BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254780554|ref|YP_003064967.1| Holliday junction resolvase
[Candidatus Liberibacter asiaticus str. psy62]
(169 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
>gi|323702067|ref|ZP_08113735.1| crossover junction endodeoxyribonuclease RuvC [Desulfotomaculum
nigrificans DSM 574]
gi|323532949|gb|EGB22820.1| crossover junction endodeoxyribonuclease RuvC [Desulfotomaculum
nigrificans DSM 574]
Length = 163
Score = 198 bits (505), Expect = 2e-49, Method: Composition-based stats.
Identities = 62/157 (39%), Positives = 97/157 (61%), Gaps = 1/157 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ I+GIDPG TG+G+++ G++ V + + SL RL LY+ + +I ++
Sbjct: 1 MIILGIDPGTAITGYGVLEFKGNSYKPVDYNCLRTGPELSLDLRLKNLYQEINRIIAKYQ 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ AVE++F NK+ L +G AR +A+L+ A A IPV+EY P +K+AV G G DK+
Sbjct: 61 PQYMAVEELFFNKNVRTALAVGHARGVALLAGANAGIPVAEYTPLQVKQAVTGYGKADKQ 120
Query: 125 QIHMMLKMLMPESF-FKGKDAADALAIAVCHAYHANS 160
Q+ M+K L+ K D ADALA+A+CHA+ ++S
Sbjct: 121 QVQFMVKTLLSLPEVPKPDDVADALAVAICHAHWSSS 157
>gi|291612982|ref|YP_003523139.1| crossover junction endodeoxyribonuclease RuvC [Sideroxydans
lithotrophicus ES-1]
gi|291583094|gb|ADE10752.1| crossover junction endodeoxyribonuclease RuvC [Sideroxydans
lithotrophicus ES-1]
Length = 183
Score = 197 bits (500), Expect = 6e-49, Method: Composition-based stats.
Identities = 76/167 (45%), Positives = 106/167 (63%), Gaps = 2/167 (1%)
Query: 2 RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
+ SIRI+GIDPGLR TG+G+VD G L +V+SG I + L RL + L +VI
Sbjct: 9 KSSIRILGIDPGLRITGFGVVDKEGQQLHYVASGCIKTP-DGELPERLKVILASLGEVIA 67
Query: 62 NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
+PE+ AVE+VFVN + +TL LGQAR AI + A +PV+EY +K+AV+G GH
Sbjct: 68 QHKPEQVAVEKVFVNVNPQSTLLLGQARGAAICAAVQADLPVAEYTALQVKQAVVGNGHA 127
Query: 122 DKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
DK+Q+ M++ L+ S DAADALA A+CHA+ G +A++
Sbjct: 128 DKEQVQAMVQRLLKLSGTPSPDAADALACAICHAH-GGMGMGALATK 173
>gi|302879790|ref|YP_003848354.1| crossover junction endodeoxyribonuclease RuvC [Gallionella
capsiferriformans ES-2]
gi|302582579|gb|ADL56590.1| crossover junction endodeoxyribonuclease RuvC [Gallionella
capsiferriformans ES-2]
Length = 190
Score = 195 bits (497), Expect = 1e-48, Method: Composition-based stats.
Identities = 77/167 (46%), Positives = 107/167 (64%), Gaps = 2/167 (1%)
Query: 2 RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
R SIRI+GIDPGLR TG+G++D G L +V+SG I + L RL + L VI
Sbjct: 16 RASIRILGIDPGLRITGFGVIDKVGQQLHYVASGCIKTPAG-DLPERLKVILNSLGVVIT 74
Query: 62 NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
+P++AAVE+VFVN + +TL LGQAR AI + LA +PV EY +K+AV+G GH
Sbjct: 75 QHQPDQAAVEKVFVNVNPQSTLLLGQARGAAICAAVLANLPVGEYTALQVKQAVVGNGHA 134
Query: 122 DKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
DK+Q+ +M++ L+ S DAADALA A+CHA+ G +A++
Sbjct: 135 DKEQVQLMVQRLLKLSGTPSPDAADALACAICHAH-GGLGLGALATK 180
>gi|158320756|ref|YP_001513263.1| crossover junction endodeoxyribonuclease RuvC [Alkaliphilus
oremlandii OhILAs]
gi|167012675|sp|A8MHI5|RUVC_ALKOO RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|158140955|gb|ABW19267.1| crossover junction endodeoxyribonuclease RuvC [Alkaliphilus
oremlandii OhILAs]
Length = 164
Score = 194 bits (494), Expect = 3e-48, Method: Composition-based stats.
Identities = 57/156 (36%), Positives = 86/156 (55%), Gaps = 1/156 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ I+GIDPGL G+GI++ G+ + G I + + RL +Y L +I +
Sbjct: 1 MIILGIDPGLAILGYGIINYEGNRFKVLDYGAITTPSTMATPERLKTIYRELDRIITEYN 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ A+E++F N + L +G AR +A+LS A + EY P +K+ V+G G DK
Sbjct: 61 PDTVAIEELFFNTNVKTALLVGHARGVAVLSAANHNKEIFEYTPLQVKQGVVGYGRADKS 120
Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHAN 159
QI M+K L+ K D ADALA+A+CHA+ N
Sbjct: 121 QIQQMVKTLLNLTKVPKPDDVADALAVAICHAHTGN 156
>gi|134299517|ref|YP_001113013.1| crossover junction endodeoxyribonuclease RuvC [Desulfotomaculum
reducens MI-1]
gi|172044283|sp|A4J535|RUVC_DESRM RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|134052217|gb|ABO50188.1| Holliday junction endonuclease RuvC [Desulfotomaculum reducens
MI-1]
Length = 163
Score = 194 bits (494), Expect = 3e-48, Method: Composition-based stats.
Identities = 65/162 (40%), Positives = 102/162 (62%), Gaps = 1/162 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ I+GIDPG TG+G+++ G+ ++ + + L RL +LY+GL D+IK ++
Sbjct: 1 MIILGIDPGTAITGYGVIEFIGNRYKPITYSCLRTEPDLPLDLRLKKLYQGLMDIIKRYQ 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ AVE++F NK+A L +G AR IA+L+ A + IPV+EY P +K+AV G G +K+
Sbjct: 61 PDCMAVEELFFNKNARTALAVGHARGIALLAGANSSIPVAEYTPLQVKQAVTGYGKAEKQ 120
Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHANSGYYKI 165
QI M+K L+ K D ADALA+A+CHA +++ +I
Sbjct: 121 QIQFMVKTLLSLPEIPKPDDVADALAVAICHAQWSSTFGGRI 162
>gi|95931132|ref|ZP_01313857.1| crossover junction endodeoxyribonuclease RuvC [Desulfuromonas
acetoxidans DSM 684]
gi|95132822|gb|EAT14496.1| crossover junction endodeoxyribonuclease RuvC [Desulfuromonas
acetoxidans DSM 684]
Length = 175
Score = 193 bits (492), Expect = 6e-48, Method: Composition-based stats.
Identities = 73/163 (44%), Positives = 109/163 (66%), Gaps = 1/163 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPG R TG+GI+D G+ L V +G I + +L RL ++++GL ++I +R
Sbjct: 1 MRILGIDPGTRITGYGIIDQQGNRLRHVDNGAIYTQSSDALPKRLKKIHDGLCEIILQYR 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ A+EQVFV K+A++ LKLGQAR AI++ A +PVSEY+ +K AV+G G K
Sbjct: 61 PDAVAIEQVFVAKNALSALKLGQARGAAIVAGVNADLPVSEYSALQVKSAVVGYGKAAKS 120
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHAN-SGYYKIA 166
Q+ M+K LM +DA+DALA+A+CHA+ A+ +G + A
Sbjct: 121 QVQQMVKALMNLPEVAQEDASDALAVAICHAHSAHVNGQVRQA 163
>gi|269797653|ref|YP_003311553.1| crossover junction endodeoxyribonuclease RuvC [Veillonella parvula
DSM 2008]
gi|282850098|ref|ZP_06259480.1| crossover junction endodeoxyribonuclease RuvC [Veillonella parvula
ATCC 17745]
gi|294793312|ref|ZP_06758457.1| crossover junction endodeoxyribonuclease RuvC [Veillonella sp.
6_1_27]
gi|294795134|ref|ZP_06760268.1| crossover junction endodeoxyribonuclease RuvC [Veillonella sp.
3_1_44]
gi|269094282|gb|ACZ24273.1| crossover junction endodeoxyribonuclease RuvC [Veillonella parvula
DSM 2008]
gi|282580287|gb|EFB85688.1| crossover junction endodeoxyribonuclease RuvC [Veillonella parvula
ATCC 17745]
gi|294453926|gb|EFG22301.1| crossover junction endodeoxyribonuclease RuvC [Veillonella sp.
3_1_44]
gi|294455743|gb|EFG24108.1| crossover junction endodeoxyribonuclease RuvC [Veillonella sp.
6_1_27]
Length = 164
Score = 192 bits (489), Expect = 1e-47, Method: Composition-based stats.
Identities = 62/161 (38%), Positives = 97/161 (60%), Gaps = 1/161 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RIIGIDPG G+GI+DV G L V+ G I + + + RL L+ L+D+++ +R
Sbjct: 1 MRIIGIDPGTAICGYGIIDVKGSKLTPVAYGAITTPKELTDSQRLEILFNDLSDLLEEYR 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P++ VE++F N++ +K+GQAR + +L+ RIP+ EY P IK+AV G G DK
Sbjct: 61 PDKFGVEELFFNRNVTTAIKVGQARGVILLAAEQQRIPIYEYTPLQIKQAVTGYGKADKN 120
Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHANSGYYK 164
Q+ M ++ K D ADALA+A+C A+ +++ K
Sbjct: 121 QVIYMTMNILGIREKIKPDDTADALAVAICTAHSSHNDRLK 161
>gi|150390101|ref|YP_001320150.1| crossover junction endodeoxyribonuclease RuvC [Alkaliphilus
metalliredigens QYMF]
gi|167012674|sp|A6TQM3|RUVC_ALKMQ RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|149949963|gb|ABR48491.1| crossover junction endodeoxyribonuclease RuvC [Alkaliphilus
metalliredigens QYMF]
Length = 164
Score = 192 bits (489), Expect = 1e-47, Method: Composition-based stats.
Identities = 54/156 (34%), Positives = 92/156 (58%), Gaps = 1/156 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ I+GIDPG+ G+GIV G+ + G I + + + RL ++Y L ++I ++
Sbjct: 1 MIILGIDPGIAILGYGIVKYEGNKFKVIDYGAIKTSSKMATPQRLKEIYLRLDELISEYQ 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ A+E++F N + + + AR +A+L+ A+ + EY P +K+AV+G G +KK
Sbjct: 61 PDAVAIEELFFNTNTTTAMVVSHARGVAVLAAAIHEKEIYEYTPLQVKQAVVGYGRAEKK 120
Query: 125 QIHMMLKMLMPESF-FKGKDAADALAIAVCHAYHAN 159
Q+ M+K+L+ K D ADALA+AVCHA+ +
Sbjct: 121 QVQQMIKILLNLEQAPKPDDVADALAVAVCHAHSGH 156
>gi|114330309|ref|YP_746531.1| crossover junction endodeoxyribonuclease RuvC [Nitrosomonas
eutropha C91]
gi|122314645|sp|Q0AJA5|RUVC_NITEC RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|114307323|gb|ABI58566.1| crossover junction endodeoxyribonuclease RuvC [Nitrosomonas
eutropha C91]
Length = 178
Score = 192 bits (489), Expect = 1e-47, Method: Composition-based stats.
Identities = 71/167 (42%), Positives = 104/167 (62%), Gaps = 2/167 (1%)
Query: 3 KSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
KSIRI+GIDPGLR TG+G+++ G L ++ SG +V+ L RL + +GL ++I
Sbjct: 6 KSIRILGIDPGLRITGFGVIEKNGSQLTYLGSGCVVTEKSG-LPDRLKTILDGLNEIILQ 64
Query: 63 WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
+PE+ AVEQVFVN + +TL LGQAR AI + L + V EY IK++V+G GH
Sbjct: 65 HQPEQVAVEQVFVNINPKSTLLLGQARGAAISAAVLHELSVYEYTALQIKQSVVGNGHAR 124
Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQD 169
K+Q+ M+ L+ DAADALA A+CHA+ +G ++ ++
Sbjct: 125 KEQVQEMVMRLLRLGERPRPDAADALACAICHAH-GGTGLLALSVRN 170
>gi|254780554|ref|YP_003064967.1| Holliday junction resolvase [Candidatus Liberibacter asiaticus str.
psy62]
gi|254040231|gb|ACT57027.1| Holliday junction resolvase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 169
Score = 192 bits (488), Expect = 1e-47, Method: Composition-based stats.
Identities = 169/169 (100%), Positives = 169/169 (100%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI
Sbjct: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH
Sbjct: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQD 169
GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQD
Sbjct: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQD 169
>gi|20807634|ref|NP_622805.1| Holliday junction resolvasome endonuclease subunit
[Thermoanaerobacter tengcongensis MB4]
gi|22096143|sp|Q8RAN4|RUVC_THETN RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|20516177|gb|AAM24409.1| Holliday junction resolvasome endonuclease subunit
[Thermoanaerobacter tengcongensis MB4]
Length = 165
Score = 192 bits (488), Expect = 2e-47, Method: Composition-based stats.
Identities = 60/163 (36%), Positives = 101/163 (61%), Gaps = 2/163 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+R++GIDPG+ G+G+V+ + + G I + AFRL LY+GL D+IK +R
Sbjct: 1 MRVLGIDPGIATLGYGVVEYKNNKFSPIVYGAITTDAGVDKAFRLYTLYKGLEDIIKLYR 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
PE A+E++F NK++ + +G+ R I+IL+ + + V EY P +K+AV+G G +K+
Sbjct: 61 PEIVAIEELFYNKNSKTVITIGEVRGISILAAVNSGVKVYEYTPLQVKQAVVGYGRAEKQ 120
Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHANSGYYKIA 166
Q+ M+K+L+ K D ADALA+A+CH + +N+ ++
Sbjct: 121 QVQQMVKVLLNLDEIPKPDDVADALAVAICHCH-SNNMLERLG 162
>gi|222055418|ref|YP_002537780.1| crossover junction endodeoxyribonuclease RuvC [Geobacter sp.
FRC-32]
gi|254767474|sp|B9LZC6|RUVC_GEOSF RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|221564707|gb|ACM20679.1| crossover junction endodeoxyribonuclease RuvC [Geobacter sp.
FRC-32]
Length = 173
Score = 192 bits (488), Expect = 2e-47, Method: Composition-based stats.
Identities = 61/153 (39%), Positives = 97/153 (63%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
++I+GIDPG R TG+GIV G+ L V +G I + + RL ++Y L+++I+ +R
Sbjct: 1 MKILGIDPGSRITGYGIVTKEGNRLIHVDNGAIFTDSAKDFPSRLKRIYGSLSEIIETYR 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ AVE +F + + + LKLGQAR AI++ A + V EY +K+AV+G G K+
Sbjct: 61 PDAVAVENIFFSNNVQSALKLGQARGAAIVAGVNAGLDVFEYTALQVKQAVVGNGKAAKQ 120
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYH 157
Q+ M+K+L+ +DA+DALA+A+CHA+
Sbjct: 121 QVQQMIKVLLNLPEIAQEDASDALAVAICHAHS 153
>gi|313894587|ref|ZP_07828150.1| crossover junction endodeoxyribonuclease RuvC [Veillonella sp. oral
taxon 158 str. F0412]
gi|313440777|gb|EFR59206.1| crossover junction endodeoxyribonuclease RuvC [Veillonella sp. oral
taxon 158 str. F0412]
Length = 164
Score = 192 bits (488), Expect = 2e-47, Method: Composition-based stats.
Identities = 62/161 (38%), Positives = 98/161 (60%), Gaps = 1/161 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RIIGIDPG G+GI+DV G L V+ G I + + + RL L+ GL+D+++ ++
Sbjct: 1 MRIIGIDPGTAICGYGIIDVKGSKLTPVAYGAITTPKELTDSQRLEILFNGLSDILEEYK 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P++ VE++F N++ +K+GQAR + +L+ RIP+ EY P IK+AV G G DK
Sbjct: 61 PDKFGVEELFFNRNVTTAIKVGQARGVILLAAEQQRIPIYEYTPLQIKQAVTGYGKADKN 120
Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHANSGYYK 164
Q+ M ++ K D ADALA+A+C A+ +++ K
Sbjct: 121 QVIYMTMNILGIREKIKPDDIADALAVAICTAHSSHNDRLK 161
>gi|238019730|ref|ZP_04600156.1| hypothetical protein VEIDISOL_01605 [Veillonella dispar ATCC 17748]
gi|237863771|gb|EEP65061.1| hypothetical protein VEIDISOL_01605 [Veillonella dispar ATCC 17748]
Length = 164
Score = 192 bits (488), Expect = 2e-47, Method: Composition-based stats.
Identities = 61/161 (37%), Positives = 97/161 (60%), Gaps = 1/161 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RIIGIDPG G+GI+DV G L V+ G I + + + RL L+ L+D+++ ++
Sbjct: 1 MRIIGIDPGTAICGYGIIDVKGSKLTPVAYGAITTPKELTDSQRLEILFNDLSDILEEFK 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P++ VE++F N++ +K+GQAR + +L+ RIP+ EY P IK+AV G G DK
Sbjct: 61 PDKFGVEELFFNRNVTTAIKVGQARGVILLAAEQQRIPIYEYTPLQIKQAVTGYGKADKN 120
Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHANSGYYK 164
Q+ M ++ K D ADALA+A+C A+ +++ K
Sbjct: 121 QVIYMTMNILGIREKIKPDDTADALAVAICTAHSSHNDRLK 161
>gi|313202067|ref|YP_004040725.1| crossover junction endodeoxyribonuclease ruvc [Methylovorus sp.
MP688]
gi|312441383|gb|ADQ85489.1| crossover junction endodeoxyribonuclease RuvC [Methylovorus sp.
MP688]
Length = 178
Score = 191 bits (486), Expect = 2e-47, Method: Composition-based stats.
Identities = 69/169 (40%), Positives = 106/169 (62%), Gaps = 6/169 (3%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQ-----SLAFRLCQLYEGLTDV 59
+RI+GIDPGLR TG+G+++ G+ L +V+SGTI + + L RL + +GL +V
Sbjct: 1 MRILGIDPGLRLTGFGVIEKTGEKLSYVASGTIKTTQGKGAEIEDLPSRLKIILDGLAEV 60
Query: 60 IKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVG 119
I + PE+ A+E+VFVN + +TL LGQAR AI + + +PV+EY +K++V+G G
Sbjct: 61 IATYAPEQVAIEKVFVNVNPQSTLLLGQARGAAICAAVIQNLPVAEYTALQVKQSVVGNG 120
Query: 120 HGDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
H K+Q+ M+K L+ D+ADALA A+CHA+ G +A+
Sbjct: 121 HAAKEQVQEMVKRLLKLPGVPKPDSADALACAICHAH-GGQGLGLLATA 168
>gi|297539688|ref|YP_003675457.1| crossover junction endodeoxyribonuclease RuvC [Methylotenera sp.
301]
gi|297259035|gb|ADI30880.1| crossover junction endodeoxyribonuclease RuvC [Methylotenera sp.
301]
Length = 187
Score = 191 bits (485), Expect = 3e-47, Method: Composition-based stats.
Identities = 69/177 (38%), Positives = 108/177 (61%), Gaps = 12/177 (6%)
Query: 3 KSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCV-----------RQSLAFRLCQ 51
++RI+GIDPGLR TG+G+++ G+ + ++SSGTI + R+ L RL
Sbjct: 2 SNVRILGIDPGLRLTGFGVIEKVGEKITYISSGTIKTASGKKNKVEGEDDREELPARLKI 61
Query: 52 LYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTI 111
+ +GL +VI ++P + A+E+VFVN + +TL LGQAR AI + + + V+EY +
Sbjct: 62 ILDGLFEVIDTYQPNQVAIEKVFVNINPQSTLLLGQARGAAISAAVIRNLSVAEYTALQV 121
Query: 112 KKAVIGVGHGDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
K+AV+G GH K+Q+ M+K L+ D+ADALA A+CHA+ G K+A+
Sbjct: 122 KQAVVGNGHAQKEQVQEMVKRLLNLPATPKPDSADALACAICHAH-GGQGLGKLATA 177
>gi|254000107|ref|YP_003052170.1| Holliday junction resolvase [Methylovorus sp. SIP3-4]
gi|253986786|gb|ACT51643.1| crossover junction endodeoxyribonuclease RuvC [Methylovorus sp.
SIP3-4]
Length = 178
Score = 191 bits (485), Expect = 3e-47, Method: Composition-based stats.
Identities = 68/169 (40%), Positives = 106/169 (62%), Gaps = 6/169 (3%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQ-----SLAFRLCQLYEGLTDV 59
+RI+GIDPGLR TG+G+++ G+ L +++SGTI + + L RL + +GL +V
Sbjct: 1 MRILGIDPGLRLTGFGVIEKTGEKLSYIASGTIKTTQGKGAEIEDLPSRLKIILDGLAEV 60
Query: 60 IKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVG 119
I + PE+ A+E+VFVN + +TL LGQAR AI + + +PV+EY +K++V+G G
Sbjct: 61 IATYAPEQVAIEKVFVNVNPQSTLLLGQARGAAICAAVIQNLPVAEYTALQVKQSVVGNG 120
Query: 120 HGDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
H K+Q+ M+K L+ D+ADALA A+CHA+ G +A+
Sbjct: 121 HAAKEQVQEMVKRLLKLPGVPKPDSADALACAICHAH-GGQGLGLLATA 168
>gi|89895214|ref|YP_518701.1| hypothetical protein DSY2468 [Desulfitobacterium hafniense Y51]
gi|219669645|ref|YP_002460080.1| Holliday junction resolvase [Desulfitobacterium hafniense DCB-2]
gi|123397711|sp|Q24UN5|RUVC_DESHY RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|254767469|sp|B8FQV7|RUVC_DESHD RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|89334662|dbj|BAE84257.1| hypothetical protein [Desulfitobacterium hafniense Y51]
gi|219539905|gb|ACL21644.1| crossover junction endodeoxyribonuclease RuvC [Desulfitobacterium
hafniense DCB-2]
Length = 165
Score = 190 bits (484), Expect = 4e-47, Method: Composition-based stats.
Identities = 58/165 (35%), Positives = 89/165 (53%), Gaps = 2/165 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ I+GIDPG G+G+++ G+ L V + + RL LY + IK +
Sbjct: 1 MLILGIDPGTAIMGYGLIEKKGNRLFPVDYACWRTPAHTPMPERLLMLYHEIEAYIKEKQ 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P AVE++F N++ + +GQAR + +L+ A +PV EY P +K+AV G G DK+
Sbjct: 61 PHHVAVEELFFNRNTTTAISVGQARGVVLLAAAQCGLPVYEYTPLQVKQAVAGYGRADKQ 120
Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
QI M++ L+ K D ADALAIA+CHA+ N ++
Sbjct: 121 QIQQMVRALLGLQEIPKPDDTADALAIAICHAHSVNL-LNRMGGA 164
>gi|163758806|ref|ZP_02165893.1| crossover junction endodeoxyribonuclease RuvC [Hoeflea
phototrophica DFL-43]
gi|162284096|gb|EDQ34380.1| crossover junction endodeoxyribonuclease RuvC [Hoeflea
phototrophica DFL-43]
Length = 168
Score = 190 bits (484), Expect = 4e-47, Method: Composition-based stats.
Identities = 106/168 (63%), Positives = 133/168 (79%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M ++IRIIG+DPGLR TGWG++D G++L FV+SGT+ S + LA RL QLYEGL VI
Sbjct: 1 MAETIRIIGVDPGLRNTGWGVIDSTGNSLRFVASGTVKSDNKLDLASRLNQLYEGLEGVI 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
+ RP EAAVE FVNKDA ATLKLGQAR IA+L+PA A + V+EYAPN +KKAVIGVGH
Sbjct: 61 HSHRPFEAAVENTFVNKDATATLKLGQARGIAMLAPARAGLRVAEYAPNAVKKAVIGVGH 120
Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
GDKKQI MM+KML+P++ F AADALAIA+CHA+H S +++A++
Sbjct: 121 GDKKQILMMVKMLIPKATFDSDHAADALAIAICHAHHRTSPAWRMAAE 168
>gi|288957818|ref|YP_003448159.1| crossover junction endodeoxyribonuclease [Azospirillum sp. B510]
gi|288910126|dbj|BAI71615.1| crossover junction endodeoxyribonuclease [Azospirillum sp. B510]
Length = 352
Score = 190 bits (484), Expect = 5e-47, Method: Composition-based stats.
Identities = 84/156 (53%), Positives = 116/156 (74%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+R++GIDPGLR TGWGI+DVAG+ L V+ G + S R LA RL QL++ L+ V++ +
Sbjct: 1 MRLLGIDPGLRHTGWGIIDVAGNRLSHVADGAVHSDDRCPLAERLLQLHDALSAVVERYH 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+EAAVE+ FVN +AV+TLKLGQARA+A+L PA A + V+EYA N +KKAV+G G +K
Sbjct: 61 PDEAAVEETFVNSNAVSTLKLGQARAVALLVPAQAGLAVAEYANNMVKKAVVGQGRAEKA 120
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
Q+ M+++L+P DAADALA+A+CHA+H S
Sbjct: 121 QVQTMVRLLLPGCGIGTPDAADALAVAICHAHHRAS 156
>gi|303241605|ref|ZP_07328104.1| crossover junction endodeoxyribonuclease RuvC [Acetivibrio
cellulolyticus CD2]
gi|302590825|gb|EFL60574.1| crossover junction endodeoxyribonuclease RuvC [Acetivibrio
cellulolyticus CD2]
Length = 188
Score = 190 bits (483), Expect = 6e-47, Method: Composition-based stats.
Identities = 55/164 (33%), Positives = 92/164 (56%), Gaps = 6/164 (3%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ I+GIDPG TG+G+V G+ V G I + RL L++ L ++I +
Sbjct: 26 MIILGIDPGFAITGYGVVKYEGNKFSVVDYGAITTESSMEFPKRLLYLHDSLKELISRHK 85
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ ++E++F NK+ L +G R +A+L+ A + I V EY P +K++V+G G +K
Sbjct: 86 PDAISIEELFFNKNIKTALTVGHGRGVAVLAAAESGIDVYEYTPLQVKQSVVGYGRAEKA 145
Query: 125 QIHMMLKMLMPES-FFKGKDAADALAIAVCHAYHANSGYYKIAS 167
Q+ M+K+++ K D ADALAIA+CH + +++A
Sbjct: 146 QVQQMIKVILNLPKIPKPDDVADALAIAICHGHS-----HRMAG 184
>gi|304407531|ref|ZP_07389183.1| crossover junction endodeoxyribonuclease RuvC [Paenibacillus
curdlanolyticus YK9]
gi|304343482|gb|EFM09324.1| crossover junction endodeoxyribonuclease RuvC [Paenibacillus
curdlanolyticus YK9]
Length = 166
Score = 190 bits (482), Expect = 8e-47, Method: Composition-based stats.
Identities = 57/154 (37%), Positives = 94/154 (61%), Gaps = 1/154 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+R++GIDPG+ G+G +D G L V G+I + RL Q+YE + ++ ++
Sbjct: 1 MRVLGIDPGIAIVGFGFIDKDGHKLTPVQYGSIETKAHTPSETRLLQVYESASALMDKYK 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ AVE++F N++ +GQAR + IL+ A +P++EY P +K+AV+G G +K+
Sbjct: 61 PDSVAVEKLFFNRNVTTAFDVGQARGVIILAAAQRGLPIAEYTPLQVKQAVVGYGKAEKR 120
Query: 125 QIHMMLKMLMPES-FFKGKDAADALAIAVCHAYH 157
Q+ M++M + S K D ADALA+A+CHA+
Sbjct: 121 QVQEMVRMFLKLSAIPKPDDVADALAVAICHAHS 154
>gi|73540192|ref|YP_294712.1| Holliday junction resolvase [Ralstonia eutropha JMP134]
gi|97274889|sp|Q475R5|RUVC_RALEJ RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|72117605|gb|AAZ59868.1| Crossover junction endodeoxyribonuclease RuvC [Ralstonia eutropha
JMP134]
Length = 181
Score = 190 bits (482), Expect = 9e-47, Method: Composition-based stats.
Identities = 65/152 (42%), Positives = 97/152 (63%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPGLR TG+G+++ G+ L +++SGTI S L RL L++G+++V + +
Sbjct: 1 MRILGIDPGLRTTGFGVLEKHGNKLSYIASGTIKSNGETDLPARLKTLFDGISEVARTYT 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ AA+E+VFVN + +TL LGQAR AI +PV EY +K AV+G G +K+
Sbjct: 61 PDCAAIEKVFVNVNPQSTLLLGQARGAAICGLVGQGLPVFEYTALQLKVAVVGYGRANKE 120
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
Q+ M+ L+ DAADAL +A+CHA
Sbjct: 121 QVQEMVMRLLSLPGRPSTDAADALGVAICHAN 152
>gi|148263483|ref|YP_001230189.1| Holliday junction resolvase [Geobacter uraniireducens Rf4]
gi|189046068|sp|A5G9Y4|RUVC_GEOUR RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|146396983|gb|ABQ25616.1| crossover junction endodeoxyribonuclease RuvC [Geobacter
uraniireducens Rf4]
Length = 171
Score = 189 bits (481), Expect = 9e-47, Method: Composition-based stats.
Identities = 66/162 (40%), Positives = 103/162 (63%), Gaps = 1/162 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
++I+GIDPG R TG+G++ G+ L V +G I + + RL ++Y GL ++I+ +R
Sbjct: 1 MKILGIDPGSRITGYGVISKEGNRLIHVDNGAIFTDKAKDFPARLERIYRGLAEIIETYR 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ AVE +F + + + LKLGQAR AI++ +A +PV EY +K+AV+G G K+
Sbjct: 61 PDAVAVENIFFSNNVQSALKLGQARGAAIVAGVIAGLPVFEYTALQVKQAVVGNGKAAKQ 120
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHAN-SGYYKI 165
Q+ M+K+L+ +DA+DALA+AVCHA + SG KI
Sbjct: 121 QVQQMIKVLLNLPEIAQEDASDALAVAVCHANSSVLSGMLKI 162
>gi|187927482|ref|YP_001897969.1| Holliday junction resolvase [Ralstonia pickettii 12J]
gi|309779816|ref|ZP_07674571.1| crossover junction endodeoxyribonuclease RuvC [Ralstonia sp.
5_7_47FAA]
gi|238691843|sp|B2UFL4|RUVC_RALPJ RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|187724372|gb|ACD25537.1| crossover junction endodeoxyribonuclease RuvC [Ralstonia pickettii
12J]
gi|308921393|gb|EFP67035.1| crossover junction endodeoxyribonuclease RuvC [Ralstonia sp.
5_7_47FAA]
Length = 181
Score = 189 bits (481), Expect = 9e-47, Method: Composition-based stats.
Identities = 66/163 (40%), Positives = 100/163 (61%), Gaps = 1/163 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPGLR TG+G+++ G L +V+SGTI S L RL LY+G+++++ +R
Sbjct: 1 MRILGIDPGLRTTGFGVLERHGHKLVYVASGTIKSNGNADLPSRLKTLYDGVSELVSTYR 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ A++E+VFVN + +TL LGQAR I +PV EY +K+AV+G G +K
Sbjct: 61 PDCASIEKVFVNVNPQSTLLLGQARGAVICGLMSGNLPVFEYTALQLKQAVVGYGRANKD 120
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
Q+ M+ L+ G DA+DAL +A+CHA+ +A
Sbjct: 121 QVQEMVVRLLNLEGKPGADASDALGVAICHAH-GGETLAAMAG 162
>gi|146296576|ref|YP_001180347.1| crossover junction endodeoxyribonuclease RuvC [Caldicellulosiruptor
saccharolyticus DSM 8903]
gi|166231590|sp|A4XJS1|RUVC_CALS8 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|145410152|gb|ABP67156.1| crossover junction endodeoxyribonuclease RuvC [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 166
Score = 189 bits (481), Expect = 9e-47, Method: Composition-based stats.
Identities = 54/162 (33%), Positives = 92/162 (56%), Gaps = 2/162 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R++GIDPG+ TG+GI++ G + G I + + RL LY L +I +
Sbjct: 1 MRVLGIDPGIALTGYGIIESKNGSEFKVIDYGRIETSSSLKKSMRLLHLYTELCSIISLY 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
+P+ A+E++F +K++ + +G+AR + IL+ + + EY P +K+++ G G DK
Sbjct: 61 QPDVVAIEELFFSKNSKTAITIGEARGVIILTCIQNNLSIYEYTPLQVKQSITGYGRADK 120
Query: 124 KQIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHANSGYYK 164
QI M+K L+ K D ADALA+A+CH ++S Y+
Sbjct: 121 TQIQKMVKSLLGLSEIPKPDDVADALAVAMCHILSSSSVLYQ 162
>gi|251798378|ref|YP_003013109.1| Holliday junction resolvase [Paenibacillus sp. JDR-2]
gi|247546004|gb|ACT03023.1| crossover junction endodeoxyribonuclease RuvC [Paenibacillus sp.
JDR-2]
Length = 166
Score = 189 bits (481), Expect = 9e-47, Method: Composition-based stats.
Identities = 58/156 (37%), Positives = 93/156 (59%), Gaps = 1/156 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+R++GIDPG+ G+G +D G L V G I + RL Q+Y+ ++ ++
Sbjct: 1 MRVLGIDPGIAIAGFGFIDKDGHKLKPVQYGCIQTAAHTPQEERLVQIYDSAVALMDKYK 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ AVE++F N++ +GQAR + IL+ A +PV+EY P +K+AV+G G +K+
Sbjct: 61 PDTVAVEKLFFNRNVTTAFAVGQARGVIILAAAQRGLPVAEYTPLQVKQAVVGYGKAEKR 120
Query: 125 QIHMMLKMLMPES-FFKGKDAADALAIAVCHAYHAN 159
Q+ M+KM + S K D ADALA+A+CHA+ +
Sbjct: 121 QVQEMVKMFLKLSAIPKPDDVADALAVAICHAHSSG 156
>gi|300705138|ref|YP_003746741.1| endodeoxyribonuclease subunit C of ruvABC holliday junction
resolvasome [Ralstonia solanacearum CFBP2957]
gi|299072802|emb|CBJ44157.1| endodeoxyribonuclease, subunit C of RuvABC Holliday junction
resolvasome [Ralstonia solanacearum CFBP2957]
Length = 181
Score = 189 bits (480), Expect = 1e-46, Method: Composition-based stats.
Identities = 68/163 (41%), Positives = 102/163 (62%), Gaps = 1/163 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPGLR TG+G+++ G L +V+SGTI S L RL LY+G++++++ +R
Sbjct: 1 MRILGIDPGLRTTGFGVLERHGHQLVYVASGTIKSDGNTDLPSRLKTLYDGVSELVRTYR 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ A++E+VFVN + +TL LGQAR AI +PV EY +K AV+G G +K+
Sbjct: 61 PDCASIEKVFVNVNPQSTLLLGQARGAAICGLVSGGLPVFEYTALQLKLAVVGYGRANKE 120
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
Q+ M+ L+ G DAADAL +A+CHA+ +A
Sbjct: 121 QVQDMVVRLLNLEGRPGTDAADALGVAICHAH-GGDTLSAMAG 162
>gi|294782151|ref|ZP_06747477.1| crossover junction endodeoxyribonuclease RuvC [Fusobacterium sp.
1_1_41FAA]
gi|294480792|gb|EFG28567.1| crossover junction endodeoxyribonuclease RuvC [Fusobacterium sp.
1_1_41FAA]
Length = 194
Score = 189 bits (480), Expect = 1e-46, Method: Composition-based stats.
Identities = 53/166 (31%), Positives = 86/166 (51%), Gaps = 1/166 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+R+IGIDPG G+GI+D + V G I++ S RL +Y L ++K ++
Sbjct: 1 MRVIGIDPGTAIVGYGIIDYNKNKYSIVDYGVILTSKDLSNEERLEIVYNELDKILKKYK 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
PE A+E +F K+ + + QAR + +L+ IP+S Y P +K + G G +KK
Sbjct: 61 PEFMAIEDLFYFKNNKTVISVAQARGVILLAGKQNNIPISNYTPLQVKIGITGYGKAEKK 120
Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHANSGYYKIASQD 169
Q+ +M++ + K DAADALAI + H +S + +
Sbjct: 121 QVQLMVQKFLGLSEIPKPDDAADALAICITHINSLSSNISFTGTSN 166
>gi|300692486|ref|YP_003753481.1| endodeoxyribonuclease, subunit C of RuvABC Holliday junction
resolvasome [Ralstonia solanacearum PSI07]
gi|299079546|emb|CBJ52224.1| endodeoxyribonuclease, subunit C of RuvABC Holliday junction
resolvasome [Ralstonia solanacearum PSI07]
Length = 181
Score = 189 bits (480), Expect = 1e-46, Method: Composition-based stats.
Identities = 68/163 (41%), Positives = 102/163 (62%), Gaps = 1/163 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPGLR TG+G+++ G L +V+SGTI S L RL LY+G++++++ +R
Sbjct: 1 MRILGIDPGLRTTGFGVLERHGHQLVYVASGTIKSDGNADLPSRLKTLYDGVSELVRIYR 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ A++E+VFVN + +TL LGQAR AI +PV EY +K AV+G G +K+
Sbjct: 61 PDCASIEKVFVNVNPQSTLLLGQARGAAICGLVSGDLPVFEYTALQLKLAVVGYGRANKE 120
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
Q+ M+ L+ G DAADAL +A+CHA+ +A
Sbjct: 121 QVQDMVVRLLNLEGRPGSDAADALGVAICHAH-GGETLSAMAG 162
>gi|30248235|ref|NP_840305.1| crossover junction endodeoxyribonuclease RuvC [Nitrosomonas
europaea ATCC 19718]
gi|44888452|sp|Q82XP5|RUVC_NITEU RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|30180120|emb|CAD84122.1| Crossover junction endodeoxyribonuclease RuvC [Nitrosomonas
europaea ATCC 19718]
Length = 181
Score = 189 bits (480), Expect = 1e-46, Method: Composition-based stats.
Identities = 72/168 (42%), Positives = 105/168 (62%), Gaps = 2/168 (1%)
Query: 2 RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
K IRI+GIDPGLR TG+GIV+ G+ L ++ SG +V+ L RL + +GL ++I
Sbjct: 8 AKGIRILGIDPGLRITGFGIVEKIGNRLVYIGSGCVVT-GESGLPDRLKTILDGLNEIIL 66
Query: 62 NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
+PE+ AVEQVFVN + +TL LGQAR AI + L + V EY +K+AV+G GH
Sbjct: 67 QHKPEQVAVEQVFVNINPKSTLLLGQARGAAISAAVLHELSVYEYTALQVKQAVVGNGHA 126
Query: 122 DKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQD 169
K+Q+ M+ L+ DAADALA A+CHA+ +G +++++
Sbjct: 127 RKEQVQEMVMRLLGLGERPRPDAADALACAICHAH-GGTGLLTLSARN 173
>gi|315645784|ref|ZP_07898905.1| crossover junction endodeoxyribonuclease RuvC [Paenibacillus vortex
V453]
gi|315278545|gb|EFU41859.1| crossover junction endodeoxyribonuclease RuvC [Paenibacillus vortex
V453]
Length = 167
Score = 188 bits (479), Expect = 2e-46, Method: Composition-based stats.
Identities = 57/154 (37%), Positives = 90/154 (58%), Gaps = 1/154 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPG+ G+G VD G + V G I + RL +YEG+ +I +
Sbjct: 1 MRILGIDPGIAIVGFGFVDKVGSKVTPVQYGCIQTEAHTPDEERLLHVYEGMQQLIDKYE 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
PE A E++F N++ + + QAR + IL+ +P++EY P +K+A++G G +KK
Sbjct: 61 PEAVAFEKLFFNRNVTTAMSVSQARGVLILAAIQRGLPIAEYTPMQVKQAIVGYGKAEKK 120
Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYH 157
Q+ M++M + S K D ADALA+A+CHA+
Sbjct: 121 QVQEMVRMFLKLQSIPKPDDVADALAVAICHAHS 154
>gi|83749325|ref|ZP_00946322.1| Crossover junction endodeoxyribonuclease ruvC [Ralstonia
solanacearum UW551]
gi|207742354|ref|YP_002258746.1| crossover junction endodeoxyribonuclease ruvc (hollidayjunction
nuclease ruvc) (holliday juction resolvase ruvc) protein
[Ralstonia solanacearum IPO1609]
gi|83724003|gb|EAP71184.1| Crossover junction endodeoxyribonuclease ruvC [Ralstonia
solanacearum UW551]
gi|206593744|emb|CAQ60671.1| crossover junction endodeoxyribonuclease ruvc (hollidayjunction
nuclease ruvc) (holliday juction resolvase ruvc) protein
[Ralstonia solanacearum IPO1609]
Length = 181
Score = 188 bits (479), Expect = 2e-46, Method: Composition-based stats.
Identities = 68/163 (41%), Positives = 102/163 (62%), Gaps = 1/163 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPGLR TG+G+++ G L +V+SGTI S L RL LY+G++++++ +R
Sbjct: 1 MRILGIDPGLRTTGFGVLERHGHQLVYVASGTIKSDGNADLPSRLKTLYDGVSELVRTYR 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ A++E+VFVN + +TL LGQAR AI +PV EY +K AV+G G +K+
Sbjct: 61 PDCASIEKVFVNVNPQSTLLLGQARGAAICGLVSGELPVFEYTALQLKLAVVGYGRANKE 120
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
Q+ M+ L+ G DAADAL +A+CHA+ +A
Sbjct: 121 QVQDMVVRLLNLEGRPGTDAADALGVAICHAH-GGDTLSAMAG 162
>gi|207727948|ref|YP_002256342.1| crossover junction endodeoxyribonuclease ruvc (hollidayjunction
nuclease ruvc) (holliday juction resolvase ruvc) protein
[Ralstonia solanacearum MolK2]
gi|206591191|emb|CAQ56803.1| crossover junction endodeoxyribonuclease ruvc (hollidayjunction
nuclease ruvc) (holliday juction resolvase ruvc) protein
[Ralstonia solanacearum MolK2]
Length = 181
Score = 188 bits (478), Expect = 2e-46, Method: Composition-based stats.
Identities = 67/152 (44%), Positives = 100/152 (65%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPGLR TG+G+++ G L +V+SGTI S L RL LY+G++++++ +R
Sbjct: 1 MRILGIDPGLRTTGFGVLERHGHQLVYVASGTIKSDGNADLPSRLKTLYDGVSELVRTYR 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ A++E+VFVN + +TL LGQAR AI +PV EY +K AV+G G +K+
Sbjct: 61 PDCASIEKVFVNVNPQSTLLLGQARGAAICGLVSGELPVFEYTALQLKLAVVGYGRANKE 120
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
Q+ M+ L+ G DAADAL +A+CHA+
Sbjct: 121 QVQDMVVRLLNLEGRPGTDAADALGVAICHAH 152
>gi|78221964|ref|YP_383711.1| Holliday junction resolvase [Geobacter metallireducens GS-15]
gi|123742916|sp|Q39XN8|RUVC_GEOMG RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|78193219|gb|ABB30986.1| Holliday junction endonuclease RuvC [Geobacter metallireducens
GS-15]
Length = 164
Score = 188 bits (478), Expect = 2e-46, Method: Composition-based stats.
Identities = 71/155 (45%), Positives = 102/155 (65%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+R++GIDPG R TG+GI++ G+ L V +G I + + A RL +++EGL +VI +R
Sbjct: 1 MRVLGIDPGSRITGYGIIEKVGNRLVHVDNGAIHTDNHKEFALRLHRIFEGLCEVIAEYR 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ AVEQVF+ +A + LKLGQAR AI++ A +PVSEY +K+AV+G GH K+
Sbjct: 61 PDAMAVEQVFLAHNAQSALKLGQARGAAIVAGVNAGLPVSEYTAMQVKQAVVGYGHARKE 120
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHAN 159
Q+ M+K L+ DA+DALA+AVCHA A
Sbjct: 121 QVQQMVKSLLNLPEIAQADASDALAVAVCHANSAG 155
>gi|262068025|ref|ZP_06027637.1| crossover junction endodeoxyribonuclease RuvC [Fusobacterium
periodonticum ATCC 33693]
gi|291378247|gb|EFE85765.1| crossover junction endodeoxyribonuclease RuvC [Fusobacterium
periodonticum ATCC 33693]
Length = 190
Score = 188 bits (478), Expect = 2e-46, Method: Composition-based stats.
Identities = 53/166 (31%), Positives = 86/166 (51%), Gaps = 1/166 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+R+IGIDPG G+GI+D + V G I++ S RL +Y L ++K ++
Sbjct: 1 MRVIGIDPGTAIVGYGIIDYNKNKYSIVDYGVILTSKDLSNEERLEIVYNELDKILKKYK 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
PE A+E +F K+ + + QAR + +L+ IP+S Y P +K + G G +KK
Sbjct: 61 PEFMAIEDLFYFKNNKTVISVAQARGVILLAGKQNNIPMSNYTPLQVKIGITGYGKAEKK 120
Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHANSGYYKIASQD 169
Q+ +M++ + K DAADALAI + H +S + +
Sbjct: 121 QVQLMVQKFLGLSEIPKPDDAADALAICITHINSLSSNISFTGTSN 166
>gi|261405407|ref|YP_003241648.1| Holliday junction resolvase [Paenibacillus sp. Y412MC10]
gi|329926785|ref|ZP_08281193.1| crossover junction endodeoxyribonuclease RuvC [Paenibacillus sp.
HGF5]
gi|261281870|gb|ACX63841.1| crossover junction endodeoxyribonuclease RuvC [Paenibacillus sp.
Y412MC10]
gi|328938985|gb|EGG35353.1| crossover junction endodeoxyribonuclease RuvC [Paenibacillus sp.
HGF5]
Length = 167
Score = 188 bits (478), Expect = 2e-46, Method: Composition-based stats.
Identities = 57/154 (37%), Positives = 90/154 (58%), Gaps = 1/154 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPG+ G+G VD G + V G I + RL +YEG+ +I +
Sbjct: 1 MRILGIDPGIAIVGFGFVDKVGSKVTPVQYGCIQTEAHTPDEERLHHVYEGMLQLIDKYE 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
PE A E++F N++ + + QAR + IL+ +P++EY P +K+A++G G +KK
Sbjct: 61 PEAVAFEKLFFNRNVTTAMSVSQARGVLILAAVQRGLPIAEYTPMQVKQAIVGYGKAEKK 120
Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYH 157
Q+ M++M + S K D ADALA+A+CHA+
Sbjct: 121 QVQEMVRMFLKLQSIPKPDDVADALAVAICHAHS 154
>gi|91776706|ref|YP_546462.1| crossover junction endodeoxyribonuclease RuvC [Methylobacillus
flagellatus KT]
gi|122985390|sp|Q1GYR6|RUVC_METFK RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|91710693|gb|ABE50621.1| crossover junction endodeoxyribonuclease RuvC [Methylobacillus
flagellatus KT]
Length = 180
Score = 188 bits (478), Expect = 2e-46, Method: Composition-based stats.
Identities = 70/168 (41%), Positives = 107/168 (63%), Gaps = 6/168 (3%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQ-----SLAFRLCQLYEGLTDVI 60
RI+GIDPGLR TG+G+++ G+ L +V+SGTI + + L RL + + L +VI
Sbjct: 4 RILGIDPGLRLTGFGVIEKTGEKLAYVASGTIKTTTGKGSEIEDLPTRLKIILDSLAEVI 63
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
N++P++AA+E+VFVN + +TL LGQAR AI + L +P++EY +K++V+G GH
Sbjct: 64 DNYQPQQAAIEKVFVNVNPQSTLLLGQARGAAISALVLQGLPIAEYTALQVKQSVVGHGH 123
Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
K Q+ M+K L+ D+ADALA A+CHA+ G K+A+
Sbjct: 124 AAKDQVQEMVKRLLNLPGLPRPDSADALACAICHAH-GGQGLGKLATA 170
>gi|303231812|ref|ZP_07318528.1| crossover junction endodeoxyribonuclease RuvC [Veillonella atypica
ACS-049-V-Sch6]
gi|302513519|gb|EFL55545.1| crossover junction endodeoxyribonuclease RuvC [Veillonella atypica
ACS-049-V-Sch6]
Length = 165
Score = 188 bits (478), Expect = 2e-46, Method: Composition-based stats.
Identities = 61/157 (38%), Positives = 95/157 (60%), Gaps = 1/157 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RIIGIDPG G+GI+DV G L V+ G I + + A RL L+ L+D+++ ++
Sbjct: 1 MRIIGIDPGTAICGYGIIDVQGSKLTPVAYGAITTPKELTDAQRLEILFNDLSDILEEYK 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P++ VE++F N++ +K+GQAR + +L+ RIP+ EY P IK+AV G G DK
Sbjct: 61 PDKFGVEELFFNRNVTTAIKVGQARGVILLAAEQQRIPIYEYTPLQIKQAVTGYGKADKN 120
Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHANS 160
Q+ M ++ K D ADALA+A+C A+ ++
Sbjct: 121 QVIYMTMNILGIREKIKPDDTADALAVAICTAHSSHQ 157
>gi|237740695|ref|ZP_04571176.1| crossover junction endodeoxyribonuclease ruvC [Fusobacterium sp.
2_1_31]
gi|229422712|gb|EEO37759.1| crossover junction endodeoxyribonuclease ruvC [Fusobacterium sp.
2_1_31]
Length = 190
Score = 188 bits (478), Expect = 2e-46, Method: Composition-based stats.
Identities = 53/166 (31%), Positives = 86/166 (51%), Gaps = 1/166 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+R+IGIDPG G+GI+D + V G I++ S RL +Y L ++K ++
Sbjct: 1 MRVIGIDPGTAIVGYGIIDYNKNKYSIVDYGVILTSKDLSNEERLEIVYNELDKILKKYK 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
PE A+E +F K+ + + QAR + +L+ IP+S Y P +K + G G +KK
Sbjct: 61 PEFMAIEDLFYFKNNKTVISVAQARGVILLAGKQNNIPMSSYTPLQVKIGITGYGKAEKK 120
Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHANSGYYKIASQD 169
Q+ +M++ + K DAADALAI + H +S + +
Sbjct: 121 QVQLMVQKFLGLSEIPKPDDAADALAICITHINSLSSNISFTGTSN 166
>gi|147677360|ref|YP_001211575.1| Holliday junction resolvase [Pelotomaculum thermopropionicum SI]
gi|189046070|sp|A5D3F9|RUVC_PELTS RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|146273457|dbj|BAF59206.1| holliday junction resolvasome, endonuclease subunit [Pelotomaculum
thermopropionicum SI]
Length = 164
Score = 188 bits (477), Expect = 3e-46, Method: Composition-based stats.
Identities = 64/154 (41%), Positives = 91/154 (59%), Gaps = 1/154 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ I+G+DPG TG+GIV+ AG+ V G I + A RL LY L ++IK R
Sbjct: 1 MLIMGVDPGTAITGYGIVEYAGNRFALVECGCIRTMPGVPPAERLQALYGELVEIIKRHR 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
PE AVE++F NK+ L +GQAR + +L+ A + +PV EY P +K+AV G G K
Sbjct: 61 PEHFAVEEIFFNKNTRTALTVGQARGVTVLAAAQSGLPVFEYTPLQVKQAVAGFGRAGKT 120
Query: 125 QIHMMLKMLMPESF-FKGKDAADALAIAVCHAYH 157
Q+ M+K ++ D ADALA+A+CHA+H
Sbjct: 121 QVQYMVKTILALPEVPAPDDVADALAVAICHAHH 154
>gi|307266571|ref|ZP_07548103.1| crossover junction endodeoxyribonuclease RuvC [Thermoanaerobacter
wiegelii Rt8.B1]
gi|306918425|gb|EFN48667.1| crossover junction endodeoxyribonuclease RuvC [Thermoanaerobacter
wiegelii Rt8.B1]
Length = 165
Score = 188 bits (477), Expect = 3e-46, Method: Composition-based stats.
Identities = 56/156 (35%), Positives = 95/156 (60%), Gaps = 1/156 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+R++GIDPG+ G+GI+D + + G + + A RL +Y G+ +IK++R
Sbjct: 1 MRVLGIDPGIAIMGYGIIDYKSNKFTVIDYGAVTTKAGIDKALRLHDIYNGIISLIKSYR 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ A+E++F NK+A + +G++R ++IL+ + I V EY P +K+AV+G G DK
Sbjct: 61 PDVVAIEELFYNKNAKTVITIGESRGVSILAAVNSGIKVFEYTPLQVKQAVVGYGRADKY 120
Query: 125 QIHMMLKMLMPESF-FKGKDAADALAIAVCHAYHAN 159
Q+ M+++L+ K D ADALA+A+CH + N
Sbjct: 121 QVQQMVRVLLNLEDVPKPDDVADALAVAICHCHSNN 156
>gi|300023945|ref|YP_003756556.1| crossover junction endodeoxyribonuclease RuvC [Hyphomicrobium
denitrificans ATCC 51888]
gi|299525766|gb|ADJ24235.1| crossover junction endodeoxyribonuclease RuvC [Hyphomicrobium
denitrificans ATCC 51888]
Length = 175
Score = 188 bits (477), Expect = 3e-46, Method: Composition-based stats.
Identities = 83/166 (50%), Positives = 115/166 (69%), Gaps = 1/166 (0%)
Query: 2 RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
++IRIIG DPGLRRTGWGIV+ G L +V+SG I LA+RL L++ +T VI+
Sbjct: 3 ARAIRIIGFDPGLRRTGWGIVESDGVRLVYVASGVITPPKDDDLAYRLSALFDAVTSVIQ 62
Query: 62 NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
++ P EAAVE+ FVN++ +TLKLGQAR +L+PA + V+EY PN IKK+V G GH
Sbjct: 63 SFSPSEAAVEETFVNENPRSTLKLGQARGAILLAPARLGLRVAEYTPNLIKKSVTGTGHA 122
Query: 122 DKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
+K+QI M+ L+P++ F D ADALAIA+ HA+H S ++A+
Sbjct: 123 EKQQIQAMISFLLPKATFDSADEADALAIAITHAHHR-SSRQRLAT 167
>gi|94309371|ref|YP_582581.1| Holliday junction resolvase [Cupriavidus metallidurans CH34]
gi|122988061|sp|Q1LRB4|RUVC_RALME RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|93353223|gb|ABF07312.1| component of RuvABC resolvasome, endonuclease [Cupriavidus
metallidurans CH34]
Length = 181
Score = 188 bits (477), Expect = 3e-46, Method: Composition-based stats.
Identities = 69/152 (45%), Positives = 99/152 (65%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPGLR TG+G+++ G+ L +V+SGTI S SL RL LY+G+++V + +
Sbjct: 1 MRILGIDPGLRTTGFGVLEKHGNKLAYVASGTIRSNGETSLPERLKTLYDGISEVARTYA 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ AA+E+VFVN + +TL LGQAR AI +PV EY +K AV+G G +K+
Sbjct: 61 PDCAAIEKVFVNVNPQSTLLLGQARGAAICGLVGQGLPVFEYTALQLKVAVVGYGRANKE 120
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
Q+ M+ L+ S DAADAL +A+CHA
Sbjct: 121 QVQEMVMRLLSLSGRPSSDAADALGVAICHAN 152
>gi|226311451|ref|YP_002771345.1| crossover junction endodeoxyribonuclease [Brevibacillus brevis NBRC
100599]
gi|254767462|sp|C0ZAN2|RUVC_BREBN RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|226094399|dbj|BAH42841.1| crossover junction endodeoxyribonuclease [Brevibacillus brevis NBRC
100599]
Length = 166
Score = 188 bits (477), Expect = 3e-46, Method: Composition-based stats.
Identities = 63/152 (41%), Positives = 93/152 (61%), Gaps = 1/152 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPG+ G+G+VD G L V G+I + + RL Q++E + +++ +R
Sbjct: 1 MRILGIDPGIAIVGFGVVDKEGSQLRPVQYGSIQTEAGLPVPLRLKQIFEAMQSLLETYR 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+E +VE++F NK+ +GQAR + IL+ LA +PV EY P +K+AV G G +KK
Sbjct: 61 PDEMSVEKLFFNKNVTTAFTVGQARGVIILAAELAGVPVYEYTPMQVKQAVTGYGGAEKK 120
Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHA 155
QI M K+L+ K D ADAL IA+ HA
Sbjct: 121 QIQEMTKLLLRLKEVPKPDDVADALGIAITHA 152
>gi|312143985|ref|YP_003995431.1| crossover junction endodeoxyribonuclease RuvC [Halanaerobium sp.
'sapolanicus']
gi|311904636|gb|ADQ15077.1| crossover junction endodeoxyribonuclease RuvC [Halanaerobium sp.
'sapolanicus']
Length = 165
Score = 188 bits (477), Expect = 3e-46, Method: Composition-based stats.
Identities = 62/153 (40%), Positives = 97/153 (63%), Gaps = 1/153 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPGL G+ +VD +N + G I + ++ RL ++ + ++IK ++
Sbjct: 1 MRILGIDPGLATIGYALVDKENNNFKVLEYGVIKTSADKTNIKRLEIIHRNIQELIKEFK 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
PE+ AVE++F NK+ +K+GQAR + +L+ A A I V+EY P IK+AV+G G DK+
Sbjct: 61 PEQMAVEELFFNKNVKTAIKVGQARGVILLAGAQAGIKVAEYTPLQIKQAVVGYGRADKR 120
Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAY 156
Q+ M+K L+ K DAADALAI++CH +
Sbjct: 121 QVQEMVKSLLNLVELPKPDDAADALAISICHGH 153
>gi|326390111|ref|ZP_08211672.1| crossover junction endodeoxyribonuclease RuvC [Thermoanaerobacter
ethanolicus JW 200]
gi|325993759|gb|EGD52190.1| crossover junction endodeoxyribonuclease RuvC [Thermoanaerobacter
ethanolicus JW 200]
Length = 165
Score = 188 bits (477), Expect = 3e-46, Method: Composition-based stats.
Identities = 56/156 (35%), Positives = 94/156 (60%), Gaps = 1/156 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+R++GIDPG+ G+GI+D + + G + + A RL +Y G+ +IK++
Sbjct: 1 MRVLGIDPGIAIMGYGIIDYKSNKFTVIDYGAVTTKAGIDKALRLHDIYNGIISLIKSYS 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ A+E++F NK+A + +G++R ++IL+ + I V EY P +K+AV+G G DK
Sbjct: 61 PDVVAIEELFYNKNAKTVITIGESRGVSILAAVNSGIKVFEYTPLQVKQAVVGYGRADKY 120
Query: 125 QIHMMLKMLMPESF-FKGKDAADALAIAVCHAYHAN 159
Q+ M+K+L+ K D ADALA+A+CH + N
Sbjct: 121 QVQQMVKVLLNLEEIPKPDDVADALAVAICHCHSNN 156
>gi|296132698|ref|YP_003639945.1| crossover junction endodeoxyribonuclease RuvC [Thermincola sp. JR]
gi|296031276|gb|ADG82044.1| crossover junction endodeoxyribonuclease RuvC [Thermincola potens
JR]
Length = 166
Score = 188 bits (477), Expect = 3e-46, Method: Composition-based stats.
Identities = 57/153 (37%), Positives = 95/153 (62%), Gaps = 1/153 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ I+G+DPG TG+G++ V G+ L VS G I + L RL ++ ++ +I+ ++
Sbjct: 1 MLILGVDPGTAITGYGLIRVQGNKLDAVSYGCIRTDAGLPLHQRLQKINSEISRLIREFK 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P A+E++F NK+ L +GQAR +A+L+ A A + ++EY P +K+AV+G G DK
Sbjct: 61 PTHFAIEELFFNKNTRTALSVGQARGVALLAAANAGLEIAEYTPLQVKQAVVGYGRADKN 120
Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAY 156
Q+ M+K ++ K D ADALA+A+CH++
Sbjct: 121 QVQYMVKTILCLPEIPKPDDTADALAVAICHSH 153
>gi|197119679|ref|YP_002140106.1| Holliday junction resolvase [Geobacter bemidjiensis Bem]
gi|226698755|sp|B5EAH1|RUVC_GEOBB RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|197089039|gb|ACH40310.1| crossover junction endodeoxyribonuclease RuvC [Geobacter
bemidjiensis Bem]
Length = 164
Score = 187 bits (476), Expect = 4e-46, Method: Composition-based stats.
Identities = 65/155 (41%), Positives = 99/155 (63%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ I+GIDPG R+TG+GI+ G+ L V +G I + + RL +++ GL+++I +R
Sbjct: 1 MIILGIDPGSRKTGYGIISKQGNRLIHVDNGAIFTQSAKDFPERLEKIFTGLSEIIAQYR 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
PE AVE VF+ K+A + LKLGQAR AI++ +PV EY +K+AV+G G +K
Sbjct: 61 PEVVAVEDVFLAKNAQSALKLGQARGAAIVAAVNVGLPVHEYTAMQVKQAVVGTGRAEKA 120
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHAN 159
Q+ M+K L+ +DA+DALA+A+CHA+ A
Sbjct: 121 QVQQMIKALLNLPEVAQEDASDALAVAICHAHSAG 155
>gi|303230210|ref|ZP_07316978.1| crossover junction endodeoxyribonuclease RuvC [Veillonella atypica
ACS-134-V-Col7a]
gi|302515136|gb|EFL57110.1| crossover junction endodeoxyribonuclease RuvC [Veillonella atypica
ACS-134-V-Col7a]
Length = 165
Score = 187 bits (476), Expect = 4e-46, Method: Composition-based stats.
Identities = 62/157 (39%), Positives = 95/157 (60%), Gaps = 1/157 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RIIGIDPG G+GI+DV G L V+ G I + + A RL L+ L+D+++ ++
Sbjct: 1 MRIIGIDPGTAICGYGIIDVQGSKLTPVAYGAITTPKELTDAQRLEILFNDLSDILEEYK 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P++ VE++F N++ +K+GQAR I +L+ RIP+ EY P IK+AV G G DK
Sbjct: 61 PDKFGVEELFFNRNVTTAIKVGQARGIILLAAEQQRIPIYEYTPLQIKQAVTGYGKADKN 120
Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHANS 160
Q+ M ++ K D ADALA+A+C A+ ++
Sbjct: 121 QVIYMTMNILGIREKIKPDDTADALAVAICTAHSSHQ 157
>gi|253997452|ref|YP_003049516.1| Holliday junction resolvase [Methylotenera mobilis JLW8]
gi|253984131|gb|ACT48989.1| crossover junction endodeoxyribonuclease RuvC [Methylotenera
mobilis JLW8]
Length = 192
Score = 187 bits (476), Expect = 4e-46, Method: Composition-based stats.
Identities = 70/177 (39%), Positives = 107/177 (60%), Gaps = 12/177 (6%)
Query: 3 KSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVS-----------CVRQSLAFRLCQ 51
+IRI+GIDPGLR TG+G+++ G+ + +VSSGTI + R+ L RL
Sbjct: 6 SAIRILGIDPGLRLTGFGVIEKIGEKITYVSSGTIKTASAKKSKVEGDPEREELPARLKV 65
Query: 52 LYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTI 111
+ +GL +VI ++P + A+E+VFVN + +TL LGQAR AI + + + V+EY +
Sbjct: 66 ILDGLFEVIDTYQPHQVAIEKVFVNVNPQSTLLLGQARGAAISAAVIRNLSVAEYTALQV 125
Query: 112 KKAVIGVGHGDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
K+AV+G GH K+Q+ M+K L+ D+ADALA A+CHA+ G +A+
Sbjct: 126 KQAVVGNGHAQKEQVQEMVKRLLKLPAAPKPDSADALACAICHAH-GGQGLGLMATA 181
>gi|254463445|ref|ZP_05076861.1| crossover junction endodeoxyribonuclease RuvC [Rhodobacterales
bacterium HTCC2083]
gi|206680034|gb|EDZ44521.1| crossover junction endodeoxyribonuclease RuvC [Rhodobacteraceae
bacterium HTCC2083]
Length = 225
Score = 187 bits (476), Expect = 4e-46, Method: Composition-based stats.
Identities = 80/159 (50%), Positives = 107/159 (67%), Gaps = 1/159 (0%)
Query: 2 RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
S+R++GIDPGLR GWG+++V G + + +G + L RL L+ LTDV+
Sbjct: 55 ASSMRVLGIDPGLRNMGWGVIEVDGSRMRHLGNGVCK-SEGKDLGLRLLSLHRQLTDVLC 113
Query: 62 NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
++P AAVEQ FVNKD TLKLGQAR IA+L PA A + + EYAPN +KK V+GVGH
Sbjct: 114 EFQPTTAAVEQTFVNKDGAGTLKLGQARGIALLVPAQAGLEIGEYAPNKVKKTVVGVGHA 173
Query: 122 DKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
K+Q+ M+K+ +P KG DAADALAIA+CHA++ S
Sbjct: 174 AKEQVQHMVKLQLPGVVLKGPDAADALAIAMCHAHYTRS 212
>gi|258514396|ref|YP_003190618.1| Holliday junction resolvase [Desulfotomaculum acetoxidans DSM 771]
gi|257778101|gb|ACV61995.1| crossover junction endodeoxyribonuclease RuvC [Desulfotomaculum
acetoxidans DSM 771]
Length = 159
Score = 187 bits (475), Expect = 5e-46, Method: Composition-based stats.
Identities = 58/156 (37%), Positives = 92/156 (58%), Gaps = 1/156 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ I+G+DPG TG+G+V G+ V I + + A RL LY L ++ +R
Sbjct: 1 MIILGVDPGTAITGYGLVSFHGNRFSTVEYNCIKTPAKMEPADRLLILYRELEKILLKYR 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ AVE++F N +A L +GQAR + +L A+A + V EY P +K+AV+G G +K+
Sbjct: 61 PDRMAVEKLFFNTNARTALAVGQARGVVLLLGAMAGLRVYEYTPLEVKQAVVGYGRAEKE 120
Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHAN 159
Q+ M+K ++ + D ADALA+A+CHA++ N
Sbjct: 121 QVQYMVKAILCLPEIPRPDDVADALAVAICHAHYGN 156
>gi|302872059|ref|YP_003840695.1| crossover junction endodeoxyribonuclease RuvC [Caldicellulosiruptor
obsidiansis OB47]
gi|302574918|gb|ADL42709.1| crossover junction endodeoxyribonuclease RuvC [Caldicellulosiruptor
obsidiansis OB47]
Length = 166
Score = 187 bits (475), Expect = 5e-46, Method: Composition-based stats.
Identities = 55/162 (33%), Positives = 91/162 (56%), Gaps = 2/162 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R++GIDPG+ TG+GI++ G + G I + + R LY L +I +
Sbjct: 1 MRVLGIDPGIALTGYGIIESKNGSEFKVIDYGKIETSSSFKKSMRFLHLYTELCSIISLY 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
+P+ A+E++F NK++ + +G+AR + IL+ + V EY P +K+++ G G DK
Sbjct: 61 QPDVVAIEELFFNKNSKTAITIGEARGVIILTCIQNNLSVYEYTPLQVKQSITGYGRADK 120
Query: 124 KQIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHANSGYYK 164
QI M+K L+ K D ADALA+A+CH ++S Y+
Sbjct: 121 TQIQKMVKSLLGLSEIPKPDDVADALAVAMCHILSSSSVLYQ 162
>gi|241662012|ref|YP_002980372.1| Holliday junction resolvase [Ralstonia pickettii 12D]
gi|240864039|gb|ACS61700.1| crossover junction endodeoxyribonuclease RuvC [Ralstonia pickettii
12D]
Length = 181
Score = 187 bits (474), Expect = 6e-46, Method: Composition-based stats.
Identities = 66/163 (40%), Positives = 101/163 (61%), Gaps = 1/163 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPGLR TG+G+++ G L +V+SGTI S L RL LY+G+++++ +R
Sbjct: 1 MRILGIDPGLRTTGFGVLERHGHKLVYVASGTIKSNGNADLPSRLKTLYDGVSELVSTYR 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ A++E+VFVN + +TL LGQAR I +PV EY +K+AV+G G +K
Sbjct: 61 PDCASIEKVFVNVNPQSTLLLGQARGAVICGLMSGNLPVFEYTALQLKQAVVGYGRANKD 120
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
Q+ M+ L+ + G DA+DAL +A+CHA+ +A
Sbjct: 121 QVQEMVVRLLNLAGRPGADASDALGVAICHAH-GGETLAAMAG 162
>gi|297544490|ref|YP_003676792.1| crossover junction endodeoxyribonuclease RuvC [Thermoanaerobacter
mathranii subsp. mathranii str. A3]
gi|296842265|gb|ADH60781.1| crossover junction endodeoxyribonuclease RuvC [Thermoanaerobacter
mathranii subsp. mathranii str. A3]
Length = 165
Score = 187 bits (474), Expect = 7e-46, Method: Composition-based stats.
Identities = 57/156 (36%), Positives = 95/156 (60%), Gaps = 1/156 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+R++GIDPG+ G+GI+D + + G + + A RL +Y G+T +IK++
Sbjct: 1 MRVLGIDPGIATMGYGIIDYKSNKFTVIDYGAVTTKAGIDKALRLHDIYNGITSLIKSYC 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ A+E++F NK+A + +G++R ++IL+ + I V EY P +K+AV+G G DK
Sbjct: 61 PDVVAIEELFYNKNAKTVITIGESRGVSILAAVNSGIKVFEYTPLQVKQAVVGYGKADKH 120
Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHAN 159
Q+ M+K+L+ K D ADALA+A+CH + N
Sbjct: 121 QVQQMVKVLLNLDQIPKPDDVADALAVAICHCHSNN 156
>gi|167629897|ref|YP_001680396.1| crossover junction endodeoxyribonuclease ruvc [Heliobacterium
modesticaldum Ice1]
gi|238687887|sp|B0TF68|RUVC_HELMI RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|167592637|gb|ABZ84385.1| crossover junction endodeoxyribonuclease ruvc [Heliobacterium
modesticaldum Ice1]
Length = 162
Score = 186 bits (473), Expect = 7e-46, Method: Composition-based stats.
Identities = 57/154 (37%), Positives = 95/154 (61%), Gaps = 1/154 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ I+GIDPG G+G+++V G+ L ++ G + + S A RL ++ L +I +R
Sbjct: 1 MVILGIDPGTAICGYGLIEVQGNRLSALAYGAVRTPAHTSQASRLQTIFTDLEAIIATYR 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P AVE++F N++ L +GQAR + +L+ A A + V EY P+ +K+AV+G G +K+
Sbjct: 61 PTHVAVEELFFNRNVTTALTVGQARGVILLAAARAGLSVHEYKPSQVKQAVVGYGRAEKQ 120
Query: 125 QIHMMLKMLM-PESFFKGKDAADALAIAVCHAYH 157
Q+ M+++L+ E K D ADALA+A+C A+
Sbjct: 121 QVQQMVRVLLALEEIPKPDDVADALAVAICCAHS 154
>gi|17545222|ref|NP_518624.1| Holliday junction resolvase [Ralstonia solanacearum GMI1000]
gi|20978746|sp|Q8Y233|RUVC_RALSO RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|17427513|emb|CAD14031.1| probable crossover junction endodeoxyribonuclease ruvc
(hollidayjunction nuclease ruvc) (holliday juction
resolvase ruvc) protein [Ralstonia solanacearum GMI1000]
Length = 181
Score = 186 bits (473), Expect = 7e-46, Method: Composition-based stats.
Identities = 67/163 (41%), Positives = 101/163 (61%), Gaps = 1/163 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPGLR TG+G+++ G L +V+SGTI S L RL LY+G++++++ +R
Sbjct: 1 MRILGIDPGLRTTGFGVLERHGHQLVYVASGTIKSDGNADLPSRLKTLYDGVSELVRTYR 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ A++E+VFVN + +TL LGQAR I +PV EY +K+AV+G G +K
Sbjct: 61 PDCASIEKVFVNVNPQSTLLLGQARGAVICGLMSGNLPVFEYTALQLKQAVVGYGRANKD 120
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
Q+ M+ L+ G DAADAL +A+CHA+ +A
Sbjct: 121 QVQDMVVRLLNLEGRPGTDAADALGVAICHAH-GGETLAAMAG 162
>gi|256027132|ref|ZP_05440966.1| crossover junction endodeoxyribonuclease ruvC [Fusobacterium sp.
D11]
gi|260497919|ref|ZP_05816037.1| crossover junction endodeoxyribonuclease RuvC [Fusobacterium sp.
3_1_33]
gi|289765113|ref|ZP_06524491.1| crossover junction endodeoxyribonuclease ruvC [Fusobacterium sp.
D11]
gi|260196534|gb|EEW94063.1| crossover junction endodeoxyribonuclease RuvC [Fusobacterium sp.
3_1_33]
gi|289716668|gb|EFD80680.1| crossover junction endodeoxyribonuclease ruvC [Fusobacterium sp.
D11]
Length = 190
Score = 186 bits (473), Expect = 8e-46, Method: Composition-based stats.
Identities = 52/159 (32%), Positives = 81/159 (50%), Gaps = 1/159 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+R+IGIDPG G+GI+D + V G I++ S RL +Y + ++K ++
Sbjct: 1 MRVIGIDPGTAIVGYGIIDYDKNKYSVVDYGVILTSKDLSTEERLEVIYNNMDKILKKYK 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
PE A+E +F K+ + + QAR + +L IP+S Y P +K + G G +KK
Sbjct: 61 PEFMAIEDLFYFKNNKTVISVAQARGVILLVGKQNNIPMSNYTPLQVKIGITGYGKAEKK 120
Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHANSGY 162
Q+ M++ + K DAADALAI + H S
Sbjct: 121 QVQQMVQKFLGLSEIPKPDDAADALAICITHINSLGSKL 159
>gi|329916097|ref|ZP_08276356.1| Crossover junction endodeoxyribonuclease RuvC [Oxalobacteraceae
bacterium IMCC9480]
gi|327544766|gb|EGF30172.1| Crossover junction endodeoxyribonuclease RuvC [Oxalobacteraceae
bacterium IMCC9480]
Length = 180
Score = 186 bits (473), Expect = 8e-46, Method: Composition-based stats.
Identities = 64/154 (41%), Positives = 103/154 (66%), Gaps = 1/154 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPGLR TG+G+++ G L +++SGTI + + L RL + G+++V+ +R
Sbjct: 1 MRILGIDPGLRITGFGVIEKHGHKLSYIASGTIKT-LDIDLPARLKTILAGVSEVVATYR 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ +A+E+VFVN + +TL LGQAR AI + A + V+EY +K+AV+G G K+
Sbjct: 60 PDCSAIEKVFVNVNPQSTLLLGQARGAAICALVSADLLVAEYTALQVKQAVVGQGKAQKE 119
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHA 158
Q+ M++ L+ S DAADAL +A+CHA+++
Sbjct: 120 QVQDMVQRLLMLSGKPTADAADALGVAICHAHNS 153
>gi|325290233|ref|YP_004266414.1| Crossover junction endodeoxyribonuclease ruvC [Syntrophobotulus
glycolicus DSM 8271]
gi|324965634|gb|ADY56413.1| Crossover junction endodeoxyribonuclease ruvC [Syntrophobotulus
glycolicus DSM 8271]
Length = 156
Score = 186 bits (473), Expect = 8e-46, Method: Composition-based stats.
Identities = 53/156 (33%), Positives = 84/156 (53%), Gaps = 1/156 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ I+GIDPG TG+G+++ G + V + + RL L E L +V+ +
Sbjct: 1 MLILGIDPGTATTGYGLIEKTGQKITPVEYSCWRTPAGLPMPQRLLMLSEFLEEVLGKYS 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P VE++F N++ + +GQAR + +L+ A +IP EY P +K+AV G G K+
Sbjct: 61 PSHLVVEELFFNRNVTTVISVGQARGVILLAAAKYKIPAYEYTPLQVKQAVAGYGKATKQ 120
Query: 125 QIHMMLKMLMPESF-FKGKDAADALAIAVCHAYHAN 159
Q+ M+K ++ K D ADALAI +CHA+
Sbjct: 121 QVQYMVKAILGLKECPKPDDTADALAIGICHAFTIR 156
>gi|19703559|ref|NP_603121.1| Holliday junction resolvase [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
gi|296327632|ref|ZP_06870175.1| crossover junction endoribonuclease subunit C [Fusobacterium
nucleatum subsp. nucleatum ATCC 23726]
gi|22096144|sp|Q8RGS0|RUVC_FUSNN RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|19713657|gb|AAL94420.1| Crossover junction endodeoxyribonuclease ruvC [Fusobacterium
nucleatum subsp. nucleatum ATCC 25586]
gi|296155222|gb|EFG95996.1| crossover junction endoribonuclease subunit C [Fusobacterium
nucleatum subsp. nucleatum ATCC 23726]
Length = 190
Score = 186 bits (473), Expect = 8e-46, Method: Composition-based stats.
Identities = 50/160 (31%), Positives = 82/160 (51%), Gaps = 1/160 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+R+IGIDPG G+GI+D + V G +++ S RL +Y+ + ++K ++
Sbjct: 1 MRVIGIDPGTAIVGYGIIDYDKNKYSIVDYGVVLTSKDLSTEERLEIVYDEIDKILKKYK 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
PE A+E +F K+ + + QAR + +L+ I ++ Y P +K + G G +KK
Sbjct: 61 PEFMAIEDLFYFKNNKTVISVAQARGVILLAGKQNNIAMTSYTPLQVKIGITGYGKAEKK 120
Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHANSGYY 163
QI M++ + K DAADALAI + H S
Sbjct: 121 QIQQMVQKFLGLSEIPKPDDAADALAICITHINSLGSKLS 160
>gi|39996177|ref|NP_952128.1| Holliday junction resolvase [Geobacter sulfurreducens PCA]
gi|81702837|sp|Q74E88|RUVC_GEOSL RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|39982942|gb|AAR34401.1| crossover junction endodeoxyribonuclease RuvC [Geobacter
sulfurreducens PCA]
gi|298505191|gb|ADI83914.1| crossover junction endodeoxyribonuclease RuvC [Geobacter
sulfurreducens KN400]
Length = 164
Score = 186 bits (473), Expect = 9e-46, Method: Composition-based stats.
Identities = 72/154 (46%), Positives = 103/154 (66%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+R++GIDPG R TG+GI++ G+ L V +G I + + A RL ++YEGL+ VI+ +R
Sbjct: 1 MRVLGIDPGSRITGYGIIEKIGNRLVHVDNGAIHTDSHREFALRLHKIYEGLSRVIEEYR 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ AVEQVF+ +A + LKLGQAR AI++ A +PVSEY +K+AV+G GH K+
Sbjct: 61 PDAMAVEQVFLAHNAQSALKLGQARGAAIVAGVSAGLPVSEYTAMQVKQAVVGYGHARKE 120
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHA 158
Q+ M+K L+ DA+DALA+AVCHA A
Sbjct: 121 QVQQMVKSLLNLPEIAQADASDALAVAVCHANSA 154
>gi|282882970|ref|ZP_06291574.1| crossover junction endodeoxyribonuclease RuvC [Peptoniphilus
lacrimalis 315-B]
gi|281297177|gb|EFA89669.1| crossover junction endodeoxyribonuclease RuvC [Peptoniphilus
lacrimalis 315-B]
Length = 164
Score = 186 bits (473), Expect = 9e-46, Method: Composition-based stats.
Identities = 55/151 (36%), Positives = 90/151 (59%), Gaps = 1/151 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPGL G+GI+D G++ VS G I + + + RL +Y ++++I ++
Sbjct: 1 MRILGIDPGLAIIGYGILDFKGNSFKTVSYGQINTPAKTPITDRLEMIYSQMSELIIKFK 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P++ A E++F NK+ + + QAR + +L+ V EY P IKK+++G G K+
Sbjct: 61 PDDIAFEELFFNKNVKTAITVAQARGVEVLAARQFTRNVYEYTPLQIKKSLVGYGRATKE 120
Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCH 154
QI M+K+L+ K D ADALA+A+ H
Sbjct: 121 QIQYMVKVLLNLNEVPKPDDVADALAVAITH 151
>gi|56477501|ref|YP_159090.1| Holliday junction resolvase [Aromatoleum aromaticum EbN1]
gi|56313544|emb|CAI08189.1| Crossover junction endodeoxyribonuclease RuvC [Aromatoleum
aromaticum EbN1]
Length = 203
Score = 186 bits (472), Expect = 1e-45, Method: Composition-based stats.
Identities = 65/163 (39%), Positives = 96/163 (58%), Gaps = 1/163 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
RI+G+DPGLR TG+G++D G+ L +V+SG I + L RL L +G+ +V+ + P
Sbjct: 29 RILGLDPGLRITGFGVIDKLGNQLRYVASGCIRTR-DGELPGRLKTLLDGVREVVAAYTP 87
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
++ AVE+VFVN + +TL LGQAR I +PV EY +K+AV+G G K+Q
Sbjct: 88 DQVAVEKVFVNVNPQSTLLLGQARGAVICGAVSCDLPVHEYTALQVKQAVVGYGKAAKEQ 147
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
+ M++ L+ DAADALA A+CHA+ A +
Sbjct: 148 VQHMVQRLLALDGCPSPDAADALACAICHAHGGQGTAGAFAGR 190
>gi|113866529|ref|YP_725018.1| Holliday junction resolvase [Ralstonia eutropha H16]
gi|123033273|sp|Q0KEC1|RUVC_RALEH RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|113525305|emb|CAJ91650.1| crossover junction endodeoxyribonuclease RuvC [Ralstonia eutropha
H16]
Length = 181
Score = 186 bits (472), Expect = 1e-45, Method: Composition-based stats.
Identities = 68/152 (44%), Positives = 98/152 (64%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPGLR TG+G+++ G+ L +V+SGTI S +L RL LY+G+++V + +
Sbjct: 1 MRILGIDPGLRTTGFGVIEKHGNKLAYVASGTIKSDGNSTLPERLKTLYDGISEVSRTYA 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ AA+E+VFVN + +TL LGQAR AI +PV EY +K AV+G G +K
Sbjct: 61 PDCAAIEKVFVNVNPQSTLLLGQARGAAICGLVGYGLPVFEYTALQLKVAVVGYGRANKA 120
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
Q+ M+ L+ G DAADAL +A+CHA
Sbjct: 121 QVQEMVTRLLMLPGQPGSDAADALGVAICHAN 152
>gi|253699568|ref|YP_003020757.1| Holliday junction resolvase [Geobacter sp. M21]
gi|259495688|sp|C6E1T0|RUVC_GEOSM RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|251774418|gb|ACT16999.1| crossover junction endodeoxyribonuclease RuvC [Geobacter sp. M21]
Length = 164
Score = 186 bits (472), Expect = 1e-45, Method: Composition-based stats.
Identities = 65/155 (41%), Positives = 99/155 (63%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ I+GIDPG R+TG+GI+ G+ L V +G I + + RL +++ GL+++I +R
Sbjct: 1 MIILGIDPGSRKTGYGIISKQGNRLIHVDNGAIFTQSAKDFPERLEKIFTGLSEIIAQYR 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
PE AVE VF+ K+A + LKLGQAR AI++ +PV EY +K+AV+G G +K
Sbjct: 61 PEVVAVEDVFLAKNAQSALKLGQARGAAIVAAVNVGLPVHEYTAMQVKQAVVGTGRAEKA 120
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHAN 159
Q+ M+K L+ +DA+DALA+A+CHA+ A
Sbjct: 121 QVQQMIKALLNLPEVAQEDASDALAVAICHAHSAG 155
>gi|300813218|ref|ZP_07093586.1| crossover junction endodeoxyribonuclease RuvC [Peptoniphilus sp.
oral taxon 836 str. F0141]
gi|300512671|gb|EFK39803.1| crossover junction endodeoxyribonuclease RuvC [Peptoniphilus sp.
oral taxon 836 str. F0141]
Length = 164
Score = 186 bits (472), Expect = 1e-45, Method: Composition-based stats.
Identities = 55/151 (36%), Positives = 90/151 (59%), Gaps = 1/151 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPGL G+GI+D G++ VS G I + + + RL +Y ++++I ++
Sbjct: 1 MRILGIDPGLAIIGYGILDFKGNSFKTVSYGQINTPAKTPITDRLDMIYSQMSELIIKFK 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P++ A E++F NK+ + + QAR + +L+ V EY P IKK+++G G K+
Sbjct: 61 PDDIAFEELFFNKNVKTAITVAQARGVEVLAARQFTRNVYEYTPLQIKKSLVGYGRATKE 120
Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCH 154
QI M+K+L+ K D ADALA+A+ H
Sbjct: 121 QIQYMVKVLLNLKEVPKPDDVADALAVAITH 151
>gi|188591244|ref|YP_001795844.1| holliday junction resolvase [Cupriavidus taiwanensis LMG 19424]
gi|238692934|sp|B2AH75|RUVC_CUPTR RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|170938138|emb|CAP63124.1| endodeoxyribonuclease, subunit C of RuvABC Holliday junction
resolvasome [Cupriavidus taiwanensis LMG 19424]
Length = 181
Score = 186 bits (472), Expect = 1e-45, Method: Composition-based stats.
Identities = 67/152 (44%), Positives = 98/152 (64%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPGLR TG+G+++ G+ L +++SGTI S +L RL LY+G+++V + +
Sbjct: 1 MRILGIDPGLRTTGFGVIEKQGNKLAYIASGTIKSDGNANLPERLKTLYDGISEVSRTYA 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ AA+E+VFVN + +TL LGQAR AI +PV EY +K AV+G G +K
Sbjct: 61 PDCAAIEKVFVNVNPQSTLLLGQARGAAICGLVGYGLPVFEYTALQLKVAVVGYGRANKA 120
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
Q+ M+ L+ G DAADAL +A+CHA
Sbjct: 121 QVQEMVTRLLMLPGQPGSDAADALGVAICHAN 152
>gi|134093538|ref|YP_001098613.1| Holliday junction resolvase [Herminiimonas arsenicoxydans]
gi|166233198|sp|A4G1U7|RUVC_HERAR RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|133737441|emb|CAL60484.1| Crossover junction endodeoxyribonuclease ruvC (Holliday junction
nuclease ruvC) (Holliday juction resolvase ruvC)
[Herminiimonas arsenicoxydans]
Length = 180
Score = 186 bits (472), Expect = 1e-45, Method: Composition-based stats.
Identities = 64/154 (41%), Positives = 99/154 (64%), Gaps = 1/154 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
++I+GIDPGLR TG+G+++ G+ L +++SGTI + L RL + + +VI ++
Sbjct: 1 MKILGIDPGLRTTGFGVIEKQGNKLSYIASGTIKTP-DADLPQRLKTILVSVAEVIATYK 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ AA+E+VFVN + +TL LGQAR AI + A + V+EY +K+AV+G G K
Sbjct: 60 PDCAAIEKVFVNVNPQSTLLLGQARGAAICALVGADLFVAEYTALQVKQAVVGQGKAQKA 119
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHA 158
Q+ M++ L+ S G DAADAL +A+CHA+
Sbjct: 120 QVQDMVQRLLKLSGLPGTDAADALGVAICHAHSG 153
>gi|237741150|ref|ZP_04571631.1| crossover junction endodeoxyribonuclease ruvC [Fusobacterium sp.
4_1_13]
gi|256846283|ref|ZP_05551740.1| crossover junction endodeoxyribonuclease RuvC [Fusobacterium sp.
3_1_36A2]
gi|294784633|ref|ZP_06749922.1| crossover junction endodeoxyribonuclease RuvC [Fusobacterium sp.
3_1_27]
gi|229430682|gb|EEO40894.1| crossover junction endodeoxyribonuclease ruvC [Fusobacterium sp.
4_1_13]
gi|256718052|gb|EEU31608.1| crossover junction endodeoxyribonuclease RuvC [Fusobacterium sp.
3_1_36A2]
gi|294487849|gb|EFG35208.1| crossover junction endodeoxyribonuclease RuvC [Fusobacterium sp.
3_1_27]
Length = 190
Score = 186 bits (472), Expect = 1e-45, Method: Composition-based stats.
Identities = 50/160 (31%), Positives = 81/160 (50%), Gaps = 1/160 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+R+IGIDPG G+GI+D + V G +++ S RL +Y + ++K ++
Sbjct: 1 MRVIGIDPGTAIVGYGIIDYDKNKYSIVDYGVVLTSKDLSTEERLEIVYSEIDKILKKYK 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
PE A+E +F K+ + + QAR + +L+ I +S Y P +K + G G +KK
Sbjct: 61 PEFMAIEDLFYFKNNKTVISVAQARGVILLAGKQNNIAMSSYTPLQVKIGITGYGKAEKK 120
Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHANSGYY 163
Q+ M++ + K DAADALAI + H S
Sbjct: 121 QVQQMVQKFLGLSEIPKPDDAADALAICITHINSLGSKLS 160
>gi|34763629|ref|ZP_00144559.1| Crossover junction endodeoxyribonuclease ruvC [Fusobacterium
nucleatum subsp. vincentii ATCC 49256]
gi|27886706|gb|EAA23849.1| Crossover junction endodeoxyribonuclease ruvC [Fusobacterium
nucleatum subsp. vincentii ATCC 49256]
Length = 190
Score = 186 bits (472), Expect = 1e-45, Method: Composition-based stats.
Identities = 50/160 (31%), Positives = 81/160 (50%), Gaps = 1/160 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+R+IGIDPG G+GI+D + V G +++ S RL +Y + ++K ++
Sbjct: 1 MRVIGIDPGTAIVGYGIIDYDKNKYSIVDYGVVLTSKDLSTEERLEIVYSEIDKILKKYK 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
PE A+E +F K+ + + QAR + +L+ I +S Y P +K + G G +KK
Sbjct: 61 PEFMAIEDLFYFKNNKTVISVAQARGVILLAGKQNNIAMSSYTPLQVKIGITGYGKAEKK 120
Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHANSGYY 163
Q+ M++ + K DAADALAI + H S
Sbjct: 121 QVQQMVQKFLGLSEIPKPDDAADALAICITHINSLGSKLS 160
>gi|289578209|ref|YP_003476836.1| crossover junction endodeoxyribonuclease RuvC [Thermoanaerobacter
italicus Ab9]
gi|289527922|gb|ADD02274.1| crossover junction endodeoxyribonuclease RuvC [Thermoanaerobacter
italicus Ab9]
Length = 165
Score = 186 bits (472), Expect = 1e-45, Method: Composition-based stats.
Identities = 57/156 (36%), Positives = 94/156 (60%), Gaps = 1/156 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+R++GIDPG+ G+GI+D + + G + + A RL +Y G+T +IK++
Sbjct: 1 MRVLGIDPGIATMGYGIIDYKFNKFTVIDYGAVTTKAGIDKALRLHDIYNGITSLIKSYC 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ A+E++F NK+A + +G++R + IL+ + I V EY P +K+AV+G G DK
Sbjct: 61 PDVVAIEELFYNKNAKTVITIGESRGVCILAAVNSGIKVFEYTPLQVKQAVVGYGKADKH 120
Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHAN 159
Q+ M+K+L+ K D ADALA+A+CH + N
Sbjct: 121 QVQQMVKVLLNLDQIPKPDDVADALAVAICHCHSNN 156
>gi|299067937|emb|CBJ39151.1| endodeoxyribonuclease, subunit C of RuvABC Holliday junction
resolvasome [Ralstonia solanacearum CMR15]
Length = 181
Score = 186 bits (472), Expect = 1e-45, Method: Composition-based stats.
Identities = 67/163 (41%), Positives = 101/163 (61%), Gaps = 1/163 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPGLR TG+G+++ G L +V+SGTI S L RL LY+G++++++ +R
Sbjct: 1 MRILGIDPGLRTTGFGVLERHGHQLVYVASGTIKSDGNADLPSRLKTLYDGVSELVRIYR 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ A++E+VFVN + +TL LGQAR I +PV EY +K+AV+G G +K
Sbjct: 61 PDCASIEKVFVNVNPQSTLLLGQARGAVICGLMSGNLPVFEYTALQLKQAVVGYGRANKD 120
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
Q+ M+ L+ G DAADAL +A+CHA+ +A
Sbjct: 121 QVQDMVVRLLNLEGRPGTDAADALGVAICHAH-GGETLAAMAG 162
>gi|325981221|ref|YP_004293623.1| Crossover junction endodeoxyribonuclease ruvC [Nitrosomonas sp.
AL212]
gi|325530740|gb|ADZ25461.1| Crossover junction endodeoxyribonuclease ruvC [Nitrosomonas sp.
AL212]
Length = 172
Score = 186 bits (472), Expect = 1e-45, Method: Composition-based stats.
Identities = 73/163 (44%), Positives = 105/163 (64%), Gaps = 2/163 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPGL TG+G++D G NL +VSSG++ + + L FRL + + L+++I +R
Sbjct: 1 MRILGIDPGLCITGFGVIDKNGSNLTYVSSGSVKTSKGE-LPFRLKLILDNLSEIINRYR 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ ++EQVFVN + +TL LGQAR AI + + + V+EY IK+AV+G GH K
Sbjct: 60 PQHVSIEQVFVNINPKSTLLLGQARGAAICAAVMNDLTVAEYTALQIKQAVVGNGHAKKD 119
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
Q+ M+ L+ S G DAADALA A+CHA G KIA+
Sbjct: 120 QVQEMVVRLLKLSGSPGTDAADALACAICHAN-GGLGLGKIAT 161
>gi|152979958|ref|YP_001351999.1| Holliday junction resolvase [Janthinobacterium sp. Marseille]
gi|166233199|sp|A6SUQ2|RUVC_JANMA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|151280035|gb|ABR88445.1| crossover junction endodeoxyribonuclease [Janthinobacterium sp.
Marseille]
Length = 180
Score = 186 bits (472), Expect = 1e-45, Method: Composition-based stats.
Identities = 64/154 (41%), Positives = 99/154 (64%), Gaps = 1/154 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
++I+GIDPGLR TG+G+++ G+ L +++SGTI + L RL + +++VI +
Sbjct: 1 MKILGIDPGLRTTGFGVIEKHGNKLTYIASGTIKTP-DADLPQRLKTILSSVSEVIATYH 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ AA+E+VFVN + +TL LGQAR AI + A + V+EY +K+AV+G G K
Sbjct: 60 PDCAAIEKVFVNVNPQSTLLLGQARGAAICALVHADLLVAEYTALQVKQAVVGQGKAQKA 119
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHA 158
Q+ M++ L+ S G DAADAL +A+CHA+
Sbjct: 120 QVQDMVQRLLKLSGLPGTDAADALGVAICHAHSG 153
>gi|237746838|ref|ZP_04577318.1| crossover junction endodeoxyribonuclease ruvC [Oxalobacter
formigenes HOxBLS]
gi|229378189|gb|EEO28280.1| crossover junction endodeoxyribonuclease ruvC [Oxalobacter
formigenes HOxBLS]
Length = 181
Score = 185 bits (471), Expect = 1e-45, Method: Composition-based stats.
Identities = 64/152 (42%), Positives = 100/152 (65%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
++I+GIDPGLR TG+GI+ G+ L +++SGT+ + L RL +++G+ ++I +R
Sbjct: 1 MKILGIDPGLRTTGFGIIHKKGNALHYIASGTVKTPAEAGLPLRLKTIFDGVNEIITQYR 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ AA+E+VFVN + +TL LGQAR AI + + + V E+ IK+AV+G G KK
Sbjct: 61 PDCAAIEKVFVNVNPQSTLLLGQARGAAISALVASELAVYEFTALQIKQAVVGHGKAQKK 120
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
Q+ M++ L+ G DAADAL +A+CHA+
Sbjct: 121 QVQEMVQRLLSLPGIPGSDAADALGVAICHAH 152
>gi|97274509|sp|Q5P3C5|RUVC_AZOSE RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
Length = 185
Score = 185 bits (471), Expect = 1e-45, Method: Composition-based stats.
Identities = 65/163 (39%), Positives = 96/163 (58%), Gaps = 1/163 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
RI+G+DPGLR TG+G++D G+ L +V+SG I + L RL L +G+ +V+ + P
Sbjct: 11 RILGLDPGLRITGFGVIDKLGNQLRYVASGCIRTR-DGELPGRLKTLLDGVREVVAAYTP 69
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
++ AVE+VFVN + +TL LGQAR I +PV EY +K+AV+G G K+Q
Sbjct: 70 DQVAVEKVFVNVNPQSTLLLGQARGAVICGAVSCDLPVHEYTALQVKQAVVGYGKAAKEQ 129
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
+ M++ L+ DAADALA A+CHA+ A +
Sbjct: 130 VQHMVQRLLALDGCPSPDAADALACAICHAHGGQGTAGAFAGR 172
>gi|332285257|ref|YP_004417168.1| crossover junction endodeoxyribonuclease [Pusillimonas sp. T7-7]
gi|330429210|gb|AEC20544.1| crossover junction endodeoxyribonuclease [Pusillimonas sp. T7-7]
Length = 182
Score = 185 bits (471), Expect = 1e-45, Method: Composition-based stats.
Identities = 70/152 (46%), Positives = 105/152 (69%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPGLRRTG+G++DV G L +V+SGTIV Q+LA RL + + + +V+++ R
Sbjct: 1 MRILGIDPGLRRTGFGVIDVQGTRLVYVTSGTIVVPSDQALAGRLKVILDNIREVVQSTR 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P +A+E+VFVN + +TL LGQAR A+ + A + + V EY IKK+V+G GH K+
Sbjct: 61 PTVSALEKVFVNTNPASTLLLGQARGAAMCALADSLLDVHEYTALQIKKSVVGNGHAAKE 120
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
Q+ M++ L+ + D+ADALA A+CHA+
Sbjct: 121 QVQKMVQHLLGLNGVPAADSADALACAICHAH 152
>gi|308070381|ref|YP_003871986.1| Crossover junction endodeoxyribonuclease ruvC [Paenibacillus
polymyxa E681]
gi|305859660|gb|ADM71448.1| Crossover junction endodeoxyribonuclease ruvC [Paenibacillus
polymyxa E681]
Length = 167
Score = 185 bits (471), Expect = 1e-45, Method: Composition-based stats.
Identities = 53/156 (33%), Positives = 89/156 (57%), Gaps = 1/156 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+R +GIDPG+ G+G VD G + V G I + RL +YEG+ +I ++
Sbjct: 1 MRFLGIDPGIAIVGFGFVDKIGSKVVPVQYGCIQTEAHTPEEERLLHVYEGMLQLIDKYK 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ A+E++F N++ + + QAR + +L+ +P+ EY P +K+A++G G +KK
Sbjct: 61 PDAVALEKLFFNRNVTTAMSVSQARGVLVLAAKQRNLPIGEYTPMQVKQAIVGYGKAEKK 120
Query: 125 QIHMMLKMLMPES-FFKGKDAADALAIAVCHAYHAN 159
Q+ M++M + K D ADALA+A+CHA+
Sbjct: 121 QVQEMVRMFLKLQVVPKPDDVADALAVAICHAHSYG 156
>gi|77919930|ref|YP_357745.1| Holliday junction resolvase [Pelobacter carbinolicus DSM 2380]
gi|90146471|sp|Q3A232|RUVC_PELCD RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|77546013|gb|ABA89575.1| crossover junction endodeoxyribonuclease RuvC [Pelobacter
carbinolicus DSM 2380]
Length = 161
Score = 185 bits (470), Expect = 2e-45, Method: Composition-based stats.
Identities = 65/152 (42%), Positives = 102/152 (67%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPG R TG+G+++ G+ L V +G I + LA RL +Y+GL+ VI ++
Sbjct: 1 MRILGIDPGTRITGYGLIEKIGNRLLHVDNGAIYTRTDAPLADRLKTIYDGLSRVIADYA 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P AVE++FV K+A++ LKLG AR +A+L+ A +PV+EY +K+AV+G G K
Sbjct: 61 PTGVAVERIFVAKNALSALKLGHARGVAMLAGVNASLPVAEYTAVEVKQAVVGYGRAAKP 120
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
Q+ M+++L+ +DA+DALA+A+CHA+
Sbjct: 121 QVQQMVRVLLNLPEIAQEDASDALAVAICHAH 152
>gi|254302616|ref|ZP_04969974.1| crossover junction endodeoxyribonuclease [Fusobacterium nucleatum
subsp. polymorphum ATCC 10953]
gi|148322808|gb|EDK88058.1| crossover junction endodeoxyribonuclease [Fusobacterium nucleatum
subsp. polymorphum ATCC 10953]
Length = 190
Score = 185 bits (470), Expect = 2e-45, Method: Composition-based stats.
Identities = 51/166 (30%), Positives = 83/166 (50%), Gaps = 1/166 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+R+IGIDPG G+GI+D +N V G +++ S RL +Y + ++K +R
Sbjct: 1 MRVIGIDPGTAIVGYGIIDYDKNNYSIVDYGVVLTSKDLSTEERLEIVYNEIDKILKKYR 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
PE A+E +F K+ + + QAR + +L I ++ Y P +K + G G +KK
Sbjct: 61 PEFMAIEDLFYFKNNKTVISVAQARGVILLVGKQNNIAMTSYTPLQVKIGITGYGKAEKK 120
Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHANSGYYKIASQD 169
Q+ M++ + K DAADALAI + H S + +
Sbjct: 121 QVQQMVQKFLGLSEIPKPDDAADALAICITHINSLGSKLSFGGANN 166
>gi|320352802|ref|YP_004194141.1| crossover junction endodeoxyribonuclease RuvC [Desulfobulbus
propionicus DSM 2032]
gi|320121304|gb|ADW16850.1| crossover junction endodeoxyribonuclease RuvC [Desulfobulbus
propionicus DSM 2032]
Length = 162
Score = 185 bits (470), Expect = 2e-45, Method: Composition-based stats.
Identities = 62/154 (40%), Positives = 96/154 (62%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPG R TG+G++ G + FV+ GTI + + RL ++E L +VI +
Sbjct: 1 MRILGIDPGSRVTGYGVIAARGHEIGFVACGTIRTGEESDFSRRLLTIFEDLCEVISLHQ 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P AAVE +FV+++ + LKLG AR A+++ ++ V +Y +K+AV G G +K
Sbjct: 61 PSVAAVEDMFVDRNPRSALKLGHARGAAVVAALHNKLTVFDYPARKVKQAVAGYGQAEKG 120
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHA 158
Q+ M++ L+ KDAADALA+A+CHA+HA
Sbjct: 121 QVQHMVRTLLQLDATPSKDAADALAVAICHAHHA 154
>gi|237748979|ref|ZP_04579459.1| crossover junction endodeoxyribonuclease ruvC [Oxalobacter
formigenes OXCC13]
gi|229380341|gb|EEO30432.1| crossover junction endodeoxyribonuclease ruvC [Oxalobacter
formigenes OXCC13]
Length = 181
Score = 185 bits (470), Expect = 2e-45, Method: Composition-based stats.
Identities = 63/152 (41%), Positives = 101/152 (66%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
++I+GIDPGLR TG+GI+ G++L +++SGT+ + L RL +++G++++I ++
Sbjct: 1 MKILGIDPGLRTTGFGIIHKKGNSLVYIASGTVKTPAEAGLPLRLKTIFDGISEIIAEYQ 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ AA+E+VFVN + +TL LGQAR AI + + + V E+ IK+AV+G G KK
Sbjct: 61 PDCAAIEKVFVNVNPQSTLLLGQARGAAISALVASELAVYEFTALQIKQAVVGHGKAQKK 120
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
Q+ M++ L+ G DAADAL A+CHA+
Sbjct: 121 QVQEMVQRLLSLPGIPGSDAADALGAAICHAH 152
>gi|332977849|gb|EGK14602.1| crossover junction endoribonuclease subunit C [Desmospora sp. 8437]
Length = 167
Score = 185 bits (470), Expect = 2e-45, Method: Composition-based stats.
Identities = 58/163 (35%), Positives = 99/163 (60%), Gaps = 2/163 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RIIGIDPG+ G+G++D G+ L V G+I + S A RL Q+Y+ +T++ + +R
Sbjct: 1 MRIIGIDPGIAIVGYGVIDRQGNRLKAVDYGSIQTEAGLSTATRLKQIYDEVTELYQKFR 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ A+E++F N++ +GQAR + +L+ A ++EY P +K AV+G G K+
Sbjct: 61 PDVVAIEKLFFNRNVTTAFTVGQARGVLMLAAEEAGAVITEYTPLQVKMAVVGYGQAQKR 120
Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHANSGYYKIA 166
QI M+++L+ K D ADAL +A+C A+ +N+ ++
Sbjct: 121 QIQEMVRILLNLPEIPKPDDVADALGVAICEAH-SNTFTDRLG 162
>gi|125972704|ref|YP_001036614.1| crossover junction endodeoxyribonuclease RuvC [Clostridium
thermocellum ATCC 27405]
gi|256004863|ref|ZP_05429837.1| crossover junction endodeoxyribonuclease RuvC [Clostridium
thermocellum DSM 2360]
gi|281416892|ref|ZP_06247912.1| crossover junction endodeoxyribonuclease RuvC [Clostridium
thermocellum JW20]
gi|166233189|sp|A3DBU2|RUVC_CLOTH RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|125712929|gb|ABN51421.1| crossover junction endodeoxyribonuclease RuvC [Clostridium
thermocellum ATCC 27405]
gi|255991173|gb|EEU01281.1| crossover junction endodeoxyribonuclease RuvC [Clostridium
thermocellum DSM 2360]
gi|281408294|gb|EFB38552.1| crossover junction endodeoxyribonuclease RuvC [Clostridium
thermocellum JW20]
gi|316941060|gb|ADU75094.1| crossover junction endodeoxyribonuclease RuvC [Clostridium
thermocellum DSM 1313]
Length = 162
Score = 185 bits (470), Expect = 2e-45, Method: Composition-based stats.
Identities = 61/154 (39%), Positives = 90/154 (58%), Gaps = 1/154 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ I+GIDPG G+GIV G+ V G I + L RL LY GL ++I+ +R
Sbjct: 1 MIIMGIDPGFAIAGYGIVKYEGNKFTSVDYGAITTESSMELPKRLLVLYNGLKEIIEKYR 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
PE AVE++F NK+ L +G R +A+L+ A + I V EY P +K++++G G +K
Sbjct: 61 PEAIAVEELFFNKNIKTALAVGHGRGVAVLAAAQSGIDVFEYTPIQVKQSIVGYGRAEKT 120
Query: 125 QIHMMLKMLMPES-FFKGKDAADALAIAVCHAYH 157
Q+ M+K ++ K D ADALA+AVCHA+
Sbjct: 121 QVQQMVKAILNLPAIPKPDDVADALAVAVCHAHS 154
>gi|225025770|ref|ZP_03714962.1| hypothetical protein EIKCOROL_02674 [Eikenella corrodens ATCC
23834]
gi|224941467|gb|EEG22676.1| hypothetical protein EIKCOROL_02674 [Eikenella corrodens ATCC
23834]
Length = 178
Score = 185 bits (469), Expect = 2e-45, Method: Composition-based stats.
Identities = 69/165 (41%), Positives = 103/165 (62%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M+K IRI+GIDPG R TG+G++DV G + +V+SG I + LA R+ + + + ++I
Sbjct: 1 MQKPIRILGIDPGSRVTGFGVIDVLGQSQRYVASGCIKTIPGDELAGRIGIIVQHIGEII 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
++P +AAVEQVFVN + ATL LGQAR A+ + L +PV EY +K+AV+G G
Sbjct: 61 DTYQPNQAAVEQVFVNVNPAATLMLGQARGAAVAALVLRGLPVYEYTALQVKQAVVGQGK 120
Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
K+Q+ M+ ++ S DAAD LA+A+ HA +S K+
Sbjct: 121 AAKEQVQHMVVQMLKLSGKPQADAADGLAVALTHALRNHSLAAKL 165
>gi|323706512|ref|ZP_08118071.1| crossover junction endodeoxyribonuclease RuvC
[Thermoanaerobacterium xylanolyticum LX-11]
gi|323534142|gb|EGB23934.1| crossover junction endodeoxyribonuclease RuvC
[Thermoanaerobacterium xylanolyticum LX-11]
Length = 165
Score = 185 bits (469), Expect = 2e-45, Method: Composition-based stats.
Identities = 62/164 (37%), Positives = 99/164 (60%), Gaps = 2/164 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RIIGIDPG+ G+GI+D G + G I + V + RL +Y+G+ +I+ +R
Sbjct: 1 MRIIGIDPGIAIVGYGIIDDNGGKFKVLDYGAITTPVGAEKSLRLKDVYDGINSLIEKYR 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ A+E++F NK+A + +G+AR +AIL+ I V EY P +K++V+G G +KK
Sbjct: 61 PDVMAIEELFFNKNAKTVITIGEARGVAILAAVNCGIQVFEYTPLQVKQSVVGYGRAEKK 120
Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
Q+ M+K ++ K D ADALA+A+CH+ +N K+ S
Sbjct: 121 QVQNMVKAILRLDEIPKPDDVADALAVALCHSN-SNILNAKLGS 163
>gi|332968141|gb|EGK07224.1| crossover junction endoribonuclease subunit C [Kingella kingae ATCC
23330]
Length = 204
Score = 185 bits (469), Expect = 2e-45, Method: Composition-based stats.
Identities = 69/167 (41%), Positives = 99/167 (59%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M K+IRI+GIDPG R TG+GI+D G +V+SG I + + LA R+ + G+ ++I
Sbjct: 27 MNKTIRILGIDPGSRSTGFGIIDWVGREPIYVASGCIQTIPKDELAGRVSIIVRGIAELI 86
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
+RP +AAVEQVFVN + ATL LGQAR AI + L +PV EY +K++V+G G
Sbjct: 87 DTYRPNQAAVEQVFVNVNPAATLMLGQARGAAIAALVLRDLPVYEYTALQVKQSVVGQGK 146
Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
K+Q+ M+ ++ S DAAD LA+A+ H K+
Sbjct: 147 AAKEQVQHMVVKMLNLSGTPQADAADGLAVAITHGLRHQGLAGKLGG 193
>gi|325267304|ref|ZP_08133966.1| crossover junction endoribonuclease subunit C [Kingella
denitrificans ATCC 33394]
gi|324981241|gb|EGC16891.1| crossover junction endoribonuclease subunit C [Kingella
denitrificans ATCC 33394]
Length = 176
Score = 185 bits (469), Expect = 2e-45, Method: Composition-based stats.
Identities = 67/167 (40%), Positives = 99/167 (59%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M K IRI+GIDPG R TG+G++D G +V+SG I + LA R+ + G+ D++
Sbjct: 1 MSKPIRILGIDPGSRITGFGVIDWHGREPVYVASGCIKTLPNDELAGRIGMIVRGIGDLV 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
+RP +AAVEQVFVN + ATL LGQAR A+ + L +PV EY +K++V+G G
Sbjct: 61 AEYRPNQAAVEQVFVNVNPAATLMLGQARGAAVAALVLRDLPVYEYTALQVKQSVVGQGK 120
Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
K+Q+ M+ ++ S DAAD LA+A+ HA + ++
Sbjct: 121 AAKEQVQHMVVQMLGLSGTPQADAADGLAVAITHALRSQGLARQLGG 167
>gi|309388949|gb|ADO76829.1| crossover junction endodeoxyribonuclease RuvC [Halanaerobium
praevalens DSM 2228]
Length = 165
Score = 185 bits (469), Expect = 3e-45, Method: Composition-based stats.
Identities = 58/161 (36%), Positives = 99/161 (61%), Gaps = 3/161 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPGL G+ +VD ++ + G I + RL ++ + +++K ++
Sbjct: 1 MRILGIDPGLATIGYALVDKETNHFDVLEYGVIKTSADTENIKRLEIIHRNIEELVKEFK 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+E AVE++F NK+ + +GQAR + +L+ + A + V+EY P IK+AV+G G DK
Sbjct: 61 PKEMAVEELFFNKNVKTAIAVGQARGVILLAGSQAGLKVAEYTPLQIKQAVVGYGRADKM 120
Query: 125 QIHMMLKMLMPESF-FKGKDAADALAIAVCHAY--HANSGY 162
Q+ M+K L+ S + DAADALA+++CH + ++SG+
Sbjct: 121 QVQQMVKSLLNLSELPRPDDAADALAVSICHGHVYSSHSGW 161
>gi|300914175|ref|ZP_07131491.1| crossover junction endodeoxyribonuclease RuvC [Thermoanaerobacter
sp. X561]
gi|307724589|ref|YP_003904340.1| crossover junction endodeoxyribonuclease RuvC [Thermoanaerobacter
sp. X513]
gi|320115838|ref|YP_004185997.1| crossover junction endodeoxyribonuclease RuvC [Thermoanaerobacter
brockii subsp. finnii Ako-1]
gi|300889110|gb|EFK84256.1| crossover junction endodeoxyribonuclease RuvC [Thermoanaerobacter
sp. X561]
gi|307581650|gb|ADN55049.1| crossover junction endodeoxyribonuclease RuvC [Thermoanaerobacter
sp. X513]
gi|319928929|gb|ADV79614.1| crossover junction endodeoxyribonuclease RuvC [Thermoanaerobacter
brockii subsp. finnii Ako-1]
Length = 165
Score = 184 bits (468), Expect = 3e-45, Method: Composition-based stats.
Identities = 55/156 (35%), Positives = 92/156 (58%), Gaps = 1/156 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+R++GIDPG+ G+GI+D + + G + + A RL +Y G+ +IK++
Sbjct: 1 MRVLGIDPGIAIMGYGIIDYKSNKFTVIDYGAVTTKAGIDKALRLHDIYNGIISLIKSYS 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ A+E++F NK+A + +G++R ++IL+ + I V EY P +K+AV+G G DK
Sbjct: 61 PDVVAIEELFYNKNAKTVITIGESRGVSILAAVNSGIKVFEYTPLQVKQAVVGYGRADKH 120
Query: 125 QIHMMLKMLMPESFFK-GKDAADALAIAVCHAYHAN 159
Q+ M+K L+ D ADALA+A+CH + N
Sbjct: 121 QVQQMVKALLDLEEIPRPDDVADALAVAICHCHSNN 156
>gi|307244296|ref|ZP_07526411.1| crossover junction endodeoxyribonuclease RuvC [Peptostreptococcus
stomatis DSM 17678]
gi|306492446|gb|EFM64484.1| crossover junction endodeoxyribonuclease RuvC [Peptostreptococcus
stomatis DSM 17678]
Length = 165
Score = 184 bits (468), Expect = 3e-45, Method: Composition-based stats.
Identities = 51/158 (32%), Positives = 82/158 (51%), Gaps = 1/158 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ I+GIDPGL G+G+V+ + + G I + S RL ++Y+G+ + +
Sbjct: 1 MIILGIDPGLAIIGYGLVEYKNNRFRTIDYGAITTPAGMSTVERLERIYKGMNQLFHMYD 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
+E +E++F NK+ + + QAR + +LS P EY P +K+ V G G DK
Sbjct: 61 IDEVGIEELFFNKNVKTAITVAQARGVILLSCQHHAKPTYEYTPLQVKQGVCGYGRADKP 120
Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHANSG 161
Q+ M+ + K D ADALA+A+CHA+ G
Sbjct: 121 QVQKMVTSFLNLKEVPKPDDVADALAVAICHAHSNRLG 158
>gi|237743571|ref|ZP_04574052.1| crossover junction endodeoxyribonuclease ruvC [Fusobacterium sp.
7_1]
gi|229433350|gb|EEO43562.1| crossover junction endodeoxyribonuclease ruvC [Fusobacterium sp.
7_1]
Length = 190
Score = 184 bits (468), Expect = 3e-45, Method: Composition-based stats.
Identities = 51/159 (32%), Positives = 81/159 (50%), Gaps = 1/159 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+R+IGIDPG G+GI+D + V G I++ S RL +Y + ++K ++
Sbjct: 1 MRVIGIDPGTAIVGYGIIDYDKNKYSVVDYGVILTSKDLSTEERLEVIYNNMNKILKKYK 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
PE A+E +F K+ + + QAR + +L IP+S Y P +K + G G +KK
Sbjct: 61 PEFMAIEDLFYFKNNKTVISVAQARGVILLVGKQNNIPMSNYTPLQVKIGITGYGKAEKK 120
Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHANSGY 162
Q+ M++ + + DAADALAI + H S
Sbjct: 121 QVQQMVQKFLGLSEIPRPDDAADALAICITHINSLGSKL 159
>gi|294141123|ref|YP_003557101.1| crossover junction endodeoxyribonuclease RuvC [Shewanella violacea
DSS12]
gi|293327592|dbj|BAJ02323.1| crossover junction endodeoxyribonuclease RuvC [Shewanella violacea
DSS12]
Length = 173
Score = 184 bits (468), Expect = 3e-45, Method: Composition-based stats.
Identities = 61/158 (38%), Positives = 99/158 (62%), Gaps = 1/158 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G + ++ SG I + A+RL Q+++G++++I+ ++P
Sbjct: 3 IILGIDPGSRITGYGVIKRNGRHPIYLGSGCIRTSS-DDFAYRLKQIFDGVSEIIRQYQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
E A+E+VF+ K+A + LKLGQAR AI++ +PV EY+ IK AV+G G K Q
Sbjct: 62 TEFAIERVFMAKNADSALKLGQARGAAIVAATNVDLPVGEYSATQIKSAVVGTGKAQKSQ 121
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYY 163
+ M++ ++ S DAADAL +A+CH + + S
Sbjct: 122 VQHMVQQILKLSASPQADAADALGVAICHFHTSQSLLA 159
>gi|218768423|ref|YP_002342935.1| Holliday junction resolvase [Neisseria meningitidis Z2491]
gi|20978752|sp|Q9JTU3|RUVC_NEIMA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|319410668|emb|CBY91044.1| crossover junction endodeoxyribonuclease RuvC (Holliday junction
nuclease RuvC; Holliday junction resolvase RuvC)
[Neisseria meningitidis WUE 2594]
Length = 178
Score = 184 bits (468), Expect = 3e-45, Method: Composition-based stats.
Identities = 65/165 (39%), Positives = 102/165 (61%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M ++RI+GIDPG R TG+G++DV G + +V+SG I + LA R+ + + +V+
Sbjct: 1 MSATVRILGIDPGSRVTGFGVIDVRGRDHFYVASGCIKTPADAPLADRIAVIVRHIGEVV 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
++P++AAVEQVFVN + +TL LGQAR A+ + ++PVSEY +K+AV+G G
Sbjct: 61 TVYKPQQAAVEQVFVNVNPASTLMLGQARGAALAALVSHKLPVSEYTALQVKQAVVGKGK 120
Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
K+Q+ M+ ++ S DAAD LA+A+ HA + K+
Sbjct: 121 AAKEQVQHMVVQMLGLSGTPQPDAADGLAVALTHALRNHGLAAKL 165
>gi|121599355|ref|YP_991619.1| Holliday junction resolvase [Burkholderia mallei SAVP1]
gi|121228165|gb|ABM50683.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia mallei
SAVP1]
Length = 284
Score = 184 bits (467), Expect = 4e-45, Method: Composition-based stats.
Identities = 70/157 (44%), Positives = 104/157 (66%), Gaps = 1/157 (0%)
Query: 4 SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
S+RI+GIDPGLR TG+G++DV+G L +V+SG I + L RL +Y+G++ +I+
Sbjct: 104 SMRILGIDPGLRVTGFGVIDVSGHQLAYVASGVIKTPT-ADLPTRLGTIYDGVSTLIREH 162
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
P++AA+E+VFVN + +TL LGQAR AI +PV+EY +K+AV+G G K
Sbjct: 163 TPDQAAIEKVFVNVNPQSTLLLGQARGAAICGLVSGGLPVAEYTALQLKQAVVGYGRATK 222
Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
+Q+ M+ L+ S G DAADAL +A+CHA+ N+
Sbjct: 223 EQMQEMVARLLSLSGRPGTDAADALGMAICHAHGGNT 259
>gi|167037425|ref|YP_001665003.1| Holliday junction resolvase [Thermoanaerobacter pseudethanolicus
ATCC 33223]
gi|167040092|ref|YP_001663077.1| Holliday junction resolvase [Thermoanaerobacter sp. X514]
gi|256752591|ref|ZP_05493445.1| crossover junction endodeoxyribonuclease RuvC [Thermoanaerobacter
ethanolicus CCSD1]
gi|166854332|gb|ABY92741.1| crossover junction endodeoxyribonuclease RuvC [Thermoanaerobacter
sp. X514]
gi|166856259|gb|ABY94667.1| crossover junction endodeoxyribonuclease RuvC [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|256748529|gb|EEU61579.1| crossover junction endodeoxyribonuclease RuvC [Thermoanaerobacter
ethanolicus CCSD1]
Length = 182
Score = 184 bits (467), Expect = 4e-45, Method: Composition-based stats.
Identities = 55/156 (35%), Positives = 92/156 (58%), Gaps = 1/156 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+R++GIDPG+ G+GI+D + + G + + A RL +Y G+ +IK++
Sbjct: 18 MRVLGIDPGIAIMGYGIIDYKSNKFTVIDYGAVTTKAGIDKALRLHDIYNGIISLIKSYS 77
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ A+E++F NK+A + +G++R ++IL+ + I V EY P +K+AV+G G DK
Sbjct: 78 PDVVAIEELFYNKNAKTVITIGESRGVSILAAVNSGIKVFEYTPLQVKQAVVGYGRADKH 137
Query: 125 QIHMMLKMLMPESFFK-GKDAADALAIAVCHAYHAN 159
Q+ M+K L+ D ADALA+A+CH + N
Sbjct: 138 QVQQMVKALLDLEEIPRPDDVADALAVAICHCHSNN 173
>gi|11279725|pir||C81857 crossover junction endoribonuclease (EC 3.1.22.4) NMA1631
[imported] - Neisseria meningitidis (strain Z2491
serogroup A)
gi|121052431|emb|CAM08767.1| crossover junction endodeoxyribonuclease [Neisseria meningitidis
Z2491]
Length = 180
Score = 184 bits (467), Expect = 4e-45, Method: Composition-based stats.
Identities = 65/165 (39%), Positives = 102/165 (61%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M ++RI+GIDPG R TG+G++DV G + +V+SG I + LA R+ + + +V+
Sbjct: 3 MSATVRILGIDPGSRVTGFGVIDVRGRDHFYVASGCIKTPADAPLADRIAVIVRHIGEVV 62
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
++P++AAVEQVFVN + +TL LGQAR A+ + ++PVSEY +K+AV+G G
Sbjct: 63 TVYKPQQAAVEQVFVNVNPASTLMLGQARGAALAALVSHKLPVSEYTALQVKQAVVGKGK 122
Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
K+Q+ M+ ++ S DAAD LA+A+ HA + K+
Sbjct: 123 AAKEQVQHMVVQMLGLSGTPQPDAADGLAVALTHALRNHGLAAKL 167
>gi|220928771|ref|YP_002505680.1| Holliday junction resolvase [Clostridium cellulolyticum H10]
gi|254767467|sp|B8I1A2|RUVC_CLOCE RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|219999099|gb|ACL75700.1| crossover junction endodeoxyribonuclease RuvC [Clostridium
cellulolyticum H10]
Length = 166
Score = 184 bits (467), Expect = 4e-45, Method: Composition-based stats.
Identities = 53/159 (33%), Positives = 86/159 (54%), Gaps = 1/159 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ I+GIDPG TG+G+V G+ + I + + RL LY L +I +R
Sbjct: 1 MIIMGIDPGFAITGYGVVKYEGNKFSVLDYNAITTVASMKFSDRLLVLYNELEKLINKFR 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ ++E++F NK+ L +G R +A+L+ A + I + EY P +K++V+G G +K
Sbjct: 61 PDAISIEELFFNKNIKTALTVGHGRGVAVLAAAKSGIDIFEYTPLQVKQSVVGYGRAEKA 120
Query: 125 QIHMMLKMLMPES-FFKGKDAADALAIAVCHAYHANSGY 162
Q+ M+K ++ K D ADALA+A+CH G
Sbjct: 121 QVQQMVKAILNLPAIPKPDDVADALAVAICHGNSHRMGA 159
>gi|254191518|ref|ZP_04898021.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
pseudomallei Pasteur 52237]
gi|157939189|gb|EDO94859.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
pseudomallei Pasteur 52237]
Length = 269
Score = 184 bits (467), Expect = 4e-45, Method: Composition-based stats.
Identities = 70/157 (44%), Positives = 104/157 (66%), Gaps = 1/157 (0%)
Query: 4 SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
S+RI+GIDPGLR TG+G++DV+G L +V+SG I + L RL +Y+G++ +I+
Sbjct: 89 SMRILGIDPGLRVTGFGVIDVSGHQLAYVASGVIKTPT-ADLPTRLGTIYDGVSTLIREH 147
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
P++AA+E+VFVN + +TL LGQAR AI +PV+EY +K+AV+G G K
Sbjct: 148 TPDQAAIEKVFVNVNPQSTLLLGQARGAAICGLVSGGLPVAEYTALQLKQAVVGYGRATK 207
Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
+Q+ M+ L+ S G DAADAL +A+CHA+ N+
Sbjct: 208 EQMQEMVARLLSLSGRPGTDAADALGMAICHAHGGNT 244
>gi|256545111|ref|ZP_05472477.1| crossover junction endodeoxyribonuclease RuvC [Anaerococcus
vaginalis ATCC 51170]
gi|256399152|gb|EEU12763.1| crossover junction endodeoxyribonuclease RuvC [Anaerococcus
vaginalis ATCC 51170]
Length = 164
Score = 183 bits (466), Expect = 5e-45, Method: Composition-based stats.
Identities = 52/156 (33%), Positives = 92/156 (58%), Gaps = 1/156 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ I+GIDPG+ G+G+++V G+ + +G + + + RL LY+ L D+IK ++
Sbjct: 1 MIILGIDPGIAIMGYGVLEVNGNRYKVLENGVVTTSSKTKTPERLKILYDNLNDIIKQYK 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+E A+E++F N++ + +G AR + +L + +P+ EY P IK+A+ G G +KK
Sbjct: 61 PDEFAIEELFFNQNVKTAITVGHARGVQVLCAQVNNLPIYEYTPLQIKQAITGFGRANKK 120
Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHAN 159
Q+ + L+ K DAADALA+++ HA+
Sbjct: 121 QMQETVTTLLNLSEIPKPDDAADALAVSLTHAFSQR 156
>gi|294668120|ref|ZP_06733227.1| crossover junction endodeoxyribonuclease RuvC [Neisseria elongata
subsp. glycolytica ATCC 29315]
gi|291309828|gb|EFE51071.1| crossover junction endodeoxyribonuclease RuvC [Neisseria elongata
subsp. glycolytica ATCC 29315]
Length = 178
Score = 183 bits (466), Expect = 5e-45, Method: Composition-based stats.
Identities = 67/165 (40%), Positives = 100/165 (60%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M K +RI+GIDPG R TG+GI+DV G +V+SG I + LA R+ + E + ++I
Sbjct: 1 MNKPLRILGIDPGSRITGFGIIDVVGREHFYVASGCIKTIPGDELAGRIGIIVENIGEII 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
++P++AAVEQVFVN + ATL LGQAR A+ + + +PV EY +K+AV+G G
Sbjct: 61 ACYKPQQAAVEQVFVNVNPAATLMLGQARGAAVAALVMRGLPVYEYTALQVKQAVVGQGK 120
Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
K+Q+ M+ ++ S DAAD LA+A+ HA ++
Sbjct: 121 AAKEQVQDMVVRMLGLSGTPQADAADGLAVALTHALRNQGLAARL 165
>gi|124383616|ref|YP_001027115.1| Holliday junction resolvase [Burkholderia mallei NCTC 10229]
gi|124291636|gb|ABN00905.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia mallei
NCTC 10229]
Length = 275
Score = 183 bits (466), Expect = 5e-45, Method: Composition-based stats.
Identities = 70/157 (44%), Positives = 104/157 (66%), Gaps = 1/157 (0%)
Query: 4 SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
S+RI+GIDPGLR TG+G++DV+G L +V+SG I + L RL +Y+G++ +I+
Sbjct: 95 SMRILGIDPGLRVTGFGVIDVSGHQLAYVASGVIKTPT-ADLPTRLGTIYDGVSTLIREH 153
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
P++AA+E+VFVN + +TL LGQAR AI +PV+EY +K+AV+G G K
Sbjct: 154 TPDQAAIEKVFVNVNPQSTLLLGQARGAAICGLVSGGLPVAEYTALQLKQAVVGYGRATK 213
Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
+Q+ M+ L+ S G DAADAL +A+CHA+ N+
Sbjct: 214 EQMQEMVARLLSLSGRPGTDAADALGMAICHAHGGNT 250
>gi|118581083|ref|YP_902333.1| Holliday junction resolvase [Pelobacter propionicus DSM 2379]
gi|166233278|sp|A1ASF5|RUVC_PELPD RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|118503793|gb|ABL00276.1| crossover junction endodeoxyribonuclease RuvC [Pelobacter
propionicus DSM 2379]
Length = 176
Score = 183 bits (466), Expect = 6e-45, Method: Composition-based stats.
Identities = 67/163 (41%), Positives = 99/163 (60%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+R++GIDPG R TG+GIV+ AG L V +G I + RL +++GLT VI +
Sbjct: 1 MRVLGIDPGSRITGYGIVEQAGSRLIHVDNGAIFTDSALDFPGRLKSIFDGLTTVIAEYE 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+E AVE VF++ +A + LKLGQAR AI++ A +PV+EY +K+AV+G G K+
Sbjct: 61 PDEVAVENVFLSNNAQSALKLGQARGAAIVAAVHAGLPVAEYTALQVKQAVVGRGKAAKE 120
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
Q+ ML L+ DA+DALA+AVCH + + ++
Sbjct: 121 QVQKMLTALLSLPEVAQADASDALAVAVCHLHSHHLVRTSASA 163
>gi|163751783|ref|ZP_02159000.1| crossover junction endodeoxyribonuclease RuvC [Shewanella benthica
KT99]
gi|161328347|gb|EDP99507.1| crossover junction endodeoxyribonuclease RuvC [Shewanella benthica
KT99]
Length = 173
Score = 183 bits (466), Expect = 6e-45, Method: Composition-based stats.
Identities = 62/158 (39%), Positives = 101/158 (63%), Gaps = 1/158 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G + ++ SG I + + A+RL Q+++G++++I+ ++P
Sbjct: 3 IILGIDPGSRITGYGVIKRNGRHPLYLGSGCIRTNS-EDFAYRLKQIFDGISEIIRQYQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
E A+E+VF+ K+A + LKLGQAR AI++ A +PV EY+ IK AV+G G K Q
Sbjct: 62 TEFAIERVFMAKNADSALKLGQARGAAIVAATNADLPVGEYSATQIKSAVVGTGRAQKSQ 121
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYY 163
+ M++ ++ S DAADAL +A+CH + + S
Sbjct: 122 VQHMVQQILKLSACPQADAADALGVAICHFHTSQSLLA 159
>gi|83652274|gb|ABC36337.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
thailandensis E264]
Length = 312
Score = 183 bits (466), Expect = 6e-45, Method: Composition-based stats.
Identities = 70/157 (44%), Positives = 104/157 (66%), Gaps = 1/157 (0%)
Query: 4 SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
S+RI+GIDPGLR TG+G++DV+G L +V+SG I + L RL +Y+G++ +I+
Sbjct: 132 SMRILGIDPGLRVTGFGVIDVSGHRLAYVASGVIKTPT-ADLPTRLGTIYDGVSTLIREH 190
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
P++AA+E+VFVN + +TL LGQAR AI +PV+EY +K+AV+G G K
Sbjct: 191 TPDQAAIEKVFVNVNPQSTLLLGQARGAAICGLVSGGLPVAEYTALQLKQAVVGYGRATK 250
Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
+Q+ M+ L+ S G DAADAL +A+CHA+ N+
Sbjct: 251 EQMQEMVARLLSLSGLPGTDAADALGMAICHAHGGNT 287
>gi|187479250|ref|YP_787275.1| Holliday junction resolvase [Bordetella avium 197N]
gi|123738521|sp|Q2KVY8|RUVC_BORA1 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|115423837|emb|CAJ50388.1| crossover junction endodeoxyribonuclease [Bordetella avium 197N]
Length = 181
Score = 183 bits (466), Expect = 6e-45, Method: Composition-based stats.
Identities = 67/154 (43%), Positives = 99/154 (64%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPGLRRTG+G+VD G L +++SGTIV +LA RL + + L +V + R
Sbjct: 1 MRILGIDPGLRRTGFGVVDAEGSRLRYIASGTIVVPPDLALAQRLKVILDNLREVARETR 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ AA+E VF+N + +TL LG AR A+ + A + + V EY IKK+ +G G K+
Sbjct: 61 PDVAALEIVFLNANPSSTLLLGHARGAALCALAESGLDVHEYTALQIKKSTVGTGRAAKE 120
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHA 158
Q+ MM++ L+ + D+ADALA A+CHA+
Sbjct: 121 QVQMMVQHLLSLNGTPAPDSADALACAICHAHTG 154
>gi|161572978|ref|YP_207323.2| Holliday junction resolvase [Neisseria gonorrhoeae FA 1090]
gi|254493063|ref|ZP_05106234.1| holliday junction resolvase [Neisseria gonorrhoeae 1291]
gi|268598318|ref|ZP_06132485.1| holliday junction resolvase [Neisseria gonorrhoeae MS11]
gi|268600670|ref|ZP_06134837.1| holliday junction resolvase [Neisseria gonorrhoeae PID18]
gi|268602981|ref|ZP_06137148.1| holliday junction resolvase [Neisseria gonorrhoeae PID1]
gi|268681453|ref|ZP_06148315.1| holliday junction resolvase [Neisseria gonorrhoeae PID332]
gi|268683622|ref|ZP_06150484.1| holliday junction resolvase [Neisseria gonorrhoeae SK-92-679]
gi|268685925|ref|ZP_06152787.1| holliday junction resolvase [Neisseria gonorrhoeae SK-93-1035]
gi|97274826|sp|Q5FA76|RUVC_NEIG1 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|226512103|gb|EEH61448.1| holliday junction resolvase [Neisseria gonorrhoeae 1291]
gi|268582449|gb|EEZ47125.1| holliday junction resolvase [Neisseria gonorrhoeae MS11]
gi|268584801|gb|EEZ49477.1| holliday junction resolvase [Neisseria gonorrhoeae PID18]
gi|268587112|gb|EEZ51788.1| holliday junction resolvase [Neisseria gonorrhoeae PID1]
gi|268621737|gb|EEZ54137.1| holliday junction resolvase [Neisseria gonorrhoeae PID332]
gi|268623906|gb|EEZ56306.1| holliday junction resolvase [Neisseria gonorrhoeae SK-92-679]
gi|268626209|gb|EEZ58609.1| holliday junction resolvase [Neisseria gonorrhoeae SK-93-1035]
Length = 178
Score = 183 bits (465), Expect = 6e-45, Method: Composition-based stats.
Identities = 66/165 (40%), Positives = 103/165 (62%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M ++RI+GIDPG R TG+GI+DV G + +V+SG I + + LA R+ + + +V+
Sbjct: 1 MSATVRILGIDPGSRVTGFGIIDVRGRDHFYVASGCIKTPADEPLADRIAVIVRHIGEVV 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
++P++AAVEQVFVN + +TL LGQAR A+ + ++PVSEY +K+AV+G G
Sbjct: 61 AVYKPQQAAVEQVFVNVNPASTLMLGQARGAALAALVSHKLPVSEYTALQVKQAVVGKGK 120
Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
K+Q+ M+ ++ S DAAD LA+A+ HA + K+
Sbjct: 121 AAKEQVQHMVVQMLGLSGTPQADAADGLAVALTHALRNHGLAAKL 165
>gi|15677278|ref|NP_274431.1| Holliday junction resolvase [Neisseria meningitidis MC58]
gi|20978753|sp|Q9JYV1|RUVC_NEIMB RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|7226658|gb|AAF41780.1| crossover junction endodeoxyribonuclease RuvC [Neisseria
meningitidis MC58]
gi|316985809|gb|EFV64752.1| crossover junction endodeoxyribonuclease RuvC [Neisseria
meningitidis H44/76]
gi|325134361|gb|EGC57006.1| crossover junction endodeoxyribonuclease RuvC [Neisseria
meningitidis M13399]
gi|325140376|gb|EGC62897.1| crossover junction endodeoxyribonuclease RuvC [Neisseria
meningitidis CU385]
gi|325144660|gb|EGC66958.1| crossover junction endodeoxyribonuclease RuvC [Neisseria
meningitidis M01-240013]
gi|325205826|gb|ADZ01279.1| crossover junction endodeoxyribonuclease RuvC [Neisseria
meningitidis M04-240196]
Length = 178
Score = 183 bits (465), Expect = 7e-45, Method: Composition-based stats.
Identities = 66/165 (40%), Positives = 102/165 (61%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M S+RI+GIDPG R TG+G++DV G + +V+SG I + LA R+ + + +V+
Sbjct: 1 MAASVRILGIDPGSRVTGFGVIDVRGRDHFYVASGCIKTPADAPLADRIAVIVRHIGEVV 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
++P++AAVEQVFVN + +TL LGQAR A+ + ++PVSEY +K+AV+G G
Sbjct: 61 TVYKPQQAAVEQVFVNVNPASTLMLGQARGAALAALVSHKLPVSEYTALQVKQAVVGKGK 120
Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
K+Q+ M+ ++ S DAAD LA+A+ HA + K+
Sbjct: 121 AAKEQVQHMVVQMLGLSGTPQPDAADGLAVALTHALRNHGLAAKL 165
>gi|322420881|ref|YP_004200104.1| crossover junction endodeoxyribonuclease RuvC [Geobacter sp. M18]
gi|320127268|gb|ADW14828.1| crossover junction endodeoxyribonuclease RuvC [Geobacter sp. M18]
Length = 164
Score = 183 bits (465), Expect = 7e-45, Method: Composition-based stats.
Identities = 63/155 (40%), Positives = 99/155 (63%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ I+GIDPG R+TG+G++ G+ L + +G I + + RL +++ GL+ VI ++
Sbjct: 1 MIILGIDPGSRKTGYGLISKQGNRLVHIDNGAIFTQSAKDFPQRLEKIFTGLSAVIAQYQ 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
PE AVE VF+ K+A++ LKLGQAR AI++ +PV EY +K+AV+G G +K
Sbjct: 61 PEVVAVENVFLAKNAMSALKLGQARGAAIVAAVNVGLPVHEYTAMQVKQAVVGTGRAEKA 120
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHAN 159
Q+ M+K L+ +DA+DALA+A+CHA+ A
Sbjct: 121 QVQQMIKALLNLPEVAQEDASDALAVAICHAHSAG 155
>gi|76580596|gb|ABA50071.1| crossover junction endodeoxyribonuclease [Burkholderia pseudomallei
1710b]
Length = 275
Score = 183 bits (465), Expect = 7e-45, Method: Composition-based stats.
Identities = 70/157 (44%), Positives = 104/157 (66%), Gaps = 1/157 (0%)
Query: 4 SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
S+RI+GIDPGLR TG+G++DV+G L +V+SG I + L RL +Y+G++ +I+
Sbjct: 95 SMRILGIDPGLRVTGFGVIDVSGHQLAYVASGVIKTPT-ADLPTRLGTIYDGVSTLIREH 153
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
P++AA+E+VFVN + +TL LGQAR AI +PV+EY +K+AV+G G K
Sbjct: 154 TPDQAAIEKVFVNVNPQSTLLLGQARGAAICGLVSGGLPVAEYTALQLKQAVVGYGRATK 213
Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
+Q+ M+ L+ S G DAADAL +A+CHA+ N+
Sbjct: 214 EQMQEMVARLLSLSGRPGTDAADALGMAICHAHGGNT 250
>gi|187611526|sp|A1KUM5|RUVC_NEIMF RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|254672932|emb|CBA07309.1| crossover junction endodeoxyribonuclease RuvC [Neisseria
meningitidis alpha275]
gi|325132399|gb|EGC55092.1| crossover junction endodeoxyribonuclease RuvC [Neisseria
meningitidis M6190]
gi|325136537|gb|EGC59141.1| crossover junction endodeoxyribonuclease RuvC [Neisseria
meningitidis M0579]
gi|325138388|gb|EGC60956.1| crossover junction endodeoxyribonuclease RuvC [Neisseria
meningitidis ES14902]
gi|325142619|gb|EGC65011.1| crossover junction endodeoxyribonuclease RuvC [Neisseria
meningitidis 961-5945]
gi|325198554|gb|ADY94010.1| crossover junction endodeoxyribonuclease RuvC [Neisseria
meningitidis G2136]
gi|325204404|gb|ADY99857.1| crossover junction endodeoxyribonuclease RuvC [Neisseria
meningitidis M01-240355]
Length = 178
Score = 183 bits (465), Expect = 8e-45, Method: Composition-based stats.
Identities = 66/165 (40%), Positives = 102/165 (61%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M ++RI+GIDPG R TG+GI+DV G + +V+SG I + LA R+ + + +V+
Sbjct: 1 MSATVRILGIDPGSRVTGFGIIDVRGRDHFYVASGCIKTPPDAPLADRIAVIVRHIGEVV 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
++P++AAVEQVFVN + +TL LGQAR A+ + ++PVSEY +K+AV+G G
Sbjct: 61 AVYKPQQAAVEQVFVNVNPASTLMLGQARGAALAALVSHKLPVSEYTALQVKQAVVGKGK 120
Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
K+Q+ M+ ++ S DAAD LA+A+ HA + K+
Sbjct: 121 AAKEQVQHMVVQMLGLSGTPQADAADGLAVALTHALRNHGLAAKL 165
>gi|310643560|ref|YP_003948318.1| crossover junction endodeoxyribonuclease ruvc [Paenibacillus
polymyxa SC2]
gi|309248510|gb|ADO58077.1| Crossover junction endodeoxyribonuclease ruvC [Paenibacillus
polymyxa SC2]
Length = 167
Score = 183 bits (465), Expect = 8e-45, Method: Composition-based stats.
Identities = 53/156 (33%), Positives = 89/156 (57%), Gaps = 1/156 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+R +GIDPG+ G+G VD G + V G I + RL +YEG+ +I ++
Sbjct: 1 MRFLGIDPGIAIVGFGFVDKIGSKVVPVQYGCIQTEAHTPEEDRLLHVYEGMLQLIDKYK 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ A+E++F N++ + + QAR + +L+ +P+ EY P +K+A++G G +KK
Sbjct: 61 PDAVALEKLFFNRNVTTAMSVSQARGVLVLAAKQRNLPIGEYTPMQVKQAIVGYGKAEKK 120
Query: 125 QIHMMLKMLMPESF-FKGKDAADALAIAVCHAYHAN 159
Q+ M++M + K D ADALA+A+CHA+
Sbjct: 121 QVQEMIRMFLKLQAVPKPDDVADALAVAICHAHSYG 156
>gi|325128477|gb|EGC51357.1| crossover junction endodeoxyribonuclease RuvC [Neisseria
meningitidis N1568]
Length = 178
Score = 183 bits (465), Expect = 8e-45, Method: Composition-based stats.
