), Expect = 6.3,   Method: Composition-based stats.
 Identities = 13/87 (14%), Positives = 33/87 (37%), Gaps = 13/87 (14%)

Query: 6  RIIGIDPGLRR-----TGWGIVDVAGDNLCFVSSGTIVS-CVRQSLAFRLCQLYEGLTDV 59
          +I+ ID          TG+      G     +  G+I +   +++   R   +   + D+
Sbjct: 3  KILAIDFSTASKKDEGTGYAF-RKDGQ----LFVGSIKAYNAKKNAWERTFDIVNAIKDI 57

Query: 60 IKNW--RPEEAAVEQVFVNKDAVATLK 84
          I  +  +    A+E   + ++   ++ 
Sbjct: 58 IDEFDLKDYHMAIETPIMGRNKKHSIT 84


>gi|315607913|ref|ZP_07882906.1| YhgF like protein [Prevotella buccae ATCC 33574]
 gi|315250382|gb|EFU30378.1| YhgF like protein [Prevotella buccae ATCC 33574]
          Length = 711

 Score = 34.2 bits (78), Expect = 6.4,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 11/68 (16%)

Query: 6   RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCV---RQSLAFRLCQLYEGLTDVIKN 62
           R++G+DPG R TG  +V + G     +    I         + A R       +  +++N
Sbjct: 316 RVLGVDPGFR-TGCKVVCLDGQG-NLLHHEVIKPHPPVGDVAGAAR------QVLRMVEN 367

Query: 63  WRPEEAAV 70
           +R E  A+
Sbjct: 368 FRLEAVAI 375


>gi|313884922|ref|ZP_07818674.1| Tex-like protein N-terminal domain protein [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312619613|gb|EFR31050.1| Tex-like protein N-terminal domain protein [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 725

 Score = 34.2 bits (78), Expect = 6.4,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 7/66 (10%)

Query: 7   IIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++G DP  R TG    I++  G     ++   I      S A R  Q    L D+I+ ++
Sbjct: 327 VMGFDPAYR-TGCKLAIINETGR---VLTKSVIYPHKPASEAKR-AQAEGQLLDLIQQYQ 381

Query: 65  PEEAAV 70
            +  A+
Sbjct: 382 VDVIAI 387


>gi|298369677|ref|ZP_06980994.1| CRISPR-associated protein, Csn1 family [Neisseria sp. oral taxon
          014 str. F0314]
 gi|298282234|gb|EFI23722.1| CRISPR-associated protein, Csn1 family [Neisseria sp. oral taxon
          014 str. F0314]
          Length = 1089

 Score = 34.2 bits (78), Expect = 6.4,   Method: Composition-based stats.
 Identities = 8/32 (25%), Positives = 17/32 (53%), Gaps = 2/32 (6%)

Query: 7  IIGIDPGLRRTGWGIVDVAG--DNLCFVSSGT 36
          I+G+D G+   GW +V++    + +  +  G 
Sbjct: 12 ILGLDIGIASVGWAMVEIDDKENPVRLIDLGV 43


>gi|298376641|ref|ZP_06986596.1| S1 RNA binding domain protein [Bacteroides sp. 3_1_19]
 gi|298266519|gb|EFI08177.1| S1 RNA binding domain protein [Bacteroides sp. 3_1_19]
          Length = 708

 Score = 34.2 bits (78), Expect = 6.4,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 29/67 (43%), Gaps = 9/67 (13%)

Query: 6   RIIGIDPGLRRTGWGIV--DVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           R++G+DPG R TG  +V  D  G+    + +  I     Q+      +    +  ++  +
Sbjct: 315 RVLGVDPGYR-TGCKLVCLDAQGN---LLHNEAIFPHPPQNEK---GKAAAKVAQLVATY 367

Query: 64  RPEEAAV 70
             +  A+
Sbjct: 368 AIDAIAI 374


>gi|256840817|ref|ZP_05546325.1| RNA-binding protein [Parabacteroides sp. D13]
 gi|256738089|gb|EEU51415.1| RNA-binding protein [Parabacteroides sp. D13]
          Length = 708

 Score = 34.2 bits (78), Expect = 6.4,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 29/67 (43%), Gaps = 9/67 (13%)

Query: 6   RIIGIDPGLRRTGWGIV--DVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           R++G+DPG R TG  +V  D  G+    + +  I     Q+      +    +  ++  +
Sbjct: 315 RVLGVDPGYR-TGCKLVCLDAQGN---LLHNEAIFPHPPQNEK---GKAAAKVAQLVATY 367

Query: 64  RPEEAAV 70
             +  A+
Sbjct: 368 AIDAIAI 374


>gi|238765201|ref|ZP_04626132.1| hypothetical protein ykris0001_45920 [Yersinia kristensenii ATCC
           33638]
 gi|238696584|gb|EEP89370.1| hypothetical protein ykris0001_45920 [Yersinia kristensenii ATCC
           33638]
          Length = 792

 Score = 34.2 bits (78), Expect = 6.4,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 14/72 (19%)

Query: 1   MRKSIRIIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTD 58
           MR ++   G+DPGLR TG    +VD  G     V+  TI     Q+           +  
Sbjct: 325 MRATM---GLDPGLR-TGVKVAVVDATG---KLVAFDTIYPHTGQAAKA-----AAVVAA 372

Query: 59  VIKNWRPEEAAV 70
           +    + E  A+
Sbjct: 373 LCIKHQVELVAI 384


>gi|220931424|ref|YP_002508332.1| Holliday junction resolvase YqgF [Halothermothrix orenii H 168]
 gi|254767518|sp|B8D2B0|RUVX_HALOH RecName: Full=Putative Holliday junction resolvase
 gi|219992734|gb|ACL69337.1| Holliday junction resolvase YqgF [Halothermothrix orenii H 168]
          Length = 140

 Score = 34.2 bits (78), Expect = 6.4,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 15/69 (21%)

Query: 5  IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSG---TIVSCVRQSLAFRLCQLYEGLTDVIK 61
          +RI+G+D G RR G  I     D L   + G    I     + L        E +  +I 
Sbjct: 1  MRIMGLDYGDRRIGVAI----SDKLGMTAQGQEVIIRKTPEEDL--------EVIKGLID 48

Query: 62 NWRPEEAAV 70
           +  EE  V
Sbjct: 49 KYEVEEIIV 57


>gi|326576450|gb|EGE26358.1| RNA binding protein S1 [Moraxella catarrhalis CO72]
          Length = 788

 Score = 34.2 bits (78), Expect = 6.5,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 29/66 (43%), Gaps = 9/66 (13%)

Query: 7   IIGIDPGLRRTGW--GIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           I+G+DPG    G    ++D  G     +++ T+          +L +  + +  +IK  +
Sbjct: 341 ILGVDPGYSH-GVKMAVIDGMG---EVLATDTVYPFK---PHHKLAEAKDRIETLIKTHQ 393

Query: 65  PEEAAV 70
            E  A+
Sbjct: 394 VELVAI 399


>gi|262364253|gb|ACY60810.1| hypothetical protein YPD8_0120 [Yersinia pestis D182038]
          Length = 506

 Score = 34.2 bits (78), Expect = 6.5,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 33/86 (38%), Gaps = 23/86 (26%)

Query: 1   MRKSIRIIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTD 58
           MR ++   G+DPGLR TG    +VD  G     V+  TI     Q+           +  
Sbjct: 40  MRATM---GLDPGLR-TGVKVAVVDATG---KLVAFDTIYPHTGQAAKA-----AAVVAA 87

Query: 59  VIKNWRPEEAAV---------EQVFV 75
           +    + E  A+         E+ FV
Sbjct: 88  LCIKHQVELVAIGNGTASRETERFFV 113


>gi|255013293|ref|ZP_05285419.1| RNA-binding protein [Bacteroides sp. 2_1_7]
          Length = 708

 Score = 34.2 bits (78), Expect = 6.5,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 29/67 (43%), Gaps = 9/67 (13%)

Query: 6   RIIGIDPGLRRTGWGIV--DVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           R++G+DPG R TG  +V  D  G+    + +  I     Q+      +    +  ++  +
Sbjct: 315 RVLGVDPGYR-TGCKLVCLDAQGN---LLHNEAIFPHPPQNEK---GKAAAKVAQLVATY 367

Query: 64  RPEEAAV 70
             +  A+
Sbjct: 368 AIDAIAI 374


>gi|240102087|ref|YP_002958395.1| hypothetical protein TGAM_0029 [Thermococcus gammatolerans EJ3]
 gi|239909640|gb|ACS32531.1| Conserved hypothetical protein [Thermococcus gammatolerans EJ3]
          Length = 668

 Score = 34.2 bits (78), Expect = 6.5,   Method: Composition-based stats.
 Identities = 10/25 (40%), Positives = 16/25 (64%), Gaps = 1/25 (4%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCF 31
           I+GIDPG+   G  ++D+ G+ L  
Sbjct: 246 IVGIDPGIT-VGIAVIDLNGNVLAL 269


>gi|225375409|ref|ZP_03752630.1| hypothetical protein ROSEINA2194_01034 [Roseburia inulinivorans
          DSM 16841]
 gi|225212745|gb|EEG95099.1| hypothetical protein ROSEINA2194_01034 [Roseburia inulinivorans
          DSM 16841]
          Length = 145

 Score = 34.2 bits (78), Expect = 6.5,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 34/82 (41%), Gaps = 17/82 (20%)

Query: 5  IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSG--TIVSCVRQSLAFRLCQLYEGLTDVIKN 62
          +RI+G+D G +  G  +     D L F + G   +       L   L ++     ++IK 
Sbjct: 1  MRILGLDYGSKTVGVAV----SDELLFTAQGLEIVRRQSPNKLRQSLARI----EEIIKE 52

Query: 63 WRPEEAAVEQVFVN--KDAVAT 82
          +      VE++ +   K+   T
Sbjct: 53 YN-----VERIVLGYPKNMNNT 69


>gi|326577921|gb|EGE27785.1| RNA binding protein S1 [Moraxella catarrhalis O35E]
          Length = 788

 Score = 34.2 bits (78), Expect = 6.6,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 29/66 (43%), Gaps = 9/66 (13%)

Query: 7   IIGIDPGLRRTGW--GIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           I+G+DPG    G    ++D  G     +++ T+          +L +  + +  +IK  +
Sbjct: 341 ILGVDPGYSH-GVKMAVIDGMG---EVLATDTVYPFK---PHHKLAEAKDRIETLIKTHQ 393

Query: 65  PEEAAV 70
            E  A+
Sbjct: 394 VELVAI 399


>gi|326561800|gb|EGE12135.1| RNA binding protein S1 [Moraxella catarrhalis 7169]
 gi|326564763|gb|EGE14976.1| RNA binding protein S1 [Moraxella catarrhalis 12P80B1]
 gi|326568974|gb|EGE19043.1| RNA binding protein S1 [Moraxella catarrhalis BC1]
          Length = 788

 Score = 34.2 bits (78), Expect = 6.6,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 29/66 (43%), Gaps = 9/66 (13%)

Query: 7   IIGIDPGLRRTGW--GIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           I+G+DPG    G    ++D  G     +++ T+          +L +  + +  +IK  +
Sbjct: 341 ILGVDPGYSH-GVKMAVIDGMG---EVLATDTVYPFK---PHHKLAEAKDRIETLIKTHQ 393

Query: 65  PEEAAV 70
            E  A+
Sbjct: 394 VELVAI 399


>gi|323139312|ref|ZP_08074365.1| CRISPR-associated protein, Csn1 family [Methylocystis sp. ATCC
          49242]
 gi|322395460|gb|EFX98008.1| CRISPR-associated protein, Csn1 family [Methylocystis sp. ATCC
          49242]
          Length = 1080

 Score = 34.2 bits (78), Expect = 6.6,   Method: Composition-based stats.
 Identities = 6/20 (30%), Positives = 15/20 (75%)

Query: 5  IRIIGIDPGLRRTGWGIVDV 24
          +R++G+D G+   GW ++++
Sbjct: 1  MRVLGLDGGIASIGWALIEI 20


>gi|238758693|ref|ZP_04619867.1| hypothetical protein yaldo0001_31050 [Yersinia aldovae ATCC 35236]
 gi|238702990|gb|EEP95533.1| hypothetical protein yaldo0001_31050 [Yersinia aldovae ATCC 35236]
          Length = 788

 Score = 34.2 bits (78), Expect = 6.6,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 14/72 (19%)

Query: 1   MRKSIRIIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTD 58
           MR ++   G+DPGLR TG    +VD  G     V+  TI     Q+           +  
Sbjct: 325 MRATM---GLDPGLR-TGVKVAVVDATG---KLVAFDTIYPHTGQAAKA-----AAVVAA 372

Query: 59  VIKNWRPEEAAV 70
           +    + E  A+
Sbjct: 373 LCIKHQVELVAI 384


>gi|326563237|gb|EGE13504.1| RNA binding protein S1 [Moraxella catarrhalis 46P47B1]
 gi|326569274|gb|EGE19335.1| RNA binding protein S1 [Moraxella catarrhalis BC7]
 gi|326571951|gb|EGE21956.1| RNA binding protein S1 [Moraxella catarrhalis BC8]
          Length = 788

 Score = 34.2 bits (78), Expect = 6.6,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 29/66 (43%), Gaps = 9/66 (13%)

Query: 7   IIGIDPGLRRTGW--GIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           I+G+DPG    G    ++D  G     +++ T+          +L +  + +  +IK  +
Sbjct: 341 ILGVDPGYSH-GVKMAVIDGMG---EVLATDTVYPFK---PHHKLAEAKDRIETLIKTHQ 393

Query: 65  PEEAAV 70
            E  A+
Sbjct: 394 VELVAI 399


>gi|326562258|gb|EGE12584.1| RNA binding protein S1 [Moraxella catarrhalis 103P14B1]
 gi|326575461|gb|EGE25386.1| RNA binding protein S1 [Moraxella catarrhalis 101P30B1]
          Length = 788

 Score = 34.2 bits (78), Expect = 6.6,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 29/66 (43%), Gaps = 9/66 (13%)

Query: 7   IIGIDPGLRRTGW--GIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           I+G+DPG    G    ++D  G     +++ T+          +L +  + +  +IK  +
Sbjct: 341 ILGVDPGYSH-GVKMAVIDGMG---EVLATDTVYPFK---PHHKLAEAKDRIETLIKTHQ 393

Query: 65  PEEAAV 70
            E  A+
Sbjct: 394 VELVAI 399


>gi|296112291|ref|YP_003626229.1| RNA binding protein S1 [Moraxella catarrhalis RH4]
 gi|295919984|gb|ADG60335.1| RNA binding protein S1 [Moraxella catarrhalis RH4]
          Length = 788

 Score = 34.2 bits (78), Expect = 6.6,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 29/66 (43%), Gaps = 9/66 (13%)

Query: 7   IIGIDPGLRRTGW--GIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           I+G+DPG    G    ++D  G     +++ T+          +L +  + +  +IK  +
Sbjct: 341 ILGVDPGYSH-GVKMAVIDGMG---EVLATDTVYPFK---PHHKLAEAKDRIETLIKTHQ 393

Query: 65  PEEAAV 70
            E  A+
Sbjct: 394 VELVAI 399


>gi|213963251|ref|ZP_03391508.1| conserved hypothetical protein [Capnocytophaga sputigena Capno]
 gi|213954113|gb|EEB65438.1| conserved hypothetical protein [Capnocytophaga sputigena Capno]
          Length = 136