Identities = 67/165 (40%), Positives = 102/165 (61%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M S+RI+GIDPG R TG+G++DV G + +V+SG I + LA R+ + + +VI
Sbjct: 1 MAASVRILGIDPGSRVTGFGVIDVRGRDHFYVASGCIKTPADAPLADRIAVIVRHIGEVI 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
++P++AAVEQVFVN + +TL LGQAR A+ + ++PVSEY +K+AV+G G
Sbjct: 61 TVYKPQQAAVEQVFVNVNPASTLMLGQARGAALAALVSHKLPVSEYTALQVKQAVVGKGK 120
Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
K+Q+ M+ ++ S DAAD LA+A+ HA + K+
Sbjct: 121 AAKEQVQHMVVQMLGLSGTPQPDAADGLAVALTHALRNHGLAAKL 165
>gi|257066396|ref|YP_003152652.1| crossover junction endodeoxyribonuclease RuvC [Anaerococcus
prevotii DSM 20548]
gi|256798276|gb|ACV28931.1| crossover junction endodeoxyribonuclease RuvC [Anaerococcus
prevotii DSM 20548]
Length = 164
Score = 183 bits (465), Expect = 8e-45, Method: Composition-based stats.
Identities = 50/156 (32%), Positives = 89/156 (57%), Gaps = 1/156 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPG+ G+G+++ + + + +G + + + RL LY+ L ++I+ ++
Sbjct: 1 MRILGIDPGIAIMGYGVIEFKENKIKVLENGVVTTSSKTKTGKRLELLYDNLHEIIEEFK 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+E A+E++F N + + +G AR I +L +P+ EY P IK+A+ G G K
Sbjct: 61 PDEFAIEELFFNSNVKTAIIVGHARGIQVLCAQQKGLPIYEYTPLQIKQAITGYGRASKS 120
Query: 125 QIHMMLKMLMPES-FFKGKDAADALAIAVCHAYHAN 159
Q+ + + L+ K DAADAL++A+CHA
Sbjct: 121 QMQLTITQLLNLKAIPKPDDAADALSVALCHALSQR 156
>gi|289422392|ref|ZP_06424238.1| crossover junction endodeoxyribonuclease RuvC [Peptostreptococcus
anaerobius 653-L]
gi|289157227|gb|EFD05846.1| crossover junction endodeoxyribonuclease RuvC [Peptostreptococcus
anaerobius 653-L]
Length = 164
Score = 183 bits (464), Expect = 8e-45, Method: Composition-based stats.
Identities = 52/156 (33%), Positives = 81/156 (51%), Gaps = 1/156 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ I+GIDPGL G+GIV+ + G I + RL +Y G+ + +
Sbjct: 1 MIILGIDPGLAIIGYGIVEYKNSKFRTIDYGAITTPAEMPTVERLDMIYRGMNQLFHLYD 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
+E ++E++F NK+ + + QAR + +LS +P+ EY P +K+ V G G DK
Sbjct: 61 IDEISIEELFFNKNITTGITVAQARGVILLSCVQHSVPIYEYTPLQVKQGVCGYGRADKS 120
Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHAN 159
Q+ M+ + S K D ADALAIA+CHA+
Sbjct: 121 QVQRMVTSFLNLKSVPKPDDVADALAIAICHAHSNR 156
>gi|227499582|ref|ZP_03929689.1| crossover junction endodeoxyribonuclease [Anaerococcus tetradius
ATCC 35098]
gi|227218341|gb|EEI83595.1| crossover junction endodeoxyribonuclease [Anaerococcus tetradius
ATCC 35098]
Length = 164
Score = 183 bits (464), Expect = 9e-45, Method: Composition-based stats.
Identities = 50/156 (32%), Positives = 87/156 (55%), Gaps = 1/156 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ I+GIDPG+ G+GI++ + + + +G + + + RL LY+ L +IK ++
Sbjct: 1 MIILGIDPGIAIMGYGIIEFKENKVKVLENGVVTTSSKTKTGRRLELLYDNLHQIIKEFK 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+E A+E++F N + + +G AR + +L +P+ EY P IK+A+ G G K
Sbjct: 61 PDEFAIEELFFNSNVKTAITVGHARGVQVLCAQQNMLPIYEYTPLQIKQAITGYGRASKS 120
Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHAN 159
Q+ + + L+ K DAADAL++A+CHA
Sbjct: 121 QMQLTVTRLLNLKEMPKPDDAADALSVALCHALSQR 156
>gi|194097787|ref|YP_002000830.1| Holliday junction resolvase [Neisseria gonorrhoeae NCCP11945]
gi|239998285|ref|ZP_04718209.1| Holliday junction resolvase [Neisseria gonorrhoeae 35/02]
gi|240013467|ref|ZP_04720380.1| Holliday junction resolvase [Neisseria gonorrhoeae DGI18]
gi|240015906|ref|ZP_04722446.1| Holliday junction resolvase [Neisseria gonorrhoeae FA6140]
gi|240080045|ref|ZP_04724588.1| Holliday junction resolvase [Neisseria gonorrhoeae FA19]
gi|240112255|ref|ZP_04726745.1| Holliday junction resolvase [Neisseria gonorrhoeae MS11]
gi|240115000|ref|ZP_04729062.1| Holliday junction resolvase [Neisseria gonorrhoeae PID18]
gi|240117285|ref|ZP_04731347.1| Holliday junction resolvase [Neisseria gonorrhoeae PID1]
gi|240120539|ref|ZP_04733501.1| Holliday junction resolvase [Neisseria gonorrhoeae PID24-1]
gi|240122836|ref|ZP_04735792.1| Holliday junction resolvase [Neisseria gonorrhoeae PID332]
gi|240125032|ref|ZP_04737918.1| Holliday junction resolvase [Neisseria gonorrhoeae SK-92-679]
gi|240127546|ref|ZP_04740207.1| Holliday junction resolvase [Neisseria gonorrhoeae SK-93-1035]
gi|260441184|ref|ZP_05795000.1| Holliday junction resolvase [Neisseria gonorrhoeae DGI2]
gi|268594141|ref|ZP_06128308.1| holliday junction resolvase [Neisseria gonorrhoeae 35/02]
gi|268596192|ref|ZP_06130359.1| holliday junction resolvase [Neisseria gonorrhoeae FA19]
gi|291044518|ref|ZP_06570227.1| holliday junction resolvase [Neisseria gonorrhoeae DGI2]
gi|293397653|ref|ZP_06641859.1| crossover junction endodeoxyribonuclease RuvC [Neisseria
gonorrhoeae F62]
gi|59717506|gb|AAW88911.1| putative crossover junction endodeoxyribonuclease [Neisseria
gonorrhoeae FA 1090]
gi|193933077|gb|ACF28901.1| Holliday junction resolvase [Neisseria gonorrhoeae NCCP11945]
gi|268547530|gb|EEZ42948.1| holliday junction resolvase [Neisseria gonorrhoeae 35/02]
gi|268549980|gb|EEZ44999.1| holliday junction resolvase [Neisseria gonorrhoeae FA19]
gi|291011412|gb|EFE03408.1| holliday junction resolvase [Neisseria gonorrhoeae DGI2]
gi|291611599|gb|EFF40668.1| crossover junction endodeoxyribonuclease RuvC [Neisseria
gonorrhoeae F62]
gi|317163565|gb|ADV07106.1| Holliday junction resolvase [Neisseria gonorrhoeae TCDC-NG08107]
Length = 180
Score = 183 bits (464), Expect = 9e-45, Method: Composition-based stats.
Identities = 66/165 (40%), Positives = 103/165 (62%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M ++RI+GIDPG R TG+GI+DV G + +V+SG I + + LA R+ + + +V+
Sbjct: 3 MSATVRILGIDPGSRVTGFGIIDVRGRDHFYVASGCIKTPADEPLADRIAVIVRHIGEVV 62
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
++P++AAVEQVFVN + +TL LGQAR A+ + ++PVSEY +K+AV+G G
Sbjct: 63 AVYKPQQAAVEQVFVNVNPASTLMLGQARGAALAALVSHKLPVSEYTALQVKQAVVGKGK 122
Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
K+Q+ M+ ++ S DAAD LA+A+ HA + K+
Sbjct: 123 AAKEQVQHMVVQMLGLSGTPQADAADGLAVALTHALRNHGLAAKL 167
>gi|325199964|gb|ADY95419.1| crossover junction endodeoxyribonuclease RuvC [Neisseria
meningitidis H44/76]
Length = 180
Score = 183 bits (464), Expect = 9e-45, Method: Composition-based stats.
Identities = 66/165 (40%), Positives = 102/165 (61%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M S+RI+GIDPG R TG+G++DV G + +V+SG I + LA R+ + + +V+
Sbjct: 3 MAASVRILGIDPGSRVTGFGVIDVRGRDHFYVASGCIKTPADAPLADRIAVIVRHIGEVV 62
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
++P++AAVEQVFVN + +TL LGQAR A+ + ++PVSEY +K+AV+G G
Sbjct: 63 TVYKPQQAAVEQVFVNVNPASTLMLGQARGAALAALVSHKLPVSEYTALQVKQAVVGKGK 122
Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
K+Q+ M+ ++ S DAAD LA+A+ HA + K+
Sbjct: 123 AAKEQVQHMVVQMLGLSGTPQPDAADGLAVALTHALRNHGLAAKL 167
>gi|33598083|ref|NP_885726.1| Holliday junction resolvase [Bordetella parapertussis 12822]
gi|44888436|sp|Q7W4U0|RUVC_BORPA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|33566641|emb|CAE38851.1| crossover junction endodeoxyribonuclease [Bordetella parapertussis]
Length = 182
Score = 183 bits (464), Expect = 9e-45, Method: Composition-based stats.
Identities = 69/152 (45%), Positives = 99/152 (65%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+R++GIDPGLRRTG+G++D G L +V+SGTIV SL RL + + L +V + R
Sbjct: 1 MRVLGIDPGLRRTGFGVIDAEGMRLRYVASGTIVVPPALSLPERLKVILDNLREVARETR 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ AA+E VF+N + +TL LGQAR A+ + A + + V EY IKKAV+G G K+
Sbjct: 61 PDVAALEIVFLNTNPASTLLLGQARGAALCALADSALDVHEYTALQIKKAVVGTGRAAKE 120
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
Q+ MM++ L+ D+ADALA A+CHA+
Sbjct: 121 QVQMMVQRLLSLDGTPAPDSADALACAICHAH 152
>gi|121635109|ref|YP_975354.1| Holliday junction resolvase [Neisseria meningitidis FAM18]
gi|120866815|emb|CAM10573.1| crossover junction endodeoxyribonuclease [Neisseria meningitidis
FAM18]
Length = 180
Score = 183 bits (464), Expect = 1e-44, Method: Composition-based stats.
Identities = 66/165 (40%), Positives = 102/165 (61%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M ++RI+GIDPG R TG+GI+DV G + +V+SG I + LA R+ + + +V+
Sbjct: 3 MSATVRILGIDPGSRVTGFGIIDVRGRDHFYVASGCIKTPPDAPLADRIAVIVRHIGEVV 62
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
++P++AAVEQVFVN + +TL LGQAR A+ + ++PVSEY +K+AV+G G
Sbjct: 63 AVYKPQQAAVEQVFVNVNPASTLMLGQARGAALAALVSHKLPVSEYTALQVKQAVVGKGK 122
Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
K+Q+ M+ ++ S DAAD LA+A+ HA + K+
Sbjct: 123 AAKEQVQHMVVQMLGLSGTPQADAADGLAVALTHALRNHGLAAKL 167
>gi|299144014|ref|ZP_07037094.1| crossover junction endodeoxyribonuclease RuvC [Peptoniphilus sp.
oral taxon 386 str. F0131]
gi|298518499|gb|EFI42238.1| crossover junction endodeoxyribonuclease RuvC [Peptoniphilus sp.
oral taxon 386 str. F0131]
Length = 164
Score = 182 bits (463), Expect = 1e-44, Method: Composition-based stats.
Identities = 56/152 (36%), Positives = 88/152 (57%), Gaps = 1/152 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ I+GIDPG G+GI++V G+ + G I + + S RL ++Y L D++K ++
Sbjct: 1 MIILGIDPGFAIVGYGIIEVVGNKYKVLDYGAITTDSKMSFPLRLEKIYLKLEDLVKKYK 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P++ A E++F NK+A + + AR + IL L + EY P IK+A+ G G +KK
Sbjct: 61 PDDIAFEELFFNKNAKTAMAVSHARGVMILCGKLNHKELFEYTPLQIKQAIAGYGRAEKK 120
Query: 125 QIHMMLKMLMPESF-FKGKDAADALAIAVCHA 155
QI M+K ++ K D ADALA+A+ HA
Sbjct: 121 QIQEMVKFILKLKETPKPDDVADALAVAITHA 152
>gi|291530843|emb|CBK96428.1| crossover junction endodeoxyribonuclease RuvC [Eubacterium siraeum
70/3]
Length = 167
Score = 182 bits (463), Expect = 1e-44, Method: Composition-based stats.
Identities = 56/166 (33%), Positives = 91/166 (54%), Gaps = 1/166 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RIIGIDPG G+G+VD G G I + RLC++YE ++ +W+
Sbjct: 1 MRIIGIDPGYAIVGFGVVDYIGGKFSVKDFGAITTDKDTPFPKRLCEIYEDYCQILDSWK 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ ++E+++ + + + QAR I I++ A I ++EY P +K+AV+G G +KK
Sbjct: 61 PDALSIERLYFTNNQKTGIDVAQARGIIIMAAAQRGIEINEYTPLQVKQAVVGYGQAEKK 120
Query: 125 QIHMMLKMLMPES-FFKGKDAADALAIAVCHAYHANSGYYKIASQD 169
Q+ M K ++ S K D ADALA+ +CHA + S I + +
Sbjct: 121 QVQEMTKNILKLSCVPKPDDTADALAMTICHAQTSGSLLRNIKASN 166
>gi|225018934|ref|ZP_03708126.1| hypothetical protein CLOSTMETH_02885 [Clostridium methylpentosum
DSM 5476]
gi|224948278|gb|EEG29487.1| hypothetical protein CLOSTMETH_02885 [Clostridium methylpentosum
DSM 5476]
Length = 180
Score = 182 bits (463), Expect = 1e-44, Method: Composition-based stats.
Identities = 52/167 (31%), Positives = 84/167 (50%), Gaps = 1/167 (0%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M + ++IIGIDPG GWG+V + G I + RL +Y L ++
Sbjct: 1 MDEQMKIIGIDPGYAIVGWGVVSYNRTKFTTLDYGAITTHASMPFEQRLLAVYNELDLLL 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
+ +P+ +VE++F + + + + QAR + +L+ IP +Y P +K +V+G G
Sbjct: 61 RMHKPDAMSVEKLFFSNNQKTAIDVAQARGVILLAATQHGIPCYQYTPLQVKLSVVGYGK 120
Query: 121 GDKKQIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHANSGYYKIA 166
K Q+ M K L+ K D ADALAIA+ HA+ NS ++
Sbjct: 121 AVKSQVMEMTKRLLHLKEVPKPDDTADALAIAITHAHSFNSRISSVS 167
>gi|164687539|ref|ZP_02211567.1| hypothetical protein CLOBAR_01180 [Clostridium bartlettii DSM
16795]
gi|164603313|gb|EDQ96778.1| hypothetical protein CLOBAR_01180 [Clostridium bartlettii DSM
16795]
Length = 165
Score = 182 bits (463), Expect = 1e-44, Method: Composition-based stats.
Identities = 51/153 (33%), Positives = 84/153 (54%), Gaps = 1/153 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ I+GIDPG+ G+GI++ + + G + + RL +Y+G+ +IK +
Sbjct: 1 MVILGIDPGIAIVGYGIIEYKNNKFRVIDYGAVTTNANTPTDQRLALVYKGIDILIKKYD 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
+E A+E++F NK+ + + QAR + +L+ P+ EY P +K+ V+G G K
Sbjct: 61 IDEVAIEELFFNKNVKTAITVAQARGVIMLACTHNGKPIYEYTPLQVKQGVVGYGRAQKM 120
Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAY 156
Q+ M+ L+ K D ADALAIAVCHA+
Sbjct: 121 QVQQMVTSLLKLKEIPKPDDTADALAIAVCHAH 153
>gi|308389525|gb|ADO31845.1| crossover junction endodeoxyribonuclease [Neisseria meningitidis
alpha710]
gi|325130496|gb|EGC53253.1| crossover junction endodeoxyribonuclease RuvC [Neisseria
meningitidis OX99.30304]
Length = 178
Score = 182 bits (463), Expect = 1e-44, Method: Composition-based stats.
Identities = 66/165 (40%), Positives = 101/165 (61%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M ++RI+GIDPG R TG+GI+DV G + +V+SG I + LA R+ + + +V+
Sbjct: 1 MSATVRILGIDPGSRVTGFGIIDVRGRDHFYVASGCIKTPPDAPLADRIAVIVRHIGEVV 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
++P++AAVEQVFVN + +TL LGQAR A+ + +PVSEY +K+AV+G G
Sbjct: 61 AVYKPQQAAVEQVFVNVNPASTLMLGQARGAALAALVSHGLPVSEYTALQVKQAVVGKGK 120
Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
K+Q+ M+ ++ S DAAD LA+A+ HA + K+
Sbjct: 121 AAKEQVQHMVVQMLGLSGTPQADAADGLAVALTHALRNHGLAAKL 165
>gi|254805201|ref|YP_003083422.1| crossover junction endodeoxyribonuclease RuvC [Neisseria
meningitidis alpha14]
gi|254668743|emb|CBA06590.1| crossover junction endodeoxyribonuclease RuvC [Neisseria
meningitidis alpha14]
Length = 178
Score = 182 bits (463), Expect = 1e-44, Method: Composition-based stats.
Identities = 65/165 (39%), Positives = 102/165 (61%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M ++RI+GIDPG R TG+G++DV G + +V+SG I + LA R+ + + +V+
Sbjct: 1 MSATVRILGIDPGSRVTGFGVIDVRGRDHFYVASGCIKTPADAPLADRIAVIVRHIGEVV 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
++P++AAVEQVFVN + +TL LGQAR A+ + ++PVSEY +K+AV+G G
Sbjct: 61 AVYKPQQAAVEQVFVNVNPASTLMLGQARGAALAALVSHKLPVSEYTALQVKQAVVGKGK 120
Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
K+Q+ M+ ++ S DAAD LA+A+ HA + K+
Sbjct: 121 AAKEQVQHMVVQMLGLSGTPQADAADGLAVALTHALRNHGLAAKL 165
>gi|313895597|ref|ZP_07829153.1| crossover junction endodeoxyribonuclease RuvC [Selenomonas sp. oral
taxon 137 str. F0430]
gi|312975723|gb|EFR41182.1| crossover junction endodeoxyribonuclease RuvC [Selenomonas sp. oral
taxon 137 str. F0430]
Length = 164
Score = 182 bits (463), Expect = 1e-44, Method: Composition-based stats.
Identities = 55/161 (34%), Positives = 89/161 (55%), Gaps = 1/161 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ ++GIDPG G+G V+ G L + G I + + RL ++Y L ++I+ R
Sbjct: 1 MLVLGIDPGTAICGYGFVEQIGSRLVPHAYGAITTPSKMQPERRLLKIYTELENLIQEHR 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P +EQ+F N++ + +GQAR IA+L+ A IP+ E+ P +K+AV G G K+
Sbjct: 61 PSAIGIEQLFFNRNVTTAIPVGQARGIALLAAAKNDIPIVEHTPLQVKQAVTGYGKATKE 120
Query: 125 QIHMMLKMLMPESFFK-GKDAADALAIAVCHAYHANSGYYK 164
Q+ M+ L+ D ADALA+A+C AY +S ++
Sbjct: 121 QVIYMVTKLLHLPEPPYPDDTADALAVAICTAYCVDSIAWR 161
>gi|326201640|ref|ZP_08191511.1| crossover junction endodeoxyribonuclease RuvC [Clostridium
papyrosolvens DSM 2782]
gi|325988240|gb|EGD49065.1| crossover junction endodeoxyribonuclease RuvC [Clostridium
papyrosolvens DSM 2782]
Length = 166
Score = 182 bits (463), Expect = 1e-44, Method: Composition-based stats.
Identities = 53/158 (33%), Positives = 86/158 (54%), Gaps = 1/158 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ I+GIDPG TG+G+V G+ + I + + RL LY L +I ++
Sbjct: 1 MIIMGIDPGFAITGYGVVKYEGNKFSVLDYSAITTGASMKFSDRLLVLYNELEKLIDKYK 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ ++E++F NK+ L +G R +A+L+ A + I + EY P +K++V+G G +K
Sbjct: 61 PDAISIEELFFNKNIKTALTVGHGRGVAVLAAAKSGIDIFEYTPLQVKQSVVGYGRAEKA 120
Query: 125 QIHMMLKMLMPES-FFKGKDAADALAIAVCHAYHANSG 161
QI M+K ++ K D ADALA+A+CH G
Sbjct: 121 QIQQMVKAILNLPAIPKPDDVADALAVAICHGNSHRMG 158
>gi|108804161|ref|YP_644098.1| crossover junction endodeoxyribonuclease RuvC [Rubrobacter
xylanophilus DSM 9941]
gi|123368178|sp|Q1AWE2|RUVC_RUBXD RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|108765404|gb|ABG04286.1| crossover junction endodeoxyribonuclease RuvC [Rubrobacter
xylanophilus DSM 9941]
Length = 179
Score = 182 bits (463), Expect = 1e-44, Method: Composition-based stats.
Identities = 61/162 (37%), Positives = 94/162 (58%), Gaps = 2/162 (1%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
I+GIDPG GWG+V G L +V G I + + RL +L+ G+T++I+ +RP
Sbjct: 10 ILGIDPGTATMGWGVVRQEGSRLRYVQHGAITTPSGWGMPRRLDRLFAGVTELIRGYRPS 69
Query: 67 EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
AVE++F N + + +GQAR +A+L+ A + V EY P +K+A+ G DK+Q+
Sbjct: 70 AVAVEELFFNTNVTTAITVGQARGVALLAAYRAGVEVFEYTPLQVKQAITSYGRADKRQV 129
Query: 127 HMMLKMLMPE-SFFKGKDAADALAIAVCHAY-HANSGYYKIA 166
M++ L+ S + DAAD LAIA+CHA+ H S +
Sbjct: 130 QEMVRALLGLRSIPRPDDAADGLAIAICHAFSHRMSAATGVG 171
>gi|238026247|ref|YP_002910478.1| Holliday junction resolvase [Burkholderia glumae BGR1]
gi|237875441|gb|ACR27774.1| Crossover junction endodeoxyribonuclease RuvC [Burkholderia glumae
BGR1]
Length = 180
Score = 182 bits (463), Expect = 1e-44, Method: Composition-based stats.
Identities = 69/152 (45%), Positives = 103/152 (67%), Gaps = 1/152 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RIIGIDPGLR TG+G++DV G L +V+SG I + LA RL +++G++ +++ +R
Sbjct: 1 MRIIGIDPGLRVTGFGVIDVHGSKLAYVTSGVIRTPS-ADLAVRLGTIFDGVSTLVREYR 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P++AA+E+VFVN + +TL LGQAR AI +PV+EY P +K+A++G G K+
Sbjct: 60 PDQAAIEKVFVNVNPQSTLLLGQARGAAICGLVSGSLPVAEYTPTQLKQAIVGYGRATKE 119
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
Q+ M+ L+ S G DAADAL A+CHA+
Sbjct: 120 QMQQMVVRLLGLSGLPGTDAADALGTAICHAH 151
>gi|330828880|ref|YP_004391832.1| Crossover junction endodeoxyribonuclease ruvC [Aeromonas veronii
B565]
gi|328804016|gb|AEB49215.1| Crossover junction endodeoxyribonuclease ruvC [Aeromonas veronii
B565]
Length = 169
Score = 182 bits (462), Expect = 1e-44, Method: Composition-based stats.
Identities = 66/161 (40%), Positives = 102/161 (63%), Gaps = 2/161 (1%)
Query: 8 IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEE 67
+GIDPG R TG+G++ V G ++ SG I + + L RL Q+Y+G+ ++I ++P E
Sbjct: 1 MGIDPGSRITGYGVIRVVGGKAEYLGSGCIRTDCGE-LPERLKQVYDGVCEIITQFKPTE 59
Query: 68 AAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIH 127
A+E+VF+ ++A + LKLGQAR AI++ A +PVSEY+ IK+AV+G G K+Q+
Sbjct: 60 FAIERVFMARNADSALKLGQARGSAIVAAVNAYLPVSEYSATQIKQAVVGTGGAAKEQVQ 119
Query: 128 MMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
M+ L+ S DAADAL +A+CH + S K+A +
Sbjct: 120 HMVTHLLKLSATPQADAADALGVALCHLHTRQS-LIKMAGR 159
>gi|313888451|ref|ZP_07822118.1| crossover junction endodeoxyribonuclease RuvC [Peptoniphilus harei
ACS-146-V-Sch2b]
gi|312845480|gb|EFR32874.1| crossover junction endodeoxyribonuclease RuvC [Peptoniphilus harei
ACS-146-V-Sch2b]
Length = 164
Score = 182 bits (462), Expect = 1e-44, Method: Composition-based stats.
Identities = 46/151 (30%), Positives = 89/151 (58%), Gaps = 1/151 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ I+GIDPG+ G+G +++ G++ + G I + + L RL +YE + ++I+ ++
Sbjct: 1 MIILGIDPGIAIVGYGFLELKGNSYKVLDYGAITTEAKVPLPERLNTIYEEMNELIERYK 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P++ A E++F NK+ + + QAR + +L+ + + EY P +K+A++G G K
Sbjct: 61 PDDIAFEELFFNKNVKTAITVAQARGVEVLAAKESGAGLYEYTPLQVKQAIVGYGRATKN 120
Query: 125 QIHMMLKMLMPESF-FKGKDAADALAIAVCH 154
Q+ M+++++ K D ADALA+A+ H
Sbjct: 121 QVQEMVRIILNLEKVPKPDDVADALAVAITH 151
>gi|145298296|ref|YP_001141137.1| Holliday junction resolvase [Aeromonas salmonicida subsp.
salmonicida A449]
gi|166231576|sp|A4SKG7|RUVC_AERS4 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|142851068|gb|ABO89389.1| crossover junction endodeoxyribonuclease RuvC [Aeromonas
salmonicida subsp. salmonicida A449]
Length = 173
Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats.
Identities = 65/163 (39%), Positives = 104/163 (63%), Gaps = 2/163 (1%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ + ++ SG I + + L RL Q+Y+G++++I ++P
Sbjct: 3 IILGIDPGSRITGYGVIRIVAGKAEYLGSGCIRTDFGE-LPSRLKQVYDGVSEIITQFKP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+E A+E+VF+ ++A + LKLGQAR AI++ A +PVSEY+ IK+AV+G G K+Q
Sbjct: 62 DEFAIERVFMARNADSALKLGQARGSAIVAAVNALLPVSEYSATQIKQAVVGTGGAAKEQ 121
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
+ M+ L+ S DAADAL +A+CH + S K+A +
Sbjct: 122 VQHMVTHLLKLSATPQADAADALGVAICHFHTRQS-LIKMAGR 163
>gi|253574943|ref|ZP_04852283.1| crossover junction endodeoxyribonuclease RuvC [Paenibacillus sp.
oral taxon 786 str. D14]
gi|251845989|gb|EES73997.1| crossover junction endodeoxyribonuclease RuvC [Paenibacillus sp.
oral taxon 786 str. D14]
Length = 167
Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats.
Identities = 51/154 (33%), Positives = 90/154 (58%), Gaps = 1/154 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPG+ G+G +D G+ + V G I + RL +YE + +I ++
Sbjct: 1 MRILGIDPGIAIVGFGFIDKQGNRVTPVQYGCIQTEAHTPEEERLMHVYEAMVQLIDKYK 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ A E++F N++ + + QAR + +L+ A +P++EY P +K+A++G G +K+
Sbjct: 61 PDAVAFEKLFFNRNVTTAMSVSQARGVLVLAAAQKGLPIAEYTPMQVKQAIVGYGKAEKR 120
Query: 125 QIHMMLKMLMPES-FFKGKDAADALAIAVCHAYH 157
Q+ M +M + K D ADAL++A+CHA+
Sbjct: 121 QVQEMTRMFLKLQAIPKPDDVADALSVAICHAHS 154
>gi|313667871|ref|YP_004048155.1| crossover junction endodeoxyribonuclease [Neisseria lactamica
ST-640]
gi|313005333|emb|CBN86766.1| crossover junction endodeoxyribonuclease [Neisseria lactamica
020-06]
Length = 178
Score = 181 bits (461), Expect = 2e-44, Method: Composition-based stats.
Identities = 66/165 (40%), Positives = 102/165 (61%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M ++RI+GIDPG R TG+GI+DV G + +V+SG I + LA R+ + + +V+
Sbjct: 1 MSATVRILGIDPGSRVTGFGIIDVRGRDHFYVASGCIKTPADAPLADRIAVIVRHIGEVV 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
++P++AAVEQVFVN + +TL LGQAR A+ + ++PVSEY +K+AV+G G
Sbjct: 61 AVYKPQQAAVEQVFVNVNPASTLMLGQARGAALAALVSHKLPVSEYTALQVKQAVVGKGK 120
Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
K+Q+ M+ ++ S DAAD LA+A+ HA + K+
Sbjct: 121 AAKEQVQHMVVQMLGLSGTPQADAADGLAVALTHALRNHGLAAKL 165
>gi|304387249|ref|ZP_07369445.1| crossover junction endoribonuclease subunit C [Neisseria
meningitidis ATCC 13091]
gi|304338716|gb|EFM04830.1| crossover junction endoribonuclease subunit C [Neisseria
meningitidis ATCC 13091]
Length = 180
Score = 181 bits (461), Expect = 2e-44, Method: Composition-based stats.
Identities = 66/165 (40%), Positives = 102/165 (61%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M ++RI+GIDPG R TG+G++DV G N +V+SG I + LA R+ + + +V+
Sbjct: 3 MAATVRILGIDPGSRVTGFGVIDVRGRNHFYVASGCIKTPADAPLADRIAVIVRHIGEVV 62
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
++P++AAVEQVFVN + +TL LGQAR A+ + ++PVSEY +K+AV+G G
Sbjct: 63 AVYKPQQAAVEQVFVNVNPASTLMLGQARGAALAALVSHKLPVSEYTALQVKQAVVGKGK 122
Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
K+Q+ M+ ++ S DAAD LA+A+ HA + K+
Sbjct: 123 AAKEQVQHMVVQMLGLSGTPQADAADGLAVALTHALRNHGLAAKL 167
>gi|187611525|sp|A9M0D4|RUVC_NEIM0 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
Length = 178
Score = 181 bits (461), Expect = 2e-44, Method: Composition-based stats.
Identities = 65/165 (39%), Positives = 102/165 (61%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M S+RI+GIDPG R TG+G++DV G + +V+SG I + LA R+ + + +V+
Sbjct: 1 MAASVRILGIDPGSRVTGFGVIDVRGRDHFYVASGCIKTPADAPLADRIAVIVRHIGEVV 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
++P++AAVEQVFVN + +TL LGQAR A+ + ++PVSEY +K+AV+G G
Sbjct: 61 AVYKPQQAAVEQVFVNVNPASTLMLGQARGAALAALVSHKLPVSEYTALQVKQAVVGKGK 120
Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
K+Q+ M+ ++ S DAAD LA+A+ HA + ++
Sbjct: 121 AAKEQVQHMVVQMLGLSGTPQADAADGLAVALTHALRNHGLASRL 165
>gi|329120727|ref|ZP_08249389.1| crossover junction endoribonuclease subunit C [Neisseria
bacilliformis ATCC BAA-1200]
gi|327460524|gb|EGF06860.1| crossover junction endoribonuclease subunit C [Neisseria
bacilliformis ATCC BAA-1200]
Length = 179
Score = 181 bits (461), Expect = 2e-44, Method: Composition-based stats.
Identities = 67/164 (40%), Positives = 100/164 (60%)
Query: 2 RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
K +RI+GIDPG R TG+GI+D+ G +V+SG I + LA R+ + E L ++I
Sbjct: 3 NKPLRILGIDPGSRTTGFGIIDLIGREHHYVASGCIKTIAGDELAGRIGVIVENLAEIID 62
Query: 62 NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
+RP++AAVE+VFVN + +TL LGQAR A+ + + +PV EY +K+AV+G G
Sbjct: 63 CYRPQQAAVEKVFVNANPASTLMLGQARGAAVAALVMRGLPVYEYTALQVKQAVVGQGKA 122
Query: 122 DKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
K+Q+ M+ ++ S DAAD LA A+ HA NS ++
Sbjct: 123 AKEQVQHMVVRMLRLSGTPQPDAADGLATALTHALRNNSLAARL 166
>gi|323496588|ref|ZP_08101641.1| Holliday junction resolvase [Vibrio sinaloensis DSM 21326]
gi|323318334|gb|EGA71292.1| Holliday junction resolvase [Vibrio sinaloensis DSM 21326]
Length = 173
Score = 181 bits (461), Expect = 2e-44, Method: Composition-based stats.
Identities = 63/162 (38%), Positives = 102/162 (62%), Gaps = 2/162 (1%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
I+GIDPG R TG+G++ G +L ++ SG I + ++ L RL Q++ G++++I ++P+
Sbjct: 4 ILGIDPGSRITGYGVIRQNGRHLQYLGSGCIRTSEKE-LPGRLKQIFAGVSEIITQFQPD 62
Query: 67 EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
A+EQVF+ ++A + LKLGQAR AI++ +PV EYA IK+AV G G DK+Q+
Sbjct: 63 VFAIEQVFMARNADSALKLGQARGSAIVAAVNNDLPVYEYAARLIKQAVTGTGGADKEQV 122
Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
M++ ++ DAADAL +A+CHA + +A +
Sbjct: 123 QHMVQQMLKLPGKPQADAADALGVAICHANTNKT-LIAMAGK 163
>gi|317402226|gb|EFV82815.1| crossover junction endodeoxyribonuclease ruvC [Achromobacter
xylosoxidans C54]
Length = 182
Score = 181 bits (461), Expect = 2e-44, Method: Composition-based stats.
Identities = 67/152 (44%), Positives = 100/152 (65%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+R++GIDPGLRRTG+G++D G L +V+SGTIV +L+ RL + + L V ++ +
Sbjct: 1 MRVLGIDPGLRRTGFGVIDADGPRLRYVASGTIVVPPALTLSERLKVILDNLRQVARDTQ 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ AA+E VF+N + +TL LGQAR A+ + A + + V EY IKKAV+G G K+
Sbjct: 61 PDVAALEIVFLNTNPASTLLLGQARGAALCALADSSLAVHEYTALQIKKAVVGTGRAAKE 120
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
Q+ MM++ L+ D+ADALA A+CHA+
Sbjct: 121 QVQMMVQHLLALDGTPAPDSADALACAICHAH 152
>gi|170693380|ref|ZP_02884539.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
graminis C4D1M]
gi|170141535|gb|EDT09704.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
graminis C4D1M]
Length = 180
Score = 181 bits (461), Expect = 2e-44, Method: Composition-based stats.
Identities = 66/163 (40%), Positives = 102/163 (62%), Gaps = 2/163 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPGLR TG+G++D +G L +V+SG I + L RL ++EG++ +I+
Sbjct: 1 MRILGIDPGLRVTGFGVIDQSGHTLSYVASGVIKT-ADTDLPSRLGTIFEGISTLIRQHS 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+++A+E+VFVN + +TL LGQAR AI +PV+EY +K+AV+G G K+
Sbjct: 60 PDQSAIEKVFVNVNPQSTLLLGQARGAAICGLVAGGVPVAEYTALQLKQAVVGYGRATKE 119
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
Q+ M+ L+ S G DAADAL +A+CHA+ + +
Sbjct: 120 QMQQMVVRLLNLSGVPGTDAADALGMAICHAH-GGTTLSTLGG 161
>gi|325479411|gb|EGC82507.1| crossover junction endodeoxyribonuclease RuvC [Anaerococcus
prevotii ACS-065-V-Col13]
Length = 164
Score = 181 bits (460), Expect = 2e-44, Method: Composition-based stats.
Identities = 52/156 (33%), Positives = 88/156 (56%), Gaps = 1/156 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ I+GIDPG+ G+G+++ + + + +G I + + RL LY+ L D+I +
Sbjct: 1 MIILGIDPGIAIMGYGVIEFKNNKVKVLENGVITTSSKTKTGKRLELLYDNLDDIINEFS 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+E A+E++F N + + +G AR I +L +P+ EY P IK+A+ G G +KK
Sbjct: 61 PDEFAIEELFFNANVKTAITVGHARGIQVLCAQKNNLPIYEYTPLQIKQAITGYGRANKK 120
Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHAN 159
Q+ + + L+ K DAADAL++A+CHA
Sbjct: 121 QMQLTITKLLNLKEIPKPDDAADALSVALCHALSQR 156
>gi|167750453|ref|ZP_02422580.1| hypothetical protein EUBSIR_01429 [Eubacterium siraeum DSM 15702]
gi|167656604|gb|EDS00734.1| hypothetical protein EUBSIR_01429 [Eubacterium siraeum DSM 15702]
Length = 167
Score = 181 bits (460), Expect = 2e-44, Method: Composition-based stats.
Identities = 56/166 (33%), Positives = 89/166 (53%), Gaps = 1/166 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RIIGIDPG G+G+VD G G I + RLC++YE ++ NW+
Sbjct: 1 MRIIGIDPGYAIVGFGVVDYIGGKFSVKDFGAITTDKDTPFPKRLCEIYEDYCQILDNWK 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ ++E+++ + + + QAR I I++ A I ++EY P +K+AV+G G KK
Sbjct: 61 PDALSIERLYFTNNQKTGIDVAQARGIIIMAAAQRGIEINEYTPLQVKQAVVGYGQAVKK 120
Query: 125 QIHMMLKMLMPES-FFKGKDAADALAIAVCHAYHANSGYYKIASQD 169
Q+ M K ++ K D ADALA+ +CHA + S I + +
Sbjct: 121 QVQEMTKNILKLPFVPKPDDTADALAMTICHAQTSGSLLRNIKTSN 166
>gi|294788095|ref|ZP_06753339.1| crossover junction endodeoxyribonuclease RuvC [Simonsiella muelleri
ATCC 29453]
gi|294484388|gb|EFG32071.1| crossover junction endodeoxyribonuclease RuvC [Simonsiella muelleri
ATCC 29453]
Length = 179
Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats.
Identities = 65/167 (38%), Positives = 100/167 (59%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M + +R++GIDPG R TG+GI+D+ G +V+SG I + LA R+ + + + ++I
Sbjct: 3 MSRPVRVLGIDPGSRTTGFGIIDLVGREYQYVASGCIRTIPNDELAGRIGVIVQHIDEII 62
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
+ +RP +AA+EQVFVN + ATL LGQAR AI + L +PV EY +K+AV+G G
Sbjct: 63 ETYRPNQAAIEQVFVNVNPKATLMLGQARGAAIAALVLRGLPVHEYTALQVKQAVVGQGK 122
Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
K+Q+ M+ ++ S DAAD LA+A+ HA ++
Sbjct: 123 AAKEQVQHMVVNMLKLSGTPQADAADGLAVALTHALRGYGLAGRLGG 169
>gi|161870284|ref|YP_001599454.1| Holliday junction resolvase [Neisseria meningitidis 053442]
gi|161595837|gb|ABX73497.1| crossover junction endodeoxyribonuclease [Neisseria meningitidis
053442]
Length = 180
Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats.
Identities = 65/165 (39%), Positives = 102/165 (61%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M S+RI+GIDPG R TG+G++DV G + +V+SG I + LA R+ + + +V+
Sbjct: 3 MAASVRILGIDPGSRVTGFGVIDVRGRDHFYVASGCIKTPADAPLADRIAVIVRHIGEVV 62
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
++P++AAVEQVFVN + +TL LGQAR A+ + ++PVSEY +K+AV+G G
Sbjct: 63 AVYKPQQAAVEQVFVNVNPASTLMLGQARGAALAALVSHKLPVSEYTALQVKQAVVGKGK 122
Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
K+Q+ M+ ++ S DAAD LA+A+ HA + ++
Sbjct: 123 AAKEQVQHMVVQMLGLSGTPQADAADGLAVALTHALRNHGLASRL 167
>gi|187925316|ref|YP_001896958.1| Holliday junction resolvase [Burkholderia phytofirmans PsJN]
gi|238689471|sp|B2SYJ9|RUVC_BURPP RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|187716510|gb|ACD17734.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
phytofirmans PsJN]
Length = 180
Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats.
Identities = 66/163 (40%), Positives = 103/163 (63%), Gaps = 2/163 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPGLR TG+G++D +G L +V+SG I + L RL ++EG++ +I+
Sbjct: 1 MRILGIDPGLRVTGFGVIDQSGHTLSYVASGVIKT-ADADLPSRLGTIFEGISTLIRQHS 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+++A+E+VFVN + +TL LGQAR AI + +PV+EY +K+AV+G G K+
Sbjct: 60 PDQSAIEKVFVNVNPQSTLLLGQARGAAICGLVASGVPVAEYTALQLKQAVVGYGRATKE 119
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
Q+ M+ L+ S G DAADAL +A+CHA+ + +
Sbjct: 120 QMQQMVVRLLNLSGVPGTDAADALGMAICHAH-GGTTLSTLGG 161
>gi|323495174|ref|ZP_08100259.1| Holliday junction resolvase [Vibrio brasiliensis LMG 20546]
gi|323310614|gb|EGA63793.1| Holliday junction resolvase [Vibrio brasiliensis LMG 20546]
Length = 173
Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats.
Identities = 65/162 (40%), Positives = 103/162 (63%), Gaps = 2/162 (1%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
I+GIDPG R TG+G++ G +L ++ SG I + ++ L RL Q+Y G++++I ++P+
Sbjct: 4 ILGIDPGSRITGYGVIRQNGRHLQYLGSGCIRTSEKE-LPGRLKQIYAGVSEIITQFQPD 62
Query: 67 EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
A+EQVF+ ++A + LKLGQAR AI++ A +PV EYA IK+AV G G DK+Q+
Sbjct: 63 VFAIEQVFMARNADSALKLGQARGSAIVAAVNADLPVYEYAARLIKQAVTGTGGADKEQV 122
Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
M++ ++ DAADAL +A+CHA + +A +
Sbjct: 123 QHMVQQMLKLPGKPQADAADALGVAICHANTNKT-LIAMAGK 163
>gi|261392322|emb|CAX49849.1| crossover junction endodeoxyribonuclease RuvC (Holliday junction
nuclease RuvC; Holliday junction resolvase RuvC)
[Neisseria meningitidis 8013]
Length = 178
Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats.
Identities = 66/165 (40%), Positives = 102/165 (61%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M S+RI+GIDPG R TG+G++DV G + +V+SG I + LA R+ + + +V+
Sbjct: 1 MAASVRILGIDPGSRVTGFGVIDVRGRDHFYVASGCIKTPADAPLADRIAVIVRHIGEVV 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
++P++AAVEQVFVN + +TL LGQAR A+ + ++PVSEY +K+AV+G G
Sbjct: 61 AVYKPQQAAVEQVFVNVNPASTLMLGQARGAALAALVSHKLPVSEYTALQVKQAVVGKGK 120
Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
K+Q+ M+ ++ S DAAD LA+A+ HA + K+
Sbjct: 121 AAKEQVQHMVVQMLGLSGTPQADAADGLAVALTHALRNHGLAAKL 165
>gi|269215241|ref|ZP_05987996.2| crossover junction endodeoxyribonuclease RuvC [Neisseria lactamica
ATCC 23970]
gi|269207977|gb|EEZ74432.1| crossover junction endodeoxyribonuclease RuvC [Neisseria lactamica
ATCC 23970]
Length = 178
Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats.
Identities = 65/165 (39%), Positives = 102/165 (61%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M ++RI+GIDPG R TG+G++DV G + +V+SG I + LA R+ + + +V+
Sbjct: 1 MAATVRILGIDPGSRVTGFGVIDVRGRDHFYVASGCIKTPADAPLADRIAVIVRHIGEVV 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
++P++AAVEQVFVN + +TL LGQAR A+ + ++PVSEY +K+AV+G G
Sbjct: 61 AVYKPQQAAVEQVFVNVNPASTLMLGQARGAALAALVSHKLPVSEYTALQVKQAVVGKGK 120
Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
K+Q+ M+ ++ S DAAD LA+A+ HA + K+
Sbjct: 121 AAKEQVQHMVVQMLGLSGTPQADAADGLAVALTHALRNHGLAAKL 165
>gi|114563353|ref|YP_750866.1| crossover junction endodeoxyribonuclease RuvC [Shewanella
frigidimarina NCIMB 400]
gi|122299597|sp|Q081N7|RUVC_SHEFN RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|114334646|gb|ABI72028.1| crossover junction endodeoxyribonuclease RuvC [Shewanella
frigidimarina NCIMB 400]
Length = 173
Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats.
Identities = 64/155 (41%), Positives = 95/155 (61%), Gaps = 1/155 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+G+DPG R TG+G++ G ++ SG I + L RL Q+Y GL ++I ++P
Sbjct: 3 IILGVDPGSRITGYGVIQCQGRQQIYLGSGCIRTSA-DDLPQRLQQIYAGLCEIITQYKP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+E A+E+VF+ K+A + LKLGQAR AI++ A +PV+EY+ IK AV+G G K Q
Sbjct: 62 DEFAIERVFMAKNADSALKLGQARGAAIVAATCAGLPVAEYSATQIKSAVVGTGRAQKTQ 121
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
+ M+K L+ DAADAL +A+CH + S
Sbjct: 122 VQHMIKQLLKLPASPQADAADALGVAICHFHTYQS 156
>gi|33602976|ref|NP_890536.1| Holliday junction resolvase [Bordetella bronchiseptica RB50]
gi|44888439|sp|Q7WGB7|RUVC_BORBR RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|33568607|emb|CAE34365.1| crossover junction endodeoxyribonuclease [Bordetella bronchiseptica
RB50]
Length = 182
Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats.
Identities = 68/152 (44%), Positives = 99/152 (65%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+R++GIDPGLRRTG+G++D G L +V+SGTIV +L RL + + L +V + R
Sbjct: 1 MRVLGIDPGLRRTGFGVIDAEGMRLRYVASGTIVVPPALALPERLKVILDNLREVARETR 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ AA+E VF+N + +TL LGQAR A+ + A + + V EY IKKAV+G G K+
Sbjct: 61 PDVAALEIVFLNTNPASTLLLGQARGAALCALADSALDVHEYTALQIKKAVVGTGRAAKE 120
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
Q+ MM++ L+ D+ADALA A+CHA+
Sbjct: 121 QVQMMVQRLLSLDGTPAPDSADALACAICHAH 152
>gi|254179003|ref|ZP_04885657.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia mallei
ATCC 10399]
gi|160694917|gb|EDP84925.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia mallei
ATCC 10399]
Length = 209
Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats.
Identities = 70/157 (44%), Positives = 104/157 (66%), Gaps = 1/157 (0%)
Query: 4 SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
S+RI+GIDPGLR TG+G++DV+G L +V+SG I + L RL +Y+G++ +I+
Sbjct: 29 SMRILGIDPGLRVTGFGVIDVSGHQLAYVASGVIKTPT-ADLPTRLGTIYDGVSTLIREH 87
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
P++AA+E+VFVN + +TL LGQAR AI +PV+EY +K+AV+G G K
Sbjct: 88 TPDQAAIEKVFVNVNPQSTLLLGQARGAAICGLVSGGLPVAEYTALQLKQAVVGYGRATK 147
Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
+Q+ M+ L+ S G DAADAL +A+CHA+ N+
Sbjct: 148 EQMQEMVARLLSLSGRPGTDAADALGMAICHAHGGNT 184
>gi|304320106|ref|YP_003853749.1| Holliday junction resolvase [Parvularcula bermudensis HTCC2503]
gi|303299009|gb|ADM08608.1| Holliday junction resolvase [Parvularcula bermudensis HTCC2503]
Length = 170
Score = 181 bits (459), Expect = 3e-44, Method: Composition-based stats.
Identities = 86/160 (53%), Positives = 109/160 (68%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M + +RIIGIDPGLR TGWG+++ G L FV+SG I + LA RL +L L V+
Sbjct: 1 MERCVRIIGIDPGLRATGWGVIETEGTRLRFVASGFIRPATKTDLAQRLYRLSCELAAVL 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
+ RP+EAAVE+ FVN D + LKLGQAR I + PA PV+EYAPNTIKKAV+GVGH
Sbjct: 61 DSHRPDEAAVEETFVNADPRSALKLGQARGICLAGPAALGCPVAEYAPNTIKKAVVGVGH 120
Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
DK+Q+ M+ L+P++ D ADALAIA+CHA H S
Sbjct: 121 ADKRQVAAMVARLLPKAGTPANDEADALAIAICHASHRGS 160
>gi|260768876|ref|ZP_05877810.1| crossover junction endodeoxyribonuclease RuvC [Vibrio furnissii CIP
102972]
gi|260616906|gb|EEX42091.1| crossover junction endodeoxyribonuclease RuvC [Vibrio furnissii CIP
102972]
gi|315180570|gb|ADT87484.1| Holliday junction resolvase [Vibrio furnissii NCTC 11218]
Length = 173
Score = 181 bits (459), Expect = 3e-44, Method: Composition-based stats.
Identities = 67/163 (41%), Positives = 102/163 (62%), Gaps = 2/163 (1%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G +L ++ SG I + + L RL Q+Y G++++I ++P
Sbjct: 3 IILGIDPGSRITGYGVIRQQGRHLQYLGSGCIRTSEK-DLPLRLKQIYAGVSEIITQFQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
E A+EQVF+ K+A + LKLGQAR AI++ A +PV EYA IK+AV+G G +K Q
Sbjct: 62 EVFAIEQVFMAKNADSALKLGQARGSAIVAAVNADLPVFEYAARLIKQAVVGNGGAEKAQ 121
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
+ M++ ++ DAADAL +A+CHA + +A Q
Sbjct: 122 VQHMVQQMLKLPAKPQADAADALGVAICHANTNKT-LIALAGQ 163
>gi|325201882|gb|ADY97336.1| crossover junction endodeoxyribonuclease RuvC [Neisseria
meningitidis M01-240149]
gi|325208365|gb|ADZ03817.1| crossover junction endodeoxyribonuclease RuvC [Neisseria
meningitidis NZ-05/33]
Length = 178
Score = 181 bits (459), Expect = 3e-44, Method: Composition-based stats.
Identities = 67/165 (40%), Positives = 103/165 (62%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M ++RI+GIDPG R TG+GI+DV G + +V+SG I + SLA R+ + + +V+
Sbjct: 1 MSATVRILGIDPGSRVTGFGIIDVRGRDHFYVASGCIKTPADASLADRIAVIVRHIGEVV 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
++P++AAVEQVFVN + +TL LGQAR A+ + ++PVSEY +K+AV+G G
Sbjct: 61 AVYKPQQAAVEQVFVNVNPASTLMLGQARGAALAALVSHKLPVSEYTALQVKQAVVGKGK 120
Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
K+Q+ M+ ++ S DAAD LA+A+ HA + K+
Sbjct: 121 AAKEQVQHMVVQMLGLSGTPQADAADGLAVALTHALRNHGLAAKL 165
>gi|296314361|ref|ZP_06864302.1| crossover junction endodeoxyribonuclease RuvC [Neisseria
polysaccharea ATCC 43768]
gi|296838917|gb|EFH22855.1| crossover junction endodeoxyribonuclease RuvC [Neisseria
polysaccharea ATCC 43768]
Length = 178
Score = 181 bits (459), Expect = 3e-44, Method: Composition-based stats.
Identities = 67/165 (40%), Positives = 102/165 (61%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M S+RI+GIDPG R TG+GI+DV G + +V+SG I + LA R+ + + +V+
Sbjct: 1 MAASVRILGIDPGSRVTGFGIIDVRGRDHFYVASGCIKTPTDAPLADRIAVIVRHIGEVV 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
++P++AAVEQVFVN + +TL LGQAR A+ + ++PVSEY +K+AV+G G
Sbjct: 61 AVYKPQQAAVEQVFVNVNPASTLMLGQARGAALAALVSHKLPVSEYTALQVKQAVVGKGK 120
Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
K+Q+ M+ ++ S DAAD LA+A+ HA + K+
Sbjct: 121 AAKEQVQHMVVQMLGLSGTPQADAADGLAVALTHALRNHGLAAKL 165
>gi|254669915|emb|CBA04466.1| crossover junction endodeoxyribonuclease [Neisseria meningitidis
alpha153]
Length = 178
Score = 181 bits (459), Expect = 3e-44, Method: Composition-based stats.
Identities = 67/165 (40%), Positives = 102/165 (61%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M S+RI+GIDPG R TG+GI+DV G + +V+SG I + LA R+ + + +V+
Sbjct: 1 MAASVRILGIDPGSRVTGFGIIDVRGRDHFYVASGCIKTPADAPLADRIAVIVRHIGEVV 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
++P++AAVEQVFVN + +TL LGQAR A+ + ++PVSEY +K+AV+G G
Sbjct: 61 AVYKPQQAAVEQVFVNVNPASTLMLGQARGAALAALVSHKLPVSEYTALQVKQAVVGKGK 120
Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
K+Q+ M+ ++ S DAAD LA+A+ HA + K+
Sbjct: 121 AAKEQVQHMVVQMLGLSGTPQADAADGLAVALTHALRNHGLAAKL 165
>gi|320528951|ref|ZP_08030043.1| crossover junction endodeoxyribonuclease RuvC [Selenomonas
artemidis F0399]
gi|320138581|gb|EFW30471.1| crossover junction endodeoxyribonuclease RuvC [Selenomonas
artemidis F0399]
Length = 164
Score = 181 bits (459), Expect = 4e-44, Method: Composition-based stats.
Identities = 55/161 (34%), Positives = 89/161 (55%), Gaps = 1/161 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ ++GIDPG G+G V+ G L + G I + + RL ++Y L ++I+ R
Sbjct: 1 MLVLGIDPGTAICGYGFVEQIGSRLVPHAYGAITTPSKMQPERRLLKIYTELENLIQEHR 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P +EQ+F N++ + +GQAR IA+L+ A IP+ E+ P +K+AV G G K+
Sbjct: 61 PSAIGIEQLFFNRNVTTAIPVGQARGIALLAAAKNDIPIVEHTPLQVKQAVTGYGKATKE 120
Query: 125 QIHMMLKMLMPESFFK-GKDAADALAIAVCHAYHANSGYYK 164
Q+ M+ L+ D ADALA+A+C AY +S ++
Sbjct: 121 QVIYMVTKLLHLPHPPYPDDTADALAVAICTAYCVDSIAWR 161
>gi|254506056|ref|ZP_05118200.1| crossover junction endodeoxyribonuclease RuvC [Vibrio
parahaemolyticus 16]
gi|219550874|gb|EED27855.1| crossover junction endodeoxyribonuclease RuvC [Vibrio
parahaemolyticus 16]
Length = 173
Score = 180 bits (458), Expect = 4e-44, Method: Composition-based stats.
Identities = 65/163 (39%), Positives = 102/163 (62%), Gaps = 2/163 (1%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G +L ++ SG I + + L RL Q+Y G++++I ++P
Sbjct: 3 IILGIDPGSRITGYGVIRQNGRHLHYLGSGCIRTSEK-DLPGRLKQIYAGVSEIITQFQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQVF+ ++A + LKLGQAR AI++ A +PV EYA IK+AV G G DK+Q
Sbjct: 62 DVFAIEQVFMARNADSALKLGQARGSAIVAAVNAELPVHEYAARLIKQAVTGTGGADKEQ 121
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
+ M++ ++ DAADAL +A+CHA + +A +
Sbjct: 122 VQHMVQQMLKLPGKPQADAADALGVAICHANTNKT-LIAMAGK 163
>gi|293603640|ref|ZP_06686061.1| crossover junction endoribonuclease subunit C [Achromobacter
piechaudii ATCC 43553]
gi|292818076|gb|EFF77136.1| crossover junction endoribonuclease subunit C [Achromobacter
piechaudii ATCC 43553]
Length = 182
Score = 180 bits (458), Expect = 4e-44, Method: Composition-based stats.
Identities = 68/152 (44%), Positives = 101/152 (66%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+R++GIDPGLRRTG+G++D G L +V+SGTIV +LA RL + + L +V ++ +
Sbjct: 1 MRVLGIDPGLRRTGFGVIDAEGSRLRYVASGTIVVPPALTLAERLKVILDNLREVARDTQ 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ AA+E VF+N + +TL LGQAR A+ + A + + V EY IKKAV+G G K+
Sbjct: 61 PDVAALEIVFLNTNPASTLLLGQARGAALCALADSSLAVHEYTALQIKKAVVGTGRAAKE 120
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
Q+ MM++ L+ D+ADALA A+CHA+
Sbjct: 121 QVQMMVQHLLSLDGVPAPDSADALACAICHAH 152
>gi|312127830|ref|YP_003992704.1| crossover junction endodeoxyribonuclease ruvc [Caldicellulosiruptor
hydrothermalis 108]
gi|312622646|ref|YP_004024259.1| crossover junction endodeoxyribonuclease ruvc [Caldicellulosiruptor
kronotskyensis 2002]
gi|311777849|gb|ADQ07335.1| crossover junction endodeoxyribonuclease RuvC [Caldicellulosiruptor
hydrothermalis 108]
gi|312203113|gb|ADQ46440.1| crossover junction endodeoxyribonuclease RuvC [Caldicellulosiruptor
kronotskyensis 2002]
Length = 164
Score = 180 bits (458), Expect = 4e-44, Method: Composition-based stats.
Identities = 53/159 (33%), Positives = 89/159 (55%), Gaps = 2/159 (1%)
Query: 8 IGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
+GIDPG+ TG+GI++ G + G I + + RL LY L +I ++P+
Sbjct: 2 LGIDPGIALTGYGIIESKNGSEFKVIDYGRIETSSSLKKSMRLLHLYTELCSIISLYQPD 61
Query: 67 EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
A+E++F +K++ + +G+AR + IL+ + + EY P +K+++ G G DK QI
Sbjct: 62 VVAIEELFFSKNSKTAITIGEARGVIILTCIQNNLSIYEYTPLQVKQSITGYGRADKTQI 121
Query: 127 HMMLKMLMPE-SFFKGKDAADALAIAVCHAYHANSGYYK 164
M+K L+ K D ADALA+A+CH ++S Y+
Sbjct: 122 QKMVKSLLGLSEIPKPDDVADALAVAMCHILSSSSVLYQ 160
>gi|254976402|ref|ZP_05272874.1| crossover junction endodeoxyribonuclease RuvC [Clostridium
difficile QCD-66c26]
gi|255093788|ref|ZP_05323266.1| crossover junction endodeoxyribonuclease RuvC [Clostridium
difficile CIP 107932]
gi|255101978|ref|ZP_05330955.1| crossover junction endodeoxyribonuclease RuvC [Clostridium
difficile QCD-63q42]
gi|255307846|ref|ZP_05352017.1| crossover junction endodeoxyribonuclease RuvC [Clostridium
difficile ATCC 43255]
gi|255315539|ref|ZP_05357122.1| crossover junction endodeoxyribonuclease RuvC [Clostridium
difficile QCD-76w55]
gi|255518202|ref|ZP_05385878.1| crossover junction endodeoxyribonuclease RuvC [Clostridium
difficile QCD-97b34]
gi|255651318|ref|ZP_05398220.1| crossover junction endodeoxyribonuclease RuvC [Clostridium
difficile QCD-37x79]
gi|255656791|ref|ZP_05402200.1| crossover junction endodeoxyribonuclease RuvC [Clostridium
difficile QCD-23m63]
gi|260684382|ref|YP_003215667.1| Holliday junction resolvase [Clostridium difficile CD196]
gi|260688041|ref|YP_003219175.1| Holliday junction resolvase [Clostridium difficile R20291]
gi|296452379|ref|ZP_06894080.1| crossover junction endoribonuclease subunit C [Clostridium
difficile NAP08]
gi|296877728|ref|ZP_06901755.1| crossover junction endoribonuclease subunit C [Clostridium
difficile NAP07]
gi|306521150|ref|ZP_07407497.1| Holliday junction resolvase [Clostridium difficile QCD-32g58]
gi|260210545|emb|CBA65077.1| crossover junction endodeoxyribonuclease RuvC [Clostridium
difficile CD196]
gi|260214058|emb|CBE06224.1| crossover junction endodeoxyribonuclease RuvC [Clostridium
difficile R20291]
gi|296258709|gb|EFH05603.1| crossover junction endoribonuclease subunit C [Clostridium
difficile NAP08]
gi|296431261|gb|EFH17081.1| crossover junction endoribonuclease subunit C [Clostridium
difficile NAP07]
Length = 169
Score = 180 bits (458), Expect = 4e-44, Method: Composition-based stats.
Identities = 50/154 (32%), Positives = 87/154 (56%), Gaps = 1/154 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ I+GIDPG+ G+GI++ + G + + +++ RL +Y+G+ ++KN+
Sbjct: 1 MIILGIDPGIAIVGYGIIEYKNSKFKVIDYGAVTTPAHMNISRRLELVYKGIDTIVKNYN 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
+E +E++F NK+ + + QAR + +L+ A PV EY P +K+ V+G G DK
Sbjct: 61 IDEVGMEELFFNKNVKTAITVAQARGVTMLACAHNGKPVYEYTPLQVKQGVVGYGRADKA 120
Query: 125 QIHMMLKMLMPESF-FKGKDAADALAIAVCHAYH 157
Q+ M+ + K D ADALA+A+CHA+
Sbjct: 121 QVQQMVTSFLSLKKVPKPDDVADALAVAICHAHS 154
>gi|161723182|ref|YP_441796.2| Holliday junction resolvase [Burkholderia thailandensis E264]
gi|167580617|ref|ZP_02373491.1| Holliday junction resolvase [Burkholderia thailandensis TXDOH]
gi|167618723|ref|ZP_02387354.1| Holliday junction resolvase [Burkholderia thailandensis Bt4]
gi|257137962|ref|ZP_05586224.1| Holliday junction resolvase [Burkholderia thailandensis E264]
gi|187611419|sp|Q2SZ53|RUVC_BURTA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
Length = 180
Score = 180 bits (458), Expect = 5e-44, Method: Composition-based stats.
Identities = 69/156 (44%), Positives = 103/156 (66%), Gaps = 1/156 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPGLR TG+G++DV+G L +V+SG I + L RL +Y+G++ +I+
Sbjct: 1 MRILGIDPGLRVTGFGVIDVSGHRLAYVASGVIKTPT-ADLPTRLGTIYDGVSTLIREHT 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P++AA+E+VFVN + +TL LGQAR AI +PV+EY +K+AV+G G K+
Sbjct: 60 PDQAAIEKVFVNVNPQSTLLLGQARGAAICGLVSGGLPVAEYTALQLKQAVVGYGRATKE 119
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
Q+ M+ L+ S G DAADAL +A+CHA+ N+
Sbjct: 120 QMQEMVARLLSLSGLPGTDAADALGMAICHAHGGNT 155
>gi|91785163|ref|YP_560369.1| Holliday junction resolvase [Burkholderia xenovorans LB400]
gi|296157350|ref|ZP_06840186.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia sp.
Ch1-1]
gi|123358466|sp|Q13UC2|RUVC_BURXL RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|91689117|gb|ABE32317.1| Crossover junction endodeoxyribonuclease RuvC [Burkholderia
xenovorans LB400]
gi|295892686|gb|EFG72468.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia sp.
Ch1-1]
Length = 180
Score = 180 bits (458), Expect = 5e-44, Method: Composition-based stats.
Identities = 66/163 (40%), Positives = 102/163 (62%), Gaps = 2/163 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPGLR TG+G++D +G L +V+SG I + L RL ++EG++ +I+
Sbjct: 1 MRILGIDPGLRVTGFGVIDQSGHTLSYVASGVIKT-ADADLPSRLGTIFEGISTLIRQHS 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+++A+E+VFVN + +TL LGQAR AI +PV+EY +K+AV+G G K+
Sbjct: 60 PDQSAIEKVFVNVNPQSTLLLGQARGAAICGLVAGGVPVAEYTALQLKQAVVGYGRATKE 119
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
Q+ M+ L+ S G DAADAL +A+CHA+ + +
Sbjct: 120 QMQQMVVRLLNLSGVPGTDAADALGMAICHAH-GGTTLSTLGG 161
>gi|261378951|ref|ZP_05983524.1| crossover junction endodeoxyribonuclease RuvC [Neisseria cinerea
ATCC 14685]
gi|269144652|gb|EEZ71070.1| crossover junction endodeoxyribonuclease RuvC [Neisseria cinerea
ATCC 14685]
Length = 178
Score = 180 bits (457), Expect = 5e-44, Method: Composition-based stats.
Identities = 65/166 (39%), Positives = 103/166 (62%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M ++RI+GIDPG R TG+G++DV G + +V+SG I + +LA R+ + + +V+
Sbjct: 1 MTATVRILGIDPGSRVTGFGVIDVRGRDHFYVASGCIKTPANAALADRIAVIVRHIGEVV 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
++P++AAVEQVFVN + +TL LGQAR A+ + +PVSEY +K+AV+G G
Sbjct: 61 TVYKPQQAAVEQVFVNVNPASTLMLGQARGAALAALVSHGLPVSEYTALQVKQAVVGKGK 120
Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
K+Q+ M+ ++ S DAAD LA+A+ HA + K++
Sbjct: 121 AAKEQVQHMVVQMLGLSGTPQSDAADGLAVALTHALRNHGLASKLS 166
>gi|297569180|ref|YP_003690524.1| crossover junction endodeoxyribonuclease RuvC [Desulfurivibrio
alkaliphilus AHT2]
gi|296925095|gb|ADH85905.1| crossover junction endodeoxyribonuclease RuvC [Desulfurivibrio
alkaliphilus AHT2]
Length = 167
Score = 180 bits (457), Expect = 6e-44, Method: Composition-based stats.
Identities = 64/159 (40%), Positives = 98/159 (61%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M RI+G+DPG R TG+GI++ G L F++ G + SLA R+ ++++GL +VI
Sbjct: 1 MSGGERILGVDPGSRITGYGIIEQDGPRLRFITCGVLRVARYGSLAARILRIHQGLGEVI 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
RP AVE+VFV + A LKLG AR + +L+ +P++E+ P +K+AV G G
Sbjct: 61 SLHRPHRMAVEEVFVAGNPKAALKLGHARGVILLAAMQHNLPLAEFTPLVVKQAVAGYGR 120
Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHAN 159
K+Q+ M++ L+ S +DAADALA+A+C A H +
Sbjct: 121 ASKEQVQRMVRSLLNLSASPSEDAADALAVAICGANHRS 159
>gi|94264073|ref|ZP_01287872.1| Crossover junction endodeoxyribonuclease RuvC [delta
proteobacterium MLMS-1]
gi|93455489|gb|EAT05679.1| Crossover junction endodeoxyribonuclease RuvC [delta
proteobacterium MLMS-1]
Length = 154
Score = 180 bits (457), Expect = 6e-44, Method: Composition-based stats.
Identities = 63/153 (41%), Positives = 99/153 (64%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+G+DPG R TG+GI++ G+ L FV+ G I + +++ RL ++ GL +VI +
Sbjct: 1 MRILGVDPGSRLTGYGIIEQRGNLLAFVACGVIRAEKAKTMPERLLLIHRGLDEVIACHQ 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P++AAVE +F + + LKLGQAR + IL+ +PV+EY P +K+AV G G K+
Sbjct: 61 PQQAAVEDIFTAVNPRSALKLGQARGVIILTLCRHGLPVAEYTPRMVKQAVAGYGQASKE 120
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYH 157
Q+ M++ L+ + +DAADALA+A+C A H
Sbjct: 121 QVQQMVRALLKLNANPSQDAADALAVAICRANH 153
>gi|119944487|ref|YP_942167.1| crossover junction endodeoxyribonuclease RuvC [Psychromonas
ingrahamii 37]
gi|166233289|sp|A1SSV3|RUVC_PSYIN RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|119863091|gb|ABM02568.1| crossover junction endodeoxyribonuclease RuvC [Psychromonas
ingrahamii 37]
Length = 173
Score = 180 bits (457), Expect = 6e-44, Method: Composition-based stats.
Identities = 62/155 (40%), Positives = 97/155 (62%), Gaps = 1/155 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G+V G +++SG I + +LA +L ++ G++++IK ++P
Sbjct: 3 IILGIDPGSRITGYGVVQQKGSKCIYIASGCIRT-KGDTLAPKLDMIFNGISEIIKQYQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
E +EQVF+ K+ + LKLGQAR AI++ A + V EY+ IK+AV G G K+Q
Sbjct: 62 TEFGIEQVFMAKNPDSALKLGQARGAAIVAATQADLYVCEYSARQIKQAVSGSGGATKEQ 121
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
+ M+ ++ S DAAD LA+A+CHA+ A +
Sbjct: 122 VQQMVMQILNLSGRPQADAADGLAVAICHAHTAQT 156
>gi|296535993|ref|ZP_06898137.1| crossover junction endoribonuclease subunit C [Roseomonas
cervicalis ATCC 49957]
gi|296263679|gb|EFH10160.1| crossover junction endoribonuclease subunit C [Roseomonas
cervicalis ATCC 49957]
Length = 168
Score = 180 bits (457), Expect = 6e-44, Method: Composition-based stats.
Identities = 75/160 (46%), Positives = 111/160 (69%)
Query: 4 SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R++G+DPGL+ TGWG+V+ +G L + G I + SLA RLCQ++ L ++ W
Sbjct: 1 MVRLLGLDPGLQHTGWGVVESSGSRLRHLGDGVISTTADLSLAERLCQIHRALNTLLDLW 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
+P+EAAVE +VNK+ A LKLGQAR + +L+PALA +PV+EY +K+AV+G GH DK
Sbjct: 61 KPDEAAVEHTYVNKNPGAALKLGQARGVVLLAPALAGLPVAEYQAMEVKRAVVGTGHADK 120
Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYY 163
Q+ M++ L+P + K DA+DALA+A+CHA+H N+
Sbjct: 121 VQVAEMVRRLLPGATLKRADASDALAVAICHAHHRNTRVA 160
>gi|311745860|ref|ZP_07719645.1| crossover junction endodeoxyribonuclease RuvC [Algoriphagus sp.
PR1]
gi|126576063|gb|EAZ80341.1| crossover junction endodeoxyribonuclease RuvC [Algoriphagus sp.
PR1]
Length = 191
Score = 180 bits (457), Expect = 6e-44, Method: Composition-based stats.
Identities = 49/160 (30%), Positives = 87/160 (54%), Gaps = 1/160 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG G+G++ G + G I + +L +++E ++ +I+ + P
Sbjct: 13 IILGIDPGTNVMGYGLIKTEGKKYELLQYGVIHLKKYGTHELKLKKIFERISGIIEEFLP 72
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+E F + + LKLG+A+ +A+ + IP++EY+P +K++V G G+ K+Q
Sbjct: 73 DSVALEAPFYGVNVQSMLKLGRAQGVAMAAALAREIPITEYSPKKVKQSVTGNGNASKEQ 132
Query: 126 IHMMLKMLMPESF-FKGKDAADALAIAVCHAYHANSGYYK 164
+ ML+ L K DA DALA+A+CH +H +
Sbjct: 133 VAAMLQTLFDLKELPKMLDATDALAVALCHHFHEGRVQTR 172
>gi|33594300|ref|NP_881944.1| Holliday junction resolvase [Bordetella pertussis Tohama I]
gi|44888432|sp|Q7VTU0|RUVC_BORPE RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|33564375|emb|CAE43680.1| crossover junction endodeoxyribonuclease [Bordetella pertussis
Tohama I]
gi|332383711|gb|AEE68558.1| Holliday junction resolvase [Bordetella pertussis CS]
Length = 182
Score = 180 bits (457), Expect = 7e-44, Method: Composition-based stats.
Identities = 68/152 (44%), Positives = 99/152 (65%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+R++GIDPGLRRTG+G++D G L +V+SGTIV +L RL + + L +V + R
Sbjct: 1 MRVLGIDPGLRRTGFGVIDAEGMRLRYVASGTIVVPPALALPERLKVILDNLREVARETR 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ AA+E VF+N + +TL LGQAR A+ + A + + V EY IKKAV+G G K+
Sbjct: 61 PDVAALEIVFLNTNPASTLLLGQARGAALCALADSALDVHEYTALQIKKAVMGTGRAAKE 120
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
Q+ MM++ L+ D+ADALA A+CHA+
Sbjct: 121 QVQMMVQRLLSLDGTPAPDSADALACAICHAH 152
>gi|126700423|ref|YP_001089320.1| Holliday junction resolvase [Clostridium difficile 630]
gi|122973685|sp|Q183P3|RUVC_CLOD6 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|115251860|emb|CAJ69695.1| Crossover junction endodeoxyribonuclease RuvC (Holliday junction
nuclease RuvC) (Holliday junction resolvase RuvC)
[Clostridium difficile]
Length = 169
Score = 180 bits (456), Expect = 7e-44, Method: Composition-based stats.
Identities = 50/154 (32%), Positives = 87/154 (56%), Gaps = 1/154 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ I+GIDPG+ G+GI++ + G + + +++ RL +Y+G+ ++KN+
Sbjct: 1 MIILGIDPGIAIVGYGIIEYKNSKFKAIDYGAVTTPAHMNISRRLELVYKGIDTIVKNYN 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
+E +E++F NK+ + + QAR + +L+ A PV EY P +K+ V+G G DK
Sbjct: 61 IDEVGMEELFFNKNVKTAITVAQARGVTMLACAHNGKPVYEYTPLQVKQGVVGYGRADKA 120
Query: 125 QIHMMLKMLMPESF-FKGKDAADALAIAVCHAYH 157
Q+ M+ + K D ADALA+A+CHA+
Sbjct: 121 QVQQMVTSFLSLKKVPKPDDVADALAVAICHAHS 154
>gi|220932070|ref|YP_002508978.1| crossover junction endodeoxyribonuclease RuvC [Halothermothrix
orenii H 168]
gi|254767476|sp|B8CXG4|RUVC_HALOH RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|219993380|gb|ACL69983.1| crossover junction endodeoxyribonuclease RuvC [Halothermothrix
orenii H 168]
Length = 165
Score = 180 bits (456), Expect = 8e-44, Method: Composition-based stats.
Identities = 50/154 (32%), Positives = 89/154 (57%), Gaps = 1/154 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ I+G+DPGL G+ +++ G+ + G+I + + RL ++ + ++I +
Sbjct: 1 MVILGVDPGLAIVGYALIEKQGNKYRVIDYGSINTPSKLESVDRLKIIHTDMVNIINKYN 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P++ AVE++F NK+ +++GQAR + +L+ + AR+ + EY P +K+AV G G K
Sbjct: 61 PDQMAVEKLFFNKNVKTAIEVGQARGVILLAGSQARLKIYEYTPLQVKQAVAGYGRAHKS 120
Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYH 157
Q+ M+K L+ K D ADALAI++CH
Sbjct: 121 QVQRMVKALLNLNEIPKPDDVADALAISICHGNS 154
>gi|117621378|ref|YP_855842.1| Holliday junction resolvase [Aeromonas hydrophila subsp. hydrophila
ATCC 7966]
gi|166231575|sp|A0KHU1|RUVC_AERHH RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|117562785|gb|ABK39733.1| crossover junction endodeoxyribonuclease RuvC [Aeromonas hydrophila
subsp. hydrophila ATCC 7966]
Length = 173
Score = 180 bits (456), Expect = 8e-44, Method: Composition-based stats.
Identities = 64/163 (39%), Positives = 104/163 (63%), Gaps = 2/163 (1%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ + ++ SG I + + + L RL Q+Y+G++++I ++P
Sbjct: 3 IILGIDPGSRITGYGVIRIVAGKAEYLGSGCIRTDLGE-LPSRLKQVYDGVSEIITQFKP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+E A+E+VF+ ++A + LKLGQAR AI++ A +PVSEY+ IK+AV+G G K+Q
Sbjct: 62 DEFAIERVFMARNADSALKLGQARGSAIVAAVNALLPVSEYSATQIKQAVVGTGGAAKEQ 121
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
+ M+ L+ S DAADAL +A+CH + K+A +
Sbjct: 122 VQHMVTHLLKLSATPQADAADALGVALCHFHTRQ-ILIKMAGR 163
>gi|227484941|ref|ZP_03915257.1| crossover junction endodeoxyribonuclease [Anaerococcus lactolyticus
ATCC 51172]
gi|227237096|gb|EEI87111.1| crossover junction endodeoxyribonuclease [Anaerococcus lactolyticus
ATCC 51172]
Length = 164
Score = 180 bits (456), Expect = 8e-44, Method: Composition-based stats.
Identities = 48/156 (30%), Positives = 88/156 (56%), Gaps = 1/156 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ ++GIDPG+ G+G+V+ + + + +G + + + RL LY+ L +IK ++
Sbjct: 1 MIVLGIDPGIAIMGYGVVEFKSNKVKVLENGVVTTSSKTRTPERLKILYDNLDKIIKEFK 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+E A+E++F N++ + +G AR + +L + + EY P IK+A+ G G DK+
Sbjct: 61 PDEFAIEELFFNQNVKTAITVGHARGVQVLCAQDNGLDIYEYTPLQIKQAITGYGRADKQ 120
Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHAN 159
Q+ + + L+ K DAADAL++A+CH
Sbjct: 121 QMQLTITTLLNLKEIPKPDDAADALSVALCHVLSQR 156
>gi|157962185|ref|YP_001502219.1| Holliday junction resolvase [Shewanella pealeana ATCC 700345]
gi|189046081|sp|A8H547|RUVC_SHEPA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|157847185|gb|ABV87684.1| crossover junction endodeoxyribonuclease RuvC [Shewanella pealeana
ATCC 700345]
Length = 173
Score = 180 bits (456), Expect = 8e-44, Method: Composition-based stats.
Identities = 65/163 (39%), Positives = 103/163 (63%), Gaps = 2/163 (1%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+G+DPG R TG+G++ G +V SG I + + L RL Q+++GL+++I+ ++P
Sbjct: 3 IILGVDPGSRITGYGVIKCVGRQQVYVGSGCIRTSSDE-LPLRLKQIFDGLSEIIRQYQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+E A+E+VF+ K+A + LKLGQAR AI++ A +PV+EY+ IK AV+G G K Q
Sbjct: 62 DEFAIERVFMAKNADSALKLGQARGAAIVAATAANLPVAEYSATQIKSAVVGTGRAQKTQ 121
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
+ M++ L+ DAADAL +AVCH + + S +A +
Sbjct: 122 VQHMIQQLLKLPSAPQADAADALGVAVCHYHTSQS-LVALAGR 163
>gi|260893479|ref|YP_003239576.1| crossover junction endodeoxyribonuclease RuvC [Ammonifex degensii
KC4]
gi|260865620|gb|ACX52726.1| crossover junction endodeoxyribonuclease RuvC [Ammonifex degensii
KC4]
Length = 160
Score = 180 bits (456), Expect = 8e-44, Method: Composition-based stats.
Identities = 49/151 (32%), Positives = 85/151 (56%), Gaps = 1/151 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ ++G+DPG R G+G+V G +L ++ G + + Q L RL LY L ++++ ++
Sbjct: 1 MVVMGVDPGAERLGYGLVREDGQHLKAIAYGCLHTPADQPLPLRLKSLYRALKELLQKYQ 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P AVE++F ++ + +G+ + +L+ A + PV Y P +K+AV G G K+
Sbjct: 61 PNALAVEELFWGQNVRTAMMVGKVAGVVLLAAAESNCPVFSYPPQVVKQAVTGYGRATKR 120
Query: 125 QIHMMLKMLMPESFFK-GKDAADALAIAVCH 154
Q+ M+K L+ D ADALA+A+CH
Sbjct: 121 QVQYMVKELLGLPAPPSPDDTADALALAICH 151
>gi|238022887|ref|ZP_04603313.1| hypothetical protein GCWU000324_02808 [Kingella oralis ATCC 51147]
gi|237865695|gb|EEP66833.1| hypothetical protein GCWU000324_02808 [Kingella oralis ATCC 51147]
Length = 178
Score = 180 bits (456), Expect = 8e-44, Method: Composition-based stats.
Identities = 69/167 (41%), Positives = 97/167 (58%)
Query: 2 RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
+ RI+GIDPG R TG+GI+DV G +V SG I + LA R+ + E +++++
Sbjct: 4 SRPTRILGIDPGSRTTGFGIIDVVGREQIYVVSGCIKTIKNDELAGRIGIIVENISELVA 63
Query: 62 NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
+RP AAVE+VFVN + ATL LGQAR AI + L +PV EY +K+AV+G G
Sbjct: 64 TYRPTVAAVERVFVNVNPAATLMLGQARGAAIAALVLRGLPVYEYTALQVKQAVVGQGKA 123
Query: 122 DKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
K+Q+ M+ ++ S DAAD LAIA+ HA K+ S
Sbjct: 124 AKEQVQHMVVQMLKLSGTPQADAADGLAIALTHALRNQGLAAKLGSS 170
>gi|261364067|ref|ZP_05976950.1| crossover junction endodeoxyribonuclease RuvC [Neisseria mucosa
ATCC 25996]
gi|288568109|gb|EFC89669.1| crossover junction endodeoxyribonuclease RuvC [Neisseria mucosa
ATCC 25996]
Length = 182
Score = 180 bits (456), Expect = 8e-44, Method: Composition-based stats.
Identities = 61/164 (37%), Positives = 101/164 (61%)
Query: 2 RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
++ RI+GIDPG R TG+G++DV G +++SG I + L+ R+ + + ++++
Sbjct: 5 SQTTRILGIDPGSRVTGFGVIDVRGREHFYIASGCIKTPPDAPLSERIAVIVRHIDEIVR 64
Query: 62 NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
+RP++AAVEQVFVN + +TL LGQAR A+ + + +PVSEY +K+AV+G G
Sbjct: 65 TYRPQQAAVEQVFVNVNPASTLMLGQARGAALAALVMHGLPVSEYTALQVKQAVVGKGKA 124
Query: 122 DKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
K+Q+ M+ ++ S DAAD LA+A+ HA + ++
Sbjct: 125 AKEQVQHMVVQMLSLSGTPQSDAADGLAVALTHALRNHGLAAQL 168
>gi|90408543|ref|ZP_01216700.1| crossover junction endodeoxyribonuclease RuvC [Psychromonas sp.
CNPT3]
gi|90310362|gb|EAS38490.1| crossover junction endodeoxyribonuclease RuvC [Psychromonas sp.
CNPT3]
Length = 173
Score = 179 bits (455), Expect = 9e-44, Method: Composition-based stats.
Identities = 65/163 (39%), Positives = 102/163 (62%), Gaps = 2/163 (1%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+GI++ G +++SG I + +LA +L ++ G++++IK ++P
Sbjct: 3 IILGIDPGSRITGYGIIEQKGAKCIYIASGCIRT-KGDTLAPKLDMIFSGISEIIKQYQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
E A+EQVF+ K+ + LKLGQAR AI++ A + + EY+ IK+AV+G G K Q
Sbjct: 62 TEFAIEQVFMGKNPDSALKLGQARGAAIVAATQADLYICEYSARQIKQAVVGTGAATKDQ 121
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
+ M+ L+ S DAAD LA+A+CHA+ A S +A +
Sbjct: 122 VQQMVVRLLQLSGTPQADAADGLAVAICHAHTAQS-LVAMAGK 163
>gi|157363107|ref|YP_001469874.1| crossover junction endodeoxyribonuclease RuvC [Thermotoga lettingae
TMO]
gi|167012683|sp|A8F3S6|RUVC_THELT RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|157313711|gb|ABV32810.1| crossover junction endodeoxyribonuclease RuvC [Thermotoga lettingae
TMO]
Length = 162
Score = 179 bits (455), Expect = 1e-43, Method: Composition-based stats.
Identities = 65/152 (42%), Positives = 96/152 (63%), Gaps = 1/152 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ I G+DPG G+G++ V+G++ VS GTI + +Q++A RL LYE L++VI N++
Sbjct: 1 MIIFGVDPGFGILGYGVLSVSGNSFQHVSHGTIQTEKQQNIALRLKVLYEELSNVIDNFK 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P E A+E++F +++ + +G+AR I +L A IPV EY P+ IKKAV G G KK
Sbjct: 61 PSEIAMEKLFFSRNITTAISVGEARGIVLLLAAQRNIPVFEYTPHEIKKAVTGSGKASKK 120
Query: 125 QIHMMLKMLMPESF-FKGKDAADALAIAVCHA 155
+ M+K+L+ K DAAD LAIA CH
Sbjct: 121 DVQQMIKILLNLKELPKPDDAADGLAIAWCHC 152
>gi|23015562|ref|ZP_00055334.1| COG0817: Holliday junction resolvasome, endonuclease subunit
[Magnetospirillum magnetotacticum MS-1]
Length = 166
Score = 179 bits (455), Expect = 1e-43, Method: Composition-based stats.
Identities = 74/156 (47%), Positives = 105/156 (67%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+G+DPGLR TGWGI+D + L V+ G I +L+ RL QL++ + VI +
Sbjct: 1 MRILGLDPGLRNTGWGIIDAVDNRLRHVADGVIRPDASAALSERLVQLHDAIMAVIAEYG 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+EAAVE+ FVN + +TLKLGQAR + +L PA A +PV EYA +K++V+G G K+
Sbjct: 61 PDEAAVEETFVNMNPASTLKLGQARGVVMLVPAKAGLPVGEYAATLVKQSVVGTGRAAKE 120
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
Q+ MM+K L+P DAADALA+A+CHA+H +
Sbjct: 121 QVGMMVKTLLPGCLAATPDAADALAVAICHAHHRGT 156
>gi|291557650|emb|CBL34767.1| crossover junction endodeoxyribonuclease RuvC [Eubacterium siraeum
V10Sc8a]
Length = 167
Score = 179 bits (455), Expect = 1e-43, Method: Composition-based stats.
Identities = 54/166 (32%), Positives = 88/166 (53%), Gaps = 1/166 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RIIGIDPG G+G+VD G I + RLC++YE ++ +W+
Sbjct: 1 MRIIGIDPGYAIVGFGVVDYIDGKFSVKDFGAITTDKDTPFPKRLCEIYEDYCQILDSWK 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ ++E+++ + + + QAR I I++ A I ++EY P +K+AV+G G KK
Sbjct: 61 PDALSIERLYFTNNQKTGIDVAQARGIIIMAAAQRGIEINEYTPLQVKQAVVGYGQAVKK 120
Query: 125 QIHMMLKMLMPES-FFKGKDAADALAIAVCHAYHANSGYYKIASQD 169
Q+ M K ++ K D ADALA+ +CHA + S I + +
Sbjct: 121 QVQEMTKNILKLPFVPKPDDTADALAMTICHAQTSGSLLRNIKASN 166
>gi|260779159|ref|ZP_05888051.1| crossover junction endodeoxyribonuclease RuvC [Vibrio
coralliilyticus ATCC BAA-450]
gi|260605323|gb|EEX31618.1| crossover junction endodeoxyribonuclease RuvC [Vibrio
coralliilyticus ATCC BAA-450]
Length = 173
Score = 179 bits (454), Expect = 1e-43, Method: Composition-based stats.
Identities = 66/163 (40%), Positives = 104/163 (63%), Gaps = 2/163 (1%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G +L ++ SG I + ++ L RL Q+Y G+T++I ++P
Sbjct: 3 IILGIDPGSRITGYGVIRQTGRHLHYLGSGCIRTSEKE-LPGRLKQIYAGVTEIITQFQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQVF+ ++A + LKLGQAR AI++ A +PV EYA IK+AV+G G DK+Q
Sbjct: 62 DVFAIEQVFMARNADSALKLGQARGSAIVAAVNADLPVYEYAARLIKQAVVGTGGADKEQ 121
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
+ M++ ++ DAADAL +A+CHA + +A +
Sbjct: 122 VQHMVQSMLKLPAKPQADAADALGVAICHANTNKT-LVALAGK 163
>gi|298369672|ref|ZP_06980989.1| crossover junction endodeoxyribonuclease RuvC [Neisseria sp. oral
taxon 014 str. F0314]
gi|298282229|gb|EFI23717.1| crossover junction endodeoxyribonuclease RuvC [Neisseria sp. oral
taxon 014 str. F0314]
Length = 182
Score = 179 bits (454), Expect = 1e-43, Method: Composition-based stats.
Identities = 62/160 (38%), Positives = 99/160 (61%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
RI+GIDPG R TG+G++DV G +V+SG I + L+ R+ + + ++++ +RP
Sbjct: 9 RILGIDPGSRVTGFGVIDVCGREHFYVASGCIKTPPDAPLSERIAVIVRHIGEIVRLYRP 68
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
++AAVEQVFVN + +TL LGQAR A+ + + +PVSEY +K+AV+G G K+Q
Sbjct: 69 QQAAVEQVFVNVNPASTLMLGQARGAALAALVMHELPVSEYTALQVKQAVVGKGKAAKEQ 128
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
+ M+ ++ S DAAD LA+A+ HA + ++
Sbjct: 129 VQHMVVQMLSLSGTPQSDAADGLAVALTHALRNHGLAAQL 168
>gi|261211910|ref|ZP_05926197.1| crossover junction endodeoxyribonuclease RuvC [Vibrio sp. RC341]
gi|260839260|gb|EEX65892.1| crossover junction endodeoxyribonuclease RuvC [Vibrio sp. RC341]
Length = 173
Score = 179 bits (454), Expect = 1e-43, Method: Composition-based stats.
Identities = 67/162 (41%), Positives = 102/162 (62%), Gaps = 2/162 (1%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
I+GIDPG R TG+G++ G +L ++ SG I + Q L RL Q+Y G++++I ++P+
Sbjct: 4 ILGIDPGSRVTGYGVIRQQGRHLIYLGSGCIRTS-EQELPLRLKQIYAGVSEIITQFQPD 62
Query: 67 EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
A+EQVF+ K+A + LKLGQAR AI++ A +PV EYA +K+AV+G G DK Q+
Sbjct: 63 VFAIEQVFMAKNADSALKLGQARGSAIVAAVNAELPVYEYAARLVKQAVVGTGAADKSQV 122
Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
M++ ++ DAADAL +A+CHA + +A Q
Sbjct: 123 QHMVQQMLKLPGKPQSDAADALGVAICHANTNKT-LIALAGQ 163
>gi|254468664|ref|ZP_05082070.1| crossover junction endodeoxyribonuclease RuvC [beta proteobacterium
KB13]
gi|207087474|gb|EDZ64757.1| crossover junction endodeoxyribonuclease RuvC [beta proteobacterium
KB13]
Length = 175
Score = 179 bits (454), Expect = 1e-43, Method: Composition-based stats.
Identities = 57/174 (32%), Positives = 97/174 (55%), Gaps = 7/174 (4%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCV-RQSLAFRLCQLYEGLTDV 59
M + R+IGIDPGLR TG+GIVD +++SG I + + RL +++ ++++
Sbjct: 1 MTST-RVIGIDPGLRITGYGIVDCENKKTTYITSGVIKTTSEKLPYPERLKIIFDEVSEI 59
Query: 60 IKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVG 119
+ +P + +E+ FVN +A ++L LGQAR +A+ + ++ + EY IKK+V+G G
Sbjct: 60 VSKHQPNQMCIEKTFVNMNANSSLALGQARGVAMAAGIQHQLQIYEYTALQIKKSVVGNG 119
Query: 120 HGDKKQIHMMLKMLMPESFFKGKDAADALAIAVCH-----AYHANSGYYKIASQ 168
H +K Q+ M++ L+ G D++DALA +CH NS +
Sbjct: 120 HAEKIQVQSMVQKLLNLPEVLGPDSSDALACVLCHNQVMQINQDNSPINFKGGR 173
>gi|89902186|ref|YP_524657.1| Holliday junction resolvase [Rhodoferax ferrireducens T118]
gi|123278409|sp|Q21SX7|RUVC_RHOFD RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|89346923|gb|ABD71126.1| crossover junction endodeoxyribonuclease RuvC [Rhodoferax
ferrireducens T118]
Length = 182
Score = 179 bits (454), Expect = 1e-43, Method: Composition-based stats.
Identities = 72/167 (43%), Positives = 107/167 (64%), Gaps = 3/167 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCV--RQSLAFRLCQLYEGLTDVIKN 62
+RI+GIDPGLR TG+G++DVAG +L +V+SGTI + + L RL L++G+ +V+
Sbjct: 1 MRILGIDPGLRTTGFGVIDVAGADLTYVASGTISTLHLDKGQLPARLKVLFDGIREVVAR 60
Query: 63 WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
++PE A+VE VFVN + +TL LGQAR I + +PV+EY +K+AV+G G D
Sbjct: 61 YQPECASVEIVFVNVNPQSTLLLGQARGACITALVSGDLPVAEYTALQMKQAVVGYGRAD 120
Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQD 169
K Q+ M++ L+ G DAADAL +A+ HA+ A ++A D
Sbjct: 121 KSQVQEMVRRLLALPGLPGPDAADALGLAITHAHAAK-ALARLAQAD 166
>gi|306821004|ref|ZP_07454623.1| crossover junction endoribonuclease subunit C [Eubacterium yurii
subsp. margaretiae ATCC 43715]
gi|304550945|gb|EFM38917.1| crossover junction endoribonuclease subunit C [Eubacterium yurii
subsp. margaretiae ATCC 43715]
Length = 163
Score = 179 bits (454), Expect = 1e-43, Method: Composition-based stats.
Identities = 50/163 (30%), Positives = 94/163 (57%), Gaps = 1/163 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ ++G+DPG+ G+GI++ ++ +S G I + + L+ R+ +++ + ++I+ +
Sbjct: 1 MIVLGVDPGIAIVGYGIIEYKNNSFKVLSYGAITTPAKTKLSSRIKIIHDDINELIRTYD 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
E A+E++F NK+ + + AR + ++S IPV EY P +K+ V+G G +KK
Sbjct: 61 IEALAIEELFFNKNVKTAIDVAHARGVIMVSAVNNNIPVYEYTPLQVKQGVVGYGRAEKK 120
Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHANSGYYKIA 166
QI M+K+++ S K D AD LA+A+CH + N +A
Sbjct: 121 QIQEMVKIILNLNSIPKPDDVADGLALAICHCHSINHSDLFLA 163
>gi|262404191|ref|ZP_06080746.1| crossover junction endodeoxyribonuclease RuvC [Vibrio sp. RC586]
gi|262349223|gb|EEY98361.1| crossover junction endodeoxyribonuclease RuvC [Vibrio sp. RC586]
Length = 173
Score = 179 bits (454), Expect = 1e-43, Method: Composition-based stats.
Identities = 68/162 (41%), Positives = 102/162 (62%), Gaps = 2/162 (1%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
I+GIDPG R TG+G++ G +L ++ SG I + Q L RL Q+Y G++++I ++P+
Sbjct: 4 ILGIDPGSRVTGYGVIRQQGRHLIYLGSGCIRTS-EQDLPLRLKQIYAGVSEIITQFQPD 62
Query: 67 EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
A+EQVF+ K+A + LKLGQAR AI++ A +PV EYA IK+AV+G G DK Q+
Sbjct: 63 AFAIEQVFMAKNADSALKLGQARGSAIVAAVNAELPVYEYAARLIKQAVVGTGAADKSQV 122
Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
M++ ++ DAADAL +A+CHA + +A Q
Sbjct: 123 QHMVQQMLKLPGKPQADAADALGVAICHANTNKT-LIALAGQ 163
>gi|163855210|ref|YP_001629508.1| Holliday junction resolvase [Bordetella petrii DSM 12804]
gi|226698746|sp|A9I8F5|RUVC_BORPD RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|163258938|emb|CAP41237.1| crossover junction endodeoxyribonuclease [Bordetella petrii]
Length = 182
Score = 179 bits (454), Expect = 1e-43, Method: Composition-based stats.
Identities = 68/163 (41%), Positives = 102/163 (62%), Gaps = 1/163 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+R++GIDPGLRRTG+G++D G L +V+SGTIV +L RL + + L V ++ R
Sbjct: 1 MRVLGIDPGLRRTGFGVIDAEGMRLRYVASGTIVVPPALALPERLKVILDNLRQVARDTR 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ AA+E VF+N + +TL LGQAR A+ + A +++ V EY IKKAV+G G K+
Sbjct: 61 PDVAALEIVFLNTNPASTLLLGQARGAALCALADSQLAVHEYTALQIKKAVVGTGRAAKE 120
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
Q+ MM++ L+ D+ADALA A+CHA+ ++
Sbjct: 121 QVQMMVQRLLSLDGTPAPDSADALACAICHAH-VGPLQARLGG 162
>gi|167837834|ref|ZP_02464717.1| Holliday junction resolvase [Burkholderia thailandensis MSMB43]
Length = 180
Score = 179 bits (454), Expect = 1e-43, Method: Composition-based stats.
Identities = 69/152 (45%), Positives = 102/152 (67%), Gaps = 1/152 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPGLR TG+G++DV+G L +V+SG I + L RL +Y+G++ +I+
Sbjct: 1 MRILGIDPGLRVTGFGVIDVSGHRLAYVASGVIKTPT-ADLPTRLGTIYDGISTLIREHA 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P++AA+E+VFVN + +TL LGQAR AI R+PV+EY +K+AV+G G K+
Sbjct: 60 PDQAAIEKVFVNVNPQSTLLLGQARGAAICGLVSGRLPVAEYTALQLKQAVVGYGRATKE 119
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
Q+ M+ L+ S G DAADAL +A+CHA+
Sbjct: 120 QMQEMVARLLSLSGLPGTDAADALGMAICHAH 151
>gi|255262910|ref|ZP_05342252.1| crossover junction endodeoxyribonuclease RuvC [Thalassiobium sp.
R2A62]
gi|255105245|gb|EET47919.1| crossover junction endodeoxyribonuclease RuvC [Thalassiobium sp.
R2A62]
Length = 200
Score = 179 bits (454), Expect = 1e-43, Method: Composition-based stats.
Identities = 85/159 (53%), Positives = 110/159 (69%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+R++GIDPGLR GWG++DV+G L V++G S LA RL L+ L +VI+ +
Sbjct: 32 MRVLGIDPGLRNMGWGVIDVSGTRLSHVANGICKSSTGDILAERLLLLHGQLAEVIEQYA 91
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
PE AAVEQ FVNKD TLKLGQAR IA+L A A + V EYAPN +KK V+GVGH DK+
Sbjct: 92 PETAAVEQTFVNKDGAGTLKLGQARGIAMLVAAQAGLSVGEYAPNAVKKTVVGVGHADKR 151
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYY 163
Q+ M++M +P G D+ADALAIA+CHA+HA S +
Sbjct: 152 QVDHMVRMQLPGVQIVGPDSADALAIAICHAHHAQSQNH 190
>gi|330815561|ref|YP_004359266.1| Crossover junction endodeoxyribonuclease RuvC [Burkholderia
gladioli BSR3]
gi|327367954|gb|AEA59310.1| Crossover junction endodeoxyribonuclease RuvC [Burkholderia
gladioli BSR3]
Length = 180
Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats.
Identities = 68/163 (41%), Positives = 105/163 (64%), Gaps = 2/163 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RIIGIDPGLR TG+G++DV G L +V+SG I + + L+ RL +++G++ +++ +R
Sbjct: 1 MRIIGIDPGLRVTGFGVIDVQGSRLAYVTSGVIRTPSAE-LSVRLGTIFDGVSTLVREYR 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+++A+E+VFVN + +TL LGQAR AI + V+EY P +K+AV+G G K+
Sbjct: 60 PDQSAIEKVFVNVNPQSTLLLGQARGAAICGLVAGGMAVAEYTPTQLKQAVVGYGRATKE 119
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
Q+ M+ L+ S G DAADAL +A+CHA A +
Sbjct: 120 QMQQMVVRLLGLSGLPGTDAADALGMAICHAN-AGDALATLGG 161
>gi|53720505|ref|YP_109491.1| Holliday junction resolvase [Burkholderia pseudomallei K96243]
gi|53726198|ref|YP_103913.1| Holliday junction resolvase [Burkholderia mallei ATCC 23344]
gi|67642317|ref|ZP_00441075.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia mallei
GB8 horse 4]
gi|126451211|ref|YP_001082060.1| Holliday junction resolvase [Burkholderia mallei NCTC 10247]
gi|126453395|ref|YP_001067636.1| Holliday junction resolvase [Burkholderia pseudomallei 1106a]
gi|134280428|ref|ZP_01767139.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
pseudomallei 305]
gi|162210042|ref|YP_334776.2| Holliday junction resolvase [Burkholderia pseudomallei 1710b]
gi|167000506|ref|ZP_02266318.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia mallei
PRL-20]
gi|167721173|ref|ZP_02404409.1| Holliday junction resolvase [Burkholderia pseudomallei DM98]
gi|167740149|ref|ZP_02412923.1| Holliday junction resolvase [Burkholderia pseudomallei 14]
gi|167817362|ref|ZP_02449042.1| Holliday junction resolvase [Burkholderia pseudomallei 91]
gi|167825770|ref|ZP_02457241.1| Holliday junction resolvase [Burkholderia pseudomallei 9]
gi|167847252|ref|ZP_02472760.1| Holliday junction resolvase [Burkholderia pseudomallei B7210]
gi|167895839|ref|ZP_02483241.1| Holliday junction resolvase [Burkholderia pseudomallei 7894]
gi|167904230|ref|ZP_02491435.1| Holliday junction resolvase [Burkholderia pseudomallei NCTC 13177]
gi|167912489|ref|ZP_02499580.1| Holliday junction resolvase [Burkholderia pseudomallei 112]
gi|167920441|ref|ZP_02507532.1| Holliday junction resolvase [Burkholderia pseudomallei BCC215]
gi|217420409|ref|ZP_03451914.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
pseudomallei 576]
gi|226198409|ref|ZP_03793978.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
pseudomallei Pakistan 9]
gi|237813763|ref|YP_002898214.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
pseudomallei MSHR346]
gi|242316570|ref|ZP_04815586.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
pseudomallei 1106b]
gi|254180689|ref|ZP_04887287.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
pseudomallei 1655]
gi|254194911|ref|ZP_04901341.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
pseudomallei S13]
gi|254202625|ref|ZP_04908988.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia mallei
FMH]
gi|254207964|ref|ZP_04914314.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia mallei
JHU]
gi|254260095|ref|ZP_04951149.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
pseudomallei 1710a]
gi|254299225|ref|ZP_04966675.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
pseudomallei 406e]
gi|254355896|ref|ZP_04972174.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia mallei
2002721280]
gi|81604342|sp|Q62HA7|RUVC_BURMA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|81607715|sp|Q63QX7|RUVC_BURPS RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|91771932|sp|Q3JNS7|RUVC_BURP1 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|166231586|sp|A3MP74|RUVC_BURM7 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|166231587|sp|A3NZ65|RUVC_BURP0 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|52210919|emb|CAH36907.1| crossover junction endodeoxyribonuclease [Burkholderia pseudomallei
K96243]
gi|52429621|gb|AAU50214.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia mallei
ATCC 23344]
gi|126227037|gb|ABN90577.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
pseudomallei 1106a]
gi|126244081|gb|ABO07174.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia mallei
NCTC 10247]
gi|134248435|gb|EBA48518.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
pseudomallei 305]
gi|147746872|gb|EDK53949.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia mallei
FMH]
gi|147751858|gb|EDK58925.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia mallei
JHU]
gi|148024871|gb|EDK83049.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia mallei
2002721280]
gi|157808953|gb|EDO86123.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
pseudomallei 406e]
gi|169651660|gb|EDS84353.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
pseudomallei S13]
gi|184211228|gb|EDU08271.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
pseudomallei 1655]
gi|217395821|gb|EEC35838.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
pseudomallei 576]
gi|225929592|gb|EEH25610.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
pseudomallei Pakistan 9]
gi|237504363|gb|ACQ96681.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
pseudomallei MSHR346]
gi|238523445|gb|EEP86883.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia mallei
GB8 horse 4]
gi|242139809|gb|EES26211.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
pseudomallei 1106b]
gi|243063560|gb|EES45746.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia mallei
PRL-20]
gi|254218784|gb|EET08168.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
pseudomallei 1710a]
Length = 180
Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats.
Identities = 69/156 (44%), Positives = 103/156 (66%), Gaps = 1/156 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPGLR TG+G++DV+G L +V+SG I + L RL +Y+G++ +I+
Sbjct: 1 MRILGIDPGLRVTGFGVIDVSGHQLAYVASGVIKTPT-ADLPTRLGTIYDGVSTLIREHT 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P++AA+E+VFVN + +TL LGQAR AI +PV+EY +K+AV+G G K+
Sbjct: 60 PDQAAIEKVFVNVNPQSTLLLGQARGAAICGLVSGGLPVAEYTALQLKQAVVGYGRATKE 119
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
Q+ M+ L+ S G DAADAL +A+CHA+ N+
Sbjct: 120 QMQEMVARLLSLSGRPGTDAADALGMAICHAHGGNT 155
>gi|261252499|ref|ZP_05945072.1| crossover junction endodeoxyribonuclease RuvC [Vibrio orientalis
CIP 102891]
gi|260935890|gb|EEX91879.1| crossover junction endodeoxyribonuclease RuvC [Vibrio orientalis
CIP 102891]
Length = 173
Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats.
Identities = 66/163 (40%), Positives = 104/163 (63%), Gaps = 2/163 (1%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G +L ++ SG I + ++ L RL Q+Y G++++I ++P
Sbjct: 3 IILGIDPGSRITGYGVIRQTGRHLQYLGSGCIRTSEKE-LPGRLKQIYAGVSEIITQFQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQVF+ ++A + LKLGQAR AI++ A +PVSEYA IK+AV G G DK+Q
Sbjct: 62 DVFAIEQVFMARNADSALKLGQARGSAIVAAVNADLPVSEYAARLIKQAVTGTGGADKEQ 121
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
+ M++ ++ DAADAL +A+CHA + +A +
Sbjct: 122 VQHMVQQMLKLPARPQADAADALGVAICHANTNKT-LVALAGK 163
>gi|145590057|ref|YP_001156654.1| crossover junction endodeoxyribonuclease RuvC [Polynucleobacter
necessarius subsp. asymbioticus QLW-P1DMWA-1]
gi|189046072|sp|A4T026|RUVC_POLSQ RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|145048463|gb|ABP35090.1| crossover junction endodeoxyribonuclease RuvC [Polynucleobacter
necessarius subsp. asymbioticus QLW-P1DMWA-1]
Length = 172
Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats.
Identities = 70/156 (44%), Positives = 105/156 (67%), Gaps = 1/156 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVS-CVRQSLAFRLCQLYEGLTDVIKNW 63
+R IGIDPGLR TG+G++DV G L +V+SGTI S + L RL LY G+ +V++ +
Sbjct: 1 MRWIGIDPGLRITGFGVIDVDGQKLTYVASGTIESGDPAKGLPERLGALYAGVKEVLETY 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
RPE+AA+E+VF+N + +TL LGQAR I + ++PV+EY+ +K+A++G G K
Sbjct: 61 RPEQAAIEEVFLNVNPRSTLMLGQARGAVIAALVSEKLPVAEYSALRVKQAIVGTGRAAK 120
Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHAN 159
Q+ M+K L+ S G DA+DAL +A+C A+H+
Sbjct: 121 PQVQEMVKRLLRLSRAPGTDASDALGVAICAAHHSQ 156
>gi|313677321|ref|YP_004055317.1| crossover junction endodeoxyribonuclease ruvc [Marivirga tractuosa
DSM 4126]
gi|312944019|gb|ADR23209.1| crossover junction endodeoxyribonuclease RuvC [Marivirga tractuosa
DSM 4126]
Length = 182
Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats.
Identities = 53/160 (33%), Positives = 94/160 (58%), Gaps = 1/160 (0%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M K I+G+DPG G+G++ + G+ + + G I + +L ++++ +T +I
Sbjct: 1 MPKDKIILGLDPGTSVMGYGVIQITGNKMSMLQYGVIHLSKYANHEIKLRKIFDRVTSLI 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
+++ P+E A+E F K+ + LKLG+A+ +A+ + +P+SEYAP +K++V G G+
Sbjct: 61 EDYAPDEVALEAPFYGKNIQSMLKLGRAQGVAMAAALRLDLPISEYAPKKVKQSVTGNGN 120
Query: 121 GDKKQIHMMLKMLMP-ESFFKGKDAADALAIAVCHAYHAN 159
K+Q+ MLK L+ + K DA DAL +AVCH +
Sbjct: 121 ASKEQVAEMLKTLLGIKEIPKLLDATDALGVAVCHHFQGG 160
>gi|255067254|ref|ZP_05319109.1| crossover junction endodeoxyribonuclease RuvC [Neisseria sicca ATCC
29256]
gi|255048405|gb|EET43869.1| crossover junction endodeoxyribonuclease RuvC [Neisseria sicca ATCC
29256]
Length = 180
Score = 178 bits (452), Expect = 2e-43, Method: Composition-based stats.
Identities = 67/165 (40%), Positives = 100/165 (60%)
Query: 2 RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
+KS+RI+GIDPG R TG+GI+DV G +V+SG I + LA R+ + + ++++
Sbjct: 4 QKSVRILGIDPGSRVTGFGIIDVCGREHFYVASGCIKTPPNAPLAERIAVIARHIREIVQ 63
Query: 62 NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
+RP +AAVEQVFVN + ATL LGQAR A+ + +PV EY +K+AV+G G
Sbjct: 64 QYRPHQAAVEQVFVNVNPAATLMLGQARGAALAVLVMEGLPVFEYTALQVKQAVVGKGKA 123
Query: 122 DKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
K+Q+ M+ ++ S DAAD LAIA+ HA + ++
Sbjct: 124 AKEQVQHMVVQMLSLSGTPQSDAADGLAIALTHALRNHGLAAQLG 168
>gi|258543670|ref|YP_003189103.1| Holliday junction resolvase [Acetobacter pasteurianus IFO 3283-01]
gi|256634748|dbj|BAI00724.1| Holliday junction resolvase RuvC [Acetobacter pasteurianus IFO
3283-01]
gi|256637804|dbj|BAI03773.1| Holliday junction resolvase RuvC [Acetobacter pasteurianus IFO
3283-03]
gi|256640858|dbj|BAI06820.1| Holliday junction resolvase RuvC [Acetobacter pasteurianus IFO
3283-07]
gi|256643913|dbj|BAI09868.1| Holliday junction resolvase RuvC [Acetobacter pasteurianus IFO
3283-22]
gi|256646968|dbj|BAI12916.1| Holliday junction resolvase RuvC [Acetobacter pasteurianus IFO
3283-26]
gi|256650021|dbj|BAI15962.1| Holliday junction resolvase RuvC [Acetobacter pasteurianus IFO
3283-32]
gi|256653011|dbj|BAI18945.1| Holliday junction resolvase RuvC [Acetobacter pasteurianus IFO
3283-01-42C]
gi|256656065|dbj|BAI21992.1| Holliday junction resolvase RuvC [Acetobacter pasteurianus IFO
3283-12]
Length = 168
Score = 178 bits (452), Expect = 2e-43, Method: Composition-based stats.
Identities = 75/164 (45%), Positives = 111/164 (67%)
Query: 4 SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R++GIDPGLR TGWG++DV G+ L V +G I + S+ RL L++ L +I
Sbjct: 1 MVRLLGIDPGLRFTGWGVIDVEGNRLRHVENGVIATNSADSVPDRLKVLHDNLLMLIDRL 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
P+E+AVE+ +VN++ ATLKLG AR +A+L PALA + V+EY ++KK+V+G G DK
Sbjct: 61 APQESAVEETYVNRNGSATLKLGYARGVALLVPALAGVSVAEYGALSVKKSVVGTGSADK 120
Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
KQ+ MM++ L+P + DA+DALA+A+CHA+H S + A
Sbjct: 121 KQVEMMVRRLLPGAEIIRADASDALAVAICHAHHRASARHIAAG 164
>gi|126439331|ref|YP_001060375.1| Holliday junction resolvase [Burkholderia pseudomallei 668]
gi|166231588|sp|A3NDF4|RUVC_BURP6 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|126218824|gb|ABN82330.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
pseudomallei 668]
Length = 180
Score = 178 bits (452), Expect = 2e-43, Method: Composition-based stats.
Identities = 69/156 (44%), Positives = 103/156 (66%), Gaps = 1/156 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPGLR TG+G++DV+G L +V+SG I + L RL +Y+G++ +I+
Sbjct: 1 MRILGIDPGLRVTGFGVIDVSGHQLAYVASGVIKTPT-ADLPTRLGTIYDGVSTLIREHT 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P++AA+E+VFVN + +TL LGQAR AI +PV+EY +K+AV+G G K+
Sbjct: 60 PDQAAIEKVFVNVNPQSTLLLGQARGAAICGLVSGGLPVAEYTALQLKQAVVGYGRATKE 119
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
Q+ M+ L+ S G DAADAL +A+CHA+ N+
Sbjct: 120 QMQEMVAQLLSLSGRPGTDAADALGMAICHAHGGNT 155
>gi|163802052|ref|ZP_02195948.1| Holliday junction resolvase [Vibrio sp. AND4]
gi|159174193|gb|EDP59001.1| Holliday junction resolvase [Vibrio sp. AND4]
Length = 173
Score = 178 bits (452), Expect = 2e-43, Method: Composition-based stats.
Identities = 67/163 (41%), Positives = 102/163 (62%), Gaps = 2/163 (1%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G +L ++ SG I + ++ L RL Q+Y G+T++I ++P
Sbjct: 3 IILGIDPGSRITGYGVIRQQGRHLQYLGSGCIRTSEKE-LPGRLKQIYAGVTEIITQFQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQVF+ K+A + LKLGQAR AI++ A +PV EYA IK+AV G G DK Q
Sbjct: 62 DVFAIEQVFMAKNADSALKLGQARGSAIVAAVNADLPVYEYAARLIKQAVTGTGGADKVQ 121
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
+ M++ ++ DAADAL +A+CHA + +A +
Sbjct: 122 VQHMVQHMLKLPAKPQADAADALGVAICHANTNKT-LVALAGK 163
>gi|282164970|ref|YP_003357355.1| crossover junction endodeoxyribonuclease RuvC [Methanocella
paludicola SANAE]
gi|282157284|dbj|BAI62372.1| crossover junction endodeoxyribonuclease RuvC [Methanocella
paludicola SANAE]
Length = 166
Score = 178 bits (452), Expect = 2e-43, Method: Composition-based stats.
Identities = 61/154 (39%), Positives = 89/154 (57%), Gaps = 1/154 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPG+ TG+GIV+ G + G I + + RL LY+ + ++++ +R
Sbjct: 1 MRILGIDPGIALTGFGIVEKEGVRIKAGRYGHISTESGTPVPDRLKILYDDMVNIVQEYR 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
PE VE++F NK+A + QAR + ILS + V EY P +K+AVIG G K+
Sbjct: 61 PEVMVVEELFFNKNAKTAIIAAQARGVIILSAVNNGVKVEEYTPLQVKQAVIGYGRASKQ 120
Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYH 157
Q+ M+K L+ K D ADALAIA+CHA
Sbjct: 121 QVQFMVKELLRLKEIPKPDDTADALAIAICHANS 154
>gi|186477302|ref|YP_001858772.1| Holliday junction resolvase [Burkholderia phymatum STM815]
gi|238691293|sp|B2JGU2|RUVC_BURP8 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|184193761|gb|ACC71726.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
phymatum STM815]
Length = 180
Score = 178 bits (452), Expect = 2e-43, Method: Composition-based stats.
Identities = 65/152 (42%), Positives = 98/152 (64%), Gaps = 1/152 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPGLR TG+G++D +G L +V+SG I + L RL ++EG++ +I+
Sbjct: 1 MRILGIDPGLRVTGFGVIDQSGHQLTYVTSGVIKT-ADADLPTRLGTIFEGISTLIRQHA 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ +A+E+VFVN + +TL LGQAR AI +PV+EY +K+AV+G G K+
Sbjct: 60 PDHSAIEKVFVNVNPQSTLLLGQARGAAICGLVSGGVPVAEYTALQLKQAVVGYGRATKE 119
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
Q+ M+ L+ S DAADAL +A+CHA+
Sbjct: 120 QMQQMVVRLLCLSGIPSTDAADALGMAICHAH 151
>gi|134294767|ref|YP_001118502.1| Holliday junction resolvase [Burkholderia vietnamiensis G4]
gi|166231589|sp|A4JBL4|RUVC_BURVG RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|134137924|gb|ABO53667.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
vietnamiensis G4]
Length = 180
Score = 178 bits (452), Expect = 2e-43, Method: Composition-based stats.
Identities = 69/156 (44%), Positives = 103/156 (66%), Gaps = 1/156 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPGLR TG+G++DV+G L +V+SG I + LA RL +++G++ +++
Sbjct: 1 MRILGIDPGLRVTGFGVIDVSGHRLAYVASGVIRTPT-ADLATRLGTIFQGVSTLVREHA 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P++AA+EQVFVN + +TL LGQAR AI +PV+EY +K+AV+G G K
Sbjct: 60 PDQAAIEQVFVNVNPQSTLLLGQARGAAICGLVAGGLPVAEYTALQLKQAVVGYGRATKS 119
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
Q+ M+ L+ S G DAADAL +A+CHA+ N+
Sbjct: 120 QMQEMVTRLLNLSGQPGSDAADALGMAICHAHSGNT 155
>gi|323527309|ref|YP_004229462.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia sp.
CCGE1001]
gi|323384311|gb|ADX56402.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia sp.
CCGE1001]
Length = 180
Score = 178 bits (452), Expect = 2e-43, Method: Composition-based stats.
Identities = 64/163 (39%), Positives = 101/163 (61%), Gaps = 2/163 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPGLR TG+G++D +G L +V+SG I + L RL +++G++ +I+
Sbjct: 1 MRILGIDPGLRVTGFGVIDQSGHTLSYVASGVIKT-ADADLPSRLGTIFDGISTLIRQHA 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+++A+E+VFVN + +TL LGQAR AI +PV+EY +K+AV+G G K+
Sbjct: 60 PDQSAIEKVFVNVNPQSTLLLGQARGAAICGLVAGGVPVAEYTALQLKQAVVGYGRATKE 119
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
Q+ M+ L+ S DAADAL +A+CHA+ + +
Sbjct: 120 QMQQMVVRLLSLSGVPSTDAADALGMAICHAH-GGTTLSTLGG 161
>gi|312882584|ref|ZP_07742324.1| Holliday junction resolvase [Vibrio caribbenthicus ATCC BAA-2122]
gi|309369744|gb|EFP97256.1| Holliday junction resolvase [Vibrio caribbenthicus ATCC BAA-2122]
Length = 173
Score = 178 bits (452), Expect = 3e-43, Method: Composition-based stats.
Identities = 65/163 (39%), Positives = 100/163 (61%), Gaps = 2/163 (1%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G +L ++ SG I + Q L RL Q+Y G++++I ++P
Sbjct: 3 IILGIDPGSRITGYGVIRQNGRHLQYLGSGCIRTS-EQDLPGRLKQIYAGVSEIITQFQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
E A+EQVF+ ++A + LKLGQAR AI++ + V EYA IK+AV+G G DK Q
Sbjct: 62 EVFAIEQVFMARNADSALKLGQARGSAIVAAVNNDLEVFEYAARLIKQAVVGTGAADKAQ 121
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
+ M++ ++ DAADAL +A+CHA + +A +
Sbjct: 122 VQHMVQQMLKLPAKPQADAADALGVAICHANTNKT-LVALAGK 163
>gi|241759178|ref|ZP_04757286.1| crossover junction endodeoxyribonuclease RuvC [Neisseria flavescens
SK114]
gi|241320597|gb|EER56874.1| crossover junction endodeoxyribonuclease RuvC [Neisseria flavescens
SK114]
Length = 181
Score = 178 bits (452), Expect = 3e-43, Method: Composition-based stats.
Identities = 63/160 (39%), Positives = 99/160 (61%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
RI+GIDPG R TG+G++DV G +V+SG I + SL+ R+ + + ++I++++P
Sbjct: 8 RILGIDPGSRVTGFGVIDVHGREHHYVASGCIKTPTGASLSERIAVIVRHIDEIIRHYQP 67
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+AA+EQVFVN + ATL LGQAR AI + + +PV EY +K+AV+G G K+Q
Sbjct: 68 HQAAIEQVFVNVNPAATLMLGQARGAAIAALVMHDLPVFEYTALQVKQAVVGKGKAAKEQ 127
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
+ M+ ++ S DAAD LA+A+ HA + ++
Sbjct: 128 VQHMVVQMLALSGTPQADAADGLAVALTHALRNHGLASQL 167
>gi|311104200|ref|YP_003977053.1| crossover junction endodeoxyribonuclease RuvC [Achromobacter
xylosoxidans A8]
gi|310758889|gb|ADP14338.1| crossover junction endodeoxyribonuclease RuvC [Achromobacter
xylosoxidans A8]
Length = 182
Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats.
Identities = 66/152 (43%), Positives = 100/152 (65%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+R++GIDPGLRRTG+G++D G L +V+SGTIV +L+ RL + + L V ++ +
Sbjct: 1 MRVLGIDPGLRRTGFGVIDADGPRLRYVASGTIVVPPALALSERLKVILDNLRQVARDTQ 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ AA+E +F+N + +TL LGQAR A+ + A + + V EY IKKAV+G G K+
Sbjct: 61 PDVAALEIIFLNTNPASTLLLGQARGAALCALADSSLSVHEYTALQIKKAVVGTGRAAKE 120
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
Q+ MM++ L+ D+ADALA A+CHA+
Sbjct: 121 QVQMMVQHLLALDGAPAPDSADALACAICHAH 152
>gi|304312894|ref|YP_003812492.1| Holliday junction resolvasome endonuclease subunit [gamma
proteobacterium HdN1]
gi|301798627|emb|CBL46859.1| Holliday junction resolvasome endonuclease subunit [gamma
proteobacterium HdN1]
Length = 179
Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats.
Identities = 60/154 (38%), Positives = 98/154 (63%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
I+G+DPG R TG+G++ G+ + FV G I + ++++ RL Q+Y+G+ VI+ +RPE
Sbjct: 4 ILGVDPGSRVTGYGVIKKEGNQIRFVDCGCIYTNEKEAIPVRLQQIYQGIVAVIREYRPE 63
Query: 67 EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
+A++EQVF+ +A + LKLGQAR A+++ + V EY+ K AV+G G +K Q+
Sbjct: 64 QASIEQVFMANNADSALKLGQARGSAVVACMNESVEVHEYSARQAKLAVVGTGAAEKAQV 123
Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
M+K ++ DAADAL +A+CHA ++
Sbjct: 124 QHMIKRILNLPEEPSTDAADALGLAICHANTYST 157
>gi|291165808|gb|EFE27856.1| crossover junction endodeoxyribonuclease RuvC [Filifactor alocis
ATCC 35896]
Length = 163
Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats.
Identities = 52/156 (33%), Positives = 88/156 (56%), Gaps = 1/156 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ ++GIDPG G+GI+D G + + G+I + ++ R+ ++Y+GL +I+ +
Sbjct: 1 MIVLGIDPGYAIVGYGILDYNGTSFRVIDYGSIETDAKEPFVDRIQRIYKGLCFLIEKYH 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
EE A+E++F K+A + + QAR + +L+ IPV EY P +K+ + G G K+
Sbjct: 61 IEEMAIEELFFFKNAKTVIDVAQARGVMLLAAKEHNIPVYEYTPLQVKQGICGYGKAPKE 120
Query: 125 QIHMMLK-MLMPESFFKGKDAADALAIAVCHAYHAN 159
Q+ M+K L + K D ADALAIA H + +
Sbjct: 121 QVQQMVKTTLRLKEVPKPDDTADALAIATNHCHTSR 156
>gi|212635160|ref|YP_002311685.1| Holliday junction resolvase [Shewanella piezotolerans WP3]
gi|226725476|sp|B8CNX9|RUVC_SHEPW RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|212556644|gb|ACJ29098.1| Crossover junction endodeoxyribonuclease RuvC [Shewanella
piezotolerans WP3]
Length = 173
Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats.
Identities = 66/163 (40%), Positives = 103/163 (63%), Gaps = 2/163 (1%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+G+DPG R TG+G+++ G +V SG I + + L RL Q+++GL+++I+ ++P
Sbjct: 3 IILGVDPGSRITGYGVINCVGRQQVYVGSGCIRTSSDE-LPLRLKQIFDGLSEIIRQYQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+E A+E+VF+ K+A + LKLGQAR AI++ A +PV+EY+ IK AV+G G K Q
Sbjct: 62 DEFAIERVFMAKNADSALKLGQARGAAIVAATAANLPVAEYSATQIKSAVVGTGRAQKSQ 121
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
+ M++ L+ DAADAL +AVCH YH N + +
Sbjct: 122 VQHMIQQLLKLPSAPQADAADALGVAVCH-YHTNQSLAAMGGR 163
>gi|269967684|ref|ZP_06181734.1| crossover junction endodeoxyribonuclease RuvC [Vibrio alginolyticus
40B]
gi|269827771|gb|EEZ82055.1| crossover junction endodeoxyribonuclease RuvC [Vibrio alginolyticus
40B]
Length = 173
Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats.
Identities = 67/163 (41%), Positives = 103/163 (63%), Gaps = 2/163 (1%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G +L ++ SG I + ++ L RL Q+Y G+T++I ++P
Sbjct: 3 IILGIDPGSRITGYGVIRQNGRHLQYLGSGCIRTSEKE-LPGRLKQIYAGVTEIITQFQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQVF+ K+A + LKLGQAR AI++ A +PV EYA IK+AV+G G DK Q
Sbjct: 62 DVFAIEQVFMAKNADSALKLGQARGSAIVAAVNAELPVFEYAARLIKQAVVGTGGADKAQ 121
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
+ M++ ++ DAADAL +A+CHA + +A +
Sbjct: 122 VQHMVQQMLKLPAKPQADAADALGVAICHANTNKT-LVALAGK 163
>gi|210622014|ref|ZP_03292957.1| hypothetical protein CLOHIR_00903 [Clostridium hiranonis DSM 13275]
gi|210154459|gb|EEA85465.1| hypothetical protein CLOHIR_00903 [Clostridium hiranonis DSM 13275]
Length = 167
Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats.
Identities = 52/153 (33%), Positives = 87/153 (56%), Gaps = 1/153 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ I+GIDPG+ G+G+++ G+N + G I + L RL +Y+G+ +IK++
Sbjct: 1 MIILGIDPGIAIVGYGVIEYKGNNFRVIDYGAITTPAHTDLTTRLEMVYKGVDTIIKSYD 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
+E +E++F NK+ + + QAR + +L+ A +P+ EY P IK+ V G G DK
Sbjct: 61 IDEVGIEELFFNKNVKTAITVAQARGVTLLACAHNNVPIYEYTPPQIKQGVCGYGRADKV 120
Query: 125 QIHMMLKMLMPESF-FKGKDAADALAIAVCHAY 156
++ + + K D ADALAIA+CHA+
Sbjct: 121 RVQKSVTSFLKLKKVPKPDDVADALAIAICHAH 153
>gi|262394695|ref|YP_003286549.1| crossover junction endodeoxyribonuclease RuvC [Vibrio sp. Ex25]
gi|262338289|gb|ACY52084.1| crossover junction endodeoxyribonuclease RuvC [Vibrio sp. Ex25]
Length = 173
Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats.
Identities = 67/163 (41%), Positives = 103/163 (63%), Gaps = 2/163 (1%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G +L ++ SG I + ++ L RL Q+Y G+T++I ++P
Sbjct: 3 IILGIDPGSRITGYGVIRQNGRHLQYLGSGCIRTSEKE-LPGRLKQIYAGVTEIITQFQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQVF+ K+A + LKLGQAR AI++ A +PV EYA IK+AV+G G DK Q
Sbjct: 62 DVFAIEQVFMAKNADSALKLGQARGSAIVAAVNAELPVYEYAARLIKQAVVGTGGADKAQ 121
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
+ M++ ++ DAADAL +A+CHA + +A +
Sbjct: 122 VQHMVQQMLKLPAKPQADAADALGVAICHANTNKT-LVALAGK 163
>gi|153832503|ref|ZP_01985170.1| crossover junction endodeoxyribonuclease RuvC [Vibrio harveyi HY01]
gi|156973888|ref|YP_001444795.1| Holliday junction resolvase [Vibrio harveyi ATCC BAA-1116]
gi|269963128|ref|ZP_06177463.1| crossover junction endodeoxyribonuclease RuvC [Vibrio harveyi 1DA3]
gi|166233310|sp|A7N1J2|RUVC_VIBHB RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|148871298|gb|EDL70170.1| crossover junction endodeoxyribonuclease RuvC [Vibrio harveyi HY01]
gi|156525482|gb|ABU70568.1| hypothetical protein VIBHAR_01598 [Vibrio harveyi ATCC BAA-1116]
gi|269832092|gb|EEZ86216.1| crossover junction endodeoxyribonuclease RuvC [Vibrio harveyi 1DA3]
Length = 173
Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats.
Identities = 67/163 (41%), Positives = 102/163 (62%), Gaps = 2/163 (1%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G +L ++ SG I + ++ L RL Q+Y G+T++I ++P
Sbjct: 3 IILGIDPGSRITGYGVIRQQGRHLQYLGSGCIRTSEKE-LPGRLKQIYAGVTEIITQFQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQVF+ K+A + LKLGQAR AI++ A +PV EYA IK+AV G G DK Q
Sbjct: 62 DVFAIEQVFMAKNADSALKLGQARGSAIVAAVNADLPVHEYAARLIKQAVTGTGGADKVQ 121
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
+ M++ ++ DAADAL +A+CHA + +A +
Sbjct: 122 VQHMVQHMLKLPAKPQADAADALGVAICHANTNKT-LVALAGK 163
>gi|260772518|ref|ZP_05881434.1| crossover junction endodeoxyribonuclease RuvC [Vibrio metschnikovii
CIP 69.14]
gi|260611657|gb|EEX36860.1| crossover junction endodeoxyribonuclease RuvC [Vibrio metschnikovii
CIP 69.14]
Length = 173
Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats.
Identities = 66/163 (40%), Positives = 100/163 (61%), Gaps = 2/163 (1%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G L ++ SG I + Q RL Q+Y G++++I ++P
Sbjct: 3 IILGIDPGSRITGYGVIRQQGRQLIYLGSGCIRTS-EQEFPLRLKQIYAGVSEIITQFQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQVF+ K+A + LKLGQAR AI++ A +PV EYA IK+AV+G G DK Q
Sbjct: 62 DAFAIEQVFMAKNADSALKLGQARGSAIVAAVNADLPVYEYAARLIKQAVVGTGGADKTQ 121
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
+ M++ ++ DAADAL +A+CHA + +A +
Sbjct: 122 VQHMVQQMLKLPAKPQADAADALGVAICHANTNKT-LLALAGK 163
>gi|307826388|ref|ZP_07656590.1| crossover junction endodeoxyribonuclease RuvC [Methylobacter
tundripaludum SV96]
gi|307732565|gb|EFO03440.1| crossover junction endodeoxyribonuclease RuvC [Methylobacter
tundripaludum SV96]
Length = 165
Score = 177 bits (450), Expect = 4e-43, Method: Composition-based stats.
Identities = 63/158 (39%), Positives = 103/158 (65%), Gaps = 1/158 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPG R TG+GI++ + +++SG+I RL Q+++G+ DV++ ++
Sbjct: 1 MRILGIDPGSRITGYGIIEESSRGYKYIASGSIH-IKADYFPDRLKQIFDGILDVVERYQ 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
PE+ A+EQVF++K+A + LKLGQAR AI + +PV EYA +K+AV+G G +K
Sbjct: 60 PEQMAIEQVFMHKNADSALKLGQARGAAICAFQTTGLPVFEYAARQVKQAVVGKGSAEKT 119
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGY 162
Q+ M+K+L+ DA+DAL I++CHA++ +
Sbjct: 120 QVQHMVKILLNIQGELQIDASDALGISICHAHYQQTAQ 157
>gi|237654508|ref|YP_002890822.1| Holliday junction resolvase [Thauera sp. MZ1T]
gi|237625755|gb|ACR02445.1| crossover junction endodeoxyribonuclease RuvC [Thauera sp. MZ1T]
Length = 183
Score = 177 bits (450), Expect = 4e-43, Method: Composition-based stats.
Identities = 65/151 (43%), Positives = 95/151 (62%), Gaps = 1/151 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
RI+G+DPGLR TG+G+VD G L +V+SG I + L RL L +G+ +++ +RP
Sbjct: 12 RILGLDPGLRITGFGLVDQLGTQLRYVASGCIRTR-DGELPARLKTLLDGVREIVDTYRP 70
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ AVE+VFVN + +TL LGQAR I +PV+EY +K++V+G G K+Q
Sbjct: 71 DVVAVEKVFVNVNPQSTLLLGQARGAVICGAVACDLPVAEYTALQVKQSVVGYGKAHKEQ 130
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
+ M++ L+ G DAADALA A+CHA+
Sbjct: 131 VQHMVQRLLALDASPGPDAADALACAICHAH 161
>gi|15641849|ref|NP_231481.1| Holliday junction resolvase [Vibrio cholerae O1 biovar El Tor str.
N16961]
gi|121591338|ref|ZP_01678626.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae
2740-80]
gi|121730274|ref|ZP_01682650.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae V52]
gi|147673791|ref|YP_001217381.1| Holliday junction resolvase [Vibrio cholerae O395]
gi|153824055|ref|ZP_01976722.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae B33]
gi|227081976|ref|YP_002810527.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae
M66-2]
gi|229508056|ref|ZP_04397561.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae BX
330286]
gi|229511705|ref|ZP_04401184.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae B33]
gi|229518844|ref|ZP_04408287.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae RC9]
gi|229607617|ref|YP_002878265.1| Holliday junction resolvase [Vibrio cholerae MJ-1236]
gi|254848933|ref|ZP_05238283.1| holliday junction resolvase [Vibrio cholerae MO10]
gi|255745393|ref|ZP_05419342.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholera CIRS
101]
gi|298498114|ref|ZP_07007921.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae MAK
757]
gi|20978754|sp|Q9KR00|RUVC_VIBCH RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|172047660|sp|A5F762|RUVC_VIBC3 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|254767487|sp|C3LNF0|RUVC_VIBCM RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|9656375|gb|AAF94995.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae O1
biovar El Tor str. N16961]
gi|121546802|gb|EAX56968.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae
2740-80]
gi|121627976|gb|EAX60537.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae V52]
gi|126518427|gb|EAZ75650.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae B33]
gi|146315674|gb|ABQ20213.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae
O395]
gi|227009864|gb|ACP06076.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae
M66-2]
gi|227013745|gb|ACP09955.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae
O395]
gi|229343533|gb|EEO08508.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae RC9]
gi|229351670|gb|EEO16611.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae B33]
gi|229355561|gb|EEO20482.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae BX
330286]
gi|229370272|gb|ACQ60695.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae
MJ-1236]
gi|254844638|gb|EET23052.1| holliday junction resolvase [Vibrio cholerae MO10]
gi|255737223|gb|EET92619.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholera CIRS
101]
gi|297542447|gb|EFH78497.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae MAK
757]
Length = 173
Score = 177 bits (450), Expect = 4e-43, Method: Composition-based stats.
Identities = 67/162 (41%), Positives = 101/162 (62%), Gaps = 2/162 (1%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
I+GIDPG R TG+G++ G +L ++ SG I + L RL Q+Y G++++I ++P+
Sbjct: 4 ILGIDPGSRVTGYGVIRQQGRHLIYLGSGCIRTS-DLELPLRLKQIYAGVSEIITQFQPD 62
Query: 67 EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
A+EQVF+ K+A + LKLGQAR AI++ A +PV EYA IK+AV+G G DK Q+
Sbjct: 63 AFAIEQVFMAKNADSALKLGQARGSAIVAAVNAELPVYEYAARLIKQAVVGTGAADKSQV 122
Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
M++ ++ DAADAL +A+CHA + +A Q
Sbjct: 123 QHMVQQMLKLPGKPQADAADALGVAICHANTNKT-LIALAGQ 163
>gi|312134957|ref|YP_004002295.1| crossover junction endodeoxyribonuclease ruvc [Caldicellulosiruptor
owensensis OL]
gi|311775008|gb|ADQ04495.1| crossover junction endodeoxyribonuclease RuvC [Caldicellulosiruptor
owensensis OL]
Length = 164
Score = 177 bits (450), Expect = 4e-43, Method: Composition-based stats.
Identities = 55/159 (34%), Positives = 88/159 (55%), Gaps = 2/159 (1%)
Query: 8 IGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
+GIDPG+ TG+GI++ G + G I + + R L+ L +I ++P+
Sbjct: 2 LGIDPGIALTGYGIIESKNGSEFKVIDYGKIETSNCLKKSMRFLHLHTELCSIISLYQPD 61
Query: 67 EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
A+E++F NK++ + +G+AR + IL+ + V EY P IK+++ G G DK QI
Sbjct: 62 VVAIEELFFNKNSKTAITIGEARGVIILTCIQNSLSVYEYTPLQIKQSITGYGRADKVQI 121
Query: 127 HMMLKMLMPE-SFFKGKDAADALAIAVCHAYHANSGYYK 164
M+K L+ K D ADALA+AVCH ++S Y+
Sbjct: 122 QKMVKSLLGLPEIPKPDDVADALAVAVCHILSSSSVLYQ 160
>gi|88801305|ref|ZP_01116833.1| Holliday junction resolvase [Polaribacter irgensii 23-P]
gi|88781963|gb|EAR13140.1| Holliday junction resolvase [Polaribacter irgensii 23-P]
Length = 211
Score = 177 bits (450), Expect = 4e-43, Method: Composition-based stats.
Identities = 55/155 (35%), Positives = 86/155 (55%), Gaps = 1/155 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG G+G++ V G + F+ ++ +L ++E ++I + P
Sbjct: 33 IILGIDPGTTIMGFGLIKVIGKKMEFIQMNELMLKKYDDHYLKLKLIFERTIELIDTYNP 92
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+E A+E F K+ + LKLG+A+ +A+ + IP++EY P IK AV G G+ K+Q
Sbjct: 93 DEIAIEAPFFGKNVQSMLKLGRAQGVAMAAGLSREIPITEYLPKKIKMAVTGNGNASKEQ 152
Query: 126 IHMMLKMLMPESF-FKGKDAADALAIAVCHAYHAN 159
+ MMLK L+ K DA D LA AVCH Y++
Sbjct: 153 VAMMLKSLLNLKTLPKNLDATDGLAAAVCHFYNSG 187
>gi|153217381|ref|ZP_01951132.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae
1587]
gi|153827625|ref|ZP_01980292.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae
MZO-2]
gi|153830581|ref|ZP_01983248.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae
623-39]
gi|229515227|ref|ZP_04404687.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae TMA
21]
gi|229520307|ref|ZP_04409733.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae TM
11079-80]
gi|229523865|ref|ZP_04413270.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae bv.
albensis VL426]
gi|229529130|ref|ZP_04418520.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae
12129(1)]
gi|254292162|ref|ZP_04962933.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae
AM-19226]
gi|297579366|ref|ZP_06941294.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae
RC385]
gi|124113599|gb|EAY32419.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae
1587]
gi|148873943|gb|EDL72078.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae
623-39]
gi|149737897|gb|EDM52802.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae
MZO-2]
gi|150421925|gb|EDN13901.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae
AM-19226]
gi|229332904|gb|EEN98390.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae
12129(1)]
gi|229337446|gb|EEO02463.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae bv.
albensis VL426]
gi|229342673|gb|EEO07665.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae TM
11079-80]
gi|229347932|gb|EEO12891.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae TMA
21]
gi|297536960|gb|EFH75793.1| crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae
RC385]
gi|327484399|gb|AEA78806.1| Crossover junction endodeoxyribonuclease RuvC [Vibrio cholerae
LMA3894-4]
Length = 173
Score = 177 bits (450), Expect = 4e-43, Method: Composition-based stats.
Identities = 67/162 (41%), Positives = 101/162 (62%), Gaps = 2/162 (1%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
I+GIDPG R TG+G++ G +L ++ SG I + L RL Q+Y G++++I ++P+
Sbjct: 4 ILGIDPGSRVTGYGVIRQQGRHLIYLGSGCIRTS-DLELPLRLKQIYAGVSEIITQFQPD 62
Query: 67 EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
A+EQVF+ K+A + LKLGQAR AI++ A +PV EYA IK+AV+G G DK Q+
Sbjct: 63 AFAIEQVFMAKNADSALKLGQARGSAIVAAVNADLPVYEYAARLIKQAVVGTGAADKSQV 122
Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
M++ ++ DAADAL +A+CHA + +A Q
Sbjct: 123 QHMVQQMLKLPGKPQADAADALGVAICHANTNKT-LIALAGQ 163
>gi|257440217|ref|ZP_05615972.1| crossover junction endodeoxyribonuclease RuvC [Faecalibacterium
prausnitzii A2-165]
gi|257197251|gb|EEU95535.1| crossover junction endodeoxyribonuclease RuvC [Faecalibacterium
prausnitzii A2-165]
Length = 170
Score = 177 bits (450), Expect = 4e-43, Method: Composition-based stats.
Identities = 54/163 (33%), Positives = 90/163 (55%), Gaps = 1/163 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+R++GIDPG GWG++D AG+ V G + + RL ++Y G+ +VI+ +
Sbjct: 1 MRVLGIDPGYAIVGWGVLDYAGNRFAPVDFGAVCTDAGVPFEQRLDEVYTGIREVIERTQ 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
PE A+E++F + + + +AR + +L+ A A IP+ EY P +K+AV G G KK
Sbjct: 61 PEVLAIEKLFYQHNQTTVIGVAEARGVILLAAAQAGIPIYEYTPMQVKQAVTGYGKAVKK 120
Query: 125 QIHMMLKMLMPESF-FKGKDAADALAIAVCHAYHANSGYYKIA 166
Q+ M ++L+ K D ADALA+A+ + + + A
Sbjct: 121 QVQEMTRILLHLPAVPKPDDTADALAMAITFCHTNGNQLNRFA 163
>gi|258621407|ref|ZP_05716441.1| crossover junction endodeoxyribonuclease RuvC [Vibrio mimicus
VM573]
gi|258626835|ref|ZP_05721642.1| crossover junction endodeoxyribonuclease RuvC [Vibrio mimicus
VM603]
gi|262171189|ref|ZP_06038867.1| crossover junction endodeoxyribonuclease RuvC [Vibrio mimicus
MB-451]
gi|258580882|gb|EEW05824.1| crossover junction endodeoxyribonuclease RuvC [Vibrio mimicus
VM603]
gi|258586795|gb|EEW11510.1| crossover junction endodeoxyribonuclease RuvC [Vibrio mimicus
VM573]
gi|261892265|gb|EEY38251.1| crossover junction endodeoxyribonuclease RuvC [Vibrio mimicus
MB-451]
Length = 173
Score = 177 bits (450), Expect = 4e-43, Method: Composition-based stats.
Identities = 68/162 (41%), Positives = 102/162 (62%), Gaps = 2/162 (1%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
I+GIDPG R TG+G++ G +L ++ SG I + Q L RL Q+Y G++++I ++P+
Sbjct: 4 ILGIDPGSRVTGYGVIRQQGRHLIYLGSGCIRTS-EQELPIRLKQIYAGVSEIITQFQPD 62
Query: 67 EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
A+EQVF+ K+A + LKLGQAR AI++ A +PV EYA IK+AV+G G DK Q+
Sbjct: 63 AFAIEQVFMAKNADSALKLGQARGSAIVAAVNANLPVYEYAARLIKQAVVGTGAADKSQV 122
Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
M++ ++ DAADAL +A+CHA + +A Q
Sbjct: 123 QHMVQQMLKLPGKPQADAADALGVAICHANTNKT-LIALAGQ 163
>gi|167564062|ref|ZP_02356978.1| Holliday junction resolvase [Burkholderia oklahomensis EO147]
Length = 180
Score = 177 bits (450), Expect = 4e-43, Method: Composition-based stats.
Identities = 70/156 (44%), Positives = 103/156 (66%), Gaps = 1/156 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RIIGIDPGLR TG+G++DV+G L +V+SG I + L RL +Y+G++ +I+
Sbjct: 1 MRIIGIDPGLRVTGFGVIDVSGHQLAYVASGVIKTPT-ADLPTRLGTIYDGISTLIREHT 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P++AA+E+VFVN + +TL LGQAR AI +PV+EY +K+AV+G G K+
Sbjct: 60 PDQAAIEKVFVNVNPQSTLLLGQARGAAICGLVSGGLPVAEYTALQLKQAVVGYGRATKE 119
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
Q+ M+ L+ S G DAADAL +A+CHA+ N+
Sbjct: 120 QMQEMVARLLSLSGRPGTDAADALGMAICHAHGGNT 155
>gi|307730946|ref|YP_003908170.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia sp.
CCGE1003]
gi|307585481|gb|ADN58879.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia sp.
CCGE1003]
Length = 180
Score = 177 bits (450), Expect = 4e-43, Method: Composition-based stats.
Identities = 66/152 (43%), Positives = 100/152 (65%), Gaps = 1/152 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPGLR TG+G++D +G L +V+SG I + L RL +++G++ +I+
Sbjct: 1 MRILGIDPGLRVTGFGVIDQSGHTLSYVASGVIKT-ADADLPSRLGTIFDGISTLIRQHS 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P++AA+E+VFVN + +TL LGQAR AI +PV+EY +K+AV+G G K+
Sbjct: 60 PDQAAIEKVFVNVNPQSTLLLGQARGAAICGLVAGGVPVAEYTALQLKQAVVGYGRATKE 119
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
Q+ M+ L+ S G DAADAL +A+CHA+
Sbjct: 120 QMQQMVVRLLSLSGVPGTDAADALGMAICHAH 151
>gi|160896927|ref|YP_001562509.1| Holliday junction resolvase [Delftia acidovorans SPH-1]
gi|238687185|sp|A9BUL6|RUVC_DELAS RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|160362511|gb|ABX34124.1| crossover junction endodeoxyribonuclease RuvC [Delftia acidovorans
SPH-1]
Length = 182
Score = 177 bits (450), Expect = 4e-43, Method: Composition-based stats.
Identities = 70/164 (42%), Positives = 104/164 (63%), Gaps = 3/164 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSC--VRQSLAFRLCQLYEGLTDVIKN 62
+RI+GIDPGL+ TG+G++DV G L +V+SGTI + L RL L++G+++V
Sbjct: 1 MRILGIDPGLQTTGFGVIDVDGHRLAYVASGTIRTTGIALGDLPGRLKLLFDGISEVASR 60
Query: 63 WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
++P+ +AVE VFVN + +TL LGQAR A+ + A +PV+EY +KKA+ G G
Sbjct: 61 YQPDTSAVEIVFVNVNPQSTLLLGQARGAALTALVNAGLPVAEYTALQMKKAMTGHGRAA 120
Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
K QI M++ L+ G DAADAL +A+ HA+ A + K+A
Sbjct: 121 KSQIQEMVRRLLQLPGLPGTDAADALGLAITHAH-AGAAMSKMA 163
>gi|312793293|ref|YP_004026216.1| crossover junction endodeoxyribonuclease ruvc [Caldicellulosiruptor
kristjanssonii 177R1B]
gi|312180433|gb|ADQ40603.1| crossover junction endodeoxyribonuclease RuvC [Caldicellulosiruptor
kristjanssonii 177R1B]
Length = 164
Score = 177 bits (450), Expect = 4e-43, Method: Composition-based stats.
Identities = 54/159 (33%), Positives = 88/159 (55%), Gaps = 2/159 (1%)
Query: 8 IGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
+GIDPG+ TG+GIV+ G + G I + + R LY L +I ++P+
Sbjct: 2 LGIDPGIALTGYGIVESKNGSEFKVIDYGRIETSSSLKKSMRFLHLYTELCSIISLYQPD 61
Query: 67 EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
A+E++F NK++ + +G+AR + IL+ + + EY P +K+++ G G DK QI
Sbjct: 62 VVAIEELFFNKNSKTAITIGEARGVIILTCIQNNLSIYEYTPLQVKQSITGYGRADKTQI 121
Query: 127 HMMLKMLMPE-SFFKGKDAADALAIAVCHAYHANSGYYK 164
M+K L+ K D ADALA+A+CH ++S Y+
Sbjct: 122 QKMVKSLLSLPEIPKPDDVADALAVAMCHILSSSSVLYQ 160
>gi|167571206|ref|ZP_02364080.1| Holliday junction resolvase [Burkholderia oklahomensis C6786]
Length = 180
Score = 177 bits (449), Expect = 5e-43, Method: Composition-based stats.
Identities = 70/156 (44%), Positives = 103/156 (66%), Gaps = 1/156 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RIIGIDPGLR TG+G++DV+G L +V+SG I + L RL +Y+G++ +I+
Sbjct: 1 MRIIGIDPGLRVTGFGVIDVSGHQLAYVASGVIKTPT-ADLPTRLGAIYDGISTLIREHT 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P++AA+E+VFVN + +TL LGQAR AI +PV+EY +K+AV+G G K+
Sbjct: 60 PDQAAIEKVFVNVNPQSTLLLGQARGAAICGLVSGGLPVAEYTALQLKQAVVGYGRATKE 119
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
Q+ M+ L+ S G DAADAL +A+CHA+ N+
Sbjct: 120 QMQEMVARLLSLSGRPGTDAADALGMAICHAHGGNT 155
>gi|37680471|ref|NP_935080.1| Holliday junction resolvase [Vibrio vulnificus YJ016]
gi|320155870|ref|YP_004188249.1| crossover junction endodeoxyribonuclease RuvC [Vibrio vulnificus
MO6-24/O]
gi|44888368|sp|Q7MJ75|RUVC_VIBVY RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|37199219|dbj|BAC95051.1| crossover junction endodeoxyribonuclease RuvC [Vibrio vulnificus
YJ016]
gi|319931182|gb|ADV86046.1| crossover junction endodeoxyribonuclease RuvC [Vibrio vulnificus
MO6-24/O]
Length = 173
Score = 177 bits (449), Expect = 5e-43, Method: Composition-based stats.
Identities = 68/163 (41%), Positives = 101/163 (61%), Gaps = 2/163 (1%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G +L ++ SG I + + L RL Q+Y G+T++I ++P
Sbjct: 3 IILGIDPGSRVTGYGVIRQNGRHLQYLGSGCIRTSEK-DLPGRLKQIYAGVTEIITQFQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQVF+ K+A + LKLGQAR AI+S +PV EYA IK+AV+G G DK Q
Sbjct: 62 DVFAIEQVFMAKNADSALKLGQARGAAIVSAVNHDLPVYEYAARLIKQAVVGTGGADKAQ 121
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
+ M++ ++ DAADAL +A+CHA + +A Q
Sbjct: 122 VQHMVQHMLKLPAKPQADAADALGVAICHANTNKT-LIALAGQ 163
>gi|282601163|ref|ZP_05980968.2| crossover junction endodeoxyribonuclease RuvC [Subdoligranulum
variabile DSM 15176]
gi|282570075|gb|EFB75610.1| crossover junction endodeoxyribonuclease RuvC [Subdoligranulum
variabile DSM 15176]
Length = 194
Score = 177 bits (449), Expect = 5e-43, Method: Composition-based stats.
Identities = 49/162 (30%), Positives = 89/162 (54%), Gaps = 1/162 (0%)
Query: 3 KSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
+ +R++GIDPG GWG+V+ G+ + G I++ RLC++Y+ + DV +
Sbjct: 28 RKLRVLGIDPGYAIVGWGVVEYVGNRFSPIGYGAILTEKDTPFEQRLCEIYDSVLDVCRR 87
Query: 63 WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
+ PE ++E+++ + + + +AR + +L+ A +P+ EY P +K+A+ G G
Sbjct: 88 YAPEALSIEKLYYQHNQTTVIGVAEARGVILLAAAQCGVPIYEYTPMQVKQAITGYGKAV 147
Query: 123 KKQIHMMLKMLMPES-FFKGKDAADALAIAVCHAYHANSGYY 163
KKQI M +M++ K D ADAL +A+ H + + S
Sbjct: 148 KKQIQEMTRMMLHLETIPKPDDTADALGMAIAHCHCSRSRLM 189
>gi|28897822|ref|NP_797427.1| Holliday junction resolvase [Vibrio parahaemolyticus RIMD 2210633]
gi|153839739|ref|ZP_01992406.1| crossover junction endodeoxyribonuclease RuvC [Vibrio
parahaemolyticus AQ3810]
gi|260361819|ref|ZP_05774836.1| crossover junction endodeoxyribonuclease RuvC [Vibrio
parahaemolyticus K5030]
gi|260876982|ref|ZP_05889337.1| crossover junction endodeoxyribonuclease RuvC [Vibrio
parahaemolyticus AN-5034]
gi|260898719|ref|ZP_05907215.1| crossover junction endodeoxyribonuclease RuvC [Vibrio
parahaemolyticus Peru-466]
gi|260901354|ref|ZP_05909749.1| crossover junction endodeoxyribonuclease RuvC [Vibrio
parahaemolyticus AQ4037]
gi|31076903|sp|Q87QV1|RUVC_VIBPA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|28806035|dbj|BAC59311.1| crossover junction endodeoxyribonuclease RuvC [Vibrio
parahaemolyticus RIMD 2210633]
gi|149746737|gb|EDM57725.1| crossover junction endodeoxyribonuclease RuvC [Vibrio
parahaemolyticus AQ3810]
gi|308089510|gb|EFO39205.1| crossover junction endodeoxyribonuclease RuvC [Vibrio
parahaemolyticus Peru-466]
gi|308093877|gb|EFO43572.1| crossover junction endodeoxyribonuclease RuvC [Vibrio
parahaemolyticus AN-5034]
gi|308109589|gb|EFO47129.1| crossover junction endodeoxyribonuclease RuvC [Vibrio
parahaemolyticus AQ4037]
gi|308113338|gb|EFO50878.1| crossover junction endodeoxyribonuclease RuvC [Vibrio
parahaemolyticus K5030]
gi|328473205|gb|EGF44053.1| Holliday junction resolvase [Vibrio parahaemolyticus 10329]
Length = 173
Score = 177 bits (449), Expect = 5e-43, Method: Composition-based stats.
Identities = 67/163 (41%), Positives = 103/163 (63%), Gaps = 2/163 (1%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G +L ++ SG I + ++ L RL Q+Y G+T++I ++P
Sbjct: 3 IILGIDPGSRITGYGVIRQQGRHLQYLGSGCIRTSEKE-LPGRLKQIYAGVTEIITQFQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQVF+ K+A + LKLGQAR AI++ A +PV EYA IK+AV+G G DK Q
Sbjct: 62 DVFAIEQVFMAKNADSALKLGQARGSAIVAAVNADLPVYEYAARLIKQAVVGTGGADKVQ 121
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
+ M++ ++ DAADAL +A+CHA + +A +
Sbjct: 122 VQHMVQHMLKLPAKPQADAADALGVAICHANTNKT-LVALAGK 163
>gi|188586413|ref|YP_001917958.1| Holliday junction endonuclease RuvC [Natranaerobius thermophilus
JW/NM-WN-LF]
gi|229558766|sp|B2A5L6|RUVC_NATTJ RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|179351100|gb|ACB85370.1| Holliday junction endonuclease RuvC [Natranaerobius thermophilus
JW/NM-WN-LF]
Length = 161
Score = 177 bits (449), Expect = 6e-43, Method: Composition-based stats.
Identities = 52/161 (32%), Positives = 92/161 (57%), Gaps = 3/161 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ I+G+DPG+ G+GI+ G L ++ G + + +S RL +Y+G++++I +
Sbjct: 1 MIIMGLDPGIAACGYGIIHAKGTKLECLACGVLRTYSDESATKRLESIYQGVSNLISEFS 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P AVE +F K++ +K+GQA+ + +L+ A + + EY P +K+ V G G K+
Sbjct: 61 PNTVAVESLFFAKNSKTAMKVGQAKGVLMLAAAHNNLEIFEYTPLQVKQGVCGYGSASKE 120
Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCH--AYHANSGY 162
Q+ M+K ++ K DAADALA+++CH AY +
Sbjct: 121 QVQKMVKQILSLDKIPKPDDAADALAVSLCHSQAYRLRTRL 161
>gi|304317017|ref|YP_003852162.1| crossover junction endodeoxyribonuclease RuvC
[Thermoanaerobacterium thermosaccharolyticum DSM 571]
gi|302778519|gb|ADL69078.1| crossover junction endodeoxyribonuclease RuvC
[Thermoanaerobacterium thermosaccharolyticum DSM 571]
Length = 165
Score = 176 bits (448), Expect = 6e-43, Method: Composition-based stats.
Identities = 60/164 (36%), Positives = 97/164 (59%), Gaps = 2/164 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RIIGIDPG+ G+GI+D + G I + V + RL ++Y+G +I+ +R
Sbjct: 1 MRIIGIDPGIAIMGYGIIDDDCGKFKVLEYGAITTRVGIKKSIRLKEIYDGTILLIEKYR 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ A+E++F NK+A + +G++R +AIL+ I V EY P +K++V+G G +KK
Sbjct: 61 PDVMAIEELFFNKNAKTVITIGESRGVAILAAVNCGIDVFEYTPLQVKQSVVGYGRAEKK 120
Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
Q+ M+K ++ K D ADALA+A+CH +N K+ S
Sbjct: 121 QVQNMVKAILGLNEIPKPDDVADALAVALCHCN-SNIMNMKLGS 163
>gi|222529106|ref|YP_002572988.1| Holliday junction resolvase [Caldicellulosiruptor bescii DSM 6725]
gi|222455953|gb|ACM60215.1| crossover junction endodeoxyribonuclease RuvC [Caldicellulosiruptor
bescii DSM 6725]
Length = 164
Score = 176 bits (448), Expect = 6e-43, Method: Composition-based stats.
Identities = 52/159 (32%), Positives = 88/159 (55%), Gaps = 2/159 (1%)
Query: 8 IGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
+GIDPG+ TG+GI++ G + G I + + R LY L +I ++P+
Sbjct: 2 LGIDPGIALTGYGIIESKNGSEFKVIDYGRIETSSSLKKSMRFLHLYTELCSIISLYQPD 61
Query: 67 EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
A+E++F NK++ + +G+AR + IL+ + + EY P +K+++ G G +K QI
Sbjct: 62 VVAIEELFFNKNSKTAITIGEARGVIILTCIQNNLSIYEYTPLQVKQSITGYGRANKTQI 121
Query: 127 HMMLKMLMPE-SFFKGKDAADALAIAVCHAYHANSGYYK 164
M+K L+ K D ADALA+A+CH ++S Y+
Sbjct: 122 QKMVKSLLSLPEIPKPDDVADALAVAMCHILSSSSVLYQ 160
>gi|160942949|ref|ZP_02090188.1| hypothetical protein FAEPRAM212_00426 [Faecalibacterium prausnitzii
M21/2]
gi|158445850|gb|EDP22853.1| hypothetical protein FAEPRAM212_00426 [Faecalibacterium prausnitzii
M21/2]
Length = 170
Score = 176 bits (448), Expect = 6e-43, Method: Composition-based stats.
Identities = 52/161 (32%), Positives = 89/161 (55%), Gaps = 1/161 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+R++GIDPG GWG+V+ AG+ V G + + RL ++Y G+ +VI+ +
Sbjct: 1 MRVLGIDPGYAIVGWGVVEYAGNRFAPVDFGAVCTDAGVPFERRLDEVYTGIKEVIERTK 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
PE A+E++F + + + +AR + +L+ A A +P+ EY P +K+AV G G KK
Sbjct: 61 PEVLAIEKLFYQHNQTTVIGVAEARGVILLAAAQAGLPIYEYTPMQVKQAVTGYGKAVKK 120
Query: 125 QIHMMLKMLMPESF-FKGKDAADALAIAVCHAYHANSGYYK 164
Q+ M ++L+ K D ADALA+A+ + + +
Sbjct: 121 QVQEMTRVLLHLPAVPKPDDTADALAMAITFCHTNGNQLNR 161
>gi|156345604|ref|XP_001621416.1| hypothetical protein NEMVEDRAFT_v1g222014 [Nematostella vectensis]
gi|156207323|gb|EDO29316.1| predicted protein [Nematostella vectensis]
Length = 162
Score = 176 bits (448), Expect = 7e-43, Method: Composition-based stats.
Identities = 61/154 (39%), Positives = 97/154 (62%), Gaps = 1/154 (0%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
I+GIDPG R TG+G+V G N +V+SG I + S+ RL ++ G+ +VI+ + P
Sbjct: 4 ILGIDPGSRITGYGVVRDTGRNCEYVASGCIRTGNG-SMPERLQVVFRGVREVIETYGPV 62
Query: 67 EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
+EQVF+ ++ + LKLGQAR +AI++ A + +++Y +K+A+ G G DK+Q+
Sbjct: 63 TMGIEQVFMARNPDSALKLGQARGVAIVAGMEAGLDIAQYTATQVKQAIAGSGGADKEQV 122
Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
+M+ L+ DA+DALAIA+CHA+H S
Sbjct: 123 QLMVMHLLKLVQKPQIDASDALAIALCHAHHRQS 156
>gi|260467056|ref|ZP_05813236.1| crossover junction endodeoxyribonuclease RuvC [Mesorhizobium
opportunistum WSM2075]
gi|259029165|gb|EEW30461.1| crossover junction endodeoxyribonuclease RuvC [Mesorhizobium
opportunistum WSM2075]
Length = 170
Score = 176 bits (448), Expect = 7e-43, Method: Composition-based stats.
Identities = 109/167 (65%), Positives = 136/167 (81%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M +IRIIGIDPGLRRTGWGIV+ G++L FV+SGT+ S + +LA RLCQL++GL +V+
Sbjct: 1 MGDAIRIIGIDPGLRRTGWGIVESLGNSLRFVASGTVRSEDKAALATRLCQLHDGLAEVL 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
P EAAVEQ FVNKDAVATLKLGQAR IA+L PA A + V+EYAPN +KKAVIGVGH
Sbjct: 61 HAAMPHEAAVEQTFVNKDAVATLKLGQARGIAMLVPARAGLVVAEYAPNAVKKAVIGVGH 120
Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
GDKKQIHMM+K+L+P++ F + AADALAIA+CHA+H S Y++A+
Sbjct: 121 GDKKQIHMMVKVLLPKATFDTEHAADALAIAICHAHHRQSVAYRMAA 167
>gi|301060165|ref|ZP_07201032.1| crossover junction endodeoxyribonuclease RuvC [delta
proteobacterium NaphS2]
gi|300445677|gb|EFK09575.1| crossover junction endodeoxyribonuclease RuvC [delta
proteobacterium NaphS2]
Length = 167
Score = 176 bits (447), Expect = 8e-43, Method: Composition-based stats.
Identities = 54/165 (32%), Positives = 96/165 (58%)
Query: 4 SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
IR++G+DPGLR TG+G+++ + F+ +G I + A ++ ++++G ++++ +
Sbjct: 1 MIRVLGVDPGLRITGYGLLEEKNRRISFMEAGLIKPPEKLPFARKIHRIFQGTVELLERF 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
+P+ AVE +F K+A ++LKLG AR + + I V EY P IKK+V+G G DK
Sbjct: 61 KPDAMAVEDLFYAKNARSSLKLGHARGAILAAAGQHDISVFEYTPLEIKKSVVGYGRADK 120
Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
+Q+ M+ ++ DA+DALA A+CH + + S+
Sbjct: 121 EQVRSMVNAILGLKKQVPIDASDALATAICHVNSSGLRMLQEKSR 165
>gi|291533990|emb|CBL07103.1| crossover junction endodeoxyribonuclease RuvC [Megamonas
hypermegale ART12/1]
Length = 164
Score = 176 bits (447), Expect = 8e-43, Method: Composition-based stats.
Identities = 55/161 (34%), Positives = 93/161 (57%), Gaps = 1/161 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ +GIDPG G+G+VD+ G L + G I++ + RL +++ LTD+I+ ++
Sbjct: 1 MLALGIDPGTAICGYGLVDMQGSRLKAIEYGAILTSPQMRPQDRLLKIHRELTDIIQKYK 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ VEQ+F N++ + +GQAR I +L+ A +I + E P IK++V+G G K+
Sbjct: 61 PDVMGVEQLFFNRNVTTAIPVGQARGIVLLTAAENQIELVERTPLQIKQSVVGFGRASKE 120
Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHANSGYYK 164
Q+ M+ L+ K D ADALA+A+C + NS ++
Sbjct: 121 QVIYMVTKLLHLPEPPKPDDVADALAVAICTTHCMNSLTWR 161
>gi|222112137|ref|YP_002554401.1| holliday junction resolvase [Acidovorax ebreus TPSY]
gi|254767470|sp|B9MFQ0|RUVC_DIAST RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|221731581|gb|ACM34401.1| crossover junction endodeoxyribonuclease RuvC [Acidovorax ebreus
TPSY]
Length = 186
Score = 176 bits (447), Expect = 8e-43, Method: Composition-based stats.
Identities = 70/168 (41%), Positives = 104/168 (61%), Gaps = 7/168 (4%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQ------SLAFRLCQLYEGLTD 58
+RI+GIDPGL+ TG+G+VDV G L +V+SGTI + R L RL L++G+++
Sbjct: 1 MRILGIDPGLQTTGFGVVDVDGHRLRYVASGTIRTTGRATGLALGDLPGRLKVLFDGVSE 60
Query: 59 VIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGV 118
V ++P AAVE +FVN + +TL LGQAR A+ + A +PV+EY +KKAV+G
Sbjct: 61 VAARYQPSTAAVEIIFVNVNPQSTLLLGQARGAALTALVNANLPVAEYTALQMKKAVVGH 120
Query: 119 GHGDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
G K Q+ M++ L+ G DAADAL +A+ HA+ A + ++
Sbjct: 121 GRAAKSQVQEMVRRLLELPGLPGTDAADALGLAITHAH-AGAAMARVG 167
>gi|221202295|ref|ZP_03575329.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
multivorans CGD2M]
gi|221209109|ref|ZP_03582103.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
multivorans CGD2]
gi|221171013|gb|EEE03466.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
multivorans CGD2]
gi|221177869|gb|EEE10282.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
multivorans CGD2M]
Length = 180
Score = 176 bits (447), Expect = 8e-43, Method: Composition-based stats.
Identities = 68/156 (43%), Positives = 102/156 (65%), Gaps = 1/156 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPGLR TG+G++DV+G L +V+SG I + LA RL ++ G++ +++
Sbjct: 1 MRILGIDPGLRVTGFGVIDVSGHRLAYVASGVIRTPT-ADLATRLGTIFAGVSTLVREHA 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P++AA+E+VFVN + +TL LGQAR AI +PV+EY +K+A++G G K
Sbjct: 60 PDQAAIEKVFVNVNPQSTLLLGQARGAAICGLVSGGLPVAEYTALQLKQAIVGYGRATKA 119
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
Q+ M+ L+ S G DAADAL IA+CHA+ N+
Sbjct: 120 QMQEMVTRLLSLSGQPGSDAADALGIAICHAHGGNT 155
>gi|78065252|ref|YP_368021.1| Holliday junction resolvase [Burkholderia sp. 383]
gi|90146438|sp|Q39JI9|RUVC_BURS3 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|77965997|gb|ABB07377.1| Crossover junction endodeoxyribonuclease RuvC [Burkholderia sp.
383]
Length = 180
Score = 176 bits (447), Expect = 8e-43, Method: Composition-based stats.
Identities = 68/156 (43%), Positives = 103/156 (66%), Gaps = 1/156 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPGLR TG+GI+DV+G L +V+SG I + LA RL +++G++ +++
Sbjct: 1 MRILGIDPGLRVTGFGIIDVSGHRLAYVASGVIRTPT-ADLATRLGTIFQGVSTIVREHA 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+++A+E+VFVN + +TL LGQAR AI +PV+EY +K+AV+G G K
Sbjct: 60 PDQSAIEKVFVNVNPQSTLLLGQARGAAICGLVAGGLPVAEYTALQLKQAVVGYGRATKT 119
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
Q+ M+ L+ S G DAADAL +A+CHA+ N+
Sbjct: 120 QMQEMVTRLLNLSGQPGSDAADALGMAICHAHGGNT 155
>gi|27365487|ref|NP_761015.1| Holliday junction resolvase [Vibrio vulnificus CMCP6]
gi|29611845|sp|Q8DAN6|RUVC_VIBVU RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|27361635|gb|AAO10542.1| crossover junction endodeoxyribonuclease RuvC [Vibrio vulnificus
CMCP6]
Length = 173
Score = 176 bits (447), Expect = 8e-43, Method: Composition-based stats.
Identities = 68/163 (41%), Positives = 101/163 (61%), Gaps = 2/163 (1%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G +L ++ SG I + + L RL Q+Y G+T++I ++P
Sbjct: 3 IILGIDPGSRVTGYGVIRQNGRHLQYLGSGCIRTSEK-DLPGRLKQIYAGVTEIITQFQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQVF+ K+A + LKLGQAR AI+S +PV EYA IK+AV+G G DK Q
Sbjct: 62 DAFAIEQVFMAKNADSALKLGQARGAAIVSAVNHDLPVYEYAARLIKQAVVGTGGADKAQ 121
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
+ M++ ++ DAADAL +A+CHA + +A Q
Sbjct: 122 VQHMVQHMLKLPAKPQADAADALGVAICHANTNKT-LIALAGQ 163
>gi|312797265|ref|YP_004030187.1| Crossover junction endodeoxyribonuclease ruvC [Burkholderia
rhizoxinica HKI 454]
gi|312169040|emb|CBW76043.1| Crossover junction endodeoxyribonuclease ruvC (EC 3.1.22.4)
[Burkholderia rhizoxinica HKI 454]
Length = 194
Score = 176 bits (447), Expect = 9e-43, Method: Composition-based stats.
Identities = 66/155 (42%), Positives = 98/155 (63%), Gaps = 1/155 (0%)
Query: 4 SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
++RI+GIDPGLR TG+G++D G L +V+SG I + L RL +++G+ +I+
Sbjct: 14 TMRILGIDPGLRVTGFGVIDKHGHALTYVASGVIRT-ANADLPSRLGTIFDGVATLIREH 72
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
P++AA+E+VFVN + +TL LGQAR AI + R+ V+EY +K+AV+G G K
Sbjct: 73 SPDQAAIEKVFVNVNPQSTLLLGQARGAAICALVSGRVSVAEYTALQLKQAVVGYGRATK 132
Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHA 158
Q+ M+ L+ S G DAADAL +A+CHA
Sbjct: 133 DQMQQMVVRLLNLSGLPGTDAADALGMAICHANSG 167
>gi|162146621|ref|YP_001601080.1| Holliday junction resolvase [Gluconacetobacter diazotrophicus PAl
5]
gi|209543387|ref|YP_002275616.1| Holliday junction resolvase [Gluconacetobacter diazotrophicus PAl
5]
gi|189046069|sp|A9HAV5|RUVC_GLUDA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|161785196|emb|CAP54742.1| Crossover junction endodeoxyribonuclease ruvC [Gluconacetobacter
diazotrophicus PAl 5]
gi|209531064|gb|ACI51001.1| crossover junction endodeoxyribonuclease RuvC [Gluconacetobacter
diazotrophicus PAl 5]
Length = 168
Score = 176 bits (447), Expect = 9e-43, Method: Composition-based stats.
Identities = 76/164 (46%), Positives = 110/164 (67%)
Query: 4 SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R++GIDPGLR TGWG+VDV G+ LC V+ G I + + RL L++ L D+++ +
Sbjct: 1 MVRLLGIDPGLRFTGWGLVDVDGNRLCHVADGVIATDGDAPVPERLRCLHDSLLDLVRRY 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
P EAAVE+ +VN++ +TLKLG AR +A+L PALA I VSEY +K+AV+G G K
Sbjct: 61 GPREAAVEETYVNRNGASTLKLGYARGVALLVPALAGIAVSEYGAMAVKRAVVGTGAASK 120
Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
Q+ MM++ L+P + + DA+DALA+A+CHA+H S A
Sbjct: 121 DQVEMMVRRLLPGATIRRADASDALAVAICHAHHRASALRVSAG 164
>gi|115350637|ref|YP_772476.1| Holliday junction resolvase [Burkholderia ambifaria AMMD]
gi|170699607|ref|ZP_02890646.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
ambifaria IOP40-10]
gi|171319640|ref|ZP_02908734.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
ambifaria MEX-5]
gi|122324003|sp|Q0BI81|RUVC_BURCM RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|115280625|gb|ABI86142.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
ambifaria AMMD]
gi|170135489|gb|EDT03778.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
ambifaria IOP40-10]
gi|171095131|gb|EDT40137.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
ambifaria MEX-5]
Length = 183
Score = 176 bits (447), Expect = 9e-43, Method: Composition-based stats.
Identities = 67/156 (42%), Positives = 103/156 (66%), Gaps = 1/156 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPGLR TG+G++DV+G L +V+SG I + LA RL +++G++ +++
Sbjct: 1 MRILGIDPGLRVTGFGVIDVSGHRLAYVASGVIRTPT-ADLATRLGTIFQGVSTLVREHA 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P++AA+EQVFVN + +TL LGQAR AI +PV+EY +K+AV+G G K
Sbjct: 60 PDQAAIEQVFVNVNPQSTLLLGQARGAAICGLVSGGLPVAEYTALQLKQAVVGYGRATKS 119
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
Q+ M+ L+ + G DAADAL +A+CHA+ ++
Sbjct: 120 QMQEMVTRLLNLTGQPGSDAADALGMAICHAHSGST 155
>gi|256420289|ref|YP_003120942.1| crossover junction endodeoxyribonuclease RuvC [Chitinophaga
pinensis DSM 2588]
gi|256035197|gb|ACU58741.1| crossover junction endodeoxyribonuclease RuvC [Chitinophaga
pinensis DSM 2588]
Length = 202
Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats.
Identities = 54/160 (33%), Positives = 91/160 (56%), Gaps = 1/160 (0%)
Query: 2 RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
KS I+GIDPG G+G++ V G + + + RL ++ + ++I+
Sbjct: 19 NKSKIILGIDPGTLVMGYGLILVEGSKASLLDMNVLKLSRHKDHYERLQLIHARVHELIR 78
Query: 62 NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
+P A+E F K+ + LKLG+A+ +AI + A +PV+EYAP +K+++ G G+
Sbjct: 79 EHKPVSCAIEAPFFGKNVQSMLKLGRAQGVAIATAMQAGVPVTEYAPKKVKQSITGNGNA 138
Query: 122 DKKQIHMMLKMLMP-ESFFKGKDAADALAIAVCHAYHANS 160
DK+QI ML+ ++ + DA+DALA+AVCH + +S
Sbjct: 139 DKEQIWQMLQRILHFNERPEFLDASDALAVAVCHFFQESS 178
>gi|319781016|ref|YP_004140492.1| crossover junction endodeoxyribonuclease RuvC [Mesorhizobium ciceri
biovar biserrulae WSM1271]
gi|317166904|gb|ADV10442.1| crossover junction endodeoxyribonuclease RuvC [Mesorhizobium ciceri
biovar biserrulae WSM1271]
Length = 169
Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats.
Identities = 108/166 (65%), Positives = 136/166 (81%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M ++IRIIGIDPGLRRTGWGIV+ G++L F++SGT+ S + +LA RLCQL++GL +V+
Sbjct: 1 MAEAIRIIGIDPGLRRTGWGIVESLGNSLRFIASGTVKSDDKAALATRLCQLHDGLAEVL 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
P EAAVEQ FVNKDAVATLKLGQAR IA+L PA A + V+EYAPN +KKAVIGVGH
Sbjct: 61 HAAMPHEAAVEQTFVNKDAVATLKLGQARGIAMLVPARAGLVVAEYAPNAVKKAVIGVGH 120
Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
GDKKQIHMM+K+L+P++ F + AADALAIA+CHA+H S Y++A
Sbjct: 121 GDKKQIHMMVKVLLPKAVFDTEHAADALAIAICHAHHRQSVAYRMA 166
>gi|172059670|ref|YP_001807322.1| Holliday junction resolvase [Burkholderia ambifaria MC40-6]
gi|238689179|sp|B1YTE1|RUVC_BURA4 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|171992187|gb|ACB63106.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
ambifaria MC40-6]
Length = 183
Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats.
Identities = 69/163 (42%), Positives = 105/163 (64%), Gaps = 2/163 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPGLR TG+G++DV+G L +V+SG I + LA RL +++G++ +++
Sbjct: 1 MRILGIDPGLRVTGFGVIDVSGHRLAYVASGVIRTPT-ADLATRLGTIFQGVSTLVREHA 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P++AA+EQVFVN + +TL LGQAR AI +PV+EY +K+AV+G G K
Sbjct: 60 PDQAAIEQVFVNVNPQSTLLLGQARGAAICGLVSGGLPVAEYTALQLKQAVVGYGRATKS 119
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
Q+ M+ L+ + G DAADAL +A+CHA+ + S I +
Sbjct: 120 QMQEMVTRLLNLTGQPGSDAADALGMAICHAH-SGSTLGAIGA 161
>gi|91218360|ref|ZP_01255304.1| Holliday junction resolvase [Psychroflexus torquis ATCC 700755]
gi|91183498|gb|EAS69897.1| Holliday junction resolvase [Psychroflexus torquis ATCC 700755]
Length = 184
Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats.
Identities = 49/160 (30%), Positives = 90/160 (56%), Gaps = 1/160 (0%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M I+GIDPG G+G++++ + + F+ ++ +L +++ D+I
Sbjct: 1 MATERIILGIDPGTTIMGFGVIEIVNNKMKFIQLNELMLKKYDDPYTKLKLIFDRTIDLI 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
+ P+E A+E F K+ + LKLG+A+ +A+ + ++P++EY P IK A+ G G+
Sbjct: 61 DTFHPDEIAIEAPFFGKNVQSMLKLGRAQGVAMAAGLSRQVPITEYLPKKIKMAITGNGN 120
Query: 121 GDKKQIHMMLKMLMP-ESFFKGKDAADALAIAVCHAYHAN 159
K+Q+ ML+ ++ + K D+ D LA AVCH Y++N
Sbjct: 121 ASKEQVAKMLQQMLKIKELPKNLDSTDGLAAAVCHFYNSN 160
>gi|13473342|ref|NP_104909.1| Holliday junction resolvase [Mesorhizobium loti MAFF303099]
gi|20978750|sp|Q98F72|RUVC_RHILO RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|14024091|dbj|BAB50695.1| Holliday junction nuclease; RuvC [Mesorhizobium loti MAFF303099]
Length = 169
Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats.
Identities = 109/166 (65%), Positives = 135/166 (81%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M +IRIIGIDPGLRRTGWGIV+ G++L FV+SGT+ S + +LA RLCQL++GL +V+
Sbjct: 1 MGDAIRIIGIDPGLRRTGWGIVESLGNSLRFVASGTVRSEDKAALATRLCQLHDGLAEVL 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
P EAAVEQ FVNKDAVATLKLGQAR IA+L PA A + V+EYAPN +KKAVIGVGH
Sbjct: 61 HAAMPHEAAVEQTFVNKDAVATLKLGQARGIAMLVPARAGLVVAEYAPNAVKKAVIGVGH 120
Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
GDKKQIHMM+K+L+P++ F + AADALAIA+CHA+H S Y++A
Sbjct: 121 GDKKQIHMMVKVLLPKATFDTEHAADALAIAICHAHHRQSAAYRMA 166
>gi|119896862|ref|YP_932075.1| Holliday junction resolvase [Azoarcus sp. BH72]
gi|166231579|sp|A1K2Y3|RUVC_AZOSB RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|119669275|emb|CAL93188.1| crossover junction endodeoxyribonuclease [Azoarcus sp. BH72]
Length = 183
Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats.
Identities = 63/148 (42%), Positives = 92/148 (62%), Gaps = 1/148 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
RI+G+DPGLR TG+G++D G L +V+SG I + L RL L +G+ +VI ++P
Sbjct: 11 RILGLDPGLRITGFGVIDTLGSQLRYVASGCIKTR-DGELPGRLKTLLDGVREVIATYQP 69
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ AVE+VFVN + +TL LGQAR I +PV+EY +K++V+G G K+Q
Sbjct: 70 DAVAVEKVFVNVNPQSTLLLGQARGAVICGAVSCDLPVAEYTALQVKQSVVGYGKAAKEQ 129
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVC 153
+ M++ L+ G DAADALA A+C
Sbjct: 130 VQHMVQRLLALDASPGPDAADALACAIC 157
>gi|161525863|ref|YP_001580875.1| Holliday junction resolvase [Burkholderia multivorans ATCC 17616]
gi|189349416|ref|YP_001945044.1| Holliday junction resolvase [Burkholderia multivorans ATCC 17616]
gi|221214499|ref|ZP_03587470.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
multivorans CGD1]
gi|226698747|sp|A9AH71|RUVC_BURM1 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|160343292|gb|ABX16378.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
multivorans ATCC 17616]
gi|189333438|dbj|BAG42508.1| crossover junction endodeoxyribonuclease [Burkholderia multivorans
ATCC 17616]
gi|221165756|gb|EED98231.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
multivorans CGD1]
Length = 180
Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats.
Identities = 68/156 (43%), Positives = 102/156 (65%), Gaps = 1/156 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPGLR TG+G++DV+G L +V+SG I + LA RL ++ G++ +++
Sbjct: 1 MRILGIDPGLRVTGFGVIDVSGHQLAYVASGVIRTPT-ADLATRLGTIFAGVSTLVREHA 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P++AA+E+VFVN + +TL LGQAR AI +PV+EY +K+A++G G K
Sbjct: 60 PDQAAIEKVFVNVNPQSTLLLGQARGAAICGLVSGGLPVAEYTALQLKQAIVGYGRATKA 119
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
Q+ M+ L+ S G DAADAL IA+CHA+ N+
Sbjct: 120 QMQEMVTRLLSLSGQPGSDAADALGIAICHAHGGNT 155
>gi|312113734|ref|YP_004011330.1| crossover junction endodeoxyribonuclease RuvC [Rhodomicrobium
vannielii ATCC 17100]
gi|311218863|gb|ADP70231.1| crossover junction endodeoxyribonuclease RuvC [Rhodomicrobium
vannielii ATCC 17100]
Length = 173
Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats.
Identities = 80/156 (51%), Positives = 110/156 (70%)
Query: 2 RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
+ +RI+G+DPGL GWG+VD G L FV+ GTI + +++ RL L+EGL +V++
Sbjct: 3 KPPVRILGLDPGLCHLGWGVVDWDGQRLTFVACGTIDTGAGEAMGQRLTALFEGLNEVVR 62
Query: 62 NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
P+EAA+E+ FVN +A A LKLGQAR +A+L PA + V+EYAPN+IKK V G GH
Sbjct: 63 AHAPDEAAIEETFVNTNARAALKLGQARGVALLVPARLGLSVAEYAPNSIKKTVTGAGHA 122
Query: 122 DKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYH 157
DK QI ML+ L+P++ DAADALA+A+CHA+H
Sbjct: 123 DKVQIRTMLRYLLPKAQPATPDAADALAVAICHAHH 158
>gi|107021767|ref|YP_620094.1| Holliday junction resolvase [Burkholderia cenocepacia AU 1054]
gi|116688713|ref|YP_834336.1| Holliday junction resolvase [Burkholderia cenocepacia HI2424]
gi|206561675|ref|YP_002232440.1| Holliday junction resolvase [Burkholderia cenocepacia J2315]
gi|254246307|ref|ZP_04939628.1| Holliday junction resolvasome, endonuclease subunit [Burkholderia
cenocepacia PC184]
gi|123371877|sp|Q1BZ34|RUVC_BURCA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|166231585|sp|A0K4L6|RUVC_BURCH RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|238693124|sp|B4EES5|RUVC_BURCJ RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|105891956|gb|ABF75121.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
cenocepacia AU 1054]
gi|116646802|gb|ABK07443.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
cenocepacia HI2424]
gi|124871083|gb|EAY62799.1| Holliday junction resolvasome, endonuclease subunit [Burkholderia
cenocepacia PC184]
gi|198037717|emb|CAR53660.1| crossover junction endodeoxyribonuclease [Burkholderia cenocepacia
J2315]
Length = 180
Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats.
Identities = 68/156 (43%), Positives = 103/156 (66%), Gaps = 1/156 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPGLR TG+G++DV+G L +V+SG I + LA RL +++G++ +++
Sbjct: 1 MRILGIDPGLRVTGFGVIDVSGHRLAYVTSGVIRTPT-ADLATRLGTIFQGVSTIVREHA 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P++AA+E+VFVN + +TL LGQAR AI +PV+EY +K+AV+G G K
Sbjct: 60 PDQAAIEKVFVNVNPQSTLLLGQARGAAICGLVAGGLPVAEYTALQLKQAVVGYGRATKT 119
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
Q+ M+ L+ S G DAADAL +A+CHA+ N+
Sbjct: 120 QMQEMVTRLLNLSGQPGSDAADALGMAICHAHGGNT 155
>gi|329113837|ref|ZP_08242608.1| Crossover junction endodeoxyribonuclease RuvC [Acetobacter pomorum
DM001]
gi|326696847|gb|EGE48517.1| Crossover junction endodeoxyribonuclease RuvC [Acetobacter pomorum
DM001]
Length = 168
Score = 175 bits (445), Expect = 1e-42, Method: Composition-based stats.
Identities = 75/164 (45%), Positives = 109/164 (66%)
Query: 4 SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R++GIDPGLR TGWG++DV G+ L V +G I + S+ RL L++ L +I
Sbjct: 1 MVRLLGIDPGLRFTGWGVIDVEGNRLRHVENGIIATNSADSVPDRLKVLHDNLLMLINRL 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
P EAAVE+ +VN++ ATLKLG AR +A+L PAL + V+EY ++KK+V+G G DK
Sbjct: 61 EPAEAAVEETYVNRNGSATLKLGYARGVALLVPALVGVSVAEYGALSVKKSVVGTGSADK 120
Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
KQ+ MM++ L+P + DA+DALA+A+CHA+H S + A
Sbjct: 121 KQVEMMVRRLLPGAEIVRADASDALAVAICHAHHRASARHIAAG 164
>gi|325529032|gb|EGD06042.1| Holliday junction resolvase [Burkholderia sp. TJI49]
Length = 180
Score = 175 bits (445), Expect = 1e-42, Method: Composition-based stats.
Identities = 68/156 (43%), Positives = 103/156 (66%), Gaps = 1/156 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPGLR TG+G++DV+G L +V+SG I + LA RL +++G++ +++
Sbjct: 1 MRILGIDPGLRVTGFGVIDVSGHRLAYVTSGVIRTPT-ADLATRLGTIFQGVSTLVREHA 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P++AA+E+VFVN + +TL LGQAR AI +PV+EY +K+AV+G G K
Sbjct: 60 PDQAAIEKVFVNVNPQSTLLLGQARGAAICGLVAGGLPVAEYTALQLKQAVVGYGRATKA 119
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
Q+ M+ L+ S G DAADAL +A+CHA+ N+
Sbjct: 120 QMQEMVTRLLNLSGQPGSDAADALGMAICHAHGGNT 155
>gi|167623850|ref|YP_001674144.1| Holliday junction resolvase [Shewanella halifaxensis HAW-EB4]
gi|189046080|sp|B0TSA5|RUVC_SHEHH RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|167353872|gb|ABZ76485.1| crossover junction endodeoxyribonuclease RuvC [Shewanella
halifaxensis HAW-EB4]
Length = 173
Score = 175 bits (445), Expect = 1e-42, Method: Composition-based stats.
Identities = 64/163 (39%), Positives = 102/163 (62%), Gaps = 2/163 (1%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+G+DPG R TG+G+++ G +V SG I + + L RL Q+++GL+++I+ ++P
Sbjct: 3 IILGVDPGSRITGYGVINCVGRQQIYVGSGCIRTSSDE-LPIRLKQIFDGLSEIIRQYQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+E A+E+VF+ K+A + LKLGQAR AI++ A +PV+EY+ IK AV+G G K Q
Sbjct: 62 DEFAIERVFMAKNADSALKLGQARGAAIVAATAANLPVAEYSATQIKSAVVGTGRAQKAQ 121
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
+ M++ L+ DAADAL +AVCH + S + +
Sbjct: 122 VQHMIQQLLKLPSAPQADAADALGVAVCHYHTCQS-LAALGGR 163
>gi|319943010|ref|ZP_08017293.1| crossover junction endoribonuclease subunit C [Lautropia mirabilis
ATCC 51599]
gi|319743552|gb|EFV95956.1| crossover junction endoribonuclease subunit C [Lautropia mirabilis
ATCC 51599]
Length = 170
Score = 175 bits (445), Expect = 1e-42, Method: Composition-based stats.
Identities = 69/162 (42%), Positives = 98/162 (60%), Gaps = 2/162 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPGLR TG+G++D GD + +V+SG I S Q L RL +L++G+ +++K +R
Sbjct: 1 MRILGIDPGLRTTGFGLIDTRGDAMRYVASGVIRSGEGQ-LPERLGRLHQGIIELVKEYR 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P A E VFVN + +TL LGQAR AI + +PV EY IK+AV+G G K+
Sbjct: 60 PTVAVCEIVFVNVNPKSTLLLGQARGAAIGAMVSTGLPVHEYTALQIKQAVVGYGRATKE 119
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
Q+ M+K ++ DAADALA A+CH H +
Sbjct: 120 QVQEMVKRILTLPGLPSTDAADALACAICH-NHGGPVIGSLG 160
>gi|319639478|ref|ZP_07994227.1| crossover junction endodeoxyribonuclease ruvC [Neisseria mucosa
C102]
gi|317399244|gb|EFV79916.1| crossover junction endodeoxyribonuclease ruvC [Neisseria mucosa
C102]
Length = 181
Score = 175 bits (445), Expect = 1e-42, Method: Composition-based stats.
Identities = 62/164 (37%), Positives = 99/164 (60%)
Query: 2 RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
+ RI+GIDPG R TG+G++D G +V+SG I + SL+ R+ + + ++I+
Sbjct: 4 SQPTRILGIDPGSRVTGFGVIDAHGREHHYVASGCIKTPTGASLSERIAVIVRHIDEIIR 63
Query: 62 NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
+++P +AA+EQVFVN + ATL LGQAR AI + + +PV EY +K+AV+G G
Sbjct: 64 HYQPHQAAIEQVFVNVNPAATLMLGQARGAAIAALVMHGLPVFEYTALQVKQAVVGKGKA 123
Query: 122 DKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
K+Q+ M+ ++ S DAAD LA+A+ HA + ++
Sbjct: 124 AKEQVQHMVVQMLALSGTPQADAADGLAVALTHALRNHGLASQL 167
>gi|312877192|ref|ZP_07737161.1| crossover junction endodeoxyribonuclease RuvC [Caldicellulosiruptor
lactoaceticus 6A]
gi|311796001|gb|EFR12361.1| crossover junction endodeoxyribonuclease RuvC [Caldicellulosiruptor
lactoaceticus 6A]
Length = 164
Score = 175 bits (445), Expect = 1e-42, Method: Composition-based stats.
Identities = 54/159 (33%), Positives = 88/159 (55%), Gaps = 2/159 (1%)
Query: 8 IGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
+GIDPG+ TG+GIV+ G + G I + + R LY L +I ++P+
Sbjct: 2 LGIDPGIALTGYGIVESKNGSEFKVIDYGRIETLSSLKKSMRFLHLYTELCSIISLYQPD 61
Query: 67 EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
A+E++F NK++ + +G+AR + IL+ + + EY P +K+++ G G DK QI
Sbjct: 62 VVAIEELFFNKNSKTAITIGEARGVIILTCIQNNLSIYEYTPLQVKQSITGYGRADKTQI 121
Query: 127 HMMLKMLMPE-SFFKGKDAADALAIAVCHAYHANSGYYK 164
M+K L+ K D ADALA+A+CH ++S Y+
Sbjct: 122 QKMVKSLLSLPEIPKPDDVADALAVAMCHILSSSSVLYQ 160
>gi|254495252|ref|ZP_05108176.1| crossover junction endodeoxyribonuclease RuvC [Polaribacter sp.
MED152]
gi|85819605|gb|EAQ40762.1| crossover junction endodeoxyribonuclease RuvC [Polaribacter sp.
MED152]
Length = 184
Score = 175 bits (445), Expect = 1e-42, Method: Composition-based stats.
Identities = 53/160 (33%), Positives = 87/160 (54%), Gaps = 1/160 (0%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M I+GIDPG G+G++ + G + F+ ++ +L ++E ++I
Sbjct: 1 MATEKIILGIDPGTTIMGFGLIKIVGKKMEFIQMNELILKKYDDHYLKLKLIFERTVELI 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
+ P+E A+E F K+ + LKLG+A+ +A+ + IP++EY P IK A+ G G+
Sbjct: 61 DTYHPDEIAIEAPFFGKNVQSMLKLGRAQGVAMAAGLSREIPITEYLPKKIKMAITGNGN 120
Query: 121 GDKKQIHMMLKMLMPESF-FKGKDAADALAIAVCHAYHAN 159
K+Q+ +MLK L+ K DA D LA AVCH Y++
Sbjct: 121 ASKEQVALMLKSLLNLKTLPKNLDATDGLAAAVCHYYNSG 160
>gi|121595949|ref|YP_987845.1| Holliday junction resolvase [Acidovorax sp. JS42]
gi|166231573|sp|A1WBZ4|RUVC_ACISJ RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|120608029|gb|ABM43769.1| crossover junction endodeoxyribonuclease RuvC [Acidovorax sp. JS42]
Length = 186
Score = 175 bits (445), Expect = 1e-42, Method: Composition-based stats.
Identities = 69/168 (41%), Positives = 104/168 (61%), Gaps = 7/168 (4%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQ------SLAFRLCQLYEGLTD 58
+RI+GIDPGL+ TG+G+VDV G L +V+SGT+ + R L RL L++G+++
Sbjct: 1 MRILGIDPGLQTTGFGVVDVDGHRLRYVASGTVRTTGRATGLALGDLPGRLKVLFDGVSE 60
Query: 59 VIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGV 118
V ++P AAVE +FVN + +TL LGQAR A+ + A +PV+EY +KKAV+G
Sbjct: 61 VAARYQPSTAAVEIIFVNVNPQSTLLLGQARGAALTALVNANLPVAEYTALQMKKAVVGH 120
Query: 119 GHGDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
G K Q+ M++ L+ G DAADAL +A+ HA+ A + ++
Sbjct: 121 GRAAKSQVQEMVRRLLELPGLPGTDAADALGLAITHAH-AGAAMARVG 167
>gi|327402181|ref|YP_004343019.1| Crossover junction endodeoxyribonuclease ruvC [Fluviicola taffensis
DSM 16823]
gi|327317689|gb|AEA42181.1| Crossover junction endodeoxyribonuclease ruvC [Fluviicola taffensis
DSM 16823]
Length = 185
Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats.
Identities = 52/162 (32%), Positives = 90/162 (55%), Gaps = 1/162 (0%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M + I+GIDPG G+G++ + G + ++ G I + +L ++++ + ++
Sbjct: 1 MAEDKIILGIDPGTTVLGYGLIHIKGTKIEMLNFGIIQLNKLDNQPDKLKRIFDRIDGLM 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
+ ++P+E A+E F K+ + LKLG+A+ +AI + IP EY P IK+A+ G G+
Sbjct: 61 EEYKPDEMAIEAPFFGKNVQSMLKLGRAQGVAIAASLRRNIPYEEYTPKRIKQAITGNGN 120
Query: 121 GDKKQIHMMLKMLMP-ESFFKGKDAADALAIAVCHAYHANSG 161
K+Q+ ML+ L+ + K DA D LA AVCH + G
Sbjct: 121 ASKEQVAAMLQTLLKFDEIPKYLDATDGLAAAVCHHFSKGIG 162
>gi|209517512|ref|ZP_03266352.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia sp.
H160]
gi|295677646|ref|YP_003606170.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia sp.
CCGE1002]
gi|209502045|gb|EEA02061.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia sp.
H160]
gi|295437489|gb|ADG16659.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia sp.
CCGE1002]
Length = 180
Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats.
Identities = 65/163 (39%), Positives = 100/163 (61%), Gaps = 2/163 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPGLR TG+G+++ G L +V+SG I + L RL ++ G++ +I+
Sbjct: 1 MRILGIDPGLRVTGFGVIEQHGHTLRYVASGVIRT-ADADLPSRLGTIFAGISTLIREHA 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P++AA+E+VFVN + +TL LGQAR AI +PV+EY +K++V+G G K+
Sbjct: 60 PDQAAIEKVFVNVNPQSTLLLGQARGAAICGLVAGGVPVAEYTALQLKQSVVGYGRATKE 119
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
Q+ M+ L+ S G DAADAL +A+CHA+ S +
Sbjct: 120 QMQQMVVRLLSLSGVPGTDAADALGMAICHAH-GGSTLSTLGG 161
>gi|313114600|ref|ZP_07800108.1| crossover junction endodeoxyribonuclease RuvC [Faecalibacterium cf.
prausnitzii KLE1255]
gi|310623064|gb|EFQ06511.1| crossover junction endodeoxyribonuclease RuvC [Faecalibacterium cf.
prausnitzii KLE1255]
Length = 170
Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats.
Identities = 54/161 (33%), Positives = 89/161 (55%), Gaps = 1/161 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+R++GIDPG GWG+VD AG+ V G + + RL ++Y G+ +VI+ R
Sbjct: 1 MRVLGIDPGYAIVGWGVVDYAGNRFAPVDFGAVCTDAGVPFERRLDEVYAGIKEVIERTR 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
PE A+E++F + + + +AR + +L+ A A +P+ EY P +K+AV G G KK
Sbjct: 61 PEVLAIEKLFYQHNQTTVIGVAEARGVILLAAAQAGLPIYEYTPMQVKQAVTGYGKAVKK 120
Query: 125 QIHMMLKMLMPESF-FKGKDAADALAIAVCHAYHANSGYYK 164
Q+ M ++L+ K D ADALA+A+ + + +
Sbjct: 121 QVQEMTRVLLHLPAVPKPDDTADALAMAITFCHTNGNQLNR 161
>gi|121609894|ref|YP_997701.1| Holliday junction resolvase [Verminephrobacter eiseniae EF01-2]
gi|166233309|sp|A1WM26|RUVC_VEREI RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|121554534|gb|ABM58683.1| crossover junction endodeoxyribonuclease RuvC [Verminephrobacter
eiseniae EF01-2]
Length = 182
Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats.
Identities = 66/166 (39%), Positives = 101/166 (60%), Gaps = 3/166 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQ--SLAFRLCQLYEGLTDVIKN 62
+RI+GIDPGL+ TG+G+VD+ G L +V+SGTI + L RL L++G+T++
Sbjct: 1 MRILGIDPGLQTTGFGVVDIDGQQLRYVASGTIRTTSLALGDLPGRLKILFDGITELAAR 60
Query: 63 WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
++P+ AAVE VFVN + +TL LGQAR I + + +PV+EY +KKAV+G G
Sbjct: 61 YQPDAAAVEIVFVNVNPQSTLLLGQARGACITALVASHLPVAEYTALQMKKAVVGHGRAA 120
Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
K Q+ M++ L+ G DAAD L +A+ HA+ ++ +
Sbjct: 121 KSQVQEMVRRLLHLPALPGTDAADGLGLAITHAH-VGPAMGRLGAA 165
>gi|110638579|ref|YP_678789.1| Holliday junction resolvase [Cytophaga hutchinsonii ATCC 33406]
gi|123058720|sp|Q11T17|RUVC_CYTH3 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|110281260|gb|ABG59446.1| crossover junction endodeoxyribonuclease (Holliday junction
nuclease) [Cytophaga hutchinsonii ATCC 33406]
Length = 200
Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats.
Identities = 53/155 (34%), Positives = 89/155 (57%), Gaps = 1/155 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+G+DPG G+G++ + G L + G I A +L +++E ++ +I+ + P
Sbjct: 13 IILGVDPGTNVMGYGLIAIKGTQLTLIQFGVIHLSKYTDHAIKLSKIFERISLLIEEYHP 72
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+E A+E F + + LKLG+A+ +AI + ++P+ EYAP IK++V G G+ K+Q
Sbjct: 73 DEMAIEAPFFGSNVQSMLKLGRAQGVAIAAAISKQVPIFEYAPKKIKQSVTGSGNASKEQ 132
Query: 126 IHMML-KMLMPESFFKGKDAADALAIAVCHAYHAN 159
+ ML K+L + K DA DAL +AVCH +
Sbjct: 133 VAAMLSKILFFQEIPKLLDATDALGVAVCHYFQKG 167
>gi|170732010|ref|YP_001763957.1| Holliday junction resolvase [Burkholderia cenocepacia MC0-3]
gi|238688562|sp|B1JVV5|RUVC_BURCC RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|169815252|gb|ACA89835.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia
cenocepacia MC0-3]
Length = 180
Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats.
Identities = 68/156 (43%), Positives = 104/156 (66%), Gaps = 1/156 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPGLR TG+G++DV+G L +V+SG I + LA RL +++G++ ++++
Sbjct: 1 MRILGIDPGLRVTGFGVIDVSGHRLAYVTSGVIRTPT-ADLATRLGTIFQGVSTIVRDHA 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P++AA+E+VFVN + +TL LGQAR AI +PV+EY +K+AV+G G K
Sbjct: 60 PDQAAIEKVFVNVNPQSTLLLGQARGAAICGLVAGGLPVAEYTALQLKQAVVGYGRATKT 119
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
Q+ M+ L+ S G DAADAL +A+CHA+ N+
Sbjct: 120 QMQDMVTRLLNLSGQPGSDAADALGMAICHAHGGNT 155
>gi|88811438|ref|ZP_01126693.1| Crossover junction endodeoxyribonuclease RuvC [Nitrococcus mobilis
Nb-231]
gi|88791327|gb|EAR22439.1| Crossover junction endodeoxyribonuclease RuvC [Nitrococcus mobilis
Nb-231]
Length = 173
Score = 175 bits (443), Expect = 2e-42, Method: Composition-based stats.
Identities = 71/165 (43%), Positives = 97/165 (58%), Gaps = 1/165 (0%)
Query: 2 RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
RI+GIDPGLR TG+G++ V G L +V SG I L RL L+E L V+
Sbjct: 5 SSPRRILGIDPGLRITGYGVITVNGSRLAYVGSGIIR-IPDGPLPERLNILFEQLAHVLA 63
Query: 62 NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
+ P AAVEQVFV+++ + LKLG AR AI + A A + V+EY P IK+A++G G+
Sbjct: 64 QYEPVTAAVEQVFVHRNPSSALKLGHARGAAICACAQAGLTVAEYTPRRIKQALVGTGNA 123
Query: 122 DKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
DK+Q+ M++ L+ DAADALA AVCHA+ +
Sbjct: 124 DKQQVQYMVQSLLGLRGNLRVDAADALATAVCHAHGQRFDCARAG 168
>gi|83590538|ref|YP_430547.1| crossover junction endodeoxyribonuclease RuvC [Moorella
thermoacetica ATCC 39073]
gi|123766740|sp|Q2RHT5|RUVC_MOOTA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|83573452|gb|ABC20004.1| crossover junction endodeoxyribonuclease RuvC [Moorella
thermoacetica ATCC 39073]
Length = 167
Score = 175 bits (443), Expect = 2e-42, Method: Composition-based stats.
Identities = 55/152 (36%), Positives = 88/152 (57%), Gaps = 1/152 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ I+GIDPG G+G+V+ + I + + RL +Y G+ ++I+ +
Sbjct: 1 MLILGIDPGTAIVGYGLVEARAGQTRALVYDCIRTPAGEDPCRRLATIYAGIRELIERLQ 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
PE AVE++F NK++ L +GQAR + +L+ A +PV+EY P +K+AV G G K+
Sbjct: 61 PETMAVEELFFNKNSKTALAVGQARGVILLAAAHTGLPVAEYTPLEVKQAVAGFGRAPKE 120
Query: 125 QIHMMLKMLMPESF-FKGKDAADALAIAVCHA 155
Q+ M++ L+ + D ADALA+AVCHA
Sbjct: 121 QVQRMVQALLGLEEKPRPDDVADALAVAVCHA 152
>gi|149191829|ref|ZP_01870066.1| Holliday junction resolvase [Vibrio shilonii AK1]
gi|148834347|gb|EDL51347.1| Holliday junction resolvase [Vibrio shilonii AK1]
Length = 173
Score = 175 bits (443), Expect = 2e-42, Method: Composition-based stats.
Identities = 65/163 (39%), Positives = 99/163 (60%), Gaps = 2/163 (1%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G +L ++ SG I + L RL Q+Y G++++I ++P
Sbjct: 3 IILGIDPGSRITGYGVIRQQGRHLQYLGSGCIRTS-EAELPGRLKQIYAGVSEIITQFQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQVF+ K+A + LKLGQAR AI++ +PV EYA IK+AV+G G DK Q
Sbjct: 62 DVFAIEQVFMAKNADSALKLGQARGSAIVAAVNNDLPVYEYAARLIKQAVVGTGGADKAQ 121
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
+ M+ ++ DAADAL +A+CHA + +A +
Sbjct: 122 VQHMVMAMLKLPSKPQADAADALGVAICHANTNKT-LVALAGK 163
>gi|332884766|gb|EGK05022.1| crossover junction endodeoxyribonuclease ruvC [Dysgonomonas mossii
DSM 22836]
Length = 186
Score = 175 bits (443), Expect = 3e-42, Method: Composition-based stats.
Identities = 51/163 (31%), Positives = 86/163 (52%), Gaps = 3/163 (1%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
++K I+GIDPG + G+GI+ V + ++ G + +L +++E + +I
Sbjct: 2 IQKERIILGIDPGTQVMGYGILRVVNNKPELLAMGVLQLSKYDDHYLKLRRIFERIIGLI 61
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
+ P+E A+E F K+ + LKLG+A+ +A+ + IP+ EYAP IK ++ G G
Sbjct: 62 DEFLPDELAIEAPFFGKNVQSMLKLGRAQGVAMAAALSRDIPIFEYAPLKIKMSITGNGR 121
Query: 121 GDKKQIHMMLKMLMPESF---FKGKDAADALAIAVCHAYHANS 160
K+Q+ ML+ + DA D LA AVCH + N+
Sbjct: 122 AAKEQVAYMLQHFLHIPDSNMPTQMDATDGLAAAVCHYFQTNN 164
>gi|150024319|ref|YP_001295145.1| Holliday junction resolvase [Flavobacterium psychrophilum JIP02/86]
gi|149770860|emb|CAL42325.1| Crossover junction endoribonuclease [Flavobacterium psychrophilum
JIP02/86]
Length = 184
Score = 175 bits (443), Expect = 3e-42, Method: Composition-based stats.
Identities = 49/160 (30%), Positives = 85/160 (53%), Gaps = 1/160 (0%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M I+GIDPG G+G++ + + F+ ++ + +L ++E ++I
Sbjct: 1 MANERIILGIDPGTTIMGFGLIKIINKKMEFLQLNELILSKYDNHYQKLKVIFERTIELI 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
P+E A+E F K+ + LKLG+A+ +A+ + IP++EY P IK A+ G G+
Sbjct: 61 DTHNPDEIAIEAPFFGKNVQSMLKLGRAQGVAMAAGLSRDIPITEYEPKKIKMAITGNGN 120
Query: 121 GDKKQIHMMLKMLMPESF-FKGKDAADALAIAVCHAYHAN 159
K+Q+ ML+ L+ K D+ D LA AVCH +++
Sbjct: 121 ASKEQVAKMLQQLLGLKELPKNLDSTDGLAAAVCHFFNSG 160
>gi|146299137|ref|YP_001193728.1| Holliday junction resolvase [Flavobacterium johnsoniae UW101]
gi|146153555|gb|ABQ04409.1| crossover junction endodeoxyribonuclease RuvC [Flavobacterium
johnsoniae UW101]
Length = 184
Score = 175 bits (443), Expect = 3e-42, Method: Composition-based stats.
Identities = 50/160 (31%), Positives = 86/160 (53%), Gaps = 1/160 (0%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M + I+GIDPG G+G++ V + F+ + + +L ++E ++I
Sbjct: 1 MTQERIILGIDPGTTIMGFGLIKVINKKMEFLQLNELQLSKYDNHYQKLRIIFERTIELI 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
+ P+E A+E F K+ + LKLG+A+ +A+ + IP++EY P IK A+ G G+
Sbjct: 61 ETHCPDEIAIEAPFFGKNVQSMLKLGRAQGVAMAAGLSRGIPITEYEPKKIKMAITGNGN 120
Query: 121 GDKKQIHMMLKMLMPESF-FKGKDAADALAIAVCHAYHAN 159
K+Q+ ML+ L+ K D+ D LA AVCH +++
Sbjct: 121 ASKEQVAKMLQQLLGLKELPKNLDSTDGLAAAVCHFFNSG 160
>gi|326315582|ref|YP_004233254.1| crossover junction endodeoxyribonuclease RuvC [Acidovorax avenae
subsp. avenae ATCC 19860]
gi|323372418|gb|ADX44687.1| crossover junction endodeoxyribonuclease RuvC [Acidovorax avenae
subsp. avenae ATCC 19860]
Length = 182
Score = 175 bits (443), Expect = 3e-42, Method: Composition-based stats.
Identities = 69/166 (41%), Positives = 105/166 (63%), Gaps = 3/166 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQ--SLAFRLCQLYEGLTDVIKN 62
+RI+GIDPGL+ TG+G+VDV G +L +V+SGTI + L RL L++G+T+V
Sbjct: 1 MRILGIDPGLQTTGFGVVDVDGHHLSYVASGTIRTTGAALGDLPGRLKILFDGITEVAAR 60
Query: 63 WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
++P+ A VE VFVN + +TL LGQAR + + +++PV+EY +KKAV+G G
Sbjct: 61 YQPDAATVEIVFVNVNPQSTLLLGQARGACVTALVASQLPVAEYTALQMKKAVVGHGRAA 120
Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
K Q+ M++ L+ G DAADAL +A+ HA+ A + ++A
Sbjct: 121 KSQVQEMVRRLLQLPGLPGSDAADALGLAITHAH-AGAAMGRLAEA 165
>gi|319764354|ref|YP_004128291.1| crossover junction endodeoxyribonuclease ruvc [Alicycliphilus
denitrificans BC]
gi|330826348|ref|YP_004389651.1| crossover junction endodeoxyribonuclease RuvC [Alicycliphilus
denitrificans K601]
gi|317118915|gb|ADV01404.1| crossover junction endodeoxyribonuclease RuvC [Alicycliphilus
denitrificans BC]
gi|329311720|gb|AEB86135.1| crossover junction endodeoxyribonuclease RuvC [Alicycliphilus
denitrificans K601]
Length = 182
Score = 174 bits (442), Expect = 3e-42, Method: Composition-based stats.
Identities = 72/165 (43%), Positives = 105/165 (63%), Gaps = 3/165 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSC--VRQSLAFRLCQLYEGLTDVIKN 62
+RI+GIDPGL+ TG+G+VDV G L +V+SGTI + L RL L++G+T+V
Sbjct: 1 MRILGIDPGLQTTGFGVVDVDGQRLAYVASGTIRTTGLALGDLPGRLKLLFDGITEVAAR 60
Query: 63 WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
+RP+ AAVE VFVN + +TL LGQAR A+ + A +PV+EY +KKAV+G G
Sbjct: 61 YRPDAAAVEIVFVNVNPQSTLLLGQARGAALTALVNADLPVAEYTALQMKKAVVGHGRAA 120
Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
K Q+ M++ L+ G DAADAL +A+ HA+ A + ++ +
Sbjct: 121 KSQVQEMVRRLLALPGLPGTDAADALGLAITHAH-AGAAMARVGA 164
>gi|149910566|ref|ZP_01899205.1| Holliday junction resolvase [Moritella sp. PE36]
gi|149806409|gb|EDM66382.1| Holliday junction resolvase [Moritella sp. PE36]
Length = 173
Score = 174 bits (442), Expect = 3e-42, Method: Composition-based stats.
Identities = 60/163 (36%), Positives = 95/163 (58%), Gaps = 2/163 (1%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ ++ SG I + +L RL Q++ G+ ++I ++P
Sbjct: 3 IILGIDPGSRITGYGVIQHIHGKFQYLGSGCIRTS-GDTLPERLKQIHAGVCEIIIQFQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
++ A+E VF+ K+A + LKLGQAR AI++ + V EY IK+AV+G G DK+Q
Sbjct: 62 DKFAIEDVFMGKNAASALKLGQARGAAIVAAVSNDLEVGEYTARQIKQAVVGNGGADKEQ 121
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
+ M+ L+ DAAD LA+A+CHA + +A +
Sbjct: 122 VQQMVVNLLKLPGTPQADAADGLAVALCHAQSLRT-LINMAGK 163
>gi|120434443|ref|YP_860149.1| Holliday junction resolvase [Gramella forsetii KT0803]
gi|187611414|sp|A0LXG7|RUVC_GRAFK RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|117576593|emb|CAL65062.1| crossover junction endodeoxyribonuclease RuvC [Gramella forsetii
KT0803]
Length = 192
Score = 174 bits (442), Expect = 3e-42, Method: Composition-based stats.
Identities = 50/160 (31%), Positives = 86/160 (53%), Gaps = 1/160 (0%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
++ I+GIDPG G+G++ V + F+ + + +L ++E ++I
Sbjct: 10 LKSERIILGIDPGTTIMGFGLIKVENKKMSFIQMNELQLSKYKDHYVKLKLIFERTIELI 69
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
N+ P+E A+E F K+ + LKLG+A+ +A+ + +P++EY P IK A+ G G+
Sbjct: 70 DNYHPDEIAIEAPFFGKNVQSMLKLGRAQGVAMAAGLSREVPITEYLPKKIKMAITGNGN 129
Query: 121 GDKKQIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHAN 159
K+Q+ ML+ + K DA D LA AVCH Y++
Sbjct: 130 ASKEQVARMLQSQLNIGKLPKNLDATDGLAAAVCHFYNSG 169
>gi|319778456|ref|YP_004129369.1| Crossover junction endodeoxyribonuclease RuvC [Taylorella
equigenitalis MCE9]
gi|317108480|gb|ADU91226.1| Crossover junction endodeoxyribonuclease RuvC [Taylorella
equigenitalis MCE9]
Length = 182
Score = 174 bits (442), Expect = 3e-42, Method: Composition-based stats.
Identities = 62/154 (40%), Positives = 94/154 (61%), Gaps = 1/154 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+RI+GIDPGLR TG+G+++ L +V+SGTI L RL + EG+ +VI+++
Sbjct: 1 MRIVGIDPGLRFTGYGVIEASQNGQLQYVASGTIAIPTDLPLYKRLVHIMEGVQEVIEHF 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
P+ + +E+V VNK+ TL LGQAR A+++ A + V EY IKK+V G K
Sbjct: 61 NPKTSCIEEVVVNKNGKTTLLLGQARGAALVTLANLGLEVFEYPALQIKKSVSSNGRAPK 120
Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYH 157
+Q+ M+K ++ + DAADALA A+ HA+
Sbjct: 121 EQVRQMVKYILNLNNMPSSDAADALACAITHAHM 154
>gi|146328711|ref|YP_001210062.1| crossover junction endodeoxyribonuclease RuvC [Dichelobacter
nodosus VCS1703A]
gi|187611413|sp|A5EXG1|RUVC_DICNV RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|146232181|gb|ABQ13159.1| crossover junction endodeoxyribonuclease RuvC [Dichelobacter
nodosus VCS1703A]
Length = 176
Score = 174 bits (442), Expect = 3e-42, Method: Composition-based stats.
Identities = 65/155 (41%), Positives = 104/155 (67%), Gaps = 1/155 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
RI+GIDPG R TG+GI+DV G + +V SG I Q + RL +++G+ ++++ + P
Sbjct: 5 RILGIDPGSRITGYGIIDVRGTAIDYVDSGCIRL-ATQLMPQRLMTIHQGIFELVQQYHP 63
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
++ A+E +FV+K+ + LKLGQAR +AI + L+ + ++EYA +IK+AV+G G DK Q
Sbjct: 64 QQFAIEAIFVHKNPNSALKLGQARGVAICAAVLSGLSINEYAAKSIKQAVVGKGGADKIQ 123
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
+ M+K+L+ DAADALA+A+ HA+H +
Sbjct: 124 VQHMVKILLNRQGAIQSDAADALAVAITHAHHLQT 158
>gi|298207569|ref|YP_003715748.1| Holliday junction resolvase [Croceibacter atlanticus HTCC2559]
gi|83850205|gb|EAP88073.1| Holliday junction resolvase [Croceibacter atlanticus HTCC2559]
Length = 184
Score = 174 bits (442), Expect = 3e-42, Method: Composition-based stats.
Identities = 50/160 (31%), Positives = 83/160 (51%), Gaps = 1/160 (0%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M K I+GIDPG G+G++ V + + + +L ++E ++I
Sbjct: 1 MSKERIILGIDPGTTIMGFGVIKVVNKKMECLQLNELQLKKYTDPYIKLKLIFERTIELI 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
+ P+E A+E F K+ + LKLG+A+ +A+ + +PV+EY P IK A+ G G+
Sbjct: 61 DTFNPDEIAIEAPFFGKNVQSMLKLGRAQGVAMAAGLSREVPVTEYLPKKIKMAITGNGN 120
Query: 121 GDKKQIHMMLKMLMPESF-FKGKDAADALAIAVCHAYHAN 159
K+Q+ ML+ ++ K D+ D LA AVCH Y+
Sbjct: 121 ASKEQVAKMLQSVLKLKTLPKNLDSTDGLAAAVCHFYNTG 160
>gi|254253223|ref|ZP_04946541.1| Holliday junction resolvasome endonuclease subunit [Burkholderia
dolosa AUO158]
gi|124895832|gb|EAY69712.1| Holliday junction resolvasome endonuclease subunit [Burkholderia
dolosa AUO158]
Length = 180
Score = 174 bits (441), Expect = 4e-42, Method: Composition-based stats.
Identities = 68/156 (43%), Positives = 102/156 (65%), Gaps = 1/156 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPGLR TG+G++DV+G L +V+SG I + LA RL ++ G++ +++
Sbjct: 1 MRILGIDPGLRVTGFGVIDVSGHRLAYVTSGVIRTPT-ADLATRLGTIFHGVSTLVREHA 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P++AA+E+VFVN + +TL LGQAR AI +PV+EY +K+AV+G G K
Sbjct: 60 PDQAAIEKVFVNVNPQSTLLLGQARGAAICGLVAGGLPVAEYTALQLKQAVVGYGRATKT 119
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
Q+ M+ L+ S G DAADAL +A+CHA+ N+
Sbjct: 120 QMQEMVTRLLNLSGQPGTDAADALGMAICHAHGGNT 155
>gi|167586149|ref|ZP_02378537.1| Holliday junction resolvase [Burkholderia ubonensis Bu]
Length = 180
Score = 174 bits (441), Expect = 5e-42, Method: Composition-based stats.
Identities = 67/152 (44%), Positives = 101/152 (66%), Gaps = 1/152 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPGLR TG+G++DV+G L +V+SG I + LA RL +++G++ +++
Sbjct: 1 MRILGIDPGLRVTGFGVIDVSGHRLAYVTSGVIRTPT-ADLATRLGTIFQGVSTLVREHA 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P++AA+E+VFVN + +TL LGQAR AI +PV+EY +K+AV+G G K
Sbjct: 60 PDQAAIEKVFVNVNPQSTLLLGQARGAAICGLVTGGLPVAEYTALQLKQAVVGYGRATKA 119
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
Q+ M+ L+ S G DAADAL +A+CHA+
Sbjct: 120 QMQEMVTRLLNLSGQPGTDAADALGMAICHAH 151
>gi|317131998|ref|YP_004091312.1| crossover junction endodeoxyribonuclease RuvC [Ethanoligenens
harbinense YUAN-3]
gi|315469977|gb|ADU26581.1| crossover junction endodeoxyribonuclease RuvC [Ethanoligenens
harbinense YUAN-3]
Length = 167
Score = 174 bits (441), Expect = 5e-42, Method: Composition-based stats.
Identities = 54/162 (33%), Positives = 90/162 (55%), Gaps = 1/162 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ ++GIDPG G+G V A + + G I + RL Q+Y+G+ ++ + R
Sbjct: 1 MVVLGIDPGYAIIGYGAVRYAQNRYTVLEYGAIRTEANTPFPARLAQIYDGMRELFRVCR 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ AVE++F N + + + +AR + +L+ A + V+EY P+ +K+AV+G G +K
Sbjct: 61 PDAVAVEELFFNTNTTTGIAVAEARGVILLAAEQAGVRVAEYTPSQVKQAVVGYGRAEKA 120
Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHANSGYYKI 165
Q+ + +ML+ K D ADALAIA+CHA A S +
Sbjct: 121 QVMELTRMLLGLREVPKPDDTADALAIAICHANSAGSRLGAL 162
>gi|221065148|ref|ZP_03541253.1| crossover junction endodeoxyribonuclease RuvC [Comamonas
testosteroni KF-1]
gi|220710171|gb|EED65539.1| crossover junction endodeoxyribonuclease RuvC [Comamonas
testosteroni KF-1]
Length = 182
Score = 174 bits (441), Expect = 5e-42, Method: Composition-based stats.
Identities = 68/151 (45%), Positives = 96/151 (63%), Gaps = 2/151 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQ--SLAFRLCQLYEGLTDVIKN 62
+RI+GIDPGL+ TG+G++D+ G L +V+SGTI + + L RL L++G+++V
Sbjct: 1 MRILGIDPGLQTTGFGVIDMDGQRLSYVASGTIRTNKMELGDLPGRLKVLFDGISEVASR 60
Query: 63 WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
++PE AAVE VFVN + +TL LGQAR A+ + A + VSEY +KKAV G G
Sbjct: 61 YQPEVAAVEIVFVNVNPQSTLLLGQARGAALTALVNANLAVSEYTALQMKKAVTGHGRAA 120
Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAIAVC 153
K QI M+K L+ G DAADAL +A+
Sbjct: 121 KNQIQEMVKRLLQLPGLPGTDAADALGLAIT 151
>gi|150010366|ref|YP_001305109.1| Holliday junction resolvase [Parabacteroides distasonis ATCC 8503]
gi|298374762|ref|ZP_06984720.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides sp.
3_1_19]
gi|149938790|gb|ABR45487.1| crossover junction endodeoxyribonuclease RuvC [Parabacteroides
distasonis ATCC 8503]
gi|298269130|gb|EFI10785.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides sp.
3_1_19]
Length = 185
Score = 173 bits (440), Expect = 5e-42, Method: Composition-based stats.
Identities = 54/163 (33%), Positives = 88/163 (53%), Gaps = 3/163 (1%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M K I+GIDPG G+GI+ + G+ + G + + RL +++E + +I
Sbjct: 1 MIKDRIILGIDPGTIVMGYGILKIEGNKPKLEAMGILQLNKYEDHYLRLRKIFERVLALI 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
+ P+E A+E F K+ + LKLG+A+ +A+ + +P+ EYAP IK ++ G G+
Sbjct: 61 DQYHPDELAIEAPFFGKNVQSMLKLGRAQGVAMAAALERDVPIFEYAPLKIKLSITGNGN 120
Query: 121 GDKKQIHMMLKMLMP---ESFFKGKDAADALAIAVCHAYHANS 160
K+Q+ ML+ + ES DA D LA AVCH + N+
Sbjct: 121 AAKEQVAGMLQRYLKIPDESMLPQLDATDGLAAAVCHYFQTNN 163
>gi|255658186|ref|ZP_05403595.1| crossover junction endodeoxyribonuclease RuvC [Mitsuokella
multacida DSM 20544]
gi|260849494|gb|EEX69501.1| crossover junction endodeoxyribonuclease RuvC [Mitsuokella
multacida DSM 20544]
Length = 164
Score = 173 bits (440), Expect = 5e-42, Method: Composition-based stats.
Identities = 54/161 (33%), Positives = 89/161 (55%), Gaps = 1/161 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ +GIDPG G+G V+ G L + G+I + + + RL ++Y+ L +IK ++
Sbjct: 1 MLALGIDPGTAICGFGFVESRGSRLIPRAYGSIFTSPKMKMEDRLMKIYDELDALIKKYK 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ VE++F N++ + +GQAR I +L+ A + + E P IK+ V G G DKK
Sbjct: 61 PDVMGVEKLFFNRNVTTAIPVGQARGIVLLTAAKNGLRLVERTPMQIKQDVTGYGKADKK 120
Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHANSGYYK 164
Q+ M+ ++ K D ADALAIA+C + NS ++
Sbjct: 121 QVIYMVTKILNLPEPPKPDDTADALAIAICTTHCLNSISWR 161
>gi|332828729|gb|EGK01421.1| crossover junction endodeoxyribonuclease ruvC [Dysgonomonas gadei
ATCC BAA-286]
Length = 187
Score = 173 bits (440), Expect = 6e-42, Method: Composition-based stats.
Identities = 51/163 (31%), Positives = 85/163 (52%), Gaps = 3/163 (1%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
+ K I+GIDPG + G+GI+ V + ++ G + +L +++E + +I
Sbjct: 2 IEKERIILGIDPGTQVMGYGILRVVNNKPEMLAMGILQLSKYDDHYLKLRRIFERIISLI 61
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
+ P+E A+E F K+ + LKLG+A+ +A+ + IP+ EYAP IK ++ G G
Sbjct: 62 DEFLPDELAIEAPFFGKNVQSMLKLGRAQGVAMAAALSRDIPIFEYAPLKIKMSITGNGR 121
Query: 121 GDKKQIHMMLKMLMPESF---FKGKDAADALAIAVCHAYHANS 160
K+Q+ ML+ + DA D LA AVCH + N+
Sbjct: 122 AAKEQVAYMLQNFLKIPDENMLPQMDATDGLAAAVCHFFQTNN 164
>gi|255012370|ref|ZP_05284496.1| Holliday junction resolvase [Bacteroides sp. 2_1_7]
gi|256839216|ref|ZP_05544726.1| crossover junction endodeoxyribonuclease RuvC [Parabacteroides sp.
D13]
gi|262382336|ref|ZP_06075473.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides sp.
2_1_33B]
gi|301308455|ref|ZP_07214409.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides sp.
20_3]
gi|256740135|gb|EEU53459.1| crossover junction endodeoxyribonuclease RuvC [Parabacteroides sp.
D13]
gi|262295214|gb|EEY83145.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides sp.
2_1_33B]
gi|300833925|gb|EFK64541.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides sp.
20_3]
Length = 185
Score = 173 bits (440), Expect = 6e-42, Method: Composition-based stats.
Identities = 55/163 (33%), Positives = 88/163 (53%), Gaps = 3/163 (1%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M K I+GIDPG G+GI+ + G+ + G + + RL +++E + +I
Sbjct: 1 MIKDRIILGIDPGTIVMGYGILKIEGNKPKLEAMGILQLNKYEDHYLRLRKIFERVLALI 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
+ P+E A+E F K+ + LKLG+A+ +A+ + IP+ EYAP IK ++ G G+
Sbjct: 61 DQYHPDELAIEAPFFGKNVQSMLKLGRAQGVAMAAALERDIPIFEYAPLKIKLSITGNGN 120
Query: 121 GDKKQIHMMLKMLMP---ESFFKGKDAADALAIAVCHAYHANS 160
K+Q+ ML+ + ES DA D LA AVCH + N+
Sbjct: 121 AAKEQVAGMLQRYLKIPDESMLPQLDATDGLAAAVCHYFQTNN 163
>gi|124265675|ref|YP_001019679.1| Holliday junction resolvase [Methylibium petroleiphilum PM1]
gi|187611448|sp|A2SD05|RUVC_METPP RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|124258450|gb|ABM93444.1| putative holliday junction endodeoxyribonuclease protein
[Methylibium petroleiphilum PM1]
Length = 184
Score = 173 bits (440), Expect = 6e-42, Method: Composition-based stats.
Identities = 65/153 (42%), Positives = 97/153 (63%), Gaps = 2/153 (1%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSC--VRQSLAFRLCQLYEGLTDVIKNW 63
RI+GIDPGLR TG+G+V+ G L +++SGT+ + L RL ++EG+ +V +
Sbjct: 4 RILGIDPGLRTTGFGVVECEGSRLHYIASGTVRTDALPNGDLPGRLKIIFEGVREVAARY 63
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
+P+ AAVE VFVN + +TL LGQAR A+ + + V+EY +KKA++G GH K
Sbjct: 64 QPDCAAVEIVFVNVNPQSTLLLGQARGAALAALVSGDLAVAEYTALQMKKAIVGHGHARK 123
Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
+Q+ M+ L+ +DAADAL +AVCHA+
Sbjct: 124 EQVQAMVARLLSLPGEPSRDAADALGLAVCHAH 156
>gi|228472766|ref|ZP_04057524.1| crossover junction endodeoxyribonuclease RuvC [Capnocytophaga
gingivalis ATCC 33624]
gi|228275817|gb|EEK14583.1| crossover junction endodeoxyribonuclease RuvC [Capnocytophaga
gingivalis ATCC 33624]
Length = 181
Score = 173 bits (440), Expect = 6e-42, Method: Composition-based stats.
Identities = 51/160 (31%), Positives = 90/160 (56%), Gaps = 3/160 (1%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M K I+G+DPG G+GI+ V + + FV ++ +L ++E T++I
Sbjct: 1 MEK--IILGVDPGTTVMGFGIIQVMKNQMKFVQMNELILSKYDDHYLKLKLIFERTTELI 58
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
++P+E A+E F K+ + LKLG+A+ +A+ + ++P++EY P +K A+ G G+
Sbjct: 59 DTYKPDELAIEAPFFGKNVQSMLKLGRAQGVAMAAGLARQVPITEYEPKKVKMAITGNGN 118
Query: 121 GDKKQIHMMLKMLMP-ESFFKGKDAADALAIAVCHAYHAN 159
K+Q+ ML+ L+ + DA D LA+AVCH ++
Sbjct: 119 ASKEQVAKMLQQLLHFRELPEHLDATDGLAVAVCHFFNGG 158
>gi|326336086|ref|ZP_08202258.1| crossover junction endoribonuclease subunit C [Capnocytophaga sp.
oral taxon 338 str. F0234]
gi|325691595|gb|EGD33562.1| crossover junction endoribonuclease subunit C [Capnocytophaga sp.
oral taxon 338 str. F0234]
Length = 181
Score = 173 bits (439), Expect = 7e-42, Method: Composition-based stats.
Identities = 54/160 (33%), Positives = 92/160 (57%), Gaps = 3/160 (1%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M K I+GIDPG G+GI+ V + + FV ++ + +L ++E T++I
Sbjct: 1 MEK--IILGIDPGTTVMGFGIIQVIKNQMKFVQMNELLLNKYDNHYLKLKLIFERTTELI 58
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
N++P+E A+E F K+ + LKLG+A+ +A+ + +P++EY P +K A+ G G+
Sbjct: 59 DNYKPDELAIEAPFFGKNVQSMLKLGRAQGVAMAAGLAREVPITEYEPKKVKMAITGNGN 118
Query: 121 GDKKQIHMMLKMLMP-ESFFKGKDAADALAIAVCHAYHAN 159
K+Q+ ML+ L+ + F DA D LA+AVCH ++
Sbjct: 119 ATKEQVAKMLQQLLNFKDFPSHLDATDGLAVAVCHFFNGG 158
>gi|120609527|ref|YP_969205.1| Holliday junction resolvase [Acidovorax citrulli AAC00-1]
gi|166231572|sp|A1TKE3|RUVC_ACIAC RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|120587991|gb|ABM31431.1| crossover junction endodeoxyribonuclease RuvC [Acidovorax citrulli
AAC00-1]
Length = 182
Score = 173 bits (439), Expect = 7e-42, Method: Composition-based stats.
Identities = 69/166 (41%), Positives = 104/166 (62%), Gaps = 3/166 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQ--SLAFRLCQLYEGLTDVIKN 62
+RI+GIDPGL+ TG+G+VDV G +L +V+SGTI + L RL L++G+T+V
Sbjct: 1 MRILGIDPGLQTTGFGVVDVDGHHLSYVASGTIRTTGAALGDLPGRLKILFDGITEVAAR 60
Query: 63 WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
++P+ A VE VFVN + +TL LGQAR + + +R+PV+EY +KKAV+G G
Sbjct: 61 YQPDVATVEIVFVNVNPQSTLLLGQARGACVTALVASRLPVAEYTALQMKKAVVGHGRAA 120
Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
K Q+ M++ L+ G DAADAL +A+ HA+ A + ++
Sbjct: 121 KSQVQEMVRRLLQLPGLPGTDAADALGLAITHAH-AGAAMARLGEA 165
>gi|260060745|ref|YP_003193825.1| Holliday junction resolvase [Robiginitalea biformata HTCC2501]
gi|88784875|gb|EAR16044.1| Holliday junction resolvase [Robiginitalea biformata HTCC2501]
Length = 188
Score = 173 bits (439), Expect = 7e-42, Method: Composition-based stats.
Identities = 52/155 (33%), Positives = 87/155 (56%), Gaps = 1/155 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG G+GI+ V G + FV ++ +L +++ ++I + P
Sbjct: 10 IILGIDPGTTIMGFGIIRVQGKQMEFVQMNELILRKYDDPFTKLKLIFDRTLELIDTYHP 69
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+E A+E F K+ + LKLG+A+ +A+ + ++P++EY P IK A+ G G+ K+Q
Sbjct: 70 DEIAIEAPFYGKNVQSMLKLGRAQGVAMAAGLSRQVPITEYLPKKIKMAITGNGNASKEQ 129
Query: 126 IHMMLKMLM-PESFFKGKDAADALAIAVCHAYHAN 159
+ ML+ L+ +S K D+ D LA AVCH Y+
Sbjct: 130 VARMLQSLLELKSLPKNLDSTDGLAAAVCHFYNQG 164
>gi|117923792|ref|YP_864409.1| Holliday junction endonuclease RuvC [Magnetococcus sp. MC-1]
gi|187611447|sp|A0L4W0|RUVC_MAGSM RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|117607548|gb|ABK43003.1| Holliday junction endonuclease RuvC [Magnetococcus sp. MC-1]
Length = 180
Score = 173 bits (439), Expect = 8e-42, Method: Composition-based stats.
Identities = 65/158 (41%), Positives = 94/158 (59%)
Query: 2 RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
IR+IGIDPG TGWG++D G V GTI ++ L RL Q++ L +I+
Sbjct: 4 ASPIRVIGIDPGSNVTGWGVIDGLGQRQQVVEYGTIRLDGKEPLPMRLHQIHAQLVSLIQ 63
Query: 62 NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
+P E AVE+VFV+++ + LKLG AR AI++ A +P++EY +KKAV+G G
Sbjct: 64 RLQPHEMAVEEVFVSQNVQSALKLGHARGAAIVAGAQMGLPIAEYTAMQVKKAVVGYGRA 123
Query: 122 DKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHAN 159
+K Q+ M++ML+ +DAAD LAIA+CH
Sbjct: 124 EKNQMQEMMRMLLNLDKKPAQDAADGLAIAMCHLNQRQ 161
>gi|330502218|ref|YP_004379087.1| Holliday junction resolvase [Pseudomonas mendocina NK-01]
gi|328916504|gb|AEB57335.1| Holliday junction resolvase [Pseudomonas mendocina NK-01]
Length = 174
Score = 173 bits (438), Expect = 9e-42, Method: Composition-based stats.
Identities = 67/163 (41%), Positives = 99/163 (60%), Gaps = 2/163 (1%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
I+GIDPG R TG+G+V G +V+SG I + LA RL ++ G+++VI+ P
Sbjct: 4 ILGIDPGSRITGYGVVRDTGRGCEYVASGCIRTGNG-PLAERLQIVFRGVSEVIRTHGPV 62
Query: 67 EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
+EQVF+ ++A + LKLGQAR AI++ A + VSEY +K+AV+G G DK+Q+
Sbjct: 63 TMGIEQVFMARNADSALKLGQARGAAIVAAVEAGLEVSEYTATQVKQAVVGSGAADKQQV 122
Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGY-YKIASQ 168
MM+ L+ DA+DAL IA+CHA+H S + +A
Sbjct: 123 QMMVMHLLKLVQKPQIDASDALGIALCHAHHRQSLIPHGLAGA 165
>gi|288939915|ref|YP_003442155.1| crossover junction endodeoxyribonuclease RuvC [Allochromatium
vinosum DSM 180]
gi|288895287|gb|ADC61123.1| crossover junction endodeoxyribonuclease RuvC [Allochromatium
vinosum DSM 180]
Length = 178
Score = 173 bits (438), Expect = 1e-41, Method: Composition-based stats.
Identities = 61/163 (37%), Positives = 93/163 (57%), Gaps = 1/163 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
RI+GIDPG R TG+G++D G + V+SG I RL +++ + ++ ++P
Sbjct: 10 RILGIDPGSRNTGFGVIDTDGHHSVRVASGCIRV-GEHPWPDRLGLIFDQVAAIVAEYQP 68
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
E AVEQ+ +D A LK+GQAR + + V EY+P ++K AV+G G DK Q
Sbjct: 69 HEMAVEQLIFARDPTAALKIGQARGAVLCAGLKGGAIVHEYSPKSVKLAVVGSGGADKSQ 128
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
+ M+++L+ G+D ADALAIA+CHA+ K A+
Sbjct: 129 VQHMVRVLLALPETPGEDEADALAIALCHAHSMGIPARKRAAA 171
>gi|332525532|ref|ZP_08401687.1| Holliday junction resolvase [Rubrivivax benzoatilyticus JA2]
gi|332109097|gb|EGJ10020.1| Holliday junction resolvase [Rubrivivax benzoatilyticus JA2]
Length = 191
Score = 173 bits (438), Expect = 1e-41, Method: Composition-based stats.
Identities = 69/158 (43%), Positives = 100/158 (63%), Gaps = 2/158 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSC--VRQSLAFRLCQLYEGLTDVIKN 62
+RI+GIDPGL+RTG+G++D G L +V+SG I + R L RL ++EG+ +V+
Sbjct: 1 MRILGIDPGLQRTGFGVIDADGPRLAYVASGVIDTAEAPRGDLPQRLKIIFEGVAEVVSR 60
Query: 63 WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
+ P+ A+ E VFVN + +TL LGQAR A+ + A +PV+EY +KKAV G G
Sbjct: 61 YEPQAASAEIVFVNTNPQSTLLLGQARGAALAALVSAGLPVAEYTAVQMKKAVTGHGLAS 120
Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
K+QI M++ L+ GKDAADAL IA+ HA+ +
Sbjct: 121 KEQIQEMVRRLLALPGVPGKDAADALGIAIAHAHAGGT 158
>gi|146306302|ref|YP_001186767.1| Holliday junction resolvase [Pseudomonas mendocina ymp]
gi|166233286|sp|A4XRR9|RUVC_PSEMY RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|145574503|gb|ABP84035.1| Holliday junction endonuclease RuvC [Pseudomonas mendocina ymp]
Length = 174
Score = 173 bits (438), Expect = 1e-41, Method: Composition-based stats.
Identities = 65/154 (42%), Positives = 96/154 (62%), Gaps = 1/154 (0%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
I+GIDPG R TG+G+V G +V+SG I + LA RL ++ G+++VI+ P
Sbjct: 4 ILGIDPGSRITGYGVVRDTGRGCEYVASGCIRT-GDGPLAERLQIVFRGVSEVIRTHGPV 62
Query: 67 EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
+EQVF+ ++A + LKLGQAR AI++ A + +SEY +K+AV+G G DK+Q+
Sbjct: 63 TMGIEQVFMARNADSALKLGQARGAAIVAAVEAGLEISEYTATQVKQAVVGTGAADKQQV 122
Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
MM+ L+ DA+DAL IA+CHA+H S
Sbjct: 123 QMMVMHLLKLVQKPQIDASDALGIALCHAHHRQS 156
>gi|303235799|ref|ZP_07322406.1| crossover junction endodeoxyribonuclease RuvC [Prevotella disiens
FB035-09AN]
gi|302484246|gb|EFL47234.1| crossover junction endodeoxyribonuclease RuvC [Prevotella disiens
FB035-09AN]
Length = 192
Score = 173 bits (438), Expect = 1e-41, Method: Composition-based stats.
Identities = 54/161 (33%), Positives = 85/161 (52%), Gaps = 3/161 (1%)
Query: 2 RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
+ + I+GIDPG G+G++ G+ V G I + RL +++E +T +I+
Sbjct: 7 KPARIILGIDPGTNVMGYGVIQAKGNKAEMVVMGVIDMRKEKDPYLRLGKIFERVTGIIE 66
Query: 62 NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
+ P+E A+E F K+ + LKLG+A+ +AI + +P+ EYAP IK A+ G G
Sbjct: 67 EYLPDEMAIEAPFFGKNIQSMLKLGRAQGVAIAAAIQRDVPIHEYAPLKIKMAITGNGQA 126
Query: 122 DKKQIHMMLKMLMPE---SFFKGKDAADALAIAVCHAYHAN 159
K Q+ ML+ L+ + DA DAL A CH +N
Sbjct: 127 SKNQVAGMLQRLLHLKDDEMPQFMDATDALGAAYCHFLQSN 167
>gi|171464160|ref|YP_001798273.1| crossover junction endodeoxyribonuclease RuvC [Polynucleobacter
necessarius subsp. necessarius STIR1]
gi|238692823|sp|B1XS24|RUVC_POLNS RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|171193698|gb|ACB44659.1| crossover junction endodeoxyribonuclease RuvC [Polynucleobacter
necessarius subsp. necessarius STIR1]
Length = 168
Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats.
Identities = 71/155 (45%), Positives = 102/155 (65%), Gaps = 3/155 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+R IGIDPGL TG+GI+DV G L +V+SGTI S A RL LY GL +V++ +R
Sbjct: 1 MRWIGIDPGLCTTGFGIIDVDGQKLTYVASGTIESG---DPAKRLGALYAGLKEVLETYR 57
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
PE AA+E+VF+N + +TL LGQAR I + ++PV+EY+ +K+A++G G K
Sbjct: 58 PESAAIEEVFLNVNPRSTLMLGQARGAVIAALVSEKLPVAEYSALRVKQAIVGTGRAAKP 117
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHAN 159
Q+ M+K L+ + G DA+DAL +A+C A+HA
Sbjct: 118 QVQEMVKRLLRLNRAPGTDASDALGVAICAAHHAQ 152
>gi|163753114|ref|ZP_02160238.1| Holliday junction resolvase [Kordia algicida OT-1]
gi|161326846|gb|EDP98171.1| Holliday junction resolvase [Kordia algicida OT-1]
Length = 191
Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats.
Identities = 50/155 (32%), Positives = 85/155 (54%), Gaps = 1/155 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG G+G++ V G + F+ + + +L ++E ++I + P
Sbjct: 13 IILGIDPGTTIMGFGLIKVVGKKMHFLQLNELQLQKYKDHYLKLKLIFERTVELIDTYHP 72
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+E A+E F K+ + LKLG+A+ +A+ + +P++EY+P IK A+ G G+ K+Q
Sbjct: 73 DEIAIEAPFFGKNVQSMLKLGRAQGVAMAAGLSREVPITEYSPKKIKMAITGNGNASKEQ 132
Query: 126 IHMMLKMLMPESF-FKGKDAADALAIAVCHAYHAN 159
+ ML+ L+ K D+ D LA AVCH Y+
Sbjct: 133 VAKMLQSLLQLKTLPKNLDSTDGLAAAVCHFYNEG 167
>gi|70732090|ref|YP_261846.1| Holliday junction resolvase [Pseudomonas fluorescens Pf-5]
gi|110282923|sp|Q4K7D7|RUVC_PSEF5 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|68346389|gb|AAY93995.1| crossover junction endodeoxyribonuclease RuvC [Pseudomonas
fluorescens Pf-5]
Length = 174
Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats.
Identities = 62/154 (40%), Positives = 97/154 (62%), Gaps = 1/154 (0%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
I+GIDPG R TG+G+V G +V+SG I + + L RL +Y G+ +VI+ + P
Sbjct: 4 ILGIDPGSRITGYGVVRDTGRGCVYVASGCIRTGAGE-LPDRLQIVYRGVREVIQTYGPV 62
Query: 67 EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
+E+VF+ ++A + LKLGQAR AI++ A + ++EY +K+AV G G +K+Q+
Sbjct: 63 TMGIEKVFMARNADSALKLGQARGAAIVAGAEEGLEIAEYTATQVKQAVAGTGGANKEQV 122
Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
MM+ L+ + DA+DALAIA+CHA+ +S
Sbjct: 123 QMMVMHLLKLTTKPQIDASDALAIAICHAHTRSS 156
>gi|264680236|ref|YP_003280146.1| crossover junction endodeoxyribonuclease RuvC [Comamonas
testosteroni CNB-2]
gi|299533109|ref|ZP_07046494.1| Holliday junction resolvase [Comamonas testosteroni S44]
gi|262210752|gb|ACY34850.1| crossover junction endodeoxyribonuclease RuvC [Comamonas
testosteroni CNB-2]
gi|298718886|gb|EFI59858.1| Holliday junction resolvase [Comamonas testosteroni S44]
Length = 182
Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats.
Identities = 68/151 (45%), Positives = 97/151 (64%), Gaps = 2/151 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQ--SLAFRLCQLYEGLTDVIKN 62
+RI+GIDPGL+ TG+G++D+ G L +V+SGTI + + L RL L++G+++V
Sbjct: 1 MRILGIDPGLQTTGFGVIDMEGQRLSYVASGTIRTNKMELGDLPGRLKVLFDGISEVASR 60
Query: 63 WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
++PE AAVE VFVN + +TL LGQAR A+ + A + VSEY +KKAV+G G
Sbjct: 61 YQPEVAAVEIVFVNVNPQSTLLLGQARGAALTALVNANLAVSEYTALQMKKAVVGHGRAA 120
Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAIAVC 153
K QI M+K L+ G DAADAL +A+
Sbjct: 121 KSQIQEMVKRLLQLPGLPGTDAADALGLAIT 151
>gi|304393334|ref|ZP_07375262.1| crossover junction endodeoxyribonuclease RuvC [Ahrensia sp. R2A130]
gi|303294341|gb|EFL88713.1| crossover junction endodeoxyribonuclease RuvC [Ahrensia sp. R2A130]
Length = 169
Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats.
Identities = 95/157 (60%), Positives = 125/157 (79%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M ++RI+GIDPGLR TGWG+V+ G L F+++GT+ S + LA RL +L++GL DV+
Sbjct: 1 MNHTVRILGIDPGLRFTGWGVVESEGSRLRFIAAGTVKSNAKADLATRLRELHDGLQDVL 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
+ P+EAAVE FVNKDA ATLKLGQAR IA++ PALA +PV+EYAPN +KKAVIGVGH
Sbjct: 61 RAQSPDEAAVENTFVNKDATATLKLGQARGIAMVVPALAGLPVAEYAPNAVKKAVIGVGH 120
Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYH 157
GDKKQI +M+ ML+P++ + +DAAD LAIA+CHA+H
Sbjct: 121 GDKKQIALMVGMLLPKAVWDTEDAADGLAIAICHAHH 157
>gi|260887322|ref|ZP_05898585.1| crossover junction endodeoxyribonuclease RuvC [Selenomonas
sputigena ATCC 35185]
gi|330838925|ref|YP_004413505.1| crossover junction endodeoxyribonuclease RuvC [Selenomonas
sputigena ATCC 35185]
gi|260862958|gb|EEX77458.1| crossover junction endodeoxyribonuclease RuvC [Selenomonas
sputigena ATCC 35185]
gi|329746689|gb|AEC00046.1| crossover junction endodeoxyribonuclease RuvC [Selenomonas
sputigena ATCC 35185]
Length = 164
Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats.
Identities = 51/161 (31%), Positives = 89/161 (55%), Gaps = 1/161 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ +GIDPG G+G V G L + G + + + + RL +LY+GL +IK ++
Sbjct: 1 MLALGIDPGTAICGFGFVSSEGSRLVPHAYGALTTSPKARMEDRLMKLYDGLDALIKEYK 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ +EQ+F N++ + +GQAR + +L+ A + ++E+ P +K+AV G G K+
Sbjct: 61 PDVMGIEQLFFNRNVTTAIPVGQARGVVLLAAAKNGLEIAEHTPLQVKQAVTGYGKARKE 120
Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHANSGYYK 164
Q+ M+ L+ K D ADALA+A+C + S ++
Sbjct: 121 QVIYMVSKLLHLAKPPKPDDVADALAVAICTTHCMASAAWR 161
>gi|87198446|ref|YP_495703.1| crossover junction endodeoxyribonuclease RuvC [Novosphingobium
aromaticivorans DSM 12444]
gi|123763648|sp|Q2GBA4|RUVC_NOVAD RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|87134127|gb|ABD24869.1| crossover junction endodeoxyribonuclease RuvC [Novosphingobium
aromaticivorans DSM 12444]
Length = 158
Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats.
Identities = 72/156 (46%), Positives = 105/156 (67%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ I+GIDPGL TGWG+V +G L V++G I + + ++A RL +L L VI ++
Sbjct: 1 MIILGIDPGLTVTGWGVVAKSGSRLSHVANGQIRTDNKATMAERLVELDSALAAVIDIYK 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ AVE+VFVN + +TLKLGQAR +A+++ A + IPV+EY IKKA++G G +K+
Sbjct: 61 PDTGAVEEVFVNVNPQSTLKLGQARGVAMVAVARSGIPVAEYPTKVIKKALVGTGGAEKQ 120
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
QI MLK+L+P G+DA+DALA+A+ HA S
Sbjct: 121 QIQHMLKILLPGVQLAGEDASDALAVAITHANMLGS 156
>gi|330811394|ref|YP_004355856.1| Crossover junction endodeoxyribonuclease [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
gi|327379502|gb|AEA70852.1| Crossover junction endodeoxyribonuclease [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
Length = 174
Score = 172 bits (436), Expect = 1e-41, Method: Composition-based stats.
Identities = 62/154 (40%), Positives = 98/154 (63%), Gaps = 1/154 (0%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
I+GIDPG R TG+G+V G +V+SG I + + L RL +Y G+ +VI+ + P
Sbjct: 4 ILGIDPGSRITGYGVVRDTGRGCVYVASGCIRTGAGE-LHERLQIVYRGVREVIQTYGPV 62
Query: 67 EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
+E+VF+ ++A + LKLGQAR AI++ A + ++EY+ +K+AV+G G +K+Q+
Sbjct: 63 TMGIEKVFMARNADSALKLGQARGAAIVAGAEENLEIAEYSATQVKQAVVGTGAANKEQV 122
Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
MM+ L+ DA+DALAIA+CHA+ +S
Sbjct: 123 QMMVMHLLKLVSKPQIDASDALAIAICHAHTRSS 156
>gi|284044633|ref|YP_003394973.1| crossover junction endodeoxyribonuclease RuvC [Conexibacter woesei
DSM 14684]
gi|283948854|gb|ADB51598.1| crossover junction endodeoxyribonuclease RuvC [Conexibacter woesei
DSM 14684]
Length = 164
Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats.
Identities = 51/164 (31%), Positives = 84/164 (51%), Gaps = 1/164 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ ++GIDPG TG+G+V + + G I + Q+L RL ++ L ++I R
Sbjct: 1 MIVLGIDPGTANTGYGVVAQRRGRVVALDGGVIETPAGQALERRLATIHRRLCELIAEHR 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P AVE ++ +A + +GQAR + +L+ + S Y P IK AV G G +K
Sbjct: 61 PVAVAVEDLYFGANARSAFAVGQARGVVLLAAGQHDLACSSYTPQQIKSAVCGSGRAEKL 120
Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
Q+ M++ L+ + AADALA+A+CH A +++
Sbjct: 121 QVQQMVQRLLSLTELPRPDHAADALAVAICHTNRAPLAAAMVSA 164
>gi|290967869|ref|ZP_06559419.1| crossover junction endodeoxyribonuclease RuvC [Megasphaera
genomosp. type_1 str. 28L]
gi|290782008|gb|EFD94586.1| crossover junction endodeoxyribonuclease RuvC [Megasphaera
genomosp. type_1 str. 28L]
Length = 166
Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats.
Identities = 57/161 (35%), Positives = 89/161 (55%), Gaps = 1/161 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+R +GIDPG G+G+VD G L V+ GTI + + A RL L++GL ++ ++
Sbjct: 1 MRALGIDPGTAICGFGVVDAQGSRLHPVTYGTIRTSPEDTDAQRLVMLFKGLKELYATYQ 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ VEQ+F N++ + +GQAR I +L+ A IP+ E+ P +K+ V G G K+
Sbjct: 61 PDVVGVEQLFFNRNVTTAITVGQARGIILLTAEQAGIPILEFTPLQVKQGVTGYGRATKE 120
Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHANSGYYK 164
Q+ M ++ K DAAD LA+A+ Y +S K
Sbjct: 121 QVTDMTMRILGIREKIKPDDAADGLAMAIYAVYSQHSQRLK 161
>gi|53804472|ref|YP_113685.1| crossover junction endodeoxyribonuclease RuvC [Methylococcus
capsulatus str. Bath]
gi|81682300|sp|Q609L2|RUVC_METCA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|53758233|gb|AAU92524.1| crossover junction endodeoxyribonuclease RuvC [Methylococcus
capsulatus str. Bath]
Length = 165
Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats.
Identities = 64/155 (41%), Positives = 98/155 (63%), Gaps = 2/155 (1%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
R++GIDPG R TG+GI+D G V++G I + RL +++EG++ +++ +RP
Sbjct: 3 RVLGIDPGSRVTGYGILDWTG-KPVLVAAGCIRTET-DDFPERLRRIFEGISRIVEEFRP 60
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
EE AVEQVF++K+A + LKLGQAR AI + +PV EYA +K A++G G DK Q
Sbjct: 61 EEMAVEQVFMHKNADSALKLGQARGAAICAGVAHGLPVHEYAARQVKLALVGKGSADKAQ 120
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
+ M+ L+ ++ DA+DAL +A CH +H +
Sbjct: 121 VQHMVCFLLGQAGPLALDASDALGVAFCHLHHRQT 155
>gi|295136120|ref|YP_003586796.1| Holliday junction resolvase [Zunongwangia profunda SM-A87]
gi|294984135|gb|ADF54600.1| Holliday junction resolvase [Zunongwangia profunda SM-A87]
Length = 182
Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats.
Identities = 52/161 (32%), Positives = 86/161 (53%), Gaps = 2/161 (1%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M + I I+GIDPG G+G++ V N+ F+ + +L ++E +I
Sbjct: 1 MSEKI-ILGIDPGTTIMGFGLIKVKNKNMEFLQLNELQLKKYDDHYVKLKLIFERTIQLI 59
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
+ P+E A+E F K+ + LKLG+A+ +A+ + IP++EY P IK A+ G G+
Sbjct: 60 DTFHPDEIAIEAPFFGKNVQSMLKLGRAQGVAMAAGLSREIPITEYLPKKIKMAITGNGN 119
Query: 121 GDKKQIHMMLKMLMPESF-FKGKDAADALAIAVCHAYHANS 160
K+Q+ ML+ ++ K D+ D LA AVCH Y++
Sbjct: 120 ASKEQVAKMLQSMLKLKSLPKNLDSTDGLAAAVCHFYNSGQ 160
>gi|146283145|ref|YP_001173298.1| Holliday junction resolvase [Pseudomonas stutzeri A1501]
gi|166233288|sp|A4VNA5|RUVC_PSEU5 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|145571350|gb|ABP80456.1| crossover junction endodeoxyribonuclease RuvC [Pseudomonas stutzeri
A1501]
Length = 174
Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats.
Identities = 64/154 (41%), Positives = 99/154 (64%), Gaps = 1/154 (0%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
I+GIDPG R TG+G+V G +V+SG I + + L+ RL ++ G+++VI+ + P
Sbjct: 4 ILGIDPGSRITGYGVVRDTGRGCEYVASGCIRTGSGE-LSERLRAVFSGVSEVIRTYGPV 62
Query: 67 EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
+EQVF+ ++A + LKLGQAR AI++ A A + ++EY +K+A+ G G DK+Q+
Sbjct: 63 TMGIEQVFMARNADSALKLGQARGAAIVAGAEAGLQIAEYTATQVKQAIAGTGGADKQQV 122
Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
MM+ L+ DA+DALAIA+CHA+H S
Sbjct: 123 QMMVMHLLKLLEKPQIDASDALAIALCHAHHRQS 156
>gi|86141893|ref|ZP_01060417.1| Holliday junction resolvase [Leeuwenhoekiella blandensis MED217]
gi|85831456|gb|EAQ49912.1| Holliday junction resolvase [Leeuwenhoekiella blandensis MED217]
Length = 184
Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats.
Identities = 51/160 (31%), Positives = 86/160 (53%), Gaps = 1/160 (0%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M+ I+GIDPG G+G++ V + F+ ++ +L ++E ++I
Sbjct: 1 MKSEKIILGIDPGTTIMGFGLIKVVDKKMQFMQLNELMLKKYDDPYVKLKLIFERTVELI 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
+ P+E A+E F K+ + LKLG+A+ +A+ + IPV+EY P IK A+ G G+
Sbjct: 61 DTYHPDEMAIEAPFFGKNVQSMLKLGRAQGVAMAAGLSREIPVTEYLPKKIKMAITGNGN 120
Query: 121 GDKKQIHMMLKMLMPESF-FKGKDAADALAIAVCHAYHAN 159
K+Q+ ML+ L+ K D+ D LA AVCH +++
Sbjct: 121 ASKEQVAKMLQSLLGLKTLPKNLDSTDGLAAAVCHHFNSG 160
>gi|86132383|ref|ZP_01050977.1| crossover junction endodeoxyribonuclease RuvC [Dokdonia donghaensis
MED134]
gi|85816944|gb|EAQ38128.1| crossover junction endodeoxyribonuclease RuvC [Dokdonia donghaensis
MED134]
Length = 184
Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats.
Identities = 54/160 (33%), Positives = 85/160 (53%), Gaps = 1/160 (0%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M I+GIDPG G+G++ V G + F+ ++ +L ++E +I
Sbjct: 1 MADEKIILGIDPGTTIMGFGLIKVVGKKMEFMQLNELLLQKYNDPYVKLKLIFERTIHLI 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
+ P+E A+E F K+ + LKLG+A+ +A+ + IP++EY P IK AV G G+
Sbjct: 61 DTYHPDEIAIEAPFFGKNVQSMLKLGRAQGVAMAAGLSREIPITEYLPKKIKMAVTGNGN 120
Query: 121 GDKKQIHMMLKMLMPESF-FKGKDAADALAIAVCHAYHAN 159
K+Q+ ML+ L+ K DA D LA AVCH Y++
Sbjct: 121 ASKEQVARMLQSLLKLKTLPKNLDATDGLAAAVCHFYNSG 160
>gi|91202551|emb|CAJ72190.1| strongly similar to crossover junction endodioxyribonuclease RuvC
[Candidatus Kuenenia stuttgartiensis]
Length = 155
Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats.
Identities = 58/154 (37%), Positives = 97/154 (62%), Gaps = 1/154 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
++I+GIDPG G+G+++ +G + V+ G+I + Q+ RL +Y G+T++I ++
Sbjct: 1 MKILGIDPGTLIAGYGVIEKSGAEIKAVAYGSIKTGKNQNFPERLKTIYTGVTELITIYK 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ AVE+VF K+ A +K+G+ R I L A+A IP++EYA +KKAV G G+ K
Sbjct: 61 PDHMAVEEVFFGKNFKAAIKIGEGRGIIFLCAAMANIPIAEYAARVVKKAVAGNGNAHKG 120
Query: 125 QIHMMLKMLMPESFFK-GKDAADALAIAVCHAYH 157
++ M+K ++ +DA+DALAIA+CH +
Sbjct: 121 KVQEMVKAILGLPEIPQPEDASDALAIAICHGHR 154
>gi|312129060|ref|YP_003996400.1| crossover junction endodeoxyribonuclease ruvc [Leadbetterella
byssophila DSM 17132]
gi|311905606|gb|ADQ16047.1| crossover junction endodeoxyribonuclease RuvC [Leadbetterella
byssophila DSM 17132]
Length = 189
Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats.
Identities = 52/164 (31%), Positives = 90/164 (54%), Gaps = 4/164 (2%)
Query: 1 MRKSI---RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLT 57
M+ + I+G+DPG R G+GI++V L + G + S +L +++E +T
Sbjct: 1 MQAKVSEKIILGVDPGTRVMGYGIIEVKNSQLKVIQYGVLRLEKLTSHELKLKRIFERIT 60
Query: 58 DVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIG 117
+I + P+E A+E F ++ + LKLG+A+ +A+ + I + EY P +K++V G
Sbjct: 61 QLINEYLPDEMAIEAPFYGENVQSMLKLGRAQGVAMAAALAKDINIVEYLPKKVKQSVTG 120
Query: 118 VGHGDKKQIHMMLKMLMPESFFKG-KDAADALAIAVCHAYHANS 160
G+ K+Q+ ML+ L + DA DALA+ VCH H+ +
Sbjct: 121 NGNATKEQVAYMLEKLFNHPLERTFLDATDALAVGVCHFMHSGT 164
>gi|147919263|ref|YP_687001.1| holliday junction resolvasome, endonuclease subunit [uncultured
methanogenic archaeon RC-I]
gi|110622397|emb|CAJ37675.1| holliday junction resolvasome, endonuclease subunit [uncultured
methanogenic archaeon RC-I]
Length = 172
Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats.
Identities = 56/155 (36%), Positives = 89/155 (57%), Gaps = 1/155 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPG G+GIV+ + L G I + + RL LY+ ++ VI ++
Sbjct: 1 MRILGIDPGFALVGFGIVEAGKNGLKAGKYGHISTESGLPVPDRLKILYDDMSTVIAEYK 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ AVE++F NK+ + AR + +L+ A + V+EY P +K+AV+G G K+
Sbjct: 61 PDVVAVEELFFNKNVKTAIVASHARGVLVLAAVNAGLEVAEYTPLQVKQAVVGYGRATKQ 120
Query: 125 QIHMMLKMLM-PESFFKGKDAADALAIAVCHAYHA 158
Q+ +M+ L+ + K D ADALA+A+CHA A
Sbjct: 121 QVQLMVTRLLALKEVPKPDDTADALAVAICHANSA 155
>gi|325286716|ref|YP_004262506.1| Crossover junction endodeoxyribonuclease ruvC [Cellulophaga lytica
DSM 7489]
gi|324322170|gb|ADY29635.1| Crossover junction endodeoxyribonuclease ruvC [Cellulophaga lytica
DSM 7489]
Length = 184
Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats.
Identities = 52/160 (32%), Positives = 87/160 (54%), Gaps = 1/160 (0%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M K I+G+DPG G+G++ V G + F+ ++ +L ++E ++I
Sbjct: 1 MAKERIILGVDPGTTIMGFGLIKVVGKKMEFLQMNELLLQKYNDPYTKLKLIFERTIELI 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
+ P+E A+E F K+ + LKLG+A+ +A+ + ++ ++EY P IK A+ G G+
Sbjct: 61 DTYHPDEMALEAPFYGKNVQSMLKLGRAQGVAMAAGLSRQLVITEYMPKKIKMAITGNGN 120
Query: 121 GDKKQIHMMLK-MLMPESFFKGKDAADALAIAVCHAYHAN 159
K+Q+ MLK L + K DA D LA AVCH Y++
Sbjct: 121 ASKEQVAGMLKSTLGLKELPKNLDATDGLAAAVCHFYNSG 160
>gi|307294017|ref|ZP_07573861.1| crossover junction endodeoxyribonuclease RuvC [Sphingobium
chlorophenolicum L-1]
gi|306880168|gb|EFN11385.1| crossover junction endodeoxyribonuclease RuvC [Sphingobium
chlorophenolicum L-1]
Length = 163
Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats.
Identities = 68/158 (43%), Positives = 103/158 (65%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ I+G+DPGL TGWG++ G+ L +++G I + +LA RL L LTD+I +
Sbjct: 1 MIILGLDPGLGTTGWGLIAADGNRLTHIANGQIKTDSDMALASRLLVLDLALTDLILEHQ 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P AAVE+VF+N + +TLKLGQAR + +L+ + + + V EYA +KK+V+GVG+ K+
Sbjct: 61 PNSAAVEEVFLNVNPQSTLKLGQARGVILLAASRSGMEVGEYAARLVKKSVVGVGNASKE 120
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGY 162
Q+H M+ L+P G DA+DALA+A+ HA+H S
Sbjct: 121 QVHAMVSRLLPGVKVAGPDASDALAVAITHAHHLASAR 158
>gi|327481498|gb|AEA84808.1| Holliday junction resolvase [Pseudomonas stutzeri DSM 4166]
Length = 174
Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats.
Identities = 64/154 (41%), Positives = 99/154 (64%), Gaps = 1/154 (0%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
I+GIDPG R TG+G+V G +V+SG I + + L+ RL ++ G+++VI+ + P
Sbjct: 4 ILGIDPGSRITGYGVVRDTGRGCEYVASGCIRTGSGE-LSERLRAVFSGVSEVIRTYGPV 62
Query: 67 EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
+EQVF+ ++A + LKLGQAR AI++ A A + ++EY +K+A+ G G DK+Q+
Sbjct: 63 TMGIEQVFMARNADSALKLGQARGAAIVAGAEAGLQIAEYTATQVKQAIAGTGGADKQQV 122
Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
MM+ L+ DA+DALAIA+CHA+H S
Sbjct: 123 QMMVMHLLKLLEKPQIDASDALAIALCHAHHGQS 156
>gi|218263283|ref|ZP_03477454.1| hypothetical protein PRABACTJOHN_03138 [Parabacteroides johnsonii
DSM 18315]
gi|218222829|gb|EEC95479.1| hypothetical protein PRABACTJOHN_03138 [Parabacteroides johnsonii
DSM 18315]
Length = 185
Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats.
Identities = 52/163 (31%), Positives = 85/163 (52%), Gaps = 3/163 (1%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M K I+GIDPG G+G++ + G + G + + RL +++E + +I
Sbjct: 1 MTKDRVILGIDPGTIVMGYGVLKIEGHKPKLEAMGILQLNKYEDHYLRLRKIFERVLGLI 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
+ P+E A+E F K+ + LKLG+A+ +A+ + IP+ EYAP IK ++ G G+
Sbjct: 61 DQYHPDELAIEAPFFGKNVQSMLKLGRAQGVAMAAALERDIPIFEYAPLKIKMSITGNGN 120
Query: 121 GDKKQIHMMLKMLMPESF---FKGKDAADALAIAVCHAYHANS 160
K+Q+ ML+ + DA D LA AVCH + N+
Sbjct: 121 AAKEQVAGMLQRYLHIPEASMLPQLDATDGLAAAVCHYFQTNN 163
>gi|225011446|ref|ZP_03701884.1| crossover junction endodeoxyribonuclease RuvC [Flavobacteria
bacterium MS024-2A]
gi|225003949|gb|EEG41921.1| crossover junction endodeoxyribonuclease RuvC [Flavobacteria
bacterium MS024-2A]
Length = 184
Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats.
Identities = 49/161 (30%), Positives = 88/161 (54%), Gaps = 1/161 (0%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M+ I+GIDPG G+G++ +++ + + + +L +++ ++I
Sbjct: 1 MQNEQIILGIDPGTTIMGFGLIKTTKNSMELIQMHELHLKKYDNHFMKLGIIFKRTIELI 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
+ + P+E A+E F K+ + LKLG+A+ +A+ + IP++EY+P IK A+ G G+
Sbjct: 61 EEYHPDELAIEAPFFGKNVQSMLKLGRAQGVAMAAGLSREIPITEYSPKKIKMAITGNGN 120
Query: 121 GDKKQIHMMLKMLMPESF-FKGKDAADALAIAVCHAYHANS 160
K+Q+ ML+ L+ K DA D LA AVCH Y+ +
Sbjct: 121 ASKEQVAKMLQSLLKIKTLPKNLDATDGLAAAVCHYYNQGT 161
>gi|294013343|ref|YP_003546803.1| crossover junction endodeoxyribonuclease [Sphingobium japonicum
UT26S]
gi|292676673|dbj|BAI98191.1| crossover junction endodeoxyribonuclease [Sphingobium japonicum
UT26S]
Length = 163
Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats.
Identities = 68/158 (43%), Positives = 104/158 (65%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ I+G+DPGL TGWG++ G+ L +++G I + +LA RL L LTD+I +
Sbjct: 1 MIILGLDPGLGTTGWGLIAADGNRLTHIANGQIKTDSDMALASRLLVLDLALTDLILEHQ 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P AAVE+VF+N + +TLKLGQAR + +L+ + + + V EYA +KK+V+GVG+ K+
Sbjct: 61 PNGAAVEEVFLNVNPQSTLKLGQARGVVLLAASRSGMEVGEYAARLVKKSVVGVGNASKE 120
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGY 162
Q+H M+ L+P + G DA+DALA+A+ HA+H S
Sbjct: 121 QVHAMVSRLLPGAKVAGPDASDALAVAITHAHHLASAR 158
>gi|154494158|ref|ZP_02033478.1| hypothetical protein PARMER_03505 [Parabacteroides merdae ATCC
43184]
gi|154086020|gb|EDN85065.1| hypothetical protein PARMER_03505 [Parabacteroides merdae ATCC
43184]
Length = 185
Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats.
Identities = 52/163 (31%), Positives = 86/163 (52%), Gaps = 3/163 (1%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M K I+GIDPG G+G++ + G+ + G + + RL +++E + +I
Sbjct: 1 MTKDRVILGIDPGTIVMGYGVLTIEGNKPKLEAMGILQLNKYEDHYLRLRKIFERVLGLI 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
+ P+E A+E F K+ + LKLG+A+ +A+ + IP+ EYAP IK ++ G G+
Sbjct: 61 DQYHPDELAIEAPFFGKNVQSMLKLGRAQGVAMAAALERDIPIFEYAPLKIKMSITGNGN 120
Query: 121 GDKKQIHMMLKMLMPESF---FKGKDAADALAIAVCHAYHANS 160
K+Q+ ML+ + DA D LA AVCH + N+
Sbjct: 121 AAKEQVAGMLQRYLHIPEASMLPQLDATDGLAAAVCHYFQTNN 163
>gi|149370094|ref|ZP_01889945.1| Holliday junction resolvase [unidentified eubacterium SCB49]
gi|149356585|gb|EDM45141.1| Holliday junction resolvase [unidentified eubacterium SCB49]
Length = 186
Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats.
Identities = 54/162 (33%), Positives = 91/162 (56%), Gaps = 2/162 (1%)
Query: 1 MRKSIRI-IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDV 59
M K+ +I +GIDPG G+G++ V G + F+ + RL +++ ++
Sbjct: 1 MSKTEKIILGIDPGTSIMGFGLIKVVGKKMEFMLLNELQLSKYDDHYKRLKIIFDRTIEL 60
Query: 60 IKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVG 119
I N+ P+E A+E F K+ + LKLG+A+ +A+ + IP++EYAP IK A+ G G
Sbjct: 61 IDNYHPDEIAIEAPFFGKNVQSMLKLGRAQGVAMAAGLSREIPITEYAPKKIKMAITGSG 120
Query: 120 HGDKKQIHMMLKMLMPESF-FKGKDAADALAIAVCHAYHANS 160
+ K+Q+ ML+ ++ K D+ D LA AVCH Y++ +
Sbjct: 121 NASKEQVAKMLQSMLGLKTLPKNLDSTDGLAAAVCHFYNSGN 162
>gi|325105437|ref|YP_004275091.1| crossover junction endodeoxyribonuclease RuvC [Pedobacter saltans
DSM 12145]
gi|324974285|gb|ADY53269.1| crossover junction endodeoxyribonuclease RuvC [Pedobacter saltans
DSM 12145]
Length = 188
Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats.
Identities = 49/160 (30%), Positives = 88/160 (55%), Gaps = 1/160 (0%)
Query: 2 RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
K I+GIDPG G+G++ G + ++ G I +L +++E + +I+
Sbjct: 6 SKERIILGIDPGTAVMGYGLIKETGSKISLINLGVIRLDHLDDHPLKLQRIFEKTSLLIE 65
Query: 62 NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
++P+ A+E F K+ LKLG+A+ +A+ + +P+ EY+P +K+A+ G G+
Sbjct: 66 QYKPDCMALEAPFYGKNVQVMLKLGRAQGVAMAAGLAKNLPIMEYSPKKVKQAITGNGNA 125
Query: 122 DKKQIHMMLKMLMP-ESFFKGKDAADALAIAVCHAYHANS 160
K+Q+ ML L+ + + DA D LA+AVCH++ S
Sbjct: 126 GKEQVAAMLMQLLDFKETPEFLDATDGLAVAVCHSFQKVS 165
>gi|229814934|ref|ZP_04445272.1| hypothetical protein COLINT_01977 [Collinsella intestinalis DSM
13280]
gi|229809421|gb|EEP45185.1| hypothetical protein COLINT_01977 [Collinsella intestinalis DSM
13280]
Length = 174
Score = 171 bits (433), Expect = 3e-41, Method: Composition-based stats.
Identities = 60/158 (37%), Positives = 90/158 (56%), Gaps = 1/158 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ I+GIDPGL TGWGIV+ + + G I + LA RL ++ + LT V+ +R
Sbjct: 1 MVILGIDPGLANTGWGIVEERRGEVRCRAYGCIETSSGSDLAARLRRIADELTAVVDRYR 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+EAAVE ++ + + + AR A+++ +L + V EY P IK+AV+G G DK
Sbjct: 61 PQEAAVEGIYFGANVRSAIPTAHARGAALVACSLCGVEVGEYTPMQIKQAVVGTGAADKT 120
Query: 125 QIHMMLKMLMPES-FFKGKDAADALAIAVCHAYHANSG 161
Q+ M++ L+ K AADALA AVCHA+ +
Sbjct: 121 QVTYMVRTLLHLDHDPKPDHAADALACAVCHAHLHRTR 158
>gi|209695354|ref|YP_002263283.1| Holliday junction resolvase [Aliivibrio salmonicida LFI1238]
gi|226698789|sp|B6EGJ2|RUVC_ALISL RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|208009306|emb|CAQ79572.1| crossover junction endodeoxyribonuclease RuvC [Aliivibrio
salmonicida LFI1238]
Length = 173
Score = 171 bits (433), Expect = 3e-41, Method: Composition-based stats.
Identities = 65/163 (39%), Positives = 100/163 (61%), Gaps = 2/163 (1%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G +L ++ SG I ++ L RL Q+Y G++++I ++P
Sbjct: 3 IILGIDPGSRITGYGVIRQNGRHLQYLGSGCIRMSEKE-LPGRLKQIYAGVSEIITQFQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQVF++K+A + LKLGQAR AI++ A +PV EYA IK+AV G G DK Q
Sbjct: 62 DVFAIEQVFMSKNADSALKLGQARGSAIVAAVNADLPVYEYAARLIKQAVTGTGAADKAQ 121
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
+ M+ ++ DAAD L +A+CHA + +A +
Sbjct: 122 VQHMVMTMLKLPARPQADAADGLGVAICHANTNKT-LIALAGK 163
>gi|305665346|ref|YP_003861633.1| Holliday junction resolvase [Maribacter sp. HTCC2170]
gi|88710101|gb|EAR02333.1| Holliday junction resolvase [Maribacter sp. HTCC2170]
Length = 184
Score = 171 bits (433), Expect = 3e-41, Method: Composition-based stats.
Identities = 54/160 (33%), Positives = 86/160 (53%), Gaps = 1/160 (0%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M I+GIDPG G+GI+ V + FV ++ + +L ++E ++I
Sbjct: 1 MSNEKIILGIDPGTTIMGFGIIKVVNKQMKFVQMNELLLQKYKDPYTKLKLIFERTIELI 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
+ P+E A+E F K+ + LKLG+A+ +A+ + IP++EY P IK A+ G G+
Sbjct: 61 DTYHPDEIAIEAPFFGKNVQSMLKLGRAQGVAMAAGLSREIPITEYLPKKIKMAITGNGN 120
Query: 121 GDKKQIHMMLK-MLMPESFFKGKDAADALAIAVCHAYHAN 159
K+Q+ ML+ L +S K D+ D LA AVCH Y+
Sbjct: 121 ASKEQVAKMLQSTLGLKSLPKNLDSTDGLAAAVCHFYNQG 160
>gi|160934124|ref|ZP_02081511.1| hypothetical protein CLOLEP_02987 [Clostridium leptum DSM 753]
gi|156866797|gb|EDO60169.1| hypothetical protein CLOLEP_02987 [Clostridium leptum DSM 753]
Length = 170
Score = 171 bits (433), Expect = 4e-41, Method: Composition-based stats.
Identities = 47/159 (29%), Positives = 83/159 (52%), Gaps = 1/159 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ I+GIDPG G+G + + G I + + RL +Y+ + ++I+ R
Sbjct: 1 MIILGIDPGYAIVGYGALRFERGQYRAIGFGAITTEAGMDFSARLQYIYDNMMEMIRQCR 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ A+E+++ + + + + +AR I +L+ + +P+ EY P +K AV G G K
Sbjct: 61 PDAVAIEKLYFHTNQKTVIHVAEARGIILLAAQKSGVPIFEYTPLQVKTAVTGYGRAHKP 120
Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHANSGY 162
Q+ M L+ K D ADALA+A+CHA+ + S +
Sbjct: 121 QVMEMTTRLLKLKEVPKPDDTADALAVAICHAHASGSRF 159
>gi|213962625|ref|ZP_03390886.1| crossover junction endodeoxyribonuclease RuvC [Capnocytophaga
sputigena Capno]
gi|213954620|gb|EEB65941.1| crossover junction endodeoxyribonuclease RuvC [Capnocytophaga
sputigena Capno]
Length = 181
Score = 171 bits (433), Expect = 4e-41, Method: Composition-based stats.
Identities = 49/167 (29%), Positives = 89/167 (53%), Gaps = 3/167 (1%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M + I+GIDPG G+G++ V D + + + + +L ++ ++I
Sbjct: 1 MER--IILGIDPGTTIMGFGLIQVERDTMKLLQLNELQLSKYSNHYLKLSVIFNRTLELI 58
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
++P+E A+E F K+ + LKLG+A+ +A+ + +IP++EY P +K A+ G G
Sbjct: 59 DTYKPDELAIEAPFFGKNVQSMLKLGRAQGVAMAAGLSRQIPITEYEPKKVKMAITGNGS 118
Query: 121 GDKKQIHMMLKMLMP-ESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
K+Q+ ML+ L+ + K DA D LA+AVCH ++ + +
Sbjct: 119 ASKEQVAKMLQQLLNIKELPKHFDATDGLAVAVCHFFNGGKAQKQQS 165
>gi|254787342|ref|YP_003074771.1| Holliday junction resolvase [Teredinibacter turnerae T7901]
gi|259495695|sp|C5BQT6|RUVC_TERTT RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|237683498|gb|ACR10762.1| crossover junction endodeoxyribonuclease RuvC [Teredinibacter
turnerae T7901]
Length = 177
Score = 171 bits (433), Expect = 4e-41, Method: Composition-based stats.
Identities = 64/158 (40%), Positives = 99/158 (62%), Gaps = 4/158 (2%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCV----RQSLAFRLCQLYEGLTDVIKN 62
I+G+DPG R+ G+GI++ G L +V+SG + LA RL +++ L+++I+
Sbjct: 4 ILGVDPGSRKMGYGIINATGSRLGYVASGVVRIPQPLLVADCLAERLKVIFDSLSEIIEQ 63
Query: 63 WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
++P+E A+E VF+ K A + LKLGQAR AI++ +PVSEY +K+AV+G G D
Sbjct: 64 YQPQEFAIENVFMAKSAGSALKLGQARGAAIVAAVNKDLPVSEYEARKVKQAVVGTGAAD 123
Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
K Q+ M+ L+ S +DAADALA+A+CHA +
Sbjct: 124 KLQVQHMVCTLLKLSKAPAEDAADALAVAICHANSQQN 161
>gi|167770541|ref|ZP_02442594.1| hypothetical protein ANACOL_01887 [Anaerotruncus colihominis DSM
17241]
gi|167667136|gb|EDS11266.1| hypothetical protein ANACOL_01887 [Anaerotruncus colihominis DSM
17241]
Length = 163
Score = 171 bits (433), Expect = 4e-41, Method: Composition-based stats.
Identities = 51/162 (31%), Positives = 90/162 (55%), Gaps = 1/162 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ I+GIDPG G+G+V+ V G I + + + RL +Y+ +T ++ +
Sbjct: 1 MIILGIDPGYATVGYGVVNYDRGRFAPVRFGAITTPPKTDFSARLEMIYDDMTVLLDKSQ 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ ++EQ+F + + + + QAR + +LS +PV EY P +K++V+G G +KK
Sbjct: 61 PQALSIEQLFFSNNKTTAIDVAQARGVILLSARKHGVPVFEYTPMQVKQSVVGYGLAEKK 120
Query: 125 QIHMMLKMLMPESF-FKGKDAADALAIAVCHAYHANSGYYKI 165
Q+ M +ML+ + D ADALA+A+CH + A S ++
Sbjct: 121 QVMEMTRMLLGLEAVPRPDDTADALALAICHGHSAGSLLSRM 162
>gi|256818926|ref|YP_003140205.1| Holliday junction resolvase [Capnocytophaga ochracea DSM 7271]
gi|315224307|ref|ZP_07866141.1| crossover junction endoribonuclease subunit C [Capnocytophaga
ochracea F0287]
gi|256580509|gb|ACU91644.1| crossover junction endodeoxyribonuclease RuvC [Capnocytophaga
ochracea DSM 7271]
gi|314945697|gb|EFS97712.1| crossover junction endoribonuclease subunit C [Capnocytophaga
ochracea F0287]
Length = 181
Score = 170 bits (432), Expect = 4e-41, Method: Composition-based stats.
Identities = 49/167 (29%), Positives = 88/167 (52%), Gaps = 3/167 (1%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M + I+GIDPG G+G++ V D + + + + +L ++ ++I
Sbjct: 1 MER--IILGIDPGTTIMGFGLIQVERDTMKLLQLNELQLSKYSNHYLKLSVIFNRTLELI 58
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
++P+E A+E F K+ + LKLG+A+ +A+ + IP++EY P +K A+ G G
Sbjct: 59 DTYKPDELAIEAPFFGKNVQSMLKLGRAQGVAMAAGLSREIPITEYEPKKVKMAITGNGS 118
Query: 121 GDKKQIHMMLKMLMP-ESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
K+Q+ ML+ L+ + K DA D LA+AVCH ++ + +
Sbjct: 119 ASKEQVAKMLQQLLNIKELPKHFDATDGLAVAVCHFFNGGKSQKQQS 165
>gi|114771194|ref|ZP_01448614.1| Holliday junction resolvase [alpha proteobacterium HTCC2255]
gi|114548119|gb|EAU51006.1| Holliday junction resolvase [alpha proteobacterium HTCC2255]
Length = 170
Score = 170 bits (432), Expect = 4e-41, Method: Composition-based stats.
Identities = 88/155 (56%), Positives = 110/155 (70%), Gaps = 1/155 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+R++GIDPGLR GWG+VDV G + ++ G S LA RL +L+ LTDVIK ++
Sbjct: 1 MRVLGIDPGLRNLGWGVVDVLGPKITHIADGVCKSSTGT-LAERLLELHNQLTDVIKKYK 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P +AVE+ FVNKD TLKLGQAR I +L+PA A + VSEYAPNTIKK V+GVGH DKK
Sbjct: 60 PTTSAVEKTFVNKDGAGTLKLGQARGICLLAPAQAGLDVSEYAPNTIKKVVVGVGHADKK 119
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHAN 159
Q+ M++M P F G DA DALAIA+CHA+HA
Sbjct: 120 QVEHMVQMQFPGMSFVGPDAVDALAIALCHAHHAQ 154
>gi|121602663|ref|YP_988489.1| Holliday junction resolvase [Bartonella bacilliformis KC583]
gi|166231580|sp|A1UR86|RUVC_BARBK RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|120614840|gb|ABM45441.1| crossover junction endodeoxyribonuclease RuvC [Bartonella
bacilliformis KC583]
Length = 167
Score = 170 bits (432), Expect = 5e-41, Method: Composition-based stats.
Identities = 104/167 (62%), Positives = 132/167 (79%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M + IRIIGIDPGLRRTGWGI+D G+++ FV+SGT+ S + +LA RL QL++GL++V+
Sbjct: 1 MVEKIRIIGIDPGLRRTGWGIIDFLGNHMHFVASGTLHSDAQLNLASRLHQLHKGLSEVV 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
+ P EAAVE VFVNKDA ATLKLGQARAIA+L PA A +PV EYAPNTIKK+VIGVGH
Sbjct: 61 HQFMPHEAAVEHVFVNKDATATLKLGQARAIALLVPAQAGLPVFEYAPNTIKKSVIGVGH 120
Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
G K+QIHMM+K L+P + F G DAADALA+ +CH+ H + ++I
Sbjct: 121 GAKEQIHMMVKRLLPRAEFDGHDAADALALVICHSAHRTNFAHRIKG 167
>gi|281420104|ref|ZP_06251103.1| crossover junction endodeoxyribonuclease RuvC [Prevotella copri DSM
18205]
gi|281405904|gb|EFB36584.1| crossover junction endodeoxyribonuclease RuvC [Prevotella copri DSM
18205]
Length = 191
Score = 170 bits (431), Expect = 6e-41, Method: Composition-based stats.
Identities = 54/157 (34%), Positives = 83/157 (52%), Gaps = 3/157 (1%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG G+G++ + G+ V G I RL ++++ +T +I ++ P
Sbjct: 10 IILGIDPGTNVMGYGVIRIIGNKAELVVMGVIDMRKESDPYLRLGKIFDRVTGIIDSYLP 69
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+E A+E F K+ + LKLG+A+ +AI + +P+ EYAP IK A+ G G K+Q
Sbjct: 70 DEMAIEAPFFGKNVQSMLKLGRAQGVAIAAAIHHSVPIHEYAPLKIKMAITGQGQASKEQ 129
Query: 126 IHMMLKMLMPE---SFFKGKDAADALAIAVCHAYHAN 159
+ ML+ L+ K DA DAL A CH N
Sbjct: 130 VAGMLQRLLHIQQDEMPKFMDATDALGAAYCHFLQMN 166
>gi|332292054|ref|YP_004430663.1| crossover junction endodeoxyribonuclease RuvC [Krokinobacter
diaphorus 4H-3-7-5]
gi|332170140|gb|AEE19395.1| crossover junction endodeoxyribonuclease RuvC [Krokinobacter
diaphorus 4H-3-7-5]
Length = 184
Score = 170 bits (431), Expect = 6e-41, Method: Composition-based stats.