 Score = 34.2 bits (78), Expect = 6.6,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 6/38 (15%)

Query: 5  IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSG--TIVSC 40
          +RI+ ID G +RTG  + D     L  ++SG  T+ + 
Sbjct: 1  MRILAIDYGTKRTGIAVTD----PLQIIASGLCTVETP 34


>gi|253699853|ref|YP_003021042.1| RNA binding S1 domain protein [Geobacter sp. M21]
 gi|251774703|gb|ACT17284.1| RNA binding S1 domain protein [Geobacter sp. M21]
          Length = 756

 Score = 34.2 bits (78), Expect = 6.6,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 3/31 (9%)

Query: 4   SIRIIGIDPGLRRTG--WGIVDVAGDNLCFV 32
             R++GIDPGLR TG     +   G  L  V
Sbjct: 323 GRRVLGIDPGLR-TGCKLAAISETGRFLEHV 352


>gi|311104858|ref|YP_003977711.1| protein tex [Achromobacter xylosoxidans A8]
 gi|310759547|gb|ADP14996.1| protein tex [Achromobacter xylosoxidans A8]
          Length = 791

 Score = 34.2 bits (78), Expect = 6.7,   Method: Composition-based stats.
 Identities = 12/69 (17%), Positives = 26/69 (37%), Gaps = 15/69 (21%)

Query: 7   IIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLA---FRLCQLYEGLTDVIK 61
           ++G+DPG+R TG    ++D  G          + +           R   +   L  ++ 
Sbjct: 346 VLGLDPGIR-TGCKVAVIDQTGK--------VVDTTTVYPFEPRRDREGTI-NTLAALVA 395

Query: 62  NWRPEEAAV 70
             + +  A+
Sbjct: 396 RHKVDLIAI 404


>gi|269121668|ref|YP_003309845.1| glucokinase, ROK family [Sebaldella termitidis ATCC 33386]
 gi|268615546|gb|ACZ09914.1| glucokinase, ROK family [Sebaldella termitidis ATCC 33386]
          Length = 314

 Score = 34.2 bits (78), Expect = 6.8,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 3/58 (5%)

Query: 9  GIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
          GID G   T  G+VD  G+ +      TI +         L ++ + L + +K +   
Sbjct: 6  GIDLGGTNTKIGVVDKEGNKIFTT---TIKTESIDGYEISLNRIADILKENLKEYEIT 60


>gi|197119399|ref|YP_002139826.1| S1 RNA-binding domain-containing transcriptional accessory protein
           [Geobacter bemidjiensis Bem]
 gi|197088759|gb|ACH40030.1| S1 RNA-binding domain-containing transcriptional accessory protein
           [Geobacter bemidjiensis Bem]
          Length = 754

 Score = 34.2 bits (78), Expect = 6.8,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 3/31 (9%)

Query: 4   SIRIIGIDPGLRRTG--WGIVDVAGDNLCFV 32
             R++GIDPGLR TG     +   G  L  V
Sbjct: 321 GRRVLGIDPGLR-TGCKLAAISETGRFLEHV 350


>gi|298504349|gb|ADI83072.1| S1 RNA-binding domain-containing transcriptional accessory protein
           [Geobacter sulfurreducens KN400]
          Length = 761

 Score = 34.2 bits (78), Expect = 6.9,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 8/67 (11%)

Query: 6   RIIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           R++G+DPGLR TG     VD  G  L  V   TI          ++         +++  
Sbjct: 325 RVLGVDPGLR-TGSKLAAVDGTGRFLEHV---TIYPHAGGE--GKVAAAKREFLRLVECH 378

Query: 64  RPEEAAV 70
             E  AV
Sbjct: 379 GIEMVAV 385


>gi|39995345|ref|NP_951296.1| S1 RNA-binding domain-containing protein [Geobacter sulfurreducens
           PCA]
 gi|39982107|gb|AAR33569.1| S1 RNA binding domain protein [Geobacter sulfurreducens PCA]
          Length = 761

 Score = 34.2 bits (78), Expect = 6.9,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 8/67 (11%)

Query: 6   RIIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
           R++G+DPGLR TG     VD  G  L  V   TI          ++         +++  
Sbjct: 325 RVLGVDPGLR-TGSKLAAVDGTGRFLEHV---TIYPHAGGE--GKVAAAKREFLRLVECH 378

Query: 64  RPEEAAV 70
             E  AV
Sbjct: 379 GIEMVAV 385


>gi|300173207|ref|YP_003772373.1| transcription accessory protein [Leuconostoc gasicomitatum LMG
           18811]
 gi|299887586|emb|CBL91554.1| transcription accessory protein [Leuconostoc gasicomitatum LMG
           18811]
          Length = 731

 Score = 34.2 bits (78), Expect = 6.9,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 14/77 (18%)

Query: 1   MRKSIR---IIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFR--LCQLY 53
           M+  ++   ++G DPG R TG    IVD  G    F+    I      +   R    +++
Sbjct: 321 MQAPLKEKIVMGFDPGFR-TGSKLAIVDGNG---EFLKKQVIYPHKPANAQQRHEAGEIF 376

Query: 54  EGLTDVIKNWRPEEAAV 70
           E L   I  +  +  A+
Sbjct: 377 ESL---IHEFDVQLVAI 390


>gi|326791231|ref|YP_004309052.1| Holliday junction resolvase [Clostridium lentocellum DSM 5427]
 gi|326541995|gb|ADZ83854.1| Holliday junction resolvase [Clostridium lentocellum DSM 5427]
          Length = 139

 Score = 34.2 bits (78), Expect = 6.9,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 34/82 (41%), Gaps = 13/82 (15%)

Query: 5  IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
          +RI+G+D G + TG  I D  G     +    I     + L   + ++     ++   ++
Sbjct: 1  MRILGLDFGTKTTGVAISDPMGWTAQGLE--IIRRQEDEHLKATMKRI----EEICTAYK 54

Query: 65 PEEAAVEQVFVN--KDAVATLK 84
               VE++ +   K+   TL 
Sbjct: 55 -----VEKIVLGLPKNMNNTLG 71


>gi|288924888|ref|ZP_06418824.1| S1 RNA binding domain protein [Prevotella buccae D17]
 gi|288338078|gb|EFC76428.1| S1 RNA binding domain protein [Prevotella buccae D17]
          Length = 720

 Score = 34.2 bits (78), Expect = 6.9,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 11/68 (16%)

Query: 6   RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCV---RQSLAFRLCQLYEGLTDVIKN 62
           R++G+DPG R TG  +V + G     +    I         + A R       +  +++N
Sbjct: 325 RVLGVDPGFR-TGCKVVCLDGQG-NLLHHEVIKPHPPVGDVAGAAR------QVLRMVEN 376

Query: 63  WRPEEAAV 70
           +R E  A+
Sbjct: 377 FRLEAVAI 384


>gi|327538498|gb|EGF25162.1| transcriptional accessory protein [Rhodopirellula baltica WH47]
          Length = 711

 Score = 34.2 bits (78), Expect = 7.0,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 12/69 (17%)

Query: 6   RI-IGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIV-SCVRQSLAFRLCQLYEGLTDVIK 61
           R+ IGIDPG R TG    +VD  G    F+++ TI  +  +   A       + L  +I+
Sbjct: 314 RVTIGIDPGFR-TGCKVAVVDGTG---KFLANTTIYPTPPKSDTAGA----SKQLLALIQ 365

Query: 62  NWRPEEAAV 70
               E  A+
Sbjct: 366 KHNVELIAI 374


>gi|284028353|ref|YP_003378284.1| RNA binding S1 domain-containing protein [Kribbella flavida DSM
           17836]
 gi|283807646|gb|ADB29485.1| RNA binding S1 domain protein [Kribbella flavida DSM 17836]
          Length = 815