Identities = 53/160 (33%), Positives = 85/160 (53%), Gaps = 1/160 (0%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M I+GIDPG G+G++ V G + F+ ++ +L ++E +I
Sbjct: 1 MADERIILGIDPGTTIMGFGLIKVVGKKMEFMLLNELLLQKYSDPYVKLKLIFERTIQLI 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
+ P+E A+E F K+ + LKLG+A+ +A+ + IP++EY P IK AV G G+
Sbjct: 61 DTYHPDEIAIEAPFFGKNVQSMLKLGRAQGVAMAAGLSREIPITEYLPKKIKMAVTGNGN 120
Query: 121 GDKKQIHMMLKMLMPESF-FKGKDAADALAIAVCHAYHAN 159
K+Q+ ML+ L+ K D+ D LA AVCH Y++
Sbjct: 121 ASKEQVARMLQSLLKLKTLPKNLDSTDGLAAAVCHYYNSG 160
>gi|300309760|ref|YP_003773852.1| Holliday junction resolvasome, endonuclease subunit [Herbaspirillum
seropedicae SmR1]
gi|300072545|gb|ADJ61944.1| Holliday junction resolvasome, endonuclease subunit protein
[Herbaspirillum seropedicae SmR1]
Length = 180
Score = 170 bits (431), Expect = 6e-41, Method: Composition-based stats.
Identities = 63/155 (40%), Positives = 96/155 (61%), Gaps = 1/155 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
++I+GIDPGLR TG+G++ G+ L +++SGTI + L RL + + +V+K++
Sbjct: 1 MKILGIDPGLRTTGFGVIHKQGNTLSYIASGTIKTP-DGDLPSRLKVILASVGEVVKSYT 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ AA+E+VFVN + +TL LGQAR AI + A + V+EY +K+AV G G K
Sbjct: 60 PDCAAIEKVFVNVNPHSTLLLGQARGAAICALVAADLAVAEYTALQVKQAVAGHGRAQKA 119
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHAN 159
Q+ M+ L+ G DAADAL +A+CHA+
Sbjct: 120 QVQEMVARLLKLPGLPGTDAADALGVAICHAHGGG 154
>gi|284037130|ref|YP_003387060.1| crossover junction endodeoxyribonuclease RuvC [Spirosoma linguale
DSM 74]
gi|283816423|gb|ADB38261.1| crossover junction endodeoxyribonuclease RuvC [Spirosoma linguale
DSM 74]
Length = 182
Score = 170 bits (430), Expect = 7e-41, Method: Composition-based stats.
Identities = 58/154 (37%), Positives = 87/154 (56%), Gaps = 1/154 (0%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
I+G+DPG G+GI+ V G + + G + + +L +LYE + +I + P+
Sbjct: 2 ILGVDPGTMIAGYGIISVKGGTMSMIQYGVVQLSKYTTYQLKLQKLYETILRLIDEYHPD 61
Query: 67 EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
E A+E F K+ A LKLG+A+ + + + IP+ EYAP IK++V G G+ K Q+
Sbjct: 62 EMAIEDPFFGKNVQAMLKLGRAQGVVMAAALSRNIPIVEYAPRRIKQSVTGNGNASKDQV 121
Query: 127 HMMLKMLMPES-FFKGKDAADALAIAVCHAYHAN 159
M+ L+ E K DA DALAIAVCH +H N
Sbjct: 122 SQMVGHLLKEDLDPKFFDATDALAIAVCHHFHEN 155
>gi|116748438|ref|YP_845125.1| crossover junction endodeoxyribonuclease RuvC [Syntrophobacter
fumaroxidans MPOB]
gi|116697502|gb|ABK16690.1| Holliday junction endonuclease RuvC [Syntrophobacter fumaroxidans
MPOB]
Length = 183
Score = 170 bits (430), Expect = 8e-41, Method: Composition-based stats.
Identities = 68/158 (43%), Positives = 91/158 (57%)
Query: 4 SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
IR IG+DPG R TG+GIV+ G L V++G I L RL +YE LT VI
Sbjct: 17 MIRTIGVDPGSRFTGYGIVEGEGTRLLHVANGVIRLSGELPLTQRLKLIYEQLTRVIAEV 76
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
PE A+E +F K+ + L+LGQAR AIL+ A +P+ EY+ +KKAV+G G K
Sbjct: 77 GPECMAIEDIFFAKNVKSALRLGQARGAAILAGVNAGLPIYEYSALEVKKAVVGYGKAGK 136
Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSG 161
Q+ M++ L S +AADALA+AVCH + S
Sbjct: 137 DQVGEMVRCLFRLSQPIDPNAADALAVAVCHVNTSGSR 174
>gi|91786981|ref|YP_547933.1| Holliday junction resolvase [Polaromonas sp. JS666]
gi|123165277|sp|Q12EK7|RUVC_POLSJ RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|91696206|gb|ABE43035.1| crossover junction endodeoxyribonuclease RuvC [Polaromonas sp.
JS666]
Length = 182
Score = 170 bits (430), Expect = 8e-41, Method: Composition-based stats.
Identities = 66/158 (41%), Positives = 99/158 (62%), Gaps = 2/158 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCV--RQSLAFRLCQLYEGLTDVIKN 62
+RI+GIDPGL+ G+G+V+V G +L +V+SGTI + R L RL L++G+ +V++
Sbjct: 1 MRILGIDPGLQIAGFGVVEVDGPHLHYVASGTIKTTHMVRGDLPARLKVLFDGVREVVQR 60
Query: 63 WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
++P+ A+VE VF N + ATL LGQAR I + + + V+EY +KKAV G G
Sbjct: 61 YQPDMASVEIVFTNVNPQATLLLGQARGACITALVSSDLTVAEYTALQMKKAVAGYGKAG 120
Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
K ++ M+ L+ GKDAADAL +A+ HA+ S
Sbjct: 121 KAEVQQMVMRLLKLPALPGKDAADALGLAITHAHAGRS 158
>gi|152986043|ref|YP_001349892.1| Holliday junction resolvase [Pseudomonas aeruginosa PA7]
gi|166233285|sp|A6VA07|RUVC_PSEA7 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|150961201|gb|ABR83226.1| crossover junction endodeoxyribonuclease RuvC [Pseudomonas
aeruginosa PA7]
Length = 174
Score = 170 bits (430), Expect = 8e-41, Method: Composition-based stats.
Identities = 61/154 (39%), Positives = 94/154 (61%), Gaps = 1/154 (0%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
I+GIDPG R TG+G+V +V+SG I + L RL ++ + +VI+ P
Sbjct: 4 ILGIDPGSRITGFGVVRETARGCEYVASGCIRTGNG-PLHERLQVVFRSVREVIRTHGPT 62
Query: 67 EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
++EQVF+ ++A + LKLGQAR AI++ + V+EY + +K+AV+G G DK+Q+
Sbjct: 63 TLSIEQVFMARNADSALKLGQARGAAIVAAMEEGLSVAEYTASQVKQAVVGTGGADKQQV 122
Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
MM+ L+ + DA+DALAIA+CHA+ S
Sbjct: 123 QMMVMHLLKLTQKPQIDASDALAIALCHAHTQQS 156
>gi|171057222|ref|YP_001789571.1| Holliday junction resolvase [Leptothrix cholodnii SP-6]
gi|170774667|gb|ACB32806.1| crossover junction endodeoxyribonuclease RuvC [Leptothrix cholodnii
SP-6]
Length = 183
Score = 170 bits (430), Expect = 8e-41, Method: Composition-based stats.
Identities = 62/157 (39%), Positives = 97/157 (61%), Gaps = 2/157 (1%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQ--SLAFRLCQLYEGLTDVIKNW 63
RI+GIDPGL TG+G++DV G L +V+SGT+ + L R+ ++EG+ +V+ +
Sbjct: 3 RILGIDPGLATTGFGVIDVEGQALRYVASGTVHTREADIGDLPGRIKLIFEGVREVMATY 62
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
+P A++E VFVN + +TL LGQAR A+ + + V+EY +KKAV+G GH K
Sbjct: 63 QPTCASIEIVFVNVNPQSTLLLGQARGAALAALVTGGLAVTEYTALQMKKAVVGSGHARK 122
Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
+Q+ M+ L+ +DA+DAL +A+ HA+ S
Sbjct: 123 EQVQEMVMRLLQLPGRPNQDASDALGLAITHAHAGGS 159
>gi|119383448|ref|YP_914504.1| crossover junction endodeoxyribonuclease RuvC [Paracoccus
denitrificans PD1222]
gi|166233277|sp|A1AZW4|RUVC_PARDP RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|119373215|gb|ABL68808.1| crossover junction endodeoxyribonuclease RuvC [Paracoccus
denitrificans PD1222]
Length = 164
Score = 170 bits (430), Expect = 9e-41, Method: Composition-based stats.
Identities = 85/164 (51%), Positives = 110/164 (67%), Gaps = 1/164 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
++IIGIDPGLR GWG++ V G L + +G + S L RL LY GL VI
Sbjct: 1 MKIIGIDPGLRNMGWGVIAVEGPRLRHLDNGIVHSEAG-DLGPRLAALYRGLCAVIVRHA 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ AAVEQ FVNKDA+ TLKLGQAR IA+L+PA A + + EYAPN +KKAV+GVGH K+
Sbjct: 60 PDAAAVEQTFVNKDALGTLKLGQARGIALLAPAEAGLEIGEYAPNAVKKAVVGVGHAAKE 119
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
QI M++ ++P F G DAADALA+A+CHA+H +I +
Sbjct: 120 QIQHMVRFMLPGVEFAGPDAADALAVAICHAHHLQGRALRIKAS 163
>gi|86146481|ref|ZP_01064804.1| Holliday junction resolvase [Vibrio sp. MED222]
gi|218709099|ref|YP_002416720.1| Holliday junction resolvase [Vibrio splendidus LGP32]
gi|254767488|sp|B7VMI1|RUVC_VIBSL RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|85835744|gb|EAQ53879.1| Holliday junction resolvase [Vibrio sp. MED222]
gi|218322118|emb|CAV18231.1| Crossover junction endodeoxyribonuclease ruvC [Vibrio splendidus
LGP32]
Length = 173
Score = 169 bits (429), Expect = 9e-41, Method: Composition-based stats.
Identities = 64/163 (39%), Positives = 100/163 (61%), Gaps = 2/163 (1%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G +L ++ SG I + ++ L RL Q+Y G++++I ++P
Sbjct: 3 IILGIDPGSRITGYGVIRQNGRHLYYLGSGCIRTSEKE-LPGRLKQIYAGVSEIITQFQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQVF++K+A + LKLGQAR AI++ A +PV EYA IK+AV G G DK
Sbjct: 62 DVFAIEQVFMSKNADSALKLGQARGSAIVAAVNADLPVHEYAARLIKQAVTGNGGADKSM 121
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
+ M+ ++ DAADAL +A+ HA + +A +
Sbjct: 122 VQNMVMSMLKLPAKPQADAADALGVAITHANTNKT-LVALAGK 163
>gi|312897338|ref|ZP_07756764.1| crossover junction endodeoxyribonuclease RuvC [Megasphaera
micronuciformis F0359]
gi|310621556|gb|EFQ05090.1| crossover junction endodeoxyribonuclease RuvC [Megasphaera
micronuciformis F0359]
Length = 166
Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats.
Identities = 59/157 (37%), Positives = 91/157 (57%), Gaps = 1/157 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+R +GIDPG G+G+VD G L V+ GTI + +S A RL +YEGL ++ + ++
Sbjct: 1 MRAMGIDPGTAICGFGVVDSDGSRLRPVTYGTIQTTPDRSDADRLVTIYEGLHELYEKYK 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ VEQ+F N++ + +GQAR I +L+ A IP+ E+ P +K+ V G G K+
Sbjct: 61 PDIIGVEQLFFNRNVTTAITVGQARGIILLTAKQAGIPLLEFNPLQVKQGVTGYGRATKE 120
Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHANS 160
Q+ M L+ K DAAD LA+A+ Y ++S
Sbjct: 121 QVIDMTMRLLGIREKIKPDDAADGLAMAIYAVYSSHS 157
>gi|319953519|ref|YP_004164786.1| crossover junction endodeoxyribonuclease ruvc [Cellulophaga
algicola DSM 14237]
gi|319422179|gb|ADV49288.1| Crossover junction endodeoxyribonuclease ruvC [Cellulophaga
algicola DSM 14237]
Length = 184
Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats.
Identities = 50/160 (31%), Positives = 84/160 (52%), Gaps = 1/160 (0%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M I+GIDPG G+G++ V + F+ ++ +L ++E ++I
Sbjct: 1 MANEKIILGIDPGTTIMGFGLIKVVNKKMEFLQMNELLLQKYNDPYVKLKLIFERTIELI 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
+ P+E A+E F K+ + LKLG+A+ +A+ + IP++EY P IK A+ G G+
Sbjct: 61 DTYHPDEIAIEAPFFGKNVQSMLKLGRAQGVAMAAGLSREIPITEYLPKKIKMAITGNGN 120
Query: 121 GDKKQIHMMLKMLMPESF-FKGKDAADALAIAVCHAYHAN 159
K+Q+ ML+ ++ K D+ D LA AVCH Y+
Sbjct: 121 ASKEQVAKMLQSMLGLKTLPKNLDSTDGLAAAVCHFYNEG 160
>gi|330968892|gb|EGH68958.1| Holliday junction resolvase [Pseudomonas syringae pv. aceris str.
M302273PT]
Length = 174
Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats.
Identities = 62/154 (40%), Positives = 96/154 (62%), Gaps = 1/154 (0%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
I+GIDPG R TG+G+V G +V+SG I + + L RL +Y G+ +VIK + P
Sbjct: 4 ILGIDPGSRITGYGVVRDTGRGCVYVASGCIRTGSGE-LHERLQIVYRGVREVIKTYEPV 62
Query: 67 EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
+E+VF+ ++A + LKLGQAR I++ A + ++EY +K+AV G G +K+Q+
Sbjct: 63 TMGIEKVFMARNADSALKLGQARGAVIVAGAEEALEIAEYTATQVKQAVAGTGGANKEQV 122
Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
MM+ L+ + DA+DALAIA+CHA+ +S
Sbjct: 123 MMMVMHLLKLTQKPQIDASDALAIALCHAHTRSS 156
>gi|121606298|ref|YP_983627.1| Holliday junction resolvase [Polaromonas naphthalenivorans CJ2]
gi|166233279|sp|A1VSS8|RUVC_POLNA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|120595267|gb|ABM38706.1| crossover junction endodeoxyribonuclease RuvC [Polaromonas
naphthalenivorans CJ2]
Length = 182
Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats.
Identities = 67/164 (40%), Positives = 103/164 (62%), Gaps = 3/164 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCV--RQSLAFRLCQLYEGLTDVIKN 62
+ I+GIDPGL+ TG+G+VD+ G +L +V+SGTI + + L RL L++G+ +V++
Sbjct: 1 MHILGIDPGLQITGFGVVDMDGPHLRYVASGTIKTTHLDTKDLPGRLKVLFDGVREVVQR 60
Query: 63 WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
++PE A+VE VFVN + ATL LGQAR I + + + V+EY +KKAV G G
Sbjct: 61 YQPEVASVEIVFVNVNPQATLLLGQARGACITALVSSDLAVAEYTALQMKKAVAGYGKAG 120
Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
K ++ M+ L+ GKDAADAL +A+ HA+ + ++A
Sbjct: 121 KAEVQQMVMRLLKLPSLPGKDAADALGLAITHAH-VGTAMARLA 163
>gi|300775852|ref|ZP_07085712.1| crossover junction endoribonuclease subunit C [Chryseobacterium
gleum ATCC 35910]
gi|300505402|gb|EFK36540.1| crossover junction endoribonuclease subunit C [Chryseobacterium
gleum ATCC 35910]
Length = 184
Score = 169 bits (428), Expect = 1e-40, Method: Composition-based stats.
Identities = 53/162 (32%), Positives = 89/162 (54%), Gaps = 2/162 (1%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M I+GIDPG G+GI+ V + VS ++ + +L ++E +I
Sbjct: 1 MISEKIILGIDPGTTVMGFGIISVKKGKMELVSIHELILKKYPNHETKLKYIFERTLSLI 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
+ P+E A+E F K+ + LKLG+A+ +A+ + IP++EY+P IK A+ G G+
Sbjct: 61 DEFHPDEVALEAPFYGKNVQSMLKLGRAQGVAMAASLYRNIPITEYSPKKIKMAITGNGN 120
Query: 121 GDKKQIHMMLKMLMPESFFKG--KDAADALAIAVCHAYHANS 160
K+Q+ ML+ L+ F DA+D LA+AVCH +++ +
Sbjct: 121 ASKEQVAGMLQNLLKLKEFPTKYLDASDGLAVAVCHHFNSGT 162
>gi|163787294|ref|ZP_02181741.1| Holliday junction resolvase [Flavobacteriales bacterium ALC-1]
gi|159877182|gb|EDP71239.1| Holliday junction resolvase [Flavobacteriales bacterium ALC-1]
Length = 184
Score = 169 bits (428), Expect = 1e-40, Method: Composition-based stats.
Identities = 52/160 (32%), Positives = 87/160 (54%), Gaps = 1/160 (0%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M K I+GIDPG G+G++ V G + F+ ++ +L ++E ++I
Sbjct: 1 MSKEKIILGIDPGTTIMGFGLIKVVGKKMEFMQLNELMLKKYDDHYLKLKLIFERTVELI 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
+ P+E A+E F K+ + LKLG+A+ +A+ + +P++EYAP IK A+ G G+
Sbjct: 61 DTYHPDEIAIEAPFFGKNVQSMLKLGRAQGVAMAAGLSREVPITEYAPKKIKMAITGNGN 120
Query: 121 GDKKQIHMMLKMLMPESF-FKGKDAADALAIAVCHAYHAN 159
K+Q+ ML+ ++ K D+ D LA AVCH Y+
Sbjct: 121 ASKEQVAKMLQGMLGLKELPKNLDSMDGLAAAVCHFYNQG 160
>gi|89889363|ref|ZP_01200874.1| crossover junction endodeoxyribonuclease ruvC [Flavobacteria
bacterium BBFL7]
gi|89517636|gb|EAS20292.1| crossover junction endodeoxyribonuclease ruvC [Flavobacteria
bacterium BBFL7]
Length = 184
Score = 169 bits (428), Expect = 1e-40, Method: Composition-based stats.
Identities = 53/160 (33%), Positives = 87/160 (54%), Gaps = 1/160 (0%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M I+GIDPG G+G++ V G+ + F+ + +L +++E ++I
Sbjct: 1 MATEKIILGIDPGTALMGFGVIKVVGNKMSFLQMNELDLRKYTDHYVKLRKIFERTIELI 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
P+E A+E F K+ + LKLG+A+ +A+ + IPV+EYAP IK+++ G G
Sbjct: 61 DTHHPDEIALEAPFFGKNVQSMLKLGRAQGVAMAAGLSRDIPVTEYAPRKIKQSITGKGT 120
Query: 121 GDKKQIHMMLKMLMP-ESFFKGKDAADALAIAVCHAYHAN 159
K+Q+ ML+ L+ + K D D LA AVCH Y++
Sbjct: 121 ASKEQVAKMLQNLLGFKEMPKNLDMTDGLAAAVCHFYNSG 160
>gi|304383181|ref|ZP_07365654.1| crossover junction endoribonuclease subunit C [Prevotella marshii
DSM 16973]
gi|304335652|gb|EFM01909.1| crossover junction endoribonuclease subunit C [Prevotella marshii
DSM 16973]
Length = 187
Score = 169 bits (428), Expect = 1e-40, Method: Composition-based stats.
Identities = 57/163 (34%), Positives = 89/163 (54%), Gaps = 4/163 (2%)
Query: 1 MRKSIR-IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDV 59
M K+ R I+GIDPG G+G++ + + +S G I RL +++E +T +
Sbjct: 1 MEKAERVILGIDPGTNVMGYGVIGITNNKAHMISMGVIDMRKMADPYLRLGKIFERVTGI 60
Query: 60 IKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVG 119
I+++ P+E A+E F K+ + LKLG+A+ +AI + IP+ EYAP IK A+ G G
Sbjct: 61 IESFLPDELAIEAPFFGKNVQSMLKLGRAQGVAIAAAIRRDIPIHEYAPLKIKVAITGQG 120
Query: 120 HGDKKQIHMMLKMLMPE---SFFKGKDAADALAIAVCHAYHAN 159
K+Q+ ML+ L+ + DA DALA A CH +
Sbjct: 121 QASKQQVADMLRRLLNLHKEELPRFMDATDALAAAYCHFLQSG 163
>gi|157738529|ref|YP_001491213.1| Holliday junction resolvase [Arcobacter butzleri RM4018]
gi|315635400|ref|ZP_07890666.1| crossover junction endoribonuclease subunit C [Arcobacter butzleri
JV22]
gi|167012676|sp|A8EX70|RUVC_ARCB4 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|157700383|gb|ABV68543.1| crossover junction endodeoxyribonuclease RuvC [Arcobacter butzleri
RM4018]
gi|315480158|gb|EFU70825.1| crossover junction endoribonuclease subunit C [Arcobacter butzleri
JV22]
Length = 154
Score = 169 bits (428), Expect = 1e-40, Method: Composition-based stats.
Identities = 50/154 (32%), Positives = 81/154 (52%), Gaps = 2/154 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
++I+GIDPG R G+ IV+ G +L + +G I + L ++ ++ EGL + KN +
Sbjct: 1 MKILGIDPGTRNCGYAIVEKNGRDLKLIEAGLIK-IKTKILQEQIVEMTEGLDLLFKNHK 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
++ ++E +F + +KL Q R L SEY P +K+AV G G K+
Sbjct: 60 IDQVSIEDMFYAFNPKTVIKLAQFRGAISLKILQEFGNFSEYTPLQVKQAVTGNGKATKE 119
Query: 125 QIHMMLKMLMP-ESFFKGKDAADALAIAVCHAYH 157
Q+ M+K L+ + K D DA+AIA+ HA
Sbjct: 120 QVAFMVKRLLNVKKEIKPLDITDAIAIALTHAQR 153
>gi|66044656|ref|YP_234497.1| Holliday junction resolvase [Pseudomonas syringae pv. syringae
B728a]
gi|75502954|sp|Q4ZWL3|RUVC_PSEU2 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|63255363|gb|AAY36459.1| Crossover junction endodeoxyribonuclease RuvC [Pseudomonas syringae
pv. syringae B728a]
Length = 174
Score = 169 bits (428), Expect = 2e-40, Method: Composition-based stats.
Identities = 63/154 (40%), Positives = 97/154 (62%), Gaps = 1/154 (0%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
I+GIDPG R TG+G+V G +V+SG I + + L RL +Y G+ +VIK + P
Sbjct: 4 ILGIDPGSRITGYGVVRDTGRGCVYVASGCIRTGSGE-LHERLQIVYRGVREVIKTYEPV 62
Query: 67 EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
+E+VF+ ++A + LKLGQAR AI++ A + ++EY +K+AV G G +K+Q+
Sbjct: 63 TMGIEKVFMARNADSALKLGQARGAAIVAGAEEALEIAEYTATQVKQAVAGTGGANKEQV 122
Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
MM+ L+ + DA+DALAIA+CHA+ +S
Sbjct: 123 MMMVMHLLKLTQKPQIDASDALAIALCHAHTRSS 156
>gi|84388517|ref|ZP_00991064.1| Holliday junction resolvase [Vibrio splendidus 12B01]
gi|84377066|gb|EAP93937.1| Holliday junction resolvase [Vibrio splendidus 12B01]
Length = 173
Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats.
Identities = 64/163 (39%), Positives = 99/163 (60%), Gaps = 2/163 (1%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G +L ++ SG I + ++ L RL Q+Y G++++I ++P
Sbjct: 3 IILGIDPGSRITGYGVIRQNGRHLYYLGSGCIRTSEKE-LPGRLKQIYAGVSEIITQFQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQVF+ K+A + LKLGQAR AI++ A +PV EYA IK+AV G G DK
Sbjct: 62 DVFAIEQVFMAKNADSALKLGQARGSAIVAAVNADLPVHEYAARLIKQAVTGNGGADKSM 121
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
+ M+ ++ DAADAL +A+ HA + +A +
Sbjct: 122 VQNMVMSMLKLPAKPQADAADALGVAITHANTNKT-LVALAGK 163
>gi|227538683|ref|ZP_03968732.1| crossover junction endodeoxyribonuclease [Sphingobacterium
spiritivorum ATCC 33300]
gi|227241602|gb|EEI91617.1| crossover junction endodeoxyribonuclease [Sphingobacterium
spiritivorum ATCC 33300]
Length = 189
Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats.
Identities = 53/159 (33%), Positives = 89/159 (55%), Gaps = 1/159 (0%)
Query: 2 RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
K I+GIDPG G+G++ G + +S G I A +L ++++ + +I+
Sbjct: 6 TKERIILGIDPGTVVLGYGLLKETGKKISLISLGVIKMGHLDDHALKLQRIFKKTSALIE 65
Query: 62 NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
++P+ A+E F K+ LKLG+A+ +A+ + IP+ EY+P IK++V G G+
Sbjct: 66 EYKPDCVALEAPFYGKNIQVMLKLGRAQGVAMAAALNHDIPIFEYSPRKIKQSVTGNGNA 125
Query: 122 DKKQIHMMLKMLMP-ESFFKGKDAADALAIAVCHAYHAN 159
K+Q+ MLK L+ + DA D LA+AVCH++ N
Sbjct: 126 TKEQVAAMLKTLLSFNETPEFLDATDGLAVAVCHSFQQN 164
>gi|300770216|ref|ZP_07080095.1| crossover junction endoribonuclease subunit C [Sphingobacterium
spiritivorum ATCC 33861]
gi|300762692|gb|EFK59509.1| crossover junction endoribonuclease subunit C [Sphingobacterium
spiritivorum ATCC 33861]
Length = 189
Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats.
Identities = 54/159 (33%), Positives = 89/159 (55%), Gaps = 1/159 (0%)
Query: 2 RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
K I+GIDPG G+G+V G + +S G I A +L ++++ + +I+
Sbjct: 6 AKERIILGIDPGTVVLGYGLVKETGKKISLISLGVIKMGHLDDHALKLQRIFKKTSALIE 65
Query: 62 NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
++P+ A+E F K+ LKLG+A+ +A+ + IP+ EY+P IK++V G G+
Sbjct: 66 EYKPDCVALEAPFYGKNIQVMLKLGRAQGVAMAAALNHDIPIFEYSPRKIKQSVTGNGNA 125
Query: 122 DKKQIHMMLKMLMP-ESFFKGKDAADALAIAVCHAYHAN 159
K+Q+ MLK L+ + DA D LA+AVCH++ N
Sbjct: 126 TKEQVAAMLKTLLSFNETPEFLDATDGLAVAVCHSFQQN 164
>gi|148977431|ref|ZP_01814031.1| Holliday junction resolvase [Vibrionales bacterium SWAT-3]
gi|145963383|gb|EDK28648.1| Holliday junction resolvase [Vibrionales bacterium SWAT-3]
Length = 173
Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats.
Identities = 64/163 (39%), Positives = 99/163 (60%), Gaps = 2/163 (1%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G +L ++ SG I + ++ L RL Q+Y G++++I ++P
Sbjct: 3 IILGIDPGSRITGYGVIRQNGRHLYYLGSGCIRTSEKE-LPGRLKQIYAGVSEIITQFQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQVF+ K+A + LKLGQAR AI++ A +PV EYA IK+AV G G DK
Sbjct: 62 DVFAIEQVFMAKNADSALKLGQARGSAIVAAVNADLPVHEYAARLIKQAVTGNGGADKSM 121
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
+ M+ ++ DAADAL +A+ HA + +A +
Sbjct: 122 VQNMVMSMLKLPAKPQADAADALGVAITHANTNKT-LIALAGK 163
>gi|319791676|ref|YP_004153316.1| crossover junction endodeoxyribonuclease ruvc [Variovorax paradoxus
EPS]
gi|315594139|gb|ADU35205.1| crossover junction endodeoxyribonuclease RuvC [Variovorax paradoxus
EPS]
Length = 182
Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats.
Identities = 66/166 (39%), Positives = 97/166 (58%), Gaps = 3/166 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSC--VRQSLAFRLCQLYEGLTDVIKN 62
+RI+GIDPGL TG+G+VD G L +V+SGTI + +L RL L++G+ ++
Sbjct: 1 MRILGIDPGLLTTGFGVVDADGHALRYVASGTISTRHLGSGNLPARLKVLFDGIAEITAR 60
Query: 63 WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
++P+ +AVE +FVN + +TL LGQAR + S + + V+EY +KKAV G G
Sbjct: 61 YQPDASAVEIIFVNVNPQSTLLLGQARGACVTSLVNSNLTVAEYTALQMKKAVAGHGQAA 120
Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
K Q+ M+K L+ G DAADAL IA+ HA ++A
Sbjct: 121 KAQVQEMVKRLLDLPGLPGADAADALGIAITHA-QVGRSMARLAEA 165
>gi|332530370|ref|ZP_08406315.1| Holliday junction resolvase [Hylemonella gracilis ATCC 19624]
gi|332040181|gb|EGI76562.1| Holliday junction resolvase [Hylemonella gracilis ATCC 19624]
Length = 179
Score = 168 bits (426), Expect = 2e-40, Method: Composition-based stats.
Identities = 62/163 (38%), Positives = 100/163 (61%), Gaps = 3/163 (1%)
Query: 8 IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQ--SLAFRLCQLYEGLTDVIKNWRP 65
+GIDPGLR TG+G+++ G +L +V+SGTI + + +L RL L++G+T+V+ ++P
Sbjct: 1 MGIDPGLRTTGFGVIEAQGQHLRYVASGTISTAKEEQGNLPARLKVLFDGITEVVTRYQP 60
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+AAVE VFVN + +TL LGQAR + + ++PV+EY +K+AV G G K +
Sbjct: 61 TQAAVEIVFVNVNPQSTLLLGQARGACLTALVNCKLPVAEYTALQMKQAVAGHGRAAKAE 120
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
+ M++ L+ G DAADAL +A+ A+ A ++
Sbjct: 121 VQAMVQRLLKLPGLPGPDAADALGLAITQAH-AGLTLARLGEA 162
>gi|116625019|ref|YP_827175.1| crossover junction endodeoxyribonuclease RuvC [Candidatus
Solibacter usitatus Ellin6076]
gi|122252542|sp|Q01TY0|RUVC_SOLUE RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|116228181|gb|ABJ86890.1| crossover junction endodeoxyribonuclease RuvC [Candidatus
Solibacter usitatus Ellin6076]
Length = 166
Score = 168 bits (426), Expect = 2e-40, Method: Composition-based stats.
Identities = 59/157 (37%), Positives = 93/157 (59%), Gaps = 1/157 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+R++G+D G RTGWG++D G V++G I + + RL ++ L +I+
Sbjct: 1 MRVLGVDCGSERTGWGVIDSDGGCHRMVAAGVIRTSPKCPFDRRLLEIGTALRGLIREHT 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
PE AAVE+VF +A LKL R +A+L+ A A + +EY+P +K +V+G G +K
Sbjct: 61 PEFAAVEEVFHAVNAKTALKLAHVRGVALLTIAEAGVVFAEYSPLEVKMSVVGYGRAEKS 120
Query: 125 QIHMMLKMLMPESF-FKGKDAADALAIAVCHAYHANS 160
Q+ MM++ L+ +DA+DALAIA+CHA H +
Sbjct: 121 QVQMMVQSLLRLPEVIASEDASDALAIAICHATHQAT 157
>gi|284048864|ref|YP_003399203.1| crossover junction endodeoxyribonuclease RuvC [Acidaminococcus
fermentans DSM 20731]
gi|283953085|gb|ADB47888.1| crossover junction endodeoxyribonuclease RuvC [Acidaminococcus
fermentans DSM 20731]
Length = 165
Score = 168 bits (426), Expect = 2e-40, Method: Composition-based stats.
Identities = 51/153 (33%), Positives = 84/153 (54%), Gaps = 1/153 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ +GIDPG G+G+V + L V G + + RL ++YE LTD+I +
Sbjct: 1 MLALGIDPGTAICGYGLVRLERSRLIPVHYGAVFTDKDMLPERRLNKIYEELTDLIDRYH 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ +VE++F N++ + +G+AR + +L+ A A IPV Y P +K+A+ G G +K+
Sbjct: 61 PDFMSVEKLFFNRNVTTAIAVGEARGVILLTAARAGIPVYGYTPIQVKQAITGTGRANKE 120
Query: 125 QIHMMLKMLMPESF-FKGKDAADALAIAVCHAY 156
Q+ M++ L+ K D ADALAI +
Sbjct: 121 QVTYMVQKLLHIEEKPKPDDVADALAIGITGLN 153
>gi|15596162|ref|NP_249656.1| Holliday junction resolvase [Pseudomonas aeruginosa PAO1]
gi|116048890|ref|YP_792309.1| Holliday junction resolvase [Pseudomonas aeruginosa UCBPP-PA14]
gi|218893064|ref|YP_002441933.1| Holliday junction resolvase [Pseudomonas aeruginosa LESB58]
gi|254239313|ref|ZP_04932636.1| Holliday junction resolvase RuvC [Pseudomonas aeruginosa C3719]
gi|254245248|ref|ZP_04938570.1| Holliday junction resolvase RuvC [Pseudomonas aeruginosa 2192]
gi|2498881|sp|Q51424|RUVC_PSEAE RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|122257997|sp|Q02IC7|RUVC_PSEAB RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|226725475|sp|B7UXW7|RUVC_PSEA8 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|9946872|gb|AAG04354.1|AE004530_7 Holliday junction resolvase RuvC [Pseudomonas aeruginosa PAO1]
gi|1183840|dbj|BAA11817.1| Holliday junction specific endonuclease [Pseudomonas aeruginosa]
gi|115584111|gb|ABJ10126.1| Holliday junction resolvase RuvC [Pseudomonas aeruginosa
UCBPP-PA14]
gi|126171244|gb|EAZ56755.1| Holliday junction resolvase RuvC [Pseudomonas aeruginosa C3719]
gi|126198626|gb|EAZ62689.1| Holliday junction resolvase RuvC [Pseudomonas aeruginosa 2192]
gi|218773292|emb|CAW29104.1| Holliday junction resolvase RuvC [Pseudomonas aeruginosa LESB58]
Length = 174
Score = 168 bits (426), Expect = 2e-40, Method: Composition-based stats.
Identities = 61/154 (39%), Positives = 94/154 (61%), Gaps = 1/154 (0%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
I+GIDPG R TG+G+V +V+SG I + L RL ++ + +VI+ P
Sbjct: 4 ILGIDPGSRITGFGVVRETARGCEYVASGCIRTGNG-PLHERLHVVFRSVREVIRTHGPT 62
Query: 67 EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
++EQVF+ ++A + LKLGQAR AI++ + V+EY + +K+AV+G G DK+Q+
Sbjct: 63 ALSIEQVFMARNADSALKLGQARGAAIVAAMEEGLSVAEYTASQVKQAVVGTGGADKQQV 122
Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
MM+ L+ + DA+DALAIA+CHA+ S
Sbjct: 123 QMMVMHLLKLTQKPQIDASDALAIALCHAHTQQS 156
>gi|229592302|ref|YP_002874421.1| Holliday junction resolvase [Pseudomonas fluorescens SBW25]
gi|259495691|sp|C3JYS9|RUVC_PSEFS RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|229364168|emb|CAY51823.1| crossover junction endodeoxyribonuclease [Pseudomonas fluorescens
SBW25]
Length = 174
Score = 168 bits (426), Expect = 2e-40, Method: Composition-based stats.
Identities = 62/154 (40%), Positives = 98/154 (63%), Gaps = 1/154 (0%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
I+GIDPG R TG+G+V +V+SG I + + LA RL +Y G+ +VI+ + P
Sbjct: 4 ILGIDPGSRITGFGVVQQTPRGCVYVASGCIRTGAGE-LAERLQIVYRGVREVIQTYGPV 62
Query: 67 EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
+E+VF+ K+A + LKLGQAR AI++ A + ++EY +K+AV+G G +K+Q+
Sbjct: 63 TMGIEKVFMAKNADSALKLGQARGAAIVAGAEEGMEIAEYTATQVKQAVVGTGAANKEQV 122
Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
MM+ ++ + DA+DALAIA+CHA+ +S
Sbjct: 123 QMMVMHMLKLTSKPQIDASDALAIAICHAHTRSS 156
>gi|260576657|ref|ZP_05844644.1| crossover junction endodeoxyribonuclease RuvC [Rhodobacter sp. SW2]
gi|259021142|gb|EEW24451.1| crossover junction endodeoxyribonuclease RuvC [Rhodobacter sp. SW2]
Length = 206
Score = 168 bits (426), Expect = 3e-40, Method: Composition-based stats.
Identities = 85/165 (51%), Positives = 113/165 (68%), Gaps = 1/165 (0%)
Query: 3 KSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
+++R++GIDPGLR GWG++DV G L V++G I LA RL L+ LT+V++
Sbjct: 37 QAVRVLGIDPGLRNLGWGVIDVDGARLTHVANG-ICHSQDGDLAQRLLSLHTQLTEVLRA 95
Query: 63 WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
+ P+ AAVE FVNKDAVATLKLGQAR IA+L PA A + V EYAPN +KK V+GVGH
Sbjct: 96 FAPDAAAVEHTFVNKDAVATLKLGQARGIALLVPAQAGLTVGEYAPNAVKKTVVGVGHAA 155
Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
K Q+ M+++ +P G DAADALA+A+CHA+H S A+
Sbjct: 156 KVQVDHMVRIHLPGVQISGPDAADALAVAICHAHHLQSAGRFEAA 200
>gi|315122881|ref|YP_004063370.1| Holliday junction resolvase [Candidatus Liberibacter solanacearum
CLso-ZC1]
gi|313496283|gb|ADR52882.1| Holliday junction resolvase [Candidatus Liberibacter solanacearum
CLso-ZC1]
Length = 168
Score = 168 bits (426), Expect = 3e-40, Method: Composition-based stats.
Identities = 137/166 (82%), Positives = 148/166 (89%)
Query: 2 RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
RKSIRIIGIDPGLRRTGWGI+D GDNLCFVSSGT+VSC +QSLA RL QLYEGL D+++
Sbjct: 3 RKSIRIIGIDPGLRRTGWGIIDAVGDNLCFVSSGTVVSCAQQSLAVRLRQLYEGLADIMR 62
Query: 62 NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
++ PEEAAVEQVFVNKDAVATLKLGQARAIAILSPAL I VSEYAPNTIKKAVIGVGHG
Sbjct: 63 DFHPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALTGISVSEYAPNTIKKAVIGVGHG 122
Query: 122 DKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
DK+QIHMMLKML+P FKGKDAADALAIAVCHA+H N YKI S
Sbjct: 123 DKRQIHMMLKMLIPGIMFKGKDAADALAIAVCHAHHTNYNRYKIES 168
>gi|312962760|ref|ZP_07777248.1| Crossover junction endodeoxyribonuclease [Pseudomonas fluorescens
WH6]
gi|311282977|gb|EFQ61570.1| Crossover junction endodeoxyribonuclease [Pseudomonas fluorescens
WH6]
Length = 182
Score = 168 bits (426), Expect = 3e-40, Method: Composition-based stats.
Identities = 62/154 (40%), Positives = 98/154 (63%), Gaps = 1/154 (0%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
I+GIDPG R TG+G+V +V+SG I + + LA RL +Y G+ +VI+ + P
Sbjct: 12 ILGIDPGSRITGFGVVQHTPRGCVYVASGCIRTGAGE-LAERLQIVYRGVREVIQTYGPV 70
Query: 67 EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
+E+VF+ K+A + LKLGQAR AI++ A + ++EY +K+AV+G G +K+Q+
Sbjct: 71 TMGIEKVFMAKNADSALKLGQARGAAIVAGAEEGMEIAEYTATQVKQAVVGTGAANKEQV 130
Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
MM+ ++ + DA+DALAIA+CHA+ +S
Sbjct: 131 QMMVMHMLKLTSKPQIDASDALAIAICHAHTRSS 164
>gi|239813937|ref|YP_002942847.1| Holliday junction resolvase [Variovorax paradoxus S110]
gi|259495697|sp|C5CNG5|RUVC_VARPS RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|239800514|gb|ACS17581.1| crossover junction endodeoxyribonuclease RuvC [Variovorax paradoxus
S110]
Length = 182
Score = 168 bits (425), Expect = 3e-40, Method: Composition-based stats.
Identities = 66/166 (39%), Positives = 97/166 (58%), Gaps = 3/166 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSC--VRQSLAFRLCQLYEGLTDVIKN 62
+RI+GIDPGL TG+G+VD G L +V+SGTI + +L RL L++G+ ++
Sbjct: 1 MRILGIDPGLLTTGFGVVDSDGHALSYVASGTISTRHLGSGNLPARLKVLFDGIAEIAAR 60
Query: 63 WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
++P+ +AVE +FVN + +TL LGQAR + S + + V+EY +KKAV G G
Sbjct: 61 YQPDASAVEIIFVNVNPQSTLLLGQARGACVTSLVNSNLSVAEYTALQMKKAVAGHGQAA 120
Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
K Q+ M+K L+ G DAADAL IA+ HA ++A
Sbjct: 121 KAQVQEMVKRLLDLPGLPGADAADALGIAITHA-QVGRSMARLAEA 165
>gi|312892426|ref|ZP_07751921.1| crossover junction endodeoxyribonuclease RuvC [Mucilaginibacter
paludis DSM 18603]
gi|311295210|gb|EFQ72384.1| crossover junction endodeoxyribonuclease RuvC [Mucilaginibacter
paludis DSM 18603]
Length = 227
Score = 168 bits (425), Expect = 3e-40, Method: Composition-based stats.
Identities = 50/153 (32%), Positives = 85/153 (55%), Gaps = 1/153 (0%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
I+GIDPG G+G++ G + +S G + A +L +++E +I ++P+
Sbjct: 34 ILGIDPGTAVMGYGLIKETGPRIELISLGVVKMEHLDDHALKLQRIFEKTLSLIDQYKPD 93
Query: 67 EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
A+E F K+ LKLG+A+ +A+ + +P+ EYAP IK+++ G G+ K+Q+
Sbjct: 94 CMALEAPFYGKNIQVMLKLGRAQGVAMAAALSRNLPICEYAPRKIKQSITGNGNATKEQV 153
Query: 127 HMMLKMLMP-ESFFKGKDAADALAIAVCHAYHA 158
ML+ L+ + DA D LA+AVCHA+
Sbjct: 154 AAMLQTLLKFTETPQFLDATDGLAVAVCHAFQK 186
>gi|71738104|ref|YP_275914.1| Holliday junction resolvase [Pseudomonas syringae pv. phaseolicola
1448A]
gi|237800217|ref|ZP_04588678.1| Holliday junction resolvase [Pseudomonas syringae pv. oryzae str.
1_6]
gi|257487011|ref|ZP_05641052.1| Holliday junction resolvase [Pseudomonas syringae pv. tabaci ATCC
11528]
gi|289626495|ref|ZP_06459449.1| Holliday junction resolvase [Pseudomonas syringae pv. aesculi str.
NCPPB3681]
gi|289650941|ref|ZP_06482284.1| Holliday junction resolvase [Pseudomonas syringae pv. aesculi str.
2250]
gi|110282922|sp|Q48FC3|RUVC_PSE14 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|71558657|gb|AAZ37868.1| crossover junction endodeoxyribonuclease RuvC [Pseudomonas syringae
pv. phaseolicola 1448A]
gi|320323053|gb|EFW79142.1| Holliday junction resolvase [Pseudomonas syringae pv. glycinea str.
B076]
gi|320329675|gb|EFW85664.1| Holliday junction resolvase [Pseudomonas syringae pv. glycinea str.
race 4]
gi|330868611|gb|EGH03320.1| Holliday junction resolvase [Pseudomonas syringae pv. aesculi str.
0893_23]
gi|330877980|gb|EGH12129.1| Holliday junction resolvase [Pseudomonas syringae pv. glycinea str.
race 4]
gi|330892239|gb|EGH24900.1| Holliday junction resolvase [Pseudomonas syringae pv. mori str.
301020]
gi|331009347|gb|EGH89403.1| Holliday junction resolvase [Pseudomonas syringae pv. tabaci ATCC
11528]
gi|331023074|gb|EGI03131.1| Holliday junction resolvase [Pseudomonas syringae pv. oryzae str.
1_6]
Length = 174
Score = 168 bits (425), Expect = 3e-40, Method: Composition-based stats.
Identities = 63/154 (40%), Positives = 97/154 (62%), Gaps = 1/154 (0%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
I+GIDPG R TG+G+V G +V+SG I + + L RL +Y G+ +VIK + P
Sbjct: 4 ILGIDPGSRITGYGVVRDTGRGCVYVASGCIRTGSGE-LHERLQIVYRGVREVIKTYGPV 62
Query: 67 EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
+E+VF+ ++A + LKLGQAR AI++ A + ++EY +K+AV G G +K+Q+
Sbjct: 63 TMGIEKVFMARNADSALKLGQARGAAIVAGAEEALEIAEYTATQVKQAVAGTGGANKEQV 122
Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
MM+ L+ + DA+DALAIA+CHA+ +S
Sbjct: 123 MMMVMHLLKLTQKPQIDASDALAIALCHAHTRSS 156
>gi|227825063|ref|ZP_03989895.1| crossover junction endodeoxyribonuclease ruvC [Acidaminococcus sp.
D21]
gi|226905562|gb|EEH91480.1| crossover junction endodeoxyribonuclease ruvC [Acidaminococcus sp.
D21]
Length = 165
Score = 168 bits (425), Expect = 3e-40, Method: Composition-based stats.
Identities = 57/153 (37%), Positives = 88/153 (57%), Gaps = 1/153 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ +GIDPG G+G+V + L + G+I++ RL +YE LT +IK ++
Sbjct: 1 MLALGIDPGTAICGYGLVKLERSRLIPIHYGSILTDKDMLPEKRLQIIYEALTGLIKEYK 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ +VE++F N++ + +GQAR + +LS A+A +PV EY P IK+A+ G G DKK
Sbjct: 61 PDFMSVEKLFFNRNVTTAIAVGQARGVIVLSAAMADLPVYEYTPIQIKQAITGTGRADKK 120
Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAY 156
Q+ M+ L+ K D ADALAIA+
Sbjct: 121 QVTYMVMKLLHLTEEPKPDDTADALAIAITGLN 153
>gi|126462969|ref|YP_001044083.1| Holliday junction resolvase [Rhodobacter sphaeroides ATCC 17029]
gi|166233290|sp|A3PLU5|RUVC_RHOS1 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|126104633|gb|ABN77311.1| crossover junction endodeoxyribonuclease RuvC [Rhodobacter
sphaeroides ATCC 17029]
Length = 168
Score = 168 bits (425), Expect = 3e-40, Method: Composition-based stats.
Identities = 85/157 (54%), Positives = 110/157 (70%), Gaps = 1/157 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+R++GIDPGLR GWG++DV+G L V++G S LA RL L+ LTDV+ ++
Sbjct: 1 MRVLGIDPGLRNMGWGVIDVSGTRLAHVANGICHSDSG-DLAQRLLSLHGQLTDVLARFQ 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ AAVE FVNKD VATLKLGQAR IA+L PA A + V EYAPN +KK V+GVGH K+
Sbjct: 60 PDTAAVEHTFVNKDGVATLKLGQARGIALLVPAQAGLAVGEYAPNAVKKTVVGVGHAAKE 119
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSG 161
QI M+++ +P G DAADALA+A+CHA+H S
Sbjct: 120 QIQHMVRLHLPGVALAGPDAADALAVAICHAHHVQSS 156
>gi|300728000|ref|ZP_07061378.1| crossover junction endodeoxyribonuclease RuvC [Prevotella bryantii
B14]
gi|299774842|gb|EFI71456.1| crossover junction endodeoxyribonuclease RuvC [Prevotella bryantii
B14]
Length = 232
Score = 168 bits (425), Expect = 3e-40, Method: Composition-based stats.
Identities = 54/158 (34%), Positives = 87/158 (55%), Gaps = 3/158 (1%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG G+G++ V G++ + G I RL ++++ +T +I + P
Sbjct: 13 IILGIDPGTNVMGYGLIKVVGNHASMMVMGVIDMRRESDPYLRLGKIFDRVTGIIDEYLP 72
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+E A+E F K+ + LKLG+A+ +AI + +P+ EYAP IK+A+ G G K+Q
Sbjct: 73 DEMAIEAPFFEKNIQSMLKLGRAQGVAIAAAIHHDVPIHEYAPLKIKQAITGQGQASKEQ 132
Query: 126 IHMMLKMLMPES---FFKGKDAADALAIAVCHAYHANS 160
+ ML+ L+ S K DA DAL A CH +++
Sbjct: 133 VASMLQRLLHISQDDMPKFMDATDALGAAYCHFLQSST 170
>gi|298488210|ref|ZP_07006246.1| Crossover junction endodeoxyribonuclease ruvC [Pseudomonas
savastanoi pv. savastanoi NCPPB 3335]
gi|298157268|gb|EFH98352.1| Crossover junction endodeoxyribonuclease ruvC [Pseudomonas
savastanoi pv. savastanoi NCPPB 3335]
Length = 174
Score = 168 bits (425), Expect = 3e-40, Method: Composition-based stats.
Identities = 63/154 (40%), Positives = 97/154 (62%), Gaps = 1/154 (0%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
I+GIDPG R TG+G+V G +V+SG I + + L RL +Y G+ +VIK + P
Sbjct: 4 ILGIDPGSRITGYGVVRDTGRGCIYVASGCIRTGSGE-LHERLQIVYRGVREVIKTYGPV 62
Query: 67 EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
+E+VF+ ++A + LKLGQAR AI++ A + ++EY +K+AV G G +K+Q+
Sbjct: 63 TMGIEKVFMARNADSALKLGQARGAAIVAGAEEALEIAEYTATQVKQAVAGTGGANKEQV 122
Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
MM+ L+ + DA+DALAIA+CHA+ +S
Sbjct: 123 MMMVMHLLKLTQKPQIDASDALAIALCHAHTRSS 156
>gi|288800187|ref|ZP_06405646.1| crossover junction endodeoxyribonuclease RuvC [Prevotella sp. oral
taxon 299 str. F0039]
gi|288333435|gb|EFC71914.1| crossover junction endodeoxyribonuclease RuvC [Prevotella sp. oral
taxon 299 str. F0039]
Length = 192
Score = 168 bits (425), Expect = 3e-40, Method: Composition-based stats.
Identities = 52/157 (33%), Positives = 80/157 (50%), Gaps = 3/157 (1%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG G+G++ V + ++ G I RL +++ + +I+ + P
Sbjct: 11 IILGIDPGTNIMGYGVIKVVSNKAEMIAMGIIDMRKMTDPYLRLGNIFQRVKGIIEEYLP 70
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+E A+E F K+ + LKLG+A+ +AI + IP+ EYAP IK A+ G G K+Q
Sbjct: 71 DEMAIEAPFFGKNIQSMLKLGRAQGVAIAAAINHDIPIFEYAPLKIKMAITGQGQASKEQ 130
Query: 126 IHMMLKMLMPESF---FKGKDAADALAIAVCHAYHAN 159
+ ML L+ K DA DAL +A CH
Sbjct: 131 VADMLLRLLKLDKGNLPKFMDATDALGVAYCHYLQTG 167
>gi|154246994|ref|YP_001417952.1| Holliday junction resolvase [Xanthobacter autotrophicus Py2]
gi|238686726|sp|A7IJV2|RUVC_XANP2 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|154161079|gb|ABS68295.1| crossover junction endodeoxyribonuclease RuvC [Xanthobacter
autotrophicus Py2]
Length = 169
Score = 168 bits (425), Expect = 3e-40, Method: Composition-based stats.
Identities = 73/150 (48%), Positives = 108/150 (72%)
Query: 4 SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+IRI+G+DPGLRRTGWG++DV G L FV+ GTI+ + + RL L+ L VI+ +
Sbjct: 5 AIRILGLDPGLRRTGWGVIDVTGSRLAFVACGTILPPEQAPMGERLAHLHRELLGVIERF 64
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
P+EAAVE+ FVN + +TLKLGQAR + +L+PA +PV+EYA +KK+V+G G +K
Sbjct: 65 SPQEAAVEETFVNMNPSSTLKLGQARGVVLLAPAQMGLPVAEYAALLVKKSVVGAGRAEK 124
Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVC 153
Q+ MM+ +L+P++ + +DA+DALA+AV
Sbjct: 125 AQVRMMIGILLPKATPETEDASDALAVAVT 154
>gi|260911196|ref|ZP_05917799.1| crossover junction endoribonuclease subunit C [Prevotella sp. oral
taxon 472 str. F0295]
gi|260634676|gb|EEX52763.1| crossover junction endoribonuclease subunit C [Prevotella sp. oral
taxon 472 str. F0295]
Length = 190
Score = 168 bits (425), Expect = 3e-40, Method: Composition-based stats.
Identities = 56/157 (35%), Positives = 81/157 (51%), Gaps = 3/157 (1%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG G+G++ V G V+ G I RL ++E ++ +I + P
Sbjct: 9 IILGIDPGTTLMGYGVIRVVGKKAQMVAMGVIDLRKMPDPYLRLGHIFERVSGIIDAYLP 68
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+E A+E F K+ + LKLG+A+ +AI + IP+ EYAP IK A+ G G K+Q
Sbjct: 69 DELAIEAPFFGKNVQSMLKLGRAQGVAIAAAIHRDIPIHEYAPLKIKMAITGQGQASKEQ 128
Query: 126 IHMMLKMLMPESF---FKGKDAADALAIAVCHAYHAN 159
+ MLK ++ S K DA DAL A CH
Sbjct: 129 VAGMLKRMLKLSDDDMPKFMDATDALGAAYCHFLQMG 165
>gi|58040112|ref|YP_192076.1| Holliday junction resolvase [Gluconobacter oxydans 621H]
gi|81557004|sp|Q5FQC6|RUVC_GLUOX RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|58002526|gb|AAW61420.1| Crossover junction endodeoxyribonuclease RuvC [Gluconobacter
oxydans 621H]
Length = 168
Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats.
Identities = 72/150 (48%), Positives = 108/150 (72%)
Query: 4 SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
IR++GIDPGLR GWGI+DV G++L V+SG I + +S+ RLC+L+ L +I+ +
Sbjct: 1 MIRLMGIDPGLRFMGWGIIDVDGNHLKHVASGVIGTDGSESVPLRLCELHGALKKLIREY 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
P EAAVE+ +VN++ +TLKLG AR +A+L+PA +PV+EY T+KK+V+G G K
Sbjct: 61 APAEAAVEETYVNRNGSSTLKLGYARGVALLTPAYEGLPVAEYGAMTVKKSVVGTGSASK 120
Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVC 153
+Q+ MM+K L+P + + DA+DALA+A+C
Sbjct: 121 EQVTMMVKRLLPGAEIRKADASDALAVAIC 150
>gi|213969184|ref|ZP_03397323.1| Holliday junction resolvase [Pseudomonas syringae pv. tomato T1]
gi|301384821|ref|ZP_07233239.1| Holliday junction resolvase [Pseudomonas syringae pv. tomato Max13]
gi|302063525|ref|ZP_07255066.1| Holliday junction resolvase [Pseudomonas syringae pv. tomato K40]
gi|302130611|ref|ZP_07256601.1| Holliday junction resolvase [Pseudomonas syringae pv. tomato NCPPB
1108]
gi|302187158|ref|ZP_07263831.1| Holliday junction resolvase [Pseudomonas syringae pv. syringae 642]
gi|213926182|gb|EEB59738.1| Holliday junction resolvase [Pseudomonas syringae pv. tomato T1]
gi|330872654|gb|EGH06803.1| Holliday junction resolvase [Pseudomonas syringae pv. morsprunorum
str. M302280PT]
gi|330950610|gb|EGH50870.1| Holliday junction resolvase [Pseudomonas syringae Cit 7]
gi|330964823|gb|EGH65083.1| Holliday junction resolvase [Pseudomonas syringae pv. actinidiae
str. M302091]
gi|331016438|gb|EGH96494.1| Holliday junction resolvase [Pseudomonas syringae pv. lachrymans
str. M302278PT]
Length = 174
Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats.
Identities = 63/154 (40%), Positives = 97/154 (62%), Gaps = 1/154 (0%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
I+GIDPG R TG+G+V G +V+SG I + + L RL +Y G+ +VIK + P
Sbjct: 4 ILGIDPGSRITGYGVVRDTGRGCVYVASGCIRTGSGE-LHERLQIVYRGVREVIKTYGPV 62
Query: 67 EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
+E+VF+ ++A + LKLGQAR AI++ A + ++EY +K+AV G G +K+Q+
Sbjct: 63 TMGIEKVFMARNADSALKLGQARGAAIVAGAEEALEIAEYTATQVKQAVAGTGGANKEQV 122
Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
MM+ L+ + DA+DALAIA+CHA+ +S
Sbjct: 123 MMMVMHLLKLTQKPQIDASDALAIALCHAHTRSS 156
>gi|313203724|ref|YP_004042381.1| crossover junction endodeoxyribonuclease ruvc [Paludibacter
propionicigenes WB4]
gi|312443040|gb|ADQ79396.1| crossover junction endodeoxyribonuclease RuvC [Paludibacter
propionicigenes WB4]
Length = 198
Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats.
Identities = 51/162 (31%), Positives = 83/162 (51%), Gaps = 3/162 (1%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M K I+GIDPG G+GI+ V+G+ ++ G + + +L +++ +I
Sbjct: 1 MIKEHIILGIDPGTTIMGYGILKVSGNKTEMLAMGVLDLKKYSNHYLKLQRVFARTLSLI 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
+ P+ A+E F K+ + LKLG+A+ +A+ + +P++EYAP IK A+ G G
Sbjct: 61 DEFHPDHLAIEAPFFGKNVQSMLKLGRAQGVAMSAALYRDVPITEYAPLKIKMAITGSGS 120
Query: 121 GDKKQIHMMLKMLMP---ESFFKGKDAADALAIAVCHAYHAN 159
K+Q+ ML+ + ES DA D LA A CH
Sbjct: 121 ASKEQVADMLRRYLKIPQESMLPQLDATDGLAAAYCHFLQLG 162
>gi|330988968|gb|EGH87071.1| Holliday junction resolvase [Pseudomonas syringae pv. lachrymans
str. M301315]
Length = 174
Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats.
Identities = 63/154 (40%), Positives = 97/154 (62%), Gaps = 1/154 (0%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
I+GIDPG R TG+G+V G +V+SG I + + L RL +Y G+ +VIK + P
Sbjct: 4 ILGIDPGSRITGYGVVRDTGRGCVYVASGCIRTGSGE-LHERLQIVYRGVREVIKTYGPV 62
Query: 67 EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
+E+VF+ ++A + LKLGQAR AI++ A + ++EY +K+AV G G +K+Q+
Sbjct: 63 TMGIEKVFMARNADSALKLGQARGAAIVAGAEEALEIAEYTATQVKQAVAGTGGANKEQV 122
Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
MM+ L+ + DA+DALAIA+CHA+ +S
Sbjct: 123 MMMVMHLLKLTQKPQIDASDALAIALCHAHTRSS 156
>gi|85858585|ref|YP_460787.1| crossover junction endodeoxyribonuclease [Syntrophus aciditrophicus
SB]
gi|85721676|gb|ABC76619.1| crossover junction endodeoxyribonuclease [Syntrophus aciditrophicus
SB]
Length = 181
Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats.
Identities = 56/155 (36%), Positives = 90/155 (58%), Gaps = 2/155 (1%)
Query: 5 IR--IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
+R ++GIDPG TG+GIV+ + + G I S L ++Y+ L +++
Sbjct: 21 MRLKVLGIDPGSVVTGFGIVEQIQERYIDIVHGEIRLKRGTSFTSSLEKIYDELFSLVER 80
Query: 63 WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
+P+ A+E +F K+ + +K G R +AIL+ + +PV EY P IKKAV+G GH +
Sbjct: 81 EQPDAVAIEDIFYGKNIKSLIKQGHVRGVAILAGSKHHLPVFEYTPLEIKKAVVGYGHAE 140
Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYH 157
K Q+ M+K++M S DA+DA+A+A+CH H
Sbjct: 141 KIQVQNMIKVIMKLSELPPADASDAIAVAICHLNH 175
>gi|330896127|gb|EGH28348.1| Holliday junction resolvase [Pseudomonas syringae pv. japonica str.
M301072PT]
gi|330936722|gb|EGH40907.1| Holliday junction resolvase [Pseudomonas syringae pv. pisi str.
1704B]
gi|330975329|gb|EGH75395.1| Holliday junction resolvase [Pseudomonas syringae pv. aptata str.
DSM 50252]
Length = 174
Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats.
Identities = 63/154 (40%), Positives = 97/154 (62%), Gaps = 1/154 (0%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
I+GIDPG R TG+G+V G +V+SG I + + L RL +Y G+ +VIK + P
Sbjct: 4 ILGIDPGSRITGYGVVRDTGRGCVYVASGCIRTGSGE-LHERLQIVYRGVREVIKTYGPV 62
Query: 67 EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
+E+VF+ ++A + LKLGQAR AI++ A + ++EY +K+AV G G +K+Q+
Sbjct: 63 TMGIEKVFMARNADSALKLGQARGAAIVAGAEEALEIAEYTATQVKQAVAGTGGANKEQV 122
Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
MM+ L+ + DA+DALAIA+CHA+ +S
Sbjct: 123 MMMVMHLLKLTQKPQIDASDALAIALCHAHTRSS 156
>gi|89068048|ref|ZP_01155465.1| Holliday junction resolvase [Oceanicola granulosus HTCC2516]
gi|89046287|gb|EAR52344.1| Holliday junction resolvase [Oceanicola granulosus HTCC2516]
Length = 169
Score = 167 bits (423), Expect = 5e-40, Method: Composition-based stats.
Identities = 81/159 (50%), Positives = 108/159 (67%), Gaps = 1/159 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+R+IGIDPGLR TGWG+++ G L V++G ++LA RL L+ L +V +
Sbjct: 1 MRVIGIDPGLRHTGWGLIESVGSKLRHVANGVCH-SEGETLAARLLSLHLQLAEVFRQHA 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
PE AAVEQ FVN+D TLKLGQAR IA+L PA A + V EYAPN +KK+V+GVGH DK
Sbjct: 60 PEAAAVEQTFVNRDGAGTLKLGQARGIAMLVPAQAGLEVGEYAPNAVKKSVVGVGHADKS 119
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYY 163
Q+ M+++ +P G DAADALA+A+CH +H SG +
Sbjct: 120 QVAHMVRVHLPGVALAGPDAADALAVAICHVHHLQSGRH 158
>gi|288927303|ref|ZP_06421150.1| crossover junction endodeoxyribonuclease RuvC [Prevotella sp. oral
taxon 317 str. F0108]
gi|288330137|gb|EFC68721.1| crossover junction endodeoxyribonuclease RuvC [Prevotella sp. oral
taxon 317 str. F0108]
Length = 190
Score = 167 bits (423), Expect = 5e-40, Method: Composition-based stats.
Identities = 56/157 (35%), Positives = 81/157 (51%), Gaps = 3/157 (1%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG G+G++ V G V+ G I RL ++E ++ +I + P
Sbjct: 9 IIMGIDPGTTLMGYGVIRVVGKKAQMVAMGVIDLRKMPDPYLRLGHIFERVSGIIDAYLP 68
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+E A+E F K+ + LKLG+A+ +AI + IP+ EYAP IK A+ G G K+Q
Sbjct: 69 DELAIEAPFFGKNVQSMLKLGRAQGVAIAAAIQRDIPIHEYAPLKIKMAITGQGQASKEQ 128
Query: 126 IHMMLKMLMPESF---FKGKDAADALAIAVCHAYHAN 159
+ MLK ++ S K DA DAL A CH
Sbjct: 129 VAGMLKRMLKLSDDDMPKFMDATDALGAAYCHFLQMG 165
>gi|210635286|ref|ZP_03298482.1| hypothetical protein COLSTE_02413 [Collinsella stercoris DSM 13279]
gi|210158447|gb|EEA89418.1| hypothetical protein COLSTE_02413 [Collinsella stercoris DSM 13279]
Length = 174
Score = 167 bits (423), Expect = 5e-40, Method: Composition-based stats.
Identities = 59/157 (37%), Positives = 88/157 (56%), Gaps = 1/157 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ I+GIDPGL TGWGIV+ + + G I + LA RL ++ LT V+ +
Sbjct: 1 MVILGIDPGLAHTGWGIVEERHGEVRCRAYGCIETSAGSDLAARLRRIANELTTVVDRYH 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+EAAVE ++ + + + AR A+++ +L + V EY P IK+AV+G G DK
Sbjct: 61 PQEAAVEGIYFGANVRSAIPTAHARGAALVACSLCSVEVGEYTPMQIKQAVVGTGSADKA 120
Query: 125 QIHMMLKMLMPES-FFKGKDAADALAIAVCHAYHANS 160
Q+ M++ L+ K AADALA AVCHA+ +
Sbjct: 121 QVTYMVRTLLHLDHDPKPDHAADALACAVCHAHLRRT 157
>gi|169831523|ref|YP_001717505.1| crossover junction endodeoxyribonuclease RuvC [Candidatus
Desulforudis audaxviator MP104C]
gi|169638367|gb|ACA59873.1| crossover junction endodeoxyribonuclease RuvC [Candidatus
Desulforudis audaxviator MP104C]
Length = 162
Score = 167 bits (423), Expect = 5e-40, Method: Composition-based stats.
Identities = 54/154 (35%), Positives = 92/154 (59%), Gaps = 1/154 (0%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
++G+DPGL TG+G++ V G++ ++ + + A RL LY + + + RP+
Sbjct: 4 VMGLDPGLATTGYGVLQVTGNSYEVIAYDCLRTPAGLPDADRLEMLYRLIATLHERHRPQ 63
Query: 67 EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
E AVEQ+F +++ L++GQAR +A+L+ A A + EY P IK+ + G G DKKQ+
Sbjct: 64 EVAVEQLFFHRNVTTALQVGQARGVALLAAAQAGARIIEYTPLQIKQGITGSGRADKKQV 123
Query: 127 HMMLKMLMPESF-FKGKDAADALAIAVCHAYHAN 159
M++ ++ + + D ADALA+A+CH +H
Sbjct: 124 QYMVRTILGLAVTPQPDDVADALAVALCHCHHRR 157
>gi|328955750|ref|YP_004373083.1| crossover junction endodeoxyribonuclease RuvC [Coriobacterium
glomerans PW2]
gi|328456074|gb|AEB07268.1| crossover junction endodeoxyribonuclease RuvC [Coriobacterium
glomerans PW2]
Length = 174
Score = 167 bits (423), Expect = 5e-40, Method: Composition-based stats.
Identities = 55/159 (34%), Positives = 91/159 (57%), Gaps = 1/159 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ ++GIDPGL TGWG+V+ ++ + G I + LA RL ++ + L V++ +R
Sbjct: 1 MVVLGIDPGLANTGWGVVEERSGDVRCRAYGCIQTASGSPLAVRLRRIADDLRAVVERYR 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ AA+E ++ + + + AR A+++ +LA + V EY P IK+AV+G G DK
Sbjct: 61 PQTAAIEDIYFGVNVRSAIPTAHARGAALVACSLAGMDVGEYTPMQIKQAVVGTGAADKA 120
Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHANSGY 162
QI M++ L+ + AADALA A+CHA+ +
Sbjct: 121 QIAYMVRRLLQLDREPRPDHAADALACAICHAHLVRTAA 159
>gi|326798986|ref|YP_004316805.1| Crossover junction endodeoxyribonuclease ruvC [Sphingobacterium sp.
21]
gi|326549750|gb|ADZ78135.1| Crossover junction endodeoxyribonuclease ruvC [Sphingobacterium sp.
21]
Length = 188
Score = 167 bits (423), Expect = 5e-40, Method: Composition-based stats.
Identities = 55/154 (35%), Positives = 89/154 (57%), Gaps = 1/154 (0%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
I+GIDPG + G+G++ G L +S G I ++ A +L +++E T +I + P+
Sbjct: 11 ILGIDPGTKVMGYGLIQEKGKQLSLISLGIIKLDHLENQALKLQRIFEKTTSLIDQYHPD 70
Query: 67 EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
A+E F K+ LKLG+A+ +A+ + +I ++EYAP IK++V G G K+Q+
Sbjct: 71 CMALEDPFYGKNIQVILKLGRAQGVAMAAALAKKIEIAEYAPRKIKQSVTGNGSASKEQV 130
Query: 127 HMMLKMLMP-ESFFKGKDAADALAIAVCHAYHAN 159
MLK L+ + + DA D LA+AVCHA+
Sbjct: 131 ASMLKNLLNFKESPQFFDATDGLAVAVCHAFQGR 164
>gi|255534542|ref|YP_003094913.1| Holliday junction resolvase [Flavobacteriaceae bacterium 3519-10]
gi|255340738|gb|ACU06851.1| Crossover junction endodeoxyribonuclease ruvC [Flavobacteriaceae
bacterium 3519-10]
Length = 184
Score = 167 bits (423), Expect = 5e-40, Method: Composition-based stats.
Identities = 50/161 (31%), Positives = 89/161 (55%), Gaps = 2/161 (1%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M+ I+GIDPG G+G++ V + +S ++ + +L +++ +I
Sbjct: 1 MQTEKIILGIDPGTTIMGFGLISVVKGKMEMLSIHELILKKYPNHETKLKVIFDRTLALI 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
+ P+E A+E F K+ + LKLG+A+ +A+ + IP++EY+P IK A+ G G+
Sbjct: 61 DEFHPDEVALEAPFFGKNVQSMLKLGRAQGVAMAAALHRDIPITEYSPKKIKMAITGNGN 120
Query: 121 GDKKQIHMMLKMLMPESFFKG--KDAADALAIAVCHAYHAN 159
K+Q+ ML+ L+ F DA+D LA+AVCH +++
Sbjct: 121 ASKEQVAGMLQSLLNLKEFPTKYLDASDGLAVAVCHHFNSG 161
>gi|154149660|ref|YP_001403278.1| Holliday junction resolvase [Candidatus Methanoregula boonei 6A8]
gi|153998212|gb|ABS54635.1| crossover junction endodeoxyribonuclease RuvC [Methanoregula boonei
6A8]
Length = 156
Score = 167 bits (423), Expect = 6e-40, Method: Composition-based stats.
Identities = 51/153 (33%), Positives = 85/153 (55%), Gaps = 1/153 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ +IGIDPGL R G+G++ + G + + RL ++ GL + + +
Sbjct: 1 MMVIGIDPGLARLGYGVIRAERGTAVPLCYGCLETRAGARPGERLLEISRGLASLFERYP 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ AVE++F +K+ + + + + R I +L+ IPV+EY PN +K+AV G G DK
Sbjct: 61 PDALAVEKLFFSKNVTSAMGVSEVRGIVLLAAEERGIPVTEYTPNQVKQAVTGSGRADKA 120
Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAY 156
Q+ M+ L+ + DAADAL+IA+CH +
Sbjct: 121 QVQQMITRLLRLHEVPQPDDAADALSIALCHIH 153
>gi|330959264|gb|EGH59524.1| Holliday junction resolvase [Pseudomonas syringae pv. maculicola
str. ES4326]
Length = 174
Score = 167 bits (423), Expect = 6e-40, Method: Composition-based stats.
Identities = 63/154 (40%), Positives = 97/154 (62%), Gaps = 1/154 (0%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
I+GIDPG R TG+G+V G +V+SG I + + L RL +Y G+ +VIK + P
Sbjct: 4 ILGIDPGSRITGYGVVRDTGRGCVYVASGCIRTGSGE-LHERLQIVYRGVREVIKTYGPV 62
Query: 67 EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
+E+VF+ ++A + LKLGQAR AI++ A + ++EY +K+AV G G +K+Q+
Sbjct: 63 TMGIEKVFMARNADSALKLGQARGGAIVAGAEEALEIAEYTATQVKQAVAGTGGANKEQV 122
Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
MM+ L+ + DA+DALAIA+CHA+ +S
Sbjct: 123 MMMVMHLLKLTQKPQIDASDALAIALCHAHTRSS 156
>gi|77464126|ref|YP_353630.1| Holliday junction resolvase [Rhodobacter sphaeroides 2.4.1]
gi|221639993|ref|YP_002526255.1| Holliday junction resolvase [Rhodobacter sphaeroides KD131]
gi|332559002|ref|ZP_08413324.1| Holliday junction resolvase [Rhodobacter sphaeroides WS8N]
gi|110282925|sp|Q3J0F5|RUVC_RHOS4 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|254767483|sp|B9KKV7|RUVC_RHOSK RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|77388544|gb|ABA79729.1| Holliday junction endonuclease RuvC [Rhodobacter sphaeroides 2.4.1]
gi|221160774|gb|ACM01754.1| Crossover junction endodeoxyribonuclease ruvC [Rhodobacter
sphaeroides KD131]
gi|332276714|gb|EGJ22029.1| Holliday junction resolvase [Rhodobacter sphaeroides WS8N]
Length = 168
Score = 166 bits (422), Expect = 6e-40, Method: Composition-based stats.
Identities = 85/157 (54%), Positives = 110/157 (70%), Gaps = 1/157 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+R++GIDPGLR GWG++DV+G L V++G S LA RL L+ LTDV+ ++
Sbjct: 1 MRVLGIDPGLRNMGWGVIDVSGTRLAHVANGICHSDSG-DLAHRLLSLHGQLTDVLARFQ 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ AAVE FVNKD VATLKLGQAR IA+L PA A + V EYAPN +KK V+GVGH K+
Sbjct: 60 PDTAAVEHTFVNKDGVATLKLGQARGIALLVPAQAGLAVGEYAPNAVKKTVVGVGHAAKE 119
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSG 161
QI M+++ +P G DAADALA+A+CHA+H S
Sbjct: 120 QIQHMVRLHLPGVHLAGPDAADALAVAICHAHHVQSS 156
>gi|298372975|ref|ZP_06982965.1| crossover junction endodeoxyribonuclease RuvC [Bacteroidetes oral
taxon 274 str. F0058]
gi|298275879|gb|EFI17430.1| crossover junction endodeoxyribonuclease RuvC [Bacteroidetes oral
taxon 274 str. F0058]
Length = 190
Score = 166 bits (422), Expect = 6e-40, Method: Composition-based stats.
Identities = 57/164 (34%), Positives = 86/164 (52%), Gaps = 3/164 (1%)
Query: 2 RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
K I+GIDPG G+GI+ V G + FV+ G I + L ++ E +T +++
Sbjct: 3 EKERIILGIDPGTTVMGYGILRVVGKKVEFVTLGIINLRAIKDHYLTLRKISEEVTKLVE 62
Query: 62 NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
+ P+E A+E F K+ + LKLG+A+ +AI IP++EYAP IK A+ G G
Sbjct: 63 TYLPDELAIEAPFFEKNVQSMLKLGRAQGVAITVAITHDIPIAEYAPLKIKMAITGQGRA 122
Query: 122 DKKQIHMMLKMLMPESF---FKGKDAADALAIAVCHAYHANSGY 162
K+Q+ ML ++ S K DA D LA A CH ++
Sbjct: 123 SKEQVAAMLCKILKISPSSLPKELDATDGLAAAYCHYLQTSTAA 166
>gi|28871124|ref|NP_793743.1| crossover junction endodeoxyribonuclease RuvC [Pseudomonas syringae
pv. tomato str. DC3000]
gi|37999571|sp|Q87Y33|RUVC_PSESM RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|28854374|gb|AAO57438.1| crossover junction endodeoxyribonuclease RuvC [Pseudomonas syringae
pv. tomato str. DC3000]
Length = 176
Score = 166 bits (422), Expect = 6e-40, Method: Composition-based stats.
Identities = 63/155 (40%), Positives = 96/155 (61%), Gaps = 1/155 (0%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQ-SLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G+V G +V+SG I + L RL +Y G+ +VIK + P
Sbjct: 4 ILGIDPGSRITGYGVVRDTGRGCVYVASGCIRTGTGSGELHERLQIVYRGVREVIKTYGP 63
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+E+VF+ ++A + LKLGQAR AI++ A + ++EY +K+AV G G +K+Q
Sbjct: 64 VTMGIEKVFMARNADSALKLGQARGAAIVAGAEEALEIAEYTATQVKQAVAGTGGANKEQ 123
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
+ MM+ L+ + DA+DALAIA+CHA+ +S
Sbjct: 124 VMMMVMHLLKLTQKPQIDASDALAIALCHAHTRSS 158
>gi|194335780|ref|YP_002017574.1| crossover junction endodeoxyribonuclease RuvC [Pelodictyon
phaeoclathratiforme BU-1]
gi|238693392|sp|B4SDW6|RUVC_PELPB RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|194308257|gb|ACF42957.1| crossover junction endodeoxyribonuclease RuvC [Pelodictyon
phaeoclathratiforme BU-1]
Length = 191
Score = 166 bits (422), Expect = 7e-40, Method: Composition-based stats.
Identities = 54/158 (34%), Positives = 83/158 (52%), Gaps = 1/158 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ ++G+DPG R TG+G++ G +S G I R S A R+ Q+Y L VI ++
Sbjct: 1 MVVLGVDPGSRLTGYGVIRQEGTFFTVLSCGVIRLHPRSSHAERIGQIYRELEAVITDYA 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
PE A+E VF++++ + LKLGQ R I + + EYAP +K AV G G K+
Sbjct: 61 PECVALETVFLSRNVQSALKLGQVRGAVIALAMNRNLLLHEYAPREVKSAVTGKGAASKE 120
Query: 125 QIHMMLKMLMPESF-FKGKDAADALAIAVCHAYHANSG 161
Q+ M+ ++ + + D DAL IA+C S
Sbjct: 121 QVAFMVARMLALNPVPEPFDVTDALGIALCDLLRGGSR 158
>gi|229496128|ref|ZP_04389849.1| crossover junction endodeoxyribonuclease RuvC [Porphyromonas
endodontalis ATCC 35406]
gi|229316959|gb|EEN82871.1| crossover junction endodeoxyribonuclease RuvC [Porphyromonas
endodontalis ATCC 35406]
Length = 192
Score = 166 bits (422), Expect = 7e-40, Method: Composition-based stats.
Identities = 52/171 (30%), Positives = 93/171 (54%), Gaps = 6/171 (3%)
Query: 2 RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
K I+G+DPG + G+G++ + ++ G I + RL ++ +T +I+
Sbjct: 4 AKERIILGVDPGTQLMGYGLIRITASQPKLLALGVIELSKYEDHYLRLSHIFNRITGLIE 63
Query: 62 NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
+ P+E A+E F K+ + LKLG+A+ A+++ +P++EYAP IK+++ G G
Sbjct: 64 EFLPDEMALEAPFYGKNVQSMLKLGRAQGAAMIAGLQRGLPITEYAPLRIKQSITGSGSA 123
Query: 122 DKKQIHMMLKMLMPES---FFKGKDAADALAIAVCHAYHANSGYYKIASQD 169
K+Q+ ML+ ++ K DA D LA+A+CH Y ++ +AS D
Sbjct: 124 SKEQVAAMLQRILAIPAADMPKHLDATDGLAVALCHFYQTSNT---LASSD 171
>gi|282860256|ref|ZP_06269327.1| crossover junction endodeoxyribonuclease RuvC [Prevotella bivia
JCVIHMP010]
gi|282586989|gb|EFB92223.1| crossover junction endodeoxyribonuclease RuvC [Prevotella bivia
JCVIHMP010]
Length = 192
Score = 166 bits (422), Expect = 8e-40, Method: Composition-based stats.
Identities = 52/157 (33%), Positives = 84/157 (53%), Gaps = 3/157 (1%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG G+G++ + G+ + G I + + RL ++++ +T +I + P
Sbjct: 11 IILGIDPGTNVMGYGLLHIVGNKAELIVMGVIDMRKEKDVYLRLGKIFDRVTGIIDEYLP 70
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+E A+E F K+ + LKLG+A+ +AI + +P+ EYAP IK A+ G G K+Q
Sbjct: 71 DELAIEAPFFGKNVQSMLKLGRAQGVAIAAAIHHDVPIHEYAPLKIKMAITGNGAASKEQ 130
Query: 126 IHMMLKMLMPE---SFFKGKDAADALAIAVCHAYHAN 159
+ ML+ L+ DA DA+A A CH N
Sbjct: 131 VAKMLQKLLHLRDDQMPHFMDATDAIAAAYCHFLQIN 167
>gi|73666641|ref|YP_302657.1| Holliday junction endonuclease RuvC [Ehrlichia canis str. Jake]
gi|108884828|sp|Q3YT96|RUVC_EHRCJ RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|72393782|gb|AAZ68059.1| Holliday junction endonuclease RuvC [Ehrlichia canis str. Jake]
Length = 156
Score = 166 bits (421), Expect = 8e-40, Method: Composition-based stats.
Identities = 52/156 (33%), Positives = 100/156 (64%), Gaps = 1/156 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ +IG+DPGL TGWGI+ + D + + +G I + +++ RL ++++ L +++ +++
Sbjct: 1 MNVIGLDPGLNHTGWGILSIEKD-IKLIGNGVIKTNNKETPGQRLNKIHKELINILNSYQ 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
A++E+VF+NK+ +++ L AR + +L+ I V EY+ N +KK++ G GH K+
Sbjct: 60 INSASMEEVFINKNPRSSISLCYARGVLLLTLNAMNIQVFEYSSNYVKKSITGNGHAKKE 119
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
Q+H M++ ++ F D +DA+A+A+CHAY N+
Sbjct: 120 QVHFMVEKILNVEFKGTYDISDAIAVALCHAYSKNN 155
>gi|328948461|ref|YP_004365798.1| Crossover junction endodeoxyribonuclease ruvC [Treponema
succinifaciens DSM 2489]
gi|328448785|gb|AEB14501.1| Crossover junction endodeoxyribonuclease ruvC [Treponema
succinifaciens DSM 2489]
Length = 161
Score = 166 bits (421), Expect = 8e-40, Method: Composition-based stats.
Identities = 55/160 (34%), Positives = 81/160 (50%), Gaps = 1/160 (0%)
Query: 3 KSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
K RIIGIDPGL TG+GI+D + VS G I + S RL +Y L ++
Sbjct: 2 KERRIIGIDPGLAHTGFGIIDCENSRISLVSYGVIETSSNDSHEVRLFYIYNKLLAILNE 61
Query: 63 WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
+RP EA +E +F ++ + L + +A+ + L IP+ Y+PN IK AV G D
Sbjct: 62 FRPTEAEMETLFFARNTTSALAVAEAKGVVNLCLVQQAIPIFMYSPNQIKCAVTGTKTAD 121
Query: 123 KKQIHMMLKMLMPESFFK-GKDAADALAIAVCHAYHANSG 161
K + +++L+ AADALA A+ H + S
Sbjct: 122 KDTVARYVQLLLNLKQPPRPDHAADALAGAITHFHSTLSA 161
>gi|296113753|ref|YP_003627691.1| crossover junction endodeoxyribonuclease RuvC [Moraxella
catarrhalis RH4]
gi|295921447|gb|ADG61798.1| crossover junction endodeoxyribonuclease RuvC [Moraxella
catarrhalis RH4]
gi|326562102|gb|EGE12430.1| Holliday junction resolvase [Moraxella catarrhalis 7169]
gi|326564533|gb|EGE14759.1| Holliday junction resolvase [Moraxella catarrhalis 46P47B1]
gi|326565717|gb|EGE15880.1| Holliday junction resolvase [Moraxella catarrhalis 12P80B1]
gi|326566285|gb|EGE16437.1| Holliday junction resolvase [Moraxella catarrhalis 103P14B1]
gi|326567063|gb|EGE17185.1| Holliday junction resolvase [Moraxella catarrhalis BC1]
gi|326568327|gb|EGE18407.1| Holliday junction resolvase [Moraxella catarrhalis BC7]
gi|326572228|gb|EGE22223.1| Holliday junction resolvase [Moraxella catarrhalis BC8]
gi|326574570|gb|EGE24510.1| Holliday junction resolvase [Moraxella catarrhalis O35E]
gi|326574826|gb|EGE24756.1| Holliday junction resolvase [Moraxella catarrhalis 101P30B1]
gi|326576150|gb|EGE26065.1| Holliday junction resolvase [Moraxella catarrhalis CO72]
Length = 196
Score = 166 bits (421), Expect = 8e-40, Method: Composition-based stats.
Identities = 62/159 (38%), Positives = 95/159 (59%), Gaps = 6/159 (3%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR-- 64
IIGIDPG R TG+GI+ D L F+ +GTI + + R+ Q++ G++ ++ +++
Sbjct: 4 IIGIDPGSRLTGYGIISTNNDQLTFLDAGTIRTNSS-DITERIAQIFAGVSRIVNHYQKY 62
Query: 65 ---PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
P +AA+EQVF+ + + LKLGQAR AI + + VSEY IK+AV G G
Sbjct: 63 SNKPIQAAIEQVFMANNPDSALKLGQARGAAIAALTAQDLQVSEYTARQIKQAVCGYGAA 122
Query: 122 DKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
DK+Q+ M+ ++ DAAD LA A+CHA+ ++S
Sbjct: 123 DKEQVTAMVCRILSLDIIPQADAADGLACAICHAHSSHS 161
>gi|326386111|ref|ZP_08207735.1| crossover junction endodeoxyribonuclease RuvC [Novosphingobium
nitrogenifigens DSM 19370]
gi|326209336|gb|EGD60129.1| crossover junction endodeoxyribonuclease RuvC [Novosphingobium
nitrogenifigens DSM 19370]
Length = 158
Score = 166 bits (421), Expect = 8e-40, Method: Composition-based stats.
Identities = 75/156 (48%), Positives = 104/156 (66%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ I+G+DPGL TGWGI+ AG L V++G I + +++A RL +L LTDVI R
Sbjct: 1 MIILGVDPGLTCTGWGIIAKAGSRLSHVANGQIRTDASRTMAERLVELDTTLTDVILAHR 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ AVE+VFVN + +TLKLG AR +A++S A A +PV+EY IKKA++G G K+
Sbjct: 61 PDAGAVEEVFVNVNPQSTLKLGHARGVALVSLARAGMPVAEYPTKVIKKALVGTGGAQKQ 120
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
Q+ MLK+L+P G+DAADALA+A+ HA S
Sbjct: 121 QVQAMLKVLLPGIRLAGEDAADALAVAITHANMLGS 156
>gi|288924951|ref|ZP_06418887.1| crossover junction endodeoxyribonuclease RuvC [Prevotella buccae
D17]
gi|315607984|ref|ZP_07882977.1| crossover junction endoribonuclease subunit C [Prevotella buccae
ATCC 33574]
gi|288338141|gb|EFC76491.1| crossover junction endodeoxyribonuclease RuvC [Prevotella buccae
D17]
gi|315250453|gb|EFU30449.1| crossover junction endoribonuclease subunit C [Prevotella buccae
ATCC 33574]
Length = 186
Score = 166 bits (421), Expect = 9e-40, Method: Composition-based stats.
Identities = 55/162 (33%), Positives = 84/162 (51%), Gaps = 3/162 (1%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M+ I+GIDPG G+G++ V + V G I + RL ++++ +T VI
Sbjct: 1 MKAEKIILGIDPGTNVMGYGVLRVVDNKASLVVMGIIDMRKERDPYLRLGKIFDRVTGVI 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
+ P+E A+E F K+ + LKLG+A+ +AI + IP+ EYAP IK ++ G G
Sbjct: 61 DEYLPDEMAIEAPFFGKNVQSMLKLGRAQGVAIAAAIHHDIPIHEYAPLKIKLSITGQGK 120
Query: 121 GDKKQIHMMLKMLMPESF---FKGKDAADALAIAVCHAYHAN 159
K+Q+ ML+ ++ S K DA DAL A CH
Sbjct: 121 ASKEQVAEMLRRILNISDGDMPKFMDATDALGAAYCHYLQMG 162
>gi|93005501|ref|YP_579938.1| crossover junction endodeoxyribonuclease RuvC [Psychrobacter
cryohalolentis K5]
gi|123264700|sp|Q1QCZ9|RUVC_PSYCK RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|92393179|gb|ABE74454.1| crossover junction endodeoxyribonuclease RuvC [Psychrobacter
cryohalolentis K5]
Length = 194
Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats.
Identities = 64/160 (40%), Positives = 96/160 (60%), Gaps = 6/160 (3%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW-- 63
IIGIDPG R TG+GI+ GD L ++ SGTI + ++ + RL +++ GLT + ++
Sbjct: 3 IIIGIDPGSRMTGYGILQQTGDKLTYIDSGTIRTDTKE-MPERLKRIFNGLTRITQHHLK 61
Query: 64 ---RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
P A+EQVF+ ++ + LKLGQAR AI + + VSEY IK+AV G G
Sbjct: 62 YADEPIYTAIEQVFMAENPDSALKLGQARGAAIAAMVALDLEVSEYTARQIKQAVCGYGA 121
Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
K+Q+ M+ ++ F +DAAD LA A+CHA+ ++S
Sbjct: 122 AAKEQVQEMVCRILTLDFVPQQDAADGLACAICHAHSSHS 161
>gi|282879013|ref|ZP_06287775.1| crossover junction endodeoxyribonuclease RuvC [Prevotella buccalis
ATCC 35310]
gi|281298848|gb|EFA91255.1| crossover junction endodeoxyribonuclease RuvC [Prevotella buccalis
ATCC 35310]
Length = 197
Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats.
Identities = 51/156 (32%), Positives = 78/156 (50%), Gaps = 3/156 (1%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
I+GIDPG G+G++ + V+ G I RL +++ +T +I + P+
Sbjct: 14 ILGIDPGTNVMGYGVIKILERKPSMVAMGVIDMRKTDDPYLRLGHIFDRITGIIDEYLPD 73
Query: 67 EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
E A+E F K+ + LKLG+A+ +AI + +P+ EYAP IK A+ G G K+Q+
Sbjct: 74 EMAIEAPFFGKNVQSMLKLGRAQGVAIAAAIHHDVPIHEYAPLKIKMAITGQGQASKEQV 133
Query: 127 HMMLKMLMPE---SFFKGKDAADALAIAVCHAYHAN 159
ML+ L+ DA DAL A CH
Sbjct: 134 AGMLQRLLKINQSEMPHFMDATDALGAAYCHFLQMG 169
>gi|315187234|gb|EFU20991.1| crossover junction endodeoxyribonuclease RuvC [Spirochaeta
thermophila DSM 6578]
Length = 169
Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats.
Identities = 50/165 (30%), Positives = 93/165 (56%), Gaps = 1/165 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
R +GIDPGL TG+G+++ G ++ +GTI + + + RL +++ + +++ + P
Sbjct: 3 RYLGIDPGLATTGYGVIETDGRGHKYIIAGTIRTSSGHTQSERLLKIFRHVQELLLKYEP 62
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
E +E++F ++ + + QA + L+ A+ IPV YAP +K+A++G G DK +
Sbjct: 63 EAIIMEELFFARNTTSAFYVAQAMGVVSLAAAMEDIPVYTYAPQMVKQAIVGHGRADKAE 122
Query: 126 IHMMLKMLMPESFFK-GKDAADALAIAVCHAYHANSGYYKIASQD 169
I L++L+ K A+DALAIA+CH + + + +D
Sbjct: 123 IQRFLRLLLNLPDTKMSDHASDALAIALCHVHQHGTPFATQGEED 167
>gi|147669065|ref|YP_001213883.1| crossover junction endodeoxyribonuclease RuvC [Dehalococcoides sp.
BAV1]
gi|189046064|sp|A5FS25|RUVC_DEHSB RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|146270013|gb|ABQ17005.1| crossover junction endodeoxyribonuclease RuvC [Dehalococcoides sp.
BAV1]
Length = 167
Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats.
Identities = 64/165 (38%), Positives = 102/165 (61%), Gaps = 3/165 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPG G+GI++ A D L V ++ + RL +Y+GL +VI+ ++
Sbjct: 1 MRILGIDPGTLVVGYGIIETANDELTLVGFSSLTPPACAPIPQRLAYIYKGLVEVIELYQ 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+E AVE F +K+ + L +G+A+A+A+L+ A +PV+EY+P IK V G G+ K+
Sbjct: 61 PDEVAVESPFADKNIKSALAIGKAQAVALLAAANHSLPVTEYSPACIKSRVAGSGNASKE 120
Query: 125 QIHMMLKMLMPESFFK-GKDAADALAIAVCHAYHANSGYYKIASQ 168
QI M+++L+ + DAADALA+A+CH H+ + I SQ
Sbjct: 121 QIQEMVRLLLNLAEIPQPNDAADALAVAICH--HSQRAFTNIISQ 163
>gi|148653235|ref|YP_001280328.1| Holliday junction resolvase [Psychrobacter sp. PRwf-1]
gi|172048526|sp|A5WFD7|RUVC_PSYWF RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|148572319|gb|ABQ94378.1| Holliday junction endonuclease RuvC [Psychrobacter sp. PRwf-1]
Length = 194
Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats.
Identities = 64/160 (40%), Positives = 96/160 (60%), Gaps = 6/160 (3%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW-- 63
IIGIDPG R TG+GI+ GD L ++ +GTI + ++ + RL ++++GLT + +
Sbjct: 3 IIIGIDPGSRMTGYGIIHQKGDTLRYLDAGTIRTDTKE-MPERLKRIFQGLTRITQYHLK 61
Query: 64 ---RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
P AAVEQVF+ ++ + LKLGQAR AI + + VSEY IK++V G G
Sbjct: 62 YSDEPIHAAVEQVFMAENPDSALKLGQARGAAIAALVALDLEVSEYTARQIKQSVCGYGA 121
Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
DK Q+ M+ ++ +DAAD LA A+CHA+ ++S
Sbjct: 122 ADKVQVQEMVCRILKLDVTPQQDAADGLACAICHAHSSHS 161
>gi|257453384|ref|ZP_05618679.1| crossover junction endodeoxyribonuclease RuvC [Enhydrobacter
aerosaccus SK60]
gi|257449136|gb|EEV24084.1| crossover junction endodeoxyribonuclease RuvC [Enhydrobacter
aerosaccus SK60]
Length = 200
Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats.
Identities = 64/171 (37%), Positives = 102/171 (59%), Gaps = 7/171 (4%)
Query: 5 IRI-IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVS-CVRQSLAFRLCQLYEGLTDVIKN 62
+ I IGIDPG R TG+GI+ ++GD L + +GTI + +++ RL ++++G++ ++++
Sbjct: 1 MSIFIGIDPGSRLTGYGIIRLSGDKLEHLDAGTIHAYSQGETMPERLKRIFDGISRIVEH 60
Query: 63 WR-----PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIG 117
++ P AA+EQVF+ + LKLGQAR AI + + V+EY IK+AV G
Sbjct: 61 YQKYTNEPMTAAIEQVFMASNPDTALKLGQARGAAIAAMVAKDLQVAEYTARQIKQAVCG 120
Query: 118 VGHGDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
G DK+QI +M+ L+ DAAD LA A+CHAYH+ + +
Sbjct: 121 YGAADKEQIQLMVMRLLSLEIQPQADAADGLACAICHAYHSQTLNKLLGGA 171
>gi|71065265|ref|YP_263992.1| Holliday junction resolvase [Psychrobacter arcticus 273-4]
gi|97274883|sp|Q4FTV0|RUVC_PSYA2 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|71038250|gb|AAZ18558.1| putative crossover junction endodeoxyribonuclease [Psychrobacter
arcticus 273-4]
Length = 194
Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats.
Identities = 64/160 (40%), Positives = 96/160 (60%), Gaps = 6/160 (3%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW-- 63
IIGIDPG R TG+GI+ GD L ++ SGTI + ++ + RL +++ GLT + ++
Sbjct: 3 IIIGIDPGSRMTGYGILQQTGDKLTYIDSGTIRTDTKE-MPERLKRIFNGLTRITQHHLK 61
Query: 64 ---RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
P A+EQVF+ ++ + LKLGQAR AI + + VSEY IK+AV G G
Sbjct: 62 YADEPIYTAIEQVFMAENPDSALKLGQARGAAIAAMVALDLEVSEYTARQIKQAVCGYGA 121
Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
K+Q+ M+ ++ F +DAAD LA A+CHA+ ++S
Sbjct: 122 AAKEQVQDMVCRILTLDFVPQQDAADGLACAICHAHSSHS 161
>gi|73748285|ref|YP_307524.1| crossover junction endodeoxyribonuclease RuvC [Dehalococcoides sp.
CBDB1]
gi|110287672|sp|Q3ZZK5|RUVC_DEHSC RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|73660001|emb|CAI82608.1| crossover junction endodeoxyribonuclease RuvC [Dehalococcoides sp.
CBDB1]
Length = 167
Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats.
Identities = 64/165 (38%), Positives = 102/165 (61%), Gaps = 3/165 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPG G+GI++ A D L V ++ + RL +Y+GL +VI+ ++
Sbjct: 1 MRILGIDPGTLVVGYGIIEAANDELTLVGFSSLTPPACAPIPQRLAYIYKGLVEVIELYQ 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+E AVE F +K+ + L +G+A+A+A+L+ A +PV+EY+P IK V G G+ K+
Sbjct: 61 PDEVAVESPFADKNIKSALAIGKAQAVALLAAANHSLPVTEYSPACIKSRVAGSGNASKE 120
Query: 125 QIHMMLKMLMPESFFK-GKDAADALAIAVCHAYHANSGYYKIASQ 168
QI M+++L+ + DAADALA+A+CH H+ + I SQ
Sbjct: 121 QIQEMVRLLLNLAEIPQPNDAADALAVAICH--HSQRAFTNIISQ 163
>gi|281425236|ref|ZP_06256149.1| crossover junction endodeoxyribonuclease RuvC [Prevotella oris
F0302]
gi|281400702|gb|EFB31533.1| crossover junction endodeoxyribonuclease RuvC [Prevotella oris
F0302]
Length = 205
Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats.
Identities = 53/157 (33%), Positives = 83/157 (52%), Gaps = 3/157 (1%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG G+G++ V G+ + G I RL ++E +T +I+++ P
Sbjct: 9 IILGIDPGTNVMGYGVLRVNGNKAKMEAMGVIDLRKMHDPYLRLGHIFERVTGIIESYLP 68
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+E A+E F K+ + LKLG+A+ +AI + +P+ EYAP IK A+ G G K+Q
Sbjct: 69 DELAIEAPFFGKNVQSMLKLGRAQGVAIAAAIRRDVPIHEYAPLKIKMAITGQGQASKEQ 128
Query: 126 IHMMLKMLMPESF---FKGKDAADALAIAVCHAYHAN 159
+ ML+ ++ + DA DALA A CH
Sbjct: 129 VAGMLQRVLHLEEEDMPRFMDATDALAAAYCHFLQMG 165
>gi|77460630|ref|YP_350137.1| Holliday junction resolvase [Pseudomonas fluorescens Pf0-1]
gi|91771934|sp|Q3K7V8|RUVC_PSEPF RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|77384633|gb|ABA76146.1| crossover junction endodeoxyribonuclease [Pseudomonas fluorescens
Pf0-1]
Length = 175
Score = 165 bits (419), Expect = 1e-39, Method: Composition-based stats.
Identities = 62/155 (40%), Positives = 98/155 (63%), Gaps = 2/155 (1%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+GIV G +V+SG I + + L RL +Y G+ ++I+ + P
Sbjct: 4 ILGIDPGSRITGYGIVRDTGRGGCIYVASGCIRTGAGE-LHERLQIVYRGVREIIQTYGP 62
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+E+VF+ K+A + LKLGQAR AI++ A + ++EY +K+AV+G G +K+Q
Sbjct: 63 VTMGIEKVFMAKNADSALKLGQARGAAIVAGAEESLEIAEYTATQVKQAVVGTGAANKEQ 122
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
+ MM+ ++ + DA+DALAIA+CHA+ +S
Sbjct: 123 VQMMVMHMLKLTSKPQIDASDALAIAICHAHTRSS 157
>gi|332188823|ref|ZP_08390532.1| crossover junction endodeoxyribonuclease RuvC [Sphingomonas sp.
S17]
gi|332011133|gb|EGI53229.1| crossover junction endodeoxyribonuclease RuvC [Sphingomonas sp.
S17]
Length = 172
Score = 165 bits (419), Expect = 1e-39, Method: Composition-based stats.
Identities = 74/165 (44%), Positives = 102/165 (61%), Gaps = 2/165 (1%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+G+DPGL TGWG++ G+ L V++G I + L RL L+ L DVI+ +P
Sbjct: 7 IILGLDPGLGTTGWGVIAAEGNRLRHVANGQIKTEPSMPLPRRLANLHAALYDVIRQQQP 66
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ AAVE+V N +A +TLKLGQAR I +L+ A A + V EY P+ +KKA +G G DKKQ
Sbjct: 67 DGAAVEEVLGNSNAQSTLKLGQARGIVLLAAAQAGLIVGEYHPSIVKKATVGTGGADKKQ 126
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYY--KIASQ 168
+ M+ L+P G DAADALA+A+ HA+H S + AS
Sbjct: 127 VQAMVGHLLPGVKLTGPDAADALAVAITHAHHLASARAMQRRASA 171
>gi|313206320|ref|YP_004045497.1| crossover junction endodeoxyribonuclease ruvc [Riemerella
anatipestifer DSM 15868]
gi|312445636|gb|ADQ81991.1| crossover junction endodeoxyribonuclease RuvC [Riemerella
anatipestifer DSM 15868]
gi|315023186|gb|EFT36197.1| Holliday junction resolvase [Riemerella anatipestifer RA-YM]
gi|325336235|gb|ADZ12509.1| Holliday junction resolvasome, endonuclease subunit [Riemerella
anatipestifer RA-GD]
Length = 184
Score = 165 bits (419), Expect = 1e-39, Method: Composition-based stats.
Identities = 53/161 (32%), Positives = 89/161 (55%), Gaps = 2/161 (1%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M+ I+GIDPG G+GI+ V + VS ++ + +L ++E +I
Sbjct: 1 MKVEKIILGIDPGTSVMGFGIISVLNQKMELVSINELILKKYPNHETKLKYIFERTLSLI 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
+ P+E A+E F K+ + LKLG+A+ +A+ + IP++EY+P IK A+ G G+
Sbjct: 61 DEFHPDEVALEAPFYGKNVQSMLKLGRAQGVAMAASLYRDIPITEYSPKKIKMAITGNGN 120
Query: 121 GDKKQIHMMLKMLMPESFFKG--KDAADALAIAVCHAYHAN 159
K+Q+ ML+ L+ F DA+D LA+AVCH +++
Sbjct: 121 ASKEQVAGMLQNLLKLKEFPTKYLDASDGLAVAVCHHFNSG 161
>gi|15639508|ref|NP_218958.1| Holliday junction nuclease (ruvC) [Treponema pallidum subsp.
pallidum str. Nichols]
gi|189025747|ref|YP_001933519.1| Holliday junction nuclease, subunit C [Treponema pallidum subsp.
pallidum SS14]
gi|6094207|sp|O83530|RUVC_TREPA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|238689326|sp|B2S3B1|RUVC_TREPS RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|3322809|gb|AAC65505.1| Holliday junction nuclease (ruvC) [Treponema pallidum subsp.
pallidum str. Nichols]
gi|189018322|gb|ACD70940.1| Holliday junction nuclease, subunit C [Treponema pallidum subsp.
pallidum SS14]
gi|291059894|gb|ADD72629.1| crossover junction endodeoxyribonuclease RuvC [Treponema pallidum
subsp. pallidum str. Chicago]
Length = 196
Score = 165 bits (419), Expect = 1e-39, Method: Composition-based stats.
Identities = 61/163 (37%), Positives = 97/163 (59%), Gaps = 1/163 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPGL TG+G+++ G +L ++ G IV+ Q A RL +++ L VI ++P
Sbjct: 18 IIVGIDPGLESTGYGVIEAGGGSLRCLTYGVIVTQSNQPSAARLRHIFDTLQQVISIYQP 77
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ AVE ++ K+ + L + QAR + +L+ A I V+EYAPN IKKA+ G+ +K+Q
Sbjct: 78 QYCAVETIYFAKNVTSALCVAQARGVVLLAMAQQHISVAEYAPNAIKKAITGIAQAEKRQ 137
Query: 126 IHMMLKMLMPESFFK-GKDAADALAIAVCHAYHANSGYYKIAS 167
+ ++K+L+ AADALA+AV H + S Y + S
Sbjct: 138 VQHLVKILLNLKDIPHPDHAADALAVAVTHVHCCMSSNYAVGS 180
>gi|299142645|ref|ZP_07035775.1| crossover junction endodeoxyribonuclease RuvC [Prevotella oris
C735]
gi|298575860|gb|EFI47736.1| crossover junction endodeoxyribonuclease RuvC [Prevotella oris
C735]
Length = 205
Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats.
Identities = 53/157 (33%), Positives = 83/157 (52%), Gaps = 3/157 (1%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG G+G++ V G+ + G I RL ++E +T +I+++ P
Sbjct: 9 IILGIDPGTNVMGYGVLRVNGNKAKMEAMGVIDLRKMHDPYLRLGHIFERVTGIIESYLP 68
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+E A+E F K+ + LKLG+A+ +AI + +P+ EYAP IK A+ G G K+Q
Sbjct: 69 DELAIEAPFFGKNVQSMLKLGRAQGVAIAAAIRRDVPIHEYAPLKIKMAITGQGQASKEQ 128
Query: 126 IHMMLKMLMPESF---FKGKDAADALAIAVCHAYHAN 159
+ ML+ ++ + DA DALA A CH
Sbjct: 129 VAGMLQRVLHLEEEDMPRFMDATDALAAAYCHFLQMG 165
>gi|296117348|ref|ZP_06835938.1| Holliday junction resolvase [Gluconacetobacter hansenii ATCC 23769]
gi|295976114|gb|EFG82902.1| Holliday junction resolvase [Gluconacetobacter hansenii ATCC 23769]
Length = 168
Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats.
Identities = 66/150 (44%), Positives = 102/150 (68%)
Query: 4 SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+RI+GIDPGLR TGWG+++ + L V+ G I + S+ RL L++ L ++ + +
Sbjct: 1 MVRILGIDPGLRFTGWGVIEARDNRLSHVADGVIATDAAMSVPLRLRHLHDALLELGRGF 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
P+EAA+E+ +VN++ ATLKLG AR + +L P L IPVSEY ++K++V+G G K
Sbjct: 61 APDEAAIEETYVNRNGAATLKLGYARGVGLLVPVLLDIPVSEYGAKSVKRSVVGTGAATK 120
Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVC 153
+Q+ MM++ L+P + K DAADALA+A+C
Sbjct: 121 EQVEMMVRRLLPTAIAKRSDAADALAVAIC 150
>gi|124010040|ref|ZP_01694702.1| crossover junction endodeoxyribonuclease RuvC [Microscilla marina
ATCC 23134]
gi|123983927|gb|EAY24322.1| crossover junction endodeoxyribonuclease RuvC [Microscilla marina
ATCC 23134]
Length = 188
Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats.
Identities = 55/163 (33%), Positives = 98/163 (60%), Gaps = 2/163 (1%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
IIGIDPG + G+G++ V G + V G I + A +L +++E ++ +++ + P
Sbjct: 9 IIIGIDPGTQLMGYGLILVKGKKVSVVQYGVIHLAKYSNHALKLKKIFERVSQLVEEYLP 68
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+E A+E F+ K+ A LKLG+A+ +A+ + + +IP++EYAP +K++V G G+ K+Q
Sbjct: 69 DEMALEAPFMGKNVQAALKLGRAQGVAMSAALVRQIPIAEYAPRKVKQSVTGSGNASKEQ 128
Query: 126 IHMMLKMLMPESFFKGK--DAADALAIAVCHAYHANSGYYKIA 166
+ ML+ + +F + DA+DAL +A+CH + G A
Sbjct: 129 VARMLEKQLNFTFHENDTLDASDALGVALCHYFQGKLGGMNKA 171
>gi|257452147|ref|ZP_05617446.1| crossover junction endodeoxyribonuclease ruvC [Fusobacterium sp.
3_1_5R]
gi|317058692|ref|ZP_07923177.1| crossover junction endodeoxyribonuclease ruvC [Fusobacterium sp.
3_1_5R]
gi|313684368|gb|EFS21203.1| crossover junction endodeoxyribonuclease ruvC [Fusobacterium sp.
3_1_5R]
Length = 189
Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats.
Identities = 43/136 (31%), Positives = 74/136 (54%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPG G+G++D V G I + + RL +++E L+ +I+ ++
Sbjct: 1 MRILGIDPGTAIVGYGVIDYEKGKFHVVDYGCIYTEKDLPMEDRLVKVHEELSSLIQKYQ 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
PEE AVE++F K+ + +GQAR + +L+ L + + Y P +K + G G +KK
Sbjct: 61 PEEMAVEELFYFKNNKTVISVGQARGVIVLTGRLHGLQIHSYTPLQVKMGITGYGRAEKK 120
Query: 125 QIHMMLKMLMPESFFK 140
QI M++ + S
Sbjct: 121 QIQQMVQRFLGLSEIP 136
>gi|332520041|ref|ZP_08396505.1| crossover junction endodeoxyribonuclease RuvC [Lacinutrix algicola
5H-3-7-4]
gi|332044600|gb|EGI80794.1| crossover junction endodeoxyribonuclease RuvC [Lacinutrix algicola
5H-3-7-4]
Length = 184
Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats.
Identities = 52/160 (32%), Positives = 83/160 (51%), Gaps = 1/160 (0%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M + I+GIDPG G+G++ V + F+ + +L ++E ++I
Sbjct: 1 MAEEKIILGIDPGTTIMGFGLIKVVNKKMHFLQLNELDLKKYDDHYLKLKLIFERTIELI 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
P+E A+E F K+ + LKLG+A+ +A+ + IPV+EYAP IK A+ G G+
Sbjct: 61 DTHHPDEIAIEAPFFGKNVQSMLKLGRAQGVAMAAGLSREIPVTEYAPKKIKMAITGNGN 120
Query: 121 GDKKQIHMMLKMLMPESF-FKGKDAADALAIAVCHAYHAN 159
K+Q+ ML+ ++ K DA D L AVCH Y+
Sbjct: 121 ASKEQVAKMLQGMLGIKKLPKNLDAMDGLGAAVCHFYNQG 160
>gi|257466060|ref|ZP_05630371.1| crossover junction endodeoxyribonuclease ruvC [Fusobacterium
gonidiaformans ATCC 25563]
gi|315917215|ref|ZP_07913455.1| crossover junction endodeoxyribonuclease ruvC [Fusobacterium
gonidiaformans ATCC 25563]
gi|313691090|gb|EFS27925.1| crossover junction endodeoxyribonuclease ruvC [Fusobacterium
gonidiaformans ATCC 25563]
Length = 189
Score = 165 bits (417), Expect = 2e-39, Method: Composition-based stats.
Identities = 43/136 (31%), Positives = 74/136 (54%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPG G+G++D V G I + + RL +++E L+ +I+ ++
Sbjct: 1 MRILGIDPGTAIVGYGVIDYEKGKFHVVDYGCIYTEKDLPMEDRLIKIHEELSSLIQKYQ 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
PEE AVE++F K+ + +GQAR + +L+ L + + Y P +K + G G +KK
Sbjct: 61 PEEMAVEELFYFKNNKTVISVGQARGVIVLTGRLHGLQIHSYTPLQVKMGITGYGRAEKK 120
Query: 125 QIHMMLKMLMPESFFK 140
QI M++ + S
Sbjct: 121 QIQQMVQRFLGLSEIP 136
>gi|294341438|emb|CAZ89855.1| Crossover junction endodeoxyribonuclease ruvC (Holliday junction
nuclease ruvC) (Holliday juction resolvase ruvC)
[Thiomonas sp. 3As]
Length = 195
Score = 165 bits (417), Expect = 3e-39, Method: Composition-based stats.
Identities = 67/173 (38%), Positives = 96/173 (55%), Gaps = 9/173 (5%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPGL TG+G++D G L + +SG I L RL L++G+++V +
Sbjct: 1 MRILGIDPGLNTTGYGVIDAQGQRLGYQASGAIRIPKGT-LPERLKTLFDGVSEVARQAG 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
E A VE VFVN + +TL LGQAR AI + +PV EY +KK+++G G K
Sbjct: 60 AEVAVVEIVFVNVNPQSTLLLGQARGAAIAALVAQGLPVVEYTALQLKKSIVGYGRASKS 119
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAY--------HANSGYYKIASQD 169
QI M+ L+ G DAADAL +A+CHA+ H S +++ D
Sbjct: 120 QIQEMVMRLLALPGQPGPDAADALGLAICHAHAQRGLAALHRASPTAGLSTAD 172
>gi|332978500|gb|EGK15211.1| crossover junction endoribonuclease subunit C [Psychrobacter sp.
1501(2011)]
Length = 194
Score = 165 bits (417), Expect = 3e-39, Method: Composition-based stats.
Identities = 64/160 (40%), Positives = 95/160 (59%), Gaps = 6/160 (3%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW-- 63
IIGIDPG R TG+GI+ GD L ++ +GTI + ++ + RL +++ G+T + +
Sbjct: 3 IIIGIDPGSRMTGYGIIHQKGDTLRYLDAGTIRTDTKE-MPERLKRIFNGITRITEYHLK 61
Query: 64 ---RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
P AAVEQVF+ ++ + LKLGQAR AI + + VSEY IK+AV G G
Sbjct: 62 YSDEPIHAAVEQVFMAENPDSALKLGQARGAAIAALVALDLEVSEYTARQIKQAVCGYGA 121
Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
DK Q+ M+ ++ +DAAD LA A+CHA+ ++S
Sbjct: 122 ADKIQVQEMVCRILKLDVTPQQDAADGLACAICHAHSSHS 161
>gi|189460820|ref|ZP_03009605.1| hypothetical protein BACCOP_01467 [Bacteroides coprocola DSM 17136]
gi|189432394|gb|EDV01379.1| hypothetical protein BACCOP_01467 [Bacteroides coprocola DSM 17136]
Length = 189
Score = 164 bits (416), Expect = 3e-39, Method: Composition-based stats.
Identities = 56/161 (34%), Positives = 81/161 (50%), Gaps = 3/161 (1%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG G+G++ V G V+ G I +L +YE + VI ++ P
Sbjct: 9 IILGIDPGTNIMGYGVLKVTGVKPQVVALGVIDLRKCTDPYLKLKHIYERVQGVISSYLP 68
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+E A+E F K+ + LKLG+A+ +AI++ IPV+EYAP IK A+ G G K+Q
Sbjct: 69 DELAIEAPFFGKNVQSMLKLGRAQGVAIVAALCRDIPVTEYAPLKIKMAITGNGQASKEQ 128
Query: 126 IHMMLKMLMPESFF---KGKDAADALAIAVCHAYHANSGYY 163
+ MLK ++ DA DAL A CH
Sbjct: 129 VADMLKRMLHIPESEMGPFMDATDALGAAYCHYLQMGRPAM 169
>gi|317503186|ref|ZP_07961247.1| crossover junction endoribonuclease subunit C [Prevotella salivae
DSM 15606]
gi|315665689|gb|EFV05295.1| crossover junction endoribonuclease subunit C [Prevotella salivae
DSM 15606]
Length = 203
Score = 164 bits (416), Expect = 3e-39, Method: Composition-based stats.
Identities = 54/157 (34%), Positives = 83/157 (52%), Gaps = 3/157 (1%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG G+G++ V G+ + G I RL ++E +T +I+++ P
Sbjct: 9 IILGIDPGTNLMGYGVLRVQGNRAKMEAMGVIDLRKMPDPYLRLGHIFERVTGIIESYLP 68
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+E A+E F K+ + LKLG+A+ +AI + IP+ EYAP IK A+ G G K+Q
Sbjct: 69 DELAIEAPFFGKNVQSMLKLGRAQGVAIAAAIHRDIPIHEYAPLKIKMAITGQGQSSKEQ 128
Query: 126 IHMMLKMLMPE---SFFKGKDAADALAIAVCHAYHAN 159
+ ML+ ++ + DA DALA A CH
Sbjct: 129 VAGMLQRVLNLKKEEMPRFMDATDALAAAYCHFLQMG 165
>gi|302335490|ref|YP_003800697.1| crossover junction endodeoxyribonuclease RuvC [Olsenella uli DSM
7084]
gi|301319330|gb|ADK67817.1| crossover junction endodeoxyribonuclease RuvC [Olsenella uli DSM
7084]
Length = 218
Score = 164 bits (416), Expect = 3e-39, Method: Composition-based stats.
Identities = 53/157 (33%), Positives = 90/157 (57%), Gaps = 1/157 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ I+GIDPGL TGWG+++ G + G I + ++L RL +Y+GL++ I ++
Sbjct: 1 MIILGIDPGLANTGWGVIETRGTLCRARAYGCISTSSSETLDRRLGAIYDGLSEAIGTYQ 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P + A+E++F ++ + L AR AI++ + + + EY P IK+AV+G G DK+
Sbjct: 61 PSQLAIEKIFFGENTRSALATAHARGAAIVACSRMGLEMGEYTPMQIKQAVVGTGSADKR 120
Query: 125 QIHMMLKMLMPES-FFKGKDAADALAIAVCHAYHANS 160
Q+ M++ ++ + ADALA AVCHA +
Sbjct: 121 QVIYMVRNILDLDHDPRPDHCADALAAAVCHANLTRT 157
>gi|289432334|ref|YP_003462207.1| crossover junction endodeoxyribonuclease RuvC [Dehalococcoides sp.
GT]
gi|288946054|gb|ADC73751.1| crossover junction endodeoxyribonuclease RuvC [Dehalococcoides sp.
GT]
Length = 167
Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats.
Identities = 64/165 (38%), Positives = 102/165 (61%), Gaps = 3/165 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPG G+GI++ A D L V ++ + RL +Y+GL +VI+ ++
Sbjct: 1 MRILGIDPGTLVVGYGIIEAANDELTLVGFSSLTPPACAPIPQRLAYIYKGLVEVIELYQ 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+E AVE F +K+ + L +G+A+A+A+L+ A +PV+EY+P IK V G G+ K+
Sbjct: 61 PDEVAVESPFADKNIKSALAIGKAQAVALLAAANHSLPVTEYSPACIKSRVAGSGNASKE 120
Query: 125 QIHMMLKMLMPESFFK-GKDAADALAIAVCHAYHANSGYYKIASQ 168
QI M+++L+ + DAADALA+A+CH H+ + I SQ
Sbjct: 121 QIQEMVRLLLNLAEIPQPNDAADALAVAICH--HSERAFTNIISQ 163
>gi|255530314|ref|YP_003090686.1| crossover junction endodeoxyribonuclease RuvC [Pedobacter heparinus
DSM 2366]
gi|255343298|gb|ACU02624.1| crossover junction endodeoxyribonuclease RuvC [Pedobacter heparinus
DSM 2366]
Length = 187
Score = 164 bits (415), Expect = 4e-39, Method: Composition-based stats.
Identities = 50/158 (31%), Positives = 87/158 (55%), Gaps = 1/158 (0%)
Query: 2 RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
+K I+GIDPG G+G++ G + ++ G + +L +++E +I
Sbjct: 5 KKERVIMGIDPGTSIMGYGVILERGSKIELITMGIVRMDHLDDHFLKLQRIFEKTVRLID 64
Query: 62 NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
++P+ A+E F K+ LKLG+A+ IA+ + IP++EYAP IK+++ G G
Sbjct: 65 EYKPDILALEAPFYGKNIQVMLKLGRAQGIAMAAALSKNIPINEYAPRKIKQSITGNGSA 124
Query: 122 DKKQIHMMLKMLMP-ESFFKGKDAADALAIAVCHAYHA 158
K+Q+ ML+ L+ + + DA D LA+AVCH++
Sbjct: 125 GKEQVAAMLQRLLNFKETPEFLDATDGLAVAVCHSFQK 162
>gi|307718818|ref|YP_003874350.1| crossover junction endodeoxyribonuclease ruvC [Spirochaeta
thermophila DSM 6192]
gi|306532543|gb|ADN02077.1| crossover junction endodeoxyribonuclease ruvC [Spirochaeta
thermophila DSM 6192]
Length = 169
Score = 164 bits (415), Expect = 5e-39, Method: Composition-based stats.
Identities = 50/165 (30%), Positives = 93/165 (56%), Gaps = 1/165 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
R +GIDPGL TG+G+++ G ++ +GTI + + + RL +++ + +++ + P
Sbjct: 3 RYLGIDPGLATTGYGVIETDGRGHKYIVAGTIRTSSSHTQSARLLKIFRHVQELLLKYAP 62
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
E +E++F ++ + + QA + L+ A+ IPV YAP +K+A++G G DK +
Sbjct: 63 EAIIMEELFFARNTTSAFYVAQAMGVVSLAAAMEDIPVYTYAPQMVKQAIVGHGRADKAE 122
Query: 126 IHMMLKMLMPESFFK-GKDAADALAIAVCHAYHANSGYYKIASQD 169
I L++L+ K A+DALAIA+CH + + + +D
Sbjct: 123 IQRFLRLLLDLPDTKMSDHASDALAIALCHVHQHGTPFAIQGGED 167
>gi|161511192|ref|NP_810577.2| Holliday junction resolvase [Bacteroides thetaiotaomicron VPI-5482]
gi|253571815|ref|ZP_04849220.1| holliday junction resolvase [Bacteroides sp. 1_1_6]
gi|298387606|ref|ZP_06997158.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides sp.
1_1_14]
gi|251838412|gb|EES66498.1| holliday junction resolvase [Bacteroides sp. 1_1_6]
gi|298259813|gb|EFI02685.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides sp.
1_1_14]
Length = 188
Score = 163 bits (414), Expect = 5e-39, Method: Composition-based stats.
Identities = 51/157 (32%), Positives = 82/157 (52%), Gaps = 3/157 (1%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG G+G++ V G ++ G I + +L ++E + +I+++ P
Sbjct: 9 IILGIDPGTTIMGYGVLRVKGTKPEMIAMGIIDLRKFANHYLKLRHIHERVLSIIESYLP 68
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+E A+E F K+ + LKLG+A+ +A+ IP++EYAP IK A+ G G K+Q
Sbjct: 69 DELAIEAPFFGKNVQSMLKLGRAQGVAMAVALSRDIPITEYAPLKIKMAITGNGQASKEQ 128
Query: 126 IHMMLKMLM---PESFFKGKDAADALAIAVCHAYHAN 159
+ ML+ ++ E DA D LA A CH
Sbjct: 129 VADMLQRMLHFPKEEMPTFMDATDGLAAAYCHFLQMG 165
>gi|94496898|ref|ZP_01303472.1| Holliday junction resolvasome endonuclease subunit [Sphingomonas
sp. SKA58]
gi|94423574|gb|EAT08601.1| Holliday junction resolvasome endonuclease subunit [Sphingomonas
sp. SKA58]
Length = 163
Score = 163 bits (414), Expect = 5e-39, Method: Composition-based stats.
Identities = 68/158 (43%), Positives = 104/158 (65%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ ++G+DPGL TGWG++ G+ L + +G I + +LA RL + LTD+I R
Sbjct: 1 MILLGLDPGLGTTGWGLIAADGNRLTHIGNGQIKTDAGMALATRLLAIDLALTDLILEHR 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ AAVE+VFVN + +TLKLGQAR + +L+ + + + V EYA +KK+V+GVG+ K
Sbjct: 61 PDGAAVEEVFVNVNPQSTLKLGQARGVVLLAASRSGMEVGEYAARLVKKSVVGVGNASKD 120
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGY 162
Q+H M++ ++P + G DAADALA+A+ HA+H S
Sbjct: 121 QVHAMVQRMLPGARIAGPDAADALAVAITHAHHLASAR 158
>gi|88602181|ref|YP_502359.1| Holliday junction resolvase [Methanospirillum hungatei JF-1]
gi|88187643|gb|ABD40640.1| crossover junction endodeoxyribonuclease RuvC [Methanospirillum
hungatei JF-1]
Length = 164
Score = 163 bits (414), Expect = 5e-39, Method: Composition-based stats.
Identities = 51/152 (33%), Positives = 84/152 (55%), Gaps = 2/152 (1%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQ-SLAFRLCQLYEGLTDVIKNWRP 65
++GIDPG R G+G+V + G I + + RL +Y+ + ++I+ + P
Sbjct: 8 VLGIDPGFARCGYGVVGKEKNTPVAYEWGCIETTPKTGDTPVRLLSIYDSIENLIRTYAP 67
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
A E++F +++ +++ +A+ + IL+ A +IPV EY P +K A+ G G DKKQ
Sbjct: 68 ACLACEKLFFSRNTTTAMQVSEAKGVIILAAAKHQIPVFEYTPKQVKLAITGSGLADKKQ 127
Query: 126 IHMMLKMLMPESFFK-GKDAADALAIAVCHAY 156
I MM+ L+ S DAAD LA+A+CH
Sbjct: 128 IQMMITRLLRLSEIPQPDDAADGLALALCHVN 159
>gi|160886386|ref|ZP_02067389.1| hypothetical protein BACOVA_04396 [Bacteroides ovatus ATCC 8483]
gi|237723258|ref|ZP_04553739.1| holliday junction resolvase [Bacteroides sp. 2_2_4]
gi|260173482|ref|ZP_05759894.1| Holliday junction resolvase [Bacteroides sp. D2]
gi|293372766|ref|ZP_06619147.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides ovatus
SD CMC 3f]
gi|298482941|ref|ZP_07001123.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides sp. D22]
gi|299146874|ref|ZP_07039942.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides sp.
3_1_23]
gi|315921752|ref|ZP_07917992.1| holliday junction resolvase [Bacteroides sp. D2]
gi|156108271|gb|EDO10016.1| hypothetical protein BACOVA_04396 [Bacteroides ovatus ATCC 8483]
gi|229447780|gb|EEO53571.1| holliday junction resolvase [Bacteroides sp. 2_2_4]
gi|292632275|gb|EFF50872.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides ovatus
SD CMC 3f]
gi|298270913|gb|EFI12492.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides sp. D22]
gi|298517365|gb|EFI41246.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides sp.
3_1_23]
gi|313695627|gb|EFS32462.1| holliday junction resolvase [Bacteroides sp. D2]
Length = 188
Score = 163 bits (414), Expect = 6e-39, Method: Composition-based stats.
Identities = 51/157 (32%), Positives = 82/157 (52%), Gaps = 3/157 (1%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG G+G++ V G ++ G I + +L ++E + +I+++ P
Sbjct: 9 IILGIDPGTTIMGYGVLRVKGTKPEMIAMGIIDLRKFANHYLKLRHIHERVLSIIESYLP 68
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+E A+E F K+ + LKLG+A+ +A+ IP++EYAP IK A+ G G K+Q
Sbjct: 69 DELAIEAPFFGKNVQSMLKLGRAQGVAMAVALSRDIPITEYAPLKIKMAITGNGQASKEQ 128
Query: 126 IHMMLKMLM---PESFFKGKDAADALAIAVCHAYHAN 159
+ ML+ ++ E DA D LA A CH
Sbjct: 129 VADMLQRMLRFPKEDMPTFMDATDGLAAAYCHFLQMG 165
>gi|296137140|ref|YP_003644382.1| crossover junction endodeoxyribonuclease RuvC [Thiomonas intermedia
K12]
gi|295797262|gb|ADG32052.1| crossover junction endodeoxyribonuclease RuvC [Thiomonas intermedia
K12]
Length = 195
Score = 163 bits (414), Expect = 6e-39, Method: Composition-based stats.
Identities = 67/173 (38%), Positives = 95/173 (54%), Gaps = 9/173 (5%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPGL TG+G++D G L + +SG I L RL L++G+++V +
Sbjct: 1 MRILGIDPGLNTTGYGVIDAHGQRLGYQASGAIRIPKGT-LPERLKTLFDGVSEVARLAD 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
E A VE VFVN + +TL LGQAR AI + +PV EY +KK+++G G K
Sbjct: 60 AEVAVVEIVFVNVNPQSTLLLGQARGAAIAALVAQGLPVVEYTALQLKKSIVGYGRASKS 119
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAY--------HANSGYYKIASQD 169
QI M+ L+ G DAADAL +A+CHA+ H S + + D
Sbjct: 120 QIQEMVMRLLALPGQPGPDAADALGLAICHAHAQRGLAALHRASSPANVGTAD 172
>gi|78187496|ref|YP_375539.1| crossover junction endodeoxyribonuclease RuvC [Chlorobium luteolum
DSM 273]
gi|123743620|sp|Q3B2D5|RUVC_PELLD RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|78167398|gb|ABB24496.1| Crossover junction endodeoxyribonuclease RuvC [Chlorobium luteolum
DSM 273]
Length = 191
Score = 163 bits (414), Expect = 6e-39, Method: Composition-based stats.
Identities = 46/150 (30%), Positives = 76/150 (50%), Gaps = 1/150 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ ++GIDPG TG+G+V + G + +S R+ +++E L +I +
Sbjct: 1 MIVLGIDPGSLSTGYGVVSTDDGRYRLLECGVLRLNPGKSHPARIGEIFEALDCLISRVQ 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P ++E FV ++ + LKLGQ R I + + EYAP +K AV G G K+
Sbjct: 61 PGRLSIETAFVGRNVQSALKLGQVRGAVIALGVHRGLMLHEYAPREVKLAVTGRGGASKE 120
Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVC 153
Q+ M+ ++ S K D DA+A+A+C
Sbjct: 121 QVAGMVTAMLGLGSVPKPLDVTDAIALALC 150
>gi|307565534|ref|ZP_07628014.1| crossover junction endodeoxyribonuclease RuvC [Prevotella amnii
CRIS 21A-A]
gi|307345693|gb|EFN91050.1| crossover junction endodeoxyribonuclease RuvC [Prevotella amnii
CRIS 21A-A]
Length = 193
Score = 163 bits (413), Expect = 7e-39, Method: Composition-based stats.
Identities = 52/157 (33%), Positives = 84/157 (53%), Gaps = 3/157 (1%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG G+G++ G+ + G I + + RL ++++ +T +I+ + P
Sbjct: 11 IILGIDPGTNVMGYGLLRAVGNKANLIVMGIIDMRKEKDIYLRLGKIFDRVTGIIEEYLP 70
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+E A+E F K+ + LKLG+A+ +AI + IP+ EYAP IK A+ G G K+Q
Sbjct: 71 DELAIEAPFFGKNVQSMLKLGRAQGVAIAAAIHHDIPIHEYAPLKIKMAITGNGAASKEQ 130
Query: 126 IHMMLKMLMPE---SFFKGKDAADALAIAVCHAYHAN 159
+ ML+ L+ DA DA+ A CH +N
Sbjct: 131 VANMLQKLLHLRDDQMPHFMDATDAVGAAYCHFLQSN 167
>gi|270307811|ref|YP_003329869.1| crossover junction endodeoxyribonuclease [Dehalococcoides sp. VS]
gi|270153703|gb|ACZ61541.1| crossover junction endodeoxyribonuclease [Dehalococcoides sp. VS]
Length = 165
Score = 163 bits (413), Expect = 7e-39, Method: Composition-based stats.
Identities = 60/165 (36%), Positives = 101/165 (61%), Gaps = 3/165 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPG G+G+++ A D L + ++ + RL +Y+GL + I+ ++
Sbjct: 1 MRILGIDPGTMVVGYGVIEAADDELSLIGFSSLTPPASAPIPQRLAYIYKGLVEAIELYQ 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+E AVE F +K+ + L +G+A+A+A+L+ A + V+EY+P IK V G G+ K+
Sbjct: 61 PDEVAVESPFADKNIKSALAIGKAQAVALLAAANHSLSVTEYSPACIKSRVSGSGNASKE 120
Query: 125 QIHMMLKMLMPESFFK-GKDAADALAIAVCHAYHANSGYYKIASQ 168
QI M+++L+ + DAADALA+A+CH H++ + I SQ
Sbjct: 121 QIQEMVRLLLNLAEIPQPNDAADALAVAICH--HSHRAFANITSQ 163
>gi|149277091|ref|ZP_01883233.1| Holliday junction resolvase [Pedobacter sp. BAL39]
gi|149231968|gb|EDM37345.1| Holliday junction resolvase [Pedobacter sp. BAL39]
Length = 187
Score = 163 bits (413), Expect = 7e-39, Method: Composition-based stats.
Identities = 50/158 (31%), Positives = 87/158 (55%), Gaps = 1/158 (0%)
Query: 2 RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
+K I+GIDPG G+G++ G + V+ G + +L +++E +I
Sbjct: 5 KKERVIMGIDPGTSIMGYGVILERGSKIELVTMGIVRMDHMDDHFLKLQRIFEKTVVLID 64
Query: 62 NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
++P+ A+E F K+ LKLG+A+ +A+ + IP++EYAP IK+++ G G
Sbjct: 65 EFKPDTMALEAPFYGKNIQVMLKLGRAQGVAMAAALSRNIPITEYAPRKIKQSITGNGSS 124
Query: 122 DKKQIHMMLKMLMP-ESFFKGKDAADALAIAVCHAYHA 158
K+Q+ ML+ L+ + + DA D LA+AVCH++
Sbjct: 125 GKEQVAAMLQRLLNFKETPEFLDATDGLAVAVCHSFQR 162
>gi|103485831|ref|YP_615392.1| crossover junction endodeoxyribonuclease RuvC [Sphingopyxis
alaskensis RB2256]
gi|123253592|sp|Q1GWB3|RUVC_SPHAL RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|98975908|gb|ABF52059.1| crossover junction endodeoxyribonuclease RuvC [Sphingopyxis
alaskensis RB2256]
Length = 156
Score = 163 bits (413), Expect = 8e-39, Method: Composition-based stats.
Identities = 65/155 (41%), Positives = 96/155 (61%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ I+G+DP L TGWG++ V G + +++G I + + +L RL L L VI +
Sbjct: 1 MIILGLDPSLSCTGWGLIRVEGSRISHIANGQIKTDAKAALPDRLVHLDTALAAVIADHA 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ AAVE+VFVN + +TLKL AR + +L A + V++YAP +KKA++G G K
Sbjct: 61 PKCAAVEEVFVNDNPQSTLKLAHARGVVLLGCARGGLTVTQYAPRLVKKAIVGTGGAAKG 120
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHAN 159
Q+ ML +L+P + G DAADALA+A+CHA H
Sbjct: 121 QVQAMLGVLLPGTKVAGPDAADALAVAICHANHRR 155
>gi|224540498|ref|ZP_03681037.1| hypothetical protein BACCELL_05411 [Bacteroides cellulosilyticus
DSM 14838]
gi|224517879|gb|EEF86984.1| hypothetical protein BACCELL_05411 [Bacteroides cellulosilyticus
DSM 14838]
Length = 189
Score = 163 bits (412), Expect = 9e-39, Method: Composition-based stats.
Identities = 51/157 (32%), Positives = 82/157 (52%), Gaps = 3/157 (1%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG G+G++ V G ++ G I +L ++E + +I+++ P
Sbjct: 9 IILGIDPGTTIMGYGVLRVQGTKPEMIAMGIIDLRKMGDHYLKLRHIHERVLSIIESYLP 68
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+E A+E F K+ + LKLG+A+ +A+ + IP++EYAP IK A+ G G K+Q
Sbjct: 69 DELAIEAPFFGKNVQSMLKLGRAQGVAMAAALSRDIPITEYAPLKIKMAITGNGQASKEQ 128
Query: 126 IHMMLKMLM---PESFFKGKDAADALAIAVCHAYHAN 159
+ ML+ ++ E DA D LA A CH
Sbjct: 129 VADMLQRMLHFAKEDMPTFMDATDGLAAAYCHFLQMG 165
>gi|323345431|ref|ZP_08085654.1| crossover junction endoribonuclease subunit C [Prevotella oralis
ATCC 33269]
gi|323093545|gb|EFZ36123.1| crossover junction endoribonuclease subunit C [Prevotella oralis
ATCC 33269]
Length = 194
Score = 163 bits (412), Expect = 1e-38, Method: Composition-based stats.
Identities = 54/157 (34%), Positives = 81/157 (51%), Gaps = 3/157 (1%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG G+G++ V G V+ G I RL ++++ +T +I + P
Sbjct: 14 IILGIDPGTNVMGYGVIRVYGRTAQMVAMGVIDMRRELDPYIRLGKIFDRVTGIIDEYLP 73
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+E A+E F K+ + LKLG+A+ +AI + +P+ EYAP IK A+ G G K+Q
Sbjct: 74 DEMAIEAPFFGKNVQSMLKLGRAQGVAIAAAIHHDVPIHEYAPLKIKMAITGQGQASKEQ 133
Query: 126 IHMMLKMLM---PESFFKGKDAADALAIAVCHAYHAN 159
+ ML+ L+ K DA DAL A CH
Sbjct: 134 VAGMLQRLLRINGNDMPKFMDATDALGAAYCHFMQMG 170
>gi|224023778|ref|ZP_03642144.1| hypothetical protein BACCOPRO_00494 [Bacteroides coprophilus DSM
18228]
gi|224017000|gb|EEF75012.1| hypothetical protein BACCOPRO_00494 [Bacteroides coprophilus DSM
18228]
Length = 189
Score = 163 bits (412), Expect = 1e-38, Method: Composition-based stats.
Identities = 56/157 (35%), Positives = 82/157 (52%), Gaps = 3/157 (1%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG G+G++ V G ++ G I +L +YE + VI ++ P
Sbjct: 9 IILGIDPGTNIMGYGVLKVTGTRPQVMTLGVIDLRKCSDPYLKLKHIYERVQGVITSFLP 68
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+E A+E F K+ + LKLG+A+ +AI++ IPV+EYAP IK A+ G G K+Q
Sbjct: 69 DELAIEAPFFGKNVQSMLKLGRAQGVAIVAALCRDIPVTEYAPLKIKMAITGNGQASKEQ 128
Query: 126 IHMMLKMLMPESFF---KGKDAADALAIAVCHAYHAN 159
+ MLK ++ DA DALA A CH
Sbjct: 129 VADMLKRMLHIPASEMGPFMDATDALAAAYCHYLQMG 165
>gi|226945720|ref|YP_002800793.1| Holliday junction resolvase [Azotobacter vinelandii DJ]
gi|259495683|sp|C1DRG0|RUVC_AZOVD RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|226720647|gb|ACO79818.1| crossover junction endodeoxyribonuclease RuvC [Azotobacter
vinelandii DJ]
Length = 174
Score = 163 bits (412), Expect = 1e-38, Method: Composition-based stats.
Identities = 65/154 (42%), Positives = 99/154 (64%), Gaps = 1/154 (0%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
I+GIDPG R TG+G+V G +++SG I + SL RL +Y G+T++I++ P
Sbjct: 4 ILGIDPGSRITGFGVVRDGGRGCEYIASGCIRTGSG-SLPERLQAVYRGVTEIIRSHGPV 62
Query: 67 EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
+EQVF+ ++A + LKLGQAR AI++ A A + ++EY +K+A++G G DK+Q+
Sbjct: 63 TMGIEQVFMARNADSALKLGQARGAAIVAAAEAGLEIAEYTATQVKQAIVGSGGADKRQV 122
Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
MM+ L+ DA+DALAIA+CHA+H S
Sbjct: 123 QMMVMHLLRLVQKPQIDASDALAIALCHAHHRQS 156
>gi|313673193|ref|YP_004051304.1| crossover junction endodeoxyribonuclease ruvc [Calditerrivibrio
nitroreducens DSM 19672]
gi|312939949|gb|ADR19141.1| crossover junction endodeoxyribonuclease RuvC [Calditerrivibrio
nitroreducens DSM 19672]
Length = 164
Score = 163 bits (412), Expect = 1e-38, Method: Composition-based stats.
Identities = 57/150 (38%), Positives = 90/150 (60%), Gaps = 1/150 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ I+GIDPGL +TG G++ V NL ++ I + ++SL RL ++ GL+D+IK ++
Sbjct: 1 MIILGIDPGLNKTGVGVLKVDNKNLGYLHHFVIKTDPKESLVLRLKEITTGLSDIIKEFQ 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P AAVE +F + + + + LGQ R I + + + V EY IKK+V+G G DK+
Sbjct: 61 PSYAAVEDIFYSVNIKSAILLGQTRGCIISTLVASGVEVMEYTALQIKKSVVGYGKADKE 120
Query: 125 QIHMMLKMLMPESFFKG-KDAADALAIAVC 153
Q+ M++ML+ DA+DALA A+C
Sbjct: 121 QVKKMVEMLLKIELRNTLNDASDALACAIC 150
>gi|189466727|ref|ZP_03015512.1| hypothetical protein BACINT_03102 [Bacteroides intestinalis DSM
17393]
gi|189434991|gb|EDV03976.1| hypothetical protein BACINT_03102 [Bacteroides intestinalis DSM
17393]
Length = 189
Score = 163 bits (412), Expect = 1e-38, Method: Composition-based stats.
Identities = 51/157 (32%), Positives = 82/157 (52%), Gaps = 3/157 (1%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG G+G++ V G ++ G I +L ++E + +I+++ P
Sbjct: 9 IILGIDPGTTIMGYGVLRVVGTKPEMIAMGIIDLRKFGDHYLKLRHIHERVLSIIESYLP 68
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+E A+E F K+ + LKLG+A+ +A+ + IP++EYAP IK A+ G G K+Q
Sbjct: 69 DELAIEAPFFGKNVQSMLKLGRAQGVAMAAALSRDIPITEYAPLKIKMAITGNGQASKEQ 128
Query: 126 IHMMLKMLM---PESFFKGKDAADALAIAVCHAYHAN 159
+ ML+ ++ E DA D LA A CH
Sbjct: 129 VADMLQRMLHFAKEDMPTFMDATDGLAAAYCHFLQMG 165
>gi|333030433|ref|ZP_08458494.1| Crossover junction endodeoxyribonuclease ruvC [Bacteroides
coprosuis DSM 18011]
gi|332741030|gb|EGJ71512.1| Crossover junction endodeoxyribonuclease ruvC [Bacteroides
coprosuis DSM 18011]
Length = 189
Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats.
Identities = 51/157 (32%), Positives = 79/157 (50%), Gaps = 3/157 (1%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG G+G++ V G + G I + +L ++E + +I ++ P
Sbjct: 9 IILGIDPGTTIMGYGVIRVNGTTPKMEAMGVIDMRKIKDHYLKLKHIHERVYGLIDSFLP 68
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+E A+E F K+ + LKLG+A+ IA+ IP++EYAP IK A+ G G K+Q
Sbjct: 69 DEVAIEAPFYGKNVQSMLKLGRAQGIAMAVALSRDIPITEYAPLKIKMAITGNGKASKEQ 128
Query: 126 IHMMLKMLM---PESFFKGKDAADALAIAVCHAYHAN 159
+ ML+ ++ DA D LA A CH
Sbjct: 129 VAEMLQRILRFDKSEMPVFLDATDGLAAAYCHYLQMG 165
>gi|110597083|ref|ZP_01385372.1| crossover junction endodeoxyribonuclease RuvC [Chlorobium
ferrooxidans DSM 13031]
gi|110341274|gb|EAT59739.1| crossover junction endodeoxyribonuclease RuvC [Chlorobium
ferrooxidans DSM 13031]
Length = 188
Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats.
Identities = 53/158 (33%), Positives = 81/158 (51%), Gaps = 1/158 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ ++GIDPG TG+G++ L ++SG I +S A R+ Q+Y L +I +
Sbjct: 1 MVVLGIDPGSLITGYGVIRQESGVLRVLASGVIRMQASRSHAERIGQIYRELDALITAFV 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ +E VF+NK+ + LKLGQ R I + + EYAP +K AV G G K+
Sbjct: 61 PDRVVLETVFLNKNVQSALKLGQVRGAVIALVMNRNLLLHEYAPREVKSAVTGRGSATKE 120
Query: 125 QIHMMLKMLMPESF-FKGKDAADALAIAVCHAYHANSG 161
Q+ M+ L+ + + D DAL IA+C S
Sbjct: 121 QVAFMVGRLLGLNPVPEPFDVTDALGIALCDLLRGESR 158
>gi|303233208|ref|ZP_07319881.1| crossover junction endodeoxyribonuclease RuvC [Atopobium vaginae
PB189-T1-4]
gi|302480793|gb|EFL43880.1| crossover junction endodeoxyribonuclease RuvC [Atopobium vaginae
PB189-T1-4]
Length = 217
Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats.
Identities = 55/165 (33%), Positives = 89/165 (53%), Gaps = 1/165 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ I+GIDPGL TGWGI++ G + G I + +SL RL +Y+G+ I +
Sbjct: 1 MIILGIDPGLAHTGWGIIETKGSVCRARAYGCITTHAAESLDRRLGSIYDGIEQAICTYA 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P E A+E++F ++ + + AR A+++ A A I + EY P IK+AV+G G DK+
Sbjct: 61 PAEVAIEKIFFGENTASAIATAHARGAALVACARAGIVLGEYTPMQIKQAVVGTGSADKR 120
Query: 125 QIHMMLKMLMPES-FFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
Q+ M++ ++ + ADALA A+CH ++ S
Sbjct: 121 QVIYMVRTILKLDHDPRPDHCADALAAAICHHNAQSTQRLAYKSA 165
>gi|189502161|ref|YP_001957878.1| Holliday junction resolvase [Candidatus Amoebophilus asiaticus 5a2]
gi|189497602|gb|ACE06149.1| hypothetical protein Aasi_0769 [Candidatus Amoebophilus asiaticus
5a2]
Length = 182
Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats.
Identities = 57/169 (33%), Positives = 97/169 (57%), Gaps = 2/169 (1%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDV 59
M + IIGIDPG + G+G++ V + G + S A +L ++++ ++
Sbjct: 1 MLQERIIIGIDPGTQVMGYGVIKVLQHQQFSILQYGILDLQQCPSHALKLQKIFKYTLEI 60
Query: 60 IKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVG 119
+ + P+EAA+E F K+ + LKLG+A+ +A+ + + +P++EYAP IK+A+ G G
Sbjct: 61 LDEFTPDEAALEAPFYGKNVQSMLKLGRAQGVAMAAALMREVPITEYAPRKIKQAITGNG 120
Query: 120 HGDKKQIHMMLKMLMP-ESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
+ K+Q+ ML ++P +S + DA DALA+AVCHAY + S
Sbjct: 121 NASKEQVAYMLMSMLPSKSMPEKLDATDALAVAVCHAYQQQGCNTRTTS 169
>gi|218130384|ref|ZP_03459188.1| hypothetical protein BACEGG_01973 [Bacteroides eggerthii DSM 20697]
gi|317473845|ref|ZP_07933125.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides
eggerthii 1_2_48FAA]
gi|217987385|gb|EEC53715.1| hypothetical protein BACEGG_01973 [Bacteroides eggerthii DSM 20697]
gi|316909922|gb|EFV31596.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides
eggerthii 1_2_48FAA]
Length = 189
Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats.
Identities = 52/157 (33%), Positives = 83/157 (52%), Gaps = 3/157 (1%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG G+G++ VAG ++ G I +L ++E + +I+++ P
Sbjct: 9 IILGIDPGTTIMGYGVLRVAGVKPEMIAMGIIDLRKFGDHYLKLRHIHERVLSIIESYLP 68
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+E A+E F K+ + LKLG+A+ +A+ + IP++EYAP IK A+ G G K+Q
Sbjct: 69 DELAIEAPFFGKNVQSMLKLGRAQGVAMAAALSRDIPITEYAPLKIKMAITGNGQASKEQ 128
Query: 126 IHMMLKMLM---PESFFKGKDAADALAIAVCHAYHAN 159
+ ML+ ++ E DA D LA A CH
Sbjct: 129 VADMLQRMLHFPKEEMPVFLDATDGLAAAYCHFLQMG 165
>gi|160888818|ref|ZP_02069821.1| hypothetical protein BACUNI_01237 [Bacteroides uniformis ATCC 8492]
gi|270293592|ref|ZP_06199794.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides sp. D20]
gi|317479439|ref|ZP_07938572.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides sp.
4_1_36]
gi|156861717|gb|EDO55148.1| hypothetical protein BACUNI_01237 [Bacteroides uniformis ATCC 8492]
gi|270275059|gb|EFA20919.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides sp. D20]
gi|316904405|gb|EFV26226.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides sp.
4_1_36]
Length = 189
Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats.
Identities = 52/157 (33%), Positives = 83/157 (52%), Gaps = 3/157 (1%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG G+G++ VAG ++ G I +L ++E + +I+++ P
Sbjct: 9 IILGIDPGTTIMGYGVLRVAGVKPEMIAMGIIDLRKFGDHYLKLRHIHERVLSIIESYLP 68
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+E A+E F K+ + LKLG+A+ +A+ + IP++EYAP IK A+ G G K+Q
Sbjct: 69 DELAIEAPFFGKNVQSMLKLGRAQGVAMAAALSRDIPITEYAPLKIKMAITGNGQASKEQ 128
Query: 126 IHMMLKMLM---PESFFKGKDAADALAIAVCHAYHAN 159
+ ML+ ++ E DA D LA A CH
Sbjct: 129 VADMLQRMLHFPKEDMPTFMDATDGLAAAYCHFLQMG 165
>gi|57234747|ref|YP_181187.1| crossover junction endodeoxyribonuclease RuvC [Dehalococcoides
ethenogenes 195]
gi|110287671|sp|Q3Z9B2|RUVC_DEHE1 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|57225195|gb|AAW40252.1| crossover junction endodeoxyribonuclease RuvC [Dehalococcoides
ethenogenes 195]
Length = 165
Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats.
Identities = 61/165 (36%), Positives = 101/165 (61%), Gaps = 3/165 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPG G+G+++ A D L + ++ + RL +Y+GL +VI+ ++
Sbjct: 1 MRILGIDPGTMVVGYGVIEAADDELSLIGFSSLTPPASAPIPQRLAYIYKGLVEVIELYQ 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+E AVE F +K+ + L +G+A+A+A+L+ A + V+EY+P IK V G G K+
Sbjct: 61 PDEVAVESPFADKNIKSALAIGKAQAVALLAAANHSLSVTEYSPACIKSRVSGSGTASKE 120
Query: 125 QIHMMLKMLMPESFFK-GKDAADALAIAVCHAYHANSGYYKIASQ 168
QI M+++L+ + DAADALA+A+CH H++ + I SQ
Sbjct: 121 QIQEMVRLLLNLAEIPQPNDAADALAVAICH--HSHRAFANITSQ 163
>gi|217034487|ref|ZP_03439898.1| hypothetical protein HP9810_873g3 [Helicobacter pylori 98-10]
gi|216943028|gb|EEC22507.1| hypothetical protein HP9810_873g3 [Helicobacter pylori 98-10]
Length = 157
Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats.
Identities = 49/154 (31%), Positives = 78/154 (50%), Gaps = 2/154 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPG R+ G+ I+ + L +++G I L ++ L E L ++ +
Sbjct: 1 MRILGIDPGSRKCGYAIISHTSNKLSLITAGFIN-ITTTRLQEQILDLIEALDCLLDRYE 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
E A+E +F + + +KL Q R L SEY P +KKA+ G G K+
Sbjct: 60 VNEVAIEDIFFGYNPKSVIKLAQFRGALSLKILERVGNFSEYTPLQVKKALTGNGKAAKE 119
Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYH 157
Q+ M+K L+ S K D +DA+A+A+ HA
Sbjct: 120 QVAFMVKRLLNITSEIKPLDISDAIAVAITHAQR 153
>gi|255010743|ref|ZP_05282869.1| Holliday junction resolvase [Bacteroides fragilis 3_1_12]
gi|313148549|ref|ZP_07810742.1| holliday junction resolvase [Bacteroides fragilis 3_1_12]
gi|313137316|gb|EFR54676.1| holliday junction resolvase [Bacteroides fragilis 3_1_12]
Length = 188
Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats.
Identities = 51/157 (32%), Positives = 82/157 (52%), Gaps = 3/157 (1%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG G+G++ V G ++ G I +L ++E + +I+++ P
Sbjct: 9 IILGIDPGTTIMGYGVLRVRGTKPEMIAMGIIDLRKFGDHYLKLRHIHERVLSIIESYLP 68
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+E A+E F K+ + LKLG+A+ +A+ + IP++EYAP IK A+ G G K+Q
Sbjct: 69 DELAIEAPFFGKNVQSMLKLGRAQGVAMAAALSRDIPITEYAPLKIKMAITGNGQASKEQ 128
Query: 126 IHMMLKMLM---PESFFKGKDAADALAIAVCHAYHAN 159
+ ML+ ++ E DA D LA A CH
Sbjct: 129 VADMLQRMLHFAKEDMPVFMDATDGLAAAYCHFLQMG 165
>gi|170726919|ref|YP_001760945.1| Holliday junction resolvase [Shewanella woodyi ATCC 51908]
gi|238688665|sp|B1KHG5|RUVC_SHEWM RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|169812266|gb|ACA86850.1| crossover junction endodeoxyribonuclease RuvC [Shewanella woodyi
ATCC 51908]
Length = 173
Score = 162 bits (410), Expect = 1e-38, Method: Composition-based stats.
Identities = 59/155 (38%), Positives = 99/155 (63%), Gaps = 1/155 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G + ++ SG I + +RL Q+++G++++I+ ++P
Sbjct: 3 IILGIDPGSRITGYGVIQCNGRSQIYLGSGCIRT-ASDDFPYRLKQIFDGVSEIIRQYQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
A+E+VF+ K+A + LKLGQAR AI++ A +PV+EY+ IK AV+G G +K Q
Sbjct: 62 NFFAIERVFLAKNADSALKLGQARGAAIVAATNADLPVAEYSATQIKSAVVGTGKAEKTQ 121
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
+ M++ ++ DAADAL +A+CH + + S
Sbjct: 122 VQHMVQQILKLPAAPQADAADALGVAICHFHTSQS 156
>gi|237712895|ref|ZP_04543376.1| holliday junction resolvase [Bacteroides sp. D1]
gi|262409664|ref|ZP_06086204.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides sp.
2_1_22]
gi|294643216|ref|ZP_06721043.1| putative crossover junction endodeoxyribonuclease RuvC [Bacteroides
ovatus SD CC 2a]
gi|294807169|ref|ZP_06765985.1| putative crossover junction endodeoxyribonuclease RuvC [Bacteroides
xylanisolvens SD CC 1b]
gi|229447014|gb|EEO52805.1| holliday junction resolvase [Bacteroides sp. D1]
gi|262352517|gb|EEZ01617.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides sp.
2_1_22]
gi|292641452|gb|EFF59643.1| putative crossover junction endodeoxyribonuclease RuvC [Bacteroides
ovatus SD CC 2a]
gi|294445620|gb|EFG14271.1| putative crossover junction endodeoxyribonuclease RuvC [Bacteroides
xylanisolvens SD CC 1b]
Length = 188
Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats.
Identities = 50/157 (31%), Positives = 82/157 (52%), Gaps = 3/157 (1%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG G+G++ V G ++ G I + +L ++E + +I+++ P
Sbjct: 9 IILGIDPGTTIMGYGVLRVRGTKPEMIAMGIIDLRKFANHYLKLRHIHERVLSIIESYLP 68
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+E A+E F K+ + LKLG+A+ +A+ IP++EYAP IK A+ G G K+Q
Sbjct: 69 DELAIEAPFFGKNVQSMLKLGRAQGVAMAVALSRDIPITEYAPLKIKMAITGNGQASKEQ 128
Query: 126 IHMMLKMLM---PESFFKGKDAADALAIAVCHAYHAN 159
+ ML+ ++ + DA D LA A CH
Sbjct: 129 VADMLQRMLRFSKDDMPTFMDATDGLAAAYCHFLQMG 165
>gi|167763317|ref|ZP_02435444.1| hypothetical protein BACSTE_01691 [Bacteroides stercoris ATCC
43183]
gi|167698611|gb|EDS15190.1| hypothetical protein BACSTE_01691 [Bacteroides stercoris ATCC
43183]
Length = 189
Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats.
Identities = 52/157 (33%), Positives = 83/157 (52%), Gaps = 3/157 (1%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG G+G++ VAG ++ G I +L ++E + +I+++ P
Sbjct: 9 IILGIDPGTTIMGYGVLRVAGTKPEMIAMGIIDFRKFGDHYLKLRHIHERVLGIIESYLP 68
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+E A+E F K+ + LKLG+A+ +A+ + IP++EYAP IK A+ G G K+Q
Sbjct: 69 DELAIEAPFFGKNVQSMLKLGRAQGVAMAAALSRDIPITEYAPLKIKMAITGNGQASKEQ 128
Query: 126 IHMMLKMLM---PESFFKGKDAADALAIAVCHAYHAN 159
+ ML+ ++ E DA D LA A CH
Sbjct: 129 VADMLQRMLHFPKEEMPVFMDATDGLAAAYCHFLQMG 165
>gi|260592445|ref|ZP_05857903.1| crossover junction endodeoxyribonuclease RuvC [Prevotella veroralis
F0319]
gi|260535491|gb|EEX18108.1| crossover junction endodeoxyribonuclease RuvC [Prevotella veroralis
F0319]
Length = 191
Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats.
Identities = 50/155 (32%), Positives = 85/155 (54%), Gaps = 3/155 (1%)
Query: 8 IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEE 67
+GIDPG G+G++ V G+ + + G I + + RL ++++ ++ +I+ + P+E
Sbjct: 13 LGIDPGTNVMGYGVLRVRGNKVELIVMGVIDMRREKDVYLRLGKIFDRVSGIIEEYLPDE 72
Query: 68 AAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIH 127
A+E F K+ + LKLG+A+ +AI + +P+ EYAP IK A+ G G K+Q+
Sbjct: 73 LAIEAPFFGKNVQSMLKLGRAQGVAIAAAIHHDVPIQEYAPLKIKMAITGNGSASKEQVA 132
Query: 128 MMLKMLMPE---SFFKGKDAADALAIAVCHAYHAN 159
ML+ L+ DA DA+A A CH +
Sbjct: 133 GMLQKLLHLRDNQMPHFMDATDAVAAAYCHFLQMS 167
>gi|329848090|ref|ZP_08263118.1| crossover junction endodeoxyribonuclease RuvC [Asticcacaulis
biprosthecum C19]
gi|328843153|gb|EGF92722.1| crossover junction endodeoxyribonuclease RuvC [Asticcacaulis
biprosthecum C19]
Length = 176
Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats.
Identities = 80/170 (47%), Positives = 107/170 (62%), Gaps = 4/170 (2%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M +RI+G+DPGLRR GWG++DV G L +V+ G I LA RL L+EG+ VI
Sbjct: 1 MMNRVRILGLDPGLRRLGWGVIDVEGARLSWVAHGVIEPPQGDDLAVRLLNLFEGVNAVI 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
W+P+EAA+E+ FVN + +TLKLG ARA A+L+PA A + V+EYA IKK+V+G G
Sbjct: 61 AQWQPDEAAIEETFVNMNPSSTLKLGHARAAAMLAPARAGLVVAEYAALDIKKSVVGAGR 120
Query: 121 GDKKQIHMMLKMLMPESFF----KGKDAADALAIAVCHAYHANSGYYKIA 166
+K Q+ M+K L+P + DAADALA AV HA+ K A
Sbjct: 121 AEKDQVLFMIKRLLPMAGKTEAGLPTDAADALACAVTHAHKRKMNGLKAA 170
>gi|298529993|ref|ZP_07017395.1| crossover junction endodeoxyribonuclease RuvC [Desulfonatronospira
thiodismutans ASO3-1]
gi|298509367|gb|EFI33271.1| crossover junction endodeoxyribonuclease RuvC [Desulfonatronospira
thiodismutans ASO3-1]
Length = 170
Score = 161 bits (409), Expect = 2e-38, Method: Composition-based stats.
Identities = 55/153 (35%), Positives = 92/153 (60%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
I+GIDPG R TG+G+V L + +GTI + + L+ RL ++ + +I + P+
Sbjct: 10 ILGIDPGSRCTGYGVVRETSGCLELLGTGTIRTNGQDDLSTRLDTIFTRICSLIHEFSPD 69
Query: 67 EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
+AAVE+VF +K+A + LKLGQAR I++ + ++PV Y P +KK+++G G K+Q+
Sbjct: 70 QAAVEEVFTSKNASSALKLGQARGAVIVACSHQKVPVYSYEPTLVKKSLVGGGRAGKEQV 129
Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHAN 159
M+ ++ +DA+DALA+A+ H
Sbjct: 130 AFMVAQMLGCKPRWAQDASDALAVAIAHLNQRR 162
>gi|325269874|ref|ZP_08136484.1| crossover junction endoribonuclease subunit C [Prevotella
multiformis DSM 16608]
gi|324987847|gb|EGC19820.1| crossover junction endoribonuclease subunit C [Prevotella
multiformis DSM 16608]
Length = 191
Score = 161 bits (409), Expect = 2e-38, Method: Composition-based stats.
Identities = 54/155 (34%), Positives = 85/155 (54%), Gaps = 3/155 (1%)
Query: 8 IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEE 67
+GIDPG G+G++ V+G+ V G I + + RL ++++ +T +I + P+E
Sbjct: 13 LGIDPGTNVMGYGVLRVSGNKAELVVMGVIDMRKERDVYLRLGKIFDRVTGIIDEFLPDE 72
Query: 68 AAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIH 127
A+E F K+ + LKLG+A+ +AI + +P+SEYAP IK A+ G G K+Q+
Sbjct: 73 LAIEAPFFGKNVQSMLKLGRAQGVAIAAAIHHDVPISEYAPLKIKLAITGNGSASKEQVA 132
Query: 128 MMLKMLMPE---SFFKGKDAADALAIAVCHAYHAN 159
ML+ L+ DA DA+A A CH N
Sbjct: 133 GMLQKLLHLRDDQMPHFMDATDAVAAAYCHFLQMN 167
>gi|261839310|gb|ACX99075.1| Holliday junction resolvase [Helicobacter pylori 52]
Length = 157
Score = 161 bits (409), Expect = 2e-38, Method: Composition-based stats.
Identities = 49/154 (31%), Positives = 78/154 (50%), Gaps = 2/154 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPG R+ G+ I+ + L +++G I L ++ L E L ++ +
Sbjct: 1 MRILGIDPGSRKCGYAIISHTSNKLSLITAGFIN-ITTTRLQEQILDLIEALDCLLDRYE 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
E A+E +F + + +KL Q R L SEY P +KKA+ G G K+
Sbjct: 60 VNEVAIEDIFFAYNPKSVIKLAQFRGALSLKILERIGNFSEYTPLQVKKALTGNGKATKE 119
Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYH 157
Q+ M+K L+ S K D +DA+A+A+ HA
Sbjct: 120 QVAFMVKRLLNITSEIKPLDISDAIAVAITHAQR 153
>gi|206900234|ref|YP_002251321.1| crossover junction endodeoxyribonuclease RuvC [Dictyoglomus
thermophilum H-6-12]
gi|226698752|sp|B5YFL3|RUVC_DICT6 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|206739337|gb|ACI18395.1| crossover junction endodeoxyribonuclease RuvC [Dictyoglomus
thermophilum H-6-12]
Length = 158
Score = 161 bits (409), Expect = 2e-38, Method: Composition-based stats.
Identities = 45/153 (29%), Positives = 82/153 (53%), Gaps = 1/153 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ +IG DPG TG+GI++ D + + G + + S+ RL L++ ++ ++ +
Sbjct: 1 MIVIGFDPGTAITGYGILNKEDDKIAVIEYGALTTPSNWSIGRRLNYLFDQVSSLLDLYN 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ +E+VF NK+ + +GQA+ + IL+ + VS P +K +V+G G K
Sbjct: 61 PDAVVMEEVFFNKNIKTAISIGQAQGVIILAAQQHQREVSILTPLEVKLSVVGYGRATKD 120
Query: 125 QIHMMLKMLMPES-FFKGKDAADALAIAVCHAY 156
Q+ M+K ++ K D ADALA+ + + Y
Sbjct: 121 QVQYMVKEVLKLKDIPKPDDVADALALCISYIY 153
>gi|329961042|ref|ZP_08299321.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides fluxus
YIT 12057]
gi|328532328|gb|EGF59132.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides fluxus
YIT 12057]
Length = 192
Score = 161 bits (409), Expect = 2e-38, Method: Composition-based stats.
Identities = 51/157 (32%), Positives = 82/157 (52%), Gaps = 3/157 (1%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG G+G++ V G ++ G I +L ++E + +I+++ P
Sbjct: 9 IILGIDPGTTIMGYGVLRVTGVKPEMIAMGIIDLRKFGDHYLKLRHIHERVLSIIESYLP 68
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+E A+E F K+ + LKLG+A+ +A+ + IP++EYAP IK A+ G G K+Q
Sbjct: 69 DELAIEAPFFGKNVQSMLKLGRAQGVAMAAALSRDIPITEYAPLKIKMAITGNGQASKEQ 128
Query: 126 IHMMLKMLM---PESFFKGKDAADALAIAVCHAYHAN 159
+ ML+ ++ E DA D LA A CH
Sbjct: 129 VADMLQRMLHFPKEDMPVFMDATDGLAAAYCHFLQMG 165
>gi|322382933|ref|ZP_08056765.1| hypothetical protein PL1_0639 [Paenibacillus larvae subsp. larvae
B-3650]
gi|321153053|gb|EFX45511.1| hypothetical protein PL1_0639 [Paenibacillus larvae subsp. larvae
B-3650]
Length = 155
Score = 161 bits (409), Expect = 2e-38, Method: Composition-based stats.
Identities = 49/144 (34%), Positives = 83/144 (57%), Gaps = 1/144 (0%)
Query: 17 TGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVN 76
G+G +D L V G+I + RL Q+YE +++ ++P+ A E++F N
Sbjct: 1 MGFGFIDKVSSRLVPVQYGSIQTEAYTDPGLRLKQVYEATGELLDKYKPDAVAFEKLFFN 60
Query: 77 KDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPE 136
++ +GQAR + IL+ +P++EY P +K+AV+G G +KKQ+ M++M +
Sbjct: 61 RNVTTAFSVGQARGVMILASVQRGLPIAEYTPLQVKQAVVGYGKAEKKQVQEMVRMFLKL 120
Query: 137 SF-FKGKDAADALAIAVCHAYHAN 159
S K D ADALA+A+CHA+ ++
Sbjct: 121 SAVPKPDDVADALAVAICHAHSSS 144
>gi|332673319|gb|AEE70136.1| crossover junction endoribonuclease subunit C [Helicobacter pylori
83]
Length = 168
Score = 161 bits (409), Expect = 2e-38, Method: Composition-based stats.
Identities = 49/156 (31%), Positives = 79/156 (50%), Gaps = 2/156 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPG R+ G+ I+ + L +++G I L ++ L E L ++ +
Sbjct: 9 MRILGIDPGSRKCGYAIISHTSNKLSLITAGFIN-ITTTRLQEQILDLIEALDCLLDRYE 67
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
E A+E +F + + +KL Q R L SEY P +KKA+ G G K+
Sbjct: 68 VNEVAIEDIFFGYNPKSVIKLAQFRGALSLKILERIGNFSEYTPLQVKKALTGNGKAAKE 127
Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHAN 159
Q+ M+K L+ S K D +DA+A+A+ HA +
Sbjct: 128 QVAFMVKRLLNITSEIKPLDISDAIAVAITHAQRTH 163
>gi|297380078|gb|ADI34965.1| crossover junction endodeoxyribonuclease RuvC [Helicobacter pylori
v225d]
Length = 157
Score = 161 bits (409), Expect = 2e-38, Method: Composition-based stats.
Identities = 49/154 (31%), Positives = 78/154 (50%), Gaps = 2/154 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPG R+ G+ I+ + L +++G I L ++ L E L ++ +
Sbjct: 1 MRILGIDPGSRKCGYAIISHTSNKLSLITAGFIN-ITTTRLQEQILDLIEALDCLLDRYE 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
E A+E +F + + +KL Q R L SEY P +KKA+ G G K+
Sbjct: 60 VNEVAIEDIFFGYNPKSVIKLAQFRGALSLKILERIGNFSEYTPLQVKKALTGNGKAAKE 119
Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYH 157
Q+ M+K L+ S K D +DA+A+A+ HA
Sbjct: 120 QVAFMVKRLLNITSEIKPLDISDAIAVAITHAQR 153
>gi|317178765|dbj|BAJ56553.1| Holliday junction resolvase [Helicobacter pylori F30]
Length = 157
Score = 161 bits (409), Expect = 2e-38, Method: Composition-based stats.
Identities = 49/154 (31%), Positives = 78/154 (50%), Gaps = 2/154 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPG R+ G+ I+ + L +++G I L ++ L E L ++ +
Sbjct: 1 MRILGIDPGSRKCGYAIISHTSNKLSLITAGFIN-ITTTRLQEQILDLIEALDCLLDRYE 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
E A+E +F + + +KL Q R L SEY P +KKA+ G G K+
Sbjct: 60 VNEVAIEDIFFGHNPKSVIKLAQFRGALSLKILERIGNFSEYTPLQVKKALTGNGKAAKE 119
Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYH 157
Q+ M+K L+ S K D +DA+A+A+ HA
Sbjct: 120 QVAFMVKRLLNITSEIKPLDISDAIAVAITHAQR 153
>gi|325856898|ref|ZP_08172396.1| crossover junction endodeoxyribonuclease RuvC [Prevotella denticola
CRIS 18C-A]
gi|327314586|ref|YP_004330023.1| crossover junction endodeoxyribonuclease RuvC [Prevotella denticola
F0289]
gi|325483271|gb|EGC86248.1| crossover junction endodeoxyribonuclease RuvC [Prevotella denticola
CRIS 18C-A]
gi|326944457|gb|AEA20342.1| crossover junction endodeoxyribonuclease RuvC [Prevotella denticola
F0289]
Length = 191
Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats.
Identities = 52/155 (33%), Positives = 82/155 (52%), Gaps = 3/155 (1%)
Query: 8 IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEE 67
+GIDPG G+G++ V G+ + G I + + RL ++++ +T +I + P+E
Sbjct: 13 LGIDPGTNVMGYGVLRVRGNKAELIVMGVIDMRKEKDVYLRLGKIFDRVTGIIDEYLPDE 72
Query: 68 AAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIH 127
A+E F K+ + LKLG+A+ +AI + +P+ EYAP IK A+ G G K Q+
Sbjct: 73 LAIEAPFFGKNVQSMLKLGRAQGVAIAAAIHHDVPICEYAPLKIKMAITGNGSASKDQVA 132
Query: 128 MMLKMLMPE---SFFKGKDAADALAIAVCHAYHAN 159
ML+ L+ DA DA+A A CH N
Sbjct: 133 GMLQKLLHLRDDQMPHFMDATDAVAAAYCHFLQMN 167
>gi|261880788|ref|ZP_06007215.1| crossover junction endoribonuclease subunit C [Prevotella bergensis
DSM 17361]
gi|270332566|gb|EFA43352.1| crossover junction endoribonuclease subunit C [Prevotella bergensis
DSM 17361]
Length = 198
Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats.
Identities = 50/167 (29%), Positives = 86/167 (51%), Gaps = 9/167 (5%)
Query: 1 MRKSIR------IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYE 54
M ++ R I+GIDPG G+G++ V + ++ G + +L +++E
Sbjct: 1 MAETRRQPAERIILGIDPGTNIMGYGVLRVLDNKPEMMALGVVDMRKMDDTYLKLGKIFE 60
Query: 55 GLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKA 114
+ +I + P+E A+E F +K+ + +KLG+A+ +AI + I + EYAP IK A
Sbjct: 61 RVIGIIDEYHPDEMAIEAPFYSKNVQSLIKLGRAQGVAISAAIHRDIFIHEYAPLKIKMA 120
Query: 115 VIGVGHGDKKQIHMMLKMLM---PESFFKGKDAADALAIAVCHAYHA 158
+ G G K+Q+ ML+ L+ + + DA DAL A CH +
Sbjct: 121 ITGQGQASKEQVASMLQKLLHISKDEMPRFMDATDALGAAYCHFLQS 167
>gi|315586457|gb|ADU40838.1| crossover junction endoribonuclease subunit C [Helicobacter pylori
35A]
Length = 160
Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats.
Identities = 49/156 (31%), Positives = 79/156 (50%), Gaps = 2/156 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPG R+ G+ I+ + L +++G I L ++ L E L ++ +
Sbjct: 1 MRILGIDPGSRKCGYAIISHTSNKLSLITAGFIN-ITTTRLQEQILDLIEALDCLLDRYE 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
E A+E +F + + +KL Q R L SEY P +KKA+ G G K+
Sbjct: 60 VNEVAIEDIFFGYNPKSVIKLAQFRGALSLKILERIGNFSEYTPLQVKKALTGNGKAAKE 119
Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHAN 159
Q+ M+K L+ S K D +DA+A+A+ HA +
Sbjct: 120 QVAFMVKRLLNITSEIKPLDISDAIAVAITHAQRTH 155
>gi|289661898|ref|ZP_06483479.1| Holliday junction resolvase [Xanthomonas campestris pv. vasculorum
NCPPB702]
gi|289669611|ref|ZP_06490686.1| Holliday junction resolvase [Xanthomonas campestris pv. musacearum
NCPPB4381]
Length = 174
Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats.
Identities = 62/158 (39%), Positives = 94/158 (59%), Gaps = 1/158 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
RI+GIDPG +RTG GI+D+ G V ++ + RL +L +GL ++I+ +R
Sbjct: 3 RILGIDPGSQRTGIGIIDIDEGGRSRHVHHAPLLLLGEGDFSQRLKRLLQGLGELIETYR 62
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P E A+E+VF+ K A + LKLG AR AI + + +PV EYA N +K A++G G DK
Sbjct: 63 PNEVAIEKVFMGKSAASALKLGHARGAAICAVVMRDLPVHEYAANEVKLALVGKGGADKV 122
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGY 162
Q+ M+ +++ DAADALA+A+ HA+ +
Sbjct: 123 QVQHMVGIMLNLKGKLQPDAADALAVAITHAHVRATAQ 160
>gi|212693428|ref|ZP_03301556.1| hypothetical protein BACDOR_02944 [Bacteroides dorei DSM 17855]
gi|237710485|ref|ZP_04540966.1| holliday junction resolvase [Bacteroides sp. 9_1_42FAA]
gi|237726992|ref|ZP_04557473.1| holliday junction resolvase [Bacteroides sp. D4]
gi|254884538|ref|ZP_05257248.1| holliday junction resolvase [Bacteroides sp. 4_3_47FAA]
gi|265756503|ref|ZP_06090709.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides sp.
3_1_33FAA]
gi|294778646|ref|ZP_06744068.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides vulgatus
PC510]
gi|319640770|ref|ZP_07995483.1| crossover junction endodeoxyribonuclease ruvC [Bacteroides sp.
3_1_40A]
gi|212664072|gb|EEB24646.1| hypothetical protein BACDOR_02944 [Bacteroides dorei DSM 17855]
gi|229433848|gb|EEO43925.1| holliday junction resolvase [Bacteroides dorei 5_1_36/D4]
gi|229455207|gb|EEO60928.1| holliday junction resolvase [Bacteroides sp. 9_1_42FAA]
gi|254837331|gb|EET17640.1| holliday junction resolvase [Bacteroides sp. 4_3_47FAA]
gi|263233691|gb|EEZ19306.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides sp.
3_1_33FAA]
gi|294447595|gb|EFG16173.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides vulgatus
PC510]
gi|317387582|gb|EFV68448.1| crossover junction endodeoxyribonuclease ruvC [Bacteroides sp.
3_1_40A]
Length = 189
Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats.
Identities = 51/157 (32%), Positives = 81/157 (51%), Gaps = 3/157 (1%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG G+G++ V G ++ G I +L +++E + +I+ + P
Sbjct: 9 IILGIDPGTTIMGYGLLKVVGTKPQVMTMGVIDLRKYGDHYLKLRRIFERVVGIIEAYLP 68
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+E A+E F K+ + LKLG+A+ +A+ + IP++EYAP IK A+ G G K+Q
Sbjct: 69 DELAIEAPFFGKNVQSMLKLGRAQGVAMAAALSRDIPITEYAPLKIKMAITGNGQASKEQ 128
Query: 126 IHMMLKMLMPESF---FKGKDAADALAIAVCHAYHAN 159
+ MLK ++ DA D LA A CH
Sbjct: 129 VADMLKRMLHIPESDMLPFMDATDGLAAAYCHYLQMG 165
>gi|207093361|ref|ZP_03241148.1| Holliday junction resolvase [Helicobacter pylori HPKX_438_AG0C1]
gi|207108708|ref|ZP_03242870.1| Holliday junction resolvase [Helicobacter pylori HPKX_438_CA4C1]
Length = 157
Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats.
Identities = 49/154 (31%), Positives = 78/154 (50%), Gaps = 2/154 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPG R+ G+ I+ + L +++G I L ++ L E L ++ +
Sbjct: 1 MRILGIDPGSRKCGYAIISHTSNKLSLITAGFIN-ITTTRLQEQILDLIEALDCLLDRYE 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
E A+E +F + + +KL Q R L SEY P +KKA+ G G K+
Sbjct: 60 VNEVAIEDIFFAYNPKSVIKLAQFRGALSLKILERIGNFSEYTPLQVKKALTGNGKATKE 119
Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYH 157
Q+ M+K L+ S K D +DA+A+A+ HA
Sbjct: 120 QVAFMVKRLLNITSEIKPLDISDAIAVAITHAQR 153
>gi|261837897|gb|ACX97663.1| Holliday junction endodeoxyribonuclease [Helicobacter pylori 51]
Length = 157
Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats.
Identities = 50/154 (32%), Positives = 79/154 (51%), Gaps = 2/154 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPG R+ G+ I+ A + L +++G I L ++ L E L ++ +
Sbjct: 1 MRILGIDPGSRKCGYAIISHASNKLSLITAGFIN-ITTTRLQEQILDLIEALDCLLDRYE 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
E A+E +F + + +KL Q R L SEY P +KKA+ G G K+
Sbjct: 60 VNEVAIEDIFFGYNPKSVIKLAQFRGALSLKILERIGNFSEYTPLQVKKALTGNGKAAKE 119
Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYH 157
Q+ M+K L+ S K D +DA+A+A+ HA
Sbjct: 120 QVAFMVKRLLNITSEIKPLDISDAIAVAITHAQR 153
>gi|329956855|ref|ZP_08297423.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides clarus
YIT 12056]
gi|328523612|gb|EGF50704.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides clarus
YIT 12056]
Length = 189
Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats.
Identities = 52/157 (33%), Positives = 83/157 (52%), Gaps = 3/157 (1%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG G+G++ VAG ++ G I +L ++E + +I+++ P
Sbjct: 9 IILGIDPGTTIMGYGVLRVAGVKPEMIAMGIIDLRKFGDHYLKLRHIHERVLSIIESYLP 68
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+E A+E F K+ + LKLG+A+ +A+ + IP++EYAP IK A+ G G K+Q
Sbjct: 69 DELAIEAPFFGKNVQSMLKLGRAQGVAMAAALSRDIPITEYAPLKIKMAITGNGQASKEQ 128
Query: 126 IHMMLKMLM---PESFFKGKDAADALAIAVCHAYHAN 159
+ ML+ ++ E DA D LA A CH
Sbjct: 129 VADMLQRMLHFPKEDMPVFMDATDGLAAAYCHFLQMG 165
>gi|317177295|dbj|BAJ55084.1| Holliday junction resolvase [Helicobacter pylori F16]
Length = 160
Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats.
Identities = 50/156 (32%), Positives = 79/156 (50%), Gaps = 2/156 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPG R+ G+ I+ + L +++G I L ++ L E L ++ +
Sbjct: 1 MRILGIDPGSRKCGYAIISHTSNKLSLITAGFIN-ITTTRLQEQILDLIEALDCLLDRYE 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
E A+E +F + + +KL Q R L SEY P +KKA+ G G K+
Sbjct: 60 VNEVAIEDIFFGYNPKSVIKLAQFRGALSLKILERIGNFSEYTPLQVKKALTGNGKAAKE 119
Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHAN 159
Q+ M+K L+ S K D +DA+AIA+ HA +
Sbjct: 120 QVAFMVKRLLNITSEIKPLDISDAIAIAITHAQRTH 155
>gi|317014285|gb|ADU81721.1| Holliday junction resolvase [Helicobacter pylori Gambia94/24]
Length = 157
Score = 161 bits (407), Expect = 3e-38, Method: Composition-based stats.
Identities = 49/154 (31%), Positives = 78/154 (50%), Gaps = 2/154 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPG R+ G+ I+ + L +++G I L ++ L E L ++ +
Sbjct: 1 MRILGIDPGSRKCGYAIISHVSNKLSLITAGFIN-ITTTRLQEQILDLIEALDCLLDRYE 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
E A+E +F + + +KL Q R L SEY P +KKA+ G G K+
Sbjct: 60 VHEVAIEDIFFGYNPKSVIKLAQFRGALSLKILERIGNFSEYTPLQVKKALTGNGKAAKE 119
Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYH 157
Q+ M+K L+ S K D +DA+A+A+ HA
Sbjct: 120 QVAFMVKRLLNITSEIKPLDISDAIAVAITHAQR 153
>gi|308062201|gb|ADO04089.1| Holliday junction resolvase [Helicobacter pylori Cuz20]
gi|308063329|gb|ADO05216.1| Holliday junction resolvase [Helicobacter pylori Sat464]
Length = 157
Score = 161 bits (407), Expect = 3e-38, Method: Composition-based stats.
Identities = 50/154 (32%), Positives = 78/154 (50%), Gaps = 2/154 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPG R+ G+ IV + L +++G I L ++ L E L ++ +
Sbjct: 1 MRILGIDPGSRKCGYAIVSHTSNKLSLITAGFIN-ITTTRLQEQILDLIEALDCLLDRYE 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
E A+E +F + + +KL Q R L SEY P +KKA+ G G K+
Sbjct: 60 VNEVAIEDIFFGYNPKSVIKLAQFRGALSLKILERIGNFSEYTPLQVKKALTGNGKAAKE 119
Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYH 157
Q+ M+K L+ S K D +DA+A+A+ HA
Sbjct: 120 QVAFMVKRLLNITSEIKPLDISDAIAVAITHAQR 153
>gi|317180639|dbj|BAJ58425.1| Holliday junction resolvase [Helicobacter pylori F32]
gi|317182185|dbj|BAJ59969.1| Holliday junction resolvase [Helicobacter pylori F57]
Length = 157
Score = 161 bits (407), Expect = 3e-38, Method: Composition-based stats.
Identities = 49/154 (31%), Positives = 78/154 (50%), Gaps = 2/154 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPG R+ G+ I+ + L +++G I L ++ L E L ++ +
Sbjct: 1 MRILGIDPGSRKCGYAIISHTSNKLSLITAGFIN-ITTTRLQEQILDLIEALDCLLDRYE 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
E A+E +F + + +KL Q R L SEY P +KKA+ G G K+
Sbjct: 60 VHEVAIEDIFFGYNPKSVIKLAQFRGALSLKILERIGNFSEYTPLQVKKALTGNGKAAKE 119
Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYH 157
Q+ M+K L+ S K D +DA+A+A+ HA
Sbjct: 120 QVAFMVKRLLNITSEIKPLDISDAIAVAITHAQR 153
>gi|15611878|ref|NP_223529.1| Holliday junction resolvase [Helicobacter pylori J99]
gi|6685959|sp|Q9ZKX3|RUVC_HELPJ RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|4155374|gb|AAD06385.1| CROSSOVER JUNCTION ENDODEOXYRIBONUCLEASE [Helicobacter pylori J99]
Length = 157
Score = 161 bits (407), Expect = 3e-38, Method: Composition-based stats.
Identities = 50/154 (32%), Positives = 79/154 (51%), Gaps = 2/154 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPG R+ G+ I+ A + L +++G I L ++ L E L ++ +
Sbjct: 1 MRILGIDPGSRKCGYAIISHASNKLSLITAGFIN-ITTTRLQEQILDLIEALDCLLDRYE 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
E A+E +F + + +KL Q R L SEY P +KKA+ G G K+
Sbjct: 60 VNEVAIEDIFFGYNPKSVIKLAQFRGALSLKILERIGNFSEYTPLQVKKALTGNGKAAKE 119
Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYH 157
Q+ M+K L+ S K D +DA+A+A+ HA
Sbjct: 120 QVAFMVKRLLNITSEIKPLDISDAIAVAITHAQR 153
>gi|290769834|gb|ADD61607.1| putative protein [uncultured organism]
Length = 189
Score = 161 bits (407), Expect = 4e-38, Method: Composition-based stats.
Identities = 47/160 (29%), Positives = 76/160 (47%), Gaps = 1/160 (0%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
+ GIDPG GWG ++ + + G I + RL +Y+ ++ RP+
Sbjct: 24 VFGIDPGYAIVGWGAINFQSNTYKTLGYGAIETVAGTDFNKRLEYIYDETYAILNRCRPD 83
Query: 67 EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
A+E+++ + + + QAR + +L+ +IP+ EY P +K AV G G K Q+
Sbjct: 84 ALAIEKLYFQTNQKTAINVAQARGVTLLAAQKLKIPIFEYTPLQVKTAVTGYGKAKKPQV 143
Query: 127 HMMLKMLMPE-SFFKGKDAADALAIAVCHAYHANSGYYKI 165
M L+ K D DALAIA+CH A S ++
Sbjct: 144 MEMTARLLKLKEIPKPDDTCDALAIAICHTQAAGSQLRRV 183
>gi|268317947|ref|YP_003291666.1| crossover junction endodeoxyribonuclease RuvC [Rhodothermus marinus
DSM 4252]
gi|262335481|gb|ACY49278.1| crossover junction endodeoxyribonuclease RuvC [Rhodothermus marinus
DSM 4252]
Length = 191
Score = 161 bits (407), Expect = 4e-38, Method: Composition-based stats.
Identities = 56/157 (35%), Positives = 92/157 (58%), Gaps = 3/157 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ I+GIDPG R TG+G++ V G+ ++ I + + RL +L+E L +++ +R
Sbjct: 11 LIILGIDPGSRHTGYGVLAVEGERARVLAVDVIHLDEQAAHPLRLLRLFEQLGAIVERYR 70
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+E A+E ++ + LKLG+A+A A+L+ +IP EY P +KKA+ G G+ K+
Sbjct: 71 PDECALEMPVYGRNPQSMLKLGRAQAAAMLAVLTRQIPTVEYTPKEVKKALTGRGNATKE 130
Query: 125 QIHMMLKMLMPES---FFKGKDAADALAIAVCHAYHA 158
Q+ M++ L+ DA+DALA+AVCH H
Sbjct: 131 QVRFMVQALLELPAEAARLALDASDALAVAVCHWQHR 167
>gi|257462966|ref|ZP_05627370.1| crossover junction endodeoxyribonuclease ruvC [Fusobacterium sp.
D12]
Length = 189
Score = 161 bits (407), Expect = 4e-38, Method: Composition-based stats.
Identities = 44/138 (31%), Positives = 74/138 (53%), Gaps = 1/138 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+R++GIDPG G+GI+D V G I + + RL +++E L+ +I+ +R
Sbjct: 1 MRVLGIDPGTAIVGYGIIDYEKGKFQIVDYGCIYTAKDLPMEDRLVKIHEELSALIEKYR 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
PEE AVE++F K+ + +GQAR + +L+ L + + Y P +K + G G +KK
Sbjct: 61 PEEMAVEELFYFKNNKTVISVGQARGVIVLTGRLHGLQMHAYTPLQVKMGITGYGRAEKK 120
Query: 125 QIHMMLKMLMPESF-FKG 141
QI M++ + K
Sbjct: 121 QIQQMVQRFLGLKELPKP 138
>gi|198274694|ref|ZP_03207226.1| hypothetical protein BACPLE_00850 [Bacteroides plebeius DSM 17135]
gi|198272141|gb|EDY96410.1| hypothetical protein BACPLE_00850 [Bacteroides plebeius DSM 17135]
Length = 189
Score = 161 bits (407), Expect = 4e-38, Method: Composition-based stats.
Identities = 54/157 (34%), Positives = 81/157 (51%), Gaps = 3/157 (1%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG G+G++ V G ++ G I +L +YE + +I ++ P
Sbjct: 9 IILGIDPGTNIMGYGVLKVTGVKPEVMTLGVIDLRKCTDSYLKLKHIYERVQGIISSYLP 68
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+E A+E F K+ + LKLG+A+ +AI++ IPV+EYAP IK A+ G G K+Q
Sbjct: 69 DELAIEAPFFGKNVQSMLKLGRAQGVAIVAALTRDIPVTEYAPLKIKMAITGNGQASKEQ 128
Query: 126 IHMMLKMLMPESFF---KGKDAADALAIAVCHAYHAN 159
+ MLK ++ DA DAL A CH
Sbjct: 129 VADMLKRMLHIPDSEMGPFMDATDALGAAYCHYLQMG 165
>gi|78188147|ref|YP_378485.1| crossover junction endodeoxyribonuclease RuvC [Chlorobium
chlorochromatii CaD3]
gi|90146448|sp|Q3AU83|RUVC_CHLCH RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|78170346|gb|ABB27442.1| Crossover junction endodeoxyribonuclease RuvC [Chlorobium
chlorochromatii CaD3]
Length = 192
Score = 161 bits (407), Expect = 4e-38, Method: Composition-based stats.
Identities = 49/162 (30%), Positives = 80/162 (49%), Gaps = 1/162 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ ++G+DPG +TG+G+V + +++G I S R+ + L VI ++
Sbjct: 1 MIVLGVDPGSLKTGYGVVQHHNGSFSVLAAGVIRLQAAWSHPERIGIICRELEQVIAEFQ 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
PE A+E F++ + A LKLGQ R I +P+ EYAP +K A+ G G K+
Sbjct: 61 PERVALETAFLSHNVQAALKLGQVRGAVIGLVVRYALPIYEYAPREVKSAITGKGAATKE 120
Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHANSGYYKI 165
Q+ M+ ++ + K D DAL IA+C S +
Sbjct: 121 QVAFMVSRMLSLHTVPKPHDVTDALGIALCDILRGESRQSGV 162
>gi|94970645|ref|YP_592693.1| crossover junction endodeoxyribonuclease RuvC [Candidatus
Koribacter versatilis Ellin345]
gi|123256221|sp|Q1IKI1|RUVC_ACIBL RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|94552695|gb|ABF42619.1| crossover junction endodeoxyribonuclease RuvC [Candidatus
Koribacter versatilis Ellin345]
Length = 166
Score = 161 bits (407), Expect = 4e-38, Method: Composition-based stats.
Identities = 56/158 (35%), Positives = 88/158 (55%), Gaps = 2/158 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGD-NLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R++GID G TG+GIV+ L + +G + R L +L +++ L VI+
Sbjct: 1 MRVMGIDCGSEYTGFGIVESDDRARLHCIVAGAVHLSARDPLENKLAKIFRELCSVIREH 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
PE A+E VF +A + LKLG R +A+L+ A + V+ YAP +K AV+G G +K
Sbjct: 61 DPEVVAIEDVFYAVNAKSALKLGHVRGVAMLAVAECGLRVATYAPLAVKSAVVGYGKAEK 120
Query: 124 KQIHMMLKMLMPESF-FKGKDAADALAIAVCHAYHANS 160
Q+ M+ L+ + D ADALAIA+CH + + +
Sbjct: 121 CQVQAMVARLLNLPQVPEPADVADALAIAICHLHTSAT 158
>gi|188527278|ref|YP_001909965.1| Holliday junction resolvase [Helicobacter pylori Shi470]
gi|238691910|sp|B2USV3|RUVC_HELPS RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|188143518|gb|ACD47935.1| Holliday junction resolvase [Helicobacter pylori Shi470]
Length = 157
Score = 160 bits (406), Expect = 5e-38, Method: Composition-based stats.
Identities = 50/154 (32%), Positives = 78/154 (50%), Gaps = 2/154 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPG R+ G+ IV + L +++G I L ++ L E L ++ +
Sbjct: 1 MRILGIDPGSRKCGYAIVSHTSNKLSLITAGFIN-ITTTRLQEQILDLIEALDCLLDRYE 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
E A+E +F + + +KL Q R L SEY P +KKA+ G G K+
Sbjct: 60 VHEVAIEDIFFGYNPKSVIKLAQFRGALSLKILERIGNFSEYTPLQVKKALTGNGKAAKE 119
Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYH 157
Q+ M+K L+ S K D +DA+A+A+ HA
Sbjct: 120 QVAFMVKRLLNITSEIKPLDISDAIAVAITHAQR 153
>gi|113970238|ref|YP_734031.1| Holliday junction resolvase [Shewanella sp. MR-4]
gi|114047573|ref|YP_738123.1| Holliday junction resolvase [Shewanella sp. MR-7]
gi|123030604|sp|Q0HUY9|RUVC_SHESR RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|123325053|sp|Q0HIZ3|RUVC_SHESM RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|113884922|gb|ABI38974.1| crossover junction endodeoxyribonuclease RuvC [Shewanella sp. MR-4]
gi|113889015|gb|ABI43066.1| crossover junction endodeoxyribonuclease RuvC [Shewanella sp. MR-7]
Length = 173
Score = 160 bits (406), Expect = 5e-38, Method: Composition-based stats.
Identities = 64/163 (39%), Positives = 105/163 (64%), Gaps = 2/163 (1%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+G+DPG R TG+G++ G ++ SG I + + L RL Q+++G++++I+ ++P
Sbjct: 3 IILGVDPGSRITGYGVIQCQGRQQLYLGSGCIRTS-GEDLPLRLKQIFDGISEIIRQYQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+E A+E+VF+ K+A + LKLGQAR AI++ +A +PV+EY+ IK AV+G G K+Q
Sbjct: 62 DEFAIERVFLAKNADSALKLGQARGAAIVAATVANLPVAEYSATQIKNAVVGTGRAKKEQ 121
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
+ M++ L+ DAADAL +AVCH YH N ++ +
Sbjct: 122 VQHMIQQLLKLPAAPQADAADALGVAVCH-YHTNQSLVALSGR 163
>gi|60682570|ref|YP_212714.1| Holliday junction resolvase [Bacteroides fragilis NCTC 9343]
gi|161936263|ref|YP_100540.2| Holliday junction resolvase [Bacteroides fragilis YCH46]
gi|253565051|ref|ZP_04842507.1| Holliday junction resolvase [Bacteroides sp. 3_2_5]
gi|265765990|ref|ZP_06094031.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides sp.
2_1_16]
gi|81314369|sp|Q5LAS7|RUVC_BACFN RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|60494004|emb|CAH08796.1| putative crossover junction endodeoxyribonuclease [Bacteroides
fragilis NCTC 9343]
gi|251946516|gb|EES86893.1| Holliday junction resolvase [Bacteroides sp. 3_2_5]
gi|263253658|gb|EEZ25123.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides sp.
2_1_16]
gi|301164046|emb|CBW23602.1| putative crossover junction endodeoxyribonuclease [Bacteroides
fragilis 638R]
Length = 188
Score = 160 bits (406), Expect = 5e-38, Method: Composition-based stats.
Identities = 51/157 (32%), Positives = 83/157 (52%), Gaps = 3/157 (1%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG G+G++ V G ++ G I + +L ++E + +I+++ P
Sbjct: 9 IILGIDPGTTIMGYGVLRVCGTRPEMIAMGIIDLRKFGNHYLKLRHIHERVLSIIESYLP 68
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+E A+E F K+ + LKLG+A+ +A+ + IP++EYAP IK A+ G G K+Q
Sbjct: 69 DELAIEAPFFGKNVQSMLKLGRAQGVAMAAALSRDIPITEYAPLKIKMAITGNGQASKEQ 128
Query: 126 IHMMLKMLM---PESFFKGKDAADALAIAVCHAYHAN 159
+ ML+ ++ E DA D LA A CH
Sbjct: 129 VADMLQRMLHFAKEDMPVFMDATDGLAAAYCHFLQMG 165
>gi|34541016|ref|NP_905495.1| Holliday junction resolvase [Porphyromonas gingivalis W83]
gi|44888374|sp|Q7MUZ6|RUVC_PORGI RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|34397331|gb|AAQ66394.1| crossover junction endodeoxyribonuclease RuvC [Porphyromonas
gingivalis W83]
Length = 189
Score = 160 bits (406), Expect = 5e-38, Method: Composition-based stats.
Identities = 53/172 (30%), Positives = 90/172 (52%), Gaps = 4/172 (2%)
Query: 1 MRKSIRI-IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDV 59
M RI +G+DPG G+G++ V G+ ++ G I + RL ++++ +T +
Sbjct: 1 MSPKERIIMGVDPGTILMGYGMLHVVGNTPRLMAMGVIRLEKFDNHYIRLKRIFDRITGL 60
Query: 60 IKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVG 119
I + P+E A+E F K+ + LKLG+A+ +A+ + IP++EYAP IK+A+ G G
Sbjct: 61 IDEFLPDEMAIEAPFFGKNVQSMLKLGRAQGVAMAAALARDIPITEYAPMRIKQAITGNG 120
Query: 120 HGDKKQIHMMLKMLMPESF---FKGKDAADALAIAVCHAYHANSGYYKIASQ 168
+ K+Q+ ML+ + DA D LA AVCH + + +
Sbjct: 121 NASKEQVAGMLQRYLRIPDEQMLPEMDATDGLAAAVCHFFQTSGPMARSGGS 172
>gi|217033157|ref|ZP_03438615.1| hypothetical protein HPB128_183g4 [Helicobacter pylori B128]
gi|298736584|ref|YP_003729110.1| crossover junction endodeoxyribonuclease RuvC [Helicobacter pylori
B8]
gi|216945117|gb|EEC23817.1| hypothetical protein HPB128_183g4 [Helicobacter pylori B128]
gi|298355774|emb|CBI66646.1| crossover junction endodeoxyribonuclease RuvC [Helicobacter pylori
B8]
Length = 157
Score = 160 bits (406), Expect = 5e-38, Method: Composition-based stats.
Identities = 50/154 (32%), Positives = 79/154 (51%), Gaps = 2/154 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPG R+ G+ I+ A + L +++G I L ++ L E L ++ +
Sbjct: 1 MRILGIDPGSRKCGYAIISHASNKLSLITAGFIN-ITTTRLQEQILDLIEALDCLLDRYE 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
E A+E +F + + +KL Q R L SEY P +KKA+ G G K+
Sbjct: 60 VNEVAIEDIFFGYNPKSVIKLAQFRGALSLKILERIGNFSEYTPLQVKKALTGNGKAAKE 119
Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYH 157
Q+ M+K L+ S K D +DA+A+A+ HA
Sbjct: 120 QVAFMVKRLLNITSEIKPLDISDAIAVAITHAQR 153
>gi|317009115|gb|ADU79695.1| Holliday junction resolvase [Helicobacter pylori India7]
Length = 157
Score = 160 bits (406), Expect = 5e-38, Method: Composition-based stats.
Identities = 49/154 (31%), Positives = 79/154 (51%), Gaps = 2/154 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPG R+ G+ I+ + L +++G I L ++ L E L ++ +
Sbjct: 1 MRILGIDPGSRKCGYAIISHTSNKLSLITAGFIN-ITTTRLQEQILDLIEALDCLLDRYE 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
+E A+E +F + + +KL Q R L SEY P +KKA+ G G K+
Sbjct: 60 VDEVAIEDIFFAYNPKSVIKLAQFRGALSLKILERIGNFSEYTPLQVKKALTGNGKAAKE 119
Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYH 157
Q+ M+K L+ S K D +DA+A+A+ HA
Sbjct: 120 QVAFMVKRLLNITSEIKPLDISDAIAVAITHAQR 153
>gi|317060583|ref|ZP_07925068.1| crossover junction endodeoxyribonuclease ruvC [Fusobacterium sp.
D12]
gi|313686259|gb|EFS23094.1| crossover junction endodeoxyribonuclease ruvC [Fusobacterium sp.
D12]
Length = 191
Score = 160 bits (406), Expect = 6e-38, Method: Composition-based stats.
Identities = 44/139 (31%), Positives = 74/139 (53%), Gaps = 1/139 (0%)
Query: 4 SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R++GIDPG G+GI+D V G I + + RL +++E L+ +I+ +
Sbjct: 2 KMRVLGIDPGTAIVGYGIIDYEKGKFQIVDYGCIYTAKDLPMEDRLVKIHEELSALIEKY 61
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
RPEE AVE++F K+ + +GQAR + +L+ L + + Y P +K + G G +K
Sbjct: 62 RPEEMAVEELFYFKNNKTVISVGQARGVIVLTGRLHGLQMHAYTPLQVKMGITGYGRAEK 121
Query: 124 KQIHMMLKMLMPESF-FKG 141
KQI M++ + K
Sbjct: 122 KQIQQMVQRFLGLKELPKP 140
>gi|296274671|ref|YP_003657302.1| crossover junction endodeoxyribonuclease RuvC [Arcobacter
nitrofigilis DSM 7299]
gi|296098845|gb|ADG94795.1| crossover junction endodeoxyribonuclease RuvC [Arcobacter
nitrofigilis DSM 7299]
Length = 157
Score = 160 bits (405), Expect = 6e-38, Method: Composition-based stats.
Identities = 51/158 (32%), Positives = 80/158 (50%), Gaps = 4/158 (2%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M+K +I+GIDPG G+ +++ +NL +G I + L ++ ++ EGL +
Sbjct: 1 MKK--KILGIDPGTINCGYAVIEKERNNLRLCEAGLIKIKSKI-LQEQIVEMVEGLDLIF 57
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
+N E A+E +F + + +KL Q R L SEY P +KKAV G G
Sbjct: 58 ENHEINEVAIEDMFYAFNPKSVIKLAQFRGAISLKVLQKFGNFSEYTPLQVKKAVTGNGK 117
Query: 121 GDKKQIHMMLKMLMP-ESFFKGKDAADALAIAVCHAYH 157
K+Q+ M+K L+ + K D DA+AIA+ HA
Sbjct: 118 AAKEQVAFMVKRLLGIKKEIKPLDITDAIAIALTHAQR 155
>gi|255692852|ref|ZP_05416527.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides
finegoldii DSM 17565]
gi|260621418|gb|EEX44289.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides
finegoldii DSM 17565]
Length = 188
Score = 160 bits (405), Expect = 6e-38, Method: Composition-based stats.
Identities = 49/157 (31%), Positives = 82/157 (52%), Gaps = 3/157 (1%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG G+G++ + G ++ G I + +L ++E + +I+++ P
Sbjct: 9 IILGIDPGTTIMGYGVLRIKGTKPEMIAMGIIDLRKFANHYLKLRHIHERVLSIIESYLP 68
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+E A+E F K+ + LKLG+A+ +A+ + IP+ EYAP IK A+ G G ++Q
Sbjct: 69 DELAIEAPFFGKNVQSMLKLGRAQGVAMAAALSRDIPIIEYAPLKIKMAITGNGQASEEQ 128
Query: 126 IHMMLKMLMPESF---FKGKDAADALAIAVCHAYHAN 159
+ ML+ ++ S DA D LA A CH
Sbjct: 129 VADMLQRMLHFSKADMPTFMDATDGLAAAYCHFLQMG 165
>gi|282892420|ref|ZP_06300770.1| hypothetical protein pah_c253o046 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|281497822|gb|EFB40183.1| hypothetical protein pah_c253o046 [Parachlamydia acanthamoebae str.
Hall's coccus]
Length = 164
Score = 160 bits (405), Expect = 6e-38, Method: Composition-based stats.
Identities = 51/157 (32%), Positives = 81/157 (51%), Gaps = 1/157 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
++IIGIDPG TG+GI G N + G I L+ R +Y+ + +++
Sbjct: 1 MKIIGIDPGTNITGYGIASFDGFNFSAIDYGCIRPPSSLKLSDRYLIIYDSIAHLLEQHT 60
Query: 65 PEEAAVEQVFVNK-DAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
+ VE F +K + + +KLG AR I++ +IPV EY+P +K A +G GH K
Sbjct: 61 VDALVVETQFASKANPQSGIKLGMARGAIIIAAKKRQIPVYEYSPTQVKLAAVGYGHASK 120
Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
Q+ M++ + DAADALA+ +C+ Y +
Sbjct: 121 HQVQAMIQSQFQLNQLPPPDAADALALTLCYMYSHKN 157
>gi|58584954|ref|YP_198527.1| Holliday junction resolvasome, endonuclease subunit, RuvC
[Wolbachia endosymbiont strain TRS of Brugia malayi]
gi|75497659|sp|Q5GRT9|RUVC_WOLTR RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|58419270|gb|AAW71285.1| Holliday junction resolvasome, endonuclease subunit, RuvC
[Wolbachia endosymbiont strain TRS of Brugia malayi]
Length = 162
Score = 160 bits (405), Expect = 6e-38, Method: Composition-based stats.
Identities = 66/160 (41%), Positives = 101/160 (63%), Gaps = 1/160 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGD-NLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
RIIG+DPG+ +TGW I+D+ N+ F+ SGTI + + + RL ++E L VI +
Sbjct: 3 RIIGLDPGMSKTGWAIIDMDERSNIEFLGSGTISTGNKLGMGERLHVIFEQLKKVISLYS 62
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P EAA+E++FVNK+ ++L LG AR I IL + + ++EY N +KK++ G GH DK
Sbjct: 63 PSEAAIEKIFVNKNPKSSLTLGYARGIVILVLEITELTMNEYDTNYVKKSITGNGHADKD 122
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYK 164
Q+ M+K ++ K AADALA+A+CH Y +S + +
Sbjct: 123 QVIFMVKQIIKNLNIKCHHAADALAVAICHVYTKSSYFVR 162
>gi|307637566|gb|ADN80016.1| Crossover junction endo deoxyribonuclease [Helicobacter pylori 908]
gi|325996157|gb|ADZ51562.1| Crossover junction endodeoxyribonuclease [Helicobacter pylori 2018]
gi|325997753|gb|ADZ49961.1| Crossover junction endodeoxyribonuclease [Helicobacter pylori 2017]
Length = 157
Score = 160 bits (405), Expect = 6e-38, Method: Composition-based stats.
Identities = 50/154 (32%), Positives = 79/154 (51%), Gaps = 2/154 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPG R+ G+ I+ A + L +++G I L ++ L E L ++ +
Sbjct: 1 MRILGIDPGSRKCGYAIISHASNKLSLITAGFIN-ITTTRLQEQILDLIEALDCLLDRYE 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
E A+E +F + + +KL Q R L SEY P +KKA+ G G K+
Sbjct: 60 VHEVAIEDIFFGYNPKSVIKLAQFRGALSLKILERIGNFSEYTPLQVKKALTGNGKAAKE 119
Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYH 157
Q+ M+K L+ S K D +DA+A+A+ HA
Sbjct: 120 QVAFMVKRLLNITSEIKPLDISDAIAVAITHAQR 153
>gi|188994977|ref|YP_001929229.1| Holliday junction resolvase [Porphyromonas gingivalis ATCC 33277]
gi|238691482|sp|B2RJT7|RUVC_PORG3 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|188594657|dbj|BAG33632.1| putative crossover junction endodeoxyribonuclease RuvC
[Porphyromonas gingivalis ATCC 33277]
Length = 189
Score = 160 bits (405), Expect = 6e-38, Method: Composition-based stats.
Identities = 54/172 (31%), Positives = 91/172 (52%), Gaps = 4/172 (2%)
Query: 1 MRKSIRI-IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDV 59
M RI +G+DPG G+G++ VAG+ ++ G I + RL ++++ +T +
Sbjct: 1 MSPKERIIMGVDPGTILMGYGMLHVAGNTPRLMAMGVIRLEKFDNHYIRLKRIFDRITGL 60
Query: 60 IKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVG 119
I + P+E A+E F K+ + LKLG+A+ +A+ + IP++EYAP IK+A+ G G
Sbjct: 61 IDEFLPDEMAIEAPFFGKNVQSMLKLGRAQGVAMAAALARDIPITEYAPMRIKQAITGNG 120
Query: 120 HGDKKQIHMMLKMLMPESF---FKGKDAADALAIAVCHAYHANSGYYKIASQ 168
+ K+Q+ ML+ + DA D LA AVCH + + +
Sbjct: 121 NASKEQVAGMLQRYLRIPDEQMLPEMDATDGLAAAVCHFFQTSGPMARSGGS 172
>gi|282880737|ref|ZP_06289438.1| crossover junction endodeoxyribonuclease RuvC [Prevotella
timonensis CRIS 5C-B1]
gi|281305399|gb|EFA97458.1| crossover junction endodeoxyribonuclease RuvC [Prevotella
timonensis CRIS 5C-B1]
Length = 196
Score = 160 bits (405), Expect = 7e-38, Method: Composition-based stats.
Identities = 50/157 (31%), Positives = 78/157 (49%), Gaps = 3/157 (1%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG G+G++ + ++ G I +L ++E +T +I + P
Sbjct: 12 IILGIDPGTNVMGYGVLRIVKGKPSMLAMGVIDMRKTGDPYLKLGHIFERVTGIIDEYLP 71
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+E A+E F K+ + LKLG+A+ +AI + IP+ EYAP IK ++ G G K+Q
Sbjct: 72 DEMAIEAPFFGKNVQSMLKLGRAQGVAIAAAIQHDIPIHEYAPLKIKMSITGQGQASKEQ 131
Query: 126 IHMMLKMLMPE---SFFKGKDAADALAIAVCHAYHAN 159
+ ML+ L+ DA DAL A CH
Sbjct: 132 VAGMLQRLLKIDAQEMPSFMDATDALGAAYCHFMQLG 168
>gi|15645496|ref|NP_207671.1| Holliday junction resolvase [Helicobacter pylori 26695]
gi|108563285|ref|YP_627601.1| Holliday junction resolvase [Helicobacter pylori HPAG1]
gi|254779156|ref|YP_003057261.1| Holliday junction resolvase [Helicobacter pylori B38]
gi|3914941|sp|O25544|RUVC_HELPY RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|123073769|sp|Q1CSZ5|RUVC_HELPH RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|2314012|gb|AAD07925.1| Holliday junction endodeoxyribonuclease (ruvC) [Helicobacter pylori
26695]
gi|107837058|gb|ABF84927.1| Holliday junction endodeoxyribonuclease [Helicobacter pylori HPAG1]
gi|254001067|emb|CAX29014.1| Crossover junction endodeoxyribonuclease RuvC (Holliday junction
nuclease RuvC) (Holliday juction resolvase RuvC)
[Helicobacter pylori B38]
Length = 157
Score = 160 bits (405), Expect = 7e-38, Method: Composition-based stats.
Identities = 50/154 (32%), Positives = 79/154 (51%), Gaps = 2/154 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPG R+ G+ I+ A + L +++G I L ++ L E L ++ +
Sbjct: 1 MRILGIDPGSRKCGYAIISHASNKLSLITAGFIN-ITTTRLQEQILDLIEALDCLLDRYE 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
E A+E +F + + +KL Q R L SEY P +KKA+ G G K+
Sbjct: 60 VNEVAIEDIFFGYNPKSVIKLAQFRGALSLKILERIGNFSEYTPLQVKKALTGNGKAAKE 119
Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYH 157
Q+ M+K L+ S K D +DA+A+A+ HA
Sbjct: 120 QVAFMVKRLLNITSEIKPLDISDAIAVAITHAQR 153
>gi|323698441|ref|ZP_08110353.1| crossover junction endodeoxyribonuclease RuvC [Desulfovibrio sp.
ND132]
gi|323458373|gb|EGB14238.1| crossover junction endodeoxyribonuclease RuvC [Desulfovibrio
desulfuricans ND132]
Length = 167
Score = 160 bits (405), Expect = 7e-38, Method: Composition-based stats.
Identities = 61/160 (38%), Positives = 95/160 (59%), Gaps = 1/160 (0%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M + + ++G+DPG R TG+GIV V +GTI + VR+ +A R+ L+ L ++I
Sbjct: 1 MAEGLVVLGLDPGTRVTGYGIVRELSGKAELVDTGTIRTPVREDMATRMGVLFNRLQELI 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
+ P EAA+E VFV+K+ + LKLGQAR + + A+ IP+ EY P+ +KK ++G+G
Sbjct: 61 RLHAPAEAAIENVFVSKNPSSALKLGQARGACMAACAVHNIPMGEYEPSKVKKNLVGLGS 120
Query: 121 GDKKQIHMMLKMLMPESFF-KGKDAADALAIAVCHAYHAN 159
K Q+ M+ + +DA+DALAIA+CH
Sbjct: 121 APKSQVAYMVAHCLGVKKPDWPEDASDALAIAICHLNERR 160
>gi|288802195|ref|ZP_06407635.1| crossover junction endodeoxyribonuclease RuvC [Prevotella
melaninogenica D18]
gi|302346585|ref|YP_003814883.1| crossover junction endodeoxyribonuclease RuvC [Prevotella
melaninogenica ATCC 25845]
gi|288335162|gb|EFC73597.1| crossover junction endodeoxyribonuclease RuvC [Prevotella
melaninogenica D18]
gi|302150436|gb|ADK96697.1| crossover junction endodeoxyribonuclease RuvC [Prevotella
melaninogenica ATCC 25845]
Length = 191
Score = 160 bits (405), Expect = 7e-38, Method: Composition-based stats.
Identities = 53/155 (34%), Positives = 82/155 (52%), Gaps = 3/155 (1%)
Query: 8 IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEE 67
+GIDPG G+G++ V G+ V G I + + RL +++E +T +I + P+E
Sbjct: 13 LGIDPGTNVMGYGVLRVCGNKAELVVMGVIDMRREKDVYLRLGRIFERVTGIIDEYLPDE 72
Query: 68 AAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIH 127
AVE F K+ + LKLG+A+ + I + +P+ EYAP IK A+ G G K+Q+
Sbjct: 73 VAVEAPFFGKNVQSMLKLGRAQGVVIAAAINHDVPIQEYAPLKIKMAITGNGSASKEQVA 132
Query: 128 MMLKMLMPE---SFFKGKDAADALAIAVCHAYHAN 159
ML+ L+ DA DA+A A CH +
Sbjct: 133 GMLQKLLHLRDDQMPHFMDATDAVAAAYCHFLQMS 167
>gi|123966378|ref|YP_001011459.1| Holliday junction resolvase [Prochlorococcus marinus str. MIT 9515]
gi|166233283|sp|A2BX41|RUVC_PROM5 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|123200744|gb|ABM72352.1| Crossover junction endodeoxyribonuclease RuvC [Prochlorococcus
marinus str. MIT 9515]
Length = 157
Score = 160 bits (405), Expect = 7e-38, Method: Composition-based stats.
Identities = 55/156 (35%), Positives = 86/156 (55%), Gaps = 2/156 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RIIGIDPGL R G+GI+++ + F+ G I + + RL +++ L +I W+
Sbjct: 1 MRIIGIDPGLGRVGYGIIEIQNEKKKFLDCGVIETDKNKKEEDRLYEIFNDLNTLINQWK 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ AAVE+ F K T+ + QAR + ++ A I VSEYAP+ +K + G G KK
Sbjct: 61 PDIAAVEKFFFYKS-STTISVVQARGVIMMVLASKNIQVSEYAPSQVKLTIAGSGKASKK 119
Query: 125 QIHMMLKMLMPES-FFKGKDAADALAIAVCHAYHAN 159
++ + + + K D+ADALAIA+ A
Sbjct: 120 EVIEAVMFNLNLNYAPKPDDSADALAIALTKLNEAG 155
>gi|210135070|ref|YP_002301509.1| Holliday junction resolvase [Helicobacter pylori P12]
gi|226698756|sp|B6JMA1|RUVC_HELP2 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|210133038|gb|ACJ08029.1| holliday junction endodeoxyribonuclease [Helicobacter pylori P12]
Length = 157
Score = 160 bits (404), Expect = 7e-38, Method: Composition-based stats.
Identities = 49/154 (31%), Positives = 78/154 (50%), Gaps = 2/154 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPG R+ G+ I+ + L +++G I L ++ L E L ++ +
Sbjct: 1 MRILGIDPGSRKCGYAIISHTSNKLSLITAGFIN-ITTTRLQEQILDLIEALDCLLDRYE 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
E A+E +F + + +KL Q R L SEY P +KKA+ G G K+
Sbjct: 60 VHEVAIEDIFFAYNPKSVIKLAQFRGALSLKILERIGNFSEYTPLQVKKALTGNGKAAKE 119
Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYH 157
Q+ M+K L+ S K D +DA+A+A+ HA
Sbjct: 120 QVAFMVKRLLNITSEIKPLDISDAIAVAITHAQR 153
>gi|149927723|ref|ZP_01915975.1| Crossover junction endodeoxyribonuclease RuvC [Limnobacter sp.
MED105]
gi|149823549|gb|EDM82779.1| Crossover junction endodeoxyribonuclease RuvC [Limnobacter sp.
MED105]
Length = 182
Score = 160 bits (404), Expect = 8e-38, Method: Composition-based stats.
Identities = 54/136 (39%), Positives = 84/136 (61%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPGLR TG+G+VD+ +V+SG I S SL RL L+ GL ++ + ++
Sbjct: 1 MRILGIDPGLRITGYGVVDIIESQQIYVASGVIRSNSDASLPDRLHTLFTGLCELAELYK 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ A VE+VFVN + +TL LGQAR + + + + V+EY IK+A++G G +K+
Sbjct: 61 PQVAVVEKVFVNVNPQSTLLLGQARGAVLTALTHSGLAVTEYTALQIKQAIVGHGKANKE 120
Query: 125 QIHMMLKMLMPESFFK 140
Q+ M+K L+
Sbjct: 121 QVQEMVKRLLKLPAHP 136
>gi|118474695|ref|YP_892929.1| Holliday junction resolvase [Campylobacter fetus subsp. fetus
82-40]
gi|166231593|sp|A0RRU6|RUVC_CAMFF RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|118413921|gb|ABK82341.1| crossover junction endodeoxyribonuclease RuvC [Campylobacter fetus
subsp. fetus 82-40]
Length = 157
Score = 160 bits (404), Expect = 8e-38, Method: Composition-based stats.
Identities = 50/154 (32%), Positives = 81/154 (52%), Gaps = 2/154 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
++I+GIDPG R G+ +++ G+ + +G I + SL +++ QL EGL + K+ +
Sbjct: 1 MKILGIDPGTRNCGYAVIEKTGNKKTLIEAGLIK-IKQDSLQYQITQLCEGLDIIFKSHK 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
+ A+E +F + LKL Q R L SEY P IKKAV G K+
Sbjct: 60 IDAVAIEDIFYAHNPKTVLKLAQFRGALSLKILQIHGEFSEYTPLQIKKAVTGKAKAAKE 119
Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYH 157
Q+ M+K ++ K D DA+AIA+ H+++
Sbjct: 120 QVAFMVKKMLGINQEIKPLDVTDAIAIALTHSFN 153
>gi|319902833|ref|YP_004162561.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides
helcogenes P 36-108]
gi|319417864|gb|ADV44975.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides
helcogenes P 36-108]
Length = 189
Score = 160 bits (404), Expect = 8e-38, Method: Composition-based stats.
Identities = 51/157 (32%), Positives = 82/157 (52%), Gaps = 3/157 (1%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG G+GI+ + G ++ G I + +L ++E + +I+++ P
Sbjct: 9 IILGIDPGTTIMGYGILRIVGTKPEMIAMGIIDLRKFGNHYLKLRHIHERVLSIIESYLP 68
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+E A+E F K+ + LKLG+A+ +A+ IP++EYAP IK A+ G G K+Q
Sbjct: 69 DELAIEAPFFGKNVQSMLKLGRAQGVAMAVALSRDIPITEYAPLKIKMAITGNGQASKEQ 128
Query: 126 IHMMLKMLM---PESFFKGKDAADALAIAVCHAYHAN 159
+ ML+ ++ E DA D LA A CH
Sbjct: 129 VADMLQRMLRFPKEDMPTFMDATDGLAAAYCHYLQMG 165
>gi|260753287|ref|YP_003226180.1| Holliday junction resolvase [Zymomonas mobilis subsp. mobilis NCIMB
11163]
gi|258552650|gb|ACV75596.1| crossover junction endodeoxyribonuclease RuvC [Zymomonas mobilis
subsp. mobilis NCIMB 11163]
Length = 169
Score = 160 bits (404), Expect = 8e-38, Method: Composition-based stats.
Identities = 75/159 (47%), Positives = 102/159 (64%)
Query: 4 SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+ +G+DPGL TGWG + V G+ L +++G I + +LA RL L++ L VI +
Sbjct: 2 PMIFLGLDPGLGTTGWGAITVEGNRLSHIANGQIRTDPSMALARRLALLHDALAAVIASH 61
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
+PE AAVE+V N +A +TLKLGQAR IA+ S A A + V EY PN +KKAV+G G DK
Sbjct: 62 QPEMAAVEEVLGNSNAQSTLKLGQARGIALFSLAEAGLSVGEYHPNVVKKAVVGTGSADK 121
Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGY 162
KQ+ M+ L+P G DAADALA+A+ HA+H S
Sbjct: 122 KQVQAMVSRLLPGVKLAGPDAADALAVAITHAHHHASAR 160
>gi|126696498|ref|YP_001091384.1| Holliday junction resolvase [Prochlorococcus marinus str. MIT 9301]
gi|166233280|sp|A3PDF8|RUVC_PROM0 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|126543541|gb|ABO17783.1| Crossover junction endodeoxyribonuclease RuvC [Prochlorococcus
marinus str. MIT 9301]
Length = 157
Score = 160 bits (404), Expect = 9e-38, Method: Composition-based stats.
Identities = 53/150 (35%), Positives = 83/150 (55%), Gaps = 2/150 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RIIGIDPGL R G+GI+++ + + G I + + RL ++++ L ++I +W
Sbjct: 1 MRIIGIDPGLARVGYGIIEIENERKILLDCGVIETGKDKKEEDRLYEIFQDLNELINHWN 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P AAVE+ F + T+ + QAR + ++ A +I VSEY+P IK + G G KK
Sbjct: 61 PTSAAVEKFFFYRS-STTISVVQARGVIMMVLASKKINVSEYSPAQIKLTIAGSGKASKK 119
Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVC 153
I + + K D+ADALAIA+
Sbjct: 120 DILDAVMYNLDLNKPPKPDDSADALAIALT 149
>gi|166712991|ref|ZP_02244198.1| Holliday junction resolvase [Xanthomonas oryzae pv. oryzicola
BLS256]
Length = 174
Score = 160 bits (404), Expect = 9e-38, Method: Composition-based stats.
Identities = 62/158 (39%), Positives = 94/158 (59%), Gaps = 1/158 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
RI+GIDPG +RTG GI+D+ G V ++ + RL +L GL ++I+ +R
Sbjct: 3 RILGIDPGSQRTGIGIIDIDEGGRSRHVHHAPLILLGEGDFSQRLKRLLHGLGELIETYR 62
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+E A+E+VF+ K A + LKLGQAR AI + + +PV EYA +K A++G G DK
Sbjct: 63 PDEVAIEKVFMGKSAASALKLGQARGAAICAVVMRDLPVHEYAATEVKLALVGKGGADKV 122
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGY 162
Q+ M+ +++ DAADALA+A+ HA+ +
Sbjct: 123 QVQHMVGIMLNLKGKLQPDAADALAVAITHAHVRATAQ 160
>gi|294626864|ref|ZP_06705456.1| Holliday junction resolvase [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|294665403|ref|ZP_06730691.1| Holliday junction resolvase [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
gi|292598878|gb|EFF43023.1| Holliday junction resolvase [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|292604814|gb|EFF48177.1| Holliday junction resolvase [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
Length = 174
Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats.
Identities = 62/158 (39%), Positives = 95/158 (60%), Gaps = 1/158 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
RI+GIDPG +RTG GI+D+ G V ++ + RL +L +GL ++I+ +R
Sbjct: 3 RILGIDPGSQRTGIGIIDIDEGGRTRHVHHAPLMLLGEGDFSQRLKRLLQGLGELIEIYR 62
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+E A+E+VF+ K A + LKLG AR AI + + +PV EYA IK A++G G DK
Sbjct: 63 PDEVAIEKVFMGKSAASALKLGHARGAAICAVVMRDLPVHEYAAKEIKLALVGKGGADKV 122
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGY 162
Q+ M+ +++ + DAADALA+A+ HA+ +
Sbjct: 123 QVQHMVGIMLNLNGKLQPDAADALAVAITHAHVRATAQ 160
>gi|188577436|ref|YP_001914365.1| Holliday junction resolvase [Xanthomonas oryzae pv. oryzae PXO99A]
gi|238689553|sp|B2STK3|RUVC_XANOP RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|188521888|gb|ACD59833.1| crossover junction endodeoxyribonuclease RuvC [Xanthomonas oryzae
pv. oryzae PXO99A]
Length = 174
Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats.
Identities = 61/158 (38%), Positives = 93/158 (58%), Gaps = 1/158 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
RI+GIDPG +RTG GI+D+ G V ++ + RL +L GL ++I+ +R
Sbjct: 3 RILGIDPGSQRTGIGIIDIDEGGRSRHVHHAPLILLGEGDFSQRLKRLLHGLGELIETYR 62
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+E A+E+VF+ K A + LKLG AR AI + + +PV EYA +K A++G G DK
Sbjct: 63 PDEVAIEKVFMGKSAASALKLGHARGAAICAVVMRDLPVHEYAATEVKLALVGKGGADKV 122
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGY 162
Q+ M+ +++ DAADALA+A+ HA+ +
Sbjct: 123 QVQHMVGIMLNLKGKLQPDAADALAVAITHAHVRATAQ 160
>gi|58581283|ref|YP_200299.1| Holliday junction resolvase [Xanthomonas oryzae pv. oryzae
KACC10331]
gi|84623201|ref|YP_450573.1| Holliday junction resolvase [Xanthomonas oryzae pv. oryzae MAFF
311018]
gi|75435936|sp|Q5H2A7|RUVC_XANOR RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|123739146|sp|Q2P578|RUVC_XANOM RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|58425877|gb|AAW74914.1| holliday junction resolvase; endodeoxyribonuclease [Xanthomonas
oryzae pv. oryzae KACC10331]
gi|84367141|dbj|BAE68299.1| holliday junction resolvase [Xanthomonas oryzae pv. oryzae MAFF
311018]
Length = 174
Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats.
Identities = 62/158 (39%), Positives = 94/158 (59%), Gaps = 1/158 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
RI+GIDPG +RTG GI+D+ G V ++ + RL +L GL ++I+ +R
Sbjct: 3 RILGIDPGSQRTGIGIIDIDEGGRSRHVHHAPLILLGEGDFSQRLKRLLHGLGELIETYR 62
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+E A+E+VF+ K A + LKLGQAR AI + + +PV EYA +K A++G G DK
Sbjct: 63 PDEVAIEKVFMGKSAASALKLGQARGAAICAVVMRDLPVHEYAATEVKLALVGKGGADKL 122
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGY 162
Q+ M+ +++ DAADALA+A+ HA+ +
Sbjct: 123 QVQHMVGIMLNLKGKLQPDAADALAVAITHAHVRATAQ 160
>gi|260220027|emb|CBA27153.1| Crossover junction endodeoxyribonuclease ruvC [Curvibacter putative
symbiont of Hydra magnipapillata]
Length = 182
Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats.
Identities = 70/158 (44%), Positives = 101/158 (63%), Gaps = 2/158 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQS--LAFRLCQLYEGLTDVIKN 62
+RI+GIDPGLR TG+G+VDV G ++ +V+SGTI + + L RL L++G+ +V++
Sbjct: 1 MRILGIDPGLRTTGFGVVDVVGADVRYVASGTIRTEHLDTRALPARLKILFDGIGEVVER 60
Query: 63 WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
+RP A+VE VFVN + +TL LGQAR + + A +PV+EY +K+AV G G
Sbjct: 61 YRPTCASVEIVFVNVNPQSTLLLGQARGALVTALVCANLPVAEYTALQMKQAVAGHGRAH 120
Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
K QI M+K L+ G DAADAL +A+ HA+ S
Sbjct: 121 KDQIQEMVKRLLHLPGLPGPDAADALGLAITHAHAGKS 158
>gi|58698539|ref|ZP_00373441.1| crossover junction endodeoxyribonuclease RuvC [Wolbachia
endosymbiont of Drosophila ananassae]
gi|58534955|gb|EAL59052.1| crossover junction endodeoxyribonuclease RuvC [Wolbachia
endosymbiont of Drosophila ananassae]
Length = 162
Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats.
Identities = 66/160 (41%), Positives = 101/160 (63%), Gaps = 1/160 (0%)
Query: 4 SIRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
++IIG+DPG+ +TGW I+ V +N+ F+ GTI + + RL ++E L VI
Sbjct: 1 MVKIIGLDPGISKTGWAIISVNEKNNIEFLGGGTISTDGKLGTGERLHIIFEQLKKVISL 60
Query: 63 WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
+ P EAAVE++FVNK+ ++L LG AR + IL+ + ++ ++EY N +KK++ G GH D
Sbjct: 61 YSPNEAAVEKIFVNKNPKSSLTLGYARGVVILALKITKLTMNEYDANYVKKSITGNGHAD 120
Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGY 162
K QI M+K ++ K AADALA+A+CHAY S +
Sbjct: 121 KDQIIFMVKQIVKNLNIKCHHAADALAVAICHAYTKGSCF 160
>gi|208434786|ref|YP_002266452.1| Holliday junction endodeoxyribonuclease [Helicobacter pylori G27]
gi|308184661|ref|YP_003928794.1| Holliday junction resolvase [Helicobacter pylori SJM180]
gi|226698757|sp|B5Z7N7|RUVC_HELPG RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|208432715|gb|ACI27586.1| Holliday junction endodeoxyribonuclease [Helicobacter pylori G27]
gi|308060581|gb|ADO02477.1| Holliday junction resolvase [Helicobacter pylori SJM180]
gi|317012682|gb|ADU83290.1| Holliday junction resolvase [Helicobacter pylori Lithuania75]
Length = 157
Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats.
Identities = 50/154 (32%), Positives = 79/154 (51%), Gaps = 2/154 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPG R+ G+ I+ A + L +++G I L ++ L E L ++ +
Sbjct: 1 MRILGIDPGSRKCGYAIISHASNKLSLITAGFIN-ITTTRLQEQILDLIEALDCLLDRYE 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
E A+E +F + + +KL Q R L SEY P +KKA+ G G K+
Sbjct: 60 VNEVAIEDIFFAYNPKSVIKLAQFRGALSLKILERIGNFSEYTPLQVKKALTGNGKAAKE 119
Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYH 157
Q+ M+K L+ S K D +DA+A+A+ HA
Sbjct: 120 QVAFMVKRLLNITSEIKPLDISDAIAVAITHAQR 153
>gi|21243876|ref|NP_643458.1| Holliday junction resolvase [Xanthomonas axonopodis pv. citri str.
306]
gi|24638205|sp|Q8PHU9|RUVC_XANAC RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|21109478|gb|AAM37994.1| holliday junction resolvase [Xanthomonas axonopodis pv. citri str.
306]
Length = 174
Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats.
Identities = 62/158 (39%), Positives = 95/158 (60%), Gaps = 1/158 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
RI+GIDPG +RTG GI+D+ G V ++ + RL +L +GL ++I+ +R
Sbjct: 3 RILGIDPGSQRTGIGIIDIDEGGRSRHVHHAPLMLLGEGDFSQRLKRLLQGLGELIEIYR 62
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+E A+E+VF+ K A + LKLG AR AI + + +PV EYA IK A++G G DK
Sbjct: 63 PDEVAIEKVFMGKSAASALKLGHARGAAICAVVMRDLPVHEYAAKEIKLALVGKGGADKV 122
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGY 162
Q+ M+ +++ + DAADALA+A+ HA+ +
Sbjct: 123 QVQHMVGIMLNLNGKLQPDAADALAVAITHAHVRATAQ 160
>gi|237750107|ref|ZP_04580587.1| holliday junction resolvase [Helicobacter bilis ATCC 43879]
gi|229374294|gb|EEO24685.1| holliday junction resolvase [Helicobacter bilis ATCC 43879]
Length = 158
Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats.
Identities = 50/152 (32%), Positives = 82/152 (53%), Gaps = 2/152 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ I+GIDPG R G+G++ V + +G I R+ L ++ + EG+ ++KN+
Sbjct: 1 MIILGIDPGSRNCGYGVISVESGKASLLDAGIIKIETRE-LQSQIVEFIEGIDLILKNYE 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
+E A+E +F + + +KL Q R L +EY P +KK++ G G DKK
Sbjct: 60 IDEVAMEDIFYAYNPKSVIKLAQFRGAISLKILQDLGNFAEYTPLQVKKSLTGNGKADKK 119
Query: 125 QIHMMLKMLMPES-FFKGKDAADALAIAVCHA 155
Q+ M+K+L+ K D +DALA+A+ HA
Sbjct: 120 QVAYMVKVLLRLQCDIKPLDISDALAVALTHA 151
>gi|221134421|ref|ZP_03560726.1| crossover junction endodeoxyribonuclease RuvC [Glaciecola sp.
HTCC2999]
Length = 172
Score = 159 bits (402), Expect = 1e-37, Method: Composition-based stats.
Identities = 67/164 (40%), Positives = 105/164 (64%), Gaps = 2/164 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ I+GIDPG R TG+G+++ G+ L +++SG I LA RL Q+++G++++I ++
Sbjct: 1 MIILGIDPGSRITGYGVIEQKGNKLTYIASGCIRL-TGDELAGRLQQVFQGVSEIISQYQ 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+E A+EQVF+ K+ + LKLGQAR AI++ +PVSEYA IK++V+G G DK
Sbjct: 60 PKEFAIEQVFMAKNPDSALKLGQARGAAIVAATQFDLPVSEYAARQIKQSVVGKGSADKT 119
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
Q+ M+ L+ DAADALA+A+CH + S +A +
Sbjct: 120 QVQHMVSYLLKLPGTPQADAADALAVALCHGHTRQS-LVAMAGK 162
>gi|56551050|ref|YP_161889.1| Holliday junction resolvase [Zymomonas mobilis subsp. mobilis ZM4]
gi|81598352|sp|Q5NR76|RUVC_ZYMMO RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|56542624|gb|AAV88778.1| crossover junction endodeoxyribonuclease RuvC [Zymomonas mobilis
subsp. mobilis ZM4]
Length = 167
Score = 159 bits (402), Expect = 1e-37, Method: Composition-based stats.
Identities = 75/158 (47%), Positives = 102/158 (64%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ +G+DPGL TGWG + V G+ L +++G I + +LA RL L++ L VI + +
Sbjct: 1 MIFLGLDPGLGTTGWGAITVEGNRLSHIANGQIRTDPSMALARRLALLHDALAAVIASHQ 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
PE AAVE+V N +A +TLKLGQAR IA+ S A A + V EY PN +KKAV+G G DKK
Sbjct: 61 PEMAAVEEVLGNSNAQSTLKLGQARGIALFSLAEAGLSVGEYHPNVVKKAVVGTGSADKK 120
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGY 162
Q+ M+ L+P G DAADALA+A+ HA+H S
Sbjct: 121 QVQAMVSRLLPGVKLAGPDAADALAVAITHAHHHASAR 158
>gi|325929366|ref|ZP_08190496.1| Holliday junction endonuclease RuvC [Xanthomonas perforans 91-118]
gi|325540278|gb|EGD11890.1| Holliday junction endonuclease RuvC [Xanthomonas perforans 91-118]
Length = 174
Score = 159 bits (402), Expect = 1e-37, Method: Composition-based stats.
Identities = 61/158 (38%), Positives = 94/158 (59%), Gaps = 1/158 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
RI+GIDPG +RTG GI+D+ G V ++ + RL +L +GL ++I+ +R
Sbjct: 3 RILGIDPGSQRTGIGIIDIDEGGRSRHVHHAPLMLLGEGDFSQRLKRLLQGLGELIEAYR 62
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+E A+E+VF+ K A + LKLG AR AI + + +PV EYA +K A++G G DK
Sbjct: 63 PDEVAIERVFMGKSAASALKLGHARGAAICAVVMRDLPVHEYAATEVKLALVGKGGADKV 122
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGY 162
Q+ M+ +++ DAADALA+A+ HA+ +
Sbjct: 123 QVQHMVGIMLNLKGKLQPDAADALAVAITHAHVRATAQ 160
>gi|157413524|ref|YP_001484390.1| Holliday junction resolvase [Prochlorococcus marinus str. MIT 9215]
gi|167012681|sp|A8G5C3|RUVC_PROM2 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|157388099|gb|ABV50804.1| Crossover junction endodeoxyribonuclease RuvC [Prochlorococcus
marinus str. MIT 9215]
Length = 157
Score = 159 bits (402), Expect = 1e-37, Method: Composition-based stats.
Identities = 53/150 (35%), Positives = 85/150 (56%), Gaps = 2/150 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RIIGIDPGL R G+GI+++ + + G I + + RL ++++ L ++I +W
Sbjct: 1 MRIIGIDPGLARVGYGIIEIENEKKILLDCGVIETGKDKKEEDRLYEIFKDLNELINHWN 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P AAVE+ F + T+ + QAR + ++ A +I VSEY+P IK + G G KK
Sbjct: 61 PTSAAVEKFFFYRS-STTISVVQARGVIMMVLASKKIQVSEYSPAQIKLTIAGSGKASKK 119
Query: 125 QIHMMLK-MLMPESFFKGKDAADALAIAVC 153
++ + L + K D+ADALAIA+
Sbjct: 120 EVLDAVMFSLELKKPPKPDDSADALAIALT 149
>gi|308234388|ref|ZP_07665125.1| crossover junction endodeoxyribonuclease RuvC [Atopobium vaginae
DSM 15829]
gi|328944204|ref|ZP_08241668.1| crossover junction endoribonuclease subunit C [Atopobium vaginae
DSM 15829]
gi|327491123|gb|EGF22898.1| crossover junction endoribonuclease subunit C [Atopobium vaginae
DSM 15829]
Length = 216
Score = 159 bits (402), Expect = 1e-37, Method: Composition-based stats.
Identities = 56/168 (33%), Positives = 94/168 (55%), Gaps = 3/168 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ I+GIDPGL TGWGIV+ G + +V+ QSL RL +Y+G++ I+ ++
Sbjct: 1 MVILGIDPGLAHTGWGIVETRGSVYRARAYDCVVTTSAQSLPERLDAIYQGISYAIERYQ 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P A+E++F ++ + + +R A+++ A A + + EY P IK+AV+G G DK+
Sbjct: 61 PVHVAIEKIFFGENVRSAIDTAHSRGAALVACARAGVVLGEYTPMQIKQAVVGTGSADKR 120
Query: 125 QIHMMLKMLMPES-FFKGKDAADALAIAVCHA--YHANSGYYKIASQD 169
Q+ M++ ++ + ADALA A+CHA Y+ AS +
Sbjct: 121 QVIFMVRNILNLDHDPRPDHCADALAAAICHASLLRTQQAAYQSASVE 168
>gi|27376646|ref|NP_768175.1| Holliday junction resolvase [Bradyrhizobium japonicum USDA 110]
gi|44888481|sp|Q89U82|RUVC_BRAJA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|27349787|dbj|BAC46800.1| ruvC [Bradyrhizobium japonicum USDA 110]
Length = 175
Score = 159 bits (402), Expect = 1e-37, Method: Composition-based stats.
Identities = 89/165 (53%), Positives = 121/165 (73%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
+R +RIIGIDPGLRRTGWG+++ G+ L +V+ G++ L+ RL ++EGL V+
Sbjct: 6 IRGPVRIIGIDPGLRRTGWGVIEAEGNRLIYVACGSVEPPDDLPLSSRLLAIHEGLASVL 65
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
+ +P EAAVEQ FVNKD VATLKLGQAR +A+L+PA+ I V+EYAPN +KK V+G GH
Sbjct: 66 SDHKPMEAAVEQTFVNKDGVATLKLGQARGVAMLAPAMFGISVAEYAPNQVKKTVVGAGH 125
Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
DK+QI MMLK+L+P++ DAADALAIA+ HA+H S ++
Sbjct: 126 ADKQQIAMMLKILLPKAEPPSADAADALAIAITHAHHRQSTALRL 170
>gi|117920400|ref|YP_869592.1| Holliday junction resolvase [Shewanella sp. ANA-3]
gi|166233301|sp|A0KWL7|RUVC_SHESA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|117612732|gb|ABK48186.1| crossover junction endodeoxyribonuclease RuvC [Shewanella sp.
ANA-3]
Length = 173
Score = 159 bits (402), Expect = 1e-37, Method: Composition-based stats.
Identities = 64/163 (39%), Positives = 105/163 (64%), Gaps = 2/163 (1%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+G+DPG R TG+G++ G ++ SG I + + L RL Q+++G++++I+ ++P
Sbjct: 3 IILGVDPGSRITGYGVIQCLGRQQLYLGSGCIRTS-GEDLPLRLKQIFDGISEIIRQYQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+E A+E+VF+ K+A + LKLGQAR AI++ +A +PV+EY+ IK AV+G G K+Q
Sbjct: 62 DEFAIERVFLAKNADSALKLGQARGAAIVAATVANLPVAEYSATQIKNAVVGTGRAKKEQ 121
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
+ M++ L+ DAADAL +AVCH YH N ++ +
Sbjct: 122 VQHMIQQLLKLPAAPQADAADALGVAVCH-YHTNQSLVALSGR 163
>gi|258645439|ref|ZP_05732908.1| crossover junction endodeoxyribonuclease RuvC [Dialister invisus
DSM 15470]
gi|260402790|gb|EEW96337.1| crossover junction endodeoxyribonuclease RuvC [Dialister invisus
DSM 15470]
Length = 165
Score = 159 bits (402), Expect = 1e-37, Method: Composition-based stats.
Identities = 49/154 (31%), Positives = 85/154 (55%), Gaps = 1/154 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+R++GIDPG R G+GIV+ G+ + ++ G I + Q+ RL +YEG+ ++I+ +R
Sbjct: 1 MRVLGIDPGTGRCGFGIVEKHGNRIVPINYGVIETFKEQNSLERLNIVYEGVAELIEMYR 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P VE ++ N + +++ QAR + +L+ +P P +K+ + G G +KK
Sbjct: 61 PHFMGVESLYFNTNITTGIEVAQARGVILLAGYRQSVPAVNVTPLQVKQQLAGYGRAEKK 120
Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYH 157
Q+ M+ +M + DAADALAI + Y
Sbjct: 121 QVIEMVMRIMHINTKINPDDAADALAIGLTAIYQ 154
>gi|157375169|ref|YP_001473769.1| crossover junction endodeoxyribonuclease [Shewanella sediminis
HAW-EB3]
gi|189046082|sp|A8FUW8|RUVC_SHESH RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|157317543|gb|ABV36641.1| Crossover junction endodeoxyribonuclease [Shewanella sediminis
HAW-EB3]
Length = 173
Score = 159 bits (402), Expect = 1e-37, Method: Composition-based stats.
Identities = 60/163 (36%), Positives = 103/163 (63%), Gaps = 2/163 (1%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+G+DPG R TG+G++ G + ++ SG I + L +RL Q+++G++++I+ ++P
Sbjct: 3 IILGVDPGSRITGYGVIQCIGRHQTYLGSGCIRT-ASDDLPYRLKQIFDGVSEIIRQYQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+E A+E+VF+ K+A + LKLGQAR AI++ A +PV+EY+ IK AV+G G K Q
Sbjct: 62 DEFAIERVFMAKNADSALKLGQARGAAIVAATNADLPVAEYSATQIKSAVVGTGKAQKSQ 121
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
+ M++ ++ DAADAL +A+CH + + S + +
Sbjct: 122 VQHMVQQILKLPAAPQADAADALGVAICHFHTSQS-LIALGGR 163
>gi|297183450|gb|ADI19582.1| holliday junction resolvasome, endonuclease subunit [uncultured
Acidobacteria bacterium HF0770_27F21]
Length = 167
Score = 159 bits (402), Expect = 1e-37, Method: Composition-based stats.
Identities = 61/168 (36%), Positives = 95/168 (56%), Gaps = 1/168 (0%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M +S+RI+G+DPG R TG+ ++DV G ++ V+ G + ++ ++ RL QL L +
Sbjct: 1 MPESVRILGVDPGSRFTGYAVIDVFGADVNVVAYGVLKLPQKKPVSERLKQLDMLLRQLG 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
+ P E VE+ FV +A + L L Q R +AI++ A PV EY+ +KKAV+G G
Sbjct: 61 EEHCPGEVVVEEAFVAVNARSALVLAQVRGVAIVAAG-ASCPVFEYSARAVKKAVVGYGQ 119
Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
DK Q+ M+K L+ +DAADALA+ +CH Y ++
Sbjct: 120 ADKGQVVQMVKTLLHLPEAPPQDAADALALVLCHMYSRRFAARLEGAR 167
>gi|24373978|ref|NP_718021.1| crossover junction endodeoxyribonuclease RuvC [Shewanella
oneidensis MR-1]
gi|38372486|sp|Q8EEF1|RUVC_SHEON RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|24348429|gb|AAN55465.1|AE015684_2 crossover junction endodeoxyribonuclease RuvC [Shewanella
oneidensis MR-1]
Length = 173
Score = 159 bits (402), Expect = 1e-37, Method: Composition-based stats.
Identities = 63/163 (38%), Positives = 104/163 (63%), Gaps = 2/163 (1%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+G+DPG R TG+G++ G ++ SG I + L +L Q+++G++++I+ ++P
Sbjct: 3 IILGVDPGSRITGYGVIQCQGRQQLYLGSGCIRTS-GDDLPLKLKQIFDGISEIIRQYQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+E A+E+VF+ K+A + LKLGQAR AI++ +A +PV+EY+ IK AV+G G K+Q
Sbjct: 62 DEFAIERVFLAKNADSALKLGQARGAAIVAATVANLPVAEYSATQIKSAVVGTGRAKKEQ 121
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
+ M++ L+ DAADAL +AVCH YH N ++ +
Sbjct: 122 VQHMIQQLLKLPAAPQADAADALGVAVCH-YHTNQSLVALSGR 163
>gi|258405867|ref|YP_003198609.1| Holliday junction resolvase [Desulfohalobium retbaense DSM 5692]
gi|257798094|gb|ACV69031.1| crossover junction endodeoxyribonuclease RuvC [Desulfohalobium
retbaense DSM 5692]
Length = 170
Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats.
Identities = 58/162 (35%), Positives = 89/162 (54%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
++G+DPG R TG+G+V L + +GTI + L+ RL L + VI W P
Sbjct: 9 VLGLDPGSRCTGFGVVRERSGQLTLLETGTIRPKSSEGLSLRLGALLTQIAVVIDRWSPH 68
Query: 67 EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
EAA+E VFV ++ + LKLGQAR A+ + + VSEYAP +KK ++G G +K Q+
Sbjct: 69 EAAIEDVFVARNTASALKLGQARGAALAACGSRGLDVSEYAPTVVKKTLVGAGRAEKSQV 128
Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
M+ ++ +D++DALA+A+CH A +
Sbjct: 129 AFMVGQMLGCKPQWAEDSSDALAVALCHCNQRRLSRLTAAGR 170
>gi|254526917|ref|ZP_05138969.1| crossover junction endodeoxyribonuclease RuvC [Prochlorococcus
marinus str. MIT 9202]
gi|221538341|gb|EEE40794.1| crossover junction endodeoxyribonuclease RuvC [Prochlorococcus
marinus str. MIT 9202]
Length = 157
Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats.
Identities = 53/150 (35%), Positives = 85/150 (56%), Gaps = 2/150 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RIIGIDPGL R G+GI+++ + + G I + + RL ++++ L ++I +W
Sbjct: 1 MRIIGIDPGLARVGYGIIEIENEKKILLDCGVIETGKDKKEEDRLYEIFKDLNELINHWN 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P AAVE+ F + T+ + QAR + ++ A +I VSEY+P IK + G G KK
Sbjct: 61 PTSAAVEKFFFYRS-STTISVVQARGVIMMVLASKKIHVSEYSPAQIKLTIAGSGKASKK 119
Query: 125 QIHMMLK-MLMPESFFKGKDAADALAIAVC 153
++ + L + K D+ADALAIA+
Sbjct: 120 EVLDAVMYSLELKKPPKPDDSADALAIALT 149
>gi|123968692|ref|YP_001009550.1| Holliday junction resolvase [Prochlorococcus marinus str. AS9601]
gi|166233284|sp|A2BRN2|RUVC_PROMS RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|123198802|gb|ABM70443.1| Crossover junction endodeoxyribonuclease RuvC [Prochlorococcus
marinus str. AS9601]
Length = 157
Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats.
Identities = 54/150 (36%), Positives = 85/150 (56%), Gaps = 2/150 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RIIGIDPGL R G+GI+++ + + G I + + RL ++++ L ++I +W+
Sbjct: 1 MRIIGIDPGLARVGYGIIEIENERKILLDCGVIETGKDKKEEDRLYEIFQDLNELINHWK 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P AAVE+ F + T+ + QAR + ++ A +I VSEY+P IK + G G KK
Sbjct: 61 PTVAAVEKFFFYRS-STTISVVQARGVIMMVLASKKIHVSEYSPAKIKLTIAGSGKASKK 119
Query: 125 QIHMMLK-MLMPESFFKGKDAADALAIAVC 153
I + L + K D+ADALAIA+
Sbjct: 120 DILDAVMYNLDLDKPPKPDDSADALAIALT 149
>gi|94501013|ref|ZP_01307537.1| Holliday junction resolvase [Oceanobacter sp. RED65]
gi|94426760|gb|EAT11744.1| Holliday junction resolvase [Oceanobacter sp. RED65]
Length = 176
Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats.
Identities = 55/136 (40%), Positives = 90/136 (66%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G+++ G L ++ SG I + LA+RL Q+++ ++++I+ +P
Sbjct: 3 IILGIDPGSRLTGFGVIEAQGSRLRYIGSGCIRIDTSEDLAYRLKQIHDCVSELIETHQP 62
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
E A+EQVF+ K+A + LKLGQAR AI++ A+ +PV EYA +K+AV+G G DK+Q
Sbjct: 63 NEFAIEQVFMGKNADSALKLGQARGSAIVAAAVNNLPVHEYAARAVKQAVVGKGSADKEQ 122
Query: 126 IHMMLKMLMPESFFKG 141
+ M+++L+
Sbjct: 123 VQHMVQLLLKLPGKPQ 138
>gi|269468515|gb|EEZ80169.1| Holliday junction resolvasome, endonuclease subunit [uncultured
SUP05 cluster bacterium]
Length = 156
Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats.
Identities = 53/156 (33%), Positives = 92/156 (58%), Gaps = 5/156 (3%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
++I+G+DPG R TG+G+++ +++SG I + + L R+ ++ + ++K ++
Sbjct: 1 MKILGVDPGSRVTGFGLIEAQKLKFTYIASGCIRT--KGELTDRITTIFLEIDQIVKKYQ 58
Query: 65 PEEAAVEQVFVNK---DAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
P+ +E+ F+ + A +KLG AR I + + I + EY+PN IKKAV+G GH
Sbjct: 59 PDVVVIERAFMRPDRPNPDAAIKLGHARGAIISAAGVNGITMVEYSPNQIKKAVVGKGHA 118
Query: 122 DKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYH 157
K Q+ M++ + + +DAADALA A+CH YH
Sbjct: 119 TKDQVSYMVQESLKLNKAPQEDAADALAGAMCHGYH 154
>gi|325954429|ref|YP_004238089.1| Crossover junction endodeoxyribonuclease ruvC [Weeksella virosa DSM
16922]
gi|323437047|gb|ADX67511.1| Crossover junction endodeoxyribonuclease ruvC [Weeksella virosa DSM
16922]
Length = 182
Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats.
Identities = 52/160 (32%), Positives = 87/160 (54%), Gaps = 3/160 (1%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M K I+GIDPG G+G++ + L ++ ++ + +L +++E +I
Sbjct: 1 MEK--IILGIDPGTTVMGFGVIAIENKQLKLITLDELLLHKLPNHEMKLKRIFEKTLAII 58
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
+ P+E A+E F K+ + LKLG+A+ +A+ + IP++EY+P IK A+ G G+
Sbjct: 59 DQYHPDELAIEAPFFGKNVQSMLKLGRAQGVAMAAGLYREIPITEYSPKKIKMAITGNGN 118
Query: 121 GDKKQIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHAN 159
K+ + MLK L+ K DA D LA AVCH ++ N
Sbjct: 119 ASKEMVAGMLKNLLGLKEIPKRLDATDGLAAAVCHYFNMN 158
>gi|241761372|ref|ZP_04759460.1| crossover junction endodeoxyribonuclease RuvC [Zymomonas mobilis
subsp. mobilis ATCC 10988]
gi|241374279|gb|EER63776.1| crossover junction endodeoxyribonuclease RuvC [Zymomonas mobilis
subsp. mobilis ATCC 10988]
Length = 169
Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats.
Identities = 75/159 (47%), Positives = 102/159 (64%)
Query: 4 SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+ +G+DPGL TGWG + V G+ L +++G I + +LA RL L++ L VI +
Sbjct: 2 PMIFLGLDPGLGTTGWGAITVEGNRLSHIANGQIRTGPSMALARRLALLHDALAAVIASH 61
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
+PE AAVE+V N +A +TLKLGQAR IA+ S A A + V EY PN +KKAV+G G DK
Sbjct: 62 QPEMAAVEEVLGNSNAQSTLKLGQARGIALFSLAEAGLSVGEYHPNVVKKAVVGTGSADK 121
Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGY 162
KQ+ M+ L+P G DAADALA+A+ HA+H S
Sbjct: 122 KQVQAMVSRLLPGVKLAGPDAADALAVAITHAHHHASAR 160
>gi|225629965|ref|YP_002726756.1| crossover junction endodeoxyribonuclease RuvC [Wolbachia sp. wRi]
gi|254767489|sp|C0R5C3|RUVC_WOLWR RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|225591946|gb|ACN94965.1| crossover junction endodeoxyribonuclease RuvC [Wolbachia sp. wRi]
Length = 162
Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats.
Identities = 65/160 (40%), Positives = 101/160 (63%), Gaps = 1/160 (0%)
Query: 4 SIRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
++IIG+DPG+ +TGW I+ + +N+ F+ GTI + + RL ++E L VI
Sbjct: 1 MVKIIGLDPGISKTGWAIISLNEKNNIEFLGGGTISTDGKLGTGERLHIIFEQLKKVISL 60
Query: 63 WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
+ P EAAVE++FVNK+ ++L LG AR + IL+ + ++ ++EY N +KK++ G GH D
Sbjct: 61 YSPNEAAVEKIFVNKNPKSSLTLGYARGVVILALKITKLTMNEYDANYVKKSITGNGHAD 120
Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGY 162
K QI M+K ++ K AADALA+A+CHAY S +
Sbjct: 121 KDQIIFMVKQIVKNLNIKCHHAADALAVAICHAYTKGSCF 160
>gi|167754456|ref|ZP_02426583.1| hypothetical protein ALIPUT_02752 [Alistipes putredinis DSM 17216]
gi|167659081|gb|EDS03211.1| hypothetical protein ALIPUT_02752 [Alistipes putredinis DSM 17216]
Length = 211
Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats.
Identities = 45/163 (27%), Positives = 84/163 (51%), Gaps = 1/163 (0%)
Query: 8 IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEE 67
+GIDPG G+G+++V G + V G I +L ++E + ++ +RP E
Sbjct: 1 MGIDPGTNYMGYGVLEVCGREVRSVVLGDIDLHRMNDPYEKLRYIFERVGALVDEYRPRE 60
Query: 68 AAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIH 127
A+E F ++ + LKLG+A+ +A+ + + V EYAP IK+ + G G K+Q+
Sbjct: 61 VALESPFFGENVQSMLKLGRAQGVAMAAALSRGLQVFEYAPTRIKQCITGRGSAPKEQVA 120
Query: 128 MMLKMLMPESFFK-GKDAADALAIAVCHAYHANSGYYKIASQD 169
++ ++ DA D +A+A+CH + +++ +D
Sbjct: 121 ALVSSMLTIERPPRRLDATDGMAVALCHHFMSSNPLNGALGED 163
>gi|304440230|ref|ZP_07400120.1| crossover junction endoribonuclease subunit C [Peptoniphilus
duerdenii ATCC BAA-1640]
gi|304371279|gb|EFM24895.1| crossover junction endoribonuclease subunit C [Peptoniphilus
duerdenii ATCC BAA-1640]
Length = 164
Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats.
Identities = 42/136 (30%), Positives = 79/136 (58%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ I+GIDPGL G+G+++V G+ +++ G I + RL ++Y+ +TD++ ++
Sbjct: 1 MIILGIDPGLALVGYGVIEVIGNKYKYLTHGVIKTEAGVPFQNRLKKIYKEMTDIVIKYK 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
PE+ A E++F NK+ + + QAR + +L + V EY P +K+A++G G +K+
Sbjct: 61 PEDIAFEELFFNKNIKTAISVAQARGVEVLVASTFTDNVYEYTPLQVKQAIVGYGRAEKR 120
Query: 125 QIHMMLKMLMPESFFK 140
Q+ M KM++
Sbjct: 121 QVQEMTKMILNLKEIP 136
>gi|212704985|ref|ZP_03313113.1| hypothetical protein DESPIG_03053 [Desulfovibrio piger ATCC 29098]
gi|212671649|gb|EEB32132.1| hypothetical protein DESPIG_03053 [Desulfovibrio piger ATCC 29098]
Length = 170
Score = 158 bits (400), Expect = 2e-37, Method: Composition-based stats.
Identities = 63/159 (39%), Positives = 95/159 (59%), Gaps = 3/159 (1%)
Query: 4 SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVS--CVRQSLAFRLCQLYEGLTDVIK 61
+ ++G+DPG +RTGWGI+ L V G I + + + RL +Y L DV+
Sbjct: 5 PLVVLGVDPGSQRTGWGIIAEQSGVLRLVDCGIIRTTSSGEKEFSQRLAVIYRQLADVVG 64
Query: 62 NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
+RP+EAA+EQVF K+A + LKLGQAR +A+ + A R+PVS+Y P +KK+V+G G
Sbjct: 65 RYRPQEAAIEQVFTAKNAASALKLGQARGVAVAACAAHRVPVSDYEPTLVKKSVVGTGRA 124
Query: 122 DKKQIHMMLKMLMPES-FFKGKDAADALAIAVCHAYHAN 159
+K+Q+ M++ L+ D DALA+A+CH
Sbjct: 125 EKEQVAFMVRRLLNVRGEGWALDTTDALAVAICHLTMRR 163
>gi|268678644|ref|YP_003303075.1| crossover junction endodeoxyribonuclease RuvC [Sulfurospirillum
deleyianum DSM 6946]
gi|268616675|gb|ACZ11040.1| crossover junction endodeoxyribonuclease RuvC [Sulfurospirillum
deleyianum DSM 6946]
Length = 157
Score = 158 bits (400), Expect = 2e-37, Method: Composition-based stats.
Identities = 52/154 (33%), Positives = 78/154 (50%), Gaps = 2/154 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ I+GIDPG R G+ I+ + L V +G I + L ++ +L EGL + K+
Sbjct: 1 MTILGIDPGTRNCGYSILRKEKNRLVLVEAGLIK-IKEKILQHQIMELVEGLDVLFKHHE 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
+E A+E +F + LKL Q R L + SEY P +KKAV G G K+
Sbjct: 60 IDEVAIEDIFYAYNPQTVLKLAQFRGALSLKILQVKGNFSEYTPLQVKKAVTGNGKAAKE 119
Query: 125 QIHMMLKMLMP-ESFFKGKDAADALAIAVCHAYH 157
Q+ M+K ++ + K D DA+AIA+ HA
Sbjct: 120 QVAFMVKKILGIKQEIKPLDITDAIAIAITHAQR 153
>gi|291515509|emb|CBK64719.1| crossover junction endodeoxyribonuclease RuvC [Alistipes shahii WAL
8301]
Length = 207
Score = 158 bits (400), Expect = 2e-37, Method: Composition-based stats.
Identities = 48/165 (29%), Positives = 86/165 (52%), Gaps = 1/165 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
RI+GIDPG G+G++++ G + V G I +L ++E + ++ + P
Sbjct: 10 RIMGIDPGTNYMGYGVLEIEGRTVRSVVLGDIDLHKLPDPYAKLRYIFERVGALVDEYAP 69
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
E A+E F ++ + LKLG+A+ +A+ + I V EYAP IK+++ G G K+Q
Sbjct: 70 REVALESPFFGENVQSMLKLGRAQGVAMAAALSRGIDVFEYAPMRIKQSITGRGSAAKEQ 129
Query: 126 IHMML-KMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQD 169
+ ++ + L + K DA D +A+A+CH + + S +
Sbjct: 130 VASIVCRTLAIDRPPKRLDATDGMAVALCHYFTSASPLNAALGDE 174
>gi|78779448|ref|YP_397560.1| Holliday junction endonuclease RuvC [Prochlorococcus marinus str.
MIT 9312]
gi|123554117|sp|Q31AH1|RUVC_PROM9 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|78712947|gb|ABB50124.1| Holliday junction endonuclease RuvC [Prochlorococcus marinus str.
MIT 9312]
Length = 157
Score = 158 bits (400), Expect = 2e-37, Method: Composition-based stats.
Identities = 53/150 (35%), Positives = 85/150 (56%), Gaps = 2/150 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RIIGIDPGL R G+GI+++ D + G I + + RL ++++ L ++I +W+
Sbjct: 1 MRIIGIDPGLARVGYGIIEIKNDKKILLDCGVIETGKEKKEEDRLYEIFKDLNELISHWK 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P AAVE+ F + T+ + QAR + ++ A +I +SEY+P IK + G G KK
Sbjct: 61 PNLAAVEKFFFYRS-STTISVVQARGVIMMVLASKKINISEYSPAQIKLTIAGSGKASKK 119
Query: 125 QIHMMLK-MLMPESFFKGKDAADALAIAVC 153
++ + L K D+ADALAIA+
Sbjct: 120 EVLDAVMYNLELNKPPKPDDSADALAIALT 149
>gi|167644750|ref|YP_001682413.1| Holliday junction resolvase [Caulobacter sp. K31]
gi|189046060|sp|B0SUN7|RUVC_CAUSK RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|167347180|gb|ABZ69915.1| crossover junction endodeoxyribonuclease RuvC [Caulobacter sp. K31]
Length = 169
Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats.
Identities = 77/153 (50%), Positives = 103/153 (67%)
Query: 4 SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
IRI+G+DPGLRRTGWG+V V G + V+ G IV + A RL L+EG+ VI
Sbjct: 8 PIRILGLDPGLRRTGWGVVSVEGSRMSHVAHGVIVPDEKGEFASRLLCLFEGICAVIDAH 67
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
RP+EAAVE+VF+N +A +TLKLG ARA A+++PA A + V+EY+ +KKAV+G G DK
Sbjct: 68 RPDEAAVEEVFLNTNAQSTLKLGHARAAALIAPARAGLLVAEYSTRLVKKAVVGTGAADK 127
Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
QI M+ L+P + D ADALA+A+ HA
Sbjct: 128 AQIGFMIARLLPTAGKTTADCADALAVAITHAN 160
>gi|315931306|gb|EFV10275.1| crossover junction endodeoxyribonuclease RuvC [Campylobacter jejuni
subsp. jejuni 327]
Length = 158
Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats.
Identities = 50/152 (32%), Positives = 76/152 (50%), Gaps = 2/152 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
++I+GIDPG R G+ I++ + +G I L +++ +L EGL + KN
Sbjct: 1 MKILGIDPGSRNCGYAIIEADKGKNILIEAGLIKIKPST-LQYQITELCEGLDLIFKNHS 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
+E A+E +F + LKL Q R L +EY P +KKAV G K+
Sbjct: 60 FDEVAIEDIFFAYNPKTVLKLAQFRGALSLKILQIHGDFAEYTPLQVKKAVTGKAKATKE 119
Query: 125 QIHMMLKMLMPESF-FKGKDAADALAIAVCHA 155
Q+ M+K L+ S K D DA+A+A+ HA
Sbjct: 120 QVAFMVKRLLGLSKDIKPLDITDAIAVALTHA 151
>gi|268324526|emb|CBH38114.1| crossover junction endodeoxyribonuclease RuvC [uncultured archaeon]
Length = 162
Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats.
Identities = 56/157 (35%), Positives = 85/157 (54%), Gaps = 1/157 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+R+IGIDPG RTGWG+V++ L + G + + QS A RL ++Y L VIK
Sbjct: 1 MRVIGIDPGTARTGWGVVELNNGRLKPIDFGYVKTTTAQSNAERLKKIYYDLLAVIKAVT 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ A+E +F N + L +GQAR + +L+ A++ IP EY + +K + G G K
Sbjct: 61 PDVMAIEMIFFNTNVKTALSVGQARGVCLLAAAISDIPAYEYNTSEVKSIITGYGRATKS 120
Query: 125 QIHMML-KMLMPESFFKGKDAADALAIAVCHAYHANS 160
++ + + L E K D DALAIA H ++
Sbjct: 121 EVATSVMEKLKLEEMPKPDDVTDALAIAATHIIRNSN 157
>gi|78048837|ref|YP_365012.1| Holliday junction resolvase [Xanthomonas campestris pv. vesicatoria
str. 85-10]
gi|90146488|sp|Q3BQF1|RUVC_XANC5 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|78037267|emb|CAJ25012.1| holliday junction resolvase [Xanthomonas campestris pv. vesicatoria
str. 85-10]
Length = 174
Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats.
Identities = 60/158 (37%), Positives = 93/158 (58%), Gaps = 1/158 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
RI+GIDPG +RTG GI+D+ V ++ + RL +L +GL ++I+ +R
Sbjct: 3 RILGIDPGSQRTGIGIIDIDEDGRSRHVHHAPLMLLGEGDFSQRLKRLLQGLGELIETYR 62
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+E A+E+VF+ K A + LKLG AR AI + + +PV EYA +K A++G G DK
Sbjct: 63 PDEVAIERVFMGKSAASALKLGHARGAAICAVVMRDLPVHEYAATEVKLALVGKGGADKV 122
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGY 162
Q+ M+ +++ DAADALA+A+ HA+ +
Sbjct: 123 QVQHMVGIMLNLKGKLQPDAADALAVAITHAHVRATAQ 160
>gi|297566087|ref|YP_003685059.1| crossover junction endodeoxyribonuclease RuvC [Meiothermus silvanus
DSM 9946]
gi|296850536|gb|ADH63551.1| crossover junction endodeoxyribonuclease RuvC [Meiothermus silvanus
DSM 9946]
Length = 163
Score = 158 bits (399), Expect = 3e-37, Method: Composition-based stats.
Identities = 43/158 (27%), Positives = 82/158 (51%), Gaps = 1/158 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ ++GIDPG+ G G+V+ +G + + + + R+ ++++ L VI +R
Sbjct: 1 MIVLGIDPGITNMGLGVVEQSGKAHRLLHARLVKTAHSDPAPQRVGEIFQNLRIVIAEFR 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ AVE+ F + + K+G A ++ + V Y P +K+A++G GH +K+
Sbjct: 61 PQAIAVEEQFFYRQNELSYKVGWAMGAVFIAANEWGLEVYGYGPMKVKQALVGYGHAEKE 120
Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHANSG 161
Q+ M++ ++ K ADALAIA+ H ++ G
Sbjct: 121 QVAFMVRAILGLKENPKPTHVADALAIALTHLFYLGRG 158
>gi|325297411|ref|YP_004257328.1| Crossover junction endodeoxyribonuclease ruvC [Bacteroides
salanitronis DSM 18170]
gi|324316964|gb|ADY34855.1| Crossover junction endodeoxyribonuclease ruvC [Bacteroides
salanitronis DSM 18170]
Length = 189
Score = 158 bits (399), Expect = 3e-37, Method: Composition-based stats.
Identities = 53/157 (33%), Positives = 82/157 (52%), Gaps = 3/157 (1%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG G+G++ + G ++ G I + +L +Y+ + VI ++ P
Sbjct: 9 IILGIDPGTNIMGYGVLKITGIKPEVMTLGVIDLRKCEDPYLKLKHIYQRVQGVIASYLP 68
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+E A+E F K+ + LKLG+A+ +AI++ IPV+EYAP IK A+ G G K+Q
Sbjct: 69 DELAIEAPFYGKNVQSMLKLGRAQGVAIVAALCRDIPVTEYAPLKIKMAITGNGQASKEQ 128
Query: 126 IHMMLKMLMPESFF---KGKDAADALAIAVCHAYHAN 159
+ MLK ++ DA DAL A CH
Sbjct: 129 VASMLKRMLHIPDSEMGPFMDATDALGAAYCHYLQMG 165
>gi|157415948|ref|YP_001483204.1| Holliday junction resolvase [Campylobacter jejuni subsp. jejuni
81116]
gi|187611412|sp|A8FP40|RUVC_CAMJ8 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|157386912|gb|ABV53227.1| crossover junction endodeoxyribonuclease RuvC [Campylobacter jejuni
subsp. jejuni 81116]
Length = 158
Score = 158 bits (399), Expect = 3e-37, Method: Composition-based stats.
Identities = 50/152 (32%), Positives = 76/152 (50%), Gaps = 2/152 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
++I+GIDPG R G+ I++ + +G I L +++ +L EGL + KN
Sbjct: 1 MKILGIDPGSRNCGYAIIEANKGKNILIEAGLIKIKPNT-LQYQITELCEGLDLIFKNHS 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
+E A+E +F + LKL Q R L +EY P +KKAV G K+
Sbjct: 60 FDEVAIEDIFFAYNPKTVLKLAQFRGALSLKILQIHGDFAEYTPLQVKKAVTGKAKATKE 119
Query: 125 QIHMMLKMLMPESF-FKGKDAADALAIAVCHA 155
Q+ M+K L+ S K D DA+A+A+ HA
Sbjct: 120 QVAFMVKRLLGLSKDIKPLDITDAIAVALTHA 151
>gi|148546487|ref|YP_001266589.1| Holliday junction resolvase [Pseudomonas putida F1]
gi|166233287|sp|A5VZU5|RUVC_PSEP1 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|148510545|gb|ABQ77405.1| Holliday junction endonuclease RuvC [Pseudomonas putida F1]
gi|313497566|gb|ADR58932.1| RuvC [Pseudomonas putida BIRD-1]
Length = 174
Score = 158 bits (399), Expect = 3e-37, Method: Composition-based stats.
Identities = 60/154 (38%), Positives = 97/154 (62%), Gaps = 1/154 (0%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
I+GIDPG R TG+G+V +V+SG I + + L RL ++ G++++I P
Sbjct: 4 ILGIDPGSRITGYGVVRQTARGCEYVASGCIRTGSGE-LHERLQIVFRGVSEIIAQHGPV 62
Query: 67 EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
+E+VF+ ++A + LKLGQAR AI++ A A + ++EY+ +K+AV G G +K+Q+
Sbjct: 63 TMGIERVFMARNADSALKLGQARGAAIVAAAEAGLEIAEYSATQVKQAVAGTGGANKEQV 122
Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
MM+ L+ + DA+DALAIA+CHA+ +S
Sbjct: 123 MMMVMHLLKLTQKPQIDASDALAIALCHAHTRSS 156
>gi|26987950|ref|NP_743375.1| Holliday junction resolvase [Pseudomonas putida KT2440]
gi|37999647|sp|Q88NJ2|RUVC_PSEPK RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|24982662|gb|AAN66839.1|AE016312_10 crossover junction endodeoxyribonuclease RuvC [Pseudomonas putida
KT2440]
Length = 174
Score = 158 bits (399), Expect = 3e-37, Method: Composition-based stats.
Identities = 60/154 (38%), Positives = 97/154 (62%), Gaps = 1/154 (0%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
I+GIDPG R TG+G+V +V+SG I + + L RL ++ G++++I P
Sbjct: 4 ILGIDPGSRITGYGVVRQTARGCEYVASGCIRTGSGE-LHERLQIVFRGVSEIIAQHGPV 62
Query: 67 EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
+E+VF+ ++A + LKLGQAR AI++ A A + ++EY+ +K+AV G G +K+Q+
Sbjct: 63 TMGIERVFMARNADSALKLGQARGAAIVAAAEAGLEIAEYSATQVKQAVAGTGGANKEQV 122
Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
MM+ L+ + DA+DALAIA+CHA+ +S
Sbjct: 123 MMMVMHLLKLTQKPQIDASDALAIALCHAHTRSS 156
>gi|170723161|ref|YP_001750849.1| Holliday junction resolvase [Pseudomonas putida W619]
gi|229558762|sp|B1JD72|RUVC_PSEPW RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|169761164|gb|ACA74480.1| crossover junction endodeoxyribonuclease RuvC [Pseudomonas putida
W619]
Length = 174
Score = 158 bits (399), Expect = 3e-37, Method: Composition-based stats.
Identities = 58/154 (37%), Positives = 96/154 (62%), Gaps = 1/154 (0%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
I+GIDPG R TG+G+V +V+SG I + + L RL ++ G++++I P
Sbjct: 4 ILGIDPGSRITGYGVVRQTARGCEYVASGCIRTGSGE-LHERLQIVFRGVSEIIAQHGPV 62
Query: 67 EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
+E+VF+ ++ + LKLGQAR AI++ A A + ++EY+ +K+AV G G +K+Q+
Sbjct: 63 TMGIERVFMARNPDSALKLGQARGAAIVAAAEAGLEIAEYSATQVKQAVAGTGGANKEQV 122
Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
+M+ L+ + DA+DALAIA+CHA+ +S
Sbjct: 123 MLMVMHLLKLTQKPQIDASDALAIALCHAHTRSS 156
>gi|317011091|gb|ADU84838.1| Holliday junction resolvase [Helicobacter pylori SouthAfrica7]
Length = 157
Score = 158 bits (399), Expect = 3e-37, Method: Composition-based stats.
Identities = 49/154 (31%), Positives = 79/154 (51%), Gaps = 2/154 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPG ++ G+ I+ A + L +++G I L ++ L E L ++ +
Sbjct: 1 MRILGIDPGSKKCGYAIISYASNKLSLITAGFIN-ITTTRLQEQILDLIEALDCLLDRYE 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
E A+E +F + + +KL Q R L SEY P +KKA+ G G K+
Sbjct: 60 VHEVAIEDIFFGYNPKSVIKLAQFRGALSLKILERIGNFSEYTPLQVKKALTGNGKAAKE 119
Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYH 157
Q+ M+K L+ S K D +DA+A+A+ HA
Sbjct: 120 QVAFMVKRLLHITSEIKPLDISDAIAVAITHAQR 153
>gi|269469245|gb|EEZ80771.1| Holliday junction resolvasome, endonuclease subunit [uncultured
SUP05 cluster bacterium]
Length = 156
Score = 158 bits (399), Expect = 3e-37, Method: Composition-based stats.
Identities = 53/156 (33%), Positives = 92/156 (58%), Gaps = 5/156 (3%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
++I+G+DPG R TG+G+++ +++SG I + + L R+ ++ + ++K ++
Sbjct: 1 MKILGVDPGSRVTGFGLIEAQKLKFIYIASGCIRT--KGELTDRITTIFLEIDQIVKKYQ 58
Query: 65 PEEAAVEQVFVNK---DAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
P+ +E+ F+ + A +KLG AR I + + I + EY+PN IKKAV+G GH
Sbjct: 59 PDVVVIERAFMRPDRPNPDAAIKLGHARGAIISAAGVNGITMVEYSPNQIKKAVVGKGHA 118
Query: 122 DKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYH 157
K Q+ M++ + + +DAADALA A+CH YH
Sbjct: 119 TKDQVSYMVQESLKLNKAPQEDAADALAGAMCHGYH 154
>gi|148926819|ref|ZP_01810498.1| crossover junction endodeoxyribonuclease [Campylobacter jejuni
subsp. jejuni CG8486]
gi|145844544|gb|EDK21651.1| crossover junction endodeoxyribonuclease [Campylobacter jejuni
subsp. jejuni CG8486]
Length = 184
Score = 158 bits (399), Expect = 3e-37, Method: Composition-based stats.
Identities = 50/153 (32%), Positives = 77/153 (50%), Gaps = 2/153 (1%)
Query: 4 SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+++I+GIDPG R G+ I++ + +G I L +++ +L EGL + KN
Sbjct: 26 NLKILGIDPGSRNCGYAIIEADKGKNILIEAGLIKIKPST-LQYQITELCEGLDLIFKNH 84
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
+E A+E +F + LKL Q R L +EY P +KKAV G K
Sbjct: 85 SFDEVAIEDIFFAYNPKTVLKLAQFRGALSLKILQIHGDFAEYTPLQVKKAVTGKAKATK 144
Query: 124 KQIHMMLKMLMPESF-FKGKDAADALAIAVCHA 155
+Q+ M+K L+ S K D DA+A+A+ HA
Sbjct: 145 EQVAFMVKRLLGLSKDIKPLDITDAIAVALTHA 177
>gi|86150551|ref|ZP_01068775.1| crossover junction endodeoxyribonuclease RuvC [Campylobacter jejuni
subsp. jejuni CF93-6]
gi|86152383|ref|ZP_01070593.1| crossover junction endodeoxyribonuclease RuvC [Campylobacter jejuni
subsp. jejuni 260.94]
gi|86154008|ref|ZP_01072210.1| crossover junction endodeoxyribonuclease RuvC [Campylobacter jejuni
subsp. jejuni HB93-13]
gi|88597675|ref|ZP_01100908.1| crossover junction endodeoxyribonuclease RuvC [Campylobacter jejuni
subsp. jejuni 84-25]
gi|315125110|ref|YP_004067114.1| crossover junction endodeoxyribonuclease [Campylobacter jejuni
subsp. jejuni ICDCCJ07001]
gi|85839003|gb|EAQ56268.1| crossover junction endodeoxyribonuclease RuvC [Campylobacter jejuni
subsp. jejuni CF93-6]
gi|85840680|gb|EAQ57932.1| crossover junction endodeoxyribonuclease RuvC [Campylobacter jejuni
subsp. jejuni 260.94]
gi|85842546|gb|EAQ59759.1| crossover junction endodeoxyribonuclease RuvC [Campylobacter jejuni
subsp. jejuni HB93-13]
gi|88189979|gb|EAQ93955.1| crossover junction endodeoxyribonuclease RuvC [Campylobacter jejuni
subsp. jejuni 84-25]
gi|307748586|gb|ADN91856.1| Holliday junction resolvase [Campylobacter jejuni subsp. jejuni M1]
gi|315018832|gb|ADT66925.1| crossover junction endodeoxyribonuclease [Campylobacter jejuni
subsp. jejuni ICDCCJ07001]
gi|315930327|gb|EFV09415.1| crossover junction endodeoxyribonuclease RuvC [Campylobacter jejuni
subsp. jejuni 305]
Length = 184
Score = 158 bits (399), Expect = 3e-37, Method: Composition-based stats.
Identities = 50/153 (32%), Positives = 77/153 (50%), Gaps = 2/153 (1%)
Query: 4 SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+++I+GIDPG R G+ I++ + +G I L +++ +L EGL + KN
Sbjct: 26 NLKILGIDPGSRNCGYAIIEADKGKNILIEAGLIKIKPST-LQYQITELCEGLDLIFKNH 84
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
+E A+E +F + LKL Q R L +EY P +KKAV G K
Sbjct: 85 SFDEVAIEDIFFAYNPKTVLKLAQFRGALSLKILQIHGDFAEYTPLQVKKAVTGKAKATK 144
Query: 124 KQIHMMLKMLMPESF-FKGKDAADALAIAVCHA 155
+Q+ M+K L+ S K D DA+A+A+ HA
Sbjct: 145 EQVAFMVKRLLGLSKDIKPLDITDAIAVALTHA 177
>gi|57504596|ref|ZP_00370708.1| crossover junction endodeoxyribonuclease RuvC [Campylobacter coli
RM2228]
gi|305432572|ref|ZP_07401733.1| crossover junction endoribonuclease subunit C [Campylobacter coli
JV20]
gi|57019491|gb|EAL56185.1| crossover junction endodeoxyribonuclease RuvC [Campylobacter coli
RM2228]
gi|304444283|gb|EFM36935.1| crossover junction endoribonuclease subunit C [Campylobacter coli
JV20]
gi|315059175|gb|ADT73504.1| Crossover junction endodeoxyribonuclease RuvC [Campylobacter jejuni
subsp. jejuni S3]
Length = 158
Score = 158 bits (399), Expect = 4e-37, Method: Composition-based stats.
Identities = 50/152 (32%), Positives = 76/152 (50%), Gaps = 2/152 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
++I+GIDPG R G+ I++ + +G I L +++ +L EGL + KN
Sbjct: 1 MKILGIDPGSRNCGYAIIEANKGKNILIEAGLIKIKPST-LQYQITELCEGLDLIFKNHS 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
+E A+E +F + LKL Q R L +EY P +KKAV G K+
Sbjct: 60 FDEVAIEDIFFAYNPKTVLKLAQFRGALSLKILQIHGDFAEYTPLQVKKAVTGKAKATKE 119
Query: 125 QIHMMLKMLMPESF-FKGKDAADALAIAVCHA 155
Q+ M+K L+ S K D DA+A+A+ HA
Sbjct: 120 QVAFMVKRLLGLSKDIKPLDITDAIAVALTHA 151
>gi|255323603|ref|ZP_05364733.1| crossover junction endodeoxyribonuclease RuvC [Campylobacter showae
RM3277]
gi|255299317|gb|EET78604.1| crossover junction endodeoxyribonuclease RuvC [Campylobacter showae
RM3277]
Length = 157
Score = 157 bits (398), Expect = 4e-37, Method: Composition-based stats.
Identities = 51/156 (32%), Positives = 78/156 (50%), Gaps = 2/156 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
++I+GIDPG R G+ IV+ + +G I SL +++ +L EGL + KN +
Sbjct: 1 MKILGIDPGSRNCGYAIVEKTPVKTVLIEAGLIKIKPN-SLQYQITELCEGLDLIFKNHK 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
+E A+E +F + LKL Q R L +EY P +KK V G DK+
Sbjct: 60 FDEVAIEDIFFAYNPKTVLKLAQFRGALSLKILQLHGDFAEYTPLQVKKTVTGKAKADKE 119
Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHAN 159
Q+ M+K ++ K D DA+AIA+ HA +
Sbjct: 120 QVAFMVKKILGITKEIKPLDITDAIAIALTHANNLR 155
>gi|152994035|ref|YP_001359756.1| Holliday junction resolvase [Sulfurovum sp. NBC37-1]
gi|166233304|sp|A6QD40|RUVC_SULNB RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|151425896|dbj|BAF73399.1| crossover junction endodeoxyribonuclease RuvC [Sulfurovum sp.
NBC37-1]
Length = 159
Score = 157 bits (398), Expect = 4e-37, Method: Composition-based stats.
Identities = 49/154 (31%), Positives = 76/154 (49%), Gaps = 2/154 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ I+GIDPG R G+ I+ G V +G + + L ++ +L EG+ ++K +
Sbjct: 1 MNILGIDPGSRNLGYCILHWDGKKFSLVEAGLLK-IKTKELQEQIVELVEGIDIILKAHQ 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
+E A+E +F + + LKL Q R L EY P +KKAV G G K+
Sbjct: 60 IDEVAIEDIFFAYNPQSVLKLAQFRGALSLKILQEIGYFYEYTPLQVKKAVTGNGKATKE 119
Query: 125 QIHMMLKMLMP-ESFFKGKDAADALAIAVCHAYH 157
Q+ M+K L+ + K D DA+AIA+ H
Sbjct: 120 QVAFMVKRLLGIKKEIKPLDITDAMAIAITHLQR 153
>gi|127513005|ref|YP_001094202.1| crossover junction endodeoxyribonuclease RuvC [Shewanella loihica
PV-4]
gi|166233299|sp|A3QEP5|RUVC_SHELP RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|126638300|gb|ABO23943.1| crossover junction endodeoxyribonuclease RuvC [Shewanella loihica
PV-4]
Length = 173
Score = 157 bits (398), Expect = 4e-37, Method: Composition-based stats.
Identities = 59/155 (38%), Positives = 98/155 (63%), Gaps = 1/155 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+G+DPG R TG+G++ G ++ SG I + L RL +++G++++I+ ++P
Sbjct: 3 IILGVDPGSRITGYGVIQCQGRQQIYLGSGCIRTQS-DDLPSRLKVIFDGISEIIRQYQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+E A+E+VF+ K+A + LKLGQAR AI++ A++PV+EY+ IK AV+G G K Q
Sbjct: 62 DEFAIERVFLAKNADSALKLGQARGAAIVAATNAQLPVAEYSATQIKNAVVGTGRAQKSQ 121
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
+ M++ ++ DAADAL +A+CH + S
Sbjct: 122 VQHMVQQILKLPAAPQADAADALGVALCHFHTYQS 156
>gi|194333340|ref|YP_002015200.1| crossover junction endodeoxyribonuclease RuvC [Prosthecochloris
aestuarii DSM 271]
gi|238693318|sp|B4S5F6|RUVC_PROA2 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|194311158|gb|ACF45553.1| crossover junction endodeoxyribonuclease RuvC [Prosthecochloris
aestuarii DSM 271]
Length = 187
Score = 157 bits (398), Expect = 4e-37, Method: Composition-based stats.
Identities = 48/150 (32%), Positives = 77/150 (51%), Gaps = 1/150 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ ++G+DPG TG+G+V G V+ G I QS+A R+ +Y+ L +I +
Sbjct: 1 MIVLGVDPGSVHTGYGVVLCNGQKFSLVACGLIRLSSNQSIADRIKIIYDELGAIIAEYN 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ A+E +VN++ + LKLGQ R + + + EYAP +K + G G K+
Sbjct: 61 PQRLALETAYVNRNPQSALKLGQVRGAIVALTMNKGLELHEYAPREVKYVLTGKGSAGKE 120
Query: 125 QIHMMLKMLMPESFF-KGKDAADALAIAVC 153
Q+ M + + K D DAL IA+C
Sbjct: 121 QVSYMARHFLNIQEPIKPYDVTDALGIALC 150
>gi|325922869|ref|ZP_08184592.1| Holliday junction endonuclease RuvC [Xanthomonas gardneri ATCC
19865]
gi|325546646|gb|EGD17777.1| Holliday junction endonuclease RuvC [Xanthomonas gardneri ATCC
19865]
Length = 174
Score = 157 bits (398), Expect = 4e-37, Method: Composition-based stats.