 Score = 34.2 bits (78), Expect = 7.0,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 9/65 (13%)

Query: 8   IGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           +G+DPG R TG    +VD  G     V++G I   V Q+       + + L  +    + 
Sbjct: 330 MGLDPGFR-TGVKVAVVDATG---KVVATGVIYPHVPQNQWD--KSIAQ-LAALCAAHQV 382

Query: 66  EEAAV 70
           +  A+
Sbjct: 383 DLIAI 387


>gi|326335222|ref|ZP_08201418.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
          [Capnocytophaga sp. oral taxon 338 str. F0234]
 gi|325692630|gb|EGD34573.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
          [Capnocytophaga sp. oral taxon 338 str. F0234]
          Length = 148

 Score = 34.2 bits (78), Expect = 7.0,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 7/61 (11%)

Query: 2  RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSS--GTIVSCVRQSLAFRLCQLYEGLTDV 59
          +  +RI+ ID G +R G  + D     L  ++S   T+ +        + CQ  E +  +
Sbjct: 11 KAQMRILAIDYGTKRCGIAVTD----ELKLIASALATVETTELLDFLQQYCQ-SESVERI 65

Query: 60 I 60
          I
Sbjct: 66 I 66


>gi|291548156|emb|CBL21264.1| conserved hypothetical protein TIGR00250 [Ruminococcus sp. SR1/5]
          Length = 150

 Score = 34.2 bits (78), Expect = 7.0,   Method: Composition-based stats.
 Identities = 11/66 (16%), Positives = 31/66 (46%), Gaps = 6/66 (9%)

Query: 5  IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
          +R++G+D G +  G  + D  G     +++  + +  R+    +L +    + ++I  ++
Sbjct: 1  MRVLGLDYGSKTVGVAVSDPLG-----LTAQGVETVWRK-QENKLRRTLARIEEIISEYQ 54

Query: 65 PEEAAV 70
            E  +
Sbjct: 55 VTEIVL 60


>gi|291165086|gb|ADD81113.1| gp08 [Rhodococcus phage ReqiPine5]
          Length = 223

 Score = 34.2 bits (78), Expect = 7.0,   Method: Composition-based stats.
 Identities = 27/165 (16%), Positives = 53/165 (32%), Gaps = 25/165 (15%)

Query: 7   IIGIDPGLRRTGWGIV-----DVAGDNLCFVSSGTIVSCVRQ----------SLAFRLCQ 51
           ++GIDP L      ++        GD +  ++  T  +  ++              R+  
Sbjct: 7   VVGIDPSLTGCAVAVLPRRAAREFGDPILHLTK-TRATPAKKGAPKVEPSWADRQRRILY 65

Query: 52  LYEGLTDVIKNWRPEEAA-VEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNT 110
           +   +  V+    PE    +E    + +  +     +     +         V    PN 
Sbjct: 66  VARQVLAVV---PPEATVFIEAPAYSSNMGSAFDRYRLWEQIVERLQRQYCTVVPVLPNH 122

Query: 111 IKKAVIGVGHGDKKQIHMMLKMLMPESFF----KGKD-AADALAI 150
                 GVG+  K+ +   +    P        K  D  ADA+A+
Sbjct: 123 RAMWATGVGNPSKEDVIRNIAAKFPTLDITWRGKADDNLADAVAL 167


>gi|254804356|ref|YP_003082577.1| putative CRISPR-associated protein [Neisseria meningitidis
          alpha14]
 gi|254667898|emb|CBA04028.1| putative CRISPR-associated protein [Neisseria meningitidis
          alpha14]
          Length = 1082

 Score = 34.2 bits (78), Expect = 7.1,   Method: Composition-based stats.
 Identities = 8/32 (25%), Positives = 16/32 (50%), Gaps = 2/32 (6%)

Query: 7  IIGIDPGLRRTGWGI--VDVAGDNLCFVSSGT 36
          I+G+D G+   GW +  +D   + +  +  G 
Sbjct: 12 ILGLDIGIASVGWAMVEIDEEENPIRLIDLGV 43


>gi|241759613|ref|ZP_04757714.1| CRISPR-associated protein, Csn1 family [Neisseria flavescens
          SK114]
 gi|241319985|gb|EER56366.1| CRISPR-associated protein, Csn1 family [Neisseria flavescens
          SK114]
          Length = 1081

 Score = 34.2 bits (78), Expect = 7.1,   Method: Composition-based stats.
 Identities = 8/32 (25%), Positives = 16/32 (50%), Gaps = 2/32 (6%)

Query: 7  IIGIDPGLRRTGWGI--VDVAGDNLCFVSSGT 36
          I+G+D G+   GW +  +D   + +  +  G 
Sbjct: 12 ILGLDIGIASVGWAMVEIDEEENPIRLIDLGV 43


>gi|295109588|emb|CBL23541.1| conserved hypothetical protein TIGR00250 [Ruminococcus obeum
          A2-162]
          Length = 140

 Score = 34.2 bits (78), Expect = 7.2,   Method: Composition-based stats.
 Identities = 16/82 (19%), Positives = 36/82 (43%), Gaps = 13/82 (15%)

Query: 5  IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
          +RI+G+D G +  G  + D  G     +++  + +  R+    +L Q    + ++I  + 
Sbjct: 1  MRILGLDYGSKTVGVAVSDPLG-----LTAQKVETIWRK-QENKLRQTLARIEELIAEYE 54

Query: 65 PEEAAVEQVF--VNKDAVATLK 84
               VE++     K+   T+ 
Sbjct: 55 -----VEKIVLGFPKNMNNTVG 71


>gi|293374256|ref|ZP_06620584.1| RNAse YqgF [Turicibacter sanguinis PC909]
 gi|325844837|ref|ZP_08168289.1| RNAse H domain protein, YqgF family [Turicibacter sp. HGF1]
 gi|292647089|gb|EFF65071.1| RNAse YqgF [Turicibacter sanguinis PC909]
 gi|325489024|gb|EGC91412.1| RNAse H domain protein, YqgF family [Turicibacter sp. HGF1]
          Length = 143

 Score = 34.2 bits (78), Expect = 7.2,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 4/32 (12%)

Query: 5  IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGT 36
          ++I+G+D G R  G  I D  G     ++ G 
Sbjct: 1  MKILGLDLGTRTCGIAISDALG----MMAHGV 28


>gi|225869409|ref|YP_002745357.1| Holliday junction resolvase [Streptococcus equi subsp.
          zooepidemicus]
 gi|259495714|sp|C0MGB3|RUVX_STRS7 RecName: Full=Putative Holliday junction resolvase
 gi|225702685|emb|CAX00789.1| putative Holliday junction resolvase [Streptococcus equi subsp.
          zooepidemicus]
          Length = 139

 Score = 34.2 bits (78), Expect = 7.2,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 9/67 (13%)

Query: 5  IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCV-RQSLAFRLCQLYEGLTDVIKNW 63
          +RI+G+D G +  G  I D  G     +    I     +Q         ++ L +++K +
Sbjct: 1  MRIMGLDVGSKTVGVAISDPLGFTAQGLE--IIKINEDKQDFG------FDRLAELVKQY 52

Query: 64 RPEEAAV 70
          + +   +
Sbjct: 53 QVDRFVI 59


>gi|88703318|ref|ZP_01101034.1| S1 RNA binding domain protein [Congregibacter litoralis KT71]
 gi|88702032|gb|EAQ99135.1| S1 RNA binding domain protein [Congregibacter litoralis KT71]
          Length = 792

 Score = 34.2 bits (78), Expect = 7.2,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 9/65 (13%)