Identities = 64/158 (40%), Positives = 92/158 (58%), Gaps = 1/158 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
RI+GIDPG +RTG G++D+ V +V A RL +L GL +VI+ +R
Sbjct: 3 RILGIDPGSQRTGVGVIDIDESGRSRHVYHAPLVLLGEGDFAQRLKRLLHGLGEVIETYR 62
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+E A+E+VF+ K A + LKLG AR AI + L +PV EYA IK A++G G DK
Sbjct: 63 PQEVAIEKVFMGKSADSALKLGHARGAAICAVVLRDLPVHEYAATEIKLALVGKGGADKV 122
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGY 162
Q+ M+ +++ DAADALA+A+ HA+ +
Sbjct: 123 QVQHMVGIMLNLKGKLQPDAADALAVAITHAHVRATAQ 160
>gi|253583871|ref|ZP_04861069.1| crossover junction endodeoxyribonuclease ruvC [Fusobacterium varium
ATCC 27725]
gi|251834443|gb|EES63006.1| crossover junction endodeoxyribonuclease ruvC [Fusobacterium varium
ATCC 27725]
Length = 190
Score = 157 bits (398), Expect = 4e-37, Method: Composition-based stats.
Identities = 40/138 (28%), Positives = 75/138 (54%), Gaps = 1/138 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+R++GIDPG G+G++D + + G + + + RLCQ+YE L+++IK +
Sbjct: 1 MRVLGIDPGTAIVGFGVIDYENNKFKVIDYGCLYTDKDTPMEERLCQIYEKLSELIKKYN 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
PE A+E++F K+ + +GQAR + +L + + Y P +K + G G +KK
Sbjct: 61 PEHMAIEELFFFKNNKTVISVGQARGVLLLCGKQNGLKIQGYTPLQVKTGITGYGKAEKK 120
Query: 125 QIHMMLKMLMP-ESFFKG 141
Q+ +M++ + + K
Sbjct: 121 QVQLMVQKFLGMKELPKP 138
>gi|237736750|ref|ZP_04567231.1| crossover junction endodeoxyribonuclease ruvC [Fusobacterium
mortiferum ATCC 9817]
gi|229420612|gb|EEO35659.1| crossover junction endodeoxyribonuclease ruvC [Fusobacterium
mortiferum ATCC 9817]
Length = 192
Score = 157 bits (398), Expect = 4e-37, Method: Composition-based stats.
Identities = 41/136 (30%), Positives = 74/136 (54%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+R++GIDPG G+ I+D + + G I + + RLC++Y LT++IK +
Sbjct: 1 MRVLGIDPGTAIVGFSILDFENNRFNVIDYGCIYTDKDMPMEDRLCKIYSELTEIIKKYS 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P E A+E++F K+ + +GQAR + +L + ++ Y P +K + G G +KK
Sbjct: 61 PSEMAIEELFYFKNNKTVISVGQARGVIVLCGRQNNLVINHYTPLQVKTGITGYGKAEKK 120
Query: 125 QIHMMLKMLMPESFFK 140
QI +M++ ++ S
Sbjct: 121 QIQLMVQRILGLSEIP 136
>gi|221236281|ref|YP_002518718.1| Holliday junction resolvase [Caulobacter crescentus NA1000]
gi|220965454|gb|ACL96810.1| crossover junction endodeoxyribonuclease ruvC [Caulobacter
crescentus NA1000]
Length = 173
Score = 157 bits (398), Expect = 4e-37, Method: Composition-based stats.
Identities = 76/164 (46%), Positives = 107/164 (65%), Gaps = 8/164 (4%)
Query: 1 MRKSI--------RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQL 52
MR+ + RI+G+DPGLRRTGWG++ V G + ++ G I + A RL L
Sbjct: 1 MREHMMNANRLPTRILGLDPGLRRTGWGVLAVEGSRMTHIAHGVITPDEKAEFADRLLHL 60
Query: 53 YEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIK 112
+EG+T VI+ RP+EAAVE+VF+N +A +TLKLG ARA A+++PA A + V+EY+ +K
Sbjct: 61 FEGITAVIEQHRPDEAAVEEVFLNTNAQSTLKLGHARAAALIAPARAGLLVAEYSTRLVK 120
Query: 113 KAVIGVGHGDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
KAV+G G DK QI M+ L+P + D ADALA+A+ HA
Sbjct: 121 KAVVGTGAADKAQIGFMIARLLPTAGKTTADCADALAVAITHAN 164
>gi|154149136|ref|YP_001407304.1| Holliday junction resolvase [Campylobacter hominis ATCC BAA-381]
gi|166232079|sp|A7I463|RUVC_CAMHC RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|153805145|gb|ABS52152.1| crossover junction endodeoxyribonuclease RuvC [Campylobacter
hominis ATCC BAA-381]
Length = 158
Score = 157 bits (398), Expect = 4e-37, Method: Composition-based stats.
Identities = 48/156 (30%), Positives = 81/156 (51%), Gaps = 2/156 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
++I+GIDPG R G+ +++ + + + +G I ++L F+L Q+ E + + + +
Sbjct: 1 MKILGIDPGTRNMGYAVLEKNVNKISLIEAGLIKMKP-ENLQFQLTQMCEAIDQIFEFHK 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
+E A+E +F + + LKL Q R L +EY P IKK V G DK
Sbjct: 60 IDEVAIESMFYAYNPQSVLKLAQFRGGLSLKILQVFGNFAEYTPLQIKKNVTGKAKADKT 119
Query: 125 QIHMMLKMLMPESF-FKGKDAADALAIAVCHAYHAN 159
Q+ M+K ++ S K D DA+AIA+ HA++
Sbjct: 120 QVAFMVKKMLGISKDIKPLDVTDAIAIAITHAHNLR 155
>gi|223038423|ref|ZP_03608717.1| crossover junction endodeoxyribonuclease RuvC [Campylobacter rectus
RM3267]
gi|222880280|gb|EEF15367.1| crossover junction endodeoxyribonuclease RuvC [Campylobacter rectus
RM3267]
Length = 157
Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats.
Identities = 51/156 (32%), Positives = 77/156 (49%), Gaps = 2/156 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
++I+GIDPG R G+ IV+ + +G I SL +++ +L EGL + KN +
Sbjct: 1 MKILGIDPGSRNCGYAIVEKTPVKTALIEAGLIKIKPN-SLQYQITELCEGLDLIFKNHK 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
+E A+E +F + LKL Q R L EY P +KK V G DK+
Sbjct: 60 FDEVAIEDIFFAYNPKTVLKLAQFRGALSLKILQLHGDFVEYTPLQVKKTVTGKAKADKE 119
Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHAN 159
Q+ M+K ++ K D DA+AIA+ HA +
Sbjct: 120 QVAFMVKKILGITKEIKPLDVTDAIAIALTHANNLR 155
>gi|167035196|ref|YP_001670427.1| Holliday junction resolvase [Pseudomonas putida GB-1]
gi|189046074|sp|B0KTJ4|RUVC_PSEPG RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|166861684|gb|ABZ00092.1| crossover junction endodeoxyribonuclease RuvC [Pseudomonas putida
GB-1]
Length = 174
Score = 157 bits (397), Expect = 5e-37, Method: Composition-based stats.
Identities = 60/154 (38%), Positives = 97/154 (62%), Gaps = 1/154 (0%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
I+GIDPG R TG+G+V +V+SG I + + L RL ++ G++++I P
Sbjct: 4 ILGIDPGSRITGYGVVRQTARGCEYVASGCIRTGSGE-LHERLQIVFRGVSEIIAQHGPV 62
Query: 67 EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
+E+VF+ ++A + LKLGQAR AI++ A A + ++EY+ +K+AV G G +K+Q+
Sbjct: 63 TMGIERVFMARNADSALKLGQARGAAIVAAAEAGLEIAEYSATQVKQAVAGTGGANKEQV 122
Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
MM+ L+ + DA+DALAIA+CHA+ +S
Sbjct: 123 MMMVMHLLKLTQKPQIDASDALAIALCHAHTRSS 156
>gi|154175236|ref|YP_001409235.1| Holliday junction resolvase [Campylobacter curvus 525.92]
gi|166231592|sp|A7H193|RUVC_CAMC5 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|112803505|gb|EAU00849.1| crossover junction endodeoxyribonuclease RuvC [Campylobacter curvus
525.92]
Length = 157
Score = 157 bits (397), Expect = 5e-37, Method: Composition-based stats.
Identities = 48/154 (31%), Positives = 77/154 (50%), Gaps = 2/154 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
++I+GIDPG R G+ I++ + +G I L +++ +L EGL + KN +
Sbjct: 1 MKILGIDPGSRNCGYAIIEKNVRKTALIEAGLIKIKPNT-LQYQITELCEGLDVIFKNHK 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
+E A+E +F + LKL Q R L +EY P +KKAV G K+
Sbjct: 60 FDEVAIEDIFFAYNPKTVLKLAQFRGALSLKILQLHGDFAEYTPLQVKKAVTGKAKAQKE 119
Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYH 157
Q+ M+K ++ K D DA+A+A+ HA +
Sbjct: 120 QVAFMVKKILGITKEIKPLDITDAIAVALTHANN 153
>gi|258648397|ref|ZP_05735866.1| crossover junction endodeoxyribonuclease RuvC [Prevotella tannerae
ATCC 51259]
gi|260851567|gb|EEX71436.1| crossover junction endodeoxyribonuclease RuvC [Prevotella tannerae
ATCC 51259]
Length = 235
Score = 157 bits (397), Expect = 5e-37, Method: Composition-based stats.
Identities = 54/164 (32%), Positives = 87/164 (53%), Gaps = 5/164 (3%)
Query: 1 MRKSI--RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTD 58
MRK+I I+GIDPG G+G++ + + + + G I + + +L +++E +
Sbjct: 27 MRKTIDKVILGIDPGTNLLGYGVLHIRNNKVEMEAMGVIDLRKVKDVYLKLGRIHERIIG 86
Query: 59 VIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGV 118
+I ++ P+E A+E F K+ + LKLG+A+ +AI + IP+ EYAP IK A+ G
Sbjct: 87 IIDSFHPDELAIEAPFFGKNIQSMLKLGRAQGVAIAAAISRDIPIHEYAPLKIKMAITGN 146
Query: 119 GHGDKKQIHMMLKMLMPESF---FKGKDAADALAIAVCHAYHAN 159
G K+Q+ LK ++ DA DALA A CH
Sbjct: 147 GQASKEQVADFLKRILSLKEEQMLSYMDATDALAAAYCHYLQDG 190
>gi|222824549|ref|YP_002576123.1| crossover junction endodeoxyribonuclease RuvC [Campylobacter lari
RM2100]
gi|254767464|sp|B9KE83|RUVC_CAMLR RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|222539770|gb|ACM64871.1| crossover junction endodeoxyribonuclease RuvC [Campylobacter lari
RM2100]
Length = 158
Score = 157 bits (397), Expect = 5e-37, Method: Composition-based stats.
Identities = 48/151 (31%), Positives = 76/151 (50%), Gaps = 2/151 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
++++GIDPG R G+ IV+ + + +G I L +++ +L EGL + KN +
Sbjct: 1 MKVLGIDPGSRYCGYAIVEKINNKNQLIEAGLIKIKPN-DLQYQITELCEGLDLIFKNHQ 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
+E A+E +F + LKL Q R L +EY P +KK V G K+
Sbjct: 60 FDEVAIEDIFFAYNPKTVLKLAQFRGALSLKILQMHGEFAEYTPLQVKKTVTGKAKATKE 119
Query: 125 QIHMMLKMLMPESF-FKGKDAADALAIAVCH 154
Q+ M+K L+ S K D DA+A+A+ H
Sbjct: 120 QVAFMVKRLLGISKDIKPLDITDAIAVALTH 150
>gi|213613175|ref|ZP_03371001.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
serovar Typhi str. E98-2068]
Length = 141
Score = 157 bits (397), Expect = 5e-37, Method: Composition-based stats.
Identities = 55/140 (39%), Positives = 86/140 (61%), Gaps = 1/140 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G L ++ SG I + L RL +Y G+T++I ++P
Sbjct: 3 IILGIDPGSRITGYGVIRQVGRQLTYLGSGCIRT-KVDDLPSRLKLIYAGVTEIITQFQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQVF+ K+A + LKLGQAR +AI++ +PV EYA +K+ V+G+G +K Q
Sbjct: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121
Query: 126 IHMMLKMLMPESFFKGKDAA 145
+ M++ L+ DAA
Sbjct: 122 VQHMVRTLLKLPANPQADAA 141
>gi|283953665|ref|ZP_06371196.1| crossover junction endodeoxyribonuclease RuvC [Campylobacter jejuni
subsp. jejuni 414]
gi|283794706|gb|EFC33444.1| crossover junction endodeoxyribonuclease RuvC [Campylobacter jejuni
subsp. jejuni 414]
Length = 158
Score = 157 bits (397), Expect = 5e-37, Method: Composition-based stats.
Identities = 49/152 (32%), Positives = 76/152 (50%), Gaps = 2/152 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
++I+GIDPG R G+ I+++ + +G I L +++ +L EGL + KN
Sbjct: 1 MKILGIDPGSRNCGYAIIEINKTKNILIEAGLIKIKPST-LQYQITELCEGLDLIFKNHS 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
+E A+E +F + LKL Q R L +EY P +KKAV G K+
Sbjct: 60 FDEVAIEDIFFAYNPKTVLKLAQFRGALSLKILQIHGDFAEYTPLQVKKAVTGKAKATKE 119
Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHA 155
Q+ M+K L+ K D DA+A+A+ HA
Sbjct: 120 QVAFMVKRLLGLRKDIKPLDITDAIAVALTHA 151
>gi|42520047|ref|NP_965962.1| crossover junction endodeoxyribonuclease RuvC [Wolbachia
endosymbiont of Drosophila melanogaster]
gi|59798790|sp|Q73IL5|RUVC_WOLPM RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|42409784|gb|AAS13896.1| crossover junction endodeoxyribonuclease RuvC [Wolbachia
endosymbiont of Drosophila melanogaster]
Length = 162
Score = 157 bits (397), Expect = 5e-37, Method: Composition-based stats.
Identities = 64/160 (40%), Positives = 100/160 (62%), Gaps = 1/160 (0%)
Query: 4 SIRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
++IIG+DPG+ +TGW I+ + +N+ F+ GTI + + RL ++E L VI
Sbjct: 1 MVKIIGLDPGISKTGWAIISLNEKNNIEFLGGGTISTDGKLGTGERLHIIFEQLKKVISL 60
Query: 63 WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
+ P EAAVE++FVNK+ ++L LG AR + IL+ + ++ ++EY N +KK++ G GH D
Sbjct: 61 YSPNEAAVEKIFVNKNPKSSLTLGYARGVVILALKITKLTMNEYDANYVKKSITGNGHAD 120
Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGY 162
K QI M+K ++ K ADALA+A+CHAY S +
Sbjct: 121 KDQIIFMVKQIVKNLSIKCHHVADALAVAICHAYTKGSCF 160
>gi|315928463|gb|EFV07775.1| crossover junction endodeoxyribonuclease RuvC [Campylobacter jejuni
subsp. jejuni DFVF1099]
Length = 184
Score = 157 bits (397), Expect = 5e-37, Method: Composition-based stats.
Identities = 50/153 (32%), Positives = 77/153 (50%), Gaps = 2/153 (1%)
Query: 4 SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+++I+GIDPG R G+ I++ + +G I L +++ +L EGL + KN
Sbjct: 26 NLKILGIDPGSRNCGYAIIEANKGKNILIEAGLIKIKPST-LQYQITELCEGLDLIFKNH 84
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
+E A+E +F + LKL Q R L +EY P +KKAV G K
Sbjct: 85 SFDEVAIEDIFFAYNPKTVLKLAQFRGALSLKILQIHGDFAEYTPLQVKKAVTGKAKATK 144
Query: 124 KQIHMMLKMLMPESF-FKGKDAADALAIAVCHA 155
+Q+ M+K L+ S K D DA+A+A+ HA
Sbjct: 145 EQVAFMVKRLLGLSKDIKPLDITDAIAVALTHA 177
>gi|295688116|ref|YP_003591809.1| crossover junction endodeoxyribonuclease RuvC [Caulobacter segnis
ATCC 21756]
gi|295430019|gb|ADG09191.1| crossover junction endodeoxyribonuclease RuvC [Caulobacter segnis
ATCC 21756]
Length = 169
Score = 156 bits (396), Expect = 6e-37, Method: Composition-based stats.
Identities = 76/155 (49%), Positives = 105/155 (67%)
Query: 2 RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
R IRI+G+DPGLRRTGWG++ + G + V+ G I + A RL L+EG+ VI+
Sbjct: 6 RSPIRILGLDPGLRRTGWGVLTIDGARMSHVAHGVIAPDEKADFAQRLLHLFEGICAVIE 65
Query: 62 NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
RP+EAAVE+VF+N +A +TLKLG ARA A+++PA A +PV+EY+ +KKAV+G G
Sbjct: 66 QHRPDEAAVEEVFLNTNAQSTLKLGHARAAALIAPARAGLPVAEYSTRLVKKAVVGTGAA 125
Query: 122 DKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
DK QI M+ L+P + D ADALA+A+ HA
Sbjct: 126 DKAQIGFMIARLLPTAGKTTADCADALAVAITHAN 160
>gi|262037582|ref|ZP_06011038.1| crossover junction endodeoxyribonuclease RuvC [Leptotrichia
goodfellowii F0264]
gi|261748404|gb|EEY35787.1| crossover junction endodeoxyribonuclease RuvC [Leptotrichia
goodfellowii F0264]
Length = 189
Score = 156 bits (396), Expect = 6e-37, Method: Composition-based stats.
Identities = 39/136 (28%), Positives = 71/136 (52%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPG G+ ++D + G I + + + RL ++Y+GL ++IK W
Sbjct: 1 MRILGIDPGTAIVGYSVIDFEKGKYKVLDYGCIYTDKDEDMPVRLEEIYDGLDNIIKLWE 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P + A+E+++ K+ +K+GQAR + L + + Y P +K + G +KK
Sbjct: 61 PSDMAIEELYFFKNQKTIVKVGQARGVITLVGQKNNMNIYSYTPLQVKMGIASYGRAEKK 120
Query: 125 QIHMMLKMLMPESFFK 140
QI M+K+++
Sbjct: 121 QIQEMVKIILGLEEIP 136
>gi|310823012|ref|YP_003955370.1| crossover junction endodeoxyribonuclease ruvc [Stigmatella
aurantiaca DW4/3-1]
gi|309396084|gb|ADO73543.1| Crossover junction endodeoxyribonuclease RuvC [Stigmatella
aurantiaca DW4/3-1]
Length = 194
Score = 156 bits (396), Expect = 7e-37, Method: Composition-based stats.
Identities = 61/168 (36%), Positives = 90/168 (53%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M +R++G+DPG R G+G+V+ L + G I L RL L+ LT ++
Sbjct: 1 MESHLRVLGVDPGSRFMGYGVVEERRGQLVHLGHGVIKVDPEAPLHQRLMVLHVELTAML 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
K +RPE AVE VF ++A + L LG AR +A+L+ A A + V EYAP +K++V G
Sbjct: 61 KKYRPESVAVEGVFTFRNARSALVLGHARGVALLAAAQAGLSVHEYAPARVKRSVGAGGA 120
Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
K+ I M+ L+ + DA+DALA+A+CH AS
Sbjct: 121 SGKESIARMVCSLLKLEAIERADASDALAVALCHLNQGRVAGLAPASS 168
>gi|212550497|ref|YP_002308814.1| Holliday junction resolvase [Candidatus Azobacteroides
pseudotrichonymphae genomovar. CFP2]
gi|212548735|dbj|BAG83403.1| crossover junction endodeoxyribonuclease RuvC [Candidatus
Azobacteroides pseudotrichonymphae genomovar. CFP2]
Length = 190
Score = 156 bits (396), Expect = 7e-37, Method: Composition-based stats.
Identities = 47/165 (28%), Positives = 80/165 (48%), Gaps = 7/165 (4%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
MR+ I+G+DPG G+G++ ++ N + +S RL ++ + ++I
Sbjct: 1 MREERIILGVDPGTSVMGYGLIRISEGNPFLLKMEVFKLNKSESHYKRLLHIFNKILELI 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
+ P E A+E F+ ++ + LKLG+ + + I + I V EY P IK AV G G
Sbjct: 61 DEFFPNELAIESPFLGQNVQSMLKLGRVQGVVIAAAMSRSISVYEYTPLKIKMAVTGNGR 120
Query: 121 GDKKQIHMMLKMLMPESFFKG-------KDAADALAIAVCHAYHA 158
K+Q+ +L+ + S + DA D LA A+CH +
Sbjct: 121 ASKEQVAGILRNYLRLSKDRTQLDEYLSLDATDGLATALCHFFQG 165
>gi|33861610|ref|NP_893171.1| crossover junction endodeoxyribonuclease RuvC [Prochlorococcus
marinus subsp. pastoris str. CCMP1986]
gi|44888409|sp|Q7V132|RUVC_PROMP RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|33634187|emb|CAE19513.1| Crossover junction endodeoxyribonuclease RuvC [Prochlorococcus
marinus subsp. pastoris str. CCMP1986]
Length = 157
Score = 156 bits (396), Expect = 8e-37, Method: Composition-based stats.
Identities = 53/150 (35%), Positives = 85/150 (56%), Gaps = 2/150 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RIIGIDPGL R G+GI+++ + F+ G I + + RL +++ L +I W+
Sbjct: 1 MRIIGIDPGLGRVGYGIIEIQNEKKIFLDCGVIETNKNKGEGDRLYEIFNDLNTLIDQWK 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ AAVE+ F + T+ + QAR + ++ A I VSEYAP+ +K + G G KK
Sbjct: 61 PDIAAVEKFFFYRS-STTISVVQARGVIMMVFAFKSIKVSEYAPSQVKLTIAGSGKASKK 119
Query: 125 QIHMMLKMLMPESF-FKGKDAADALAIAVC 153
++ + + + K D+ADALAIA+
Sbjct: 120 EVIEAVMYNLNLTRAPKPDDSADALAIALT 149
>gi|308183031|ref|YP_003927158.1| Holliday junction resolvase [Helicobacter pylori PeCan4]
gi|308065216|gb|ADO07108.1| Holliday junction resolvase [Helicobacter pylori PeCan4]
Length = 157
Score = 156 bits (396), Expect = 8e-37, Method: Composition-based stats.
Identities = 48/154 (31%), Positives = 77/154 (50%), Gaps = 2/154 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ I+GIDPG R+ G+ I+ + L +++G I L ++ L E L ++ +
Sbjct: 1 MHILGIDPGSRKCGYAIISHTSNKLSLITAGFIN-ITTTRLQEQILDLIEALDCLLDRYE 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
E A+E +F + + +KL Q R L SEY P +KKA+ G G K+
Sbjct: 60 VNEVAIEDIFFGYNPKSVIKLAQFRGALSLKILERIGNFSEYTPLQVKKALTGNGKAAKE 119
Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYH 157
Q+ M+K L+ S K D +DA+A+A+ HA
Sbjct: 120 QVAFMVKRLLNITSEIKPLDISDAIAVAITHAQR 153
>gi|325274573|ref|ZP_08140631.1| Holliday junction resolvase [Pseudomonas sp. TJI-51]
gi|324100300|gb|EGB98088.1| Holliday junction resolvase [Pseudomonas sp. TJI-51]
Length = 174
Score = 156 bits (396), Expect = 8e-37, Method: Composition-based stats.
Identities = 60/154 (38%), Positives = 97/154 (62%), Gaps = 1/154 (0%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
I+GIDPG R TG+G+V +V+SG I + + L RL ++ G++++I P
Sbjct: 4 ILGIDPGSRITGYGVVRQTARGCDYVASGCIRTGSGE-LHERLQIVFRGVSEIITQHGPV 62
Query: 67 EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
+E+VF+ ++A + LKLGQAR AI++ A A + ++EY+ +K+AV G G +K+Q+
Sbjct: 63 TMGIERVFMARNADSALKLGQARGAAIVAAAEAGLEIAEYSATQVKQAVAGTGGANKEQV 122
Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
MM+ L+ + DA+DALAIA+CHA+ +S
Sbjct: 123 MMMVMHLLKLTQKPQIDASDALAIALCHAHTRSS 156
>gi|257125464|ref|YP_003163578.1| Holliday junction resolvase [Leptotrichia buccalis C-1013-b]
gi|257049403|gb|ACV38587.1| crossover junction endodeoxyribonuclease RuvC [Leptotrichia
buccalis C-1013-b]
Length = 189
Score = 156 bits (395), Expect = 8e-37, Method: Composition-based stats.
Identities = 40/136 (29%), Positives = 73/136 (53%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPG G+ +VD + G I + + + RL ++Y+G+ ++I+ W+
Sbjct: 1 MRILGIDPGTAIVGYAVVDYENGKYKPLDYGCIFTDKDEDMPVRLEKIYDGIENIIQLWK 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P + A+E +F K+ +K+GQAR + L+ ++ + Y P +K + G DKK
Sbjct: 61 PVDMAIEDLFFFKNQKTVIKVGQARGVITLAGQKNKLNLYSYTPLQVKMGIASYGRADKK 120
Query: 125 QIHMMLKMLMPESFFK 140
QI M+K+++
Sbjct: 121 QIQEMVKLMLKLDEIP 136
>gi|330836552|ref|YP_004411193.1| Crossover junction endodeoxyribonuclease ruvC [Spirochaeta
coccoides DSM 17374]
gi|329748455|gb|AEC01811.1| Crossover junction endodeoxyribonuclease ruvC [Spirochaeta
coccoides DSM 17374]
Length = 184
Score = 156 bits (395), Expect = 8e-37, Method: Composition-based stats.
Identities = 48/167 (28%), Positives = 81/167 (48%), Gaps = 2/167 (1%)
Query: 2 RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
S+RI+GIDPGL +TGWG+VD+ VS G + + Q L R+ + + +
Sbjct: 19 TNSMRILGIDPGLAQTGWGVVDIIDQRYRPVSFGVVTTATSQDLGLRIHYIASNIGRLAA 78
Query: 62 NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
A+E VF K+ + + + + + A + V ++P IK AV G G
Sbjct: 79 EHEVVMVAMEDVFFTKNISSAIPVAKVIGAIMHQLAGQGLDVKMFSPPQIKTAVTGYGSA 138
Query: 122 DKKQIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
+K Q+ M+++++ K +ADALA+AVC +S ++
Sbjct: 139 EKHQVQEMMRLMLDLKEIPKPNHSADALAVAVC-CASYSSTERRLGG 184
>gi|321472928|gb|EFX83897.1| hypothetical protein DAPPUDRAFT_239450 [Daphnia pulex]
Length = 165
Score = 156 bits (395), Expect = 8e-37, Method: Composition-based stats.
Identities = 65/158 (41%), Positives = 100/158 (63%)
Query: 3 KSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
K + ++G+DPGLR TGWG V + + + SG I + + RL L++ LT +I+
Sbjct: 2 KPMIVLGLDPGLRTTGWGSVFLKDKEVIYQPSGLIKTPEKCPTPERLAYLFQALTTIIRE 61
Query: 63 WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
+ PEE +VE+VFVNK+ ++LKL AR + + +PA+ +PV YAPN +KKA+ G GH D
Sbjct: 62 YCPEEVSVEEVFVNKNPKSSLKLALARGVVLCAPAVIGLPVFSYAPNYMKKALSGYGHAD 121
Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
K QI ++ ++ KDAADAL +A+CH+Y ++
Sbjct: 122 KNQIGWAVQQILKLKTPPQKDAADALGLAICHSYAKST 159
>gi|217077386|ref|YP_002335104.1| crossover junction endodeoxyribonuclease RuvC [Thermosipho
africanus TCF52B]
gi|226725477|sp|B7ICN6|RUVC_THEAB RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|217037241|gb|ACJ75763.1| crossover junction endodeoxyribonuclease RuvC [Thermosipho
africanus TCF52B]
Length = 157
Score = 156 bits (395), Expect = 8e-37, Method: Composition-based stats.
Identities = 41/136 (30%), Positives = 76/136 (55%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RIIG+DPG G+GI++ + + V+ G I + + RL +Y+ ++++ +
Sbjct: 1 MRIIGVDPGYGILGYGILEKNKNKISHVTHGVITTEKDVPMYKRLGYIYDRFVELLEEYS 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ A+E +F K+ + +G+AR + +L+ + IP+ E+ P +K V G G DKK
Sbjct: 61 PDACAIESLFFYKNVKTAIHVGEARGVILLASSQRNIPLYEFTPYQVKNNVTGYGRADKK 120
Query: 125 QIHMMLKMLMPESFFK 140
Q+ M+KML+ +
Sbjct: 121 QVQKMVKMLLNLNDIP 136
>gi|16127468|ref|NP_422032.1| Holliday junction resolvase [Caulobacter crescentus CB15]
gi|20978751|sp|Q9A3G6|RUVC_CAUCR RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|13424922|gb|AAK25200.1| Holliday junction resolvase [Caulobacter crescentus CB15]
Length = 169
Score = 156 bits (395), Expect = 9e-37, Method: Composition-based stats.
Identities = 74/151 (49%), Positives = 103/151 (68%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
RI+G+DPGLRRTGWG++ V G + ++ G I + A RL L+EG+T VI+ RP
Sbjct: 10 RILGLDPGLRRTGWGVLAVEGSRMTHIAHGVITPDEKAEFADRLLHLFEGITAVIEQHRP 69
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+EAAVE+VF+N +A +TLKLG ARA A+++PA A + V+EY+ +KKAV+G G DK Q
Sbjct: 70 DEAAVEEVFLNTNAQSTLKLGHARAAALIAPARAGLLVAEYSTRLVKKAVVGTGAADKAQ 129
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
I M+ L+P + D ADALA+A+ HA
Sbjct: 130 IGFMIARLLPTAGKTTADCADALAVAITHAN 160
>gi|104783074|ref|YP_609572.1| Holliday junction resolvase [Pseudomonas entomophila L48]
gi|123255378|sp|Q1I6E7|RUVC_PSEE4 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|95112061|emb|CAK16788.1| holliday junction nuclease [Pseudomonas entomophila L48]
Length = 174
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 60/154 (38%), Positives = 99/154 (64%), Gaps = 1/154 (0%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
I+GIDPG R TG+G+V +V+SG I + + L RL ++ G++++I+ P
Sbjct: 4 ILGIDPGSRITGFGVVRQTARGCEYVASGCIRTGGGE-LHERLQIVFRGVSEIIRQHGPV 62
Query: 67 EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
+E+VF+ ++A + LKLGQAR AI++ A A + ++EY+ + +K+AV G G +K+Q+
Sbjct: 63 TMGIERVFMARNADSALKLGQARGAAIVAAAEAGLEIAEYSASQVKQAVAGTGGANKEQV 122
Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
MM+ L+ + DA+DALAIA+CHA+ +S
Sbjct: 123 MMMVMHLLKLTQKPQIDASDALAIALCHAHTRSS 156
>gi|91793240|ref|YP_562891.1| crossover junction endodeoxyribonuclease RuvC [Shewanella
denitrificans OS217]
gi|123060935|sp|Q12N08|RUVC_SHEDO RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|91715242|gb|ABE55168.1| crossover junction endodeoxyribonuclease RuvC [Shewanella
denitrificans OS217]
Length = 173
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 64/163 (39%), Positives = 100/163 (61%), Gaps = 2/163 (1%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+G+DPG R TG+G++ G ++ SG I + + L RL Q++EGLT++I+ ++P
Sbjct: 3 IILGVDPGSRITGYGVIQCQGRQQIYLGSGCIRTSSDE-LPIRLKQIFEGLTEIIRQYQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
E+ A+E+VF+ K+A + LKLGQAR AI++ A +PV+EY+ IK AV+G G K Q
Sbjct: 62 EQFAIERVFMAKNADSALKLGQARGAAIVAATFADLPVAEYSATQIKSAVVGTGRAQKAQ 121
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
+ M++ L DAADAL +A+CH + S + +
Sbjct: 122 VQHMIQQLFKLPAAPQADAADALGVALCHYHTHQS-LVAMGGR 163
>gi|331000257|ref|ZP_08323941.1| crossover junction endodeoxyribonuclease RuvC [Parasutterella
excrementihominis YIT 11859]
gi|329572423|gb|EGG54076.1| crossover junction endodeoxyribonuclease RuvC [Parasutterella
excrementihominis YIT 11859]
Length = 201
Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats.
Identities = 52/153 (33%), Positives = 88/153 (57%), Gaps = 2/153 (1%)
Query: 2 RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
+K++RI+GIDPGL TG+G VD + +V+SG + + L+ RL +++ L+ +I+
Sbjct: 3 QKAVRILGIDPGLNHTGYGFVDFVPGHFTYVASGVLNVPAGE-LSDRLGFIFKSLSALIE 61
Query: 62 NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
P A++E+ F+N +A +++ L AR A+ + A I E + IKK+V G G
Sbjct: 62 EHHPNVASIEKTFLNTNAQSSMLLSHARGAAMCAVACHSILCKEISTREIKKSVTGYGAA 121
Query: 122 DKKQIHMMLKMLMPESFFK-GKDAADALAIAVC 153
DK+Q+ M+ + + D +DALA A+C
Sbjct: 122 DKEQVQQMVLRHLKLEDTRFSPDESDALATAIC 154
>gi|313158109|gb|EFR57514.1| crossover junction endodeoxyribonuclease RuvC [Alistipes sp. HGB5]
Length = 196
Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats.
Identities = 46/163 (28%), Positives = 86/163 (52%), Gaps = 1/163 (0%)
Query: 8 IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEE 67
+GIDPG G+G++++ G ++ V G I +L ++E + +I + P E
Sbjct: 1 MGIDPGTNYMGYGVLEIDGRSVRSVVLGDIDLHKLSDPYVKLRYIFERVGALIDQYAPRE 60
Query: 68 AAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIH 127
A+E F ++ + LKLG+A+ +A+ + +PVSEYAP IK+++ G G K+Q+
Sbjct: 61 VALESPFFGENVQSMLKLGRAQGVAMAAALSRGLPVSEYAPMRIKQSITGRGSAAKEQVA 120
Query: 128 MMLKMLMPES-FFKGKDAADALAIAVCHAYHANSGYYKIASQD 169
++ ++ K DA D +A+A+CH + ++ +
Sbjct: 121 AIVCRILSLEQPPKRLDATDGMAVALCHHFTISNPLNAAMGDE 163
>gi|120598879|ref|YP_963453.1| Holliday junction resolvase [Shewanella sp. W3-18-1]
gi|146293035|ref|YP_001183459.1| Holliday junction resolvase [Shewanella putrefaciens CN-32]
gi|166233300|sp|A4Y6S7|RUVC_SHEPC RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|166233302|sp|A1RJQ4|RUVC_SHESW RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|120558972|gb|ABM24899.1| crossover junction endodeoxyribonuclease RuvC [Shewanella sp.
W3-18-1]
gi|145564725|gb|ABP75660.1| crossover junction endodeoxyribonuclease RuvC [Shewanella
putrefaciens CN-32]
gi|319426435|gb|ADV54509.1| crossover junction endodeoxyribonuclease RuvC [Shewanella
putrefaciens 200]
Length = 173
Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats.
Identities = 64/155 (41%), Positives = 103/155 (66%), Gaps = 1/155 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+G+DPG R TG+G++ G + ++ SG I + + L+ RL Q+++G+T++I+ ++P
Sbjct: 3 IILGVDPGSRITGYGVIQCQGRHQIYLGSGCIRTSSEE-LSGRLKQIFDGITEIIRQYQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+E A+E+VF+ K+A + LKLGQAR AI++ +A +PV+EY+ IK AV+G G K+Q
Sbjct: 62 DEFAIERVFMAKNADSALKLGQARGAAIVAATVANLPVAEYSATQIKSAVVGTGRAKKEQ 121
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
I M++ L+ DAADAL +AVCH + S
Sbjct: 122 IQHMIQQLLKLPAAPQADAADALGVAVCHYHTRQS 156
>gi|237753475|ref|ZP_04583955.1| holliday junction resolvase [Helicobacter winghamensis ATCC
BAA-430]
gi|229375742|gb|EEO25833.1| holliday junction resolvase [Helicobacter winghamensis ATCC
BAA-430]
Length = 163
Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats.
Identities = 45/154 (29%), Positives = 74/154 (48%), Gaps = 2/154 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ I+GIDPG R G+ I+ + + + +G I + L ++ + EG+ V+K +
Sbjct: 1 MNILGIDPGSRNCGYAIIKLENGAISLIEAGLIK-IKERILQDQIVEFVEGIDLVLKQHK 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
+ A+E +F + +KL Q R L +EY P +KKA+ G G K+
Sbjct: 60 IDSVAIEDMFYAYNPKTVIKLAQFRGALSLKILQELGNFAEYTPLQVKKALTGNGKAAKE 119
Query: 125 QIHMMLKMLMPES-FFKGKDAADALAIAVCHAYH 157
Q+ M+K L+ K D DA+AIA+ H
Sbjct: 120 QVAFMVKRLLGIKGEIKPLDITDAIAIAITHVQR 153
>gi|217967995|ref|YP_002353501.1| crossover junction endodeoxyribonuclease RuvC [Dictyoglomus
turgidum DSM 6724]
gi|226725468|sp|B8E2P3|RUVC_DICTD RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|217337094|gb|ACK42887.1| crossover junction endodeoxyribonuclease RuvC [Dictyoglomus
turgidum DSM 6724]
Length = 158
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 43/153 (28%), Positives = 80/153 (52%), Gaps = 1/153 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ +IG DPG TG+GI++ D + + G + + + RL L++ ++ ++ +
Sbjct: 1 MVVIGFDPGTAITGYGILNKGEDGISIIEYGALTTPSGWGIGRRLNYLFDQVSSLLDLYN 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ +E +F NK+ + +GQA+ + IL+ + +S P +K +V+G G K
Sbjct: 61 PDVVVMENIFFNKNIKTAINIGQAQGVIILAAEQHQKEISILTPLEVKLSVVGYGRATKN 120
Query: 125 QIHMMLKMLMPES-FFKGKDAADALAIAVCHAY 156
QI M+K ++ K D ADALA+ + + Y
Sbjct: 121 QIQYMVKEILKLKDIPKPDDVADALALCISYIY 153
>gi|315498699|ref|YP_004087503.1| crossover junction endodeoxyribonuclease ruvc [Asticcacaulis
excentricus CB 48]
gi|315416711|gb|ADU13352.1| crossover junction endodeoxyribonuclease RuvC [Asticcacaulis
excentricus CB 48]
Length = 192
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 79/163 (48%), Positives = 109/163 (66%), Gaps = 5/163 (3%)
Query: 1 MRKS-IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDV 59
M+ + IRIIG+DPGLRR GWG++DV G L +V+ G I+ + L+ RL L+E L+ V
Sbjct: 1 MQNNRIRIIGLDPGLRRLGWGVLDVEGARLNWVAHGVILPDEKAELSVRLLYLFEELSKV 60
Query: 60 IKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVG 119
I +RP+EAA+E+ FVN + +TLKLG ARA A+L+PA A + V+EYA +KK+V+G G
Sbjct: 61 ILLYRPQEAAIEETFVNMNPASTLKLGHARAAAMLAPAQAGLSVAEYAALDVKKSVVGAG 120
Query: 120 HGDKKQIHMMLKMLMPESFF----KGKDAADALAIAVCHAYHA 158
DK QI M+K L+P + D ADALA+AV HA+
Sbjct: 121 RADKDQILFMIKRLLPRAAAAENGLTPDMADALAVAVTHAHKR 163
>gi|209965102|ref|YP_002298017.1| crossover junction endodeoxyribonuclease RuvC [Rhodospirillum
centenum SW]
gi|209958568|gb|ACI99204.1| crossover junction endodeoxyribonuclease RuvC [Rhodospirillum
centenum SW]
Length = 179
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 77/165 (46%), Positives = 111/165 (67%)
Query: 4 SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
IRI+G+DPGLR TGWG++DVAG L V+ GTI + +Q L RL +L++GL +VI W
Sbjct: 10 PIRILGLDPGLRHTGWGVIDVAGSRLTHVADGTINTDEKQDLPRRLERLHDGLVEVIGVW 69
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
RP+E AVE+ N++ +TLKLG AR +A+L A A + V +Y P +KK+V+G GH +K
Sbjct: 70 RPDEVAVEETLANRNPQSTLKLGMARGVALLVGARAGLVVEQYLPMIVKKSVVGTGHAEK 129
Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
+Q+ M++ML+P DAADALA+A+CHA+ A + +
Sbjct: 130 EQVQHMVRMLLPGFQRSSADAADALAVAICHAHTAGTNRRVMEGM 174
>gi|332878375|ref|ZP_08446099.1| crossover junction endodeoxyribonuclease RuvC [Capnocytophaga sp.
oral taxon 329 str. F0087]
gi|332683700|gb|EGJ56573.1| crossover junction endodeoxyribonuclease RuvC [Capnocytophaga sp.
oral taxon 329 str. F0087]
Length = 192
Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats.
Identities = 52/157 (33%), Positives = 82/157 (52%), Gaps = 3/157 (1%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG G+G++ V G+ + G I +L +++E +T +I+++ P
Sbjct: 10 IILGIDPGTNLMGYGVLRVTGNKAVMETMGVIDLRKYAGPYLKLGRIFERVTGIIESYLP 69
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+E A+E F K+ + LKLG+A+ +AI + IP++EYAP IK A+ G G K+Q
Sbjct: 70 DEMAIEAPFFGKNVQSMLKLGRAQGVAIAAAIHRDIPITEYAPLKIKMAITGNGQASKEQ 129
Query: 126 IHMMLKMLMPESF---FKGKDAADALAIAVCHAYHAN 159
+ ML ++ DA D LA A CH
Sbjct: 130 VAGMLTRMLHIREEDMLPYMDATDGLAAAYCHFLQMG 166
>gi|218563316|ref|YP_002345096.1| Holliday junction resolvase [Campylobacter jejuni subsp. jejuni
NCTC 11168]
gi|20978756|sp|Q9PLU8|RUVC_CAMJE RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|112361023|emb|CAL35824.1| crossover junction endodeoxyribonuclease [Campylobacter jejuni
subsp. jejuni NCTC 11168]
Length = 160
Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats.
Identities = 50/153 (32%), Positives = 77/153 (50%), Gaps = 2/153 (1%)
Query: 4 SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+++I+GIDPG R G+ I++ + +G I L +++ +L EGL + KN
Sbjct: 2 NLKILGIDPGSRNCGYAIIEADKGKNILIEAGLIKIKPST-LQYQITELCEGLDLIFKNH 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
+E A+E +F + LKL Q R L +EY P +KKAV G K
Sbjct: 61 SFDEVAIEDIFFAYNPKTVLKLAQFRGALSLKILQIHGDFAEYTPLQVKKAVTGKAKATK 120
Query: 124 KQIHMMLKMLMPESF-FKGKDAADALAIAVCHA 155
+Q+ M+K L+ S K D DA+A+A+ HA
Sbjct: 121 EQVAFMVKRLLGLSKDIKPLDITDAIAVALTHA 153
>gi|294673564|ref|YP_003574180.1| crossover junction endodeoxyribonuclease RuvC [Prevotella
ruminicola 23]
gi|294473525|gb|ADE82914.1| crossover junction endodeoxyribonuclease RuvC [Prevotella
ruminicola 23]
Length = 189
Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats.
Identities = 55/162 (33%), Positives = 82/162 (50%), Gaps = 5/162 (3%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M K I+GIDPG G+G++ V ++ G I +L ++E +T +I
Sbjct: 1 MEK--IILGIDPGTNLMGYGLLKVVDGKAQMMTMGVIDLRKFPDAYLKLGHIFERVTGII 58
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
+ P+E A+E F K+ + LKLG+A+ AI + +P+ EYAP IK A+ G G
Sbjct: 59 DGFLPDEMAIEAPFFGKNVQSMLKLGRAQGTAIAAAVHHGVPIHEYAPMKIKMALTGNGG 118
Query: 121 GDKKQIHMMLKMLM---PESFFKGKDAADALAIAVCHAYHAN 159
K+Q+ ML+ L+ + K DA DALA A CH
Sbjct: 119 ASKEQVAGMLQRLLKIPNDEMGKYMDATDALAAAYCHFLQMG 160
>gi|315639362|ref|ZP_07894524.1| crossover junction endoribonuclease subunit C [Campylobacter
upsaliensis JV21]
gi|315480688|gb|EFU71330.1| crossover junction endoribonuclease subunit C [Campylobacter
upsaliensis JV21]
Length = 159
Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats.
Identities = 51/156 (32%), Positives = 78/156 (50%), Gaps = 2/156 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
++I+GIDPG R G+ I++V + +G I L +++ +L EGL + K+
Sbjct: 1 MKILGIDPGSRFCGYAILEVIKGKNTLIEAGLIKIKPST-LQYQITELCEGLDLIFKHHH 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
+E A+E +F + + LKL Q R L +EY P IKK + G K+
Sbjct: 60 FDEVAIEDIFFAYNPQSVLKLAQFRGALSLKILQLHGEFAEYTPLQIKKTITGKAKASKE 119
Query: 125 QIHMMLKMLMPESF-FKGKDAADALAIAVCHAYHAN 159
Q+ M+K L+ S K D DA+AIA+ HA H
Sbjct: 120 QVAFMVKRLLGISKDIKPLDITDAIAIALTHAAHLR 155
>gi|301168495|emb|CBW28085.1| putative crossover Holliday junction endodeoxyribonuclease RuvC
[Bacteriovorax marinus SJ]
Length = 179
Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats.
Identities = 52/151 (34%), Positives = 87/151 (57%), Gaps = 1/151 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
++I+GIDPG R+ GW +++ G +++SG + + RL +++ + ++I+ +R
Sbjct: 1 MKILGIDPGSRKAGWALIEKEGRKTTYLASGVLKYDKIDNFLDRLGVIHQSICELIEEYR 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPA-LARIPVSEYAPNTIKKAVIGVGHGDK 123
P+E A+E + K+ + KL QAR + + + V EY+P IK++V G GH DK
Sbjct: 61 PDEVALESLIFVKNVNSLAKLAQARGAMLAAIIPSYQGSVFEYSPTLIKQSVSGYGHADK 120
Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCH 154
I L M+ + FK D +DALAIA+CH
Sbjct: 121 AAIEKTLGMIFGKIEFKTNDESDALAIALCH 151
>gi|319941757|ref|ZP_08016079.1| crossover junction endodeoxyribonuclease RuvC [Sutterella
wadsworthensis 3_1_45B]
gi|319804690|gb|EFW01557.1| crossover junction endodeoxyribonuclease RuvC [Sutterella
wadsworthensis 3_1_45B]
Length = 201
Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats.
Identities = 66/153 (43%), Positives = 90/153 (58%), Gaps = 1/153 (0%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M ++RI+G+DPGL TGWGI+D G +V+SG ++ A RL + + VI
Sbjct: 1 MAAAVRILGLDPGLNHTGWGIIDTTGAKSIWVASGVFDIPKGET-AARLAHIAREIEAVI 59
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
K P AA E+VFVN + +TL LG AR AI + +LA + V E+ P+ IK+AV G G
Sbjct: 60 KTHLPTVAACERVFVNVNPQSTLLLGHARGAAICAASLAGLAVEEFTPSEIKQAVTGSGS 119
Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVC 153
DKK I M++ L+P D ADALA A+C
Sbjct: 120 ADKKMIQAMVERLLPIPHHPRTDEADALACALC 152
>gi|307722079|ref|YP_003893219.1| crossover junction endodeoxyribonuclease RuvC [Sulfurimonas
autotrophica DSM 16294]
gi|306980172|gb|ADN10207.1| crossover junction endodeoxyribonuclease RuvC [Sulfurimonas
autotrophica DSM 16294]
Length = 158
Score = 155 bits (391), Expect = 2e-36, Method: Composition-based stats.
Identities = 45/154 (29%), Positives = 79/154 (51%), Gaps = 2/154 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ I+GIDPG R G+ ++ + + + +G I + L F++ Q+ EGL+ + +N
Sbjct: 1 MTILGIDPGTRNMGYALISLQNGKISLIEAGLIKM-KAEDLQFQIPQMVEGLSRIFENHT 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
+E A+E +F + T+KL Q R +L EY +KKA+ G K+
Sbjct: 60 IDEVAMEDIFYAHNPATTIKLAQFRGAIMLKLLQEFGQFHEYTALQVKKALTGKAKAQKE 119
Query: 125 QIHMMLKMLMP-ESFFKGKDAADALAIAVCHAYH 157
Q+ M+K L+ + K D +DA+A+A+ H+
Sbjct: 120 QVAFMVKRLLNIKKEIKPLDISDAMAVAITHSQR 153
>gi|57236914|ref|YP_179867.1| Holliday junction resolvase [Campylobacter jejuni RM1221]
gi|73621850|sp|Q5HS68|RUVC_CAMJR RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|57165718|gb|AAW34497.1| crossover junction endodeoxyribonuclease RuvC [Campylobacter jejuni
RM1221]
gi|284926914|gb|ADC29266.1| crossover junction endodeoxyribonuclease [Campylobacter jejuni
subsp. jejuni IA3902]
Length = 160
Score = 155 bits (391), Expect = 3e-36, Method: Composition-based stats.
Identities = 50/153 (32%), Positives = 77/153 (50%), Gaps = 2/153 (1%)
Query: 4 SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+++I+GIDPG R G+ I++ + +G I L +++ +L EGL + KN
Sbjct: 2 NLKILGIDPGSRNCGYAIIEANKGKNILIEAGLIKIKPST-LQYQITELCEGLDLIFKNH 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
+E A+E +F + LKL Q R L +EY P +KKAV G K
Sbjct: 61 SFDEVAIEDIFFAYNPKTVLKLAQFRGALSLKILQIHGDFAEYTPLQVKKAVTGKAKATK 120
Query: 124 KQIHMMLKMLMPESF-FKGKDAADALAIAVCHA 155
+Q+ M+K L+ S K D DA+A+A+ HA
Sbjct: 121 EQVAFMVKRLLGLSKDIKPLDITDAIAVALTHA 153
>gi|283956178|ref|ZP_06373663.1| crossover junction endodeoxyribonuclease RuvC [Campylobacter jejuni
subsp. jejuni 1336]
gi|283792332|gb|EFC31116.1| crossover junction endodeoxyribonuclease RuvC [Campylobacter jejuni
subsp. jejuni 1336]
Length = 158
Score = 155 bits (391), Expect = 3e-36, Method: Composition-based stats.
Identities = 49/152 (32%), Positives = 77/152 (50%), Gaps = 2/152 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
++I+GIDPG + G+ I++ + + +G I L +++ +L EGL + KN
Sbjct: 1 MKILGIDPGSKNCGYAIIEASKGKNILIEAGLIKIKPST-LQYQITELCEGLDLIFKNHS 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
+E A+E +F + LKL Q R L +EY P +KKAV G K+
Sbjct: 60 FDEVAIEDIFFAYNPKTVLKLAQFRGALSLKILQIHGDFAEYTPLQVKKAVTGKAKATKE 119
Query: 125 QIHMMLKMLMPESF-FKGKDAADALAIAVCHA 155
Q+ M+K L+ S K D DA+A+A+ HA
Sbjct: 120 QVAFMVKRLLGLSKDIKPLDITDAIAVALTHA 151
>gi|68171947|ref|ZP_00545259.1| Crossover junction endodeoxyribonuclease RuvC [Ehrlichia
chaffeensis str. Sapulpa]
gi|88658422|ref|YP_506861.1| crossover junction endodeoxyribonuclease RuvC [Ehrlichia
chaffeensis str. Arkansas]
gi|123736421|sp|Q2GI72|RUVC_EHRCR RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|67998626|gb|EAM85367.1| Crossover junction endodeoxyribonuclease RuvC [Ehrlichia
chaffeensis str. Sapulpa]
gi|88599879|gb|ABD45348.1| crossover junction endodeoxyribonuclease RuvC [Ehrlichia
chaffeensis str. Arkansas]
Length = 156
Score = 155 bits (391), Expect = 3e-36, Method: Composition-based stats.
Identities = 51/156 (32%), Positives = 100/156 (64%), Gaps = 1/156 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
++I+G+DPGL TGW I+ V+ D + + GT+V+ ++ RL +++ + D+++ ++
Sbjct: 1 MKIMGLDPGLNCTGWSILSVSKD-IKLIDKGTVVTNSKEDTGQRLRKIHTDVLDILRLYQ 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
+ A++E++F+NK+ +++ L AR I +L+ + IPV EY+ N +KK++ G GH K+
Sbjct: 60 VDSASMEEIFINKNPKSSISLCYARGILLLTLSTKDIPVFEYSTNYVKKSITGNGHAKKE 119
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
Q+ M++ ++ D +D++A+A+CHAY S
Sbjct: 120 QVSFMIEKILNVKCSGTYDISDSIAVALCHAYSKKS 155
>gi|330996975|ref|ZP_08320840.1| crossover junction endodeoxyribonuclease RuvC [Paraprevotella
xylaniphila YIT 11841]
gi|329572049|gb|EGG53720.1| crossover junction endodeoxyribonuclease RuvC [Paraprevotella
xylaniphila YIT 11841]
Length = 192
Score = 155 bits (391), Expect = 3e-36, Method: Composition-based stats.
Identities = 52/157 (33%), Positives = 82/157 (52%), Gaps = 3/157 (1%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG G+G++ V G+ + G I +L +++E +T +I+++ P
Sbjct: 10 IILGIDPGTNLMGYGVLRVTGNKAVMETMGIIDLRKYTGPYLKLGRIFERVTGIIESYLP 69
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+E A+E F K+ + LKLG+A+ +AI + IP++EYAP IK A+ G G K+Q
Sbjct: 70 DEMAIEAPFFGKNVQSMLKLGRAQGVAIAAAIHRDIPITEYAPLKIKMAITGNGQASKEQ 129
Query: 126 IHMMLKMLMPESF---FKGKDAADALAIAVCHAYHAN 159
+ ML ++ DA D LA A CH
Sbjct: 130 VAGMLTRMLHIREEDMLPYMDATDGLAAAYCHFLQMG 166
>gi|228471068|ref|ZP_04055903.1| crossover junction endodeoxyribonuclease RuvC [Porphyromonas
uenonis 60-3]
gi|313886912|ref|ZP_07820615.1| crossover junction endodeoxyribonuclease RuvC [Porphyromonas
asaccharolytica PR426713P-I]
gi|332300798|ref|YP_004442719.1| crossover junction endodeoxyribonuclease RuvC [Porphyromonas
asaccharolytica DSM 20707]
gi|228307190|gb|EEK16227.1| crossover junction endodeoxyribonuclease RuvC [Porphyromonas
uenonis 60-3]
gi|312923609|gb|EFR34415.1| crossover junction endodeoxyribonuclease RuvC [Porphyromonas
asaccharolytica PR426713P-I]
gi|332177861|gb|AEE13551.1| crossover junction endodeoxyribonuclease RuvC [Porphyromonas
asaccharolytica DSM 20707]
Length = 192
Score = 155 bits (391), Expect = 3e-36, Method: Composition-based stats.
Identities = 53/169 (31%), Positives = 90/169 (53%), Gaps = 6/169 (3%)
Query: 1 MRKSI--RII-GIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLT 57
M KS RI+ GIDPG G+G++ V G + ++ G I + RL ++Y+ +
Sbjct: 1 MSKSRGERILIGIDPGTIVMGYGLLSVRGQHAEMLTMGVIELSRYEDHYTRLGRIYKRVA 60
Query: 58 DVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIG 117
+I + P+E A+E F K+ + LKLG+A+ +A+ + IP++EY P +K+A+ G
Sbjct: 61 GLIDEFLPDEMALEAPFYGKNVQSMLKLGRAQGVAMAAALSRDIPIAEYVPMRVKQAITG 120
Query: 118 VGHGDKKQIHMMLKMLMPES---FFKGKDAADALAIAVCHAYHANSGYY 163
G K+Q+ ML+ ++ + DA D LA+A CH ++
Sbjct: 121 TGQASKEQVATMLQRVLRIPAELMPEKLDATDGLAVAYCHFLQTSNAVA 169
>gi|126174262|ref|YP_001050411.1| Holliday junction resolvase [Shewanella baltica OS155]
gi|153000825|ref|YP_001366506.1| Holliday junction resolvase [Shewanella baltica OS185]
gi|160875533|ref|YP_001554849.1| Holliday junction resolvase [Shewanella baltica OS195]
gi|217973218|ref|YP_002357969.1| Holliday junction resolvase [Shewanella baltica OS223]
gi|304408865|ref|ZP_07390486.1| crossover junction endodeoxyribonuclease RuvC [Shewanella baltica
OS183]
gi|307302868|ref|ZP_07582623.1| crossover junction endodeoxyribonuclease RuvC [Shewanella baltica
BA175]
gi|166233297|sp|A3D479|RUVC_SHEB5 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|166233298|sp|A6WNQ4|RUVC_SHEB8 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|189046079|sp|A9L3H9|RUVC_SHEB9 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|254767485|sp|B8EA73|RUVC_SHEB2 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|125997467|gb|ABN61542.1| crossover junction endodeoxyribonuclease RuvC [Shewanella baltica
OS155]
gi|151365443|gb|ABS08443.1| crossover junction endodeoxyribonuclease RuvC [Shewanella baltica
OS185]
gi|160861055|gb|ABX49589.1| crossover junction endodeoxyribonuclease RuvC [Shewanella baltica
OS195]
gi|217498353|gb|ACK46546.1| crossover junction endodeoxyribonuclease RuvC [Shewanella baltica
OS223]
gi|304352686|gb|EFM17083.1| crossover junction endodeoxyribonuclease RuvC [Shewanella baltica
OS183]
gi|306913228|gb|EFN43650.1| crossover junction endodeoxyribonuclease RuvC [Shewanella baltica
BA175]
gi|315267721|gb|ADT94574.1| crossover junction endodeoxyribonuclease RuvC [Shewanella baltica
OS678]
Length = 173
Score = 155 bits (391), Expect = 3e-36, Method: Composition-based stats.
Identities = 63/155 (40%), Positives = 102/155 (65%), Gaps = 1/155 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+G+DPG R TG+G++ G + ++ SG I + + L RL Q+++G+T++I+ ++P
Sbjct: 3 IILGVDPGSRITGYGVIQCQGRHQIYLGSGCIRTSSEE-LPGRLKQIFDGITEIIRQYQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+E A+E+VF+ K+A + LKLGQAR AI++ +A +PV+EY+ IK AV+G G K Q
Sbjct: 62 DEFAIERVFMAKNADSALKLGQARGAAIVAATVANLPVAEYSATQIKSAVVGTGRAQKAQ 121
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
+ M++ L+ DAADAL +AVCH + + S
Sbjct: 122 VQHMIQQLLKLPAAPQADAADALGVAVCHYHTSQS 156
>gi|57506230|ref|ZP_00372149.1| crossover junction endodeoxyribonuclease RuvC [Campylobacter
upsaliensis RM3195]
gi|57015498|gb|EAL52293.1| crossover junction endodeoxyribonuclease RuvC [Campylobacter
upsaliensis RM3195]
Length = 159
Score = 155 bits (391), Expect = 3e-36, Method: Composition-based stats.
Identities = 51/156 (32%), Positives = 79/156 (50%), Gaps = 2/156 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
++I+GIDPG R G+ I++V + +G I L +++ +L EGL + K+
Sbjct: 1 MKILGIDPGSRFCGYAILEVIKGKNILIEAGLIKIKPST-LQYQITELCEGLDLIFKHHH 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
+E A+E +F + + LKL Q R L +EY+P IKK + G K+
Sbjct: 60 FDEVAIEDIFFAYNPQSVLKLAQFRGALSLKILQLHGEFAEYSPLQIKKTITGKAKASKE 119
Query: 125 QIHMMLKMLMPESF-FKGKDAADALAIAVCHAYHAN 159
Q+ M+K L+ S K D DA+AIA+ HA H
Sbjct: 120 QVAFMVKRLLGISKDIKPLDITDAIAIALTHAAHLR 155
>gi|260889010|ref|ZP_05900273.1| crossover junction endodeoxyribonuclease RuvC [Leptotrichia
hofstadii F0254]
gi|260861070|gb|EEX75570.1| crossover junction endodeoxyribonuclease RuvC [Leptotrichia
hofstadii F0254]
Length = 189
Score = 154 bits (390), Expect = 3e-36, Method: Composition-based stats.
Identities = 41/136 (30%), Positives = 73/136 (53%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+G+DPG G+ IVD + G I + + + RL ++Y+GL ++IK W+
Sbjct: 1 MRILGVDPGTAIVGYAIVDYENGKYVPLDYGCIFTDKDEDMPVRLEKIYDGLENIIKLWK 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P + A+E +F K+ +K+GQAR + L+ ++ + Y P +K + G +KK
Sbjct: 61 PTDMAIEDLFFFKNQKTVIKVGQARGVITLAGQKNKLNLYSYTPLQVKMGIASYGRAEKK 120
Query: 125 QIHMMLKMLMPESFFK 140
QI M+K+++
Sbjct: 121 QIQEMVKLILKLEEIP 136
>gi|255994630|ref|ZP_05427765.1| crossover junction endodeoxyribonuclease RuvC [Eubacterium saphenum
ATCC 49989]
gi|255993343|gb|EEU03432.1| crossover junction endodeoxyribonuclease RuvC [Eubacterium saphenum
ATCC 49989]
Length = 159
Score = 154 bits (390), Expect = 3e-36, Method: Composition-based stats.
Identities = 55/156 (35%), Positives = 94/156 (60%), Gaps = 1/156 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPG G+G++D G++ V G I + + L RL ++ L+ +++ +R
Sbjct: 1 MRILGIDPGYAIMGYGLIDKIGNSFKPVDYGVIKTKAGEPLPERLLKIRMELSSIVEKYR 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+E AVE++F N ++ + + ++R +A++ A+ I V+EY P +K+ V+G G K
Sbjct: 61 PDEMAVEELFFNTNSKTVIHVAESRGVALVEGAVRGINVNEYTPLQVKQGVVGYGRAQKV 120
Query: 125 QIHMMLKMLMPESF-FKGKDAADALAIAVCHAYHAN 159
Q+ M+K+L+ K DAADALA+A+CHA
Sbjct: 121 QVMQMVKVLLNLESVPKPDDAADALAVAICHANSGR 156
>gi|256831251|ref|YP_003159979.1| crossover junction endodeoxyribonuclease RuvC [Desulfomicrobium
baculatum DSM 4028]
gi|256580427|gb|ACU91563.1| crossover junction endodeoxyribonuclease RuvC [Desulfomicrobium
baculatum DSM 4028]
Length = 173
Score = 154 bits (390), Expect = 3e-36, Method: Composition-based stats.
Identities = 52/169 (30%), Positives = 88/169 (52%), Gaps = 1/169 (0%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M I+G+DPG R G+G+V L V +G + ++++ RL +Y +++++
Sbjct: 1 MAMERIILGVDPGSRCMGYGLVRERSGVLSLVEAGVVR-PGEEAMSARLGLMYTRISELL 59
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
P AVE VF +++ + LKLGQAR + + + V Y P +KK+++G G
Sbjct: 60 HAHSPHAVAVENVFFARNSASALKLGQARGAVLAACGVHGAEVFGYEPTLVKKSLVGAGR 119
Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQD 169
+K Q+ M+ L+ +DA DALA+A+CH H+ A Q+
Sbjct: 120 AEKSQVSFMVGQLLGVKPDWAEDAGDALALAICHLNHSRFLAAVAAGQN 168
>gi|205355741|ref|ZP_03222511.1| crossover junction endodeoxyribonuclease [Campylobacter jejuni
subsp. jejuni CG8421]
gi|205346518|gb|EDZ33151.1| crossover junction endodeoxyribonuclease [Campylobacter jejuni
subsp. jejuni CG8421]
Length = 184
Score = 154 bits (390), Expect = 3e-36, Method: Composition-based stats.
Identities = 50/153 (32%), Positives = 78/153 (50%), Gaps = 2/153 (1%)
Query: 4 SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+++I+GIDPG R G+ I++ + +G I +L +++ +L EGL + KN
Sbjct: 26 NLKILGIDPGSRNCGYAIIEANKGKNILMEAGLIK-IKLSTLQYQITELCEGLDLIFKNH 84
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
+E A+E +F + LKL Q R L +EY P +KKAV G K
Sbjct: 85 SFDEVAIEDIFFAYNPKTVLKLAQFRGALSLKILQIHGDFAEYTPLQVKKAVTGKAKATK 144
Query: 124 KQIHMMLKMLMPESF-FKGKDAADALAIAVCHA 155
+Q+ M+K L+ S K D DA+A+A+ HA
Sbjct: 145 EQVAFMVKRLLGLSKDIKPLDITDAIAVALTHA 177
>gi|291296389|ref|YP_003507787.1| crossover junction endodeoxyribonuclease RuvC [Meiothermus ruber
DSM 1279]
gi|290471348|gb|ADD28767.1| crossover junction endodeoxyribonuclease RuvC [Meiothermus ruber
DSM 1279]
Length = 164
Score = 154 bits (390), Expect = 3e-36, Method: Composition-based stats.
Identities = 47/154 (30%), Positives = 78/154 (50%), Gaps = 1/154 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ ++GIDPG+ G G+V+ AG + + + + ++ R+ +LY + V +R
Sbjct: 1 MIVLGIDPGITNLGIGVVEQAGKQTRMLHAEVVKTTHGETAPERVGKLYRAVYQVAAAYR 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ AVE+ F + K+G A L IPV Y P +K+A++G G DK
Sbjct: 61 PQAIAVEEQFFYRQNELAYKVGWAMGAVFLVADQLEIPVYGYGPPKVKQALVGTGQADKH 120
Query: 125 QIHMMLKMLMPESF-FKGKDAADALAIAVCHAYH 157
Q+ M++ L+ K ADALAIA+ H ++
Sbjct: 121 QVAYMVRALLGLKSLPKPTHLADALAIALTHCFY 154
>gi|302344656|ref|YP_003809185.1| crossover junction endodeoxyribonuclease RuvC [Desulfarculus
baarsii DSM 2075]
gi|301641269|gb|ADK86591.1| crossover junction endodeoxyribonuclease RuvC [Desulfarculus
baarsii DSM 2075]
Length = 168
Score = 154 bits (390), Expect = 3e-36, Method: Composition-based stats.
Identities = 61/154 (39%), Positives = 98/154 (63%), Gaps = 1/154 (0%)
Query: 2 RKSIRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
+R++G+DPG +RTG+G+V FV++G I + + +RL ++++ L VI
Sbjct: 3 TAPVRVLGLDPGSQRTGYGLVQAGPRGRAVFVAAGVISAPASLAPPWRLRKIHQELCQVI 62
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
+ +P E AVE VF ++A + LGQAR +A+L+ A A + V EY+P +KKA+ GVG
Sbjct: 63 ERRQPLEMAVEGVFAAQNARTAIMLGQARGVALLAAAQAGLEVFEYSPAAVKKALTGVGR 122
Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCH 154
DK+Q+ M+++++ G DA+DALAIA+CH
Sbjct: 123 ADKEQVQRMVRVVLGVEEPLGLDASDALAIAICH 156
>gi|78778298|ref|YP_394613.1| Holliday junction resolvase [Sulfurimonas denitrificans DSM 1251]
gi|123549501|sp|Q30NQ3|RUVC_SULDN RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|78498838|gb|ABB45378.1| Crossover junction endodeoxyribonuclease RuvC [Sulfurimonas
denitrificans DSM 1251]
Length = 159
Score = 154 bits (390), Expect = 3e-36, Method: Composition-based stats.
Identities = 46/154 (29%), Positives = 78/154 (50%), Gaps = 2/154 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ I+GIDPG R+ G+ ++ + + + +G I + L F++ Q+ E + KN +
Sbjct: 1 MTILGIDPGTRKMGYALISLEKGKIALIEAGLIK-IKAEELQFQIPQMVEAFEGIFKNHK 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
+E A+E +F + T+KL Q R +L SEY +KKA+ G G K+
Sbjct: 60 IDEVAIEDIFYAHNPKTTIKLAQFRGAIMLMLIQQFGQFSEYTALQVKKALTGNGKATKE 119
Query: 125 QIHMMLKMLMP-ESFFKGKDAADALAIAVCHAYH 157
Q+ M K L+ + K D DA+A+A+ H+
Sbjct: 120 QVAFMAKRLLNIKKEIKPLDITDAIAVAITHSQR 153
>gi|303258187|ref|ZP_07344194.1| crossover junction endodeoxyribonuclease RuvC [Burkholderiales
bacterium 1_1_47]
gi|302858940|gb|EFL82024.1| crossover junction endodeoxyribonuclease RuvC [Burkholderiales
bacterium 1_1_47]
Length = 201
Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats.
Identities = 52/153 (33%), Positives = 88/153 (57%), Gaps = 2/153 (1%)
Query: 2 RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
+K++RI+GIDPGL TG+G+VD + +V+SG + + L+ RL +++ L+ +I+
Sbjct: 3 QKAVRILGIDPGLNHTGYGLVDFVPGHFTYVASGVLNVPAGE-LSDRLGFIFKSLSALIE 61
Query: 62 NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
P A++E+ F+N +A +++ L AR A+ + A I E + IKK+V G G
Sbjct: 62 EHHPNVASIEKTFLNTNAQSSMLLSHARGAAMCAVACHSILCKEISTREIKKSVTGYGAA 121
Query: 122 DKKQIHMMLKMLMPESFFK-GKDAADALAIAVC 153
DK Q+ M+ + + D +DALA A+C
Sbjct: 122 DKDQVQQMVLRHLKLEDTRFSPDESDALATAIC 154
>gi|46445653|ref|YP_007018.1| Holliday junction resolvase [Candidatus Protochlamydia amoebophila
UWE25]
gi|81627840|sp|Q6MFA6|RUVC_PARUW RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|46399294|emb|CAF22743.1| probable Holliday junction endodeoxyribonuclease [Candidatus
Protochlamydia amoebophila UWE25]
Length = 168
Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats.
Identities = 43/142 (30%), Positives = 73/142 (51%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M + I+G+DPG + TG+G++ + G V G I L+ R + +G+ +I
Sbjct: 1 MSNQVIILGLDPGTKITGFGVIRIEGHQYVPVDYGCIRPPSHYKLSERYLVICQGVEQLI 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
+P VE +V+K+ + +KLG AR + +++ IP+ EYAP+ K AV+G G
Sbjct: 61 DQHQPHAVVVETQYVSKNVQSAMKLGMARGVIMIAAKKRGIPIYEYAPSKAKLAVVGTGR 120
Query: 121 GDKKQIHMMLKMLMPESFFKGK 142
K Q+ M++ L+ S
Sbjct: 121 ASKYQVQGMVQRLLNLSIPPTP 142
>gi|320093779|ref|ZP_08025626.1| crossover junction endoribonuclease subunit C [Actinomyces sp. oral
taxon 178 str. F0338]
gi|319979280|gb|EFW10776.1| crossover junction endoribonuclease subunit C [Actinomyces sp. oral
taxon 178 str. F0338]
Length = 209
Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats.
Identities = 51/156 (32%), Positives = 81/156 (51%), Gaps = 2/156 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R++GIDPGL R G G++DV V G S + FRL + + + VI+
Sbjct: 1 MRVMGIDPGLTRCGLGVIDVDPSRRATLVHVGVARSDKDLATHFRLTAIADAIDAVIERH 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
RPE A+E+VF + + Q A+ A +P++ + P+ +K AV G G+ K
Sbjct: 61 RPEVVAIERVFAQDNLQSVTTTMQVMGAAMACVGRAGLPLAVHTPSEVKSAVSGNGNAGK 120
Query: 124 KQIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHA 158
Q+ M+ ++ + DAAD+LAIA+CHA+
Sbjct: 121 AQVQTMVARILGLAEAPRPADAADSLAIAICHAWRG 156
>gi|57238746|ref|YP_179882.1| crossover junction endodeoxyribonuclease RuvC [Ehrlichia
ruminantium str. Welgevonden]
gi|58578667|ref|YP_196879.1| crossover junction endodeoxyribonuclease RuvC [Ehrlichia
ruminantium str. Welgevonden]
gi|81557368|sp|Q5HCG1|RUVC_EHRRW RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|57160825|emb|CAH57723.1| crossover junction endodeoxyribonuclease RuvC [Ehrlichia
ruminantium str. Welgevonden]
gi|58417293|emb|CAI26497.1| Crossover junction endodeoxyribonuclease RuvC [Ehrlichia
ruminantium str. Welgevonden]
Length = 160
Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats.
Identities = 51/156 (32%), Positives = 99/156 (63%), Gaps = 3/156 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDN---LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
+ IIGIDP L TGW I+ V +N + V +G+I++ ++++ RL ++Y L +++
Sbjct: 1 MNIIGIDPSLNSTGWAILSVHDNNYNEIRLVDNGSILTSNKKTIGERLNKIYSELLNILN 60
Query: 62 NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
+++ + A++E++F+NK+ ++ L AR + +L+ +A IP+ EY+ N +KK++ G GH
Sbjct: 61 SYKVDTASMEEIFINKNPKSSTLLCYARGVLLLTLNVACIPLFEYSANRVKKSITGNGHA 120
Query: 122 DKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYH 157
K+Q+ M++ ++ D +DA+A+A+CH Y
Sbjct: 121 KKEQVCFMIENILNIKCHGTYDISDAIAVAICHIYS 156
>gi|255035791|ref|YP_003086412.1| crossover junction endodeoxyribonuclease RuvC [Dyadobacter
fermentans DSM 18053]
gi|254948547|gb|ACT93247.1| crossover junction endodeoxyribonuclease RuvC [Dyadobacter
fermentans DSM 18053]
Length = 174
Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats.
Identities = 51/148 (34%), Positives = 87/148 (58%), Gaps = 1/148 (0%)
Query: 17 TGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVN 76
G+G++ V G + V G I + +L +++E LT +I+++ P+E A+E F
Sbjct: 1 MGYGVISVKGQQISLVQYGVIHLSKYSTHELKLKKIFERLTQLIEDYLPDEMAIEDPFYG 60
Query: 77 KDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPE 136
K+A + LKLG+A+ +A+ + IP+ EY+P +K++V G G+ K+Q+ ML+ ++
Sbjct: 61 KNAQSMLKLGRAQGVAMAAALARNIPIVEYSPKKVKQSVTGSGNASKEQVAYMLEKILKM 120
Query: 137 SFFK-GKDAADALAIAVCHAYHANSGYY 163
+ DA D +AIA+CH YHANS
Sbjct: 121 ELSREFMDATDGIAIAICHQYHANSPAS 148
>gi|209886414|ref|YP_002290271.1| crossover junction endodeoxyribonuclease RuvC [Oligotropha
carboxidovorans OM5]
gi|226698761|sp|B6JIZ7|RUVC_OLICO RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|209874610|gb|ACI94406.1| crossover junction endodeoxyribonuclease RuvC [Oligotropha
carboxidovorans OM5]
Length = 171
Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats.
Identities = 93/169 (55%), Positives = 122/169 (72%), Gaps = 2/169 (1%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
+ ++IRI+GIDPGLRRTGWG++DV G+ L FV+ GT+ S L+ RL ++EGL V+
Sbjct: 2 ISRTIRILGIDPGLRRTGWGVIDVEGNRLIFVACGTVESRESLPLSERLLAIHEGLVRVV 61
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
RP EAAVEQ FVNKD TLKLGQAR +A+L PA++ I V+EYAPN +KK V+G GH
Sbjct: 62 SEHRPLEAAVEQTFVNKDGAGTLKLGQARGVAMLVPAMSGISVAEYAPNLVKKTVVGAGH 121
Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYY--KIAS 167
DK QI +MLK+L+P++ DAADALAIA+ HA+H S K+A+
Sbjct: 122 ADKNQIQVMLKILLPKAAPPTPDAADALAIAITHAHHRQSAMLLRKVAA 170
>gi|167006264|ref|ZP_02272022.1| Holliday junction resolvase [Campylobacter jejuni subsp. jejuni
81-176]
Length = 158
Score = 154 bits (389), Expect = 4e-36, Method: Composition-based stats.
Identities = 50/152 (32%), Positives = 76/152 (50%), Gaps = 2/152 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
++I+GIDPG R G+ I++ + +G I L +++ +L EGL + KN
Sbjct: 1 MKILGIDPGSRNCGYAIMEANKGKNILIEAGLIKIKPST-LQYQITELCEGLDLIFKNHS 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
+E A+E +F + LKL Q R L +EY P +KKAV G K+
Sbjct: 60 FDEVAIEDIFFAYNPKTVLKLAQFRGALSLKILQIHGDFAEYTPLQVKKAVTGKAKATKE 119
Query: 125 QIHMMLKMLMPESF-FKGKDAADALAIAVCHA 155
Q+ M+K L+ S K D DA+A+A+ HA
Sbjct: 120 QVAFMVKRLLGLSKDIKPLDITDAIAVALTHA 151
>gi|315604285|ref|ZP_07879351.1| crossover junction endoribonuclease subunit C [Actinomyces sp. oral
taxon 180 str. F0310]
gi|315313991|gb|EFU62042.1| crossover junction endoribonuclease subunit C [Actinomyces sp. oral
taxon 180 str. F0310]
Length = 209
Score = 154 bits (389), Expect = 5e-36, Method: Composition-based stats.
Identities = 51/156 (32%), Positives = 81/156 (51%), Gaps = 2/156 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R++GIDPGL R G G++DV V G S + FRL + + + VI+ +
Sbjct: 1 MRVMGIDPGLTRCGLGVIDVDPSRRATLVYVGVARSDKDLATHFRLRTIADAIDGVIERY 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
PE A+E+VF + + Q A+ A +P++ + P+ +K AV G G+ DK
Sbjct: 61 APEVVAIERVFAQDNLQSVTTTMQVMGAAMTCVGRAGLPMAVHTPSEVKSAVSGNGNADK 120
Query: 124 KQIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHA 158
Q+ M+ ++ K DAAD+LAIA+ HA+
Sbjct: 121 AQVQTMVARILGLVKAPKPADAADSLAIAITHAWRG 156
>gi|168700080|ref|ZP_02732357.1| crossover junction endodeoxyribonuclease ruvC [Gemmata
obscuriglobus UQM 2246]
Length = 211
Score = 154 bits (389), Expect = 5e-36, Method: Composition-based stats.
Identities = 58/165 (35%), Positives = 93/165 (56%), Gaps = 5/165 (3%)
Query: 4 SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQ---SLAFRLCQLYEGLTDVI 60
RI+GIDPGL+ TG+G+++V+ V +G I S + +A R+ LY+GL++V+
Sbjct: 11 PRRILGIDPGLQTTGYGVLEVSDKGPRVVDAGVIRSADGRDSSDMARRVKALYDGLSEVL 70
Query: 61 KNWRPEEAAVEQVFVNKDA-VATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVG 119
W+P A+EQ++ + D + + AR + +L+ A IPV+ YAP +KK V G G
Sbjct: 71 GEWKPAALAIEQLYAHYDHPRTAILMAHARGVYLLAAAQHSIPVTSYAPTKVKKLVTGHG 130
Query: 120 HGDKKQIHMMLKMLMPESF-FKGKDAADALAIAVCHAYHANSGYY 163
H K+Q+ + + + + D ADAL IA+CH + SG
Sbjct: 131 HAVKEQMQYAVMRELNLAKLPEPHDVADALGIALCHYFATGSGVM 175
>gi|189346019|ref|YP_001942548.1| crossover junction endodeoxyribonuclease RuvC [Chlorobium limicola
DSM 245]
gi|238692189|sp|B3EG36|RUVC_CHLL2 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|189340166|gb|ACD89569.1| crossover junction endodeoxyribonuclease RuvC [Chlorobium limicola
DSM 245]
Length = 190
Score = 154 bits (389), Expect = 5e-36, Method: Composition-based stats.
Identities = 52/150 (34%), Positives = 79/150 (52%), Gaps = 1/150 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ ++G+DPG TG+G++ + G I R+S R+ ++Y L VI +
Sbjct: 1 MVVLGVDPGSLHTGYGVIRYDNAGFHLLGCGVIRLHRRKSYFERIGEIYRELDSVIGGYA 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P A+E VF+NK+ + LKLGQ R I R+ +SEYAP +K AV G G K+
Sbjct: 61 PVRLALETVFLNKNVQSALKLGQVRGAVIALAMNHRLELSEYAPREVKAAVTGRGAASKE 120
Query: 125 QIHMMLKMLMPES-FFKGKDAADALAIAVC 153
Q+ M+ ++ + D DALAIA+C
Sbjct: 121 QVAFMVTRMLKITGNPATHDVTDALAIALC 150
>gi|157165401|ref|YP_001467853.1| Holliday junction resolvase [Campylobacter concisus 13826]
gi|166231591|sp|A7ZGE5|RUVC_CAMC1 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|112801768|gb|EAT99112.1| crossover junction endodeoxyribonuclease RuvC [Campylobacter
concisus 13826]
Length = 157
Score = 154 bits (389), Expect = 5e-36, Method: Composition-based stats.
Identities = 48/156 (30%), Positives = 78/156 (50%), Gaps = 2/156 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
++I+GIDPG + G+ I++ + + +G I L +++ +L EGL + KN +
Sbjct: 1 MKILGIDPGTKNCGYAILEKSKFKTILLEAGLIKIKPNT-LQYQITELCEGLDLIFKNHK 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
+E A+E +F + LKL Q R L +EY P +KK V G DK+
Sbjct: 60 FDEVAIEDIFFAYNPKTVLKLAQFRGALSLKILQLHGDFAEYTPLQVKKTVTGKAKADKE 119
Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHAN 159
Q+ M+K ++ K D DA+AIA+ HA +
Sbjct: 120 QVAFMVKKILGINKEIKPLDITDAIAIALTHANNLR 155
>gi|153864403|ref|ZP_01997317.1| crossover junction endodeoxyribonuclease RuvC [Beggiatoa sp. SS]
gi|152146103|gb|EDN72684.1| crossover junction endodeoxyribonuclease RuvC [Beggiatoa sp. SS]
Length = 158
Score = 154 bits (389), Expect = 5e-36, Method: Composition-based stats.
Identities = 70/153 (45%), Positives = 103/153 (67%), Gaps = 1/153 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
RI+GIDPG R TG+GI+D +V+SG I + + + RL ++Y GL ++I+ ++P
Sbjct: 4 RILGIDPGSRITGFGIIDGLRQKSVYVTSGCIRTQSKL-MPQRLQEIYTGLNEIIEQYQP 62
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+A+EQVFV+++ + LKLGQAR +AIL+ + V EYAP IK+AV+G GH DK Q
Sbjct: 63 TISAIEQVFVHRNVASALKLGQARGVAILACVQHNLTVHEYAPTQIKQAVVGNGHADKIQ 122
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHA 158
+ M+K+L+ S DAAD LA A+CHA+H+
Sbjct: 123 VQQMVKILLSLSNTPQVDAADGLAAALCHAHHS 155
>gi|257470233|ref|ZP_05634324.1| crossover junction endodeoxyribonuclease ruvC [Fusobacterium
ulcerans ATCC 49185]
gi|317064447|ref|ZP_07928932.1| crossover junction endodeoxyribonuclease ruvC [Fusobacterium
ulcerans ATCC 49185]
gi|313690123|gb|EFS26958.1| crossover junction endodeoxyribonuclease ruvC [Fusobacterium
ulcerans ATCC 49185]
Length = 190
Score = 153 bits (388), Expect = 5e-36, Method: Composition-based stats.
Identities = 42/138 (30%), Positives = 72/138 (52%), Gaps = 1/138 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+R++GIDPG G+G++D V G + + RLCQ+YE L D+IK +
Sbjct: 1 MRVLGIDPGTAIVGFGVIDYEESKFKIVDYGCFYTDKDTPMEDRLCQIYEKLDDLIKKYN 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
PE A+E++F K+ + +GQAR + +L + + Y P +K + G G +KK
Sbjct: 61 PEHMAIEELFFFKNNKTVISVGQARGVLLLCGKQNGLKIQGYTPLQVKTGITGYGKAEKK 120
Query: 125 QIHMMLKMLMP-ESFFKG 141
Q+ +M++ + + K
Sbjct: 121 QVQLMVQKFLGMKEIPKP 138
>gi|325111100|ref|YP_004272168.1| Crossover junction endodeoxyribonuclease ruvC [Planctomyces
brasiliensis DSM 5305]
gi|324971368|gb|ADY62146.1| Crossover junction endodeoxyribonuclease ruvC [Planctomyces
brasiliensis DSM 5305]
Length = 167
Score = 153 bits (388), Expect = 5e-36, Method: Composition-based stats.
Identities = 50/160 (31%), Positives = 82/160 (51%), Gaps = 2/160 (1%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M + RI+GIDPGL RTG+G++ G I + +LA R+ ++ + VI
Sbjct: 1 MAQEQRILGIDPGLTRTGYGVLHAQDGRTILDEGGVIATTTNDTLADRIHEIATEVKAVI 60
Query: 61 KNWRPEEAAVEQVF-VNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVG 119
+W+P +EQVF + K+ + + + R + R+ V Y P IKK + G G
Sbjct: 61 NDWKPSVMVIEQVFSLGKNPKSAILMAHVRGALLALARQERLRVVHYKPTQIKKLLTGSG 120
Query: 120 HGDKKQIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHA 158
+K+Q+ +++K + + D ADALAIA+CH +
Sbjct: 121 RANKEQMQLVVKAELGLTEVPRPHDVADALAIALCHLHTT 160
>gi|58616730|ref|YP_195929.1| crossover junction endodeoxyribonuclease RuvC [Ehrlichia
ruminantium str. Gardel]
gi|75432634|sp|Q5FF10|RUVC_EHRRG RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|58416342|emb|CAI27455.1| Crossover junction endodeoxyribonuclease RuvC [Ehrlichia
ruminantium str. Gardel]
Length = 160
Score = 153 bits (388), Expect = 6e-36, Method: Composition-based stats.
Identities = 52/156 (33%), Positives = 101/156 (64%), Gaps = 3/156 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDN---LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
+ IIGIDP L TGW I+ V +N + V++G+I++ ++++ RL ++Y L +++
Sbjct: 1 MNIIGIDPSLNSTGWAILSVNDNNYNEIRLVNNGSILTSNKKTIGERLNKIYSELLNILN 60
Query: 62 NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
+++ + A++E++F+NK+ ++ L AR I +L+ +A IP+ EY+ N +KK++ G GH
Sbjct: 61 SYKVDTASMEEIFINKNPKSSTLLCYARGILLLTLDVACIPLFEYSANRVKKSITGNGHA 120
Query: 122 DKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYH 157
K+Q+ M++ ++ + D +DA+A+A+CH Y
Sbjct: 121 KKEQVCFMIENILNIKCYGTYDISDAIAVAICHIYS 156
>gi|220904014|ref|YP_002479326.1| Holliday junction resolvase [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
gi|219868313|gb|ACL48648.1| crossover junction endodeoxyribonuclease RuvC [Desulfovibrio
desulfuricans subsp. desulfuricans str. ATCC 27774]
Length = 173
Score = 153 bits (388), Expect = 6e-36, Method: Composition-based stats.
Identities = 58/158 (36%), Positives = 96/158 (60%), Gaps = 2/158 (1%)
Query: 4 SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVS-CVRQSLAFRLCQLYEGLTDVIKN 62
+ ++GIDPG +RTGWG+V L V G + + ++ + RL +Y L+ V+
Sbjct: 9 PVTVMGIDPGSQRTGWGVVREVSGVLQLVDCGVVRTASAGKAFSDRLACIYHELSTVLSR 68
Query: 63 WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
+PEEAA+EQVF ++A + LKLGQAR +A+ + A + +S+Y P +KK+++G G +
Sbjct: 69 LKPEEAAIEQVFTAQNAASALKLGQARGVAVAACAAHGLSISDYEPTLVKKSLVGTGRAE 128
Query: 123 KKQIHMMLKMLMP-ESFFKGKDAADALAIAVCHAYHAN 159
K+Q+ M++ L+ ++ D +DALA+AVCH
Sbjct: 129 KEQVAFMVQRLLNVKNASWSLDTSDALAVAVCHLTMRR 166
>gi|148258117|ref|YP_001242702.1| Holliday junction resolvase [Bradyrhizobium sp. BTAi1]
gi|166231582|sp|A5ERK2|RUVC_BRASB RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|146410290|gb|ABQ38796.1| Holliday junction endonuclease RuvC [Bradyrhizobium sp. BTAi1]
Length = 175
Score = 153 bits (388), Expect = 6e-36, Method: Composition-based stats.
Identities = 89/165 (53%), Positives = 120/165 (72%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
+R ++RIIGIDPGLRRTGWG+++ G+ L +V G++ LA RL ++EGL V+
Sbjct: 6 IRAAVRIIGIDPGLRRTGWGVIESEGNRLIYVGCGSVEPPDDLPLANRLLAIHEGLAKVL 65
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
+++P EAAVEQ FVNKD VATLKLGQAR IA+L+PA+ I V+EYAPN +KK V+G GH
Sbjct: 66 NDFQPLEAAVEQTFVNKDGVATLKLGQARGIAMLAPAMFGISVAEYAPNQVKKTVVGAGH 125
Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
DK QI +MLK+L+P++ DAADALAIA+ HA+H ++
Sbjct: 126 ADKGQIAVMLKILLPKAEPPSADAADALAIAITHAHHRQGQALRM 170
>gi|226226040|ref|YP_002760146.1| Holliday junction endonuclease RuvC [Gemmatimonas aurantiaca T-27]
gi|226089231|dbj|BAH37676.1| Holliday junction endonuclease RuvC [Gemmatimonas aurantiaca T-27]
Length = 181
Score = 153 bits (388), Expect = 6e-36, Method: Composition-based stats.
Identities = 47/142 (33%), Positives = 75/142 (52%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M++ ++GIDPG TG+G+V G V G I + + L RL ++EG+ ++I
Sbjct: 1 MKQPSLVLGIDPGTAVTGYGVVASDGRATTLVECGVIRTNAKDPLPSRLLDIHEGVRELI 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
RP+ ++E VF ++ TL LG AR + +L+ A + + EYAP IKKA+ G G
Sbjct: 61 ARHRPDTLSIEDVFFARNVRTTLVLGHARGVILLAGQQAELTIHEYAPTEIKKAITGRGG 120
Query: 121 GDKKQIHMMLKMLMPESFFKGK 142
K+Q+ M+ L+
Sbjct: 121 ATKEQVQYMVARLLHLKHAPEP 142
>gi|313683668|ref|YP_004061406.1| crossover junction endodeoxyribonuclease ruvc [Sulfuricurvum
kujiense DSM 16994]
gi|313156528|gb|ADR35206.1| crossover junction endodeoxyribonuclease RuvC [Sulfuricurvum
kujiense DSM 16994]
Length = 165
Score = 153 bits (388), Expect = 7e-36, Method: Composition-based stats.
Identities = 46/154 (29%), Positives = 76/154 (49%), Gaps = 2/154 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ I+GIDPG R G+ IV + G + + +G I +SL +++ Q+ E + + +
Sbjct: 1 MNILGIDPGTRNCGYAIVTIDGQKIRLIEAGLIK-IKAESLQYQIPQVAEAIEQLFRIHT 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
+E A+E +F + LKL Q R L +EY P +KKA+ G K+
Sbjct: 60 IDEVAMEDIFYAHNPKTVLKLAQFRGAITLKLLQEHGMFAEYTPLQVKKALTGKAKAAKE 119
Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYH 157
Q+ M+K ++ K D DA+A+A+ HA
Sbjct: 120 QVAFMVKQILGITKEIKPMDITDAMAVAITHAQR 153
>gi|224418816|ref|ZP_03656822.1| Holliday junction resolvase [Helicobacter canadensis MIT 98-5491]
gi|253828195|ref|ZP_04871080.1| Holliday junction resolvase [Helicobacter canadensis MIT 98-5491]
gi|313142335|ref|ZP_07804528.1| crossover junction endodeoxyribonuclease ruvC [Helicobacter
canadensis MIT 98-5491]
gi|253511601|gb|EES90260.1| Holliday junction resolvase [Helicobacter canadensis MIT 98-5491]
gi|313131366|gb|EFR48983.1| crossover junction endodeoxyribonuclease ruvC [Helicobacter
canadensis MIT 98-5491]
Length = 160
Score = 153 bits (388), Expect = 7e-36, Method: Composition-based stats.
Identities = 47/154 (30%), Positives = 76/154 (49%), Gaps = 2/154 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ I+GIDPG R G+ I+ + ++L + +G I + L ++ + EG+ V+KN
Sbjct: 1 MNILGIDPGSRNCGYAIIQMKKESLTLLEAGLIK-IKERILQHQILEFVEGIDLVLKNHL 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
A+E +F + +KL Q R L +EY P +KKA+ G G K+
Sbjct: 60 INSVAIEDIFYAYNPKTVIKLAQFRGALSLKILQELGNFTEYTPLQVKKALTGNGKAQKE 119
Query: 125 QIHMMLKMLMPES-FFKGKDAADALAIAVCHAYH 157
Q+ M+K ++ K D DA+AIA+ HA
Sbjct: 120 QVAFMVKRILGIKGEIKPLDITDAIAIAITHAQR 153
>gi|225181940|ref|ZP_03735374.1| crossover junction endodeoxyribonuclease RuvC [Dethiobacter
alkaliphilus AHT 1]
gi|225167380|gb|EEG76197.1| crossover junction endodeoxyribonuclease RuvC [Dethiobacter
alkaliphilus AHT 1]
Length = 168
Score = 153 bits (387), Expect = 7e-36, Method: Composition-based stats.
Identities = 47/138 (34%), Positives = 82/138 (59%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RIIGIDPG+ TG+GIV+ G + G +++ RL +Y L+ V+ +
Sbjct: 1 MRIIGIDPGIATTGYGIVESDGHRSVAIEYGCVITDKDLPGPQRLQCIYRELSAVVSRFE 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ AVE++F NK+ + +++G+AR +AIL+ A + + EY P +K++V+G G +KK
Sbjct: 61 PQVMAVEKLFFNKNINSAMQVGEARGVAILTGMHAGLDIFEYTPLQVKQSVVGFGRAEKK 120
Query: 125 QIHMMLKMLMPESFFKGK 142
Q+ M+K+L+ +
Sbjct: 121 QVQQMVKVLLNLTKIPRP 138
>gi|119356376|ref|YP_911020.1| crossover junction endodeoxyribonuclease RuvC [Chlorobium
phaeobacteroides DSM 266]
gi|166233187|sp|A1BDW9|RUVC_CHLPD RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|119353725|gb|ABL64596.1| crossover junction endodeoxyribonuclease RuvC [Chlorobium
phaeobacteroides DSM 266]
Length = 187
Score = 153 bits (387), Expect = 7e-36, Method: Composition-based stats.
Identities = 50/165 (30%), Positives = 85/165 (51%), Gaps = 1/165 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ ++G+DPG +TG+G+V ++ G I +S A R+ Q+Y L ++I + +
Sbjct: 1 MVVLGVDPGSLKTGYGVVRQDSSGFSVLTCGVIRLHSGKSHAERIGQIYRELEEIINSTK 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P A+E VF++K+A + LKLGQ R I + + EYAP +K AV G G K+
Sbjct: 61 PRRVALETVFLSKNAQSALKLGQVRGAVIALSMNTDLELHEYAPREVKSAVTGRGSASKE 120
Query: 125 QIHMMLKMLMPESF-FKGKDAADALAIAVCHAYHANSGYYKIASQ 168
Q+ M+ ++ + D DAL +A+C + + +Q
Sbjct: 121 QVAFMVTRMLQVTGHITSYDVTDALGLALCDLLRIGNRAAQEPAQ 165
>gi|150020930|ref|YP_001306284.1| Holliday junction resolvase [Thermosipho melanesiensis BI429]
gi|166233307|sp|A6LLU8|RUVC_THEM4 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|149793451|gb|ABR30899.1| crossover junction endodeoxyribonuclease RuvC [Thermosipho
melanesiensis BI429]
Length = 157
Score = 153 bits (387), Expect = 7e-36, Method: Composition-based stats.
Identities = 42/138 (30%), Positives = 79/138 (57%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
++IIGIDPG G+G+++ +G+ + ++ G I + S+ RL +YE ++K +
Sbjct: 1 MKIIGIDPGYGILGYGVLEKSGNKISHITHGVITTDKELSMYKRLQVIYEEFLRLLKEYS 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ A+E +F K+ +++G+AR + +L+ + +P+ E+ P +K + G GH DKK
Sbjct: 61 PDACAIESLFFYKNVKTAIRVGEARGVILLATSQMDLPLYEFTPYQVKNNITGYGHSDKK 120
Query: 125 QIHMMLKMLMPESFFKGK 142
Q+ M+KML+
Sbjct: 121 QVQKMVKMLLNLDKIPRP 138
>gi|161378163|ref|NP_299191.2| Holliday junction resolvase [Xylella fastidiosa 9a5c]
gi|20978755|sp|Q9PC76|RUVC_XYLFA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
Length = 173
Score = 153 bits (387), Expect = 7e-36, Method: Composition-based stats.
Identities = 69/158 (43%), Positives = 99/158 (62%), Gaps = 1/158 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAG-DNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
RI+GIDPG +RTG G++DV V +V + S A RL QL GL+ VI+ +
Sbjct: 3 RILGIDPGSQRTGVGVIDVDEYGCSRHVYHAPLVLLGQSSFAGRLKQLLLGLSAVIEEYS 62
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+E A+E+VF++K+A + LKLGQAR +AI + L +PV EYA IK AV+G G DK+
Sbjct: 63 PKEVAIEKVFMSKNADSALKLGQARGVAISAVVLRDLPVHEYAARQIKLAVVGRGGADKQ 122
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGY 162
QI M+ +++ DAADALA+A+ HA+ + +
Sbjct: 123 QIQHMVGVMLNLQGRLQSDAADALAVAITHAHVSATAQ 160
>gi|297616927|ref|YP_003702086.1| crossover junction endodeoxyribonuclease RuvC [Syntrophothermus
lipocalidus DSM 12680]
gi|297144764|gb|ADI01521.1| crossover junction endodeoxyribonuclease RuvC [Syntrophothermus
lipocalidus DSM 12680]
Length = 165
Score = 153 bits (387), Expect = 7e-36, Method: Composition-based stats.
Identities = 51/161 (31%), Positives = 95/161 (59%), Gaps = 1/161 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ ++GIDPG TG+G+++ G + G + + + A RL +++ + VI+ +
Sbjct: 1 MIVLGIDPGTATTGYGVLEDIGGKARLIDYGVVRTSSGTNQAIRLLEIHNRIEQVIQCYS 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P AVE++F +++A + +GQAR + +++ A + + EY P +K+AV+G G+ DK+
Sbjct: 61 PSVLAVEELFFSRNAKTAITVGQARGVVLMTAAERGLVIYEYTPLEVKQAVVGFGNADKR 120
Query: 125 QIHMMLKMLMP-ESFFKGKDAADALAIAVCHAYHANSGYYK 164
Q+ M+K ++ + K DAADALA+A+CH + A +
Sbjct: 121 QVQAMVKAILQMKEIPKPDDAADALAVAICHIHAARLAKVR 161
>gi|145220235|ref|YP_001130944.1| crossover junction endodeoxyribonuclease RuvC [Prosthecochloris
vibrioformis DSM 265]
gi|189046073|sp|A4SG33|RUVC_PROVI RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|145206399|gb|ABP37442.1| crossover junction endodeoxyribonuclease RuvC [Chlorobium
phaeovibrioides DSM 265]
Length = 189
Score = 153 bits (387), Expect = 8e-36, Method: Composition-based stats.
Identities = 54/160 (33%), Positives = 84/160 (52%), Gaps = 2/160 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+ ++GIDPG TG+G+V G +S G I R+S A R+ ++Y L+++I
Sbjct: 1 MVVLGIDPGSLATGYGVVSGDGRESFRALSCGLIRLHPRKSHAVRVGEIYRELSELIGEL 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
+P+ A+E FV K+ + LKLGQ R + + +P+ EYAP +K AV G G K
Sbjct: 61 KPDRVAIETAFVGKNVQSALKLGQVRGAIMALSFNSGVPIFEYAPREVKSAVTGRGGAAK 120
Query: 124 KQIHMMLKMLMPESF-FKGKDAADALAIAVCHAYHANSGY 162
+Q+ M+ ++ S K D DAL +A+C G
Sbjct: 121 EQVAFMVASMLSLSSVPKPFDVTDALGVALCDLLRCGGGQ 160
>gi|193212195|ref|YP_001998148.1| crossover junction endodeoxyribonuclease RuvC [Chlorobaculum parvum
NCIB 8327]
gi|238692617|sp|B3QLZ5|RUVC_CHLP8 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|193085672|gb|ACF10948.1| crossover junction endodeoxyribonuclease RuvC [Chlorobaculum parvum
NCIB 8327]
Length = 187
Score = 153 bits (387), Expect = 8e-36, Method: Composition-based stats.
Identities = 60/171 (35%), Positives = 84/171 (49%), Gaps = 11/171 (6%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ ++G+DPG R+TG+G++ A L + G I +L R+ QL GL +VI N +
Sbjct: 1 MIVLGVDPGSRKTGYGVIAEAEGRLSVLGCGLIRPAASGTLHERIGQLCSGLEEVIANMK 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
PE A+E FV ++ + L LGQ R + + +PV EYAP IK AV G G K+
Sbjct: 61 PEAVALETAFVGRNVRSALILGQVRGAVLATVIKLGLPVREYAPREIKLAVTGTGAARKE 120
Query: 125 QIHMMLKMLMPESF-FKGKDAADALAIAVC----------HAYHANSGYYK 164
Q+ ML L+ K D DAL IA C H SG +
Sbjct: 121 QVASMLPRLLGLEEAPKPLDVTDALGIAYCDLSRGASLTGHCGMTGSGKSR 171
>gi|295698522|ref|YP_003603177.1| crossover junction endodeoxyribonuclease RuvC [Candidatus Riesia
pediculicola USDA]
gi|291156987|gb|ADD79432.1| crossover junction endodeoxyribonuclease RuvC [Candidatus Riesia
pediculicola USDA]
Length = 177
Score = 153 bits (386), Expect = 9e-36, Method: Composition-based stats.
Identities = 56/156 (35%), Positives = 90/156 (57%), Gaps = 1/156 (0%)
Query: 4 SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
I I+GIDPG TG+GIV + ++ G I + RL +Y+G+ +I +
Sbjct: 1 MITILGIDPGSCITGYGIVQSQKKRILYIDGGCIK-NRLADMPNRLKTIYDGVQKIIHKY 59
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
RP+ AVEQ+FV+K+ + LKL QA+A+AIL+ ++P+ EY+ ++K+V+G G K
Sbjct: 60 RPDIFAVEQIFVSKNVSSALKLSQAKAVAILAAVKNQLPIFEYSTKKVRKSVVGTGSAKK 119
Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHAN 159
+ I + ++ S D ADALA+A+ H + N
Sbjct: 120 EHIQYAVHAILKLSSHPQSDIADALAVAIAHIFSEN 155
>gi|225849642|ref|YP_002729876.1| crossover junction endodeoxyribonuclease RuvC [Persephonella marina
EX-H1]
gi|225645877|gb|ACO04063.1| crossover junction endodeoxyribonuclease RuvC [Persephonella marina
EX-H1]
Length = 155
Score = 153 bits (386), Expect = 9e-36, Method: Composition-based stats.
Identities = 56/159 (35%), Positives = 85/159 (53%), Gaps = 5/159 (3%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M K+ ++GIDPG TG+ I + G VSSGTI + ++ FR+ +YE L I
Sbjct: 1 MGKT--VLGIDPGNYSTGFSIFKITGKKHRLVSSGTIKTSRKKPENFRI--IYESLERTI 56
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
+ P+E A+E F + +KLG+ R + +L A RIPV EY P +K A+ G G
Sbjct: 57 NEFSPDEIALESSFYGNNPQTIIKLGEIRGVILLLSAFYRIPVYEYTPQQVKNAITGYGW 116
Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHAN 159
K+ +++M++ L + D ADA+A+ CH N
Sbjct: 117 AKKEDVYLMVQKLFNIK-PETNDEADAIAVGFCHCLSKN 154
>gi|154252562|ref|YP_001413386.1| crossover junction endodeoxyribonuclease RuvC [Parvibaculum
lavamentivorans DS-1]
gi|187611454|sp|A7HUZ6|RUVC_PARL1 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|154156512|gb|ABS63729.1| crossover junction endodeoxyribonuclease RuvC [Parvibaculum
lavamentivorans DS-1]
Length = 175
Score = 153 bits (386), Expect = 9e-36, Method: Composition-based stats.
Identities = 85/165 (51%), Positives = 114/165 (69%), Gaps = 1/165 (0%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M S+ +GIDPGL TGWG++ ++G L +++GTI S R SLA RL Q+ GL VI
Sbjct: 1 MPVSLTYLGIDPGLTATGWGVIGISGSRLTHIANGTITSNARLSLAERLVQIEAGLVQVI 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
P+ AAVEQ FV +DA A LKLGQARAIA+L A A + V+EYAPN +KK+V+G GH
Sbjct: 61 HEHAPDAAAVEQAFVARDASAALKLGQARAIALLVSARAGLAVAEYAPNHVKKSVVGAGH 120
Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
DK QI +M++ML+P + + AADALA+A+CHA+ + S +I
Sbjct: 121 ADKSQIRLMVEMLLPGAKAGSEHAADALALAICHAH-SGSANERI 164
>gi|317484653|ref|ZP_07943556.1| crossover junction endodeoxyribonuclease RuvC [Bilophila
wadsworthia 3_1_6]
gi|316924127|gb|EFV45310.1| crossover junction endodeoxyribonuclease RuvC [Bilophila
wadsworthia 3_1_6]
Length = 169
Score = 153 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 65/169 (38%), Positives = 95/169 (56%), Gaps = 1/169 (0%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M +SI IIGIDPG R TGWG+V L V G I + A RL +++ + ++
Sbjct: 1 MSQSITIIGIDPGSRNTGWGVVREVSGVLQLVDCGVIRPPLDGEFASRLGVIFKEMHRLL 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
+P+EA+VEQVF K+A LKLGQAR AI + A +PV +Y P IKK+++GVG
Sbjct: 61 GRLKPDEASVEQVFTAKNAATALKLGQARGAAIAACAAYDLPVRDYEPTVIKKSLVGVGR 120
Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHA-YHANSGYYKIASQ 168
DK+Q+ M+ ++ D DALA A+CH + +++ +
Sbjct: 121 ADKEQVSFMVGRVLGVKPDWAVDTGDALAAAICHLTHRRFERLVRLSGR 169
>gi|94986712|ref|YP_594645.1| Holliday junction resolvase [Lawsonia intracellularis PHE/MN1-00]
gi|123262186|sp|Q1MRQ2|RUVC_LAWIP RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|94730961|emb|CAJ54324.1| Holliday junction resolvasome, endonuclease subunit [Lawsonia
intracellularis PHE/MN1-00]
Length = 168
Score = 153 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 57/148 (38%), Positives = 84/148 (56%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
+IGIDPG R TGWGIV L V G I S A RL +++ ++ +I ++P
Sbjct: 4 VIGIDPGSRNTGWGIVHEVSGVLHLVCCGVIQPSCNGSFAERLAHIFQEISSIIMKYKPV 63
Query: 67 EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
EA+VEQVF ++ + LKLGQAR A+++ A + + +Y TIKK ++G G K+Q+
Sbjct: 64 EASVEQVFTAQNPLTALKLGQARGAAVVACANQGLLIKDYEATTIKKTLVGHGRATKEQV 123
Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCH 154
M+ + D +DALA A+CH
Sbjct: 124 SFMVGRSLGVKPDWPIDTSDALATAICH 151
>gi|310658622|ref|YP_003936343.1| RuvABC resolvasome endonuclease subunit [Clostridium sticklandii
DSM 519]
gi|308825400|emb|CBH21438.1| component of RuvABC resolvasome, endonuclease [Clostridium
sticklandii]
Length = 163
Score = 153 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 41/136 (30%), Positives = 73/136 (53%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ ++GIDPG+ G+GI++ G+ + G I + S RL ++ GL +I ++
Sbjct: 1 MIVLGIDPGIAIVGYGIIEYIGNKFKVLDYGVIRTKSDLSYPERLELIFNGLNQIISSYN 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
+E AVE++F K+ + + AR + +L L + P+ EY P +K+ V G G DK+
Sbjct: 61 IDEIAVEELFFCKNVKTAIDVAHARGVIVLCGQLNKKPIYEYTPLQVKQGVSGYGKADKR 120
Query: 125 QIHMMLKMLMPESFFK 140
Q+ M+K+L+
Sbjct: 121 QVQEMVKLLLNLKTIP 136
>gi|332701179|ref|ZP_08421267.1| Crossover junction endodeoxyribonuclease ruvC [Desulfovibrio
africanus str. Walvis Bay]
gi|332551328|gb|EGJ48372.1| Crossover junction endodeoxyribonuclease ruvC [Desulfovibrio
africanus str. Walvis Bay]
Length = 178
Score = 153 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 65/168 (38%), Positives = 100/168 (59%), Gaps = 4/168 (2%)
Query: 4 SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
SI ++G+DPG RRTGWG+V A L V++G + + + L RL +++ L +I
Sbjct: 8 SITVLGLDPGSRRTGWGVVHEASGKLSLVAAGVVATDAKTDLCVRLGRIFTELAKLIHEH 67
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
RP EAAVE VFV+++ ++ LKLGQAR AI + A +PVS Y P+ +KK+++G G +K
Sbjct: 68 RPAEAAVENVFVSQNIMSALKLGQARGAAIAACAHLGLPVSSYEPSLVKKSLVGGGRAEK 127
Query: 124 KQIHMMLKMLMP---ESFFKGKDAADALAIAVCHAYHAN-SGYYKIAS 167
Q+ M+ ++ + G DA DALA+A+CH + + A
Sbjct: 128 GQVAFMVGRMLNVRLDDLKLGLDATDALAVAICHLNQRRLTRLTRQAG 175
>gi|300870811|ref|YP_003785682.1| crossover junction endodeoxyribonuclease RuvC [Brachyspira
pilosicoli 95/1000]
gi|300688510|gb|ADK31181.1| crossover junction endodeoxyribonuclease, RuvC [Brachyspira
pilosicoli 95/1000]
Length = 157
Score = 153 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 51/155 (32%), Positives = 81/155 (52%), Gaps = 1/155 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ +GIDPG R G+ V+ V+SG I + + RL +Y L +IK ++
Sbjct: 1 MITLGIDPGFARCGYAFVESKNSEYKIVNSGLIETFSNEEYNQRLSFIYTQLDSLIKQYK 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ A++E++F +K+ +K+ +AR + IL+ L I EY P IK + G G+ +K
Sbjct: 61 PDNASIEELFFSKNTKTAIKVAEARGVIILALTLNNIEFREYKPREIKSQITGNGNANKD 120
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHAN 159
+ M+ L S K D ADA+AIA+ HA
Sbjct: 121 AVIKMV-NLFTGSNIKQDDTADAVAIALAHASRNR 154
>gi|119952830|ref|YP_945039.1| crossover junction endodeoxyribonuclease RuvC [Borrelia turicatae
91E135]
gi|254767460|sp|A1QYH7|RUVC_BORT9 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|119861601|gb|AAX17369.1| crossover junction endodeoxyribonuclease RuvC [Borrelia turicatae
91E135]
Length = 161
Score = 153 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 50/157 (31%), Positives = 89/157 (56%), Gaps = 3/157 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPGL GWGI+D G +V GT+++ SL RL + + + +I N++
Sbjct: 3 MRILGIDPGLANVGWGILDRKGSKYMYVQDGTVITHPFMSLKDRLKLISDEIILIIDNFK 62
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ A++E ++ K+ + + +AR IL+ AL + EY P +K ++ G G +K
Sbjct: 63 PDVASIENIYFAKNKKTAISVSEARGAIILTFALKNLDFYEYTPIQVKNSISGFGRIEKV 122
Query: 125 QIHMMLKMLMPESF---FKGKDAADALAIAVCHAYHA 158
Q+ ++++L+ F ++DALA+A+CH +
Sbjct: 123 QVKYVIRILLGMKPDFIFTSDHSSDALALAICHGNYH 159
>gi|269123749|ref|YP_003306326.1| crossover junction endodeoxyribonuclease RuvC [Streptobacillus
moniliformis DSM 12112]
gi|268315075|gb|ACZ01449.1| crossover junction endodeoxyribonuclease RuvC [Streptobacillus
moniliformis DSM 12112]
Length = 200
Score = 153 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 35/136 (25%), Positives = 69/136 (50%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+R+IGIDPG G+ I+D + + G I + + RL Q++ L +I ++
Sbjct: 1 MRVIGIDPGTAIIGYSILDFKNSKVELIDYGCIYTDKDLPMPERLEQIFFKLETLINMYK 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ A+E++F K+ + + QAR + + ++ I + Y P +K + G G +KK
Sbjct: 61 PDHMAIEELFFFKNQKTIITVAQARGVIVAKAQISGIEIFNYTPLQVKTGITGYGRAEKK 120
Query: 125 QIHMMLKMLMPESFFK 140
Q+ M+++++
Sbjct: 121 QVQEMIRVILKLDEIP 136
>gi|258512079|ref|YP_003185513.1| crossover junction endodeoxyribonuclease RuvC [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
gi|257478805|gb|ACV59124.1| crossover junction endodeoxyribonuclease RuvC [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
Length = 184
Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats.
Identities = 53/141 (37%), Positives = 87/141 (61%), Gaps = 2/141 (1%)
Query: 3 KSIRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
+S+RI+G+DPGL R G+GI++ GD+L V+ G I + L RL +++ LT++ +
Sbjct: 2 ESLRILGVDPGLARLGFGIIERGPGDSLHHVAHGCIETGADTPLPERLRHIFQQLTELCR 61
Query: 62 NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
RP AVE++F +++ +GQAR +A+L+ A A + V EY P +K+AV G G
Sbjct: 62 THRPAVMAVEELFFSRNTTTAFTVGQARGVALLAGAEAGLAVMEYTPMQVKQAVTGYGRA 121
Query: 122 DKKQIHMMLKMLMPE-SFFKG 141
DK+Q+ M+++L+ S K
Sbjct: 122 DKRQVQEMVRLLLRLTSVPKP 142
>gi|218961234|ref|YP_001741009.1| crossover junction endodeoxyribonuclease RuvC [Candidatus
Cloacamonas acidaminovorans]
gi|167729891|emb|CAO80803.1| crossover junction endodeoxyribonuclease RuvC [Candidatus
Cloacamonas acidaminovorans]
Length = 159
Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats.
Identities = 56/154 (36%), Positives = 85/154 (55%), Gaps = 1/154 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ IIG DPG R G+G++ + + I ++LA RL LYE + +++ +
Sbjct: 1 MIIIGFDPGSRYCGYGLLQIESRKVLAAGCDVIDVTRGKTLALRLKSLYENIMQILEEYH 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
PE AAVE +F ++ + LG +R + +L+ A+ IPV EY+P IKK+V G G+ K+
Sbjct: 61 PEIAAVESIFFHRQVRSIFTLGHSRGVILLALAMQEIPVVEYSPREIKKSVCGNGNASKQ 120
Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYH 157
Q+ M+ L P K DA DALA+A CH
Sbjct: 121 QVRYMINQLYPLKESPKRDDAFDALAVATCHYNR 154
>gi|116253725|ref|YP_769563.1| Holliday junction resolvase [Rhizobium leguminosarum bv. viciae
3841]
gi|241206201|ref|YP_002977297.1| Holliday junction resolvase [Rhizobium leguminosarum bv. trifolii
WSM1325]
gi|123081788|sp|Q1MC56|RUVC_RHIL3 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|115258373|emb|CAK09476.1| putative crossover Holliday junction endodeoxyribonuclease RuvC
[Rhizobium leguminosarum bv. viciae 3841]
gi|240860091|gb|ACS57758.1| crossover junction endodeoxyribonuclease RuvC [Rhizobium
leguminosarum bv. trifolii WSM1325]
Length = 169
Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats.
Identities = 109/166 (65%), Positives = 139/166 (83%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M+ +IRI+GIDPGLRRTGWGI++ +G++L FV+SGT+ S LA RLCQL++GL +++
Sbjct: 1 MQNTIRIVGIDPGLRRTGWGIIETSGNSLRFVASGTVTSDGDMDLASRLCQLHDGLAEIV 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
+++P+EAAVEQ FVNKDAVATLKLGQAR IA+L PA A +PVSEYAPN +KKAVIGVGH
Sbjct: 61 HSYKPDEAAVEQTFVNKDAVATLKLGQARGIAMLVPARAGLPVSEYAPNAVKKAVIGVGH 120
Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
G+K+QIHMMLK+LMP+ FKG DAADALAIA+CHA++ S + A
Sbjct: 121 GEKQQIHMMLKILMPKVEFKGNDAADALAIAICHAHNRGSNRMRQA 166
>gi|303325470|ref|ZP_07355913.1| crossover junction endodeoxyribonuclease RuvC [Desulfovibrio sp.
3_1_syn3]
gi|302863386|gb|EFL86317.1| crossover junction endodeoxyribonuclease RuvC [Desulfovibrio sp.
3_1_syn3]
Length = 167
Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats.
Identities = 60/161 (37%), Positives = 94/161 (58%), Gaps = 3/161 (1%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVS-CVRQSLAFRLCQLYEGLTDV 59
M+ + +IGIDPG +RTGWG+V L V G + + + + RL ++Y L V
Sbjct: 1 MQ-PVTVIGIDPGSQRTGWGVVREVSGVLRLVDCGVVRTASAGKEFSARLARIYHELAKV 59
Query: 60 IKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVG 119
+ +P+EAA+EQVF K+A + LKLGQAR +A+ + A + +S+Y P +KK+++G G
Sbjct: 60 LGRCKPDEAAIEQVFTAKNAASALKLGQARGVAVAACAAYGLGISDYEPTLVKKSLVGTG 119
Query: 120 HGDKKQIHMMLKMLMP-ESFFKGKDAADALAIAVCHAYHAN 159
+K+Q+ M+K L+ D +DAL +AVCH
Sbjct: 120 RAEKEQVAFMVKRLLNVREADWALDTSDALGVAVCHLTMRR 160
>gi|28198788|ref|NP_779102.1| Holliday junction resolvase [Xylella fastidiosa Temecula1]
gi|32130013|sp|Q87D03|RUVC_XYLFT RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|28056879|gb|AAO28751.1| holliday junction resolvase, endodeoxyribonuclease [Xylella
fastidiosa Temecula1]
gi|307579941|gb|ADN63910.1| Holliday junction resolvase [Xylella fastidiosa subsp. fastidiosa
GB514]
Length = 173
Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 69/158 (43%), Positives = 99/158 (62%), Gaps = 1/158 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAG-DNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
RI+GIDPG +RTG G++DV V +V + S A RL QL GL+ VI+ +
Sbjct: 3 RILGIDPGSQRTGVGVIDVDEYGCSHHVYHAPLVLLGQSSFAGRLKQLLLGLSAVIEEYS 62
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+E A+E+VF++K+A + LKLGQAR +AI + L +PV EYA IK AV+G G DK+
Sbjct: 63 PKEVAIEKVFMSKNADSALKLGQARGVAISAVVLRDLPVHEYAARQIKLAVVGRGGADKQ 122
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGY 162
QI M+ +++ DAADALA+A+ HA+ + +
Sbjct: 123 QIQHMVGVMLNLQGRLQSDAADALAVAITHAHVSATAQ 160
>gi|71275804|ref|ZP_00652088.1| Crossover junction endodeoxyribonuclease RuvC [Xylella fastidiosa
Dixon]
gi|71900403|ref|ZP_00682536.1| Crossover junction endodeoxyribonuclease RuvC [Xylella fastidiosa
Ann-1]
gi|170730216|ref|YP_001775649.1| Holliday junction resolvase [Xylella fastidiosa M12]
gi|71163382|gb|EAO13100.1| Crossover junction endodeoxyribonuclease RuvC [Xylella fastidiosa
Dixon]
gi|71729835|gb|EAO31933.1| Crossover junction endodeoxyribonuclease RuvC [Xylella fastidiosa
Ann-1]
gi|167965009|gb|ACA12019.1| holliday junction resolvase, endodeoxyribonuclease [Xylella
fastidiosa M12]
Length = 181
Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 69/159 (43%), Positives = 100/159 (62%), Gaps = 1/159 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAG-DNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
RI+GIDPG +RTG G++DV V +V + S A RL QL GL+ VI+ +
Sbjct: 11 RILGIDPGSQRTGVGVIDVDEYGCSHHVYHAPLVLLGQSSFAGRLKQLLLGLSAVIEEYS 70
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+E A+E+VF++K+A + LKLGQAR +AI + L +PV EYA IK AV+G G DK+
Sbjct: 71 PKEVAIEKVFMSKNADSALKLGQARGVAISAVVLRDLPVHEYAARQIKLAVVGRGGADKQ 130
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYY 163
QI M+ +++ DAADALA+A+ HA+ + + +
Sbjct: 131 QIQHMVGVMLNLQGRLQSDAADALAVAITHAHVSATAQH 169
>gi|269138789|ref|YP_003295490.1| holliday junction resolvasome, endonuclease subunit [Edwardsiella
tarda EIB202]
gi|267984450|gb|ACY84279.1| holliday junction resolvasome, endonuclease subunit [Edwardsiella
tarda EIB202]
gi|304558781|gb|ADM41445.1| Crossover junction endodeoxyribonuclease RuvC [Edwardsiella tarda
FL6-60]
Length = 173
Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 64/162 (39%), Positives = 99/162 (61%), Gaps = 2/162 (1%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G L ++ SG I + V L RL +Y G++++I + P
Sbjct: 3 IILGIDPGSRITGYGVIRQQGRQLEYIGSGCIRTGV-DDLPTRLKLVYAGVSEIITQFNP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQVF+ K+A + LKLGQAR AI++ +PV EYA IK+ V+G G +K Q
Sbjct: 62 DCFAIEQVFMAKNADSALKLGQARGAAIVAAVNRDLPVFEYAARQIKQTVVGNGGAEKAQ 121
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
+ M++ L+ DAADALA+A+ H + + + +I+S
Sbjct: 122 VQHMVRSLLKLPANPQADAADALAVAITHCHVSQNAL-RISS 162
>gi|89094835|ref|ZP_01167768.1| Holliday junction resolvase [Oceanospirillum sp. MED92]
gi|89080890|gb|EAR60129.1| Holliday junction resolvase [Oceanospirillum sp. MED92]
Length = 172
Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 70/163 (42%), Positives = 105/163 (64%), Gaps = 2/163 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ I+GIDPG R TG+G+++ G+ +V+SG I L RL Q+Y G+++VI+ +
Sbjct: 1 MLILGIDPGSRITGYGVINCVGNKNEYVASGCIR-IKGDELPERLQQVYAGVSEVIERYC 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+E A+EQVF+ ++A + LKLGQAR +AI++ A +PV EYA +K++V+G G DK
Sbjct: 60 PQEFAIEQVFMARNADSALKLGQARGVAIVAGTNAELPVYEYAARKVKQSVVGKGSADKA 119
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
Q+ M+ ++ DAADALAIA+CHA+ NS K A
Sbjct: 120 QVQHMVAHILKLPGLPQADAADALAIALCHAHTRNS-LIKTAG 161
>gi|157825294|ref|YP_001493014.1| Holliday junction resolvase [Rickettsia akari str. Hartford]
gi|166233292|sp|A8GM81|RUVC_RICAH RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|157799252|gb|ABV74506.1| Holliday junction resolvase [Rickettsia akari str. Hartford]
Length = 157
Score = 151 bits (383), Expect = 2e-35, Method: Composition-based stats.
Identities = 58/155 (37%), Positives = 86/155 (55%), Gaps = 2/155 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ ++GIDP L GW +V L +++SG I + + + RL + L VI ++
Sbjct: 1 MIVLGIDPALGSLGWAVVARQLTKLKYLASGIIKTNSKDEIHNRLACINSTLEKVILEYQ 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P AA+E+ FVN ++V +LKLG AR + + + E+ PNT+KK V G GH +K
Sbjct: 61 PNMAAIEETFVNTNSVTSLKLGYARGAIMSLCGRYNLDIREFKPNTVKKTVTGYGHAEKD 120
Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAV-CHAYH 157
QI M+K+L+P S D ADA+AIA CH
Sbjct: 121 QILHMIKLLLPGTSLITNSDEADAIAIAYTCHVMR 155
>gi|302389939|ref|YP_003825760.1| crossover junction endodeoxyribonuclease RuvC [Thermosediminibacter
oceani DSM 16646]
gi|302200567|gb|ADL08137.1| crossover junction endodeoxyribonuclease RuvC [Thermosediminibacter
oceani DSM 16646]
Length = 177
Score = 151 bits (383), Expect = 2e-35, Method: Composition-based stats.
Identities = 47/136 (34%), Positives = 81/136 (59%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ I+GIDPG+ +G+G+V G + G + + S+ RL +YEG ++I+N++
Sbjct: 11 MIIMGIDPGIAISGYGVVCCNGTEFEVLDFGVLKTESSLSVPERLKAIYEGYLNLIENYK 70
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P AVE++F NK+A + +GQAR +A+L+ A + V EY P +K+AV+G G +K
Sbjct: 71 PAAIAVEELFFNKNAKTAIAVGQARGVALLAAASRNVKVYEYTPLQVKQAVVGYGRAEKM 130
Query: 125 QIHMMLKMLMPESFFK 140
Q+ M+++L+
Sbjct: 131 QVQEMVRVLLNLKTIP 146
>gi|238919501|ref|YP_002933016.1| Holliday junction resolvase [Edwardsiella ictaluri 93-146]
gi|259495687|sp|C5B9T0|RUVC_EDWI9 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|238869070|gb|ACR68781.1| crossover junction endodeoxyribonuclease RuvC, putative
[Edwardsiella ictaluri 93-146]
Length = 173
Score = 151 bits (383), Expect = 2e-35, Method: Composition-based stats.
Identities = 64/162 (39%), Positives = 99/162 (61%), Gaps = 2/162 (1%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G L ++ SG I + V L RL +Y G++++I + P
Sbjct: 3 IILGIDPGSRITGYGVIRQQGRQLEYIGSGCIRTAV-DDLPTRLKLVYAGVSEIITQFNP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQVF+ K+A + LKLGQAR AI++ +PV EYA IK+ V+G G +K Q
Sbjct: 62 DCFAIEQVFMAKNADSALKLGQARGAAIVAAVNRDLPVFEYAARQIKQTVVGNGGAEKAQ 121
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
+ M++ L+ DAADALA+A+ H + + + +I+S
Sbjct: 122 VQHMVRSLLKLPANPQADAADALAVAITHCHVSQNAL-RISS 162
>gi|15966504|ref|NP_386857.1| Holliday junction resolvase [Sinorhizobium meliloti 1021]
gi|307300459|ref|ZP_07580239.1| crossover junction endodeoxyribonuclease RuvC [Sinorhizobium
meliloti BL225C]
gi|307318324|ref|ZP_07597759.1| crossover junction endodeoxyribonuclease RuvC [Sinorhizobium
meliloti AK83]
gi|20978749|sp|Q92M90|RUVC_RHIME RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|15075775|emb|CAC47330.1| Probable holliday junction endodeoxyribonuclease [Sinorhizobium
meliloti 1021]
gi|306896006|gb|EFN26757.1| crossover junction endodeoxyribonuclease RuvC [Sinorhizobium
meliloti AK83]
gi|306904625|gb|EFN35209.1| crossover junction endodeoxyribonuclease RuvC [Sinorhizobium
meliloti BL225C]
Length = 170
Score = 151 bits (383), Expect = 2e-35, Method: Composition-based stats.
Identities = 106/167 (63%), Positives = 137/167 (82%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M+ +IRIIGIDPGLRRTGWG+++ G++L FV+SGT+ S LA RLCQL++GL +V+
Sbjct: 1 MQNTIRIIGIDPGLRRTGWGVIETLGNSLRFVASGTVTSDGELDLASRLCQLHDGLAEVV 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
++P EAAVEQ FVNKDA ATLKLGQAR IA+L PA A + V+EYAPN +KKAVIGVGH
Sbjct: 61 HGYQPHEAAVEQTFVNKDATATLKLGQARGIAMLVPARAGLRVAEYAPNAVKKAVIGVGH 120
Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
G+K+QIHMMLK+LMP++ FKG DAADALAIA+CHA++ + ++A+
Sbjct: 121 GEKQQIHMMLKVLMPKAEFKGNDAADALAIAICHAHNRQAVTSRLAA 167
>gi|193215492|ref|YP_001996691.1| crossover junction endodeoxyribonuclease RuvC [Chloroherpeton
thalassium ATCC 35110]
gi|238692692|sp|B3QTP6|RUVC_CHLT3 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|193088969|gb|ACF14244.1| crossover junction endodeoxyribonuclease RuvC [Chloroherpeton
thalassium ATCC 35110]
Length = 186
Score = 151 bits (383), Expect = 2e-35, Method: Composition-based stats.
Identities = 47/160 (29%), Positives = 80/160 (50%), Gaps = 1/160 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ +G+DPG TG+G++ + I + R+ +Y+ L VI ++
Sbjct: 1 MITLGVDPGSIVTGYGVIGKSEAGFRVFDYSAIRPGGKCDFPQRIKYIYDTLEKVICAYK 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P + ++E F K+A + LKLGQ R I+ + EY+P +KK+V G G+ K+
Sbjct: 61 PTQLSLETAFYGKNAQSALKLGQVRGAIIILAMNYNLKFVEYSPREVKKSVAGTGNASKE 120
Query: 125 QIHMMLKMLMPESFFK-GKDAADALAIAVCHAYHANSGYY 163
Q+ M+K ++ K D +DALAIA+C + + S
Sbjct: 121 QVAYMVKKMLSIDDEKMALDTSDALAIALCGHFKSASMAA 160
>gi|153951955|ref|YP_001399004.1| Holliday junction resolvase [Campylobacter jejuni subsp. doylei
269.97]
gi|166233185|sp|A7H674|RUVC_CAMJD RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|152939401|gb|ABS44142.1| crossover junction endodeoxyribonuclease RuvC [Campylobacter jejuni
subsp. doylei 269.97]
Length = 160
Score = 151 bits (383), Expect = 2e-35, Method: Composition-based stats.
Identities = 50/159 (31%), Positives = 80/159 (50%), Gaps = 2/159 (1%)
Query: 4 SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+++I+GIDPG + G+ I++ + + +G I L +++ +L EGL + KN
Sbjct: 2 NLKILGIDPGSKNCGYAIIERSKGKNILIEAGLIKIKPST-LQYQITELCEGLDLIFKNH 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
+E A+E +F + LKL Q R L +EY P +KKAV G K
Sbjct: 61 SFDEVAIEDIFFAYNPKTVLKLAQFRGALSLKILQIHGDFAEYTPLQVKKAVTGKAKATK 120
Query: 124 KQIHMMLKMLMPESF-FKGKDAADALAIAVCHAYHANSG 161
+Q+ M+K L+ S K D DA+AIA+ HA + +
Sbjct: 121 EQVAFMVKRLLGLSKDIKPLDITDAIAIALTHAANLRTR 159
>gi|114327762|ref|YP_744919.1| Holliday junction resolvase [Granulibacter bethesdensis CGDNIH1]
gi|122327272|sp|Q0BT56|RUVC_GRABC RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|114315936|gb|ABI61996.1| crossover junction endodeoxyribonuclease ruvC [Granulibacter
bethesdensis CGDNIH1]
Length = 178
Score = 151 bits (383), Expect = 2e-35, Method: Composition-based stats.
Identities = 72/162 (44%), Positives = 111/162 (68%)
Query: 2 RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
+ ++R++GIDPGLR TGWG+++ G+ L ++ G I + +S+ RL L++ LT ++
Sbjct: 9 QATVRMLGIDPGLRFTGWGVIEATGNRLRHIADGVIATDSTESVPARLRVLHDTLTSLLV 68
Query: 62 NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
+ P+EAAVE+ +VN++ ATLKLG AR +A+L+PAL +PV+EY +K AV+G G
Sbjct: 69 TYHPDEAAVEETYVNRNGTATLKLGYARGVALLAPALRNVPVAEYGAKAVKLAVVGTGGA 128
Query: 122 DKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYY 163
K Q+ MM++ L+P + K DAADALA+A+CHA+H S
Sbjct: 129 TKDQVQMMVQRLLPGATLKRADAADALAVAICHAHHRASRSA 170
>gi|218288866|ref|ZP_03493117.1| crossover junction endodeoxyribonuclease RuvC [Alicyclobacillus
acidocaldarius LAA1]
gi|218240955|gb|EED08132.1| crossover junction endodeoxyribonuclease RuvC [Alicyclobacillus
acidocaldarius LAA1]
Length = 184
Score = 151 bits (383), Expect = 2e-35, Method: Composition-based stats.
Identities = 52/139 (37%), Positives = 85/139 (61%), Gaps = 2/139 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+RI+G+DPGL R G+GI++ GD+L V+ G I + L RL +++ LT++ +
Sbjct: 4 LRILGVDPGLARLGFGIIERGPGDSLHHVAHGCIETDADTPLPERLRHIFQQLTELCRTH 63
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
RP VE++F +++A +GQAR +A+L+ A A + V EY P +K+AV G G DK
Sbjct: 64 RPAVMVVEELFFSRNATTAFTVGQARGVALLAGAEAGLAVMEYTPMQVKQAVTGYGRADK 123
Query: 124 KQIHMMLKMLMPE-SFFKG 141
+Q+ M+++L+ S K
Sbjct: 124 RQVQEMVRLLLRLTSVPKP 142
>gi|206889628|ref|YP_002248503.1| crossover junction endodeoxyribonuclease RuvC [Thermodesulfovibrio
yellowstonii DSM 11347]
gi|226698768|sp|B5YJT8|RUVC_THEYD RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|206741566|gb|ACI20623.1| crossover junction endodeoxyribonuclease RuvC [Thermodesulfovibrio
yellowstonii DSM 11347]
Length = 156
Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats.
Identities = 61/156 (39%), Positives = 86/156 (55%), Gaps = 2/156 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ +IGIDPG R G+GIVD + + + TI SL +RL +YE L +++ +
Sbjct: 1 MTVIGIDPGSRHFGYGIVDAK--QMKLIHANTINLSHDISLPYRLKSIYEILLSMVEKYS 58
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+E AVE++FV K ++ LG ARAIA L A IPV EY+ IKKA+ G G K
Sbjct: 59 PDEMAVEKIFVGKKITSSFVLGYARAIAFLVAAQKEIPVYEYSSTEIKKALTGYGRAHKV 118
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
Q+ M+ + D ADALA+A+CH +
Sbjct: 119 QVKSMVYNFLHIDKKISYDCADALAVAICHINSKTN 154
>gi|115526758|ref|YP_783669.1| Holliday junction resolvase [Rhodopseudomonas palustris BisA53]
gi|122294483|sp|Q07H95|RUVC_RHOP5 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|115520705|gb|ABJ08689.1| Holliday junction endonuclease RuvC [Rhodopseudomonas palustris
BisA53]
Length = 174
Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats.
Identities = 85/157 (54%), Positives = 116/157 (73%)
Query: 2 RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
R+ +RI+GIDPGLRRTGWG+++ G+ L F+ G++ LA RL ++ GL V+
Sbjct: 7 RQPVRILGIDPGLRRTGWGVIESEGNRLVFIGCGSVEPPDTLPLAERLLAIHRGLAKVLA 66
Query: 62 NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
++ P+EAAVEQ FVNKDA ATLKLGQAR +A+L+PA+ + V+EYAPN +KK V+G GH
Sbjct: 67 DFAPDEAAVEQTFVNKDAGATLKLGQARGVAMLAPAMVGLSVAEYAPNLVKKTVVGAGHA 126
Query: 122 DKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHA 158
DK QI MMLK+L+P++ DAADALA+A+ HA+H
Sbjct: 127 DKNQIQMMLKILLPKAEPPSADAADALAVAITHAHHR 163
>gi|149194731|ref|ZP_01871826.1| Holliday junction resolvase [Caminibacter mediatlanticus TB-2]
gi|149135154|gb|EDM23635.1| Holliday junction resolvase [Caminibacter mediatlanticus TB-2]
Length = 154
Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats.
Identities = 51/154 (33%), Positives = 78/154 (50%), Gaps = 4/154 (2%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPG R G+ I++ L + +G I + L ++L QL EGL +I +
Sbjct: 1 MRILGIDPGTIRCGYAIIESF-PKLKLIDAGFIK-ITEKELQYQLSQLIEGLD-LILENQ 57
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
+E A+E +F + LKL Q R L +EY P +KKAV G G K+
Sbjct: 58 IDEVAIEDIFYAYNPKTVLKLAQFRGALSLRILQKHGFFAEYTPLQVKKAVTGNGKAKKE 117
Query: 125 QIHMMLKMLMPES-FFKGKDAADALAIAVCHAYH 157
Q+ M+K ++ K D DA+A+A+ H+
Sbjct: 118 QVAFMVKRILGIKGDIKPLDITDAIAVAITHSQR 151
>gi|9107000|gb|AAF84711.1|AE004010_8 holliday junction resolvase, endodeoxyribonuclease [Xylella
fastidiosa 9a5c]
Length = 204
Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats.
Identities = 69/158 (43%), Positives = 99/158 (62%), Gaps = 1/158 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAG-DNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
RI+GIDPG +RTG G++DV V +V + S A RL QL GL+ VI+ +
Sbjct: 34 RILGIDPGSQRTGVGVIDVDEYGCSRHVYHAPLVLLGQSSFAGRLKQLLLGLSAVIEEYS 93
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+E A+E+VF++K+A + LKLGQAR +AI + L +PV EYA IK AV+G G DK+
Sbjct: 94 PKEVAIEKVFMSKNADSALKLGQARGVAISAVVLRDLPVHEYAARQIKLAVVGRGGADKQ 153
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGY 162
QI M+ +++ DAADALA+A+ HA+ + +
Sbjct: 154 QIQHMVGVMLNLQGRLQSDAADALAVAITHAHVSATAQ 191
>gi|226942103|ref|YP_002797177.1| Holliday junction resolvase [Laribacter hongkongensis HLHK9]
gi|226717030|gb|ACO76168.1| RuvC [Laribacter hongkongensis HLHK9]
Length = 179
Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats.
Identities = 70/163 (42%), Positives = 104/163 (63%)
Query: 4 SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
R++GIDPG R TG+G++D+ G +V+SG I + L R+ L EGL++V+ +
Sbjct: 5 PRRLLGIDPGSRITGFGVIDLVGSQRVYVASGCIRTRAGAPLTERIKTLLEGLSEVVAAY 64
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
+P EAAVEQVFVN + ATL LGQAR + + LA +P+SEY +K++V+G G DK
Sbjct: 65 QPGEAAVEQVFVNVNPSATLMLGQARGAVLSALVLAGLPISEYTALQVKQSVVGHGKADK 124
Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
+Q+ M+ L+ + DAADALA+A+CHA H+++ A
Sbjct: 125 EQVQHMVVRLLGLTGTPQADAADALAVALCHANHSHAAIAGFA 167
>gi|121612651|ref|YP_001001372.1| Holliday junction resolvase [Campylobacter jejuni subsp. jejuni
81-176]
gi|166233186|sp|A1W1Y1|RUVC_CAMJJ RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|121504188|gb|EAQ71982.2| crossover junction endodeoxyribonuclease RuvC [Campylobacter jejuni
subsp. jejuni 81-176]
Length = 160
Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats.
Identities = 50/153 (32%), Positives = 77/153 (50%), Gaps = 2/153 (1%)
Query: 4 SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+++I+GIDPG R G+ I++ + +G I L +++ +L EGL + KN
Sbjct: 2 NLKILGIDPGSRNCGYAIMEANKGKNILIEAGLIKIKPST-LQYQITELCEGLDLIFKNH 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
+E A+E +F + LKL Q R L +EY P +KKAV G K
Sbjct: 61 SFDEVAIEDIFFAYNPKTVLKLAQFRGALSLKILQIHGDFAEYTPLQVKKAVTGKAKATK 120
Query: 124 KQIHMMLKMLMPESF-FKGKDAADALAIAVCHA 155
+Q+ M+K L+ S K D DA+A+A+ HA
Sbjct: 121 EQVAFMVKRLLGLSKDIKPLDITDAIAVALTHA 153
>gi|42523919|ref|NP_969299.1| crossover junction endodeoxyribonuclease RuvC [Bdellovibrio
bacteriovorus HD100]
gi|81616889|sp|Q6MKB6|RUVC_BDEBA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|39576126|emb|CAE80292.1| crossover junction endodeoxyribonuclease RuvC [Bdellovibrio
bacteriovorus HD100]
Length = 168
Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats.
Identities = 52/153 (33%), Positives = 88/153 (57%)
Query: 4 SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
S+ I+G+DPG R TG+G+V VA + ++ G IV + R+ +L +V++ +
Sbjct: 2 SLVILGVDPGSRITGFGVVRVANGKIEHINHGVIVMDGDDAFPRRMTELGSAFREVMEKY 61
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
+PE+ +E++F+ K+A + KLG AR + + L V EYA ++KK V G G K
Sbjct: 62 KPEQVVIEKIFLGKNADSAFKLGHARGVIMYEAGLGGAEVQEYATRSVKKGVTGNGGASK 121
Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
+ + +LK+++ DA+DALA+A HA+
Sbjct: 122 EDVQAILKVMLSLKTISRIDASDALAMACYHAF 154
>gi|328953689|ref|YP_004371023.1| Crossover junction endodeoxyribonuclease ruvC [Desulfobacca
acetoxidans DSM 11109]
gi|328454013|gb|AEB09842.1| Crossover junction endodeoxyribonuclease ruvC [Desulfobacca
acetoxidans DSM 11109]
Length = 167
Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats.
Identities = 60/159 (37%), Positives = 98/159 (61%), Gaps = 3/159 (1%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M + I+G+DPG R TG+G++ G++L + SG I + S + RL ++Y+ L +I
Sbjct: 1 MNR--IILGVDPGSRATGYGLIAATGESLLHLESGFIALPAQLSHSQRLARIYQRLESLI 58
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
+ PE AVE VF+ + + LKLGQ R + +L+ A IPV EY+P T+KKA++G G
Sbjct: 59 SRYNPEALAVEAVFLAHNVQSALKLGQVRGVVLLAAGQADIPVFEYSPLTLKKAIVGYGQ 118
Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHAN 159
K Q+ +M++ L+ + + ADALA+++CH +H+
Sbjct: 119 ATKTQVLLMVENLLGLT-LNNHNTADALALSLCHHFHSR 156
>gi|227823321|ref|YP_002827293.1| Holliday junction resolvase [Sinorhizobium fredii NGR234]
gi|254767481|sp|C3MIH7|RUVC_RHISN RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|227342322|gb|ACP26540.1| crossover junction endodeoxyribonuclease RuvC [Sinorhizobium fredii
NGR234]
Length = 170
Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats.