Query: 8   IGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           +G+DPGLR TG    +VD  G     V  GTI          +  +    L  +I+    
Sbjct: 328 MGLDPGLR-TGVKVAVVDATG---KLVDQGTIYP---TPPQNKTREAAATLMTMIRRHSV 380

Query: 66  EEAAV 70
           E  ++
Sbjct: 381 ELISI 385


>gi|329120926|ref|ZP_08249558.1| hypothetical protein HMPREF9083_0019 [Dialister micraerophilus DSM
           19965]
 gi|327471385|gb|EGF16836.1| hypothetical protein HMPREF9083_0019 [Dialister micraerophilus DSM
           19965]
          Length = 54

 Score = 34.2 bits (78), Expect = 7.3,   Method: Composition-based stats.
 Identities = 7/23 (30%), Positives = 12/23 (52%)

Query: 116 IGVGHGDKKQIHMMLKMLMPESF 138
           +G G  +KKQ+  M+  +M    
Sbjct: 2   VGYGRAEKKQVIEMIMQIMNIKK 24


>gi|255019785|ref|ZP_05291861.1| hypothetical protein ACA_0157 [Acidithiobacillus caldus ATCC 51756]
 gi|254970714|gb|EET28200.1| hypothetical protein ACA_0157 [Acidithiobacillus caldus ATCC 51756]
          Length = 442

 Score = 34.2 bits (78), Expect = 7.3,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 6/83 (7%)

Query: 23  DVAGDNLCFVSSGTI-VSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVN--KDA 79
           +  G  +       +  + +R  L  RL  L      V+    PE+ A+   F    ++A
Sbjct: 169 EKTGGRIRAREVQVLSRADLRADLPARLHGLGGQACVVVDAEVPEDLAI---FARAVREA 225

Query: 80  VATLKLGQARAIAILSPALARIP 102
            A  K    R+ A L  ALA +P
Sbjct: 226 TAAGKRFLFRSAASLLTALADLP 248


>gi|293604133|ref|ZP_06686541.1| YhgF like protein [Achromobacter piechaudii ATCC 43553]
 gi|292817358|gb|EFF76431.1| YhgF like protein [Achromobacter piechaudii ATCC 43553]
          Length = 792

 Score = 34.2 bits (78), Expect = 7.4,   Method: Composition-based stats.
 Identities = 12/69 (17%), Positives = 26/69 (37%), Gaps = 15/69 (21%)

Query: 7   IIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLA---FRLCQLYEGLTDVIK 61
           ++G+DPG+R TG    ++D  G          + +           R   +   L  ++ 
Sbjct: 346 VLGLDPGIR-TGCKIAVIDQTGK--------VVDTTTVYPFEPRRDRDGTI-NTLAALVA 395

Query: 62  NWRPEEAAV 70
             + +  A+
Sbjct: 396 RHKVDLIAI 404


>gi|291276265|ref|YP_003516037.1| CRISPR associated protein [Helicobacter mustelae 12198]
 gi|290963459|emb|CBG39289.1| Putative CRISPR associated protein [Helicobacter mustelae 12198]
          Length = 1024

 Score = 34.2 bits (78), Expect = 7.4,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 6/46 (13%)

Query: 5  IRIIGIDPGLRRTGWGIVDVAGD-----NLCFVSSGT-IVSCVRQS 44
          IR +GID G+   GW +++         N   V+SG  + +     
Sbjct: 2  IRTLGIDIGIASIGWAVIEGEYTDKGLENKEIVASGVRVFTKAENP 47


>gi|167767372|ref|ZP_02439425.1| hypothetical protein CLOSS21_01891 [Clostridium sp. SS2/1]
 gi|167711347|gb|EDS21926.1| hypothetical protein CLOSS21_01891 [Clostridium sp. SS2/1]
          Length = 139

 Score = 33.8 bits (77), Expect = 7.5,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 38/81 (46%), Gaps = 13/81 (16%)

Query: 6  RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
          RI+G+D G +  G  + D        +++  + +  R+  A +L + Y  + +++K +  
Sbjct: 3  RILGLDYGTKTVGVALSDE-----LHITAQPLETITRKD-ANKLRKTYARIEELVKEYN- 55

Query: 66 EEAAVEQVFVN--KDAVATLK 84
              VE++ +   K+   T+ 
Sbjct: 56 ----VEKIVLGLPKNMNNTVG 72


>gi|312897937|ref|ZP_07757350.1| S1 RNA binding domain protein [Megasphaera micronuciformis F0359]
 gi|310620971|gb|EFQ04518.1| S1 RNA binding domain protein [Megasphaera micronuciformis F0359]
          Length = 724

 Score = 33.8 bits (77), Expect = 7.6,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 15/69 (21%)

Query: 7   IIGIDPGLRRTGW--GIVDVAGDNLCFVSSGTIVSC---VRQSLAFRLCQLYEGLTDVIK 61
           I+G+DPG R TG    ++D  G+    +  GT +      ++SLA       + LT  IK
Sbjct: 318 ILGLDPGYR-TGCKAAVIDPTGN---VLDYGTCMLTGSEKQKSLA------ADTLTRFIK 367

Query: 62  NWRPEEAAV 70
            +     ++
Sbjct: 368 TYGVNLISI 376


>gi|251783469|ref|YP_002997774.1| Holliday junction resolvase-like protein [Streptococcus
          dysgalactiae subsp. equisimilis GGS_124]
 gi|242392101|dbj|BAH82560.1| Holliday junction resolvase-like protein [Streptococcus
          dysgalactiae subsp. equisimilis GGS_124]
 gi|322412847|gb|EFY03755.1| Holliday junction resolvase-like protein [Streptococcus
          dysgalactiae subsp. dysgalactiae ATCC 27957]
 gi|323128215|gb|ADX25512.1| Holliday junction resolvase-like protein [Streptococcus
          dysgalactiae subsp. equisimilis ATCC 12394]
          Length = 139

 Score = 33.8 bits (77), Expect = 7.7,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 29/67 (43%), Gaps = 9/67 (13%)

Query: 5  IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSC-VRQSLAFRLCQLYEGLTDVIKNW 63
          +RI+G+D G +  G  I D  G     +    I     ++         +E L +++K +
Sbjct: 1  MRIMGLDVGSKTVGVAISDPLGFTAQGLE--IIKIDEEKEEFG------FERLGELVKQY 52

Query: 64 RPEEAAV 70
          + ++  V
Sbjct: 53 QVDQFVV 59


>gi|160940886|ref|ZP_02088226.1| hypothetical protein CLOBOL_05778 [Clostridium bolteae ATCC
          BAA-613]
 gi|158436130|gb|EDP13897.1| hypothetical protein CLOBOL_05778 [Clostridium bolteae ATCC
          BAA-613]
          Length = 171

 Score = 33.8 bits (77), Expect = 7.7,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 31/67 (46%), Gaps = 6/67 (8%)

Query: 4  SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
          ++RI+G+D G +  G  + D  G     +++ T+ +  R S   ++ Q    +  +I  +
Sbjct: 30 NMRIMGLDFGSKTVGVAVCDPLG-----ITAQTVETITRAS-ENKMRQTLARIEQLIGEY 83

Query: 64 RPEEAAV 70
            E   +
Sbjct: 84 EIERIVL 90


>gi|241166280|ref|XP_002409833.1| protein tex, putative [Ixodes scapularis]
 gi|215494654|gb|EEC04295.1| protein tex, putative [Ixodes scapularis]
          Length = 616

 Score = 33.8 bits (77), Expect = 7.8,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 9/66 (13%)

Query: 7   IIGIDPGLRRTGW--GIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           ++G+DPG+R TG    ++D  G  L      T      +    R   +   L  +   ++
Sbjct: 68  VLGLDPGIR-TGVKAAVIDATGKVL-----DTATVYPFEPRRDREGAI-RTLAGLATRYQ 120