Identities = 107/167 (64%), Positives = 137/167 (82%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M+ +IRIIGIDPGLRRTGWGI++ G++L FV+SGT+ S LA RLCQL++GL +V+
Sbjct: 1 MQTTIRIIGIDPGLRRTGWGIIETLGNSLRFVASGTVTSDGEMDLASRLCQLHDGLAEVV 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
++P EAAVEQ FVNKDA ATLKLGQAR IA+L PA A + V+EYAPN +KKAVIGVGH
Sbjct: 61 HGYQPHEAAVEQTFVNKDATATLKLGQARGIAMLVPARAGLRVAEYAPNAVKKAVIGVGH 120
Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
G+K+QIHMMLK+LMP++ FKG DAADALAIA+CHA++ + ++A+
Sbjct: 121 GEKQQIHMMLKVLMPKAEFKGNDAADALAIAICHAHNRQAVTSRLAA 167
>gi|46580663|ref|YP_011471.1| Holliday junction resolvase [Desulfovibrio vulgaris str.
Hildenborough]
gi|81566319|sp|Q729U1|RUVC_DESVH RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|46450082|gb|AAS96731.1| crossover junction endodeoxyribonuclease RuvC [Desulfovibrio
vulgaris str. Hildenborough]
gi|311234391|gb|ADP87245.1| crossover junction endodeoxyribonuclease RuvC [Desulfovibrio
vulgaris RCH1]
Length = 166
Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats.
Identities = 64/167 (38%), Positives = 89/167 (53%), Gaps = 3/167 (1%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M S+ +IGIDPG + TGWGIV A L V G I A RL LY L DV+
Sbjct: 1 MAASVTVIGIDPGSQCTGWGIVREASGVLTLVDCGAIR-PKGGDFAARLGDLYRQLADVV 59
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
+ P+EAAVE V ++ LKLGQAR + + + A +PV +Y P+ IKKA++G G
Sbjct: 60 RAHTPDEAAVEDVHAAQNVATALKLGQARGVVVAACAAHGVPVIDYRPSVIKKALVGTGR 119
Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
+K+Q+ M+ ++ D DALA A+CH ++A
Sbjct: 120 AEKEQVGYMVGQVLGVRPDWKLDTGDALAAAICHLNQRR--LTRLAG 164
>gi|109947765|ref|YP_664993.1| Holliday junction resolvase [Helicobacter acinonychis str. Sheeba]
gi|123173314|sp|Q17WI2|RUVC_HELAH RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|109714986|emb|CAJ99994.1| crossover junction endodeoxyribonuclease [Helicobacter acinonychis
str. Sheeba]
Length = 157
Score = 151 bits (381), Expect = 4e-35, Method: Composition-based stats.
Identities = 49/154 (31%), Positives = 78/154 (50%), Gaps = 2/154 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ I+GIDPG R+ G+ I+ A + L +++G I L ++ L E L ++ +
Sbjct: 1 MHILGIDPGSRKCGYAIISYASNKLSLITAGFIN-ITTTHLQEQILDLIEALDCLLDRYE 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
E A+E +F + + +KL Q R L SEY P +KKA+ G G K+
Sbjct: 60 VHEVAIEDIFFGYNPKSVIKLAQFRGALSLKILERVGNFSEYTPLQVKKALTGNGKAAKE 119
Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYH 157
Q+ M+K L+ S K D +DA+A+A+ HA
Sbjct: 120 QVAFMVKRLLHITSEIKPLDISDAIAVAIMHAQR 153
>gi|157803304|ref|YP_001491853.1| Holliday junction resolvase [Rickettsia canadensis str. McKiel]
gi|157784567|gb|ABV73068.1| Holliday junction resolvase [Rickettsia canadensis str. McKiel]
Length = 180
Score = 151 bits (381), Expect = 4e-35, Method: Composition-based stats.
Identities = 54/151 (35%), Positives = 88/151 (58%), Gaps = 1/151 (0%)
Query: 4 SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
++ ++GIDP L GW +V L +++SGTI + + + RL + L VI +
Sbjct: 23 TMIVLGIDPALGSLGWAVVVRQSTKLKYLASGTIKTNSKDEIHHRLAFINITLEKVILEY 82
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
+P AA+E++FVN +++ +LKLG AR + + + + E+ PN +KK+V G GH +K
Sbjct: 83 QPNMAAIEEIFVNTNSLTSLKLGYARGVIMSLIGRYNLGLREFKPNMVKKSVTGYGHAEK 142
Query: 124 KQIHMMLKMLMPE-SFFKGKDAADALAIAVC 153
+QI M+K+L+P S D DA+AIA
Sbjct: 143 EQILHMIKLLLPGTSLITNSDEGDAIAIAYT 173
>gi|218513496|ref|ZP_03510336.1| Holliday junction resolvase [Rhizobium etli 8C-3]
Length = 145
Score = 151 bits (381), Expect = 4e-35, Method: Composition-based stats.
Identities = 99/145 (68%), Positives = 120/145 (82%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M+ +IRI+GIDPGLRRTGWGI+D G++L FV+SGT+ S LA RLCQL++GL +V+
Sbjct: 1 MQNTIRIVGIDPGLRRTGWGIIDTLGNSLRFVASGTVTSDGDMDLASRLCQLHDGLAEVV 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
++P+EAAVEQ FVNKDAVATLKLGQAR IA+L PA A + VSEYAPN +KKAVIGVGH
Sbjct: 61 HAYKPDEAAVEQTFVNKDAVATLKLGQARGIAMLVPARAGLHVSEYAPNAVKKAVIGVGH 120
Query: 121 GDKKQIHMMLKMLMPESFFKGKDAA 145
G+K QIHMMLK+LMP+ FKG DAA
Sbjct: 121 GEKHQIHMMLKILMPKVEFKGDDAA 145
>gi|225620451|ref|YP_002721708.1| crossover junction endodeoxyribonuclease [Brachyspira
hyodysenteriae WA1]
gi|254767461|sp|C0R1L6|RUVC_BRAHW RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|225215270|gb|ACN84004.1| crossover junction endodeoxyribonuclease [Brachyspira
hyodysenteriae WA1]
Length = 160
Score = 151 bits (381), Expect = 4e-35, Method: Composition-based stats.
Identities = 50/155 (32%), Positives = 79/155 (50%), Gaps = 1/155 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ +GIDPG R G+ ++ V SG I + Q RL +Y L ++IK ++
Sbjct: 1 MITLGIDPGFARCGYAFIEAKNSAYKIVDSGLIETFQNQEYNQRLSFIYTQLDELIKKYK 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P AA+E++F +K+ +K+ +AR + IL+ L I EY P +K + G G+ +K
Sbjct: 61 PNNAAIEELFFSKNTKTAIKVAEARGVIILALTLNNIEFQEYKPKEVKSQITGNGNANKD 120
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHAN 159
+ M+ L S D ADA+AIA+ HA
Sbjct: 121 AMMKMV-NLFTGSNIIQDDTADAVAIALAHASRNR 154
>gi|300717085|ref|YP_003741888.1| Crossover junction endodeoxyribonuclease [Erwinia billingiae Eb661]
gi|299062921|emb|CAX60041.1| Crossover junction endodeoxyribonuclease [Erwinia billingiae Eb661]
Length = 174
Score = 151 bits (381), Expect = 4e-35, Method: Composition-based stats.
Identities = 54/136 (39%), Positives = 83/136 (61%), Gaps = 1/136 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G L ++ SG I + V L RL +Y G++++I ++P
Sbjct: 3 IILGIDPGSRITGYGVIRQVGRQLTYLGSGCIRTNV-VDLPSRLKLIYAGVSEIITQFQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
E A+EQVF+ K+A + LKLGQAR AI++ +PV EYA +K+ V+G G +K Q
Sbjct: 62 EFFAIEQVFMAKNADSALKLGQARGAAIVAAVNHDLPVFEYAARQVKQTVVGTGSAEKSQ 121
Query: 126 IHMMLKMLMPESFFKG 141
+ M++ L+ S
Sbjct: 122 VQHMVRTLLKLSANPQ 137
>gi|182681487|ref|YP_001829647.1| Holliday junction resolvase [Xylella fastidiosa M23]
gi|182631597|gb|ACB92373.1| crossover junction endodeoxyribonuclease RuvC [Xylella fastidiosa
M23]
Length = 204
Score = 150 bits (380), Expect = 5e-35, Method: Composition-based stats.
Identities = 69/158 (43%), Positives = 99/158 (62%), Gaps = 1/158 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAG-DNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
RI+GIDPG +RTG G++DV V +V + S A RL QL GL+ VI+ +
Sbjct: 34 RILGIDPGSQRTGVGVIDVDEYGCSHHVYHAPLVLLGQSSFAGRLKQLLLGLSAVIEEYS 93
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+E A+E+VF++K+A + LKLGQAR +AI + L +PV EYA IK AV+G G DK+
Sbjct: 94 PKEVAIEKVFMSKNADSALKLGQARGVAISAVVLRDLPVHEYAARQIKLAVVGRGGADKQ 153
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGY 162
QI M+ +++ DAADALA+A+ HA+ + +
Sbjct: 154 QIQHMVGVMLNLQGRLQSDAADALAVAITHAHVSATAQ 191
>gi|187611518|sp|Q1QHP5|RUVC_NITHX RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
Length = 170
Score = 150 bits (380), Expect = 5e-35, Method: Composition-based stats.
Identities = 90/164 (54%), Positives = 121/164 (73%)
Query: 2 RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
IRI+GIDPGLRRTGWG++D+ G+ L FV G++ + + +LA RL ++EGL V+
Sbjct: 3 SSPIRILGIDPGLRRTGWGVLDIEGNRLMFVGCGSVETREQMALASRLLAIHEGLGRVLD 62
Query: 62 NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
+RP EAA+EQ FVNKD VATLKLGQAR +A+L+PA+ I V+EYAPN +KK V+G GH
Sbjct: 63 EFRPAEAAIEQTFVNKDGVATLKLGQARGVAMLAPAMFGIVVAEYAPNQVKKTVVGAGHA 122
Query: 122 DKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
DK QI MLK+L+P++ K DAADALAIA+ HA+H + ++
Sbjct: 123 DKTQIQAMLKILLPKADPKSADAADALAIAITHAHHRGAAALRM 166
>gi|317491786|ref|ZP_07950221.1| crossover junction endodeoxyribonuclease RuvC [Enterobacteriaceae
bacterium 9_2_54FAA]
gi|316920220|gb|EFV41544.1| crossover junction endodeoxyribonuclease RuvC [Enterobacteriaceae
bacterium 9_2_54FAA]
Length = 173
Score = 150 bits (380), Expect = 5e-35, Method: Composition-based stats.
Identities = 63/157 (40%), Positives = 97/157 (61%), Gaps = 1/157 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G L ++ SG I + V L RL +Y G++++I ++P
Sbjct: 3 IILGIDPGSRITGYGVIRQVGRKLEYLGSGCIRTSV-DDLPTRLKLVYAGVSEIITQFQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQVF+ K+A + LKLGQAR AI++ +PV EYA IK+ V+G G +K Q
Sbjct: 62 DIFAIEQVFMAKNADSALKLGQARGAAIVAAVNVDLPVFEYAARQIKQTVVGTGAAEKAQ 121
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGY 162
+ M++ L+ S DAADALA+A+ H + + +
Sbjct: 122 VQHMVRSLLKLSANPQADAADALAVAITHCHVSQNAL 158
>gi|294786920|ref|ZP_06752174.1| crossover junction endodeoxyribonuclease RuvC [Parascardovia
denticolens F0305]
gi|315226556|ref|ZP_07868344.1| crossover junction endoribonuclease subunit C [Parascardovia
denticolens DSM 10105]
gi|294485753|gb|EFG33387.1| crossover junction endodeoxyribonuclease RuvC [Parascardovia
denticolens F0305]
gi|315120688|gb|EFT83820.1| crossover junction endoribonuclease subunit C [Parascardovia
denticolens DSM 10105]
Length = 192
Score = 150 bits (380), Expect = 5e-35, Method: Composition-based stats.
Identities = 51/155 (32%), Positives = 80/155 (51%), Gaps = 2/155 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+ I G+DPGL R G GI++ L F+ + S Q RL ++ GL + +
Sbjct: 1 MIICGVDPGLTRCGVGIIEAGPSRRLSFIHVDVVRSDPHQPQDARLLTIFNGLCAHMDAY 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
P+ ++E+VF ++ L QA +A+++ A IPVS + P K AV G G DK
Sbjct: 61 LPDVVSIERVFAQENRNTVLGTAQAAGLAMVAAAQRGIPVSLHTPTEAKLAVTGNGKADK 120
Query: 124 KQIHMMLKMLMPESFFK-GKDAADALAIAVCHAYH 157
Q+ M+ ++ + DAAD+LA+A+CHA
Sbjct: 121 AQVQTMVAKILSLNAPPSPPDAADSLALAICHALR 155
>gi|283781354|ref|YP_003372109.1| crossover junction endodeoxyribonuclease RuvC [Pirellula staleyi
DSM 6068]
gi|283439807|gb|ADB18249.1| crossover junction endodeoxyribonuclease RuvC [Pirellula staleyi
DSM 6068]
Length = 186
Score = 150 bits (380), Expect = 5e-35, Method: Composition-based stats.
Identities = 52/163 (31%), Positives = 91/163 (55%), Gaps = 2/163 (1%)
Query: 3 KSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
+ R++G+DPGL TG+G++++ G + + +G + +LA R+ ++Y G+ DVI++
Sbjct: 12 RPRRVLGVDPGLGITGYGVIELVGMSPKIIEAGVVRGRSGATLAARIGEIYAGIHDVIQS 71
Query: 63 WRPEEAAVEQVFVNKD-AVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
P E A+E+++ + D + +G AR +L+ A IPV YA +KK + G G
Sbjct: 72 LAPTELAIEELYSHYDRPRTAILMGHARGAILLAGHQAGIPVLSYASTQVKKLLTGNGRA 131
Query: 122 DKKQIHMMLKMLMPESFFK-GKDAADALAIAVCHAYHANSGYY 163
K Q+ + + + D ADALAIA+CH + + SG +
Sbjct: 132 PKDQMQNAVCRELKLAAPPEPPDVADALAIALCHIHLSRSGLH 174
>gi|71901780|ref|ZP_00683849.1| Crossover junction endodeoxyribonuclease RuvC [Xylella fastidiosa
Ann-1]
gi|71728463|gb|EAO30625.1| Crossover junction endodeoxyribonuclease RuvC [Xylella fastidiosa
Ann-1]
Length = 204
Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats.
Identities = 69/158 (43%), Positives = 99/158 (62%), Gaps = 1/158 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAG-DNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
RI+GIDPG +RTG G++DV V +V + S A RL QL GL+ VI+ +
Sbjct: 34 RILGIDPGSQRTGVGVIDVDEYGCSHHVYHAPLVLLGQSSFAGRLKQLLLGLSAVIEEYS 93
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+E A+E+VF++K+A + LKLGQAR +AI + L +PV EYA IK AV+G G DK+
Sbjct: 94 PKEVAIEKVFMSKNADSALKLGQARGVAISAVVLRDLPVHEYAARQIKLAVVGRGGADKQ 153
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGY 162
QI M+ +++ DAADALA+A+ HA+ + +
Sbjct: 154 QIQHMVGVMLNLQGRLQSDAADALAVAITHAHVSATAQ 191
>gi|269302405|gb|ACZ32505.1| crossover junction endodeoxyribonuclease RuvC [Chlamydophila
pneumoniae LPCoLN]
Length = 168
Score = 150 bits (379), Expect = 6e-35, Method: Composition-based stats.
Identities = 60/160 (37%), Positives = 86/160 (53%), Gaps = 4/160 (2%)
Query: 7 IIGIDPGLRRTGWGIVDVAGD-NLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
IIG+DPG G+ I+ V L S G I L R L+E L+ V+ + +P
Sbjct: 5 IIGVDPGTIVAGYAIIAVEQRYQLRPYSYGAIRLSSDMPLPMRYKTLFEQLSGVLDDTQP 64
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+E FVNK+ +T+KL AR I +L+ A IP+ EYAPN KKAV+G GH K+Q
Sbjct: 65 NAMVLETQFVNKNPQSTMKLAMARGIVLLAAAQRDIPIFEYAPNVAKKAVVGKGHASKRQ 124
Query: 126 IHMMLKMLMPESF---FKGKDAADALAIAVCHAYHANSGY 162
+ +M+ ++ +D ADA A+A+CH + A S
Sbjct: 125 VQVMVSKILNVPEVLHPSNEDIADAFALAICHTHVARSPL 164
>gi|118588335|ref|ZP_01545744.1| Holliday junction resolvase [Stappia aggregata IAM 12614]
gi|118439041|gb|EAV45673.1| Holliday junction resolvase [Stappia aggregata IAM 12614]
Length = 234
Score = 150 bits (379), Expect = 6e-35, Method: Composition-based stats.
Identities = 94/168 (55%), Positives = 130/168 (77%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M +IR++GIDPGLRRTGWG+++ G+ L F++SGT+ S ++SLA RL +L++GL++V+
Sbjct: 64 MTHAIRLLGIDPGLRRTGWGMIEATGNRLSFIASGTVTSDNKKSLAERLVELHDGLSEVV 123
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
+ P EAAVE FVNKDA ATLKLGQAR IA+L P+LA +PV+EYAPN +KK V+G GH
Sbjct: 124 RRHDPAEAAVEHTFVNKDAGATLKLGQARGIALLVPSLAGLPVAEYAPNLVKKTVVGTGH 183
Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
+K+QI M+K+LMP + F DAADALAIA+CHA H ++ ++A+
Sbjct: 184 AEKEQIRAMVKILMPRATFNSDDAADALAIAICHAQHRSNSTARLAAM 231
>gi|15891224|ref|NP_356896.1| Holliday junction resolvase [Agrobacterium tumefaciens str. C58]
gi|22096148|sp|Q8U9K4|RUVC_AGRT5 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|15159587|gb|AAK89681.1| Holliday Junction Resolvase RuvC [Agrobacterium tumefaciens str.
C58]
Length = 170
Score = 150 bits (379), Expect = 6e-35, Method: Composition-based stats.
Identities = 108/164 (65%), Positives = 136/164 (82%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M+K+IRIIGIDPGLRRTGWG++D G++L FV+SGT+ S LA RLCQL++GL +++
Sbjct: 1 MQKTIRIIGIDPGLRRTGWGVIDTLGNSLRFVASGTVTSDGDMDLASRLCQLHDGLAEIV 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
+ +P+EAAVEQ FVNKDAVATLKLGQAR IA+L PA A +PV EYAPN +KKAVIGVGH
Sbjct: 61 HSHQPDEAAVEQTFVNKDAVATLKLGQARGIAMLVPARAGLPVFEYAPNAVKKAVIGVGH 120
Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYK 164
G+K+QIHMMLK+LMP++ FKG DAADALAIA+CHA++ +
Sbjct: 121 GEKQQIHMMLKILMPKAEFKGNDAADALAIAICHAHNRGGDRMR 164
>gi|83816429|ref|YP_446766.1| Holliday junction resolvase [Salinibacter ruber DSM 13855]
gi|123726125|sp|Q2RZ65|RUVC_SALRD RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|83757823|gb|ABC45936.1| crossover junction endodeoxyribonuclease RuvC [Salinibacter ruber
DSM 13855]
Length = 179
Score = 150 bits (379), Expect = 6e-35, Method: Composition-based stats.
Identities = 58/154 (37%), Positives = 90/154 (58%), Gaps = 1/154 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ I+G+DPG R TG+G+VD +G + V++ TI RL Q+Y+ L DVI
Sbjct: 1 MIILGVDPGSRATGYGLVDPSGGDEHLVAADTIRLADTDDHPTRLKQIYDALVDVIDAHG 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+E AVE ++ + LKLG+A+A A+++ +PV++Y P +KK+V G G+ KK
Sbjct: 61 PDEFAVEMPVYGQNPQSMLKLGRAQAAAMMAALNRDLPVAQYTPKEVKKSVTGNGNASKK 120
Query: 125 QIHMMLKMLMPESFFKGK-DAADALAIAVCHAYH 157
Q+ M++ ++ D ADALAIA+CH
Sbjct: 121 QVGFMIESILSAREQTFAHDTADALAIALCHGNR 154
>gi|310778263|ref|YP_003966596.1| crossover junction endodeoxyribonuclease RuvC [Ilyobacter
polytropus DSM 2926]
gi|309747586|gb|ADO82248.1| crossover junction endodeoxyribonuclease RuvC [Ilyobacter
polytropus DSM 2926]
Length = 190
Score = 150 bits (379), Expect = 6e-35, Method: Composition-based stats.
Identities = 41/138 (29%), Positives = 75/138 (54%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+R++GIDPG G+GIVD +N V+ G I + ++ RL ++Y+ L +I+ ++
Sbjct: 1 MRVLGIDPGTATVGYGIVDFKNNNYDTVTYGCIYTDKDLPMSKRLEKIYDELYALIEEYK 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P AVE++F K+ + +GQAR + IL + + Y P +K + G G +KK
Sbjct: 61 PAHMAVEELFYFKNNKTVISVGQARGVIILCGEKQGLCLDSYTPLQVKMGITGYGKSEKK 120
Query: 125 QIHMMLKMLMPESFFKGK 142
Q+ +M++ ++ +
Sbjct: 121 QVQIMVQKILKLNELPEP 138
>gi|254456897|ref|ZP_05070325.1| crossover junction endodeoxyribonuclease RuvC [Campylobacterales
bacterium GD 1]
gi|207085689|gb|EDZ62973.1| crossover junction endodeoxyribonuclease RuvC [Campylobacterales
bacterium GD 1]
Length = 158
Score = 150 bits (379), Expect = 6e-35, Method: Composition-based stats.
Identities = 44/154 (28%), Positives = 78/154 (50%), Gaps = 2/154 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ I+GIDPG R G+ ++ + + + +G I + L F++ Q+ EG+ + K
Sbjct: 1 MIILGIDPGTRNMGYALISLEKGKISLIEAGLIKM-KAEELQFQIPQMAEGIDTIFKRHN 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
+E A+E +F + T+KL Q R +L EY +KKA+ G K+
Sbjct: 60 IDEVAMEDIFYAHNPATTIKLAQFRGAIMLKLLEVHGKFYEYTALQVKKALTGKAKAGKE 119
Query: 125 QIHMMLKMLMP-ESFFKGKDAADALAIAVCHAYH 157
Q+ M+K+L+ + K D +DA+A+A+ H+
Sbjct: 120 QVAYMVKILLNIKKEIKPLDISDAMAVAITHSQR 153
>gi|269120217|ref|YP_003308394.1| crossover junction endodeoxyribonuclease RuvC [Sebaldella
termitidis ATCC 33386]
gi|268614095|gb|ACZ08463.1| crossover junction endodeoxyribonuclease RuvC [Sebaldella
termitidis ATCC 33386]
Length = 192
Score = 150 bits (379), Expect = 7e-35, Method: Composition-based stats.
Identities = 38/138 (27%), Positives = 74/138 (53%), Gaps = 1/138 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ ++G+DPG G+ +++ + G + + + + RL ++Y+GL +IK W+
Sbjct: 1 MIVLGVDPGTAIVGYSVIEYVKSKYRILDYGCVYTDKDEDMPVRLEKIYDGLDGIIKIWK 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P++ A+E++F K+ +K+GQAR + L + + Y P +K + G G DKK
Sbjct: 61 PQDMAIEELFFFKNQKTVIKVGQARGVITLCGQKNCLDLYSYTPLQVKMGIAGYGRADKK 120
Query: 125 QIHMMLKMLMP-ESFFKG 141
QI M+K+++ + K
Sbjct: 121 QIQEMVKVILGMDEIPKP 138
>gi|226954181|ref|ZP_03824645.1| Holliday junction nuclease [Acinetobacter sp. ATCC 27244]
gi|294650205|ref|ZP_06727579.1| crossover junction endoribonuclease subunit C [Acinetobacter
haemolyticus ATCC 19194]
gi|226835050|gb|EEH67433.1| Holliday junction nuclease [Acinetobacter sp. ATCC 27244]
gi|292823911|gb|EFF82740.1| crossover junction endoribonuclease subunit C [Acinetobacter
haemolyticus ATCC 19194]
Length = 181
Score = 150 bits (379), Expect = 7e-35, Method: Composition-based stats.
Identities = 70/160 (43%), Positives = 102/160 (63%), Gaps = 2/160 (1%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
IIGIDPG R TG+GI++ G+ L FV +GTI + Q + RL +++ G+ ++K P
Sbjct: 4 IIGIDPGSRLTGYGIIEKDGNKLRFVDAGTIRTET-QEMPERLKRIFAGVERIVKFHGPT 62
Query: 67 EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
EAAVEQVF+ ++ + LKLGQAR AI + + V+EY IK++V+G G DK+Q+
Sbjct: 63 EAAVEQVFMAQNPDSALKLGQARGAAIAALVNLDLQVAEYTARQIKQSVVGYGAADKEQV 122
Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
MM+ L+ + DAADALA A+CHA+ + S K+A
Sbjct: 123 QMMVMRLLNLTIKPQADAADALAAAICHAHASGS-MTKLA 161
>gi|222086990|ref|YP_002545524.1| crossover junction endodeoxyribonuclease RuvC [Agrobacterium
radiobacter K84]
gi|254767453|sp|B9J9J2|RUVC_AGRRK RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|221724438|gb|ACM27594.1| crossover junction endodeoxyribonuclease RuvC [Agrobacterium
radiobacter K84]
Length = 170
Score = 150 bits (379), Expect = 7e-35, Method: Composition-based stats.
Identities = 109/167 (65%), Positives = 139/167 (83%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M+ +IRIIGIDPGLRRTGWG++D G++L FV+SGT+ S LA RLCQL++GL D++
Sbjct: 1 MQNTIRIIGIDPGLRRTGWGVIDTLGNSLRFVASGTVTSDGDMDLASRLCQLHDGLADIV 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
++P+EAAVEQ FVNKDAVATLKLGQAR IA+L PA A +PV+EYAPN +KKAVIGVGH
Sbjct: 61 HGYKPDEAAVEQTFVNKDAVATLKLGQARGIAMLVPARAGLPVAEYAPNAVKKAVIGVGH 120
Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
G+K+QIHMMLK+LMP++ FKG DAADALAIA+CHA++ + + A+
Sbjct: 121 GEKQQIHMMLKILMPKAEFKGNDAADALAIAICHAHNRGANRLRQAA 167
>gi|255319284|ref|ZP_05360501.1| crossover junction endodeoxyribonuclease RuvC [Acinetobacter
radioresistens SK82]
gi|262379731|ref|ZP_06072887.1| crossover junction endodeoxyribonuclease RuvC [Acinetobacter
radioresistens SH164]
gi|255303677|gb|EET82877.1| crossover junction endodeoxyribonuclease RuvC [Acinetobacter
radioresistens SK82]
gi|262299188|gb|EEY87101.1| crossover junction endodeoxyribonuclease RuvC [Acinetobacter
radioresistens SH164]
Length = 181
Score = 150 bits (379), Expect = 7e-35, Method: Composition-based stats.
Identities = 70/160 (43%), Positives = 102/160 (63%), Gaps = 2/160 (1%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
IIGIDPG R TG+GI++ G+ L F+ +GTI + Q + RL +++ G+ ++K P
Sbjct: 4 IIGIDPGSRLTGYGIIEKEGNKLRFIDAGTIRTES-QDMPERLKRIFAGIERIVKFHGPT 62
Query: 67 EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
EAAVEQVF+ ++ + LKLGQAR AI + + V+EY IK++V+G G DK+Q+
Sbjct: 63 EAAVEQVFMAQNPDSALKLGQARGAAIAALVNLDLQVAEYTARQIKQSVVGYGAADKEQV 122
Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
MM+ L+ S DAADALA A+CHA+ + S K+A
Sbjct: 123 QMMVMKLLNLSIRPQADAADALAAAICHAHASGS-MSKLA 161
>gi|282599693|ref|ZP_05971509.2| crossover junction endodeoxyribonuclease RuvC [Providencia
rustigianii DSM 4541]
gi|282568251|gb|EFB73786.1| crossover junction endodeoxyribonuclease RuvC [Providencia
rustigianii DSM 4541]
Length = 181
Score = 150 bits (379), Expect = 7e-35, Method: Composition-based stats.
Identities = 54/136 (39%), Positives = 86/136 (63%), Gaps = 1/136 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G L ++ SG I + V L RL ++Y G++++I ++P
Sbjct: 11 IILGIDPGSRITGYGVIRQQGRQLLYLGSGCIRTQV-DDLPSRLQRIYAGVSEIITQYQP 69
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ ++EQVF+ K+A + LKLGQAR +AI++ A IPV EYA +K+ V+G G +K Q
Sbjct: 70 DVLSIEQVFMAKNADSALKLGQARGVAIVAAANQNIPVFEYAARQVKQTVVGTGAAEKSQ 129
Query: 126 IHMMLKMLMPESFFKG 141
+ M+K ++ S
Sbjct: 130 VQHMVKSILKLSASPQ 145
>gi|154250387|ref|YP_001411212.1| crossover junction endodeoxyribonuclease RuvC [Fervidobacterium
nodosum Rt17-B1]
gi|171769405|sp|A7HNS2|RUVC_FERNB RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|154154323|gb|ABS61555.1| crossover junction endodeoxyribonuclease RuvC [Fervidobacterium
nodosum Rt17-B1]
Length = 166
Score = 150 bits (379), Expect = 7e-35, Method: Composition-based stats.
Identities = 41/136 (30%), Positives = 77/136 (56%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPG G+G+V+ G+ + +VS G I + + RL +Y + ++I+ +
Sbjct: 1 MRILGIDPGYGIVGYGVVEKLGNKIAYVSHGAIKTEKGEHFEDRLDYIYNQVNEIIEKYN 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
PE A+E ++ K+ + +G+AR + +L+ + IP E+ P+ +K V G G +K
Sbjct: 61 PELVAIESLYFYKNVKTAIYVGEARGVILLAIKHSNIPFVEFTPHQVKLTVTGYGRAEKT 120
Query: 125 QIHMMLKMLMPESFFK 140
QI ++K+L+ +
Sbjct: 121 QIQKVMKILLKLNEIP 136
>gi|92118983|ref|YP_578712.1| Holliday junction resolvase [Nitrobacter hamburgensis X14]
gi|91801877|gb|ABE64252.1| Holliday junction endonuclease RuvC [Nitrobacter hamburgensis X14]
Length = 178
Score = 150 bits (378), Expect = 8e-35, Method: Composition-based stats.
Identities = 90/164 (54%), Positives = 121/164 (73%)
Query: 2 RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
IRI+GIDPGLRRTGWG++D+ G+ L FV G++ + + +LA RL ++EGL V+
Sbjct: 11 SSPIRILGIDPGLRRTGWGVLDIEGNRLMFVGCGSVETREQMALASRLLAIHEGLGRVLD 70
Query: 62 NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
+RP EAA+EQ FVNKD VATLKLGQAR +A+L+PA+ I V+EYAPN +KK V+G GH
Sbjct: 71 EFRPAEAAIEQTFVNKDGVATLKLGQARGVAMLAPAMFGIVVAEYAPNQVKKTVVGAGHA 130
Query: 122 DKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
DK QI MLK+L+P++ K DAADALAIA+ HA+H + ++
Sbjct: 131 DKTQIQAMLKILLPKADPKSADAADALAIAITHAHHRGAAALRM 174
>gi|297588496|ref|ZP_06947139.1| crossover junction endoribonuclease subunit C [Finegoldia magna
ATCC 53516]
gi|297573869|gb|EFH92590.1| crossover junction endoribonuclease subunit C [Finegoldia magna
ATCC 53516]
Length = 164
Score = 150 bits (378), Expect = 8e-35, Method: Composition-based stats.
Identities = 42/136 (30%), Positives = 75/136 (55%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+R++GIDPG+ G+ I+D + + + G I + + L RL +Y + +I ++
Sbjct: 1 MRVLGIDPGIAIVGYSILDYDNNKIKCLEYGCITTSSKSPLPDRLSFIYNEMNKIIDEFQ 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
PE+ A E++F NK+ + + QAR + ILS + + EY P IK+AV+G G DK+
Sbjct: 61 PEDCAFEELFFNKNVKTAITVSQARGVEILSCINKNLNLYEYTPLQIKQAVVGYGRADKR 120
Query: 125 QIHMMLKMLMPESFFK 140
Q+ +K ++ +
Sbjct: 121 QVQETVKTILKFNDIP 136
>gi|332982457|ref|YP_004463898.1| crossover junction endodeoxyribonuclease RuvC [Mahella
australiensis 50-1 BON]
gi|332700135|gb|AEE97076.1| crossover junction endodeoxyribonuclease RuvC [Mahella
australiensis 50-1 BON]
Length = 162
Score = 150 bits (378), Expect = 8e-35, Method: Composition-based stats.
Identities = 48/136 (35%), Positives = 75/136 (55%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ ++GIDPGL G+G VD + L + G + + L RL +Y+ +T +I+ +
Sbjct: 1 MIVLGIDPGLATLGYGAVDYDKNKLKLIDYGVVTTQPDMPLPQRLKSIYDDVTALIERYE 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P AVE++F NK+A L +G AR +AIL+ A +PV EY P IK+ + G G K
Sbjct: 61 PRACAVEELFFNKNAKTALTIGHARGVAILAAANNAVPVYEYTPLQIKQGITGYGMAQKL 120
Query: 125 QIHMMLKMLMPESFFK 140
Q+ M+K+L+
Sbjct: 121 QVQRMVKLLLSMDDIP 136
>gi|144898112|emb|CAM74976.1| Crossover junction endodeoxyribonuclease [Magnetospirillum
gryphiswaldense MSR-1]
Length = 164
Score = 150 bits (378), Expect = 8e-35, Method: Composition-based stats.
Identities = 79/163 (48%), Positives = 112/163 (68%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+R++G+DPGLR TGWG++++ + L ++ GTI S + SLA RL QL+ G+ VI W
Sbjct: 1 MRVLGLDPGLRITGWGMIEMIDNRLRYLGDGTIRSDDKLSLAERLGQLHRGVLQVIAAWS 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ A VEQ FVNK+ +TLKLGQAR + +L+PALA + V EYAP +K+AV+G G K+
Sbjct: 61 PDAAGVEQTFVNKNPESTLKLGQARGVVLLAPALAGLEVGEYAPTQVKQAVVGTGRAAKE 120
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
Q+ MM++ L+P DAADALA+A+CHA+HA + A
Sbjct: 121 QVGMMVRTLLPGCLVTSADAADALAVAICHAHHAATARRLKAG 163
>gi|262278863|ref|ZP_06056648.1| crossover junction endodeoxyribonuclease RuvC [Acinetobacter
calcoaceticus RUH2202]
gi|262259214|gb|EEY77947.1| crossover junction endodeoxyribonuclease RuvC [Acinetobacter
calcoaceticus RUH2202]
Length = 181
Score = 150 bits (378), Expect = 8e-35, Method: Composition-based stats.
Identities = 66/154 (42%), Positives = 99/154 (64%), Gaps = 1/154 (0%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
IIGIDPG R TG+GI++ G L F+ +GTI + ++ + RL +++ G+ ++K P
Sbjct: 4 IIGIDPGSRLTGYGIIEKDGSKLRFIDAGTIRTETKE-MPERLKRIFAGIERIVKFHGPT 62
Query: 67 EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
EAAVEQVF+ ++ + LKLGQAR AI + + V+EY IK++V+G G DK+Q+
Sbjct: 63 EAAVEQVFMAQNPDSALKLGQARGAAIAALVNLDLQVAEYTARQIKQSVVGYGAADKEQV 122
Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
MM+ L+ + DAADALA A+CHA+ + S
Sbjct: 123 QMMVMRLLNLTIKPQADAADALAAAICHAHASGS 156
>gi|152996210|ref|YP_001341045.1| crossover junction endodeoxyribonuclease RuvC [Marinomonas sp.
MWYL1]
gi|150837134|gb|ABR71110.1| crossover junction endodeoxyribonuclease RuvC [Marinomonas sp.
MWYL1]
Length = 185
Score = 150 bits (378), Expect = 9e-35, Method: Composition-based stats.
Identities = 69/161 (42%), Positives = 106/161 (65%), Gaps = 2/161 (1%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M + RI+ IDPG R TG+GIVDV +VSSG I ++L+ RL +++ ++ ++
Sbjct: 1 MATT-RILAIDPGSRITGFGIVDVTNGKSIYVSSGCIRLP-DEALSVRLKYIFQNVSALL 58
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
++P E A+E+VF+ K+A + LKLGQAR AI++ +L + V EYA +K++V+G G+
Sbjct: 59 DEYQPNEFAIEEVFLAKNANSALKLGQARGAAIVAASLKELIVHEYAARRVKQSVVGNGN 118
Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSG 161
DK Q+ MM+++L+ + DAADALAIA+CHA SG
Sbjct: 119 ADKAQVQMMVQLLLNITSKPQADAADALAIALCHANTRTSG 159
>gi|188533630|ref|YP_001907427.1| Holliday junction resolvase [Erwinia tasmaniensis Et1/99]
gi|238691996|sp|B2VJ93|RUVC_ERWT9 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|188028672|emb|CAO96534.1| Crossover junction endodeoxyribonuclease [Erwinia tasmaniensis
Et1/99]
Length = 173
Score = 150 bits (378), Expect = 9e-35, Method: Composition-based stats.
Identities = 53/136 (38%), Positives = 83/136 (61%), Gaps = 1/136 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G L ++ SG I + V L RL +Y G++++I ++P
Sbjct: 3 IILGIDPGSRITGYGVIRQTGRQLTYLGSGCIRTSV-TDLPSRLKLIYAGVSEIITQFQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
E A+EQVF+ K+A + LKLGQAR AI++ +PV EYA +K+ V+G+G +K Q
Sbjct: 62 EYFAIEQVFMAKNADSALKLGQARGAAIVAAVNQDLPVFEYAARQVKQTVVGIGSAEKSQ 121
Query: 126 IHMMLKMLMPESFFKG 141
+ M++ L+
Sbjct: 122 VQHMVRTLLKLPANPQ 137
>gi|158422137|ref|YP_001523429.1| Holliday junction resolvase [Azorhizobium caulinodans ORS 571]
gi|172048035|sp|A8IM96|RUVC_AZOC5 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|158329026|dbj|BAF86511.1| crossover junction endodeoxyribonuclease [Azorhizobium caulinodans
ORS 571]
Length = 169
Score = 150 bits (378), Expect = 9e-35, Method: Composition-based stats.
Identities = 79/168 (47%), Positives = 115/168 (68%), Gaps = 1/168 (0%)
Query: 1 MRKSI-RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDV 59
M + RIIG+DPGLRRTGWG+++ G L +V+ GTI+ +A RL +L+ GL +V
Sbjct: 1 MTNGMIRIIGLDPGLRRTGWGVIEAQGTRLTYVACGTILPPENAPMAERLAELHRGLAEV 60
Query: 60 IKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVG 119
+ P+EAAVE+ FVN + +TLKLGQAR + +L+PA A + V+EYAP +KK V+G G
Sbjct: 61 LARHAPDEAAVEETFVNMNPSSTLKLGQARGVVMLAPAQAGLSVAEYAPLLVKKTVVGAG 120
Query: 120 HGDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
+K QI MM+ +L+P++ + +DAADALA+AV HA+H + A+
Sbjct: 121 RAEKAQIRMMIGVLLPKATPQTEDAADALAVAVTHAHHRGPAALRRAA 168
>gi|169633696|ref|YP_001707432.1| Holliday junction resolvase [Acinetobacter baumannii SDF]
gi|169796193|ref|YP_001713986.1| Holliday junction resolvase [Acinetobacter baumannii AYE]
gi|184157877|ref|YP_001846216.1| Holliday junction resolvase [Acinetobacter baumannii ACICU]
gi|213157073|ref|YP_002319118.1| crossover junction endodeoxyribonuclease RuvC [Acinetobacter
baumannii AB0057]
gi|215483648|ref|YP_002325869.1| crossover junction endodeoxyribonuclease RuvC [Acinetobacter
baumannii AB307-0294]
gi|239502245|ref|ZP_04661555.1| Holliday junction resolvase [Acinetobacter baumannii AB900]
gi|260555244|ref|ZP_05827465.1| crossover junction endodeoxyribonuclease RuvC [Acinetobacter
baumannii ATCC 19606]
gi|301347625|ref|ZP_07228366.1| Holliday junction resolvase [Acinetobacter baumannii AB056]
gi|301510310|ref|ZP_07235547.1| Holliday junction resolvase [Acinetobacter baumannii AB058]
gi|301596868|ref|ZP_07241876.1| Holliday junction resolvase [Acinetobacter baumannii AB059]
gi|332850550|ref|ZP_08432826.1| crossover junction endodeoxyribonuclease RuvC [Acinetobacter
baumannii 6013150]
gi|332865760|ref|ZP_08436555.1| crossover junction endodeoxyribonuclease RuvC [Acinetobacter
baumannii 6013113]
gi|332872519|ref|ZP_08440489.1| crossover junction endodeoxyribonuclease RuvC [Acinetobacter
baumannii 6014059]
gi|226725465|sp|B7H3S1|RUVC_ACIB3 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|226725466|sp|B7I4I7|RUVC_ACIB5 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|238685510|sp|A3M4U7|RUVC_ACIBT RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|238688095|sp|B0VCA5|RUVC_ACIBY RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|238688243|sp|B0VR37|RUVC_ACIBS RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|238690999|sp|B2HYY2|RUVC_ACIBC RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|169149120|emb|CAM86997.1| holliday junction nuclease [Acinetobacter baumannii AYE]
gi|169152488|emb|CAP01456.1| holliday junction nuclease [Acinetobacter baumannii]
gi|183209471|gb|ACC56869.1| Holliday junction resolvasome, endonuclease subunit [Acinetobacter
baumannii ACICU]
gi|193077159|gb|ABO11941.2| holliday junction nuclease [Acinetobacter baumannii ATCC 17978]
gi|213056233|gb|ACJ41135.1| crossover junction endodeoxyribonuclease RuvC [Acinetobacter
baumannii AB0057]
gi|213987249|gb|ACJ57548.1| crossover junction endodeoxyribonuclease RuvC [Acinetobacter
baumannii AB307-0294]
gi|260411786|gb|EEX05083.1| crossover junction endodeoxyribonuclease RuvC [Acinetobacter
baumannii ATCC 19606]
gi|322508194|gb|ADX03648.1| ruvC [Acinetobacter baumannii 1656-2]
gi|323517282|gb|ADX91663.1| Holliday junction resolvase [Acinetobacter baumannii TCDC-AB0715]
gi|323517794|gb|ADX92175.1| Holliday junction resolvase [Acinetobacter baumannii TCDC-AB0715]
gi|332730612|gb|EGJ61926.1| crossover junction endodeoxyribonuclease RuvC [Acinetobacter
baumannii 6013150]
gi|332735101|gb|EGJ66185.1| crossover junction endodeoxyribonuclease RuvC [Acinetobacter
baumannii 6013113]
gi|332739325|gb|EGJ70182.1| crossover junction endodeoxyribonuclease RuvC [Acinetobacter
baumannii 6014059]
Length = 181
Score = 150 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 68/154 (44%), Positives = 98/154 (63%), Gaps = 1/154 (0%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
IIGIDPG R TG+GI++ G L FV +GTI + Q + RL +++ G+ ++K P
Sbjct: 4 IIGIDPGSRLTGYGIIEKDGSKLRFVDAGTIRTET-QEMPERLKRIFAGVERIVKFHGPT 62
Query: 67 EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
EAAVEQVF+ ++ + LKLGQAR AI + + V+EY IK++V+G G DK+Q+
Sbjct: 63 EAAVEQVFMAQNPDSALKLGQARGAAIAALVNLDLQVAEYTARQIKQSVVGYGAADKEQV 122
Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
MM+ L+ + DAADALA A+CHA+ + S
Sbjct: 123 QMMVMRLLNLTIKPQADAADALAAAICHAHASGS 156
>gi|224583597|ref|YP_002637395.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|254767484|sp|C0Q2F1|RUVC_SALPC RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|224468124|gb|ACN45954.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|322714951|gb|EFZ06522.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
serovar Choleraesuis str. A50]
Length = 173
Score = 150 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 52/136 (38%), Positives = 83/136 (61%), Gaps = 1/136 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G L ++ SG I + L RL +Y G+T++I ++P
Sbjct: 3 IILGIDPGSRITGYGVIRQVGRQLTYLGSGCIRT-KVDDLPSRLKLIYAGVTEIITQFQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQVF+ K+A + LKLGQAR +AI++ +PV EYA +K+ V+G+G +K Q
Sbjct: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121
Query: 126 IHMMLKMLMPESFFKG 141
+ M++ L+
Sbjct: 122 VQHMVRTLLKLPANPQ 137
>gi|189499517|ref|YP_001958987.1| crossover junction endodeoxyribonuclease RuvC [Chlorobium
phaeobacteroides BS1]
gi|189494958|gb|ACE03506.1| crossover junction endodeoxyribonuclease RuvC [Chlorobium
phaeobacteroides BS1]
Length = 186
Score = 150 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 58/163 (35%), Positives = 80/163 (49%), Gaps = 2/163 (1%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
+IGIDPG +TG+GIV GD VS G I RQ + R+ +Y+ L +I RP
Sbjct: 2 VIGIDPGSVKTGYGIVRSEGDTFSLVSCGVIRLSSRQCIPERIKIIYDTLEALIAQHRPA 61
Query: 67 EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
A+E +VN++A + LKLGQ R + + EYAP +KK + G G K Q+
Sbjct: 62 RLALETAYVNRNAQSALKLGQVRGAIVALAMNTGTGLHEYAPREVKKMLTGRGAASKDQV 121
Query: 127 HMMLKMLMP-ESFFKGKDAADALAIAVCH-AYHANSGYYKIAS 167
M + + K D DAL IA+C Y G + A
Sbjct: 122 AYMARHFLNVVEPIKPHDITDALGIALCDLIYEGKKGSGRTAG 164
>gi|15618531|ref|NP_224817.1| Holliday junction resolvase [Chlamydophila pneumoniae CWL029]
gi|15836153|ref|NP_300677.1| Holliday junction resolvase [Chlamydophila pneumoniae J138]
gi|16752419|ref|NP_444678.1| Holliday junction resolvase [Chlamydophila pneumoniae AR39]
gi|33241978|ref|NP_876919.1| Holliday junction resolvase [Chlamydophila pneumoniae TW-183]
gi|6685954|sp|Q9Z7T3|RUVC_CHLPN RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|4376918|gb|AAD18760.1| Crossover Junction Endonuclease [Chlamydophila pneumoniae CWL029]
gi|7189061|gb|AAF38009.1| Holliday junction resolvase [Chlamydophila pneumoniae AR39]
gi|8978993|dbj|BAA98828.1| crossover junction endonuclease [Chlamydophila pneumoniae J138]
gi|33236488|gb|AAP98576.1| RuvC [Chlamydophila pneumoniae TW-183]
Length = 168
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 59/160 (36%), Positives = 85/160 (53%), Gaps = 4/160 (2%)
Query: 7 IIGIDPGLRRTGWGIVDVAGD-NLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
IIG+DPG G+ I+ V L S G I L R L+E L+ V+ + +P
Sbjct: 5 IIGVDPGTIVAGYAIIAVEQRYQLRPYSYGAIRLSSDMPLPMRYKTLFEQLSGVLDDTQP 64
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+E FVNK+ +T+KL AR I +L+ A I + EYAPN KKAV+G GH K+Q
Sbjct: 65 NAMVLETQFVNKNPQSTMKLAMARGIVLLAAAQRDILIFEYAPNVAKKAVVGKGHASKRQ 124
Query: 126 IHMMLKMLMPESF---FKGKDAADALAIAVCHAYHANSGY 162
+ +M+ ++ +D ADA A+A+CH + A S
Sbjct: 125 VQVMVSKILNVPEVLHPSNEDIADAFALAICHTHVARSPL 164
>gi|156933559|ref|YP_001437475.1| Holliday junction resolvase [Cronobacter sakazakii ATCC BAA-894]
gi|166233191|sp|A7MEA1|RUVC_ENTS8 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|156531813|gb|ABU76639.1| hypothetical protein ESA_01379 [Cronobacter sakazakii ATCC BAA-894]
Length = 173
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 54/136 (39%), Positives = 84/136 (61%), Gaps = 1/136 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G L ++ SG I + V L RL +Y G++++I +RP
Sbjct: 3 IILGIDPGSRVTGYGVIRQTGRQLTYLGSGCIRTSV-TDLPSRLKLIYAGVSEIITQFRP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQVF+ K+A + LKLGQAR AI++ +PV EYA +K+ V+G+G +K Q
Sbjct: 62 DYFAIEQVFMAKNADSALKLGQARGAAIVAAVNHDLPVFEYAARQVKQTVVGIGSAEKSQ 121
Query: 126 IHMMLKMLMPESFFKG 141
+ M++ L+ S
Sbjct: 122 VQHMVRTLLKLSANPQ 137
>gi|319957848|ref|YP_004169111.1| holliday junction endonuclease ruvc [Nitratifractor salsuginis DSM
16511]
gi|319420252|gb|ADV47362.1| Holliday junction endonuclease RuvC [Nitratifractor salsuginis DSM
16511]
Length = 158
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 48/154 (31%), Positives = 73/154 (47%), Gaps = 2/154 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ I+GIDPG R G+ + + + +G + L ++ +L EGL ++K
Sbjct: 1 MVIMGIDPGSRNLGYCFLHYERGKMELLEAGLLKIAPGT-LQEQIVELAEGLDLLLKKQH 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+E A+E +F + LKL Q R L EY P +KKA+ G G K+
Sbjct: 60 PDEVAIEDIFYAFNPKTVLKLAQFRGALSLKVLQEVGYFYEYTPLQVKKALTGNGKAAKE 119
Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYH 157
Q+ M+K L+ K D DA+AIA+ HA
Sbjct: 120 QVAFMVKRLLGIRREIKPLDITDAMAIAITHAQR 153
>gi|34558502|ref|NP_908317.1| Holliday junction resolvase [Wolinella succinogenes DSM 1740]
gi|44888363|sp|Q7M7L1|RUVC_WOLSU RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|34481796|emb|CAE11217.1| CROSSOVER JUNCTION ENDODEOXYRIBONUCLEASE [Wolinella succinogenes]
Length = 162
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 49/159 (30%), Positives = 75/159 (47%), Gaps = 3/159 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+ I+GIDPG R G+ I+ V +G I ++L ++ + EG+ V+KN
Sbjct: 1 MNILGIDPGSRNCGYAILHHDPKKGNRLVEAGLIK-IKERTLQHQILEFVEGIDLVLKNH 59
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
+E A+E +F + +KL Q R L EY P +KKA+ G G DK
Sbjct: 60 SIDEVAIEDIFYAYNPKTVIKLAQFRGALSLKILQDLGNFYEYTPLQVKKALTGHGKADK 119
Query: 124 KQIHMMLKMLMPES-FFKGKDAADALAIAVCHAYHANSG 161
Q+ M+K L+ K D DA+A+A+ H+ G
Sbjct: 120 SQVAFMVKRLLGLKGEIKPLDITDAIAVAITHSQRIKLG 158
>gi|120602035|ref|YP_966435.1| Holliday junction resolvase [Desulfovibrio vulgaris DP4]
gi|166233190|sp|A1VC42|RUVC_DESVV RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|120562264|gb|ABM28008.1| Holliday junction endonuclease RuvC [Desulfovibrio vulgaris DP4]
Length = 166
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 64/167 (38%), Positives = 90/167 (53%), Gaps = 3/167 (1%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M S+ +IGIDPG + TGWGIV A L V+ G I A RL LY L DV+
Sbjct: 1 MAASVTVIGIDPGSQCTGWGIVREASGVLTLVNCGAIR-PKGADFAARLGDLYRQLADVV 59
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
+ P+EAAVE V ++ LKLGQAR + + + A +PV +Y P+ IKKA++G G
Sbjct: 60 RAHTPDEAAVEDVHAAQNVATALKLGQARGVVVAACAAHGVPVIDYRPSVIKKALVGTGR 119
Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
+K+Q+ M+ ++ D DALA A+CH ++A
Sbjct: 120 AEKEQVGYMVGQVLGVRPDWKLDTGDALAAAICHLNQRR--LTRLAG 164
>gi|218659656|ref|ZP_03515586.1| Holliday junction resolvase [Rhizobium etli IE4771]
Length = 169
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 110/166 (66%), Positives = 135/166 (81%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M+ +IRI+GIDPGLRRTGWGI+D G++L FV+SGT+ S LA RLCQL++GL +V+
Sbjct: 1 MQNTIRIVGIDPGLRRTGWGIIDTLGNSLRFVASGTVTSDGDMDLASRLCQLHDGLAEVV 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
++P+EAAVEQ FVNKDAVATLKLGQAR IA+L PA A + VSEYAPN +KKAVIGVGH
Sbjct: 61 HAYKPDEAAVEQTFVNKDAVATLKLGQARGIAMLVPARAGLQVSEYAPNAVKKAVIGVGH 120
Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
G+K QIHMMLK+LMP+ FKG DAADALAIA+CHA++ S + A
Sbjct: 121 GEKHQIHMMLKILMPKVEFKGDDAADALAIAICHAHNRGSNRMRQA 166
>gi|293608303|ref|ZP_06690606.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|299770453|ref|YP_003732479.1| Holliday junction resolvase [Acinetobacter sp. DR1]
gi|292828876|gb|EFF87238.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|298700541|gb|ADI91106.1| Holliday junction resolvase [Acinetobacter sp. DR1]
gi|325121963|gb|ADY81486.1| Holliday junction nuclease [Acinetobacter calcoaceticus PHEA-2]
Length = 181
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 68/154 (44%), Positives = 98/154 (63%), Gaps = 1/154 (0%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
IIGIDPG R TG+GI++ G L FV +GTI + Q + RL +++ G+ ++K P
Sbjct: 4 IIGIDPGSRLTGYGIIEKDGSKLRFVDAGTIRTET-QEMPERLKRIFAGVERIVKFHGPT 62
Query: 67 EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
EAAVEQVF+ ++ + LKLGQAR AI + + V+EY IK++V+G G DK+Q+
Sbjct: 63 EAAVEQVFMAQNPDSALKLGQARGAAIAALVNLDLQVAEYTARQIKQSVVGYGAADKEQV 122
Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
MM+ L+ + DAADALA A+CHA+ + S
Sbjct: 123 QMMVMRLLNLTIKPQSDAADALAAAICHAHASGS 156
>gi|212711937|ref|ZP_03320065.1| hypothetical protein PROVALCAL_03012 [Providencia alcalifaciens DSM
30120]
gi|212685459|gb|EEB44987.1| hypothetical protein PROVALCAL_03012 [Providencia alcalifaciens DSM
30120]
Length = 173
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 54/136 (39%), Positives = 86/136 (63%), Gaps = 1/136 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G L ++ SG I + V L RL ++Y G++++I ++P
Sbjct: 3 IILGIDPGSRITGYGVIRQQGRQLLYLGSGCIRTQV-DDLPSRLQRIYAGVSEIITQYQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ ++EQVF+ K+A + LKLGQAR +AI++ A IPV EYA +K+ V+G G +K Q
Sbjct: 62 DVLSIEQVFMAKNADSALKLGQARGVAIVAAANQNIPVFEYAARQVKQTVVGTGSAEKSQ 121
Query: 126 IHMMLKMLMPESFFKG 141
+ M+K ++ S
Sbjct: 122 VQHMVKSILKLSASPQ 137
>gi|190893291|ref|YP_001979833.1| crossover holliday junction endodeoxyribonuclease [Rhizobium etli
CIAT 652]
gi|238692540|sp|B3PYZ1|RUVC_RHIE6 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|190698570|gb|ACE92655.1| crossover holliday junction endodeoxyribonuclease protein
[Rhizobium etli CIAT 652]
gi|327194144|gb|EGE61014.1| crossover holliday junction endodeoxyribonuclease protein
[Rhizobium etli CNPAF512]
Length = 169
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 110/166 (66%), Positives = 135/166 (81%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M+ +IRI+GIDPGLRRTGWGI+D G++L FV+SGT+ S LA RLCQL++GL +V+
Sbjct: 1 MQNTIRIVGIDPGLRRTGWGIIDTLGNSLRFVASGTVTSDGDMDLASRLCQLHDGLAEVV 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
++P+EAAVEQ FVNKDAVATLKLGQAR IA+L PA A + VSEYAPN +KKAVIGVGH
Sbjct: 61 HAYKPDEAAVEQTFVNKDAVATLKLGQARGIAMLVPARAGLHVSEYAPNAVKKAVIGVGH 120
Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
G+K QIHMMLK+LMP+ FKG DAADALAIA+CHA++ S + A
Sbjct: 121 GEKHQIHMMLKILMPKVEFKGDDAADALAIAICHAHNRGSNRMRQA 166
>gi|257063439|ref|YP_003143111.1| crossover junction endodeoxyribonuclease RuvC [Slackia
heliotrinireducens DSM 20476]
gi|256791092|gb|ACV21762.1| crossover junction endodeoxyribonuclease RuvC [Slackia
heliotrinireducens DSM 20476]
Length = 165
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 44/137 (32%), Positives = 71/137 (51%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
I+GIDPGL TGWG++ G L V+ G I + L RL +L++ + V+K + P
Sbjct: 9 ILGIDPGLANTGWGVIRQRGPRLSCVAYGCISTSADMDLPSRLLKLHDQMELVVKRFEPT 68
Query: 67 EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
+E ++ + A + QAR +++ A + + E+ P IK AV+G G+ DK Q+
Sbjct: 69 CLGIETIWFGANVTAGILTSQARGAVLVACASQGLSIGEFTPKQIKLAVVGEGNSDKMQV 128
Query: 127 HMMLKMLMPESFFKGKD 143
M+K L+ D
Sbjct: 129 QYMVKQLLSLDDPPHPD 145
>gi|62180476|ref|YP_216893.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
gi|81309668|sp|Q57N99|RUVC_SALCH RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|62128109|gb|AAX65812.1| Holliday junction nuclease [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
Length = 173
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 51/136 (37%), Positives = 82/136 (60%), Gaps = 1/136 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G L ++ SG I + L RL +Y G+T++I ++P
Sbjct: 3 IILGIDPGSRITGYGVIRQVGRQLTYLGSGCIRT-KVDDLPSRLKLIYAGVTEIITQFQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQVF+ K+A + LKLGQ R +AI++ +PV EYA +K+ V+G+G +K Q
Sbjct: 62 DYFAIEQVFMAKNADSALKLGQVRGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121
Query: 126 IHMMLKMLMPESFFKG 141
+ M++ L+
Sbjct: 122 VQHMVRTLLKLPANPQ 137
>gi|257790727|ref|YP_003181333.1| crossover junction endodeoxyribonuclease RuvC [Eggerthella lenta
DSM 2243]
gi|257474624|gb|ACV54944.1| crossover junction endodeoxyribonuclease RuvC [Eggerthella lenta
DSM 2243]
Length = 192
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 48/144 (33%), Positives = 77/144 (53%), Gaps = 1/144 (0%)
Query: 1 MRKSIR-IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDV 59
M ++ R I+GIDPGL TGWGIV+ G L + G + + LA RL +++E + V
Sbjct: 1 MARTERTILGIDPGLANTGWGIVEQRGPRLACTAYGCVSTAKDLPLAQRLRKIHEQMAAV 60
Query: 60 IKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVG 119
I + P +E V+ + + GQAR A+++ A + V E++P+ IK AV+G G
Sbjct: 61 IARFEPACVGIETVWFGVNVQSAFATGQARGAALVACAERDLEVLEFSPSQIKLAVVGTG 120
Query: 120 HGDKKQIHMMLKMLMPESFFKGKD 143
+K Q+ M++ L+ D
Sbjct: 121 SAEKDQVQYMVRQLLALEDIPRPD 144
>gi|332716454|ref|YP_004443920.1| crossover junction endodeoxyribonuclease RuvC [Agrobacterium sp.
H13-3]
gi|325063139|gb|ADY66829.1| crossover junction endodeoxyribonuclease RuvC [Agrobacterium sp.
H13-3]
Length = 170
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 108/159 (67%), Positives = 135/159 (84%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M+K+IRIIGIDPGLRRTGWG+++ G++L FV+SGT+ S LA RLCQL++GL D +
Sbjct: 1 MQKTIRIIGIDPGLRRTGWGVIETFGNSLRFVASGTVTSDGDMDLASRLCQLHDGLADTV 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
+++P+EAAVEQ FVNKDAVATLKLGQAR IA+L PA A +PV EYAPN +KKAVIGVGH
Sbjct: 61 HSYQPDEAAVEQTFVNKDAVATLKLGQARGIAMLVPARAGLPVFEYAPNAVKKAVIGVGH 120
Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHAN 159
G+K+QIHMMLK+LMP++ FKG DAADALAIA+CHA++
Sbjct: 121 GEKQQIHMMLKILMPKAEFKGNDAADALAIAICHAHNRG 159
>gi|161502988|ref|YP_001570100.1| Holliday junction resolvase [Salmonella enterica subsp. arizonae
serovar 62:z4,z23:-- str. RSK2980]
gi|189046077|sp|A9MND5|RUVC_SALAR RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|160864335|gb|ABX20958.1| hypothetical protein SARI_01050 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 173
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 52/136 (38%), Positives = 83/136 (61%), Gaps = 1/136 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G L ++ SG I + L RL +Y G+T++I ++P
Sbjct: 3 IILGIDPGSRITGYGVIRQVGRQLTYLGSGCIRT-KVDDLPSRLKLIYAGVTEIITQFQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQVF+ K+A + LKLGQAR +AI++ +PV EYA +K+ V+G+G +K Q
Sbjct: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNRELPVFEYAARQVKQTVVGIGSAEKSQ 121
Query: 126 IHMMLKMLMPESFFKG 141
+ M++ L+
Sbjct: 122 VQHMVRTLLKLPANPQ 137
>gi|218460451|ref|ZP_03500542.1| Holliday junction resolvase [Rhizobium etli Kim 5]
Length = 169
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 110/166 (66%), Positives = 135/166 (81%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M+ +IRI+GIDPGLRRTGWGI+D G++L FV+SGT+ S LA RLCQL++GL +V+
Sbjct: 1 MQNTIRIVGIDPGLRRTGWGIIDTLGNSLRFVASGTVTSDGDMDLASRLCQLHDGLAEVV 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
++P+EAAVEQ FVNKDAVATLKLGQAR IA+L PA A + VSEYAPN +KKAVIGVGH
Sbjct: 61 HAYKPDEAAVEQTFVNKDAVATLKLGQARGIAMLVPARAGMQVSEYAPNAVKKAVIGVGH 120
Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
G+K QIHMMLK+LMP+ FKG DAADALAIA+CHA++ S + A
Sbjct: 121 GEKHQIHMMLKILMPKVEFKGDDAADALAIAICHAHNRGSNRMRQA 166
>gi|332993890|gb|AEF03945.1| Holliday junction resolvase [Alteromonas sp. SN2]
Length = 172
Score = 149 bits (376), Expect = 1e-34, Method: Composition-based stats.
Identities = 69/164 (42%), Positives = 102/164 (62%), Gaps = 2/164 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ I+GIDPG R TG+G+++ L +V+SG I L RL +Y G++D+I+ +
Sbjct: 1 MVILGIDPGSRVTGYGVIERKQGKLVYVASGCIRVGT-ADLPSRLANIYTGISDIIRQYN 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P + A+EQVF+ K+ + LKLGQAR AI++ +PV+EY+ IK+AV+G G DK
Sbjct: 60 PAQFAIEQVFMAKNPDSALKLGQARGAAIVAATQGELPVAEYSARQIKQAVVGKGSADKT 119
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
Q+ M+K L+ S DAADALA+A+CHA+ S +A Q
Sbjct: 120 QVQHMVKHLLSLSGTPQADAADALAVALCHAHTEQS-LINMAGQ 162
>gi|254465647|ref|ZP_05079058.1| crossover junction endodeoxyribonuclease RuvC [Rhodobacterales
bacterium Y4I]
gi|206686555|gb|EDZ47037.1| crossover junction endodeoxyribonuclease RuvC [Rhodobacterales
bacterium Y4I]
Length = 165
Score = 149 bits (376), Expect = 1e-34, Method: Composition-based stats.
Identities = 77/161 (47%), Positives = 111/161 (68%), Gaps = 1/161 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPGLR GWG+++ G L V++G + L RL L+ +T++I+ +
Sbjct: 1 MRILGIDPGLRNLGWGVIESRGTRLSHVANGVC-TSDGDDLGERLLSLHNQVTEIIEAFA 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P++AA+EQ FVNKD TLKLGQAR +A+L+ A A +PV EYAPN +KK V+GVGH +K+
Sbjct: 60 PDQAAIEQTFVNKDGAGTLKLGQARGVALLTLAKAGLPVGEYAPNRVKKTVVGVGHAEKE 119
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
Q+ M+K+ +P K DAADALAIA+CHAY+ + ++
Sbjct: 120 QVMHMVKLQLPGCLPKNTDAADALAIAICHAYYRGTQQRQL 160
>gi|209550793|ref|YP_002282710.1| Holliday junction resolvase [Rhizobium leguminosarum bv. trifolii
WSM2304]
gi|226698762|sp|B5ZP76|RUVC_RHILW RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|209536549|gb|ACI56484.1| crossover junction endodeoxyribonuclease RuvC [Rhizobium
leguminosarum bv. trifolii WSM2304]
Length = 169
Score = 149 bits (376), Expect = 1e-34, Method: Composition-based stats.
Identities = 110/166 (66%), Positives = 135/166 (81%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M+ +IRI+GIDPGLRRTGWGI+D G++L FV+SGT+ S LA RLCQL++GL +V+
Sbjct: 1 MQNTIRIVGIDPGLRRTGWGIIDTLGNSLRFVASGTVTSDGDMDLASRLCQLHDGLAEVV 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
++P+EAAVEQ FVNKDAVATLKLGQAR IA+L PA A + VSEYAPN +KKAVIGVGH
Sbjct: 61 HTYKPDEAAVEQTFVNKDAVATLKLGQARGIAMLVPARAGLRVSEYAPNAVKKAVIGVGH 120
Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
G+K QIHMMLK+LMP+ FKG DAADALAIA+CHA++ S + A
Sbjct: 121 GEKHQIHMMLKILMPKVEFKGDDAADALAIAICHAHNRGSNRMREA 166
>gi|261340248|ref|ZP_05968106.1| crossover junction endodeoxyribonuclease RuvC [Enterobacter
cancerogenus ATCC 35316]
gi|288317333|gb|EFC56271.1| crossover junction endodeoxyribonuclease RuvC [Enterobacter
cancerogenus ATCC 35316]
Length = 173
Score = 149 bits (376), Expect = 1e-34, Method: Composition-based stats.
Identities = 51/136 (37%), Positives = 83/136 (61%), Gaps = 1/136 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G L ++ SG I + L RL +Y G++++I ++P
Sbjct: 3 IILGIDPGSRITGYGVIRQVGRQLTYLGSGCIRT-KVDDLPSRLKLIYAGVSEIITQFQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQVF+ K+A + LKLGQAR +AI++ +PV EYA +K+ V+G+G +K Q
Sbjct: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQDLPVFEYAARQVKQTVVGIGSAEKSQ 121
Query: 126 IHMMLKMLMPESFFKG 141
+ M++ L+
Sbjct: 122 VQHMVRTLLKLPANPQ 137
>gi|326795233|ref|YP_004313053.1| Crossover junction endodeoxyribonuclease ruvC [Marinomonas
mediterranea MMB-1]
gi|326545997|gb|ADZ91217.1| Crossover junction endodeoxyribonuclease ruvC [Marinomonas
mediterranea MMB-1]
Length = 185
Score = 149 bits (376), Expect = 1e-34, Method: Composition-based stats.
Identities = 68/156 (43%), Positives = 100/156 (64%), Gaps = 1/156 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
RI+ IDPG R TG+G++D +VSSG + +LA RL ++E ++++I + P
Sbjct: 3 RILAIDPGSRITGYGVIDSKNGKTTYVSSGCVRLP-DANLAVRLRVIFESVSELISQFSP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
E A+E+VF+ K+A + LKLGQAR AI+S +A +PV EYA +K+++ G G+ DK Q
Sbjct: 62 SEFAIEEVFMAKNASSALKLGQARGAAIVSAGVADLPVYEYAARRVKQSIAGNGNADKAQ 121
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSG 161
I M+++L+ DAADALAIA+CHA SG
Sbjct: 122 IQAMVQLLLKLPSPPQADAADALAIAMCHANTRTSG 157
>gi|16760848|ref|NP_456465.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
serovar Typhi str. CT18]
gi|16765240|ref|NP_460855.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|29141460|ref|NP_804802.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|56413183|ref|YP_150258.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|167994199|ref|ZP_02575291.1| crossover junction endodeoxyribonuclease RuvC [Salmonella enterica
subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
gi|168234040|ref|ZP_02659098.1| crossover junction endodeoxyribonuclease RuvC [Salmonella enterica
subsp. enterica serovar Kentucky str. CDC 191]
gi|168238528|ref|ZP_02663586.1| crossover junction endodeoxyribonuclease RuvC [Salmonella enterica
subsp. enterica serovar Schwarzengrund str. SL480]
gi|168241527|ref|ZP_02666459.1| crossover junction endodeoxyribonuclease RuvC [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL486]
gi|168462570|ref|ZP_02696501.1| crossover junction endodeoxyribonuclease RuvC [Salmonella enterica
subsp. enterica serovar Newport str. SL317]
gi|168820722|ref|ZP_02832722.1| crossover junction endodeoxyribonuclease RuvC [Salmonella enterica
subsp. enterica serovar Weltevreden str. HI_N05-537]
gi|194444872|ref|YP_002041163.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
gi|194448512|ref|YP_002045951.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|194471832|ref|ZP_03077816.1| crossover junction endodeoxyribonuclease RuvC [Salmonella enterica
subsp. enterica serovar Kentucky str. CVM29188]
gi|194736889|ref|YP_002114933.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. CVM19633]
gi|197249729|ref|YP_002146124.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
serovar Agona str. SL483]
gi|197264932|ref|ZP_03165006.1| crossover junction endodeoxyribonuclease RuvC [Salmonella enterica
subsp. enterica serovar Saintpaul str. SARA23]
gi|197362109|ref|YP_002141746.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|204931047|ref|ZP_03221873.1| crossover junction endodeoxyribonuclease RuvC [Salmonella enterica
subsp. enterica serovar Javiana str. GA_MM04042433]
gi|205352396|ref|YP_002226197.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|207856581|ref|YP_002243232.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|213162202|ref|ZP_03347912.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
serovar Typhi str. E00-7866]
gi|213426401|ref|ZP_03359151.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
serovar Typhi str. E02-1180]
gi|213649296|ref|ZP_03379349.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
serovar Typhi str. J185]
gi|238912042|ref|ZP_04655879.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
serovar Tennessee str. CDC07-0191]
gi|289808364|ref|ZP_06538993.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
serovar Typhi str. AG3]
gi|289824026|ref|ZP_06543624.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
serovar Typhi str. E98-3139]
gi|54039582|sp|P66763|RUVC_SALTI RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|54042209|sp|P66762|RUVC_SALTY RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|81599838|sp|Q5PN00|RUVC_SALPA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|226698763|sp|B5F3J2|RUVC_SALA4 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|226698765|sp|B5R1V5|RUVC_SALEP RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|226698766|sp|B5R8D9|RUVC_SALG2 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|238689769|sp|B4TYS1|RUVC_SALSV RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|238690745|sp|B5BH57|RUVC_SALPK RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|238693527|sp|B4SVE8|RUVC_SALNS RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|238693637|sp|B4T7Z6|RUVC_SALHS RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|25321119|pir||AF0743 crossover junction endodeoxyribonuclease [imported] - Salmonella
enterica subsp. enterica serovar Typhi (strain CT18)
gi|16420434|gb|AAL20814.1| Holliday junction nuclease [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|16503145|emb|CAD05649.1| crossover junction endodeoxyribonuclease [Salmonella enterica
subsp. enterica serovar Typhi]
gi|29137087|gb|AAO68651.1| crossover junction endodeoxyribonuclease [Salmonella enterica
subsp. enterica serovar Typhi str. Ty2]
gi|56127440|gb|AAV76946.1| crossover junction endodeoxyribonuclease [Salmonella enterica
subsp. enterica serovar Paratyphi A str. ATCC 9150]
gi|194403535|gb|ACF63757.1| crossover junction endodeoxyribonuclease RuvC [Salmonella enterica
subsp. enterica serovar Newport str. SL254]
gi|194406816|gb|ACF67035.1| crossover junction endodeoxyribonuclease RuvC [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL476]
gi|194458196|gb|EDX47035.1| crossover junction endodeoxyribonuclease RuvC [Salmonella enterica
subsp. enterica serovar Kentucky str. CVM29188]
gi|194712391|gb|ACF91612.1| crossover junction endodeoxyribonuclease RuvC [Salmonella enterica
subsp. enterica serovar Schwarzengrund str. CVM19633]
gi|195634247|gb|EDX52599.1| crossover junction endodeoxyribonuclease RuvC [Salmonella enterica
subsp. enterica serovar Newport str. SL317]
gi|197093586|emb|CAR59049.1| crossover junction endodeoxyribonuclease [Salmonella enterica
subsp. enterica serovar Paratyphi A str. AKU_12601]
gi|197213432|gb|ACH50829.1| crossover junction endodeoxyribonuclease RuvC [Salmonella enterica
subsp. enterica serovar Agona str. SL483]
gi|197243187|gb|EDY25807.1| crossover junction endodeoxyribonuclease RuvC [Salmonella enterica
subsp. enterica serovar Saintpaul str. SARA23]
gi|197288682|gb|EDY28057.1| crossover junction endodeoxyribonuclease RuvC [Salmonella enterica
subsp. enterica serovar Schwarzengrund str. SL480]
gi|204320091|gb|EDZ05296.1| crossover junction endodeoxyribonuclease RuvC [Salmonella enterica
subsp. enterica serovar Javiana str. GA_MM04042433]
gi|205272177|emb|CAR37035.1| crossover junction endodeoxyribonuclease [Salmonella enterica
subsp. enterica serovar Gallinarum str. 287/91]
gi|205327886|gb|EDZ14650.1| crossover junction endodeoxyribonuclease RuvC [Salmonella enterica
subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
gi|205331988|gb|EDZ18752.1| crossover junction endodeoxyribonuclease RuvC [Salmonella enterica
subsp. enterica serovar Kentucky str. CDC 191]
gi|205339451|gb|EDZ26215.1| crossover junction endodeoxyribonuclease RuvC [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL486]
gi|205342603|gb|EDZ29367.1| crossover junction endodeoxyribonuclease RuvC [Salmonella enterica
subsp. enterica serovar Weltevreden str. HI_N05-537]
gi|206708384|emb|CAR32688.1| crossover junction endodeoxyribonuclease [Salmonella enterica
subsp. enterica serovar Enteritidis str. P125109]
gi|261247068|emb|CBG24889.1| Crossover junction endodeoxyribonuclease ruvC [Salmonella enterica
subsp. enterica serovar Typhimurium str. D23580]
gi|267993881|gb|ACY88766.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
serovar Typhimurium str. 14028S]
gi|301158418|emb|CBW17927.1| Crossover junction endodeoxyribonuclease ruvC [Salmonella enterica
subsp. enterica serovar Typhimurium str. SL1344]
gi|312912892|dbj|BAJ36866.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
serovar Typhimurium str. T000240]
gi|320085484|emb|CBY95265.1| crossover junction endodeoxyribonuclease [Salmonella enterica
subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
gi|321224542|gb|EFX49605.1| Crossover junction endodeoxyribonuclease RuvC [Salmonella enterica
subsp. enterica serovar Typhimurium str. TN061786]
gi|322616898|gb|EFY13806.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
serovar Montevideo str. 315996572]
gi|322618136|gb|EFY15028.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-1]
gi|322625807|gb|EFY22626.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-3]
gi|322626259|gb|EFY23069.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-4]
gi|322632673|gb|EFY29418.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-1]
gi|322639017|gb|EFY35710.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-2]
gi|322640457|gb|EFY37110.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
serovar Montevideo str. 531954]
gi|322644222|gb|EFY40767.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
serovar Montevideo str. NC_MB110209-0054]
gi|322649544|gb|EFY45976.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
serovar Montevideo str. OH_2009072675]
gi|322655452|gb|EFY51760.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
serovar Montevideo str. CASC_09SCPH15965]
gi|322660231|gb|EFY56469.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
serovar Montevideo str. 19N]
gi|322662912|gb|EFY59119.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
serovar Montevideo str. 81038-01]
gi|322668097|gb|EFY64256.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
serovar Montevideo str. MD_MDA09249507]
gi|322674143|gb|EFY70237.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
serovar Montevideo str. 414877]
gi|322675503|gb|EFY71577.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
serovar Montevideo str. 366867]
gi|322683083|gb|EFY79099.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
serovar Montevideo str. 413180]
gi|322686777|gb|EFY82755.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
serovar Montevideo str. 446600]
gi|323130182|gb|ADX17612.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
serovar Typhimurium str. 4/74]
gi|323195332|gb|EFZ80512.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
serovar Montevideo str. 609458-1]
gi|323199224|gb|EFZ84319.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
serovar Montevideo str. 556150-1]
gi|323204051|gb|EFZ89066.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
serovar Montevideo str. 609460]
gi|323207480|gb|EFZ92428.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
serovar Montevideo str. 507440-20]
gi|323210665|gb|EFZ95543.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
serovar Montevideo str. 556152]
gi|323217464|gb|EGA02183.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
serovar Montevideo str. MB101509-0077]
gi|323221955|gb|EGA06345.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
serovar Montevideo str. MB102109-0047]
gi|323224435|gb|EGA08723.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
serovar Montevideo str. MB110209-0055]
gi|323231486|gb|EGA15599.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
serovar Montevideo str. MB111609-0052]
gi|323235928|gb|EGA20007.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009083312]
gi|323240498|gb|EGA24541.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009085258]
gi|323245390|gb|EGA29390.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
serovar Montevideo str. 315731156]
gi|323247810|gb|EGA31748.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2009159199]
gi|323253609|gb|EGA37437.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008282]
gi|323255038|gb|EGA38826.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008283]
gi|323260271|gb|EGA43892.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008284]
gi|323266862|gb|EGA50348.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008285]
gi|323269068|gb|EGA52524.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008287]
gi|326627448|gb|EGE33791.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
serovar Gallinarum str. 9]
gi|332988791|gb|AEF07774.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
serovar Typhimurium str. UK-1]
Length = 173
Score = 149 bits (376), Expect = 1e-34, Method: Composition-based stats.
Identities = 52/136 (38%), Positives = 83/136 (61%), Gaps = 1/136 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G L ++ SG I + L RL +Y G+T++I ++P
Sbjct: 3 IILGIDPGSRITGYGVIRQVGRQLTYLGSGCIRT-KVDDLPSRLKLIYAGVTEIITQFQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQVF+ K+A + LKLGQAR +AI++ +PV EYA +K+ V+G+G +K Q
Sbjct: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121
Query: 126 IHMMLKMLMPESFFKG 141
+ M++ L+
Sbjct: 122 VQHMVRTLLKLPANPQ 137
>gi|319404768|emb|CBI78369.1| Holliday junction nuclease ruvC [Bartonella rochalimae ATCC
BAA-1498]
Length = 169
Score = 149 bits (376), Expect = 1e-34, Method: Composition-based stats.
Identities = 101/168 (60%), Positives = 133/168 (79%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M +IRIIGIDPGLRRTGWG++D+ G++L FV+SGT+ S + LA RLC+LYEGL+ V+
Sbjct: 1 MVDTIRIIGIDPGLRRTGWGVIDLCGNHLHFVASGTLHSNAQNDLASRLCELYEGLSKVV 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
+ P EAAVE VFVNK+A TLKLGQARAIA+L PA +P+SEYAPN +KK+VIGVGH
Sbjct: 61 HQFMPHEAAVEHVFVNKNAATTLKLGQARAIALLVPAQEGLPISEYAPNKVKKSVIGVGH 120
Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
G+K+QIHMM+K+L+P + F DAADALA+A+CH+ H + Y++ +
Sbjct: 121 GEKEQIHMMVKILLPRAEFDSSDAADALALAICHSAHHTNPSYRLKAS 168
>gi|296126684|ref|YP_003633936.1| crossover junction endodeoxyribonuclease RuvC [Brachyspira
murdochii DSM 12563]
gi|296018500|gb|ADG71737.1| crossover junction endodeoxyribonuclease RuvC [Brachyspira
murdochii DSM 12563]
Length = 157
Score = 149 bits (376), Expect = 1e-34, Method: Composition-based stats.
Identities = 50/155 (32%), Positives = 82/155 (52%), Gaps = 1/155 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ +GIDPG R G+ ++ V+SG I + Q+ RL +Y L ++IK +
Sbjct: 1 MITLGIDPGFARCGYAFIEAKNSAYKIVNSGLIETFSNQNYNQRLSFIYTQLDELIKKYS 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P +AA+E++F +K+ +K+ +AR + IL+ L I +EY P +K + G G+ +K
Sbjct: 61 PSDAAIEELFFSKNTKTAIKVAEARGVIILALTLNNIDFTEYKPKEVKSQITGNGNANKD 120
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHAN 159
+ M+ L S D ADA+AIA+ HA
Sbjct: 121 AMMKMV-NLFTGSNIIQDDTADAVAIALAHASRNR 154
>gi|213582031|ref|ZP_03363857.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
serovar Typhi str. E98-0664]
Length = 162
Score = 149 bits (376), Expect = 1e-34, Method: Composition-based stats.
Identities = 52/136 (38%), Positives = 83/136 (61%), Gaps = 1/136 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G L ++ SG I + L RL +Y G+T++I ++P
Sbjct: 3 IILGIDPGSRITGYGVIRQVGRQLTYLGSGCIRT-KVDDLPSRLKLIYAGVTEIITQFQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQVF+ K+A + LKLGQAR +AI++ +PV EYA +K+ V+G+G +K Q
Sbjct: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121
Query: 126 IHMMLKMLMPESFFKG 141
+ M++ L+
Sbjct: 122 VQHMVRTLLKLPANPQ 137
>gi|90426277|ref|YP_534647.1| Holliday junction resolvase [Rhodopseudomonas palustris BisB18]
gi|122995258|sp|Q20X08|RUVC_RHOPB RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|90108291|gb|ABD90328.1| Holliday junction endonuclease RuvC [Rhodopseudomonas palustris
BisB18]
Length = 175
Score = 149 bits (376), Expect = 1e-34, Method: Composition-based stats.
Identities = 93/167 (55%), Positives = 120/167 (71%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
+R+ IRI+GIDPGLRRTGWG+++ G+ L F+ G++ LA RL +++ GL V+
Sbjct: 6 IRQPIRILGIDPGLRRTGWGVIESCGNRLVFIGCGSVEPDNDLPLASRLLEIHHGLAKVL 65
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
+ P EAAVEQ FVNKDA ATLKLGQAR IA+L+PAL I V+EYAPN IKK VIG GH
Sbjct: 66 AEFVPAEAAVEQTFVNKDAGATLKLGQARGIAMLAPALVGIAVAEYAPNLIKKTVIGAGH 125
Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
DK QI MMLK+L+P++ K DAADALAIA+ HA+H ++ +
Sbjct: 126 ADKAQIQMMLKILLPKAEPKTADAADALAIAITHAHHRGGALLRLKA 172
>gi|302338525|ref|YP_003803731.1| crossover junction endodeoxyribonuclease RuvC [Spirochaeta
smaragdinae DSM 11293]
gi|301635710|gb|ADK81137.1| crossover junction endodeoxyribonuclease RuvC [Spirochaeta
smaragdinae DSM 11293]
Length = 167
Score = 149 bits (376), Expect = 1e-34, Method: Composition-based stats.
Identities = 42/135 (31%), Positives = 77/135 (57%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
RI+G+DPG TGWG+V+ G+ V G I + ++ + FRL +Y+ + +++ +RP
Sbjct: 3 RILGLDPGFAETGWGVVEAEGNRFRHVDHGAIRTKAKEQVGFRLSSIYDAVKSLVEQYRP 62
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
E +E+++ K+ + L + QAR + +L I Y+P IK+ + GVG DK+Q
Sbjct: 63 ECCGIEELYFAKNITSALPVAQARGVLLLVLEQHSIVTESYSPPLIKQTITGVGRADKRQ 122
Query: 126 IHMMLKMLMPESFFK 140
+ M+++L+ +
Sbjct: 123 VQEMVRLLLGLTEIP 137
>gi|213024295|ref|ZP_03338742.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
serovar Typhi str. 404ty]
Length = 135
Score = 149 bits (376), Expect = 1e-34, Method: Composition-based stats.
Identities = 52/132 (39%), Positives = 83/132 (62%), Gaps = 1/132 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G L ++ SG I + L RL +Y G+T++I ++P
Sbjct: 3 IILGIDPGSRITGYGVIRQVGRQLTYLGSGCIRT-KVDDLPSRLKLIYAGVTEIITQFQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQVF+ K+A + LKLGQAR +AI++ +PV EYA +K+ V+G+G +K Q
Sbjct: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121
Query: 126 IHMMLKMLMPES 137
+ M++ L+
Sbjct: 122 VQHMVRTLLKLP 133
>gi|291277643|ref|YP_003517415.1| crossover junction endodeoxyribonuclease [Helicobacter mustelae
12198]
gi|290964837|emb|CBG40696.1| crossover junction endodeoxyribonuclease [Helicobacter mustelae
12198]
Length = 151
Score = 149 bits (376), Expect = 1e-34, Method: Composition-based stats.
Identities = 44/151 (29%), Positives = 75/151 (49%), Gaps = 2/151 (1%)
Query: 8 IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEE 67
+GIDPG R G+ I+ L + +G I + L +++ + EG+ V+K+ + +
Sbjct: 1 MGIDPGSRNCGYAIIKKENQRLFLLEAGFIK-IKERVLQYQIAEFIEGIDMVLKHHKIDS 59
Query: 68 AAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIH 127
A+E +F + + +KL Q R L +EY P +KKA+ G G DK Q+
Sbjct: 60 VAIEDMFYAYNPKSVIKLAQFRGALSLKILQDFGNFAEYTPLQVKKALTGNGKADKNQVA 119
Query: 128 MMLKMLMPES-FFKGKDAADALAIAVCHAYH 157
M+K ++ + D DA+AIA+ H+
Sbjct: 120 FMVKQILNLKGEIRPLDITDAIAIAITHSQR 150
>gi|190571527|ref|YP_001975885.1| crossover junction endodeoxyribonuclease RuvC [Wolbachia
endosymbiont of Culex quinquefasciatus Pel]
gi|238058360|sp|B3CN07|RUVC_WOLPP RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|190357799|emb|CAQ55254.1| crossover junction endodeoxyribonuclease RuvC [Wolbachia
endosymbiont of Culex quinquefasciatus Pel]
Length = 165
Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 72/165 (43%), Positives = 104/165 (63%), Gaps = 1/165 (0%)
Query: 4 SIRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
I+IIG+DPG+ +TGW I+ + +N+ F+ GTI + + + RL ++E L VI
Sbjct: 1 MIKIIGLDPGMSKTGWAIIRLEEKNNIKFLGGGTISTDGKLGVGERLHIIFEQLKKVIFL 60
Query: 63 WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
+ P EAAVE++F+NK+ ++L LG ARAIAIL + +P++EY N IKK++ G GH D
Sbjct: 61 YSPNEAAVEKIFINKNPKSSLTLGYARAIAILILRMTDLPMNEYDANYIKKSITGNGHAD 120
Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
K QI M+K ++ S K ADALA A+CHAY N + I S
Sbjct: 121 KGQIIFMVKQIVKSSNIKCHHTADALATAICHAYTKNFCFMGIGS 165
>gi|260550052|ref|ZP_05824266.1| crossover junction endodeoxyribonuclease RuvC [Acinetobacter sp.
RUH2624]
gi|260406807|gb|EEX00286.1| crossover junction endodeoxyribonuclease RuvC [Acinetobacter sp.
RUH2624]
Length = 181
Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 68/154 (44%), Positives = 98/154 (63%), Gaps = 1/154 (0%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
IIGIDPG R TG+GI++ G L FV +GTI + Q + RL +++ G+ ++K P
Sbjct: 4 IIGIDPGSRLTGYGIIEKDGSKLRFVDAGTIRTET-QEMPERLKRIFAGVERIVKFHGPT 62
Query: 67 EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
EAAVEQVF+ ++ + LKLGQAR AI + + V+EY IK++V+G G DK+Q+
Sbjct: 63 EAAVEQVFMAQNPDSALKLGQARGAAIAALVNLDLQVAEYTARQIKQSVVGYGAADKEQV 122
Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
MM+ L+ + DAADALA A+CHA+ + S
Sbjct: 123 QMMVMRLLNLTIKPQADAADALAAAICHAHASGS 156
>gi|317154310|ref|YP_004122358.1| crossover junction endodeoxyribonuclease RuvC [Desulfovibrio
aespoeensis Aspo-2]
gi|316944561|gb|ADU63612.1| crossover junction endodeoxyribonuclease RuvC [Desulfovibrio
aespoeensis Aspo-2]
Length = 168
Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 60/159 (37%), Positives = 90/159 (56%), Gaps = 1/159 (0%)
Query: 2 RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
+ S+ +IG+DPG R TG+GIV V +GTI + + + RL +Y L ++I
Sbjct: 3 QDSVVVIGLDPGSRVTGYGIVRECSGQAELVVTGTIRTPAGKDMGTRLGVIYTRLAELIT 62
Query: 62 NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
P EAA+E VFV K+ + LKLGQAR A+ + A + V+EY P+ +KK ++GVG
Sbjct: 63 THCPAEAAIENVFVAKNPSSALKLGQARGAAMAACATHGLSVAEYEPSKVKKNLVGVGGA 122
Query: 122 DKKQIHMMLKMLMPESFF-KGKDAADALAIAVCHAYHAN 159
K Q+ M+ + +DA+DALA+A+CH
Sbjct: 123 PKDQVAFMVARCLGIRKPDWPEDASDALAVAICHLNERR 161
>gi|212696230|ref|ZP_03304358.1| hypothetical protein ANHYDRO_00766 [Anaerococcus hydrogenalis DSM
7454]
gi|325846639|ref|ZP_08169554.1| crossover junction endodeoxyribonuclease RuvC [Anaerococcus
hydrogenalis ACS-025-V-Sch4]
gi|212676859|gb|EEB36466.1| hypothetical protein ANHYDRO_00766 [Anaerococcus hydrogenalis DSM
7454]
gi|325481397|gb|EGC84438.1| crossover junction endodeoxyribonuclease RuvC [Anaerococcus
hydrogenalis ACS-025-V-Sch4]
Length = 164
Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 42/136 (30%), Positives = 80/136 (58%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ ++GIDPG+ G+G+++V G+ + +G + + + RL LY+ L+D+I+ ++
Sbjct: 1 MIVLGIDPGIAIMGYGVLEVNGNRYNVLENGVVTTSAKTKTPERLEILYKNLSDIIRQYK 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+E A+E++F N++ + +G AR I +L + +P+ EY P IK+A+ G G +KK
Sbjct: 61 PDEFAIEELFFNQNVKTAITVGHARGIQVLCAQMNNLPIYEYTPLQIKQAITGFGRANKK 120
Query: 125 QIHMMLKMLMPESFFK 140
Q+ + L+ S
Sbjct: 121 QMQETITTLLNLSEIP 136
>gi|332298167|ref|YP_004440089.1| Crossover junction endodeoxyribonuclease ruvC [Treponema
brennaborense DSM 12168]
gi|332181270|gb|AEE16958.1| Crossover junction endodeoxyribonuclease ruvC [Treponema
brennaborense DSM 12168]
Length = 189
Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 45/142 (31%), Positives = 75/142 (52%)
Query: 2 RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
++ R++GIDPGL TG+G+V+ G+ V+ G I + RL +Y L V+
Sbjct: 30 ERTRRVLGIDPGLASTGYGVVESCGNRYRLVAYGVIETPASAPRGERLLAIYSRLCAVLD 89
Query: 62 NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
W+P EA +E ++ K+ + + + +AR +A L A +P+ EY PNTIK +V G
Sbjct: 90 EWQPREAGMETLYFAKNVSSAMAVAEARGVATLCLAQHCVPLGEYTPNTIKLSVTGTASA 149
Query: 122 DKKQIHMMLKMLMPESFFKGKD 143
KK + +++L+ D
Sbjct: 150 GKKLVQEYVRLLLGLEAPPEPD 171
>gi|325832017|ref|ZP_08165114.1| crossover junction endodeoxyribonuclease RuvC [Eggerthella sp.
HGA1]
gi|325486338|gb|EGC88790.1| crossover junction endodeoxyribonuclease RuvC [Eggerthella sp.
HGA1]
Length = 187
Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 50/144 (34%), Positives = 78/144 (54%), Gaps = 1/144 (0%)
Query: 1 MRKSIR-IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDV 59
M + R I+GIDPGL TGWGIV+ G L + G + + LA RL +++E + V
Sbjct: 1 MTRIERTILGIDPGLANTGWGIVEQRGPRLACTAYGCVSTPKELPLAQRLRKIHEQMAAV 60
Query: 60 IKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVG 119
I +RP A +E V+ + + GQAR A+++ A + V E++P+ IK AV+G G
Sbjct: 61 IARFRPTCAGIETVWFGVNVQSAFATGQARGAALVACAECDLEVLEFSPSQIKLAVVGTG 120
Query: 120 HGDKKQIHMMLKMLMPESFFKGKD 143
+K Q+ M++ L+ D
Sbjct: 121 SAEKDQVQYMVRQLLALEDVPRPD 144
>gi|85714395|ref|ZP_01045383.1| Holliday junction resolvase [Nitrobacter sp. Nb-311A]
gi|85698842|gb|EAQ36711.1| Holliday junction resolvase [Nitrobacter sp. Nb-311A]
Length = 200
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 90/159 (56%), Positives = 115/159 (72%)
Query: 2 RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
IRI+GIDPGLRRTGWG++D G+ L FV G++ + LA RL ++ GL V+
Sbjct: 31 SSPIRILGIDPGLRRTGWGVLDTEGNRLVFVGCGSVETREHMELASRLLAIHAGLGAVLD 90
Query: 62 NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
+RP EAA+EQ FVNKD VATLKLGQAR +A+L+PA+ I V+EYAPN +KK V+G GH
Sbjct: 91 RFRPAEAAIEQTFVNKDGVATLKLGQARGVAMLAPAMFGIAVAEYAPNQVKKTVVGAGHA 150
Query: 122 DKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
DK QI MLK+L+P++ K DAADALAIA+ HA+H S
Sbjct: 151 DKIQIQAMLKILLPKADPKSADAADALAIAITHAHHRKS 189
>gi|999741|pdb|1HJR|A Chain A, Atomic Structure Of The Ruvc Resolvase: A Holliday
Junction- Specific Endonuclease From E. Coli
gi|999742|pdb|1HJR|B Chain B, Atomic Structure Of The Ruvc Resolvase: A Holliday
Junction- Specific Endonuclease From E. Coli
gi|999743|pdb|1HJR|C Chain C, Atomic Structure Of The Ruvc Resolvase: A Holliday
Junction- Specific Endonuclease From E. Coli
gi|999744|pdb|1HJR|D Chain D, Atomic Structure Of The Ruvc Resolvase: A Holliday
Junction- Specific Endonuclease From E. Coli
Length = 158
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 52/136 (38%), Positives = 83/136 (61%), Gaps = 1/136 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G L ++ SG I + L RL +Y G+T++I ++P
Sbjct: 2 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRT-KVDDLPSRLKLIYAGVTEIITQFQP 60
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQVF+ K+A + LKLGQAR +AI++ +PV EYA +K+ V+G+G +K Q
Sbjct: 61 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 120
Query: 126 IHMMLKMLMPESFFKG 141
+ M++ L+
Sbjct: 121 VQHMVRTLLKLPANPQ 136
>gi|237731900|ref|ZP_04562381.1| holliday junction resolvase [Citrobacter sp. 30_2]
gi|283832739|ref|ZP_06352480.1| crossover junction endodeoxyribonuclease RuvC [Citrobacter youngae
ATCC 29220]
gi|226907439|gb|EEH93357.1| holliday junction resolvase [Citrobacter sp. 30_2]
gi|291072422|gb|EFE10531.1| crossover junction endodeoxyribonuclease RuvC [Citrobacter youngae
ATCC 29220]
Length = 173
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 52/136 (38%), Positives = 83/136 (61%), Gaps = 1/136 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G L ++ SG I + L RL +Y G+T++I ++P
Sbjct: 3 IILGIDPGSRITGYGVIRQVGRQLTYLGSGCIRT-KVDDLPSRLKLIYAGVTEIITQFQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQVF+ K+A + LKLGQAR +AI++ +PV EYA +K+ V+G+G +K Q
Sbjct: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAATNQDLPVFEYAARQVKQTVVGIGSAEKSQ 121
Query: 126 IHMMLKMLMPESFFKG 141
+ M++ L+
Sbjct: 122 VQHMVRTLLKLPANPQ 137
>gi|294508699|ref|YP_003572758.1| Crossover junction endodeoxyribonuclease RuvC [Salinibacter ruber
M8]
gi|294345028|emb|CBH25806.1| Crossover junction endodeoxyribonuclease RuvC [Salinibacter ruber
M8]
Length = 179
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 57/154 (37%), Positives = 89/154 (57%), Gaps = 1/154 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ I+G+DPG R TG+G+VD + + V++ TI RL Q+Y+ L DVI
Sbjct: 1 MIILGVDPGSRATGYGLVDPSSGDEHLVAADTIRLADTDDHPTRLKQIYDALVDVIDAHG 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+E AVE ++ + LKLG+A+A A+++ +PV++Y P +KK+V G G+ KK
Sbjct: 61 PDEFAVEMPVYGQNPQSMLKLGRAQAAAMMAALNRDLPVAQYTPKEVKKSVTGNGNASKK 120
Query: 125 QIHMMLKMLMP-ESFFKGKDAADALAIAVCHAYH 157
Q+ M++ ++ D ADALAIA+CH
Sbjct: 121 QVGFMIESILSAGEQTFAHDTADALAIALCHGNR 154
>gi|159903678|ref|YP_001551022.1| Holliday junction resolvase [Prochlorococcus marinus str. MIT 9211]
gi|238687111|sp|A9BB56|RUVC_PROM4 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|159888854|gb|ABX09068.1| Crossover junction endodeoxyribonuclease RuvC [Prochlorococcus
marinus str. MIT 9211]
Length = 158
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 51/156 (32%), Positives = 83/156 (53%), Gaps = 2/156 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ I+GIDPGL R G+G++D + G I + + R+ ++ L +I W+
Sbjct: 1 MIILGIDPGLARVGYGLIDCNMTQKKMLDCGIIKTSQDHNDGERMVEITRDLRYLINKWK 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ A+VE+ F + T+K+ QAR + I++ A R+P+ E+ P IK AV G G +K
Sbjct: 61 PQIASVEKFFFYRS-STTIKVVQARGVVIMTLARFRVPILEFPPMQIKLAVTGSGKANKD 119
Query: 125 QIHMMLKMLMPESFFK-GKDAADALAIAVCHAYHAN 159
++ M + + S DA+DALAIA+ Y
Sbjct: 120 EVSMAVIRELDLSKPPRPDDASDALAIALTAYYQQR 155
>gi|163850395|ref|YP_001638438.1| crossover junction endodeoxyribonuclease RuvC [Methylobacterium
extorquens PA1]
gi|218528955|ref|YP_002419771.1| Holliday junction resolvase [Methylobacterium chloromethanicum CM4]
gi|226698759|sp|A9W1B1|RUVC_METEP RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|254767477|sp|B7L253|RUVC_METC4 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|163662000|gb|ABY29367.1| crossover junction endodeoxyribonuclease RuvC [Methylobacterium
extorquens PA1]
gi|218521258|gb|ACK81843.1| crossover junction endodeoxyribonuclease RuvC [Methylobacterium
chloromethanicum CM4]
Length = 189
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 74/140 (52%), Positives = 100/140 (71%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M +RI+GIDPGLRRTGWG++ G L +++ G + S LA RL +L+EGLT ++
Sbjct: 1 MTTDVRILGIDPGLRRTGWGLITARGSKLSYLACGVVTSDGDLPLALRLRELHEGLTRIV 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
+ P+E +VE+ FVNKDA ATLKLG ARA+A+L PALA +PV+EYA N +KK V G GH
Sbjct: 61 TTYTPDEVSVEETFVNKDAQATLKLGHARAVALLVPALAGLPVAEYAANLVKKTVAGNGH 120
Query: 121 GDKKQIHMMLKMLMPESFFK 140
+K QI M+K L+P++ FK
Sbjct: 121 AEKVQIQAMVKFLLPKAEFK 140
>gi|332090040|gb|EGI95140.1| crossover junction endodeoxyribonuclease RuvC [Shigella boydii
5216-82]
Length = 173
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 51/136 (37%), Positives = 83/136 (61%), Gaps = 1/136 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G L ++ SG I + L RL +Y G+T++I ++P
Sbjct: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRT-KVDDLPSRLKLIYAGVTEIITQFQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQVF+ K++ + LKLGQAR +AI++ +PV EYA +K+ V+G+G +K Q
Sbjct: 62 DYFAIEQVFMAKNSDSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121
Query: 126 IHMMLKMLMPESFFKG 141
+ M++ L+
Sbjct: 122 VQHMVRTLLKLPANPQ 137
>gi|292488539|ref|YP_003531423.1| Holliday junction nuclease [Erwinia amylovora CFBP1430]
gi|292899715|ref|YP_003539084.1| crossover junction endodeoxyribonuclease [Erwinia amylovora ATCC
49946]
gi|291199563|emb|CBJ46680.1| crossover junction endodeoxyribonuclease [Erwinia amylovora ATCC
49946]
gi|291553970|emb|CBA21015.1| Holliday junction nuclease [Erwinia amylovora CFBP1430]
gi|312172682|emb|CBX80938.1| Holliday junction nuclease [Erwinia amylovora ATCC BAA-2158]
Length = 173
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 54/136 (39%), Positives = 83/136 (61%), Gaps = 1/136 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G L ++ SG I + V L RL +Y G++++I +RP
Sbjct: 3 IILGIDPGSRVTGYGVIRQTGRQLSYLGSGCIRTSV-TDLPSRLKLIYAGVSEIITQFRP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
E A+EQVF+ K+A + LKLGQAR AI++ +PV EYA +K+ V+G+G +K Q
Sbjct: 62 EYFAIEQVFMAKNADSALKLGQARGAAIVAAVNHDLPVFEYAARQVKQTVVGIGSAEKSQ 121
Query: 126 IHMMLKMLMPESFFKG 141
+ M++ L+
Sbjct: 122 VQHMVRTLLKLPANPQ 137
>gi|289450708|ref|YP_003475228.1| crossover junction endodeoxyribonuclease RuvC [Clostridiales
genomosp. BVAB3 str. UPII9-5]
gi|289185255|gb|ADC91680.1| crossover junction endodeoxyribonuclease RuvC [Clostridiales
genomosp. BVAB3 str. UPII9-5]
Length = 167
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 44/138 (31%), Positives = 78/138 (56%), Gaps = 1/138 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ I+G+DPG TG+GI++ + L + G + + R + RL +++ GL +++ +
Sbjct: 1 MIIMGVDPGYAITGYGILETKNNRLNPLDFGVLTTPARMPIERRLYKIHTGLIAIMREYN 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P AVE++F ++ + +AR IA+L+ A +IPV EY P +K AV G G +K+
Sbjct: 61 PAVLAVEELFFARNTTTAIGTAEARGIALLAAAQYKIPVFEYTPLQVKLAVTGYGKSEKR 120
Query: 125 QIHMMLKMLMPE-SFFKG 141
Q+ M+K+L+ K
Sbjct: 121 QVQSMVKLLLHLDEMPKP 138
>gi|83312318|ref|YP_422582.1| Holliday junction resolvase [Magnetospirillum magneticum AMB-1]
gi|123740436|sp|Q2W2A2|RUVC_MAGMM RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|82947159|dbj|BAE52023.1| Holliday junction resolvasome, endonuclease subunit
[Magnetospirillum magneticum AMB-1]
Length = 166
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 75/156 (48%), Positives = 107/156 (68%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+G+DPGLR TGWGI+D + L V+ G I +LA RL QL++G+ VI ++
Sbjct: 1 MRILGLDPGLRNTGWGIIDAVDNRLRHVADGVIRPDASAALAERLVQLHDGIMAVIADFS 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+EAAVE+ FVN + +TLKLGQAR + +L PA + +PV EYA +K++V+G G K+
Sbjct: 61 PDEAAVEETFVNMNPASTLKLGQARGVVLLVPAKSGLPVGEYAATLVKQSVVGTGRAAKE 120
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
Q+ MM+K L+P DAADALA+A+CHA+H +
Sbjct: 121 QVGMMVKTLLPGCLAATADAADALAVAICHAHHRGT 156
>gi|320182599|gb|EFW57488.1| Crossover junction endodeoxyribonuclease RuvC [Shigella boydii ATCC
9905]
Length = 173
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 52/136 (38%), Positives = 83/136 (61%), Gaps = 1/136 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G L ++ SG I + L RL +Y G+T++I ++P
Sbjct: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRT-KVDDLPSRLKLIYAGVTEIITQFQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQVF+ K+A + LKLGQAR +AI++ +PV EYA +K+ V+G+G +K Q
Sbjct: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121
Query: 126 IHMMLKMLMPESFFKG 141
+ M++ L+
Sbjct: 122 VQHMVRTLLKLPANPQ 137
>gi|206577404|ref|YP_002237746.1| crossover junction endodeoxyribonuclease RuvC [Klebsiella
pneumoniae 342]
gi|288934604|ref|YP_003438663.1| crossover junction endodeoxyribonuclease RuvC [Klebsiella variicola
At-22]
gi|290508805|ref|ZP_06548176.1| crossover junction endodeoxyribonuclease RuvC [Klebsiella sp.
1_1_55]
gi|226698758|sp|B5XQ03|RUVC_KLEP3 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|206566462|gb|ACI08238.1| crossover junction endodeoxyribonuclease RuvC [Klebsiella
pneumoniae 342]
gi|288889313|gb|ADC57631.1| crossover junction endodeoxyribonuclease RuvC [Klebsiella variicola
At-22]
gi|289778199|gb|EFD86196.1| crossover junction endodeoxyribonuclease RuvC [Klebsiella sp.
1_1_55]
Length = 173
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 52/136 (38%), Positives = 83/136 (61%), Gaps = 1/136 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G L ++ SG I + L RL +Y G+T++I ++P
Sbjct: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRT-KVDDLPSRLKLIYAGVTEIITQFQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQVF+ K+A + LKLGQAR +AI++ +PV EYA +K+ V+G+G +K Q
Sbjct: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAATNQSLPVFEYAARQVKQTVVGIGSAEKSQ 121
Query: 126 IHMMLKMLMPESFFKG 141
+ M++ L+
Sbjct: 122 VQHMVRTLLKLPANPQ 137
>gi|67459565|ref|YP_247189.1| Holliday junction resolvase [Rickettsia felis URRWXCal2]
gi|75536035|sp|Q4UKB1|RUVC_RICFE RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|67005098|gb|AAY62024.1| Crossover junction endodeoxyribonuclease RuvC [Rickettsia felis
URRWXCal2]
Length = 156
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 57/155 (36%), Positives = 85/155 (54%), Gaps = 2/155 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ ++GIDP L GW +V L +++SG I + + + RL + L VI ++
Sbjct: 1 MIVLGIDPALGSLGWAVVAKDTAKLKYLASGIIKTNSKDEIHNRLAFINSTLEKVILEYQ 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P AA+E+ FVN ++V +LKLG AR + + + E+ PN +KK V G GH +K
Sbjct: 61 PNMAAIEETFVNTNSVTSLKLGYARGAIMSLIGRYNLDMREFKPNMVKKTVTGYGHAEKD 120
Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAV-CHAYH 157
QI M+K+L+P S D ADA+AIA CH
Sbjct: 121 QILHMIKLLLPGTSAITNSDEADAVAIAYTCHVMR 155
>gi|307609999|emb|CBW99531.1| crossover junction endodeoxyribonuclease ruvC [Legionella
pneumophila 130b]
Length = 174
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 60/163 (36%), Positives = 104/163 (63%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ +G + ++ SG I + L+ +L Q+Y+G+ +++ ++ P
Sbjct: 3 IILGIDPGSRVTGYGLIKESGRKIAYIDSGCIRTSNDVELSHKLLQIYDGICELMDHYSP 62
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
E A+EQ+F++ + + LKLG AR +A+++ A R+ + EY+ IK++V+G G +K Q
Sbjct: 63 TEVAIEQIFMHNNPNSALKLGHARGVAMVAAASHRVKICEYSAREIKQSVVGYGAAEKDQ 122
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
+ M+ L+ + KDAADALAIA+CH++ N I S+
Sbjct: 123 VSHMVVELLQLNRAPQKDAADALAIAICHSHMRNGLSKLIGSR 165
>gi|293395807|ref|ZP_06640089.1| crossover junction endoribonuclease subunit C [Serratia odorifera
DSM 4582]
gi|291421744|gb|EFE94991.1| crossover junction endoribonuclease subunit C [Serratia odorifera
DSM 4582]
Length = 173
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 50/136 (36%), Positives = 83/136 (61%), Gaps = 1/136 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G L +++SG I + V + RL +Y G++++I ++P
Sbjct: 3 IILGIDPGSRITGYGLIRQQGRQLSYIASGCIRTVV-DDMPTRLKLIYAGVSEIITQFQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQVF+ K+ + LKLGQAR +AI++ + V EYA +K+ V+G G +K Q
Sbjct: 62 DFFAIEQVFMAKNPDSALKLGQARGVAIVAAVNQNLEVFEYAARQVKQTVVGTGAAEKSQ 121
Query: 126 IHMMLKMLMPESFFKG 141
+ M++ L+ S
Sbjct: 122 VQHMVRSLLKLSANPQ 137
>gi|71909672|ref|YP_287259.1| crossover junction endodeoxyribonuclease RuvC [Dechloromonas
aromatica RCB]
gi|97274763|sp|Q478E2|RUVC_DECAR RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|71849293|gb|AAZ48789.1| Crossover junction endodeoxyribonuclease RuvC [Dechloromonas
aromatica RCB]
Length = 179
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 58/132 (43%), Positives = 87/132 (65%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
RI+GIDPGLR TG+G++++ G L +V+SG I S ++SL R+ L+ G+++VI ++P
Sbjct: 7 RILGIDPGLRVTGFGVIELHGKQLVYVASGCIKSNDKESLPERIKTLFAGISEVIATYQP 66
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+AAVE+VFVN + +TL LGQAR AI + A +PV+EY K+AV+G G K Q
Sbjct: 67 NQAAVEKVFVNVNPQSTLLLGQARGAAISALVHADLPVAEYTALQTKQAVVGHGKAAKDQ 126
Query: 126 IHMMLKMLMPES 137
+ M+ L+
Sbjct: 127 VQAMVVRLLNLP 138
>gi|323138243|ref|ZP_08073315.1| crossover junction endodeoxyribonuclease RuvC [Methylocystis sp.
ATCC 49242]
gi|322396495|gb|EFX99024.1| crossover junction endodeoxyribonuclease RuvC [Methylocystis sp.
ATCC 49242]
Length = 168
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 84/167 (50%), Positives = 116/167 (69%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
+ IRI+GIDPGLR TGWG+++ G L FV+ G + S + RL QL+EGL VI
Sbjct: 2 ISPPIRILGIDPGLRNTGWGVIESQGSRLSFVACGRVKSDGALDMGNRLRQLHEGLMQVI 61
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
++ P EAAVE+ FVN+D +TLKLGQAR IA+++PALA + ++EYA N +KK V+G GH
Sbjct: 62 ADYGPHEAAVEETFVNRDPQSTLKLGQARGIALMAPALAGLVIAEYAANLVKKIVVGAGH 121
Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
DK QI MM+++L+P S DAADALA+A+CHA H + + ++
Sbjct: 122 ADKAQIQMMVRVLLPASQATSADAADALAVAICHAQHRGARALRESA 168
>gi|295095543|emb|CBK84633.1| crossover junction endodeoxyribonuclease RuvC [Enterobacter cloacae
subsp. cloacae NCTC 9394]
Length = 173
Score = 148 bits (374), Expect = 2e-34, Method: Composition-based stats.
Identities = 51/136 (37%), Positives = 83/136 (61%), Gaps = 1/136 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G L ++ SG I + L RL +Y G++++I ++P
Sbjct: 3 IILGIDPGSRVTGYGVIRQVGRQLTYLGSGCIRT-KVDDLPSRLKLIYAGVSEIITQFQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQVF+ K+A + LKLGQAR +AI++ +PV EYA +K+ V+G+G +K Q
Sbjct: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQDLPVFEYAARQVKQTVVGIGSAEKSQ 121
Query: 126 IHMMLKMLMPESFFKG 141
+ M++ L+
Sbjct: 122 VQHMVRTLLKLPANPQ 137
>gi|91978631|ref|YP_571290.1| Holliday junction resolvase [Rhodopseudomonas palustris BisB5]
gi|91685087|gb|ABE41389.1| Holliday junction endonuclease RuvC [Rhodopseudomonas palustris
BisB5]
Length = 232
Score = 148 bits (374), Expect = 2e-34, Method: Composition-based stats.
Identities = 88/162 (54%), Positives = 117/162 (72%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
+R ++RI+GIDPGLRRTGWG+VD G+ L FV G++ LA RL ++ GL+ V+
Sbjct: 64 IRTAVRILGIDPGLRRTGWGVVDSDGNRLVFVGCGSVEPKNTLPLAERLLAIHHGLSRVL 123
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
++ P EAAVEQ FVNKD ATLKLGQAR +A+L+PA+ + V+EYAPN +KK V+G GH
Sbjct: 124 TDYAPAEAAVEQTFVNKDGAATLKLGQARGVAMLAPAMRGLLVAEYAPNLVKKTVVGAGH 183
Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGY 162
DK QI MMLK+L+P++ DAADALA+A+ HA+H S
Sbjct: 184 ADKTQIQMMLKILLPKADPHSADAADALAVAITHAHHRVSAQ 225
>gi|30063273|ref|NP_837444.1| Holliday junction resolvase [Shigella flexneri 2a str. 2457T]
gi|56479977|ref|NP_707723.2| Holliday junction resolvase [Shigella flexneri 2a str. 301]
gi|110805807|ref|YP_689327.1| Holliday junction resolvase [Shigella flexneri 5 str. 8401]
gi|44888402|sp|Q7UAE7|RUVC_SHIFL RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|123048149|sp|Q0T3U3|RUVC_SHIF8 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|30041525|gb|AAP17253.1| Holliday junction nuclease [Shigella flexneri 2a str. 2457T]
gi|56383528|gb|AAN43430.2| Holliday junction nuclease [Shigella flexneri 2a str. 301]
gi|110615355|gb|ABF04022.1| Holliday junction nuclease [Shigella flexneri 5 str. 8401]
gi|281601278|gb|ADA74262.1| Crossover junction endodeoxyribonuclease ruvC [Shigella flexneri
2002017]
gi|313650641|gb|EFS15043.1| crossover junction endodeoxyribonuclease RuvC [Shigella flexneri 2a
str. 2457T]
gi|332757622|gb|EGJ87955.1| crossover junction endodeoxyribonuclease RuvC [Shigella flexneri
2747-71]
gi|332758051|gb|EGJ88377.1| crossover junction endodeoxyribonuclease RuvC [Shigella flexneri
K-671]
gi|332766839|gb|EGJ97040.1| crossover junction endodeoxyribonuclease RuvC [Shigella flexneri
2930-71]
gi|333004815|gb|EGK24337.1| crossover junction endodeoxyribonuclease RuvC [Shigella flexneri
K-218]
gi|333018587|gb|EGK37881.1| crossover junction endodeoxyribonuclease RuvC [Shigella flexneri
K-304]
Length = 173
Score = 148 bits (374), Expect = 2e-34, Method: Composition-based stats.
Identities = 52/136 (38%), Positives = 83/136 (61%), Gaps = 1/136 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G L ++ SG I + L RL +Y G+T++I ++P
Sbjct: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRT-KVDDLPSRLKLIYAGVTEIITQFQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQVF+ K+A + LKLGQAR +AI++ +PV EYA +K+ V+G+G +K Q
Sbjct: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGMGSAEKSQ 121
Query: 126 IHMMLKMLMPESFFKG 141
+ M++ L+
Sbjct: 122 VQHMVRTLLKLPANPQ 137
>gi|240137472|ref|YP_002961943.1| RuvC; Holliday junction nuclease [Methylobacterium extorquens AM1]
gi|240007440|gb|ACS38666.1| RuvC; Holliday junction nuclease [Methylobacterium extorquens AM1]
Length = 202
Score = 148 bits (374), Expect = 2e-34, Method: Composition-based stats.
Identities = 74/140 (52%), Positives = 100/140 (71%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M +RI+GIDPGLRRTGWG++ G L +++ G + S LA RL +L+EGLT ++
Sbjct: 14 MTTDVRILGIDPGLRRTGWGLITARGSKLSYLACGVVTSDGDLPLALRLRELHEGLTRIV 73
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
+ P+E +VE+ FVNKDA ATLKLG ARA+A+L PALA +PV+EYA N +KK V G GH
Sbjct: 74 TTYTPDEVSVEETFVNKDAQATLKLGHARAVALLVPALAGLPVAEYAANLVKKTVAGNGH 133
Query: 121 GDKKQIHMMLKMLMPESFFK 140
+K QI M+K L+P++ FK
Sbjct: 134 AEKVQIQAMVKFLLPKAEFK 153
>gi|159901265|ref|YP_001547512.1| Holliday junction resolvase [Herpetosiphon aurantiacus ATCC 23779]
gi|159894304|gb|ABX07384.1| crossover junction endodeoxyribonuclease RuvC [Herpetosiphon
aurantiacus ATCC 23779]
Length = 165
Score = 148 bits (374), Expect = 2e-34, Method: Composition-based stats.
Identities = 50/136 (36%), Positives = 83/136 (61%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RIIGIDPG GWGI+D G +L V+ G + +Q L RL +Y L V++++R
Sbjct: 1 MRIIGIDPGTAIMGWGIIDADGSDLTMVAYGAFTTPAKQPLPDRLVSIYNDLAHVLEHYR 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P AAVE++F K+ + + AR +A+L+ A++P+ EY P ++K+AV+G G+ DK+
Sbjct: 61 PSVAAVEELFFAKNVTTAMAVSHARGVALLALRQAKLPIFEYKPLSVKQAVVGYGNADKQ 120
Query: 125 QIHMMLKMLMPESFFK 140
Q+ +++M +
Sbjct: 121 QMQHLVQMTLNLDHIP 136
>gi|294635833|ref|ZP_06714288.1| crossover junction endodeoxyribonuclease RuvC [Edwardsiella tarda
ATCC 23685]
gi|291090805|gb|EFE23366.1| crossover junction endodeoxyribonuclease RuvC [Edwardsiella tarda
ATCC 23685]
Length = 173
Score = 148 bits (374), Expect = 2e-34, Method: Composition-based stats.
Identities = 62/157 (39%), Positives = 95/157 (60%), Gaps = 1/157 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G L ++ SG I + V L RL +Y G++++I + P
Sbjct: 3 IILGIDPGSRITGYGVIRQCGRQLDYLGSGCIRTAV-DDLPTRLKLVYAGVSEIITQFNP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQVF+ K+A + LKLGQAR AI++ +PV EYA IK+ V+G G +K Q
Sbjct: 62 DYFAIEQVFMAKNADSALKLGQARGAAIVAAVNRDLPVFEYAARQIKQTVVGNGGAEKAQ 121
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGY 162
+ M++ L+ DAADALA+A+ H + + +
Sbjct: 122 VQHMVRSLLKLPANPQADAADALAVAITHCHVSQNAL 158
>gi|311279237|ref|YP_003941468.1| crossover junction endodeoxyribonuclease RuvC [Enterobacter cloacae
SCF1]
gi|308748432|gb|ADO48184.1| crossover junction endodeoxyribonuclease RuvC [Enterobacter cloacae
SCF1]
Length = 173
Score = 148 bits (374), Expect = 2e-34, Method: Composition-based stats.
Identities = 52/136 (38%), Positives = 83/136 (61%), Gaps = 1/136 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G L ++ SG I + L RL +Y G+T++I ++P
Sbjct: 3 IILGIDPGSRVTGYGVIRQVGRQLTYLGSGCIRT-KVDDLPSRLKLIYAGVTEIITQFQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQVF+ K+A + LKLGQAR +AI++ +PV EYA +K+ V+G+G +K Q
Sbjct: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQDLPVFEYAARQVKQTVVGIGSAEKSQ 121
Query: 126 IHMMLKMLMPESFFKG 141
+ M++ L+
Sbjct: 122 VQHMVRTLLKLPANPQ 137
>gi|161613546|ref|YP_001587511.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
serovar Paratyphi B str. SPB7]
gi|167552466|ref|ZP_02346219.1| crossover junction endodeoxyribonuclease RuvC [Salmonella enterica
subsp. enterica serovar Saintpaul str. SARA29]
gi|168259827|ref|ZP_02681800.1| crossover junction endodeoxyribonuclease RuvC [Salmonella enterica
subsp. enterica serovar Hadar str. RI_05P066]
gi|198245392|ref|YP_002215187.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
serovar Dublin str. CT_02021853]
gi|200389414|ref|ZP_03216025.1| crossover junction endodeoxyribonuclease RuvC [Salmonella enterica
subsp. enterica serovar Virchow str. SL491]
gi|189046078|sp|A9MUC2|RUVC_SALPB RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|226698764|sp|B5FSN3|RUVC_SALDC RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|161362910|gb|ABX66678.1| hypothetical protein SPAB_01266 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|197939908|gb|ACH77241.1| crossover junction endodeoxyribonuclease RuvC [Salmonella enterica
subsp. enterica serovar Dublin str. CT_02021853]
gi|199601859|gb|EDZ00405.1| crossover junction endodeoxyribonuclease RuvC [Salmonella enterica
subsp. enterica serovar Virchow str. SL491]
gi|205322935|gb|EDZ10774.1| crossover junction endodeoxyribonuclease RuvC [Salmonella enterica
subsp. enterica serovar Saintpaul str. SARA29]
gi|205350788|gb|EDZ37419.1| crossover junction endodeoxyribonuclease RuvC [Salmonella enterica
subsp. enterica serovar Hadar str. RI_05P066]
gi|326622935|gb|EGE29280.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
serovar Dublin str. 3246]
Length = 173
Score = 148 bits (374), Expect = 2e-34, Method: Composition-based stats.
Identities = 52/136 (38%), Positives = 83/136 (61%), Gaps = 1/136 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G L ++ SG I + L RL +Y G+T++I ++P
Sbjct: 3 IILGIDPGSRITGYGVIRQVGRQLTYLGSGCIRT-KVDDLPSRLKLIYAGVTEIITQFQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQVF+ K+A + LKLGQAR +AI++ +PV EYA +K+ V+G+G +K Q
Sbjct: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121
Query: 126 IHMMLKMLMPESFFKG 141
+ M++ L+
Sbjct: 122 VQHMVRTLLKLPANPQ 137
>gi|52841518|ref|YP_095317.1| Holliday junction resolvase [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|81603398|sp|Q5ZW01|RUVC_LEGPH RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|52628629|gb|AAU27370.1| crossover junction endodeoxyribonuclease RuvC [Legionella
pneumophila subsp. pneumophila str. Philadelphia 1]
Length = 174
Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 59/163 (36%), Positives = 102/163 (62%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ + + ++ SG I + L+ +L Q+Y+G+ +++ ++ P
Sbjct: 3 IILGIDPGSRVTGYGLIKESDRKIAYIDSGCIRTSNDTELSHKLLQIYDGICELMDHYSP 62
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
E A+EQ+F++ + + LKLG AR +A+++ A R + EY+ IK++V+G G +K Q
Sbjct: 63 TEVAIEQIFMHNNPNSALKLGHARGVAMVAAASHRAKIFEYSAREIKQSVVGYGAAEKDQ 122
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
+ M+ L+ + KDAADALAIA+CH++ N I S+
Sbjct: 123 VSHMVVELLQLNRAPQKDAADALAIAICHSHMRNGLSKLIGSR 165
>gi|51892297|ref|YP_074988.1| Holliday junction endodeoxyribonuclease RuvC [Symbiobacterium
thermophilum IAM 14863]
gi|81610584|sp|Q67Q99|RUVC_SYMTH RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|51855986|dbj|BAD40144.1| Holliday junction endodeoxyribonuclease RuvC [Symbiobacterium
thermophilum IAM 14863]
Length = 166
Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 48/137 (35%), Positives = 75/137 (54%), Gaps = 1/137 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAG-DNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+RI+GIDPG R G+GIV+ AG V G + + RL LY GL D++
Sbjct: 1 MRILGIDPGTARMGYGIVEDAGAGRERAVEYGCLETPPDMRPELRLQALYRGLADLMARH 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
RP+ AVE++F ++ + +GQAR + +L+ A + +PV E+ P +K AV G G +K
Sbjct: 61 RPDALAVEELFFGRNVTTAIHVGQARGVVLLAAADSGVPVREFTPMQVKMAVTGYGRANK 120
Query: 124 KQIHMMLKMLMPESFFK 140
Q+ M++ L+
Sbjct: 121 AQVQRMVQALLGLPEIP 137
>gi|50085173|ref|YP_046683.1| Holliday junction resolvase [Acinetobacter sp. ADP1]
gi|49531149|emb|CAG68861.1| holliday junction nuclease [Acinetobacter sp. ADP1]
Length = 191
Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 67/160 (41%), Positives = 102/160 (63%), Gaps = 2/160 (1%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
IIGIDPG R TG+GI++ G+ L F+ +GTI + Q + RL +++ G+ ++K P
Sbjct: 14 IIGIDPGSRLTGYGIIEKNGNELRFIDAGTIRTES-QDMPERLKRIFAGVERIVKFHGPT 72
Query: 67 EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
+AAVEQVF+ ++ + LKLGQAR AI + + V+EY IK++V+G G DK+Q+
Sbjct: 73 QAAVEQVFMAQNPDSALKLGQARGAAIAALVNLDLEVAEYTARQIKQSVVGYGAADKEQV 132
Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
MM+ ++ + DAADALA A+CHA+ + S K+A
Sbjct: 133 QMMVMRILNLTIKPQSDAADALAAAICHAHASGS-MSKMA 171
>gi|224827242|ref|ZP_03700336.1| crossover junction endodeoxyribonuclease RuvC [Lutiella nitroferrum
2002]
gi|224600531|gb|EEG06720.1| crossover junction endodeoxyribonuclease RuvC [Lutiella nitroferrum
2002]
Length = 176
Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 58/138 (42%), Positives = 84/138 (60%)
Query: 4 SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
S RI+GIDPG R TG+G++DV G +V+SG I + LA R+ + +GL V+ +
Sbjct: 2 SRRILGIDPGSRITGFGVIDVIGQQRHYVASGCIRTPQGAPLAERIKVIVDGLFGVVDTY 61
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
RP EAAVEQVFVN + ATL LGQAR + + L ++ V+EY +K++V+G G K
Sbjct: 62 RPGEAAVEQVFVNVNPAATLMLGQARGAVLAALVLKQLTVAEYTALQVKQSVVGHGKAPK 121
Query: 124 KQIHMMLKMLMPESFFKG 141
+Q+ M+ L+ S
Sbjct: 122 EQVQAMIVRLLNLSGTPQ 139
>gi|153875114|ref|ZP_02003051.1| Crossover junction endodeoxyribonuclease ruvC [Beggiatoa sp. PS]
gi|152068423|gb|EDN66950.1| Crossover junction endodeoxyribonuclease ruvC [Beggiatoa sp. PS]
Length = 155
Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 70/152 (46%), Positives = 105/152 (69%), Gaps = 1/152 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
RI+GIDPG R TG+G+++V + +++SG I + + SL RL ++Y G++ +I+ +P
Sbjct: 5 RILGIDPGSRLTGFGVIEVHRQQVIYITSGCIRTQSK-SLPSRLQEIYAGISQIIEQAQP 63
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+AVEQVF+ ++A + LKLGQAR AI++ + V EYAP IK+AV+G GH DK Q
Sbjct: 64 TISAVEQVFMYRNADSALKLGQARGAAIVACVQHGLSVYEYAPTQIKQAVVGKGHADKIQ 123
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYH 157
+ M+K+L+ S DAADALA+A+CHA+H
Sbjct: 124 VQHMVKVLLSLSNIPQVDAADALAVALCHAHH 155
>gi|254294769|ref|YP_003060792.1| Holliday junction resolvase [Hirschia baltica ATCC 49814]
gi|254043300|gb|ACT60095.1| crossover junction endodeoxyribonuclease RuvC [Hirschia baltica
ATCC 49814]
Length = 167
Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 59/136 (43%), Positives = 89/136 (65%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M K++RI+G+DPGLR TGWGI+D+ G L +VS G I ++ RL + GL +VI
Sbjct: 1 MSKAVRILGVDPGLRNTGWGIIDMVGPKLLWVSHGVIKPKTSLPMSERLAFIVNGLNEVI 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
+ +P+EA +E+ FVN + +TL LGQAR A+ +LA + V+E+A +K+ V+G G
Sbjct: 61 ETHKPDEAGIEETFVNVNPKSTLLLGQARGAAMAGLSLAGLSVAEFAATKVKQCVVGTGA 120
Query: 121 GDKKQIHMMLKMLMPE 136
DK Q+ M+K L+P+
Sbjct: 121 ADKDQVTFMIKRLLPK 136
>gi|126663029|ref|ZP_01734027.1| Holliday junction resolvase [Flavobacteria bacterium BAL38]
gi|126624687|gb|EAZ95377.1| Holliday junction resolvase [Flavobacteria bacterium BAL38]
Length = 168
Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 43/144 (29%), Positives = 78/144 (54%), Gaps = 1/144 (0%)
Query: 17 TGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVN 76
G+G++ V + F+ ++ + +L ++E ++I+ P+E A+E F
Sbjct: 1 MGFGLIKVVNKKMEFLQLNELILSKYDNHYQKLKVIFERTIELIETHHPDEIAIEAPFFG 60
Query: 77 KDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPE 136
K+ + LKLG+A+ +A+ + IP++EY P IK A+ G G+ K+Q+ ML+ L+
Sbjct: 61 KNVQSMLKLGRAQGVAMAAGLSRDIPITEYEPKKIKMAITGNGNASKEQVAKMLQQLLGL 120
Query: 137 SF-FKGKDAADALAIAVCHAYHAN 159
K D+ D LA AVCH +++
Sbjct: 121 KELPKNLDSTDGLAAAVCHFFNSG 144
>gi|110635508|ref|YP_675716.1| Holliday junction resolvase [Mesorhizobium sp. BNC1]
gi|123161736|sp|Q11DH4|RUVC_MESSB RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|110286492|gb|ABG64551.1| Holliday junction endonuclease RuvC [Chelativorans sp. BNC1]
Length = 171
Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 100/166 (60%), Positives = 133/166 (80%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M +IRIIGIDPGLRRTGW +++ G++L F+ +GT+ S + LA RLCQL++GL +++
Sbjct: 1 MTGTIRIIGIDPGLRRTGWAVIETVGNSLRFIGAGTVRSNDKADLASRLCQLHDGLAEIL 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
P+EAAVE FVNKDAVATLKLGQAR IA+L PA A + V+EYAPN +KKAVIGVGH
Sbjct: 61 HLHMPQEAAVEATFVNKDAVATLKLGQARGIAMLVPARAGLRVAEYAPNAVKKAVIGVGH 120
Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
G+K+QIHMM+K+LMP++ F G DAADA+A+A+CHA+H S +++A
Sbjct: 121 GEKRQIHMMVKVLMPKALFDGDDAADAIAVAICHAHHRQSPAWRLA 166
>gi|169824514|ref|YP_001692125.1| crossover junction endodeoxyribonuclease [Finegoldia magna ATCC
29328]
gi|238687749|sp|B0S1J5|RUVC_FINM2 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|167831319|dbj|BAG08235.1| crossover junction endodeoxyribonuclease [Finegoldia magna ATCC
29328]
Length = 164
Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 42/138 (30%), Positives = 77/138 (55%), Gaps = 1/138 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+R++GIDPG+ G+ I+D + + + G I + + +L RL +Y+ + +I ++
Sbjct: 1 MRVLGIDPGIAIVGYSILDYDNNKIKCLEYGCITTSSKSALPDRLSFIYQEMNKIIDEFQ 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P++ A E++F NK+ + + QAR + ILS + + EY P IK+AV+G G DK+
Sbjct: 61 PDDCAFEELFFNKNVKTAITVSQARGVEILSCINKDLRLYEYTPLQIKQAVVGYGRADKR 120
Query: 125 QIHMMLKMLMP-ESFFKG 141
Q+ +K ++ K
Sbjct: 121 QVQETVKTILKFNEIPKP 138
>gi|307130886|ref|YP_003882902.1| component of RuvABC resolvasome, endonuclease [Dickeya dadantii
3937]
gi|306528415|gb|ADM98345.1| component of RuvABC resolvasome, endonuclease [Dickeya dadantii
3937]
Length = 173
Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 54/136 (39%), Positives = 81/136 (59%), Gaps = 1/136 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+GIV G + ++ SG I + V L RL +Y G+++VI ++P
Sbjct: 3 IILGIDPGSRVTGYGIVRQQGRQISYLGSGCIRTAV-DDLPTRLKLIYAGVSEVITQFQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
A+EQVF+ ++A + LKLGQAR AI++ +PV EYA +K+ V+G G +K Q
Sbjct: 62 NYFAIEQVFMARNADSALKLGQARGAAIVAAVNQSLPVFEYAARQVKQTVVGTGAAEKSQ 121
Query: 126 IHMMLKMLMPESFFKG 141
+ M+K L+
Sbjct: 122 VQHMVKTLLKLPASPQ 137
>gi|296101798|ref|YP_003611944.1| Holliday junction resolvase [Enterobacter cloacae subsp. cloacae
ATCC 13047]
gi|295056257|gb|ADF60995.1| Holliday junction resolvase [Enterobacter cloacae subsp. cloacae
ATCC 13047]
Length = 173
Score = 148 bits (373), Expect = 3e-34, Method: Composition-based stats.
Identities = 52/136 (38%), Positives = 84/136 (61%), Gaps = 1/136 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G L ++ SG I + + L RL +Y G+T++I ++P
Sbjct: 3 IILGIDPGSRVTGYGVIRQVGRQLTYLGSGCIRT-KVEDLPSRLKLIYAGVTEIITQFQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQVF+ K+A + LKLGQAR +AI++ +PV EYA +K+ V+G+G +K Q
Sbjct: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQDLPVFEYAARQVKQTVVGIGSAEKSQ 121
Query: 126 IHMMLKMLMPESFFKG 141
+ M++ L+
Sbjct: 122 VQHMVRTLLKLPANPQ 137
>gi|254473255|ref|ZP_05086653.1| crossover junction endodeoxyribonuclease RuvC [Pseudovibrio sp.
JE062]
gi|211957976|gb|EEA93178.1| crossover junction endodeoxyribonuclease RuvC [Pseudovibrio sp.
JE062]
Length = 166
Score = 148 bits (373), Expect = 3e-34, Method: Composition-based stats.
Identities = 94/162 (58%), Positives = 123/162 (75%)
Query: 8 IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEE 67
+G+DPGLR TGWGI+D G+ + F++SGTI S + SLA RL QLY GL +VI+ + P E
Sbjct: 1 MGVDPGLRNTGWGIIDAKGNRVSFIASGTIQSNNKYSLAERLKQLYTGLQEVIERYGPAE 60
Query: 68 AAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIH 127
AAVE FVNKDA ATLKLGQAR IA+L P+L + VSEYAPN +KK V+G GH +K+QI
Sbjct: 61 AAVENTFVNKDAGATLKLGQARGIALLVPSLHNLVVSEYAPNLVKKTVVGTGHAEKEQIR 120
Query: 128 MMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQD 169
MM+K+LMP++ F DAADALAIA+CH++H S ++A+ +
Sbjct: 121 MMVKVLMPKATFNSDDAADALAIAICHSHHRGSVTGRLAAAE 162
>gi|146312077|ref|YP_001177151.1| Holliday junction resolvase [Enterobacter sp. 638]
gi|167012680|sp|A4WBM0|RUVC_ENT38 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|145318953|gb|ABP61100.1| Holliday junction endonuclease RuvC [Enterobacter sp. 638]
Length = 173
Score = 148 bits (373), Expect = 3e-34, Method: Composition-based stats.
Identities = 51/136 (37%), Positives = 81/136 (59%), Gaps = 1/136 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G L ++ SG I + L RL +Y G++++I ++P
Sbjct: 3 IILGIDPGSRITGYGVIRQVGRQLTYLGSGCIRT-KVDDLPSRLKLIYAGVSEIITQFQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQVF+ K+A + LKLGQAR +AI++ +PV EYA +K+ V+G G K Q
Sbjct: 62 DFFAIEQVFMAKNADSALKLGQARGVAIVAAVNQDLPVFEYAARQVKQTVVGTGGAAKSQ 121
Query: 126 IHMMLKMLMPESFFKG 141
+ M++ L+
Sbjct: 122 VQHMVRTLLKLQANPQ 137
>gi|257095743|ref|YP_003169384.1| crossover junction endodeoxyribonuclease RuvC [Candidatus
Accumulibacter phosphatis clade IIA str. UW-1]
gi|257048267|gb|ACV37455.1| crossover junction endodeoxyribonuclease RuvC [Candidatus
Accumulibacter phosphatis clade IIA str. UW-1]
Length = 184
Score = 148 bits (373), Expect = 3e-34, Method: Composition-based stats.
Identities = 56/139 (40%), Positives = 87/139 (62%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+G+DPGLR TG+G++ G+ L +++SG I + + SL RL ++ L +++ +
Sbjct: 9 LRILGVDPGLRITGFGLIAKMGNRLGYLASGCIRTDAKASLPARLGTIHAALRELVAEHQ 68
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P++AAVE VFVN + +TL LGQAR AI + + V+EY IK+AV+G GH DK
Sbjct: 69 PDQAAVEIVFVNVNPQSTLLLGQARGAAITGLVSSGLEVAEYTALQIKQAVVGNGHADKL 128
Query: 125 QIHMMLKMLMPESFFKGKD 143
Q+ M++ L+ S D
Sbjct: 129 QVQHMVRRLLSLSADPSPD 147
>gi|157371018|ref|YP_001479007.1| Holliday junction resolvase [Serratia proteamaculans 568]
gi|167012682|sp|A8GFI9|RUVC_SERP5 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|157322782|gb|ABV41879.1| crossover junction endodeoxyribonuclease RuvC [Serratia
proteamaculans 568]
Length = 173
Score = 148 bits (373), Expect = 3e-34, Method: Composition-based stats.
Identities = 51/136 (37%), Positives = 83/136 (61%), Gaps = 1/136 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G L +V+SG I + V + RL +Y G++++I ++P
Sbjct: 3 IILGIDPGSRVTGYGLIRQQGRQLTYVASGCIRTVV-DDMPTRLKLIYAGVSEIITQFKP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQVF+ K+ + LKLGQAR +AI++ + V EYA +K+ V+G G +K Q
Sbjct: 62 DFFAIEQVFMAKNPDSALKLGQARGVAIVAAVNQDLEVFEYAARQVKQTVVGTGAAEKAQ 121
Query: 126 IHMMLKMLMPESFFKG 141
+ M++ L+ S
Sbjct: 122 VQHMVRSLLKLSANPQ 137
>gi|328542536|ref|YP_004302645.1| Crossover junction endodeoxyribonuclease ruvC [polymorphum gilvum
SL003B-26A1]
gi|326412282|gb|ADZ69345.1| Crossover junction endodeoxyribonuclease ruvC [Polymorphum gilvum
SL003B-26A1]
Length = 171
Score = 148 bits (373), Expect = 3e-34, Method: Composition-based stats.
Identities = 95/168 (56%), Positives = 124/168 (73%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M IRI+GIDPGLRRTGWG+++ G+ L F+ +GT+ S ++ LA RL QL++GL+ ++
Sbjct: 1 MMHPIRILGIDPGLRRTGWGLIEALGNRLTFLGAGTVTSDDKRGLAERLVQLHDGLSAIV 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
P EAAVE FVNKDA ATLKLGQAR IA+L PALA +PV+EYAPN +KK V+G GH
Sbjct: 61 AREEPAEAAVEHTFVNKDAGATLKLGQARGIALLVPALAGLPVAEYAPNLVKKTVVGTGH 120
Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
+K+QI M+K+LMP + F DAADALAIA+CHA+H S ++A
Sbjct: 121 AEKEQIRAMVKILMPRARFDTDDAADALAIAICHAHHRGSAQARLAEA 168
>gi|78485237|ref|YP_391162.1| crossover junction endodeoxyribonuclease RuvC [Thiomicrospira
crunogena XCL-2]
gi|123555644|sp|Q31H85|RUVC_THICR RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|78363523|gb|ABB41488.1| crossover junction endodeoxyribonuclease RuvC [Thiomicrospira
crunogena XCL-2]
Length = 172
Score = 148 bits (373), Expect = 3e-34, Method: Composition-based stats.
Identities = 51/142 (35%), Positives = 83/142 (58%), Gaps = 1/142 (0%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M + RI+GIDPG R+TG+GI++ + +VSSG I A RL ++E + +I
Sbjct: 1 MAQLKRILGIDPGSRKTGFGIIESGRFHPNYVSSGVIRVEKLTG-AQRLKTIFESVCQII 59
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
++P A+E+VFV K+ + +KLGQAR + + + A+ IP+ EY P IK ++G GH
Sbjct: 60 DQYQPHVMAIEKVFVYKNPSSAIKLGQARGVILCAAAIKEIPIMEYTPTQIKSTIVGQGH 119
Query: 121 GDKKQIHMMLKMLMPESFFKGK 142
K Q+ M++ L+ + +
Sbjct: 120 ATKDQVQFMVQNLLKLTESPQE 141
>gi|302380677|ref|ZP_07269142.1| crossover junction endodeoxyribonuclease RuvC [Finegoldia magna
ACS-171-V-Col3]
gi|302311620|gb|EFK93636.1| crossover junction endodeoxyribonuclease RuvC [Finegoldia magna
ACS-171-V-Col3]
Length = 164
Score = 148 bits (373), Expect = 3e-34, Method: Composition-based stats.
Identities = 42/138 (30%), Positives = 77/138 (55%), Gaps = 1/138 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+R++GIDPG+ G+ I+D + + + G I + + +L RL +Y+ + +I ++
Sbjct: 1 MRVLGIDPGIAIVGYSILDYDNNKIKCLEYGCITTSSKSALPDRLSFIYQEMNKIIDEFQ 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P++ A E++F NK+ + + QAR + ILS + + EY P IK+AV+G G DK+
Sbjct: 61 PDDCAFEELFFNKNVKTAITVSQARGVEILSCINKDLSLYEYTPLQIKQAVVGYGRADKR 120
Query: 125 QIHMMLKMLMP-ESFFKG 141
Q+ +K ++ K
Sbjct: 121 QVQETVKTILKFNEIPKP 138
>gi|333003474|gb|EGK23017.1| crossover junction endodeoxyribonuclease RuvC [Shigella flexneri
VA-6]
Length = 173
Score = 148 bits (373), Expect = 3e-34, Method: Composition-based stats.