Query: 65  PEEAAV 70
            E  A+
Sbjct: 121 VELVAI 126


>gi|309775358|ref|ZP_07670363.1| putative Holliday junction resolvase [Erysipelotrichaceae
          bacterium 3_1_53]
 gi|308916875|gb|EFP62610.1| putative Holliday junction resolvase [Erysipelotrichaceae
          bacterium 3_1_53]
          Length = 137

 Score = 33.8 bits (77), Expect = 7.9,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 7/66 (10%)

Query: 5  IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
          +RI+G+D G +  G  + D  G     V   TI        A      +E +   IK ++
Sbjct: 1  MRILGLDLGSKTLGVSVSDALGMIARPVE--TIRFESDDYDAA-----FEQVQKYIKEFQ 53

Query: 65 PEEAAV 70
             A +
Sbjct: 54 VTTAVL 59


>gi|170017311|ref|YP_001728230.1| transcriptional accessory protein [Leuconostoc citreum KM20]
 gi|169804168|gb|ACA82786.1| Transcriptional accessory protein [Leuconostoc citreum KM20]
          Length = 733

 Score = 33.8 bits (77), Expect = 8.0,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 35/94 (37%), Gaps = 18/94 (19%)

Query: 1   MRKSIR---IIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEG 55
           M+  ++   ++G DPG R TG    I+D  G    F+    I      S   R  +  + 
Sbjct: 324 MQAPLKNKIVMGFDPGFR-TGSKLAIIDANGR---FLKKEVIYPHKPASEKQR-QEAAKR 378

Query: 56  LTDVIKNWRPEEAAV-------E-QVFVNKDAVA 81
              +I  +     A+       E Q FV  +  +
Sbjct: 379 FQSLIHEFDVALVAIGNGTASRESQEFVANNLPS 412


>gi|327313650|ref|YP_004329087.1| CobW/P47K family protein [Prevotella denticola F0289]
 gi|326946222|gb|AEA22107.1| CobW/P47K family protein [Prevotella denticola F0289]
          Length = 402

 Score = 33.8 bits (77), Expect = 8.1,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 19/33 (57%)

Query: 20 GIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQL 52
          G+VD  GD+L  + +G I   ++  L  +L ++
Sbjct: 56 GVVDQKGDSLVALQNGCICCTLKMDLVQQLNEI 88


>gi|313902420|ref|ZP_07835823.1| aminomethyltransferase [Thermaerobacter subterraneus DSM 13965]
 gi|313467351|gb|EFR62862.1| aminomethyltransferase [Thermaerobacter subterraneus DSM 13965]
          Length = 372

 Score = 33.8 bits (77), Expect = 8.2,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 22/35 (62%)

Query: 12  PGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLA 46
           PG+ RTG+ ++D  G  +  V+SGT+   +  SLA
Sbjct: 298 PGVARTGYPVLDDEGREVGRVTSGTVAPTLGASLA 332


>gi|268316020|ref|YP_003289739.1| Glycosyltransferase 28 domain-containing protein [Rhodothermus
           marinus DSM 4252]
 gi|262333554|gb|ACY47351.1| Glycosyltransferase 28 domain protein [Rhodothermus marinus DSM
           4252]
          Length = 377

 Score = 33.8 bits (77), Expect = 8.2,   Method: Composition-based stats.
 Identities = 12/86 (13%), Positives = 26/86 (30%), Gaps = 20/86 (23%)

Query: 26  GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKL 85
           G+ +  ++           +  RL  L + LT+ + ++RP        F           
Sbjct: 64  GNRMRLLA----TLRANLPVMRRLRPLLDELTEKLADFRPHLVI--TDFEALTPR----- 112

Query: 86  GQARAIAILSPALARIPVSEYAPNTI 111
                    + A   +PV  +    +
Sbjct: 113 ---------AAARLGLPVLSFNHQQV 129


>gi|312958364|ref|ZP_07772885.1| S1 RNA binding domain protein [Pseudomonas fluorescens WH6]
 gi|311287428|gb|EFQ65988.1| S1 RNA binding domain protein [Pseudomonas fluorescens WH6]
          Length = 774

 Score = 33.8 bits (77), Expect = 8.3,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 9/65 (13%)

Query: 8   IGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           +G+DPGLR TG    +VD  G     +   T+   V  +   +   +   L  +      
Sbjct: 326 LGLDPGLR-TGCKVAVVDATG---KLLDHATVYPHVPHNKWDQTLAI---LAALCAKHSV 378

Query: 66  EEAAV 70
           +  A+
Sbjct: 379 DLIAI 383


>gi|238754100|ref|ZP_04615458.1| hypothetical protein yruck0001_27010 [Yersinia ruckeri ATCC 29473]
 gi|238707596|gb|EEP99955.1| hypothetical protein yruck0001_27010 [Yersinia ruckeri ATCC 29473]
          Length = 782

 Score = 33.8 bits (77), Expect = 8.3,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 9/45 (20%)

Query: 1   MRKSIRIIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQ 43
           MR ++   G+DPGLR TG    +VD  G     V+  T+     Q
Sbjct: 325 MRATM---GLDPGLR-TGVKVAVVDSTG---KLVAYDTVYPHTGQ 362


>gi|126668407|ref|ZP_01739364.1| hypothetical protein MELB17_14738 [Marinobacter sp. ELB17]
 gi|126627116|gb|EAZ97756.1| hypothetical protein MELB17_14738 [Marinobacter sp. ELB17]
          Length = 447

 Score = 33.8 bits (77), Expect = 8.3,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 1/32 (3%)

Query: 2  RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVS 33
           + +RI  IDPG + TG  +V   G     ++
Sbjct: 50 TQPLRI-KIDPGSKATGIAVVRENGQKQHVLA 80


>gi|332885146|gb|EGK05397.1| hypothetical protein HMPREF9456_02598 [Dysgonomonas mossii DSM
          22836]
          Length = 320

 Score = 33.8 bits (77), Expect = 8.6,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 8  IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
          IGID G   + +G+VD  G     ++ G+I +   + +   +  L  G+ ++I  
Sbjct: 7  IGIDIGGTNSVFGVVDKRG---HIINQGSIKTGAYKEINEYVTNLSAGVQEIIDQ 58


>gi|288906372|ref|YP_003431594.1| hypothetical protein GALLO_2188 [Streptococcus gallolyticus
          UCN34]
 gi|306832418|ref|ZP_07465571.1| crossover junction endodeoxyribonuclease [Streptococcus
          gallolyticus subsp. gallolyticus TX20005]
 gi|325979385|ref|YP_004289101.1| putative holliday junction resolvase [Streptococcus gallolyticus
          subsp. gallolyticus ATCC BAA-2069]
 gi|288733098|emb|CBI14679.1| Conserved hypothetical protein [Streptococcus gallolyticus UCN34]
 gi|304425458|gb|EFM28577.1| crossover junction endodeoxyribonuclease [Streptococcus
          gallolyticus subsp. gallolyticus TX20005]
 gi|325179313|emb|CBZ49357.1| putative holliday junction resolvase [Streptococcus gallolyticus
          subsp. gallolyticus ATCC BAA-2069]
          Length = 139

 Score = 33.8 bits (77), Expect = 8.6,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 31/66 (46%), Gaps = 7/66 (10%)

Query: 5  IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
          +RI+G+D G +  G  I     D L F + G  +  + +         +E L +++K ++
Sbjct: 1  MRIMGLDVGSKTVGVAI----SDPLGFTAQGVEIIRIDEEAGE---FGFERLEELVKQYK 53

Query: 65 PEEAAV 70
           ++  V
Sbjct: 54 VDKFVV 59


>gi|238792873|ref|ZP_04636503.1| hypothetical protein yinte0001_35270 [Yersinia intermedia ATCC
           29909]
 gi|238727727|gb|EEQ19251.1| hypothetical protein yinte0001_35270 [Yersinia intermedia ATCC
           29909]
          Length = 792

 Score = 33.8 bits (77), Expect = 8.6,   Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 9/45 (20%)

Query: 1   MRKSIRIIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQ 43
           MR ++   G+DPGLR TG    IVD  G     V+  TI     Q
Sbjct: 325 MRATM---GLDPGLR-TGVKVAIVDATG---KLVAFDTIYPHTGQ 362


>gi|296875599|ref|ZP_06899670.1| crossover junction endodeoxyribonuclease [Streptococcus
           parasanguinis ATCC 15912]
 gi|296433396|gb|EFH19172.1| crossover junction endodeoxyribonuclease [Streptococcus
           parasanguinis ATCC 15912]
          Length = 139

 Score = 33.8 bits (77), Expect = 8.7,   Method: Composition-based stats.
 Identities = 16/99 (16%), Positives = 39/99 (39%), Gaps = 8/99 (8%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
           +RI+G+D G +  G  + D  G     +    I    ++    RL        +++  ++
Sbjct: 1   MRIMGLDVGSKTVGVAVSDPLGFTAQGLEIIQIDEDKKEFGLERL-------AELVAQYK 53

Query: 65  PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPV 103
            +   V  +  N +  +  ++  ++A   +      +PV
Sbjct: 54  VDRFVV-GLPKNMNNTSGPRVEASQAYGTMIAEKFGLPV 91


>gi|320007277|gb|ADW02127.1| Tex-like protein [Streptomyces flavogriseus ATCC 33331]
          Length = 808

 Score = 33.8 bits (77), Expect = 8.7,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 11/66 (16%)

Query: 8   IGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFR-LCQLYEGLTDVIKNWR 64
           +G+DPG R TG    +VD  G     V++  I   V  +   R L      L  + K   
Sbjct: 328 LGLDPGFR-TGVKVAVVDATG---KVVATDVIHPHVPANQWDRSLAT----LERLAKEHH 379

Query: 65  PEEAAV 70
            +  A+
Sbjct: 380 VDLIAI 385


>gi|32266975|ref|NP_861007.1| hypothetical protein HH1476 [Helicobacter hepaticus ATCC 51449]
 gi|32263027|gb|AAP78073.1| conserved hypothetical protein [Helicobacter hepaticus ATCC
          51449]
          Length = 131

 Score = 33.8 bits (77), Expect = 8.7,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 15/41 (36%), Gaps = 5/41 (12%)

Query: 5  IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGT-IVSCVRQS 44
          +RI+G D G+   GW  V+           G  I +     
Sbjct: 1  MRILGFDIGITSIGWAYVESN----ELKDCGVRIFTKAENP 37


>gi|84386346|ref|ZP_00989374.1| hypothetical protein V12B01_02515 [Vibrio splendidus 12B01]
 gi|84378770|gb|EAP95625.1| hypothetical protein V12B01_02515 [Vibrio splendidus 12B01]
          Length = 776

 Score = 33.8 bits (77), Expect = 8.7,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 9/65 (13%)

Query: 8   IGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           +G+DPGLR TG    +VD  G     +++ TI     Q    +   +   +  +++ +  
Sbjct: 329 LGLDPGLR-TGSKIAVVDSTG---KVLATETIYPHPPQKQYDKSAHV---VEQMVRQYNV 381

Query: 66  EEAAV 70
           +  A+
Sbjct: 382 DLIAI 386


>gi|23016417|ref|ZP_00056173.1| hypothetical protein Magn03010869 [Magnetospirillum magnetotacticum
           MS-1]
          Length = 155

 Score = 33.8 bits (77), Expect = 8.9,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 49/152 (32%), Gaps = 20/152 (13%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRL---CQLYEGLTDVIKNW 63
           I+ +D G   TGW +          ++ G IVS   +    R       +      + + 
Sbjct: 4   ILALDLGST-TGWAM---------RLADGIIVSGTMEFRPGRFEGGGMRFLRFRSWLDHL 53

Query: 64  RPEEAAVEQVFVNKDAVATLK-LGQARA--IAILSP--ALARIPVSEYAPNTIKKAVIGV 118
                 +  V+  +                +A L+    L  IP       TIK+   G 
Sbjct: 54  EAGAKGIGTVYFEEVRRHAGTDAAHLYGGFVAHLAAWCELKHIPYQGVPVGTIKRHATGK 113

Query: 119 GHGDKKQIHMMLKMLMPESFFKGKDAADALAI 150
            +  K  +   ++        +  + ADALAI
Sbjct: 114 SNAGKDAVIAAMRS--RGFNPEDDNEADALAI 143


>gi|327398201|ref|YP_004339070.1| Holliday junction resolvase [Hippea maritima DSM 10411]
 gi|327180830|gb|AEA33011.1| Holliday junction resolvase [Hippea maritima DSM 10411]
          Length = 136

 Score = 33.8 bits (77), Expect = 9.0,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 5  IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSC 40
          +RI+GID G ++ G  I D        +  G I + 
Sbjct: 1  MRILGIDYGTKKIGIAISDETNT--IALPHGVIDTD 34


>gi|296241938|ref|YP_003649425.1| hypothetical protein Tagg_0193 [Thermosphaera aggregans DSM 11486]
 gi|296094522|gb|ADG90473.1| Protein of unknown function DUF460 [Thermosphaera aggregans DSM
           11486]
          Length = 643

 Score = 33.8 bits (77), Expect = 9.0,   Method: Composition-based stats.
 Identities = 9/21 (42%), Positives = 14/21 (66%), Gaps = 1/21 (4%)

Query: 7   IIGIDPGLRRTGWGIVDVAGD 27
           I+GIDPG+   G  ++D+ G 
Sbjct: 242 IMGIDPGMT-VGVALIDLEGR 261


>gi|227329718|ref|ZP_03833742.1| putative RNA binding protein [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 777

 Score = 33.8 bits (77), Expect = 9.0,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 14/72 (19%)

Query: 1   MRKSIRIIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTD 58
           MR ++   G+DPGLR TG    +VD  G     V++ TI     Q  A +   +   +  
Sbjct: 325 MRATM---GLDPGLR-TGVKVAVVDATG---KLVATDTIYPHTGQ--AAKSAPI---IAA 372

Query: 59  VIKNWRPEEAAV 70
           +   ++ E  A+
Sbjct: 373 LCLKYQVELVAI 384


>gi|332830579|gb|EGK03193.1| hypothetical protein HMPREF9455_00684 [Dysgonomonas gadei ATCC
          BAA-286]
          Length = 320

 Score = 33.8 bits (77), Expect = 9.1,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 8  IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
          IGID G   + +GIVD  G     ++ G+I +   + +   +  L  G+ ++I  
Sbjct: 7  IGIDIGGTNSVFGIVDKRG---HIINQGSIKTGAYKEINEYVDHLSAGVQEIIDQ 58


>gi|197303729|ref|ZP_03168766.1| hypothetical protein RUMLAC_02458 [Ruminococcus lactaris ATCC
          29176]
 gi|197297249|gb|EDY31812.1| hypothetical protein RUMLAC_02458 [Ruminococcus lactaris ATCC
          29176]
          Length = 148

 Score = 33.8 bits (77), Expect = 9.2,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 31/69 (44%), Gaps = 11/69 (15%)

Query: 5  IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
          +RI+G+D G +  G  I D        +++  I +  R+    +L +    +  +IK + 
Sbjct: 1  MRIMGLDYGTKTVGVAISDALK-----ITAQGIETIQRKE-ENKLRKTCARIEQLIKEYE 54

Query: 65 PEEAAVEQV 73
               VE++
Sbjct: 55 -----VEKI 58


>gi|325955459|ref|YP_004239119.1| CRISPR-associated protein, Csn1 family [Weeksella virosa DSM
          16922]
 gi|323438077|gb|ADX68541.1| CRISPR-associated protein, Csn1 family [Weeksella virosa DSM
          16922]
          Length = 1440

 Score = 33.8 bits (77), Expect = 9.3,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 11/42 (26%)

Query: 7  IIGIDPGLRRTGWGIVDVA-----------GDNLCFVSSGTI 37
          I+G+D G    GW +V+             G  +  + +G I
Sbjct: 4  ILGLDLGTNSIGWALVEQDFENKQGLILGMGSRIIPMDAGII 45


>gi|163802253|ref|ZP_02196148.1| hypothetical protein 1103602000603_AND4_17714 [Vibrio sp. AND4]
 gi|159174058|gb|EDP58868.1| hypothetical protein AND4_17714 [Vibrio sp. AND4]
          Length = 773

 Score = 33.8 bits (77), Expect = 9.3,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 9/65 (13%)

Query: 8   IGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           +G+DPGLR TG    IVD  G     + + TI     Q    +   +   +  +++ +  
Sbjct: 329 LGLDPGLR-TGSKIAIVDPTG---KVLVTETIYPHPPQKQYDKSAHI---VDQLVRKYNV 381

Query: 66  EEAAV 70
           +  A+
Sbjct: 382 DLIAI 386


>gi|183597001|ref|ZP_02958494.1| hypothetical protein PROSTU_00232 [Providencia stuartii ATCC 25827]
 gi|188023656|gb|EDU61696.1| hypothetical protein PROSTU_00232 [Providencia stuartii ATCC 25827]
          Length = 777

 Score = 33.8 bits (77), Expect = 9.7,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 14/72 (19%)

Query: 1   MRKSIRIIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTD 58
           MR ++   G+DPGLR TG    +VD  G     +++ TI     Q+           +  
Sbjct: 325 MRATM---GLDPGLR-TGVKVAVVDATG---KLIATDTIYPHTGQAAKA-----AASVAA 372

Query: 59  VIKNWRPEEAAV 70
           + +  + E  A+
Sbjct: 373 LCQKHQVELVAI 384


>gi|295835561|ref|ZP_06822494.1| transcriptional accessory protein [Streptomyces sp. SPB74]
 gi|295825552|gb|EFG64308.1| transcriptional accessory protein [Streptomyces sp. SPB74]
          Length = 866

 Score = 33.4 bits (76), Expect = 9.8,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 19/70 (27%)

Query: 8   IGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCV-----RQSLAFRLCQLYEGLTDVI 60
           +G+DPGLR TG    +VD  G     V++ TI           +LA         L  + 
Sbjct: 475 LGLDPGLR-TGVKVAVVDATG---KVVATDTIYPHAPRNRWDDALAS--------LARLA 522

Query: 61  KNWRPEEAAV 70
           +  + +  A+
Sbjct: 523 ERHQVDLIAI 532


>gi|163867685|ref|YP_001608886.1| hypothetical protein Btr_0437 [Bartonella tribocorum CIP 105476]
 gi|161017333|emb|CAK00891.1| phage-related conserved hypothetical protein [Bartonella tribocorum
           CIP 105476]
          Length = 149

 Score = 33.4 bits (76), Expect = 9.8,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 45/140 (32%), Gaps = 32/140 (22%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFR---------------LCQ 51
           I+ +D G  +TGW I    G           ++   +    R               L +
Sbjct: 8   ILCLDLG-TKTGWAICGADG----------FITSDTEHFQSRRFEGGGMRYLRFKKWLSE 56

Query: 52  LYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTI 111
           L   + ++      +    E+V  +    A    G   A         +IP       TI
Sbjct: 57  LKRSVDEI------DTVYFEEVRRHVGTDAAHVYGGFLATLTAWCEHHQIPYEGIPVGTI 110

Query: 112 KKAVIGVGHGDKKQIHMMLK 131
           KK   G G+  K+++   ++
Sbjct: 111 KKVTTGKGNASKEEMIKAMR 130


>gi|146317727|ref|YP_001197439.1| Holliday junction resolvase-like protein [Streptococcus suis
           05ZYH33]
 gi|146319916|ref|YP_001199627.1| Holliday junction resolvase-like protein [Streptococcus suis
           98HAH33]
 gi|223934259|ref|ZP_03626188.1| Holliday junction resolvase YqgF [Streptococcus suis 89/1591]
 gi|253750983|ref|YP_003024124.1| Holliday junction resolvase [Streptococcus suis SC84]
 gi|253752883|ref|YP_003026023.1| Holliday junction resolvase [Streptococcus suis P1/7]
 gi|253754708|ref|YP_003027848.1| Holliday junction resolvase [Streptococcus suis BM407]
 gi|167016513|sp|A4VYN8|RUVX_STRS2 RecName: Full=Putative Holliday junction resolvase
 gi|167016515|sp|A4VSF0|RUVX_STRSY RecName: Full=Putative Holliday junction resolvase
 gi|145688533|gb|ABP89039.1| Unknown protein [Streptococcus suis 05ZYH33]
 gi|145690722|gb|ABP91227.1| unknown protein [Streptococcus suis 98HAH33]
 gi|223897073|gb|EEF63505.1| Holliday junction resolvase YqgF [Streptococcus suis 89/1591]
 gi|251815272|emb|CAZ50837.1| putative Holliday junction resolvase [Streptococcus suis SC84]
 gi|251817172|emb|CAZ54893.1| putative Holliday junction resolvase [Streptococcus suis BM407]
 gi|251819128|emb|CAR44214.1| putative Holliday junction resolvase [Streptococcus suis P1/7]
 gi|292557526|gb|ADE30527.1| Resolvase, holliday junction-type, YqgF-like protein [Streptococcus
           suis GZ1]
          Length = 139

 Score = 33.4 bits (76), Expect = 9.8,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 46/101 (45%), Gaps = 12/101 (11%)

Query: 5   IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLY--EGLTDVIKN 62
           +RI+G+D G +  G  I     D L F + G  +  + +         +  E LT++++ 
Sbjct: 1   MRIMGLDVGSKTVGVAI----SDPLGFTAQGLEIIPIDEEKGE-----FGLERLTELVEQ 51

Query: 63  WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPV 103
           ++ ++  V  +  N +  +  ++  ++A   L     ++PV
Sbjct: 52  YKVDKFVV-GLPKNMNNTSGPRVEASQAYGDLLTERYKLPV 91


>gi|15603313|ref|NP_246387.1| hypothetical protein PM1448 [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|12721827|gb|AAK03532.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 791

 Score = 33.4 bits (76), Expect = 9.9,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 11/65 (16%)

Query: 8   IGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
           +G+DPGLR TG    +VD  G     +++ TI     Q +   +  LY     +IK  + 
Sbjct: 349 MGLDPGLR-TGVKVAVVDNTG---KLLATDTIYPHTGQ-MDNAMTTLYR----LIKAHQV 399

Query: 66  EEAAV 70
           E  A+
Sbjct: 400 ELIAI 404


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.314    0.188    0.663 

Lambda     K      H
   0.267   0.0576    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,127,279,332
Number of Sequences: 14124377
Number of extensions: 213703503
Number of successful extensions: 549968
Number of sequences better than 10.0: 2381
Number of HSP's better than 10.0 without gapping: 3147
Number of HSP's successfully gapped in prelim test: 802
Number of HSP's that attempted gapping in prelim test: 543008
Number of HSP's gapped (non-prelim): 4045
length of query: 169
length of database: 4,842,793,630
effective HSP length: 128
effective length of query: 41
effective length of database: 3,034,873,374
effective search space: 124429808334
effective search space used: 124429808334
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.0 bits)
S2: 77 (33.8 bits)