Identities = 52/136 (38%), Positives = 83/136 (61%), Gaps = 1/136 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G L ++ SG I + L RL +Y G+T++I ++P
Sbjct: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRT-KVDDLPSRLKLIYAGVTEIITQFQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQVF+ K+A + LKLGQAR +AI++ +PV EYA +K+ V+G+G +K Q
Sbjct: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGMGSAEKSQ 121
Query: 126 IHMMLKMLMPESFFKG 141
+ M++ L+
Sbjct: 122 VQHMVRTLLKLPANPQ 137
>gi|157145358|ref|YP_001452677.1| Holliday junction resolvase [Citrobacter koseri ATCC BAA-895]
gi|166233188|sp|A8AFH8|RUVC_CITK8 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|157082563|gb|ABV12241.1| hypothetical protein CKO_01098 [Citrobacter koseri ATCC BAA-895]
Length = 173
Score = 148 bits (373), Expect = 3e-34, Method: Composition-based stats.
Identities = 52/136 (38%), Positives = 83/136 (61%), Gaps = 1/136 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G L ++ SG I + L RL +Y G+T++I ++P
Sbjct: 3 IILGIDPGSRVTGYGVIRQVGRQLTYLGSGCIRT-KVDDLPSRLKLIYAGVTEIITQFQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQVF+ K+A + LKLGQAR +AI++ +PV EYA +K+ V+G+G +K Q
Sbjct: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQDLPVFEYAARQVKQTVVGIGSAEKSQ 121
Query: 126 IHMMLKMLMPESFFKG 141
+ M++ L+
Sbjct: 122 VQHMVRTLLKLPANPQ 137
>gi|237809452|ref|YP_002893892.1| crossover junction endodeoxyribonuclease RuvC [Tolumonas auensis
DSM 9187]
gi|259495696|sp|C4LBN2|RUVC_TOLAT RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|237501713|gb|ACQ94306.1| crossover junction endodeoxyribonuclease RuvC [Tolumonas auensis
DSM 9187]
Length = 173
Score = 148 bits (373), Expect = 3e-34, Method: Composition-based stats.
Identities = 63/163 (38%), Positives = 106/163 (65%), Gaps = 2/163 (1%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ + ++ SG I + Q L+ +L Q+Y+G++++I ++P
Sbjct: 3 IILGIDPGSRITGYGVIRQQAGKVEYLGSGCIRTSGEQ-LSDKLKQIYDGISEIILQFKP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQVF+ K+ + LKLGQAR AI++ A +PV+EYA +K++V+G G DK+Q
Sbjct: 62 DLFAIEQVFMAKNPDSALKLGQARGSAIVAAVNAGLPVAEYAARQVKQSVVGTGAADKEQ 121
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
+ M+K L+ DAADALA+A+CH++ + ++A +
Sbjct: 122 VQHMVKQLLKLPACPQADAADALAVALCHSHTQQT-LIRMAGK 163
>gi|91205993|ref|YP_538348.1| Holliday junction resolvase [Rickettsia bellii RML369-C]
gi|123266180|sp|Q1RHA5|RUVC_RICBR RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|91069537|gb|ABE05259.1| Crossover junction endodeoxyribonuclease RuvC [Rickettsia bellii
RML369-C]
Length = 157
Score = 148 bits (373), Expect = 3e-34, Method: Composition-based stats.
Identities = 56/150 (37%), Positives = 84/150 (56%), Gaps = 1/150 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ ++GIDP L GW +V L +++SG I + + + RL + L VI ++
Sbjct: 1 MIVLGIDPALGSLGWAVVAKESAKLKYLASGVIKTSSKDEIHHRLSYINSILEKVILEYK 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P AA+E+ FVN ++V +LKLG AR + + + E+ PNTIKK V G GH +K
Sbjct: 61 PNMAAIEETFVNTNSVTSLKLGYARGAIMSLIGRYDLDMREFKPNTIKKTVTGYGHAEKD 120
Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVC 153
QI M+K+L+P + D ADA+AIA
Sbjct: 121 QILHMIKLLLPGTAAITNSDEADAVAIAYT 150
>gi|15802276|ref|NP_288300.1| Holliday junction resolvase [Escherichia coli O157:H7 EDL933]
gi|15831827|ref|NP_310600.1| Holliday junction resolvase [Escherichia coli O157:H7 str. Sakai]
gi|16129816|ref|NP_416377.1| component of RuvABC resolvasome, endonuclease [Escherichia coli
str. K-12 substr. MG1655]
gi|82543702|ref|YP_407649.1| Holliday junction resolvase [Shigella boydii Sb227]
gi|82776449|ref|YP_402798.1| Holliday junction resolvase [Shigella dysenteriae Sd197]
gi|89108703|ref|AP_002483.1| component of RuvABC resolvasome, endonuclease [Escherichia coli
str. K-12 substr. W3110]
gi|91211088|ref|YP_541074.1| Holliday junction resolvase [Escherichia coli UTI89]
gi|110641981|ref|YP_669711.1| Holliday junction resolvase [Escherichia coli 536]
gi|157161332|ref|YP_001458650.1| Holliday junction resolvase [Escherichia coli HS]
gi|168747890|ref|ZP_02772912.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
O157:H7 str. EC4113]
gi|168757897|ref|ZP_02782904.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
O157:H7 str. EC4401]
gi|168762343|ref|ZP_02787350.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
O157:H7 str. EC4501]
gi|168770846|ref|ZP_02795853.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
O157:H7 str. EC4486]
gi|168776590|ref|ZP_02801597.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
O157:H7 str. EC4196]
gi|168783163|ref|ZP_02808170.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
O157:H7 str. EC4076]
gi|168801901|ref|ZP_02826908.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
O157:H7 str. EC508]
gi|170019792|ref|YP_001724746.1| Holliday junction resolvase [Escherichia coli ATCC 8739]
gi|170081519|ref|YP_001730839.1| component of RuvABC resolvasome, endonuclease [Escherichia coli
str. K-12 substr. DH10B]
gi|170682372|ref|YP_001743381.1| Holliday junction resolvase [Escherichia coli SMS-3-5]
gi|170769344|ref|ZP_02903797.1| crossover junction endodeoxyribonuclease RuvC [Escherichia albertii
TW07627]
gi|187733397|ref|YP_001879759.1| Holliday junction resolvase [Shigella boydii CDC 3083-94]
gi|188495826|ref|ZP_03003096.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
53638]
gi|191168063|ref|ZP_03029862.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
B7A]
gi|191173012|ref|ZP_03034546.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
F11]
gi|193066044|ref|ZP_03047101.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
E22]
gi|193069930|ref|ZP_03050879.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
E110019]
gi|194429660|ref|ZP_03062178.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
B171]
gi|194439042|ref|ZP_03071125.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
101-1]
gi|195940291|ref|ZP_03085673.1| Holliday junction resolvase [Escherichia coli O157:H7 str. EC4024]
gi|208810727|ref|ZP_03252603.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
O157:H7 str. EC4206]
gi|208816719|ref|ZP_03257839.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
O157:H7 str. EC4045]
gi|208820669|ref|ZP_03260989.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
O157:H7 str. EC4042]
gi|209397411|ref|YP_002270946.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
O157:H7 str. EC4115]
gi|209919230|ref|YP_002293314.1| Holliday junction resolvase [Escherichia coli SE11]
gi|215487076|ref|YP_002329507.1| Holliday junction resolvase [Escherichia coli O127:H6 str.
E2348/69]
gi|217328864|ref|ZP_03444945.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
O157:H7 str. TW14588]
gi|218548576|ref|YP_002382367.1| Holliday junction resolvase [Escherichia fergusonii ATCC 35469]
gi|218554451|ref|YP_002387364.1| Holliday junction resolvase [Escherichia coli IAI1]
gi|218558728|ref|YP_002391641.1| Holliday junction resolvase [Escherichia coli S88]
gi|218689801|ref|YP_002398013.1| Holliday junction resolvase [Escherichia coli ED1a]
gi|218695429|ref|YP_002403096.1| Holliday junction resolvase [Escherichia coli 55989]
gi|218699565|ref|YP_002407194.1| Holliday junction resolvase [Escherichia coli IAI39]
gi|218705364|ref|YP_002412883.1| Holliday junction resolvase [Escherichia coli UMN026]
gi|227885709|ref|ZP_04003514.1| Holliday junction resolvase [Escherichia coli 83972]
gi|238901078|ref|YP_002926874.1| component of RuvABC resolvasome, endonuclease [Escherichia coli
BW2952]
gi|253773180|ref|YP_003036011.1| Holliday junction resolvase [Escherichia coli 'BL21-Gold(DE3)pLysS
AG']
gi|254161923|ref|YP_003045031.1| Holliday junction resolvase [Escherichia coli B str. REL606]
gi|254793487|ref|YP_003078324.1| Holliday junction resolvase [Escherichia coli O157:H7 str. TW14359]
gi|256017933|ref|ZP_05431798.1| Holliday junction resolvase [Shigella sp. D9]
gi|256022471|ref|ZP_05436336.1| Holliday junction resolvase [Escherichia sp. 4_1_40B]
gi|260844206|ref|YP_003221984.1| endonuclease RuvC [Escherichia coli O103:H2 str. 12009]
gi|260855803|ref|YP_003229694.1| endonuclease RuvC [Escherichia coli O26:H11 str. 11368]
gi|260868398|ref|YP_003234800.1| endonuclease RuvC [Escherichia coli O111:H- str. 11128]
gi|261227636|ref|ZP_05941917.1| Holliday junction resolvase [Escherichia coli O157:H7 str.
FRIK2000]
gi|261258198|ref|ZP_05950731.1| Holliday junction resolvase [Escherichia coli O157:H7 str. FRIK966]
gi|291283045|ref|YP_003499863.1| Crossover junction endodeoxyribonuclease ruvC [Escherichia coli
O55:H7 str. CB9615]
gi|293405358|ref|ZP_06649350.1| crossover junction endodeoxyribonuclease ruvC [Escherichia coli
FVEC1412]
gi|293410175|ref|ZP_06653751.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
B354]
gi|293415178|ref|ZP_06657821.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
B185]
gi|293446250|ref|ZP_06662672.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
B088]
gi|298381000|ref|ZP_06990599.1| crossover junction endodeoxyribonuclease ruvC [Escherichia coli
FVEC1302]
gi|300816245|ref|ZP_07096467.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
107-1]
gi|300824195|ref|ZP_07104313.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
119-7]
gi|300899113|ref|ZP_07117396.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
198-1]
gi|300917560|ref|ZP_07134215.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
115-1]
gi|300924952|ref|ZP_07140879.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
182-1]
gi|300928894|ref|ZP_07144399.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
187-1]
gi|300935838|ref|ZP_07150796.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
21-1]
gi|300951485|ref|ZP_07165320.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
116-1]
gi|300956624|ref|ZP_07168903.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
175-1]
gi|300982167|ref|ZP_07175902.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
200-1]
gi|300994108|ref|ZP_07180691.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
45-1]
gi|301018301|ref|ZP_07182810.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
69-1]
gi|301029313|ref|ZP_07192410.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
196-1]
gi|301050783|ref|ZP_07197640.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
185-1]
gi|301327652|ref|ZP_07220860.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
78-1]
gi|301645621|ref|ZP_07245550.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
146-1]
gi|306814307|ref|ZP_07448473.1| Holliday junction resolvase [Escherichia coli NC101]
gi|307138526|ref|ZP_07497882.1| Holliday junction resolvase [Escherichia coli H736]
gi|307314225|ref|ZP_07593835.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli W]
gi|309794244|ref|ZP_07688668.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
145-7]
gi|312967066|ref|ZP_07781284.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
2362-75]
gi|312969904|ref|ZP_07784087.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
1827-70]
gi|331657912|ref|ZP_08358874.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
TA206]
gi|331663359|ref|ZP_08364269.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
TA143]
gi|331668558|ref|ZP_08369406.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
TA271]
gi|331683369|ref|ZP_08383970.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
H299]
gi|67472394|sp|P0A814|RUVC_ECOLI RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|67472395|sp|P0A815|RUVC_ECOL6 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|67472396|sp|P0A816|RUVC_ECO57 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|90146479|sp|Q322D7|RUVC_SHIBS RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|90146483|sp|Q32H98|RUVC_SHIDS RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|122423490|sp|Q1RAS1|RUVC_ECOUT RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|123343925|sp|Q0TGW9|RUVC_ECOL5 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|167012679|sp|A8A163|RUVC_ECOHS RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|187611416|sp|A1AC24|RUVC_ECOK1 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|189046066|sp|B1J0M5|RUVC_ECOLC RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|226698753|sp|B5YR08|RUVC_ECO5E RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|226698754|sp|B6IBU2|RUVC_ECOSE RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|226725469|sp|B7MBS2|RUVC_ECO45 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|226725470|sp|B7NS55|RUVC_ECO7I RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|226725471|sp|B7M2F4|RUVC_ECO8A RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|226725472|sp|B7NBL4|RUVC_ECOLU RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|226725473|sp|B1LD08|RUVC_ECOSM RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|226725474|sp|B7LPI1|RUVC_ESCF3 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|229484902|sp|B1XHD1|RUVC_ECODH RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|238691720|sp|B2TXL5|RUVC_SHIB3 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|254767471|sp|B7USP0|RUVC_ECO27 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|254767472|sp|B7L7R6|RUVC_ECO55 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|254767473|sp|B7MVZ4|RUVC_ECO81 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|259495686|sp|C4ZQE7|RUVC_ECOBW RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|12515919|gb|AAG56853.1|AE005408_11 Holliday junction nuclease; resolution of structures; repair
[Escherichia coli O157:H7 str. EDL933]
gi|42175|emb|CAA42128.1| ruvC [Escherichia coli K-12]
gi|216653|dbj|BAA01032.1| RuvC [Escherichia coli]
gi|1736510|dbj|BAA15674.1| component of RuvABC resolvasome, endonuclease [Escherichia coli
str. K12 substr. W3110]
gi|1788170|gb|AAC74933.1| component of RuvABC resolvasome, endonuclease [Escherichia coli
str. K-12 substr. MG1655]
gi|13362041|dbj|BAB35996.1| Holliday junction nuclease [Escherichia coli O157:H7 str. Sakai]
gi|81240597|gb|ABB61307.1| Holliday junction nuclease [Shigella dysenteriae Sd197]
gi|81245113|gb|ABB65821.1| Holliday junction nuclease [Shigella boydii Sb227]
gi|91072662|gb|ABE07543.1| RuvC protein, Holliday junction nuclease [Escherichia coli UTI89]
gi|110343573|gb|ABG69810.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
536]
gi|157067012|gb|ABV06267.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli HS]
gi|169754720|gb|ACA77419.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
ATCC 8739]
gi|169889354|gb|ACB03061.1| component of RuvABC resolvasome, endonuclease [Escherichia coli
str. K-12 substr. DH10B]
gi|170121668|gb|EDS90599.1| crossover junction endodeoxyribonuclease RuvC [Escherichia albertii
TW07627]
gi|170520090|gb|ACB18268.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
SMS-3-5]
gi|187430389|gb|ACD09663.1| crossover junction endodeoxyribonuclease RuvC [Shigella boydii CDC
3083-94]
gi|187768114|gb|EDU31958.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
O157:H7 str. EC4196]
gi|188017407|gb|EDU55529.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
O157:H7 str. EC4113]
gi|188491025|gb|EDU66128.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
53638]
gi|188999434|gb|EDU68420.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
O157:H7 str. EC4076]
gi|189355185|gb|EDU73604.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
O157:H7 str. EC4401]
gi|189360291|gb|EDU78710.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
O157:H7 str. EC4486]
gi|189367402|gb|EDU85818.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
O157:H7 str. EC4501]
gi|189376053|gb|EDU94469.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
O157:H7 str. EC508]
gi|190901861|gb|EDV61611.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
B7A]
gi|190906723|gb|EDV66328.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
F11]
gi|192926281|gb|EDV80918.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
E22]
gi|192956830|gb|EDV87284.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
E110019]
gi|194412302|gb|EDX28606.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
B171]
gi|194422001|gb|EDX38005.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
101-1]
gi|208725243|gb|EDZ74950.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
O157:H7 str. EC4206]
gi|208731062|gb|EDZ79751.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
O157:H7 str. EC4045]
gi|208740792|gb|EDZ88474.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
O157:H7 str. EC4042]
gi|209158811|gb|ACI36244.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
O157:H7 str. EC4115]
gi|209767448|gb|ACI82036.1| Holliday junction nuclease [Escherichia coli]
gi|209767450|gb|ACI82037.1| Holliday junction nuclease [Escherichia coli]
gi|209767452|gb|ACI82038.1| Holliday junction nuclease [Escherichia coli]
gi|209767456|gb|ACI82040.1| Holliday junction nuclease [Escherichia coli]
gi|209912489|dbj|BAG77563.1| holliday junction nuclease [Escherichia coli SE11]
gi|215265148|emb|CAS09536.1| RuvC component of RuvABC resolvasome, endonuclease [Escherichia
coli O127:H6 str. E2348/69]
gi|217318211|gb|EEC26638.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
O157:H7 str. TW14588]
gi|218352161|emb|CAU97900.1| component of RuvABC resolvasome, endonuclease [Escherichia coli
55989]
gi|218356117|emb|CAQ88734.1| component of RuvABC resolvasome, endonuclease [Escherichia
fergusonii ATCC 35469]
gi|218361219|emb|CAQ98803.1| component of RuvABC resolvasome, endonuclease [Escherichia coli
IAI1]
gi|218365497|emb|CAR03224.1| component of RuvABC resolvasome, endonuclease [Escherichia coli
S88]
gi|218369551|emb|CAR17320.1| component of RuvABC resolvasome, endonuclease [Escherichia coli
IAI39]
gi|218427365|emb|CAR08260.2| component of RuvABC resolvasome, endonuclease [Escherichia coli
ED1a]
gi|218432461|emb|CAR13354.1| component of RuvABC resolvasome, endonuclease [Escherichia coli
UMN026]
gi|222033612|emb|CAP76353.1| Crossover junction endodeoxyribonuclease ruvC [Escherichia coli
LF82]
gi|227837282|gb|EEJ47748.1| Holliday junction resolvase [Escherichia coli 83972]
gi|238860168|gb|ACR62166.1| component of RuvABC resolvasome, endonuclease [Escherichia coli
BW2952]
gi|242377584|emb|CAQ32339.1| Holliday junction nuclease; resolution of structures; repair,
subunit of resolvasome [Escherichia coli BL21(DE3)]
gi|253324224|gb|ACT28826.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253973824|gb|ACT39495.1| Holliday junction resolvase [Escherichia coli B str. REL606]
gi|253978018|gb|ACT43688.1| Holliday junction resolvase [Escherichia coli BL21(DE3)]
gi|254592887|gb|ACT72248.1| component of RuvABC resolvasome, endonuclease [Escherichia coli
O157:H7 str. TW14359]
gi|257754452|dbj|BAI25954.1| endonuclease RuvC [Escherichia coli O26:H11 str. 11368]
gi|257759353|dbj|BAI30850.1| endonuclease RuvC [Escherichia coli O103:H2 str. 12009]
gi|257764754|dbj|BAI36249.1| endonuclease RuvC [Escherichia coli O111:H- str. 11128]
gi|260449014|gb|ACX39436.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
DH1]
gi|281178933|dbj|BAI55263.1| holliday junction nuclease [Escherichia coli SE15]
gi|284921783|emb|CBG34856.1| crossover junction endodeoxyribonuclease [Escherichia coli 042]
gi|290762918|gb|ADD56879.1| Crossover junction endodeoxyribonuclease ruvC [Escherichia coli
O55:H7 str. CB9615]
gi|291323080|gb|EFE62508.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
B088]
gi|291427566|gb|EFF00593.1| crossover junction endodeoxyribonuclease ruvC [Escherichia coli
FVEC1412]
gi|291432826|gb|EFF05805.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
B185]
gi|291470643|gb|EFF13127.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
B354]
gi|294489901|gb|ADE88657.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
IHE3034]
gi|298278442|gb|EFI19956.1| crossover junction endodeoxyribonuclease ruvC [Escherichia coli
FVEC1302]
gi|299877739|gb|EFI85950.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
196-1]
gi|300297538|gb|EFJ53923.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
185-1]
gi|300307323|gb|EFJ61843.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
200-1]
gi|300316606|gb|EFJ66390.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
175-1]
gi|300357270|gb|EFJ73140.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
198-1]
gi|300399737|gb|EFJ83275.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
69-1]
gi|300406370|gb|EFJ89908.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
45-1]
gi|300415214|gb|EFJ98524.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
115-1]
gi|300418888|gb|EFK02199.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
182-1]
gi|300449235|gb|EFK12855.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
116-1]
gi|300458950|gb|EFK22443.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
21-1]
gi|300463122|gb|EFK26615.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
187-1]
gi|300523266|gb|EFK44335.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
119-7]
gi|300530935|gb|EFK51997.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
107-1]
gi|300845800|gb|EFK73560.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
78-1]
gi|301076153|gb|EFK90959.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
146-1]
gi|305852466|gb|EFM52917.1| Holliday junction resolvase [Escherichia coli NC101]
gi|306906194|gb|EFN36712.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli W]
gi|307553882|gb|ADN46657.1| holliday junction nuclease [Escherichia coli ABU 83972]
gi|307626654|gb|ADN70958.1| Holliday junction resolvase [Escherichia coli UM146]
gi|308122149|gb|EFO59411.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
145-7]
gi|309702087|emb|CBJ01401.1| crossover junction endodeoxyribonuclease [Escherichia coli ETEC
H10407]
gi|310338189|gb|EFQ03278.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
1827-70]
gi|312288530|gb|EFR16432.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
2362-75]
gi|312946463|gb|ADR27290.1| Holliday junction resolvase [Escherichia coli O83:H1 str. NRG 857C]
gi|315061169|gb|ADT75496.1| component of RuvABC resolvasome, endonuclease [Escherichia coli W]
gi|315136506|dbj|BAJ43665.1| crossover junction endodeoxyribonuclease ruvC [Escherichia coli
DH1]
gi|315286568|gb|EFU46003.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
110-3]
gi|315290342|gb|EFU49718.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
153-1]
gi|315296554|gb|EFU55851.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
16-3]
gi|320186108|gb|EFW60852.1| Crossover junction endodeoxyribonuclease RuvC [Shigella flexneri
CDC 796-83]
gi|320188564|gb|EFW63226.1| Crossover junction endodeoxyribonuclease RuvC [Escherichia coli
O157:H7 str. EC1212]
gi|320194421|gb|EFW69052.1| Crossover junction endodeoxyribonuclease RuvC [Escherichia coli
WV_060327]
gi|320198057|gb|EFW72665.1| Crossover junction endodeoxyribonuclease RuvC [Escherichia coli
EC4100B]
gi|320641717|gb|EFX11105.1| Holliday junction resolvase [Escherichia coli O157:H7 str. G5101]
gi|320647077|gb|EFX15910.1| Holliday junction resolvase [Escherichia coli O157:H- str. 493-89]
gi|320652360|gb|EFX20658.1| Holliday junction resolvase [Escherichia coli O157:H- str. H 2687]
gi|320657961|gb|EFX25723.1| Holliday junction resolvase [Escherichia coli O55:H7 str. 3256-97
TW 07815]
gi|320658534|gb|EFX26228.1| Holliday junction resolvase [Escherichia coli O55:H7 str. USDA
5905]
gi|320668432|gb|EFX35259.1| Holliday junction resolvase [Escherichia coli O157:H7 str. LSU-61]
gi|323152648|gb|EFZ38924.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
EPECa14]
gi|323158652|gb|EFZ44666.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
E128010]
gi|323174756|gb|EFZ60372.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
LT-68]
gi|323186361|gb|EFZ71711.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
1357]
gi|323186871|gb|EFZ72190.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
RN587/1]
gi|323378254|gb|ADX50522.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
KO11]
gi|323937121|gb|EGB33401.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
E1520]
gi|323940469|gb|EGB36660.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
E482]
gi|323948251|gb|EGB44239.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
H120]
gi|323952365|gb|EGB48238.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
H252]
gi|323956494|gb|EGB52236.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
H263]
gi|323961918|gb|EGB57517.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
H489]
gi|323968285|gb|EGB63692.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
M863]
gi|323972629|gb|EGB67832.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
TA007]
gi|323977952|gb|EGB73038.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
TW10509]
gi|324007230|gb|EGB76449.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
57-2]
gi|324012868|gb|EGB82087.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
60-1]
gi|324018006|gb|EGB87225.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
117-3]
gi|324113599|gb|EGC07574.1| crossover junction endodeoxyribonuclease RuvC [Escherichia
fergusonii B253]
gi|324118923|gb|EGC12812.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
E1167]
gi|326342243|gb|EGD66024.1| Crossover junction endodeoxyribonuclease RuvC [Escherichia coli
O157:H7 str. 1044]
gi|326343793|gb|EGD67555.1| Crossover junction endodeoxyribonuclease RuvC [Escherichia coli
O157:H7 str. 1125]
gi|327252992|gb|EGE64646.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
STEC_7v]
gi|330911673|gb|EGH40183.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
AA86]
gi|331056160|gb|EGI28169.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
TA206]
gi|331059158|gb|EGI31135.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
TA143]
gi|331063752|gb|EGI35663.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
TA271]
gi|331079584|gb|EGI50781.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
H299]
gi|332096544|gb|EGJ01538.1| crossover junction endodeoxyribonuclease RuvC [Shigella boydii
3594-74]
gi|332343589|gb|AEE56923.1| holliday junction endodeoxyribonuclease RuvC [Escherichia coli
UMNK88]
Length = 173
Score = 148 bits (373), Expect = 3e-34, Method: Composition-based stats.
Identities = 52/136 (38%), Positives = 83/136 (61%), Gaps = 1/136 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G L ++ SG I + L RL +Y G+T++I ++P
Sbjct: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRT-KVDDLPSRLKLIYAGVTEIITQFQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQVF+ K+A + LKLGQAR +AI++ +PV EYA +K+ V+G+G +K Q
Sbjct: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121
Query: 126 IHMMLKMLMPESFFKG 141
+ M++ L+
Sbjct: 122 VQHMVRTLLKLPANPQ 137
>gi|254559649|ref|YP_003066744.1| RuvC; Holliday junction nuclease [Methylobacterium extorquens DM4]
gi|254266927|emb|CAX22726.1| RuvC; Holliday junction nuclease [Methylobacterium extorquens DM4]
Length = 202
Score = 148 bits (373), Expect = 3e-34, Method: Composition-based stats.
Identities = 74/140 (52%), Positives = 100/140 (71%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M +RI+GIDPGLRRTGWG++ G L +++ G + S LA RL +L+EGLT ++
Sbjct: 14 MTTDVRILGIDPGLRRTGWGLITARGSKLSYLACGVVTSDGDLPLALRLRELHEGLTRIV 73
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
+ P+E +VE+ FVNKDA ATLKLG ARA+A+L PALA +PV+EYA N +KK V G GH
Sbjct: 74 TTYTPDEVSVEETFVNKDAQATLKLGHARAVALLVPALAGLPVAEYAANLVKKTVAGNGH 133
Query: 121 GDKKQIHMMLKMLMPESFFK 140
+K QI M+K L+P++ FK
Sbjct: 134 AEKVQIQAMVKFLLPKAEFK 153
>gi|328950609|ref|YP_004367944.1| Crossover junction endodeoxyribonuclease ruvC [Marinithermus
hydrothermalis DSM 14884]
gi|328450933|gb|AEB11834.1| Crossover junction endodeoxyribonuclease ruvC [Marinithermus
hydrothermalis DSM 14884]
Length = 163
Score = 148 bits (373), Expect = 3e-34, Method: Composition-based stats.
Identities = 44/160 (27%), Positives = 81/160 (50%), Gaps = 1/160 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ ++G+DPG+ G G+V+ G F+ + + + R+ ++Y + V++ +R
Sbjct: 1 MIVLGVDPGITNMGLGVVEGDGPKARFLHGELVRTRHGEPAPKRVGRIYRAVRGVLEAYR 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
PE AVE + + ++G A +++ A +PV Y P +K+A++G G DK
Sbjct: 61 PEAVAVEGQYFYRQNELAYRVGWAMGAVLVAADEAGLPVFAYGPMQVKQALVGTGRADKA 120
Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHANSGYY 163
Q+ M++ ++ K ADALAIA+ H H +G
Sbjct: 121 QVAYMVRAILNLREAPKVSHVADALAIALTHLAHLRTGAT 160
>gi|262372759|ref|ZP_06066038.1| crossover junction endodeoxyribonuclease RuvC [Acinetobacter junii
SH205]
gi|262312784|gb|EEY93869.1| crossover junction endodeoxyribonuclease RuvC [Acinetobacter junii
SH205]
Length = 181
Score = 148 bits (373), Expect = 3e-34, Method: Composition-based stats.
Identities = 69/160 (43%), Positives = 102/160 (63%), Gaps = 2/160 (1%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
IIGIDPG R TG+GI++ G+ L FV +GTI + Q + RL +++ G+ ++K P
Sbjct: 4 IIGIDPGSRLTGYGIIEKDGNKLRFVDAGTIRTET-QEMPERLKRIFAGIERIVKFHGPT 62
Query: 67 EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
EAAVEQVF+ ++ + LKLGQAR AI + + V+EY IK++V+G G +K+Q+
Sbjct: 63 EAAVEQVFMAQNPDSALKLGQARGAAIAALVNLDLQVAEYTARQIKQSVVGYGAAEKEQV 122
Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
MM+ L+ + DAADALA A+CHA+ + S K+A
Sbjct: 123 QMMVMKLLNLTIQPQADAADALAAAICHAHASGS-MSKMA 161
>gi|320174358|gb|EFW49507.1| Crossover junction endodeoxyribonuclease RuvC [Shigella dysenteriae
CDC 74-1112]
Length = 173
Score = 148 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 52/136 (38%), Positives = 83/136 (61%), Gaps = 1/136 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G L ++ SG I + L RL +Y G+T++I ++P
Sbjct: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRT-KVDDLPSRLKLIYAGVTEIITQFQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQVF+ K+A + LKLGQAR +AI++ +PV EYA +K+ V+G+G +K Q
Sbjct: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121
Query: 126 IHMMLKMLMPESFFKG 141
+ M++ L+
Sbjct: 122 VQHMVRTLLKLPANPQ 137
>gi|309790184|ref|ZP_07684756.1| crossover junction endodeoxyribonuclease RuvC [Oscillochloris
trichoides DG6]
gi|308227769|gb|EFO81425.1| crossover junction endodeoxyribonuclease RuvC [Oscillochloris
trichoides DG6]
Length = 158
Score = 148 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 46/138 (33%), Positives = 78/138 (56%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+R IGIDPG R GWG+V+ G ++ V G + + A RL LY GL +++ ++
Sbjct: 1 MRTIGIDPGTARMGWGVVEKQGSDVRLVEFGVLTTPAGMPQAERLHHLYTGLVQILQRYQ 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ AVE++F K+ + +GQAR + +L+ A + + EY P +K+A+ G G DK+
Sbjct: 61 PQAGAVEELFFGKNVNTAITVGQARGVVLLALHQAGLSIHEYKPLVVKQALTGYGGADKR 120
Query: 125 QIHMMLKMLMPESFFKGK 142
Q+ M+++ + S
Sbjct: 121 QMQEMVRITLGLSSIPRP 138
>gi|332882727|ref|ZP_08450338.1| crossover junction endodeoxyribonuclease RuvC [Capnocytophaga sp.
oral taxon 329 str. F0087]
gi|332679229|gb|EGJ52215.1| crossover junction endodeoxyribonuclease RuvC [Capnocytophaga sp.
oral taxon 329 str. F0087]
Length = 167
Score = 148 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 42/144 (29%), Positives = 74/144 (51%), Gaps = 1/144 (0%)
Query: 17 TGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVN 76
G+GI+ V + + + + +L ++ ++I + P+E A+E F
Sbjct: 1 MGFGIIRVENQQMKLLQLNELQLSKYNNHYIKLGVIFNRTLELIDTYHPDELAIEAPFFG 60
Query: 77 KDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPE 136
K+ + LKLG+A+ +A+ + IP++EY P +K A+ G G K+Q+ ML+ L+
Sbjct: 61 KNVQSMLKLGRAQGVAMAAGLSREIPITEYEPKKVKMAITGNGAASKEQVAKMLQQLLGL 120
Query: 137 SF-FKGKDAADALAIAVCHAYHAN 159
K DA D LA+AVCH ++
Sbjct: 121 KELPKHFDATDGLAVAVCHYFNTG 144
>gi|259908218|ref|YP_002648574.1| Holliday junction resolvase [Erwinia pyrifoliae Ep1/96]
gi|224963840|emb|CAX55342.1| Crossover junction endodeoxyribonuclease [Erwinia pyrifoliae
Ep1/96]
gi|283478148|emb|CAY74064.1| Holliday junction nuclease [Erwinia pyrifoliae DSM 12163]
gi|310767867|gb|ADP12817.1| Holliday junction resolvase [Erwinia sp. Ejp617]
Length = 173
Score = 148 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 54/136 (39%), Positives = 83/136 (61%), Gaps = 1/136 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G L ++ SG I + V L RL +Y G++++I +RP
Sbjct: 3 IILGIDPGSRVTGYGVIRQTGRQLSYLGSGCIRTSV-TDLPSRLKLIYAGVSEIITQFRP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
E A+EQVF+ K+A + LKLGQAR AI++ +PV EYA +K+ V+G+G +K Q
Sbjct: 62 EYFAIEQVFMAKNADSALKLGQARGAAIVAAVNQDLPVFEYAARQVKQTVVGIGSAEKSQ 121
Query: 126 IHMMLKMLMPESFFKG 141
+ M++ L+
Sbjct: 122 VQHMVRTLLKLPANPQ 137
>gi|157826643|ref|YP_001495707.1| Holliday junction resolvase [Rickettsia bellii OSU 85-389]
gi|166233293|sp|A8GUZ9|RUVC_RICB8 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|157801947|gb|ABV78670.1| Holliday junction resolvase [Rickettsia bellii OSU 85-389]
Length = 157
Score = 148 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 55/150 (36%), Positives = 83/150 (55%), Gaps = 1/150 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ ++GIDP L GW +V L +++SG I + + + RL + L VI ++
Sbjct: 1 MIVLGIDPALGSLGWAVVAKESAKLKYLASGVIKTSSKDEIHHRLSYINSILEKVILEYK 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P A +E+ FVN ++V +LKLG AR + + + E+ PNTIKK V G GH +K
Sbjct: 61 PNMATIEETFVNTNSVTSLKLGYARGAIMSLIGRYDLDMREFKPNTIKKTVTGYGHAEKD 120
Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVC 153
QI M+K+L+P + D ADA+AIA
Sbjct: 121 QILHMIKLLLPGTAAITNSDEADAVAIAYT 150
>gi|183598999|ref|ZP_02960492.1| hypothetical protein PROSTU_02443 [Providencia stuartii ATCC 25827]
gi|188021214|gb|EDU59254.1| hypothetical protein PROSTU_02443 [Providencia stuartii ATCC 25827]
Length = 173
Score = 147 bits (372), Expect = 4e-34, Method: Composition-based stats.
Identities = 54/136 (39%), Positives = 85/136 (62%), Gaps = 1/136 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G L ++ SG I + V L RL ++Y G++++I ++P
Sbjct: 3 IILGIDPGSRVTGYGVIRQQGRQLFYLGSGCIRTQV-DDLPSRLQRIYAGVSEIITQYQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQVF+ K+A + LKLGQAR +AI++ IPV EYA +K+ V+G G +K Q
Sbjct: 62 DVLAIEQVFMAKNADSALKLGQARGVAIVAGVNQNIPVFEYAARQVKQTVVGTGAAEKSQ 121
Query: 126 IHMMLKMLMPESFFKG 141
+ M+K ++ S
Sbjct: 122 VQHMVKSILKLSANPQ 137
>gi|78357367|ref|YP_388816.1| Holliday junction resolvase [Desulfovibrio desulfuricans subsp.
desulfuricans str. G20]
gi|90146452|sp|Q30YX5|RUVC_DESDG RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|78219772|gb|ABB39121.1| Holliday junction endonuclease RuvC [Desulfovibrio desulfuricans
subsp. desulfuricans str. G20]
Length = 166
Score = 147 bits (372), Expect = 4e-34, Method: Composition-based stats.
Identities = 65/161 (40%), Positives = 90/161 (55%), Gaps = 3/161 (1%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
++GIDPG R TGWGIV L V G + + RL +Y GL +VI P+
Sbjct: 8 VLGIDPGSRTTGWGIVREVSGVLTLVDCGAVR-PRGDEFSDRLGAIYHGLHEVIARHMPD 66
Query: 67 EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
EA+VE VF K+A + LKLGQAR A+ + A +PV+ YAP IKK ++GVG +K+Q+
Sbjct: 67 EASVENVFTAKNAASALKLGQARGAAVAACAAHHLPVASYAPTEIKKTIVGVGRAEKEQV 126
Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
M+ L+ G D DALA A+CH ++A+
Sbjct: 127 SFMVARLLGVKGDWGPDTGDALAAAICHLNMRR--LRRLAA 165
>gi|283785601|ref|YP_003365466.1| crossover junction endodeoxyribonuclease [Citrobacter rodentium
ICC168]
gi|282949055|emb|CBG88658.1| crossover junction endodeoxyribonuclease [Citrobacter rodentium
ICC168]
Length = 174
Score = 147 bits (372), Expect = 4e-34, Method: Composition-based stats.
Identities = 52/136 (38%), Positives = 83/136 (61%), Gaps = 1/136 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G L ++ SG I + L RL +Y G+T++I ++P
Sbjct: 4 IILGIDPGSRVTGYGVIRQVGRQLTYLGSGCIRT-KVDDLPSRLKLIYAGVTEIITQFQP 62
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQVF+ K+A + LKLGQAR +AI++ +PV EYA +K+ V+G+G +K Q
Sbjct: 63 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQSLPVFEYAARQVKQTVVGIGSAEKSQ 122
Query: 126 IHMMLKMLMPESFFKG 141
+ M++ L+
Sbjct: 123 VQHMVRTLLKLPANPQ 138
>gi|29839887|ref|NP_828993.1| Holliday junction resolvase [Chlamydophila caviae GPIC]
gi|33301630|sp|Q824M6|RUVC_CHLCV RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|29834234|gb|AAP04871.1| crossover junction endodeoxyribonuclease RuvC [Chlamydophila caviae
GPIC]
Length = 168
Score = 147 bits (372), Expect = 4e-34, Method: Composition-based stats.
Identities = 57/156 (36%), Positives = 92/156 (58%), Gaps = 4/156 (2%)
Query: 7 IIGIDPGLRRTGWGIVDVAGD-NLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG +G+ I+ + + S G I + SL R QL++ L+ V+ + P
Sbjct: 5 IMGIDPGTLVSGYAIIHIEQRYKIRAHSYGAIRLSSKDSLTQRYKQLFQTLSGVLDDITP 64
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ +E +V+K+ +T+KLG AR + IL+ AL IPV EYAPN K+AV+G G+ K+Q
Sbjct: 65 DAVVLETQYVHKNPQSTIKLGMARGVLILAAALRDIPVFEYAPNVAKRAVVGKGNASKQQ 124
Query: 126 IHMMLKMLMPESFFKG---KDAADALAIAVCHAYHA 158
+ +M+ ++ +D ADA A+A+CHA+ +
Sbjct: 125 VQLMVSKILNIPDVLNSNCEDIADAFALAICHAHTS 160
>gi|270157093|ref|ZP_06185750.1| crossover junction endodeoxyribonuclease RuvC [Legionella
longbeachae D-4968]
gi|289164496|ref|YP_003454634.1| Crossover junction endodeoxyribonuclease ruvC [Legionella
longbeachae NSW150]
gi|269989118|gb|EEZ95372.1| crossover junction endodeoxyribonuclease RuvC [Legionella
longbeachae D-4968]
gi|288857669|emb|CBJ11512.1| Crossover junction endodeoxyribonuclease ruvC [Legionella
longbeachae NSW150]
Length = 172
Score = 147 bits (372), Expect = 4e-34, Method: Composition-based stats.
Identities = 48/136 (35%), Positives = 84/136 (61%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ + + ++ SG I + L+ +L Q+Y+G+ ++ + P
Sbjct: 3 IILGIDPGSRITGYGLIKESDRKIEYIDSGCIRTTPDGELSQKLLQIYDGICQLMDQYSP 62
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
EE A+EQVF++++ + LKLG AR +A+++ A R+ VSEY+ IK+ V+G G +K Q
Sbjct: 63 EEVAIEQVFMHENPNSALKLGHARGVAMVAAASHRVKVSEYSAREIKQTVVGYGAAEKNQ 122
Query: 126 IHMMLKMLMPESFFKG 141
+ M+ L+ +
Sbjct: 123 VSHMVVSLLALNKAPQ 138
>gi|270262224|ref|ZP_06190496.1| crossover junction endodeoxyribonuclease ruvC [Serratia odorifera
4Rx13]
gi|270044100|gb|EFA17192.1| crossover junction endodeoxyribonuclease ruvC [Serratia odorifera
4Rx13]
Length = 173
Score = 147 bits (372), Expect = 4e-34, Method: Composition-based stats.
Identities = 50/136 (36%), Positives = 83/136 (61%), Gaps = 1/136 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G L +++SG I + V + RL +Y G++++I ++P
Sbjct: 3 IILGIDPGSRVTGYGLIRQQGRQLSYIASGCIRTVV-DDMPTRLKLIYAGVSEIITQFKP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQVF+ K+ + LKLGQAR +AI++ + V EYA +K+ V+G G +K Q
Sbjct: 62 DFFAIEQVFMAKNPDSALKLGQARGVAIVAAVNQDLEVFEYAARQVKQTVVGTGAAEKAQ 121
Query: 126 IHMMLKMLMPESFFKG 141
+ M++ L+ S
Sbjct: 122 VQHMVRSLLKLSANPQ 137
>gi|97274471|sp|Q6FAQ2|RUVC_ACIAD RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
Length = 181
Score = 147 bits (372), Expect = 4e-34, Method: Composition-based stats.
Identities = 67/160 (41%), Positives = 102/160 (63%), Gaps = 2/160 (1%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
IIGIDPG R TG+GI++ G+ L F+ +GTI + Q + RL +++ G+ ++K P
Sbjct: 4 IIGIDPGSRLTGYGIIEKNGNELRFIDAGTIRTES-QDMPERLKRIFAGVERIVKFHGPT 62
Query: 67 EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
+AAVEQVF+ ++ + LKLGQAR AI + + V+EY IK++V+G G DK+Q+
Sbjct: 63 QAAVEQVFMAQNPDSALKLGQARGAAIAALVNLDLEVAEYTARQIKQSVVGYGAADKEQV 122
Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
MM+ ++ + DAADALA A+CHA+ + S K+A
Sbjct: 123 QMMVMRILNLTIKPQSDAADALAAAICHAHASGS-MSKMA 161
>gi|86139157|ref|ZP_01057727.1| Holliday junction resolvase [Roseobacter sp. MED193]
gi|85824001|gb|EAQ44206.1| Holliday junction resolvase [Roseobacter sp. MED193]
Length = 165
Score = 147 bits (372), Expect = 4e-34, Method: Composition-based stats.
Identities = 81/161 (50%), Positives = 111/161 (68%), Gaps = 1/161 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPGLR GWG+++ G L V++G + L RL L+ +T+VI+ +
Sbjct: 1 MRILGIDPGLRNLGWGVIESQGSRLSHVANGVC-TSDGDDLGERLLSLHNQVTEVIEAYA 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P +AA+EQ FVNKD VATLKLGQAR +A+L+ A A +P EYAPN +KK V+GVGH K+
Sbjct: 60 PTQAAIEQTFVNKDGVATLKLGQARGVALLTLAKAGLPTGEYAPNRVKKTVVGVGHASKE 119
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
QI M+K+ +P KG DAADALAIA+CHAY+ + ++
Sbjct: 120 QIIHMVKLQLPGCAPKGADAADALAIAICHAYYGGTQQRQL 160
>gi|304396236|ref|ZP_07378118.1| crossover junction endodeoxyribonuclease RuvC [Pantoea sp. aB]
gi|304356605|gb|EFM20970.1| crossover junction endodeoxyribonuclease RuvC [Pantoea sp. aB]
Length = 175
Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats.
Identities = 51/136 (37%), Positives = 80/136 (58%), Gaps = 1/136 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G L ++ SG I + L RL +Y G+ ++I + P
Sbjct: 3 IILGIDPGSRITGYGVIRQTGRQLTYLGSGCIRTNT-TELPARLKLIYAGVCEIITQFSP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQVF+ K+A + LKLGQAR AI++ +PV EYA +K+ V+G+G +K Q
Sbjct: 62 DFFAIEQVFMAKNADSALKLGQARGAAIVAAVNHDLPVFEYAARQVKQTVVGIGSAEKSQ 121
Query: 126 IHMMLKMLMPESFFKG 141
+ M++ L+
Sbjct: 122 VQHMVRTLLKLPANPQ 137
>gi|297621996|ref|YP_003710133.1| Holliday junction endonuclease RuvC [Waddlia chondrophila WSU
86-1044]
gi|297377297|gb|ADI39127.1| Holliday junction endonuclease RuvC [Waddlia chondrophila WSU
86-1044]
Length = 159
Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats.
Identities = 40/138 (28%), Positives = 69/138 (50%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ I+GIDPG G+GIV+ G + G I V+ +L R +Y+ + +++
Sbjct: 1 MIILGIDPGTVVCGFGIVEFDGVRFRVIDFGCIRPPVKYALPDRYLVIYDSVYALLEEHD 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P VE +V + + +K+G AR +++ A +P+ EYAP+ K AV+G G K
Sbjct: 61 PHALVVETQYVKHNPQSAMKIGMARGAVMIAGAKKGVPIYEYAPSKAKLAVVGNGRASKH 120
Query: 125 QIHMMLKMLMPESFFKGK 142
Q+ M++ L+
Sbjct: 121 QVQSMVQHLLHLPEPPSP 138
>gi|152970924|ref|YP_001336033.1| Holliday junction resolvase [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|262041979|ref|ZP_06015161.1| crossover junction endodeoxyribonuclease RuvC [Klebsiella
pneumoniae subsp. rhinoscleromatis ATCC 13884]
gi|330001141|ref|ZP_08303908.1| crossover junction endodeoxyribonuclease RuvC [Klebsiella sp. MS
92-3]
gi|166233200|sp|A6TB32|RUVC_KLEP7 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|150955773|gb|ABR77803.1| Holliday junction resolvase [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|259040677|gb|EEW41766.1| crossover junction endodeoxyribonuclease RuvC [Klebsiella
pneumoniae subsp. rhinoscleromatis ATCC 13884]
gi|328537787|gb|EGF63986.1| crossover junction endodeoxyribonuclease RuvC [Klebsiella sp. MS
92-3]
Length = 173
Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats.
Identities = 52/136 (38%), Positives = 83/136 (61%), Gaps = 1/136 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G L ++ SG I + L RL +Y G+T++I ++P
Sbjct: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRT-KVDDLPSRLKLIYAGVTEIITQFQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQVF+ K+A + LKLGQAR +AI++ +PV EYA +K+ V+G+G +K Q
Sbjct: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAATNQALPVFEYAARQVKQTVVGIGSAEKSQ 121
Query: 126 IHMMLKMLMPESFFKG 141
+ M++ L+
Sbjct: 122 VQHMVRTLLKLPANPQ 137
>gi|194433925|ref|ZP_03066197.1| crossover junction endodeoxyribonuclease RuvC [Shigella dysenteriae
1012]
gi|194417797|gb|EDX33894.1| crossover junction endodeoxyribonuclease RuvC [Shigella dysenteriae
1012]
Length = 174
Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats.
Identities = 53/136 (38%), Positives = 84/136 (61%), Gaps = 1/136 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G L ++ SG I + L FRL +Y G+T++I ++P
Sbjct: 4 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRT-KVDDLPFRLKLIYAGVTEIITQFQP 62
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQVF+ K+A + LKLGQAR +AI++ +PV EYA +K+ V+G+G +K Q
Sbjct: 63 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 122
Query: 126 IHMMLKMLMPESFFKG 141
+ M++ L+
Sbjct: 123 VQHMVRTLLKLPANPQ 138
>gi|32266610|ref|NP_860642.1| Holliday junction resolvase [Helicobacter hepaticus ATCC 51449]
gi|44888423|sp|Q7VH56|RUVC_HELHP RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|32262661|gb|AAP77708.1| holliday junction resolvase RuvC [Helicobacter hepaticus ATCC
51449]
Length = 185
Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats.
Identities = 51/160 (31%), Positives = 81/160 (50%), Gaps = 4/160 (2%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAG--DNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
+ I+GIDPG R G+ I++ A ++L + +G I + L ++ + EG+ VIKN
Sbjct: 1 MHILGIDPGSRNCGYAIINYAPHVNSLKLIEAGIIK-IKERDLQTQIMEFVEGIDLVIKN 59
Query: 63 WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
+E A+E +F + + +KL Q R L SEY P +KKA+ G G D
Sbjct: 60 IHIDEVAIEDIFFAYNPQSVIKLAQFRGALSLKILQEIGNFSEYTPLQVKKAITGNGKAD 119
Query: 123 KKQIHMMLKMLMPES-FFKGKDAADALAIAVCHAYHANSG 161
K Q+ M+K ++ K D DA+AIA+ H+ +
Sbjct: 120 KTQVAFMVKRILGLKGEIKPLDITDAIAIAITHSQRIKTN 159
>gi|308049718|ref|YP_003913284.1| crossover junction endodeoxyribonuclease RuvC [Ferrimonas balearica
DSM 9799]
gi|307631908|gb|ADN76210.1| crossover junction endodeoxyribonuclease RuvC [Ferrimonas balearica
DSM 9799]
Length = 173
Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats.
Identities = 51/135 (37%), Positives = 83/135 (61%), Gaps = 1/135 (0%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
I+GIDPG R TG+G++ G ++ SG I L RL +++G+++++K + P+
Sbjct: 4 ILGIDPGSRLTGYGVIRFCGRQFQYLGSGCIRLP-ETDLPSRLKIIFDGVSELVKQFEPD 62
Query: 67 EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
E AVE+VF+ ++A + LKLGQAR AI++ + VSEY+P +K+AV+G G K+Q+
Sbjct: 63 ELAVERVFMGRNADSALKLGQARGAAIVAALNGGLTVSEYSPTQVKQAVVGTGGAKKEQV 122
Query: 127 HMMLKMLMPESFFKG 141
M+K L+
Sbjct: 123 QHMVKHLLKLPGTPQ 137
>gi|303233816|ref|ZP_07320470.1| crossover junction endodeoxyribonuclease RuvC [Finegoldia magna
BVS033A4]
gi|302495250|gb|EFL55002.1| crossover junction endodeoxyribonuclease RuvC [Finegoldia magna
BVS033A4]
Length = 164
Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats.
Identities = 42/138 (30%), Positives = 77/138 (55%), Gaps = 1/138 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+R++GIDPG+ G+ I+D + + + G I + + +L RL +Y+ + +I ++
Sbjct: 1 MRVLGIDPGIAIVGYSILDYDNNKINCLEYGCITTSSKSALPDRLSFIYQEMNKIIDEFQ 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P++ A E++F NK+ + + QAR + ILS + + EY P IK+AV+G G DK+
Sbjct: 61 PDDCAFEELFFNKNVKTAITVSQARGVEILSCINKDLRLYEYTPLQIKQAVVGYGRADKR 120
Query: 125 QIHMMLKMLMP-ESFFKG 141
Q+ +K ++ K
Sbjct: 121 QVQETVKTILKFNEIPKP 138
>gi|254476073|ref|ZP_05089459.1| crossover junction endodeoxyribonuclease RuvC [Ruegeria sp. R11]
gi|214030316|gb|EEB71151.1| crossover junction endodeoxyribonuclease RuvC [Ruegeria sp. R11]
Length = 165
Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats.
Identities = 77/161 (47%), Positives = 110/161 (68%), Gaps = 1/161 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPGLR GWG+++ G L V++G + L RL L+ + +VI+ +R
Sbjct: 1 MRILGIDPGLRNLGWGVIESRGTRLSHVANGVC-TSDGDDLGERLLSLHNQVIEVIEAYR 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P++AA+EQ FVNKD TLKLGQAR +A+++ A A +PV EYAPN +KK V+GVGH K+
Sbjct: 60 PDQAAIEQTFVNKDGAGTLKLGQARGVALMTLAQAGLPVGEYAPNRVKKTVVGVGHAAKE 119
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
QI M+K+ +P K DAADALAIA+CHA++ + ++
Sbjct: 120 QILHMVKLQLPGCLPKNADAADALAIAICHAFYGGTQARQL 160
>gi|32490863|ref|NP_871117.1| hypothetical protein WGLp114 [Wigglesworthia glossinidia
endosymbiont of Glossina brevipalpis]
gi|30173258|sp|Q8D387|RUVC_WIGBR RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|25166069|dbj|BAC24260.1| ruvC [Wigglesworthia glossinidia endosymbiont of Glossina
brevipalpis]
Length = 161
Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats.
Identities = 54/155 (34%), Positives = 84/155 (54%), Gaps = 1/155 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
IIGIDPG TG+GI+ + L + SG+I + RL +Y + ++I ++P
Sbjct: 3 IIIGIDPGSYVTGYGIIKSEKNTLKHIKSGSIFL-KKHDFKKRLKIIYICIKNIINKFKP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ +EQ+F +K+ + LKLGQA A L+ I + EYA IKK ++G G K Q
Sbjct: 62 KYFVIEQIFFSKNPSSVLKLGQASCAATLAAINLDILIFEYASKKIKKILVGDGKAKKLQ 121
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
+ + ++ S G D +DALA+A+ H Y N+
Sbjct: 122 VKNKVCSILNLSKSIGIDTSDALAVAITHHYLINN 156
>gi|262375407|ref|ZP_06068640.1| crossover junction endodeoxyribonuclease RuvC [Acinetobacter
lwoffii SH145]
gi|262309661|gb|EEY90791.1| crossover junction endodeoxyribonuclease RuvC [Acinetobacter
lwoffii SH145]
Length = 181
Score = 147 bits (371), Expect = 5e-34, Method: Composition-based stats.
Identities = 68/160 (42%), Positives = 102/160 (63%), Gaps = 2/160 (1%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
IIGIDPG R TG+GI++ G L FV +GTI + + RL +++ G+ ++K + P
Sbjct: 4 IIGIDPGSRLTGYGIIEKDGSKLTFVDAGTIRTET-TEMPERLKRIFAGVERIVKFYGPT 62
Query: 67 EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
EAAVEQVF+ ++ + LKLGQAR A+ + + V+EY IK++V+G G DK+Q+
Sbjct: 63 EAAVEQVFMAQNPDSALKLGQARGAAVAALVNLDLKVAEYTARQIKQSVVGYGAADKEQV 122
Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
MM+ ++ S +DAADALA A+CHA+ + S K+A
Sbjct: 123 QMMVMNILKLSIKPQQDAADALAAAICHAHASGS-MSKMA 161
>gi|113460654|ref|YP_718720.1| Holliday junction resolvase [Haemophilus somnus 129PT]
gi|123327176|sp|Q0I243|RUVC_HAES1 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|112822697|gb|ABI24786.1| Holliday junction endonuclease RuvC [Haemophilus somnus 129PT]
Length = 189
Score = 147 bits (371), Expect = 5e-34, Method: Composition-based stats.
Identities = 56/136 (41%), Positives = 83/136 (61%), Gaps = 1/136 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G+V G L ++ SG I + + L RL ++Y G+T++I + P
Sbjct: 3 IILGIDPGSRVTGYGVVRQVGHKLEYLGSGVIRTSI-DDLPTRLKRIYAGITEIITQFNP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
E A+EQVF+ K+ + LKLGQAR AI++ +PV EY+P TIK+ V+G G +K Q
Sbjct: 62 NEFAIEQVFMAKNPDSALKLGQARGTAIVAAVNQNLPVFEYSPRTIKQTVVGTGAAEKSQ 121
Query: 126 IHMMLKMLMPESFFKG 141
+ M+ L+ S
Sbjct: 122 VQEMVVRLLQLSDKPQ 137
>gi|226329882|ref|ZP_03805400.1| hypothetical protein PROPEN_03795 [Proteus penneri ATCC 35198]
gi|225200677|gb|EEG83031.1| hypothetical protein PROPEN_03795 [Proteus penneri ATCC 35198]
Length = 173
Score = 147 bits (371), Expect = 5e-34, Method: Composition-based stats.
Identities = 54/136 (39%), Positives = 84/136 (61%), Gaps = 1/136 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G L ++ SG I + V L RL ++Y G++++I + P
Sbjct: 3 IILGIDPGSRVTGYGVIRQQGRQLIYLGSGCIRTQVP-DLPNRLKRIYAGVSEIITQFSP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ AVEQVF+ K+A + LKLGQAR +AIL+ +PV EYA +K+ V+G G +K Q
Sbjct: 62 DVFAVEQVFMAKNADSALKLGQARGVAILAAVNNDLPVFEYAARQVKQTVVGTGAAEKSQ 121
Query: 126 IHMMLKMLMPESFFKG 141
+ M++ ++ S
Sbjct: 122 VQHMVRSILKLSAAPQ 137
>gi|86751375|ref|YP_487871.1| Holliday junction resolvase [Rhodopseudomonas palustris HaA2]
gi|86574403|gb|ABD08960.1| Holliday junction endonuclease RuvC [Rhodopseudomonas palustris
HaA2]
Length = 198
Score = 147 bits (371), Expect = 5e-34, Method: Composition-based stats.
Identities = 88/158 (55%), Positives = 117/158 (74%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
+R ++RI+GIDPGLRRTGWG+V+ G+ L FV+ G++ +LA RL ++ GL V+
Sbjct: 30 IRTAVRILGIDPGLRRTGWGVVESDGNRLVFVACGSVEPKDTLTLAERLLAIHHGLEKVL 89
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
+ P EAAVEQ FVNKD ATLKLGQAR +A+L+PA+ I V+EYAPN +KK V+G GH
Sbjct: 90 AEFAPAEAAVEQTFVNKDGAATLKLGQARGVAMLAPAMHGILVAEYAPNQVKKTVVGAGH 149
Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHA 158
DK QI MMLK+L+P++ + DAADALAIA+ HA+H
Sbjct: 150 ADKVQIQMMLKILLPKADPRTADAADALAIAITHAHHR 187
>gi|317488564|ref|ZP_07947109.1| crossover junction endodeoxyribonuclease RuvC [Eggerthella sp.
1_3_56FAA]
gi|316912306|gb|EFV33870.1| crossover junction endodeoxyribonuclease RuvC [Eggerthella sp.
1_3_56FAA]
Length = 192
Score = 147 bits (371), Expect = 5e-34, Method: Composition-based stats.
Identities = 48/144 (33%), Positives = 77/144 (53%), Gaps = 1/144 (0%)
Query: 1 MRKSIR-IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDV 59
M ++ R I+GIDPGL TGWGIV+ G L + G + + LA RL +++E + V
Sbjct: 1 MTRTERTILGIDPGLANTGWGIVEQCGPRLACTAYGCVSTAKDLPLAQRLRKIHEQMAAV 60
Query: 60 IKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVG 119
I + P +E V+ + + GQAR A+++ A + V E++P+ IK AV+G G
Sbjct: 61 IARFEPACVGIETVWFGVNVQSAFATGQARGAALVACAERDLEVLEFSPSQIKLAVVGTG 120
Query: 120 HGDKKQIHMMLKMLMPESFFKGKD 143
+K Q+ M++ L+ D
Sbjct: 121 SAEKDQVQYMVRQLLALEDVPRPD 144
>gi|261414852|ref|YP_003248535.1| crossover junction endodeoxyribonuclease RuvC [Fibrobacter
succinogenes subsp. succinogenes S85]
gi|261371308|gb|ACX74053.1| crossover junction endodeoxyribonuclease RuvC [Fibrobacter
succinogenes subsp. succinogenes S85]
gi|302326365|gb|ADL25566.1| crossover junction endodeoxyribonuclease RuvC [Fibrobacter
succinogenes subsp. succinogenes S85]
Length = 189
Score = 147 bits (371), Expect = 5e-34, Method: Composition-based stats.
Identities = 46/153 (30%), Positives = 74/153 (48%), Gaps = 1/153 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ I+GIDPG TG+ + G+ + + GT + ++L RL + L + ++
Sbjct: 1 MVILGIDPGSITTGYAFLKKTGNQIQVLEYGTFHANATKNLEDRLVHIVTELEKRLDHYH 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ A+E VF K+ + L LG R +++ + EY P +K+AV G G K+
Sbjct: 61 PDALAMEGVFFAKNVKSALVLGHIRGAILVACHRRGMTYEEYPPKVVKQAVTGNGAASKE 120
Query: 125 QIHMML-KMLMPESFFKGKDAADALAIAVCHAY 156
+ M+ L DA+DALAIA HA
Sbjct: 121 HVANMIFAHLGIVGGDLPLDASDALAIAWTHAN 153
>gi|333004716|gb|EGK24239.1| crossover junction endodeoxyribonuclease RuvC [Shigella flexneri
K-272]
gi|333018437|gb|EGK37735.1| crossover junction endodeoxyribonuclease RuvC [Shigella flexneri
K-227]
Length = 173
Score = 147 bits (371), Expect = 5e-34, Method: Composition-based stats.
Identities = 52/136 (38%), Positives = 83/136 (61%), Gaps = 1/136 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G L ++ SG I + L RL +Y G+T++I ++P
Sbjct: 3 IILGIDPGSRVTGYGVISQVGRQLSYLGSGCIRT-KVDDLPSRLKLIYAGVTEIITQFQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQVF+ K+A + LKLGQAR +AI++ +PV EYA +K+ V+G+G +K Q
Sbjct: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGMGSAEKSQ 121
Query: 126 IHMMLKMLMPESFFKG 141
+ M++ L+
Sbjct: 122 VQHMVRTLLKLPANPQ 137
>gi|320450527|ref|YP_004202623.1| crossover junction endodeoxyribonuclease RuvC [Thermus scotoductus
SA-01]
gi|320150696|gb|ADW22074.1| crossover junction endodeoxyribonuclease RuvC [Thermus scotoductus
SA-01]
Length = 166
Score = 147 bits (371), Expect = 5e-34, Method: Composition-based stats.
Identities = 43/164 (26%), Positives = 83/164 (50%), Gaps = 4/164 (2%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGD---NLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
+ ++GIDPG+ G G+V+V + + + ++ R+ +++ + + +
Sbjct: 1 MVVLGIDPGITHLGLGVVEVEPKGTLKARLLHGEVVRTSHKEPAQERVGRIHARVKEALA 60
Query: 62 NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
+ PE AVE+ F + K+G A +++ A +PV Y P +K+A+ G GH
Sbjct: 61 RFHPEALAVEEQFFYRQNELAYKVGWALGAVLVAAFEAGVPVYAYGPMQVKQALAGHGHA 120
Query: 122 DKKQIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHANSGYYK 164
K+++ +M++ ++ K ADALAIA+ HA++A K
Sbjct: 121 GKEEVALMVRGILGLKEAPKPSHLADALAIALTHAFYAKMQAAK 164
>gi|26248129|ref|NP_754169.1| Holliday junction resolvase [Escherichia coli CFT073]
gi|117624015|ref|YP_852928.1| Holliday junction resolvase [Escherichia coli APEC O1]
gi|237705817|ref|ZP_04536298.1| holliday junction resolvase [Escherichia sp. 3_2_53FAA]
gi|331642477|ref|ZP_08343612.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
H736]
gi|331647460|ref|ZP_08348552.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
M605]
gi|331653272|ref|ZP_08354277.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
M718]
gi|331673393|ref|ZP_08374161.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
TA280]
gi|331677744|ref|ZP_08378419.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
H591]
gi|332278967|ref|ZP_08391380.1| holliday junction resolvase [Shigella sp. D9]
gi|26108532|gb|AAN80734.1|AE016761_309 Crossover junction endodeoxyribonuclease ruvC [Escherichia coli
CFT073]
gi|115513139|gb|ABJ01214.1| crossover junction endodeoxyribonuclease [Escherichia coli APEC O1]
gi|195182925|dbj|BAG66493.1| Holliday junction nuclease [Escherichia coli O111:H-]
gi|226900574|gb|EEH86833.1| holliday junction resolvase [Escherichia sp. 3_2_53FAA]
gi|325496994|gb|EGC94853.1| Holliday junction resolvase [Escherichia fergusonii ECD227]
gi|331039275|gb|EGI11495.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
H736]
gi|331043184|gb|EGI15322.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
M605]
gi|331049370|gb|EGI21442.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
M718]
gi|331069591|gb|EGI40978.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
TA280]
gi|331074204|gb|EGI45524.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
H591]
gi|332101319|gb|EGJ04665.1| holliday junction resolvase [Shigella sp. D9]
Length = 174
Score = 147 bits (371), Expect = 5e-34, Method: Composition-based stats.
Identities = 52/136 (38%), Positives = 83/136 (61%), Gaps = 1/136 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G L ++ SG I + L RL +Y G+T++I ++P
Sbjct: 4 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRT-KVDDLPSRLKLIYAGVTEIITQFQP 62
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQVF+ K+A + LKLGQAR +AI++ +PV EYA +K+ V+G+G +K Q
Sbjct: 63 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 122
Query: 126 IHMMLKMLMPESFFKG 141
+ M++ L+
Sbjct: 123 VQHMVRTLLKLPANPQ 138
>gi|320539866|ref|ZP_08039525.1| component of RuvABC resolvasome, endonuclease [Serratia symbiotica
str. Tucson]
gi|320030052|gb|EFW12072.1| component of RuvABC resolvasome, endonuclease [Serratia symbiotica
str. Tucson]
Length = 173
Score = 147 bits (371), Expect = 6e-34, Method: Composition-based stats.
Identities = 60/163 (36%), Positives = 99/163 (60%), Gaps = 1/163 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G L +++SG I + V + + RL +Y G++++I ++P
Sbjct: 3 IILGIDPGSRITGYGLIRQQGRQLTYIASGCIRTVV-EDMPMRLKLIYAGVSEIITQFQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQVF+ K+ + LKLGQA +AI++ + V EYA +K+ V+G G +K Q
Sbjct: 62 DFFAIEQVFMAKNPDSALKLGQACGVAIVAAVNQNLDVFEYAARQVKQTVVGTGAAEKAQ 121
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
+ M++ L+ S DAADALAIA+ H + + + A +
Sbjct: 122 VQHMVRSLLKLSANPRADAADALAIAITHCHLSQNVLRMSAGR 164
>gi|21674482|ref|NP_662547.1| Holliday junction resolvase [Chlorobium tepidum TLS]
gi|27923852|sp|Q8KBW8|RUVC_CHLTE RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|21647671|gb|AAM72889.1| Holliday junction resolvase [Chlorobium tepidum TLS]
Length = 186
Score = 147 bits (371), Expect = 6e-34, Method: Composition-based stats.
Identities = 53/159 (33%), Positives = 79/159 (49%), Gaps = 1/159 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ ++GIDPG R+TG+G++ + G + +L R+ QL GL +VI+ +
Sbjct: 1 MIVLGIDPGSRKTGYGVIAETAAGYRVLGCGLVRPRAADTLHERISQLCAGLDEVIEQLK 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
PE A+E FV ++ + L LGQ R + + +PV EYAP IK +V G G K+
Sbjct: 61 PEAVALETAFVGRNVRSALILGQVRGAVLATVMRHSLPVREYAPREIKLSVTGTGSACKE 120
Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHANSGY 162
Q+ ML ++ K D DAL IA C S
Sbjct: 121 QVAAMLSRMLELGGELKPLDVTDALGIAYCDLARGASSL 159
>gi|163738341|ref|ZP_02145756.1| Holliday junction resolvase [Phaeobacter gallaeciensis BS107]
gi|161388262|gb|EDQ12616.1| Holliday junction resolvase [Phaeobacter gallaeciensis BS107]
Length = 165
Score = 147 bits (371), Expect = 6e-34, Method: Composition-based stats.
Identities = 77/161 (47%), Positives = 109/161 (67%), Gaps = 1/161 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPGLR GWG+++ G L V++G + L RL L+ + +VI +R
Sbjct: 1 MRILGIDPGLRNLGWGVIESRGTRLSHVANGVC-TSDGDDLGERLLSLHNQVVEVIAAYR 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P++AA+EQ FVNKD TLKLGQAR +A+++ A A +PV EYAPN +KK V+GVGH K+
Sbjct: 60 PDQAAIEQTFVNKDGAGTLKLGQARGVALMTLAQAGLPVGEYAPNRVKKTVVGVGHAAKE 119
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
QI M+K+ +P K DAADALAIA+CHA++ + ++
Sbjct: 120 QILHMVKLQLPGCLPKNADAADALAIAICHAFYGGTQQRQL 160
>gi|308187174|ref|YP_003931305.1| crossover junction endodeoxyribonuclease [Pantoea vagans C9-1]
gi|308057684|gb|ADO09856.1| crossover junction endodeoxyribonuclease [Pantoea vagans C9-1]
Length = 175
Score = 147 bits (371), Expect = 6e-34, Method: Composition-based stats.
Identities = 51/136 (37%), Positives = 81/136 (59%), Gaps = 1/136 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G L ++ SG I + + L RL +Y G+ ++I + P
Sbjct: 3 IILGIDPGSRITGYGVIRQTGRQLTYLGSGCIRTNTPE-LPARLKLIYAGVCEIITQFSP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQVF+ K+A + LKLGQAR AI++ +PV EYA +K+ V+G+G +K Q
Sbjct: 62 DFFAIEQVFMAKNADSALKLGQARGAAIVAAVNHDLPVFEYAARQVKQTVVGIGSAEKSQ 121
Query: 126 IHMMLKMLMPESFFKG 141
+ M++ L+
Sbjct: 122 VQHMVRTLLKLPANPQ 137
>gi|290475276|ref|YP_003468164.1| Holliday junction nuclease [Xenorhabdus bovienii SS-2004]
gi|289174597|emb|CBJ81391.1| Holliday junction nuclease [Xenorhabdus bovienii SS-2004]
Length = 173
Score = 147 bits (371), Expect = 6e-34, Method: Composition-based stats.
Identities = 54/136 (39%), Positives = 85/136 (62%), Gaps = 1/136 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G L ++ SG I + L RL ++Y G+T++I +RP
Sbjct: 3 IILGIDPGSRVTGYGVIRQQGRQLIYIGSGCIRT-KVDDLPNRLQRIYAGITEIIIQFRP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQ+F+ K+A + LKLGQAR +AI++ A IPV EYA +K+ V+G G +K Q
Sbjct: 62 DVFAIEQIFMAKNADSALKLGQARGVAIVAAANESIPVFEYAARQVKQTVVGTGAAEKSQ 121
Query: 126 IHMMLKMLMPESFFKG 141
+ M++ ++ S
Sbjct: 122 VQHMVRSMLKLSANPQ 137
>gi|282855631|ref|ZP_06264945.1| crossover junction endodeoxyribonuclease RuvC [Pyramidobacter
piscolens W5455]
gi|282586561|gb|EFB91815.1| crossover junction endodeoxyribonuclease RuvC [Pyramidobacter
piscolens W5455]
Length = 172
Score = 147 bits (371), Expect = 6e-34, Method: Composition-based stats.
Identities = 44/146 (30%), Positives = 80/146 (54%), Gaps = 1/146 (0%)
Query: 8 IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEE 67
+GIDPG+ R G+G V +G + ++ G + + Q + R+ LY+G+ + I+N P
Sbjct: 11 LGIDPGIGRLGYGFVCQSGSSYRALAYGCLETPPHQDTSVRIKALYDGVREQIENCSPHF 70
Query: 68 AAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIH 127
+VE+++ ++ + Q R +L A R+P+ E P+ +K V G G +K+Q+
Sbjct: 71 MSVERLYFGQNRTTAEAVWQVRGAILLLGAQYRLPIIEPKPSEVKLTVCGDGTAEKRQVQ 130
Query: 128 MMLKMLMPE-SFFKGKDAADALAIAV 152
+M++ L+ + D ADAL IA+
Sbjct: 131 LMIQQLLNLPEIPRPDDTADALGIAL 156
>gi|268589738|ref|ZP_06123959.1| crossover junction endodeoxyribonuclease RuvC [Providencia rettgeri
DSM 1131]
gi|291314890|gb|EFE55343.1| crossover junction endodeoxyribonuclease RuvC [Providencia rettgeri
DSM 1131]
Length = 173
Score = 147 bits (371), Expect = 6e-34, Method: Composition-based stats.
Identities = 54/136 (39%), Positives = 86/136 (63%), Gaps = 1/136 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G L ++ SG I + V L RL ++Y G++++I ++P
Sbjct: 3 IILGIDPGSRVTGYGVIRQQGRQLLYLGSGCIRTQV-DDLPSRLQRIYAGVSEIITQYQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ ++EQVF+ K+A + LKLGQAR +AI++ A IPV EYA +K+ V+G G +K Q
Sbjct: 62 DILSIEQVFMAKNADSALKLGQARGVAIVAAANMNIPVFEYAARQVKQTVVGTGAAEKSQ 121
Query: 126 IHMMLKMLMPESFFKG 141
+ M+K ++ S
Sbjct: 122 VQHMVKSILKLSASPQ 137
>gi|319406255|emb|CBI79892.1| Holliday junction nuclease ruvC [Bartonella sp. AR 15-3]
Length = 169
Score = 147 bits (371), Expect = 6e-34, Method: Composition-based stats.
Identities = 104/168 (61%), Positives = 134/168 (79%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M ++IRIIGIDPGLRRTGWG++D+ G++L FV+SGT+ S + LA RLCQ+YEGL+ VI
Sbjct: 1 MVETIRIIGIDPGLRRTGWGVIDLCGNHLNFVASGTLHSNAQNDLASRLCQIYEGLSKVI 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
+ P EAAVE VFVNKDA ATLKLGQARAIA+L PA + +SEYAPN +KK+VIGVGH
Sbjct: 61 HQFMPHEAAVEHVFVNKDAAATLKLGQARAIALLVPAQEGLSISEYAPNKVKKSVIGVGH 120
Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
G+K+QIHMM+K+L+P + F DAADALA+A+CH+ H S Y++ +
Sbjct: 121 GEKEQIHMMVKILLPRAEFDSSDAADALALAICHSAHRTSSSYRLKAS 168
>gi|260598337|ref|YP_003210908.1| Holliday junction resolvase [Cronobacter turicensis z3032]
gi|260217514|emb|CBA31693.1| Crossover junction endodeoxyribonuclease ruvC [Cronobacter
turicensis z3032]
Length = 173
Score = 147 bits (371), Expect = 6e-34, Method: Composition-based stats.
Identities = 53/136 (38%), Positives = 83/136 (61%), Gaps = 1/136 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G L ++ SG I + V L RL +Y G++++I + P
Sbjct: 3 IILGIDPGSRVTGYGVIRQTGRQLTYLGSGCIRTSV-TDLPSRLKLIYAGVSEIITQFHP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQVF+ K+A + LKLGQAR AI++ +PV EYA +K+ V+G+G +K Q
Sbjct: 62 DYFAIEQVFMAKNADSALKLGQARGAAIVAAVNQDLPVFEYAARQVKQTVVGIGSAEKSQ 121
Query: 126 IHMMLKMLMPESFFKG 141
+ M++ L+ S
Sbjct: 122 VQHMVRTLLKLSANPQ 137
>gi|238756968|ref|ZP_04618156.1| Crossover junction endodeoxyribonuclease ruvC [Yersinia aldovae
ATCC 35236]
gi|238704798|gb|EEP97327.1| Crossover junction endodeoxyribonuclease ruvC [Yersinia aldovae
ATCC 35236]
Length = 198
Score = 147 bits (371), Expect = 6e-34, Method: Composition-based stats.
Identities = 52/136 (38%), Positives = 82/136 (60%), Gaps = 1/136 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G L ++ SG I + V + RL +Y G+T++I ++P
Sbjct: 28 IILGIDPGSRVTGYGVIRQQGRQLIYLGSGCIRTVV-DDMPTRLKLIYAGVTEIITQFQP 86
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQVF+ K+ + LKLGQAR AI++ +PVSEYA +K+ V+G G +K Q
Sbjct: 87 DFFAIEQVFMAKNPDSALKLGQARGAAIVAAVNLNLPVSEYAARQVKQTVVGTGAAEKSQ 146
Query: 126 IHMMLKMLMPESFFKG 141
+ M++ L+
Sbjct: 147 VQHMVRSLLKLPANPQ 162
>gi|162453353|ref|YP_001615720.1| Holliday junction resolvase RuvC [Sorangium cellulosum 'So ce 56']
gi|189046083|sp|A9FR00|RUVC_SORC5 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|161163935|emb|CAN95240.1| Holliday Junction Resolvase RuvC [Sorangium cellulosum 'So ce 56']
Length = 179
Score = 147 bits (371), Expect = 6e-34, Method: Composition-based stats.
Identities = 57/150 (38%), Positives = 88/150 (58%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+R++GIDPG R GWG++ G + V+ G I + A RL ++ + L VI +
Sbjct: 1 MRVLGIDPGSRHLGWGLLVRQGTRIEHVAHGVIDIDTSGTFAARLVEIDDELGKVIASHA 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ AAVE +F KDA + KLG AR + +L A A +P+SEY P +K+ ++G G +K
Sbjct: 61 PDAAAVESLFFAKDAQSAAKLGHARGVVLLRLARAGVPISEYPPALVKRTIVGRGAAEKA 120
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCH 154
Q+ ++ ++ + DAADALAIA+ H
Sbjct: 121 QVAQVMTAVLRLAAPPRPDAADALAIAMTH 150
>gi|251789859|ref|YP_003004580.1| Holliday junction resolvase [Dickeya zeae Ech1591]
gi|247538480|gb|ACT07101.1| crossover junction endodeoxyribonuclease RuvC [Dickeya zeae
Ech1591]
Length = 173
Score = 147 bits (371), Expect = 6e-34, Method: Composition-based stats.
Identities = 53/136 (38%), Positives = 82/136 (60%), Gaps = 1/136 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+GIV G + ++ SG I + V L RL +Y G++++I ++P
Sbjct: 3 IILGIDPGSRVTGYGIVRQQGRQISYLGSGCIRTAV-DDLPTRLKLIYAGVSEIITQFQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQVF+ ++A + LKLGQAR AI++ +PV EYA +K+ V+G G +K Q
Sbjct: 62 DFFAIEQVFMARNADSALKLGQARGAAIVAAVNQSLPVFEYAARQVKQTVVGTGAAEKSQ 121
Query: 126 IHMMLKMLMPESFFKG 141
+ M+K L+
Sbjct: 122 VQHMVKTLLKLPASPQ 137
>gi|152991596|ref|YP_001357318.1| Holliday junction resolvase [Nitratiruptor sp. SB155-2]
gi|166233274|sp|A6Q652|RUVC_NITSB RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|151423457|dbj|BAF70961.1| crossover junction endodeoxyribonuclease RuvC [Nitratiruptor sp.
SB155-2]
Length = 158
Score = 147 bits (371), Expect = 6e-34, Method: Composition-based stats.
Identities = 46/156 (29%), Positives = 76/156 (48%), Gaps = 2/156 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ I+GIDPG R G+ IV++ ++ + +G + + ++L Q+ EGL V +
Sbjct: 1 MNILGIDPGSRNLGYAIVELNNSHMKLIEAGLVKIKPSE-FQYQLSQMIEGLDMVFSSHS 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
+E A+E +F + LKL Q R L S Y P +KKA+ G K+
Sbjct: 60 VDEVAMEDIFYAYNPQTVLKLAQFRGALALRIIQLHGNFSAYTPLQVKKALTGKAKASKE 119
Query: 125 QIHMMLKMLMP-ESFFKGKDAADALAIAVCHAYHAN 159
Q+ M+K ++ + K D DA+A+A+ HA
Sbjct: 120 QVAFMVKKILGIKKEVKPLDITDAMAVAITHAQRLR 155
>gi|239995980|ref|ZP_04716504.1| Holliday junction resolvase [Alteromonas macleodii ATCC 27126]
Length = 172
Score = 147 bits (371), Expect = 6e-34, Method: Composition-based stats.
Identities = 68/164 (41%), Positives = 104/164 (63%), Gaps = 2/164 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ I+GIDPG R TG+G++ L +V+SG I L RL ++ G+ D+I+ ++
Sbjct: 1 MVILGIDPGSRITGYGLIARKQGKLVYVASGCIRVGT-ADLPSRLANIFTGVGDIIRQYK 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P++ A+EQVF+ K+ + LKLGQAR AI++ A++PV+EY+ IK++V+G G DK
Sbjct: 60 PDQFAIEQVFMAKNPDSALKLGQARGAAIVAATQAQLPVAEYSARQIKQSVVGKGGADKT 119
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
Q+ M+K L+ S DAADALA+A+CHA+ S +A Q
Sbjct: 120 QVQHMVKHLLNLSGTPQADAADALAVALCHAHTEQS-LINMAGQ 162
>gi|291617755|ref|YP_003520497.1| RuvC [Pantoea ananatis LMG 20103]
gi|291152785|gb|ADD77369.1| RuvC [Pantoea ananatis LMG 20103]
gi|327394174|dbj|BAK11596.1| Crossover junction endodeoxyribonuclease RuvC [Pantoea ananatis
AJ13355]
Length = 175
Score = 147 bits (371), Expect = 6e-34, Method: Composition-based stats.
Identities = 52/136 (38%), Positives = 80/136 (58%), Gaps = 1/136 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G L ++ SG I + L RL +Y G+ ++I + P
Sbjct: 3 IILGIDPGSRVTGYGVIRQTGRQLTYLGSGCIRTNT-TELPARLKLIYAGVCEIITQFSP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQVF+ K+A + LKLGQAR AI++ +PV EYA +K+ V+G G +K Q
Sbjct: 62 DFFAIEQVFMAKNADSALKLGQARGAAIVAAVNHDLPVFEYAARQVKQTVVGTGGAEKSQ 121
Query: 126 IHMMLKMLMPESFFKG 141
+ M+K L+ +
Sbjct: 122 VQHMVKSLLKLAANPQ 137
>gi|303249144|ref|ZP_07335384.1| crossover junction endodeoxyribonuclease RuvC [Desulfovibrio
fructosovorans JJ]
gi|302489469|gb|EFL49416.1| crossover junction endodeoxyribonuclease RuvC [Desulfovibrio
fructosovorans JJ]
Length = 169
Score = 147 bits (371), Expect = 6e-34, Method: Composition-based stats.
Identities = 57/153 (37%), Positives = 84/153 (54%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
++G+DPG R TG+G V L +++G + + RL +Y + +I P
Sbjct: 9 VLGLDPGSRVTGYGFVRERSGVLELMAAGVVRTGWDTDFCRRLGTIYTAVAKLIGQHAPV 68
Query: 67 EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
EAAVE VFV+K+A LKLGQAR A+ + ++A +PV Y P IKK+++G G +K Q+
Sbjct: 69 EAAVENVFVSKNAGTALKLGQARGAALAACSVAGLPVFSYEPTIIKKSLVGTGRAEKSQV 128
Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHAN 159
M+ ++ DA DALA AVCH
Sbjct: 129 AFMVGRVLACRETFAVDATDALAAAVCHLNQRR 161
>gi|313679885|ref|YP_004057624.1| holliday junction endonuclease ruvc [Oceanithermus profundus DSM
14977]
gi|313152600|gb|ADR36451.1| Holliday junction endonuclease RuvC [Oceanithermus profundus DSM
14977]
Length = 163
Score = 146 bits (370), Expect = 7e-34, Method: Composition-based stats.
Identities = 49/158 (31%), Positives = 79/158 (50%), Gaps = 1/158 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ ++GIDPG+ G G+V+ G F+ + + + A R+ +YE + I R
Sbjct: 1 MVVLGIDPGISNLGLGVVEGDGARARFLHAELVRTRHGDPAAARVGAIYEAVAGAIAEHR 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
PE AVE F + K+G A L+ A + V +Y P +K+A++G G DK+
Sbjct: 61 PEAVAVEAQFFYRQNELAYKVGWAMGAVFLAAGQAGLEVFQYGPMEVKRALVGTGRADKR 120
Query: 125 QIHMMLKMLMPESF-FKGKDAADALAIAVCHAYHANSG 161
Q+ M++ L+ AADALA+A+ H H +G
Sbjct: 121 QVAFMVRALLGLKQTPSSSHAADALAVALTHLAHLRTG 158
>gi|300723090|ref|YP_003712388.1| Holliday junction nuclease [Xenorhabdus nematophila ATCC 19061]
gi|297629605|emb|CBJ90208.1| Holliday junction nuclease [Xenorhabdus nematophila ATCC 19061]
Length = 173
Score = 146 bits (370), Expect = 7e-34, Method: Composition-based stats.
Identities = 54/136 (39%), Positives = 84/136 (61%), Gaps = 1/136 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G L ++ SG I + L RL ++Y G+T++I ++P
Sbjct: 3 IILGIDPGSRVTGYGVIRQQGRQLIYLGSGCIRT-KVDDLPSRLQRIYAGITEIITQFQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQVF+ K+ + LKLGQAR +AI++ A IPV EYA +K+ V+G G +K Q
Sbjct: 62 DAFAIEQVFMAKNPDSALKLGQARGVAIVAAANQSIPVFEYAARQVKQTVVGTGAAEKSQ 121
Query: 126 IHMMLKMLMPESFFKG 141
I M++ ++ S
Sbjct: 122 IQHMVRSMLKLSANPQ 137
>gi|114566957|ref|YP_754111.1| hypothetical protein Swol_1433 [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
gi|122318039|sp|Q0AX14|RUVC_SYNWW RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|114337892|gb|ABI68740.1| Holliday junction endonuclease RuvC [Syntrophomonas wolfei subsp.
wolfei str. Goettingen]
Length = 172
Score = 146 bits (370), Expect = 7e-34, Method: Composition-based stats.
Identities = 42/138 (30%), Positives = 84/138 (60%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
++++GIDPG TG+G++ + ++ GTIV+ + + RL Q+Y L ++ ++
Sbjct: 1 MKVLGIDPGTATTGYGLIRSEAGRVKAITYGTIVTPAQLEMPLRLYQIYRELQALLMEYK 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ AVE++F N+++ + + Q+R + +++ A A IPV+EY P +K+AV+G G +KK
Sbjct: 61 PDAVAVEEIFYNRNSKTVITVAQSRGVILMTAAAAGIPVAEYTPLQVKQAVVGYGAAEKK 120
Query: 125 QIHMMLKMLMPESFFKGK 142
Q+ +M++ ++
Sbjct: 121 QVQLMVQKILGLQQLPRP 138
>gi|75676910|ref|YP_319331.1| Holliday junction resolvase [Nitrobacter winogradskyi Nb-255]
gi|90146468|sp|Q3SP12|RUVC_NITWN RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|74421780|gb|ABA05979.1| Holliday junction endonuclease RuvC [Nitrobacter winogradskyi
Nb-255]
Length = 172
Score = 146 bits (370), Expect = 7e-34, Method: Composition-based stats.
Identities = 90/165 (54%), Positives = 118/165 (71%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
+ IRI+GIDPGLRRTGWG++++ G+ L FV G++ + +LA RL ++ GL V+
Sbjct: 2 ISSPIRILGIDPGLRRTGWGVLEIDGNRLMFVGCGSVETREHMALASRLLAIHAGLGAVL 61
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
+RP EAA+EQ FVNKD VATLKLGQAR +A+L+PAL I V+EYAPN +KK V+G GH
Sbjct: 62 DQFRPSEAAIEQTFVNKDGVATLKLGQARGVAMLAPALFGIAVAEYAPNQVKKTVVGAGH 121
Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
DK QI MLK+L+P++ K DAADALAIA+ HA+H S
Sbjct: 122 ADKAQIQAMLKILLPKADPKSADAADALAIAITHAHHRKSAALAA 166
>gi|311694933|gb|ADP97806.1| crossover junction endodeoxyribonuclease RuvC [marine bacterium
HP15]
Length = 175
Score = 146 bits (370), Expect = 7e-34, Method: Composition-based stats.
Identities = 65/163 (39%), Positives = 102/163 (62%), Gaps = 1/163 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+G+DPG R TG+G++ G ++ ++ SG I + +A RL +++ L +I +RP
Sbjct: 3 IILGVDPGSRITGYGVIRADGRHIEYIDSGCIRV-GEKPMAERLQTIFQSLATLIGEYRP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
EE A+EQVF+ ++ + LKLGQAR AI+S A + + V EY+ +K+AV+G G DK Q
Sbjct: 62 EEFAIEQVFMARNPDSALKLGQARGAAIVSAANSGLAVHEYSARQVKQAVVGKGGADKSQ 121
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
+ M+++L+ S DAADALAIA+CHA+ + S +
Sbjct: 122 VQHMVQVLLSLSRKPQADAADALAIAMCHAHMSQSILRVASGA 164
>gi|238895439|ref|YP_002920174.1| Holliday junction resolvase [Klebsiella pneumoniae NTUH-K2044]
gi|238547756|dbj|BAH64107.1| Holliday junction resolvase [Klebsiella pneumoniae subsp.
pneumoniae NTUH-K2044]
Length = 174
Score = 146 bits (370), Expect = 7e-34, Method: Composition-based stats.
Identities = 52/136 (38%), Positives = 83/136 (61%), Gaps = 1/136 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G L ++ SG I + L RL +Y G+T++I ++P
Sbjct: 4 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRT-KVDDLPSRLKLIYAGVTEIITQFQP 62
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQVF+ K+A + LKLGQAR +AI++ +PV EYA +K+ V+G+G +K Q
Sbjct: 63 DYFAIEQVFMAKNADSALKLGQARGVAIVAATNQALPVFEYAARQVKQTVVGIGSAEKSQ 122
Query: 126 IHMMLKMLMPESFFKG 141
+ M++ L+
Sbjct: 123 VQHMVRTLLKLPANPQ 138
>gi|260431116|ref|ZP_05785087.1| crossover junction endodeoxyribonuclease RuvC [Silicibacter
lacuscaerulensis ITI-1157]
gi|260414944|gb|EEX08203.1| crossover junction endodeoxyribonuclease RuvC [Silicibacter
lacuscaerulensis ITI-1157]
Length = 165
Score = 146 bits (370), Expect = 8e-34, Method: Composition-based stats.
Identities = 79/161 (49%), Positives = 110/161 (68%), Gaps = 1/161 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPGLR GWG+++ G L V++G S L RL L+ + +VI +
Sbjct: 1 MRILGIDPGLRTLGWGVIESHGSRLSHVANGLCKSD-GDDLGERLLSLHNQIVEVIAEHQ 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P++AA+EQ FVNKD TLKLGQAR +A+L+ A A +PV EYAPN +KK V+GVGH +K+
Sbjct: 60 PDQAAIEQTFVNKDGAGTLKLGQARGVALLTLAQAGLPVGEYAPNRVKKTVVGVGHAEKE 119
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
Q+ M+K+ +P KG DAADALAIA+CHA++ + +I
Sbjct: 120 QVLHMVKLQLPGCQPKGADAADALAIAICHAFYGATPQARI 160
>gi|54294186|ref|YP_126601.1| crossover junction endodeoxyribonuclease ruvC [Legionella
pneumophila str. Lens]
gi|81601404|sp|Q5WX48|RUVC_LEGPL RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|53754018|emb|CAH15489.1| Crossover junction endodeoxyribonuclease ruvC [Legionella
pneumophila str. Lens]
Length = 174
Score = 146 bits (370), Expect = 8e-34, Method: Composition-based stats.
Identities = 59/163 (36%), Positives = 103/163 (63%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ + + ++ SG I + L+ +L Q+Y+G+ +++ ++ P
Sbjct: 3 IILGIDPGSRVTGYGLIKESDRKIAYIDSGCIRTSNDVELSHKLLQIYDGICELMDHYSP 62
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
E A+EQ+F++ + + LKLG AR +A+++ A R+ + EY+ IK++V+G G +K Q
Sbjct: 63 TEVAIEQIFMHNNPNSALKLGHARGVAMVAAASHRVKICEYSAREIKQSVVGYGAAEKDQ 122
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
+ M+ L+ + KDAADALAIA+CH++ N I S+
Sbjct: 123 VSHMVVELLQLNRAPQKDAADALAIAICHSHMRNGLSKLIGSR 165
>gi|313901945|ref|ZP_07835362.1| crossover junction endodeoxyribonuclease RuvC [Thermaerobacter
subterraneus DSM 13965]
gi|313467791|gb|EFR63288.1| crossover junction endodeoxyribonuclease RuvC [Thermaerobacter
subterraneus DSM 13965]
Length = 187
Score = 146 bits (370), Expect = 8e-34, Method: Composition-based stats.
Identities = 51/136 (37%), Positives = 85/136 (62%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
++++GIDPG G+G+V VAG L V+ G I + Q A RL +Y L ++++ ++
Sbjct: 1 MQVLGIDPGTATMGFGVVAVAGTTLVPVTYGVIRTPASQPPAQRLAAIYRDLQELLRRYQ 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ AVE++F K+ + L +GQAR +A+L+ A A +PV EYAP+ +K+AV+G G K
Sbjct: 61 PQAMAVERLFFQKNRSSALHVGQARGVALLAAAQAGLPVHEYAPHEVKQAVVGYGRASKV 120
Query: 125 QIHMMLKMLMPESFFK 140
Q+ M++ L+ +
Sbjct: 121 QVQRMVQALLGLARPP 136
>gi|238898057|ref|YP_002923738.1| Holliday junction nuclease [Candidatus Hamiltonella defensa 5AT
(Acyrthosiphon pisum)]
gi|259495689|sp|C4K4U7|RUVC_HAMD5 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|229465816|gb|ACQ67590.1| Holliday junction nuclease [Candidatus Hamiltonella defensa 5AT
(Acyrthosiphon pisum)]
Length = 159
Score = 146 bits (370), Expect = 8e-34, Method: Composition-based stats.
Identities = 53/136 (38%), Positives = 85/136 (62%), Gaps = 1/136 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ + L ++ SG I + + L +L +Y G+T++I +RP
Sbjct: 3 IILGIDPGSRITGYGVISEKKNQLIYLGSGCIRT-LDNGLPHKLKLIYAGVTEIISQFRP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ +EQVF++K+A + LKLGQAR +AI++ A +PV EYA +K+ V+G G DKKQ
Sbjct: 62 DFFCIEQVFMSKNADSALKLGQARGVAIVAAANQNLPVFEYAARQVKQTVVGNGAADKKQ 121
Query: 126 IHMMLKMLMPESFFKG 141
+ M++ L+
Sbjct: 122 VQHMVRYLLKLPSAPN 137
>gi|170718043|ref|YP_001785082.1| Holliday junction resolvase [Haemophilus somnus 2336]
gi|168826172|gb|ACA31543.1| crossover junction endodeoxyribonuclease RuvC [Haemophilus somnus
2336]
Length = 199
Score = 146 bits (370), Expect = 8e-34, Method: Composition-based stats.
Identities = 55/136 (40%), Positives = 82/136 (60%), Gaps = 1/136 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G+V G L ++ SG I + + L RL ++Y G+T++I + P
Sbjct: 13 IILGIDPGSRVTGYGVVRQVGHKLEYLGSGVIRTSI-DDLPTRLKRIYAGITEIITQFNP 71
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
E A+EQVF+ K+ + LKLGQAR AI++ +PV EY+ TIK+ V+G G +K Q
Sbjct: 72 NEFAIEQVFMAKNPDSALKLGQARGTAIVAAVNQNLPVFEYSARTIKQTVVGTGAAEKSQ 131
Query: 126 IHMMLKMLMPESFFKG 141
+ M+ L+ S
Sbjct: 132 VQEMVVRLLQLSDKPQ 147
>gi|271500733|ref|YP_003333758.1| crossover junction endodeoxyribonuclease RuvC [Dickeya dadantii
Ech586]
gi|270344288|gb|ACZ77053.1| crossover junction endodeoxyribonuclease RuvC [Dickeya dadantii
Ech586]
Length = 173
Score = 146 bits (370), Expect = 8e-34, Method: Composition-based stats.
Identities = 54/136 (39%), Positives = 83/136 (61%), Gaps = 1/136 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+GIV G + ++ SG I + V L RL +Y G++++I ++P
Sbjct: 3 IILGIDPGSRVTGYGIVRQQGRQITYLGSGCIRTGV-DDLPTRLKLIYAGVSEIITQFQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQVF+ ++A + LKLGQAR AI++ +PV EYA +K+ V+G G +K Q
Sbjct: 62 DYFAIEQVFMARNADSALKLGQARGAAIVAAVNQSLPVFEYAARQVKQTVVGTGAAEKSQ 121
Query: 126 IHMMLKMLMPESFFKG 141
+ M+K L+ S
Sbjct: 122 VQHMVKTLLKLSANPQ 137
>gi|332799126|ref|YP_004460625.1| Crossover junction endodeoxyribonuclease ruvC [Tepidanaerobacter
sp. Re1]
gi|332696861|gb|AEE91318.1| Crossover junction endodeoxyribonuclease ruvC [Tepidanaerobacter
sp. Re1]
Length = 166
Score = 146 bits (369), Expect = 9e-34, Method: Composition-based stats.
Identities = 50/138 (36%), Positives = 86/138 (62%), Gaps = 1/138 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ I+G+DPG+ +G+GI+ N V G I + + ++ +RL Q++EG ++I+ ++
Sbjct: 1 MLIMGVDPGIAISGYGIISNEQSNCYVVEYGVIRTPPKLAMPYRLKQIHEGYIELIQKYK 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ AVE++F NK+A + +GQAR +A+L+ AL++I V EY P +K+AV+G G DK+
Sbjct: 61 PDVVAVEELFFNKNAKTIISVGQARGVAVLAAALSKIEVFEYTPLQVKQAVVGYGRADKQ 120
Query: 125 QIHMMLKMLMPESF-FKG 141
Q+ M+K K
Sbjct: 121 QVQQMIKTSFNLEELPKP 138
>gi|148358829|ref|YP_001250036.1| crossover junction endodeoxyribonuclease RuvC [Legionella
pneumophila str. Corby]
gi|296106874|ref|YP_003618574.1| crossover junction endodeoxyribonuclease RuvC [Legionella
pneumophila 2300/99 Alcoy]
gi|166233201|sp|A5IBE0|RUVC_LEGPC RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|148280602|gb|ABQ54690.1| crossover junction endodeoxyribonuclease RuvC [Legionella
pneumophila str. Corby]
gi|295648775|gb|ADG24622.1| crossover junction endodeoxyribonuclease RuvC [Legionella
pneumophila 2300/99 Alcoy]
Length = 174
Score = 146 bits (369), Expect = 9e-34, Method: Composition-based stats.
Identities = 59/163 (36%), Positives = 102/163 (62%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ + + ++ SG I + L+ +L Q+Y+G+ +++ ++ P
Sbjct: 3 IILGIDPGSRVTGYGLIKESDRKIAYIDSGCIRTSNDAELSHKLLQIYDGICELMDHYSP 62
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
E A+EQ+F++ + + LKLG AR +A+++ A R + EY+ IK++V+G G +K Q
Sbjct: 63 TEVAIEQIFMHNNPNSALKLGHARGVAMVAAASHRAKICEYSAREIKQSVVGYGAAEKDQ 122
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
+ M+ L+ + KDAADALAIA+CH++ N I S+
Sbjct: 123 VSHMVVELLQLNRAPQKDAADALAIAICHSHMRNGLSKLIGSR 165
>gi|317048521|ref|YP_004116169.1| crossover junction endodeoxyribonuclease RuvC [Pantoea sp. At-9b]
gi|316950138|gb|ADU69613.1| crossover junction endodeoxyribonuclease RuvC [Pantoea sp. At-9b]
Length = 175
Score = 146 bits (369), Expect = 9e-34, Method: Composition-based stats.
Identities = 52/136 (38%), Positives = 81/136 (59%), Gaps = 1/136 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G L ++ SG I + V L RL +Y G++++I + P
Sbjct: 3 IILGIDPGSRVTGYGVIRQTGRQLSYLGSGCIRTNV-TDLPSRLKLIYAGVSEIITQFSP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQVF+ K+A + LKLGQAR AI++ +PV EYA +K+ V G+G +K Q
Sbjct: 62 DFFAIEQVFMAKNADSALKLGQARGAAIVAAVNLDLPVFEYAARQVKQTVTGIGSAEKSQ 121
Query: 126 IHMMLKMLMPESFFKG 141
+ M++ L+
Sbjct: 122 VQHMVRTLLKLPANPQ 137
>gi|54308307|ref|YP_129327.1| Holliday junction resolvase [Photobacterium profundum SS9]
gi|90411662|ref|ZP_01219672.1| Holliday junction resolvase [Photobacterium profundum 3TCK]
gi|81615323|sp|Q6LT51|RUVC_PHOPR RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|46912735|emb|CAG19525.1| putative crossover junctionendodeoxyribonuclease RuvC
[Photobacterium profundum SS9]
gi|90327552|gb|EAS43905.1| Holliday junction resolvase [Photobacterium profundum 3TCK]
Length = 173
Score = 146 bits (369), Expect = 9e-34, Method: Composition-based stats.
Identities = 67/155 (43%), Positives = 101/155 (65%), Gaps = 1/155 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G NL ++ SG I + + + RL Q+Y G+++VI ++P
Sbjct: 3 IILGIDPGSRITGYGVIRQVGRNLEYLGSGCIRTSA-EDIPGRLKQIYAGVSEVITQFQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+E+VF+ K+A + LKLGQAR AI++ A +PVSEYA IK+AV+G G DK Q
Sbjct: 62 DTFAIEEVFMGKNASSALKLGQARGSAIVAAVNADLPVSEYAARLIKQAVVGTGAADKAQ 121
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
+ M+ ++ DAADALA+A+CHA+ +
Sbjct: 122 VQHMVCSVLKLPGKPQADAADALAVAICHAHTHKT 156
>gi|332161517|ref|YP_004298094.1| Holliday junction resolvase [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|318605499|emb|CBY26997.1| crossover junction endodeoxyribonuclease RuvC [Yersinia
enterocolitica subsp. palearctica Y11]
gi|325665747|gb|ADZ42391.1| Holliday junction resolvase [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|330860792|emb|CBX71079.1| crossover junction endodeoxyribonuclease ruvC [Yersinia
enterocolitica W22703]
Length = 173
Score = 146 bits (369), Expect = 9e-34, Method: Composition-based stats.
Identities = 50/136 (36%), Positives = 81/136 (59%), Gaps = 1/136 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
++GIDPG R TG+G++ G L ++ SG I + V + RL +Y G+T++I ++P
Sbjct: 3 IVLGIDPGSRVTGYGVIRQQGRQLTYLGSGCIRTVV-DDMPTRLKLIYAGVTEIITQFQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQVF+ K+ + LKLGQAR AI++ +PV EYA +K+ V+G G +K Q
Sbjct: 62 DFFAIEQVFMAKNPDSALKLGQARGAAIVAAVNLNLPVFEYAARQVKQTVVGTGAAEKSQ 121
Query: 126 IHMMLKMLMPESFFKG 141
+ M++ L+
Sbjct: 122 VQHMVRSLLKLPANPQ 137
>gi|119477228|ref|ZP_01617464.1| Holliday junction resolvase [marine gamma proteobacterium HTCC2143]
gi|119449591|gb|EAW30829.1| Holliday junction resolvase [marine gamma proteobacterium HTCC2143]
Length = 173
Score = 146 bits (369), Expect = 9e-34, Method: Composition-based stats.
Identities = 64/161 (39%), Positives = 100/161 (62%), Gaps = 1/161 (0%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
I+GIDPG R+TG+GI++V G + +V+SG I + Q L R+ L + ++I P+
Sbjct: 4 ILGIDPGSRKTGFGIINVNGSHHDYVTSGVIRLPIEQELPERIKVLVSSIQEIIALHCPQ 63
Query: 67 EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
+ ++EQVF+ +A + LKLGQAR AI + + V+EY+ IK+AV+G G K+Q+
Sbjct: 64 QVSIEQVFMASNAGSALKLGQARGAAIAACVSNDLEVAEYSARQIKQAVVGTGAAKKEQV 123
Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
M+K+L+ +DAADALA A+CHA+ + S +A
Sbjct: 124 QHMVKILLKLPAMPQEDAADALAAAICHAHTSAS-LVNLAG 163
>gi|54297205|ref|YP_123574.1| Holliday junction resolvase [Legionella pneumophila str. Paris]
gi|81601888|sp|Q5X5S0|RUVC_LEGPA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|53750990|emb|CAH12401.1| Crossover junction endodeoxyribonuclease ruvC [Legionella
pneumophila str. Paris]
Length = 174
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 59/163 (36%), Positives = 102/163 (62%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ + + ++ SG I + L+ +L Q+Y+G+ +++ ++ P
Sbjct: 3 IILGIDPGSRVTGYGLIKESDRKIAYIDSGCIRTSNDVELSHKLLQIYDGICELMDHYSP 62
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
E A+EQ+F++ + + LKLG AR +A+++ A R + EY+ IK++V+G G +K Q
Sbjct: 63 TEVAIEQIFMHNNPNSALKLGHARGVAMVAAASHRAKICEYSAREIKQSVVGYGAAEKDQ 122
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
+ M+ L+ + KDAADALAIA+CH++ N I S+
Sbjct: 123 VSHMVVELLQLNRAPQKDAADALAIAICHSHMRNGLSKLIGSR 165
>gi|332184197|gb|AEE26451.1| Crossover junction endodeoxyribonuclease RuvC [Francisella cf.
novicida 3523]
Length = 171
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 64/164 (39%), Positives = 104/164 (63%), Gaps = 2/164 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ I+GIDPG R TG+G++ V + + +V+SG I + RL Q+ +G+T +I +
Sbjct: 1 MVILGIDPGSRITGFGVIKVQDNKIYYVASGCIR-ITEITTPRRLKQIADGITQIINIYA 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P EAA+EQ+F+ ++ + +KLGQAR +A+ + A+ + VSEY+ IK+AV+G G K
Sbjct: 60 PTEAAIEQIFMFQNPMGAIKLGQARGVAMCTLAINNLEVSEYSAKQIKQAVVGTGGAAKS 119
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
Q+ M++ L+ S +DAADALAIA+CH + + S +I+
Sbjct: 120 QVQHMVQSLLGLSKKPPEDAADALAIAICHYHSSKS-LARISGA 162
>gi|304413289|ref|ZP_07394762.1| endonuclease subunit of Holliday junction resolvasome [Candidatus
Regiella insecticola LSR1]
gi|304284132|gb|EFL92525.1| endonuclease subunit of Holliday junction resolvasome [Candidatus
Regiella insecticola LSR1]
Length = 176
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 52/132 (39%), Positives = 86/132 (65%), Gaps = 1/132 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ IIGIDPG R TG+G++ + G L +++SG I + L RL +Y G++++I ++
Sbjct: 1 MIIIGIDPGSRITGYGVIALKGRQLSYLASGCIRTGGG-PLPTRLKLIYAGVSEIITQFQ 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ A+EQVF+ K+A + LKLGQAR +AI++ + V EYA +K++V+G G +KK
Sbjct: 60 PDFFAIEQVFMAKNADSALKLGQARGVAIVAAVNQHLTVFEYAARLVKQSVVGSGAAEKK 119
Query: 125 QIHMMLKMLMPE 136
Q+ M++ L+
Sbjct: 120 QVQHMVRCLLNL 131
>gi|126737217|ref|ZP_01752952.1| Holliday junction resolvase [Roseobacter sp. SK209-2-6]
gi|126721802|gb|EBA18505.1| Holliday junction resolvase [Roseobacter sp. SK209-2-6]
Length = 165
Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats.
Identities = 77/161 (47%), Positives = 112/161 (69%), Gaps = 1/161 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPGLR GWG+++ G L V++G S L RL L+ ++++I+ ++
Sbjct: 1 MRILGIDPGLRTLGWGVIESQGSRLSHVANGLCHSD-GDDLGERLLSLHNQVSEIIEAYQ 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P++AA+EQ FVNKD TLKLGQAR +A+L+ A A +P EYAPN +KK V+GVGH +K+
Sbjct: 60 PDQAAIEQTFVNKDGAGTLKLGQARGVALLTLAKAGLPTGEYAPNRVKKTVVGVGHAEKE 119
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
Q+ M+K+ +P KG DAADALAIA+CHAY+ + ++
Sbjct: 120 QVLHMVKLQLPGCDPKGADAADALAIAICHAYYGGTQQRQL 160
>gi|163742242|ref|ZP_02149630.1| Holliday junction resolvase [Phaeobacter gallaeciensis 2.10]
gi|161384572|gb|EDQ08953.1| Holliday junction resolvase [Phaeobacter gallaeciensis 2.10]
Length = 165
Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats.
Identities = 77/161 (47%), Positives = 109/161 (67%), Gaps = 1/161 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPGLR GWG+++ G L V++G + L RL L+ + +VI +R
Sbjct: 1 MRILGIDPGLRNLGWGVIESHGTRLSHVANGVC-TSDGDDLGERLLSLHNQVIEVIAAYR 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P++AA+EQ FVNKD TLKLGQAR +A+++ A A +PV EYAPN +KK V+GVGH K+
Sbjct: 60 PDQAAIEQTFVNKDGAGTLKLGQARGVALMTLAQAGLPVGEYAPNRVKKTVVGVGHAAKE 119
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
QI M+K+ +P K DAADALAIA+CHA++ + ++
Sbjct: 120 QILHMVKLQLPGCLPKNADAADALAIAICHAFYGGTQQRQL 160
>gi|167627793|ref|YP_001678293.1| Holliday junction resolvase [Francisella philomiragia subsp.
philomiragia ATCC 25017]
gi|189046067|sp|B0TZD9|RUVC_FRAP2 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|167597794|gb|ABZ87792.1| Crossover junction endodeoxyribonuclease [Francisella philomiragia
subsp. philomiragia ATCC 25017]
Length = 171
Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats.
Identities = 67/164 (40%), Positives = 105/164 (64%), Gaps = 2/164 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ I+GIDPG R TG+GI+ + + L +V+SG I A RL Q+ +G+T+V+ +
Sbjct: 1 MVILGIDPGSRITGFGIIKIHDNKLYYVASGCIR-ITETGTARRLKQIADGITEVVNTYA 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P E+A+EQ+F+ ++ A LKLGQAR +A+ + A+ + VSEY+ IK+AV+G G K
Sbjct: 60 PTESAIEQIFMFQNPGAALKLGQARGVAMCTLAINNLEVSEYSAKQIKQAVVGTGGAAKS 119
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
Q+ M++ ++ S +DAADALAIA+CH + + S +IA
Sbjct: 120 QVQHMVQSILGLSKKPPEDAADALAIAICHYHSSKS-LARIAGA 162
>gi|238796295|ref|ZP_04639804.1| Crossover junction endodeoxyribonuclease ruvC [Yersinia mollaretii
ATCC 43969]
gi|238719740|gb|EEQ11547.1| Crossover junction endodeoxyribonuclease ruvC [Yersinia mollaretii
ATCC 43969]
Length = 173
Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats.
Identities = 52/136 (38%), Positives = 82/136 (60%), Gaps = 1/136 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G L ++ SG I + V + RL +Y G+T++I ++P
Sbjct: 3 IILGIDPGSRVTGYGVIRQEGRQLTYLGSGCIRTVV-DDMPTRLKLIYAGVTEIITQFQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQVF+ K+ + LKLGQAR AI++ +PVSEYA +K+ V+G G +K Q
Sbjct: 62 DFFAIEQVFMAKNPDSALKLGQARGAAIVAAVNLDLPVSEYAARQVKQTVVGTGAAEKSQ 121
Query: 126 IHMMLKMLMPESFFKG 141
+ M++ L+
Sbjct: 122 VQHMVRSLLKLPANPQ 137
>gi|268608400|ref|ZP_06142127.1| crossover junction endodeoxyribonuclease RuvC [Ruminococcus
flavefaciens FD-1]
Length = 162
Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats.
Identities = 44/140 (31%), Positives = 76/140 (54%), Gaps = 1/140 (0%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M+K IRI+GIDPG G+G++D G + G +++ RL ++E + +
Sbjct: 1 MKK-IRILGIDPGYAIVGFGVLDYDGVRFTPIEYGAVLTEAGTPFPERLRAIHEDIEFIF 59
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
+ +RP+ AVE+++ + + + QAR I +LS A +PVSEY P +K +V G G
Sbjct: 60 EKFRPDCMAVERLYFTTNQKTAIDVAQARGITVLSAAKRNVPVSEYTPLQVKLSVTGYGK 119
Query: 121 GDKKQIHMMLKMLMPESFFK 140
+K+Q+ M + L+ +
Sbjct: 120 AEKRQVMEMTRQLLGLAQIP 139
>gi|224373800|ref|YP_002608172.1| Holliday junction resolvase [Nautilia profundicola AmH]
gi|254767480|sp|B9L734|RUVC_NAUPA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|223589637|gb|ACM93373.1| crossover junction endodeoxyribonuclease RuvC [Nautilia
profundicola AmH]
Length = 154
Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats.
Identities = 47/154 (30%), Positives = 77/154 (50%), Gaps = 4/154 (2%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
++I+GIDPG + G+ I++ L + +G I + L ++L QL EG+ + +
Sbjct: 1 MKILGIDPGTIKCGYAIIE-TKPKLTLIDAGFIK-ITEKELQYQLSQLIEGIDMIYDS-S 57
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
+E A+E +F + LKL Q R L SEY P +K+AV G G K+
Sbjct: 58 IDEVAIEDIFFAYNPKTVLKLAQFRGALSLRILQIHGNFSEYTPLQVKRAVTGNGKAKKE 117
Query: 125 QIHMMLKMLMPES-FFKGKDAADALAIAVCHAYH 157
Q+ M+K ++ K D DA+A+A+ H+
Sbjct: 118 QVAFMVKRILGIKGDIKPLDITDAIAVAITHSQR 151
>gi|300904747|ref|ZP_07122577.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
84-1]
gi|301304452|ref|ZP_07210564.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
124-1]
gi|300403331|gb|EFJ86869.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
84-1]
gi|300840303|gb|EFK68063.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
124-1]
gi|315257305|gb|EFU37273.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli MS
85-1]
Length = 173
Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats.
Identities = 52/136 (38%), Positives = 83/136 (61%), Gaps = 1/136 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G L ++ SG I + L RL +Y G+T++I ++P
Sbjct: 3 IILGIDPGSRVTGYGVICQVGRQLSYLGSGCIRT-KVDDLPSRLKLIYAGVTEIITQFQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQVF+ K+A + LKLGQAR +AI++ +PV EYA +K+ V+G+G +K Q
Sbjct: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121
Query: 126 IHMMLKMLMPESFFKG 141
+ M++ L+
Sbjct: 122 VQHMVRTLLKLPANPQ 137
>gi|37526026|ref|NP_929370.1| Holliday junction resolvase [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|44888381|sp|Q7N549|RUVC_PHOLL RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|36785456|emb|CAE14403.1| crossover junction endodeoxyribonuclease (Holliday junction
nuclease RuvC) (Holliday junction resolvase RuvC)
[Photorhabdus luminescens subsp. laumondii TTO1]
Length = 173
Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats.
Identities = 53/136 (38%), Positives = 84/136 (61%), Gaps = 1/136 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G +L ++ SG I + L RL ++Y G+ ++I ++P
Sbjct: 3 IILGIDPGSRVTGYGVIRQQGRHLSYLGSGCIRT-KVDDLPNRLQRIYAGILEIITQFQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQVF+ K+A + LKLGQAR +AIL+ IPV EYA +K+ V+G G +K Q
Sbjct: 62 DAFAIEQVFMAKNADSALKLGQARGVAILAAVNQSIPVFEYAARQVKQTVVGTGAAEKSQ 121
Query: 126 IHMMLKMLMPESFFKG 141
+ M++ ++ S
Sbjct: 122 VQHMVRSVLKLSANPQ 137
>gi|157156383|ref|YP_001463166.1| Holliday junction resolvase [Escherichia coli E24377A]
gi|167012678|sp|A7ZMY7|RUVC_ECO24 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|157078413|gb|ABV18121.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
E24377A]
Length = 173
Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats.
Identities = 51/136 (37%), Positives = 83/136 (61%), Gaps = 1/136 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G L ++ SG I + L RL +Y G+T++I ++P
Sbjct: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRT-KVDDLPSRLKLIYAGVTEIITQFQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQVF+ K+A + LKLGQAR +AI++ +PV EYA +K+ V+G+G +K Q
Sbjct: 62 DFFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121
Query: 126 IHMMLKMLMPESFFKG 141
+ M++ ++
Sbjct: 122 VQHMVRTMLKLPANPQ 137
>gi|295695625|ref|YP_003588863.1| crossover junction endodeoxyribonuclease RuvC [Bacillus tusciae DSM
2912]
gi|295411227|gb|ADG05719.1| crossover junction endodeoxyribonuclease RuvC [Bacillus tusciae DSM
2912]
Length = 179
Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats.
Identities = 44/138 (31%), Positives = 77/138 (55%), Gaps = 1/138 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+R++GIDPG+ R G+G+V G+ L G + + + RL ++YE + ++++N
Sbjct: 1 MRVLGIDPGIGRMGYGLVRSQGNRLRTEDYGCVETRPG-PIGERLVRIYEKMQELLQNLN 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ AVEQ+F ++ +GQAR + +L+ A + V+EY P +K+AV G G +K
Sbjct: 60 PDVVAVEQLFFYRNVTTAFHVGQARGVVLLAARQAEVAVAEYTPMQVKQAVTGYGSAEKG 119
Query: 125 QIHMMLKMLMPESFFKGK 142
Q+ M+ ML+
Sbjct: 120 QVQRMVAMLLGLPAPPRP 137
>gi|269216144|ref|ZP_06159998.1| crossover junction endodeoxyribonuclease RuvC [Slackia exigua ATCC
700122]
gi|269130403|gb|EEZ61481.1| crossover junction endodeoxyribonuclease RuvC [Slackia exigua ATCC
700122]
Length = 183
Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats.
Identities = 45/137 (32%), Positives = 72/137 (52%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
I+GIDPGL TGWGIV G L ++ G I + L+ RL ++Y+ + +++ + P
Sbjct: 21 ILGIDPGLANTGWGIVRQTGGRLACLAYGCISTSPNTDLSQRLRKIYDQMALIVQRYEPN 80
Query: 67 EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
+E V+ + + GQAR A+ + A V E++P+ IKKAV G G +K Q+
Sbjct: 81 CLGIETVWFGANVQSAFATGQARGAALAAVARFDAKVGEFSPSQIKKAVTGEGSAEKDQV 140
Query: 127 HMMLKMLMPESFFKGKD 143
M++ L+ D
Sbjct: 141 EYMVQQLLSLPEPPRPD 157
>gi|114704963|ref|ZP_01437871.1| Holliday junction resolvase [Fulvimarina pelagi HTCC2506]
gi|114539748|gb|EAU42868.1| Holliday junction resolvase [Fulvimarina pelagi HTCC2506]
Length = 172
Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats.
Identities = 109/165 (66%), Positives = 134/165 (81%)
Query: 2 RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
IRIIGIDPGLRRTGWGIV+ G++L FVSSGT+ S + LA RL QL++GL+++I
Sbjct: 4 ETPIRIIGIDPGLRRTGWGIVETQGNSLRFVSSGTVTSDPKCDLASRLRQLHDGLSEIIH 63
Query: 62 NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
+ RP+EAAVEQ FVNKDAVATLKLGQAR IA+L P+LA IPV+EYAPN +KKAVIGVGHG
Sbjct: 64 SHRPDEAAVEQTFVNKDAVATLKLGQARGIALLVPSLAGIPVAEYAPNAVKKAVIGVGHG 123
Query: 122 DKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
DKKQIHMM+ +LMP++ F DAADA+AIA+CH +H S ++A
Sbjct: 124 DKKQIHMMVNVLMPKATFDTDDAADAIAIAICHTHHRQSAQSRLA 168
>gi|22126140|ref|NP_669563.1| Holliday junction resolvase [Yersinia pestis KIM 10]
gi|45441701|ref|NP_993240.1| Holliday junction resolvase [Yersinia pestis biovar Microtus str.
91001]
gi|51596365|ref|YP_070556.1| Holliday junction resolvase [Yersinia pseudotuberculosis IP 32953]
gi|108807434|ref|YP_651350.1| Holliday junction resolvase [Yersinia pestis Antiqua]
gi|108811696|ref|YP_647463.1| Holliday junction resolvase [Yersinia pestis Nepal516]
gi|145598361|ref|YP_001162437.1| Holliday junction resolvase [Yersinia pestis Pestoides F]
gi|149366015|ref|ZP_01888050.1| crossover junction endodeoxyribonuclease [Yersinia pestis
CA88-4125]
gi|153949084|ref|YP_001401005.1| Holliday junction resolvase [Yersinia pseudotuberculosis IP 31758]
gi|162418674|ref|YP_001606845.1| Holliday junction resolvase [Yersinia pestis Angola]
gi|165926386|ref|ZP_02222218.1| crossover junction endodeoxyribonuclease RuvC [Yersinia pestis
biovar Orientalis str. F1991016]
gi|165938887|ref|ZP_02227441.1| crossover junction endodeoxyribonuclease RuvC [Yersinia pestis
biovar Orientalis str. IP275]
gi|166009096|ref|ZP_02229994.1| crossover junction endodeoxyribonuclease RuvC [Yersinia pestis
biovar Antiqua str. E1979001]
gi|166210551|ref|ZP_02236586.1| crossover junction endodeoxyribonuclease RuvC [Yersinia pestis
biovar Antiqua str. B42003004]
gi|167401485|ref|ZP_02306982.1| crossover junction endodeoxyribonuclease RuvC [Yersinia pestis
biovar Antiqua str. UG05-0454]
gi|167420351|ref|ZP_02312104.1| crossover junction endodeoxyribonuclease RuvC [Yersinia pestis
biovar Orientalis str. MG05-1020]
gi|167424499|ref|ZP_02316252.1| crossover junction endodeoxyribonuclease RuvC [Yersinia pestis
biovar Mediaevalis str. K1973002]
gi|167470864|ref|ZP_02335568.1| crossover junction endodeoxyribonuclease RuvC [Yersinia pestis
FV-1]
gi|170024379|ref|YP_001720884.1| Holliday junction resolvase [Yersinia pseudotuberculosis YPIII]
gi|186895406|ref|YP_001872518.1| Holliday junction resolvase [Yersinia pseudotuberculosis PB1/+]
gi|218929163|ref|YP_002347038.1| Holliday junction resolvase [Yersinia pestis CO92]
gi|229894770|ref|ZP_04509950.1| component of RuvABC resolvasome, endonuclease [Yersinia pestis
Pestoides A]
gi|229897472|ref|ZP_04512628.1| component of RuvABC resolvasome, endonuclease [Yersinia pestis
biovar Orientalis str. PEXU2]
gi|229898119|ref|ZP_04513268.1| component of RuvABC resolvasome, endonuclease [Yersinia pestis
biovar Orientalis str. India 195]
gi|229901978|ref|ZP_04517099.1| component of RuvABC resolvasome, endonuclease [Yersinia pestis
Nepal516]
gi|270490838|ref|ZP_06207912.1| crossover junction endodeoxyribonuclease RuvC [Yersinia pestis KIM
D27]
gi|294503878|ref|YP_003567940.1| Holliday junction resolvase [Yersinia pestis Z176003]
gi|20978748|sp|Q8ZEU7|RUVC_YERPE RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|81639433|sp|Q66AU1|RUVC_YERPS RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|123372470|sp|Q1C817|RUVC_YERPA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|123373280|sp|Q1CJG7|RUVC_YERPN RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|166233312|sp|A4TJK2|RUVC_YERPP RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|167012684|sp|A7FIC7|RUVC_YERP3 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|226698770|sp|A9QYX5|RUVC_YERPG RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|238688452|sp|B1JLL2|RUVC_YERPY RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|238691370|sp|B2K322|RUVC_YERPB RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|21959101|gb|AAM85814.1|AE013828_5 Holliday junction nuclease [Yersinia pestis KIM 10]
gi|45436563|gb|AAS62117.1| crossover junction endodeoxyribonuclease [Yersinia pestis biovar
Microtus str. 91001]
gi|51589647|emb|CAH21277.1| crossover junction endodeoxyribonuclease [Yersinia
pseudotuberculosis IP 32953]
gi|108775344|gb|ABG17863.1| Holliday junction endonuclease RuvC [Yersinia pestis Nepal516]
gi|108779347|gb|ABG13405.1| Holliday junction endonuclease RuvC [Yersinia pestis Antiqua]
gi|115347774|emb|CAL20691.1| crossover junction endodeoxyribonuclease [Yersinia pestis CO92]
gi|145210057|gb|ABP39464.1| Holliday junction endonuclease RuvC [Yersinia pestis Pestoides F]
gi|149292428|gb|EDM42502.1| crossover junction endodeoxyribonuclease [Yersinia pestis
CA88-4125]
gi|152960579|gb|ABS48040.1| crossover junction endodeoxyribonuclease RuvC [Yersinia
pseudotuberculosis IP 31758]
gi|162351489|gb|ABX85437.1| crossover junction endodeoxyribonuclease RuvC [Yersinia pestis
Angola]
gi|165913250|gb|EDR31873.1| crossover junction endodeoxyribonuclease RuvC [Yersinia pestis
biovar Orientalis str. IP275]
gi|165921607|gb|EDR38804.1| crossover junction endodeoxyribonuclease RuvC [Yersinia pestis
biovar Orientalis str. F1991016]
gi|165991651|gb|EDR43952.1| crossover junction endodeoxyribonuclease RuvC [Yersinia pestis
biovar Antiqua str. E1979001]
gi|166207731|gb|EDR52211.1| crossover junction endodeoxyribonuclease RuvC [Yersinia pestis
biovar Antiqua str. B42003004]
gi|166962046|gb|EDR58067.1| crossover junction endodeoxyribonuclease RuvC [Yersinia pestis
biovar Orientalis str. MG05-1020]
gi|167049181|gb|EDR60589.1| crossover junction endodeoxyribonuclease RuvC [Yersinia pestis
biovar Antiqua str. UG05-0454]
gi|167056381|gb|EDR66150.1| crossover junction endodeoxyribonuclease RuvC [Yersinia pestis
biovar Mediaevalis str. K1973002]
gi|169750913|gb|ACA68431.1| crossover junction endodeoxyribonuclease RuvC [Yersinia
pseudotuberculosis YPIII]
gi|186698432|gb|ACC89061.1| crossover junction endodeoxyribonuclease RuvC [Yersinia
pseudotuberculosis PB1/+]
gi|229680874|gb|EEO76969.1| component of RuvABC resolvasome, endonuclease [Yersinia pestis
Nepal516]
gi|229688835|gb|EEO80902.1| component of RuvABC resolvasome, endonuclease [Yersinia pestis
biovar Orientalis str. India 195]
gi|229693809|gb|EEO83858.1| component of RuvABC resolvasome, endonuclease [Yersinia pestis
biovar Orientalis str. PEXU2]
gi|229702243|gb|EEO90262.1| component of RuvABC resolvasome, endonuclease [Yersinia pestis
Pestoides A]
gi|262362003|gb|ACY58724.1| Holliday junction resolvase [Yersinia pestis D106004]
gi|262365860|gb|ACY62417.1| Holliday junction resolvase [Yersinia pestis D182038]
gi|270339342|gb|EFA50119.1| crossover junction endodeoxyribonuclease RuvC [Yersinia pestis KIM
D27]
gi|294354337|gb|ADE64678.1| Holliday junction resolvase [Yersinia pestis Z176003]
gi|320015266|gb|ADV98837.1| component of RuvABC resolvasome, endonuclease [Yersinia pestis
biovar Medievalis str. Harbin 35]
Length = 173
Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats.
Identities = 51/136 (37%), Positives = 82/136 (60%), Gaps = 1/136 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
++GIDPG R TG+G++ G L ++ SG I + V + RL +Y G+T++I ++P
Sbjct: 3 IVLGIDPGSRVTGYGVIRQQGRQLTYLGSGCIRTVV-DDMPTRLKLIYAGVTEIITQFQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQVF+ K+ + LKLGQAR AI++ +PVSEYA +K+ V+G G +K Q
Sbjct: 62 DFFAIEQVFMAKNPDSALKLGQARGAAIVAAVNLNLPVSEYAARQVKQTVVGTGAAEKSQ 121
Query: 126 IHMMLKMLMPESFFKG 141
+ M++ L+
Sbjct: 122 VQHMVRSLLKLPANPQ 137
>gi|153008542|ref|YP_001369757.1| Holliday junction resolvase [Ochrobactrum anthropi ATCC 49188]
gi|166233276|sp|A6WY74|RUVC_OCHA4 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|151560430|gb|ABS13928.1| crossover junction endodeoxyribonuclease RuvC [Ochrobactrum
anthropi ATCC 49188]
Length = 172
Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats.
Identities = 106/160 (66%), Positives = 130/160 (81%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M+++IRIIGIDPGLRRTGWGIV+ G++L F+ SGT+ S LA RLCQL+EGL+ V+
Sbjct: 1 MKETIRIIGIDPGLRRTGWGIVESLGNSLHFIGSGTVTSNAEMDLASRLCQLHEGLSKVL 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
+ P EAAVE FVNKDA ATLKLGQAR IA+L+PA A +PV+EYAPN +KKAVIGVGH
Sbjct: 61 HEYMPHEAAVEHTFVNKDATATLKLGQARGIALLAPAQAGLPVAEYAPNAVKKAVIGVGH 120
Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
G+K+QIHMM+K+LMP + F DAADALAIA+CHA+H S
Sbjct: 121 GEKQQIHMMVKVLMPRASFDTSDAADALAIAICHAHHRQS 160
>gi|189183830|ref|YP_001937615.1| Holliday junction resolvase [Orientia tsutsugamushi str. Ikeda]
gi|238692244|sp|B3CSI0|RUVC_ORITI RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|189180601|dbj|BAG40381.1| holliday junction endodeoxyribonuclease RuvC [Orientia
tsutsugamushi str. Ikeda]
Length = 159
Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats.
Identities = 55/149 (36%), Positives = 86/149 (57%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ I+GIDP L TGWG++ ++G + ++ SG I + + SL +L + + +I +
Sbjct: 1 MIILGIDPSLVSTGWGVISISGSIVNYIDSGVIKTVSKDSLVLKLGNISLMIEKLITRFN 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P A+E+VF+NK+ +++ L QAR + I SEYAPN IKKA++G G +K
Sbjct: 61 PFHVAMEEVFINKNYSSSVTLIQARGAIMSVIGRYNIDFSEYAPNKIKKAIVGAGKAEKH 120
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVC 153
Q+ M+K+LM KD +DALA A
Sbjct: 121 QVQQMVKLLMHIKKAISKDESDALATAYT 149
>gi|54113895|gb|AAV29581.1| NT02FT1045 [synthetic construct]
Length = 178
Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats.
Identities = 65/164 (39%), Positives = 104/164 (63%), Gaps = 2/164 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ I+GIDPG R TG+G++ V + + +V+SG I + RL Q+ +G+T +I +
Sbjct: 8 MVILGIDPGSRITGFGVIKVQDNKIYYVASGCIR-ITEITTPKRLKQIADGITQIINIYA 66
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P EAA+EQ+F+ ++ + +KLGQAR +A+ + A+ + VSEY+ IK+AV+G G K
Sbjct: 67 PTEAAIEQIFMFQNPMGAIKLGQARGVAMCTLAINNLEVSEYSAKQIKQAVVGTGGAAKS 126
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
Q+ M++ L+ S +DAADALAIA+CH + + S KI+
Sbjct: 127 QVQHMVQSLLGLSKKPPEDAADALAIAICHYHSSKS-LAKISGA 169
>gi|253989950|ref|YP_003041306.1| Holliday junction resolvase [Photorhabdus asymbiotica subsp.
asymbiotica ATCC 43949]
gi|211639069|emb|CAR67682.1| crossover junction endodeoxyribonuclease ruvc (ec 3.1.22.4)
(hollida junction nuclease ruvc) (holliday junction
resolvase ruvc) [Photorhabdus asymbiotica subsp.
asymbiotica ATCC 43949]
gi|253781400|emb|CAQ84563.1| crossover junction endodeoxyribonuclease RuvC [Photorhabdus
asymbiotica]
Length = 173
Score = 145 bits (367), Expect = 1e-33, Method: Composition-based stats.
Identities = 52/136 (38%), Positives = 84/136 (61%), Gaps = 1/136 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
++GIDPG R TG+G++ G +L ++ SG I + L RL ++Y G+T++I ++P
Sbjct: 3 IVLGIDPGSRVTGYGVIRQQGRHLIYLGSGCIRT-KVDDLPSRLQRIYAGITEIITQFQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQVF+ K+ + LKLGQAR +AIL+ +PV EYA +K+ V+G G +K Q
Sbjct: 62 DAFAIEQVFMAKNPDSALKLGQARGVAILAAVNQSVPVFEYAARQVKQTVVGTGAAEKSQ 121
Query: 126 IHMMLKMLMPESFFKG 141
I M++ ++ S
Sbjct: 122 IQHMVRSMLKLSANPQ 137
>gi|197284985|ref|YP_002150857.1| Holliday junction resolvase [Proteus mirabilis HI4320]
gi|227355389|ref|ZP_03839790.1| Holliday junction nuclease [Proteus mirabilis ATCC 29906]
gi|238693145|sp|B4ETP6|RUVC_PROMH RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|194682472|emb|CAR42405.1| Holliday junction nuclease [Proteus mirabilis HI4320]
gi|227164613|gb|EEI49484.1| Holliday junction nuclease [Proteus mirabilis ATCC 29906]
Length = 173
Score = 145 bits (367), Expect = 1e-33, Method: Composition-based stats.
Identities = 54/132 (40%), Positives = 85/132 (64%), Gaps = 1/132 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G L ++ SG I + V L RL ++Y G++++I + P
Sbjct: 3 IILGIDPGSRVTGYGVIRQQGRQLIYLGSGCIRTQVP-DLPSRLKRIYAGVSEIITQFSP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ +VEQVF+ K+A + LKLGQAR +AIL+ +PV EYA +K++V+G G DK Q
Sbjct: 62 DVFSVEQVFMAKNADSALKLGQARGVAILAAVNNDLPVFEYAARQVKQSVVGTGGADKSQ 121
Query: 126 IHMMLKMLMPES 137
+ M++ ++ S
Sbjct: 122 VQHMVRSILKLS 133
>gi|330445531|ref|ZP_08309183.1| crossover junction endodeoxyribonuclease RuvC [Photobacterium
leiognathi subsp. mandapamensis svers.1.1.]
gi|328489722|dbj|GAA03680.1| crossover junction endodeoxyribonuclease RuvC [Photobacterium
leiognathi subsp. mandapamensis svers.1.1.]
Length = 173
Score = 145 bits (367), Expect = 1e-33, Method: Composition-based stats.
Identities = 66/163 (40%), Positives = 103/163 (63%), Gaps = 2/163 (1%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G L ++ SG I + + RL Q+Y G+++VI ++P
Sbjct: 3 IILGIDPGSRITGYGVIRQVGRKLEYLGSGCIRTS-EPDIPGRLKQIYAGVSEVITQFQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+E+VF+ K+A + +KLGQAR AI++ A +PVSEYA IK+AV+G G DK Q
Sbjct: 62 DCFAIEEVFMGKNASSAIKLGQARGSAIVAAVNADLPVSEYAARLIKQAVVGTGGADKAQ 121
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
+ M+ ++ + DAADALA+A+CHA+ + +A +
Sbjct: 122 VQHMVCSVLKLAGKPQADAADALAVAICHAHTHKT-LVAMAGK 163
>gi|62263337|gb|AAX78153.1| unknown protein [synthetic construct]
Length = 213
Score = 145 bits (367), Expect = 1e-33, Method: Composition-based stats.
Identities = 65/164 (39%), Positives = 104/164 (63%), Gaps = 2/164 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ I+GIDPG R TG+G++ V + + +V+SG I + RL Q+ +G+T +I +
Sbjct: 34 MVILGIDPGSRITGFGVIKVQDNKIYYVASGCIR-ITEITTPKRLKQIADGITQIINIYA 92
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P EAA+EQ+F+ ++ + +KLGQAR +A+ + A+ + VSEY+ IK+AV+G G K
Sbjct: 93 PTEAAIEQIFMFQNPMGAIKLGQARGVAMCTLAINNLEVSEYSAKQIKQAVVGTGGAAKS 152
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
Q+ M++ L+ S +DAADALAIA+CH + + S KI+
Sbjct: 153 QVQHMVQSLLGLSKKPPEDAADALAIAICHYHSSKS-LAKISGA 195
>gi|224437106|ref|ZP_03658087.1| Holliday junction resolvase [Helicobacter cinaedi CCUG 18818]
Length = 170
Score = 145 bits (367), Expect = 1e-33, Method: Composition-based stats.
Identities = 50/162 (30%), Positives = 79/162 (48%), Gaps = 8/162 (4%)
Query: 5 IRIIGIDPGLRRTGWGIVDVA------GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTD 58
+ I+GIDPG R G+ I+ +A +L + +G I +SL ++ + EG+
Sbjct: 1 MYILGIDPGSRNCGYAIIQMADANMHLKGSLKLIEAGIIK-IKERSLQHQIVEFVEGIDM 59
Query: 59 VIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGV 118
V+K +E A+E +F + + +KL Q R L +EY P +KKA+ G
Sbjct: 60 VLKLHHIDEVAIEDIFFAYNPKSVIKLAQFRGALSLKILQEIGNFAEYTPLQVKKAITGN 119
Query: 119 GHGDKKQIHMMLKMLMPES-FFKGKDAADALAIAVCHAYHAN 159
G DK Q+ M+K ++ K D DALAIA+ H+
Sbjct: 120 GKADKAQVAFMVKKILGIKGEIKPLDITDALAIAITHSQRVG 161
>gi|238786429|ref|ZP_04630349.1| Crossover junction endodeoxyribonuclease ruvC [Yersinia bercovieri
ATCC 43970]
gi|238712663|gb|EEQ04755.1| Crossover junction endodeoxyribonuclease ruvC [Yersinia bercovieri
ATCC 43970]
Length = 173
Score = 145 bits (367), Expect = 1e-33, Method: Composition-based stats.
Identities = 51/136 (37%), Positives = 82/136 (60%), Gaps = 1/136 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
++GIDPG R TG+G++ G L ++ SG I + V + RL +Y G+T++I ++P
Sbjct: 3 IVLGIDPGSRVTGYGVIRQEGRQLTYLGSGCIRTVV-DDMPTRLKLIYAGVTEIITQFQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQVF+ K+ + LKLGQAR AI++ +PVSEYA +K+ V+G G +K Q
Sbjct: 62 DFFAIEQVFMAKNPDSALKLGQARGAAIVAAVNLNLPVSEYAARQVKQTVVGTGAAEKSQ 121
Query: 126 IHMMLKMLMPESFFKG 141
+ M++ L+
Sbjct: 122 VQHMVRSLLKLPANPQ 137
>gi|299134169|ref|ZP_07027362.1| crossover junction endodeoxyribonuclease RuvC [Afipia sp. 1NLS2]
gi|298590916|gb|EFI51118.1| crossover junction endodeoxyribonuclease RuvC [Afipia sp. 1NLS2]
Length = 171
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 89/169 (52%), Positives = 118/169 (69%), Gaps = 2/169 (1%)
Query: 2 RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
++IRI+GIDPGLRRTGWG++DV G+ L +V G++ S L+ RL ++EGL V+
Sbjct: 3 SRAIRILGIDPGLRRTGWGVIDVDGNRLIYVGCGSVESRESLPLSERLLAIHEGLLKVMS 62
Query: 62 NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
P EAA+EQ FVNKD TLKLGQAR +A+L PA++ I V+EYAPN +KK V+G GH
Sbjct: 63 EHGPMEAAIEQTFVNKDGAGTLKLGQARGVAMLVPAMSGISVAEYAPNQVKKTVVGAGHA 122
Query: 122 DKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSG--YYKIASQ 168
DK QI +ML +L+P++ DAADALAIA+ HA+H S K+AS
Sbjct: 123 DKNQIRVMLGVLLPKAQPATPDAADALAIAITHAHHRQSVALMRKVASA 171
>gi|259417391|ref|ZP_05741310.1| crossover junction endodeoxyribonuclease RuvC [Silicibacter sp.
TrichCH4B]
gi|259346297|gb|EEW58111.1| crossover junction endodeoxyribonuclease RuvC [Silicibacter sp.
TrichCH4B]
Length = 188
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 78/163 (47%), Positives = 111/163 (68%), Gaps = 1/163 (0%)
Query: 3 KSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
+RI+GIDPGLR GWG+++ G L V++G S L RL L+ +T++I
Sbjct: 22 SEMRILGIDPGLRTLGWGVIESNGARLSHVANGLCHSD-GDDLGERLLSLHNQVTEIIDA 80
Query: 63 WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
++P++AA+EQ FVNKD TLKLGQAR +A+L+ A A +P EYAPN +KK V+GVGH +
Sbjct: 81 YQPDQAAIEQTFVNKDGAGTLKLGQARGVALLTLAKAGLPTGEYAPNRVKKTVVGVGHAE 140
Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
K+Q+ M+K+ +P +G DAADALAIA+CHAY+ S ++
Sbjct: 141 KEQVLHMVKLQLPGCAPRGADAADALAIAICHAYYGGSNQRRL 183
>gi|242280347|ref|YP_002992476.1| Holliday junction resolvase [Desulfovibrio salexigens DSM 2638]
gi|242123241|gb|ACS80937.1| crossover junction endodeoxyribonuclease RuvC [Desulfovibrio
salexigens DSM 2638]
Length = 168
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 56/159 (35%), Positives = 90/159 (56%), Gaps = 3/159 (1%)
Query: 11 DPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAV 70
DPG R TG+GIV + V +GTI + ++ + RL ++Y + ++IK + P+EAA+
Sbjct: 12 DPGTRVTGYGIVRELSGQVSLVDAGTIRTNTKKPMCSRLGEIYSRIAELIKEYSPDEAAI 71
Query: 71 EQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMML 130
E FV + + LKLGQAR A+ + A++ + VS Y P +K ++G G DK Q+ M+
Sbjct: 72 ENAFVASNPASALKLGQARGAAMAACAVSGLVVSGYEPTKVKSNLVGSGRADKSQVAFMV 131
Query: 131 KMLMPESFFK-GKDAADALAIAVCHAYHANSGYYKIASQ 168
+ ++ K D DAL IA+CH + K+A +
Sbjct: 132 ERILGVKNTKWANDTTDALGIAICHLNERR--FAKVAGR 168
>gi|118497618|ref|YP_898668.1| holliday junction endodeoxyribonuclease [Francisella tularensis
subsp. novicida U112]
gi|134302040|ref|YP_001122009.1| Holliday junction resolvase [Francisella tularensis subsp.
tularensis WY96-3418]
gi|187931871|ref|YP_001891856.1| Holliday junction resolvase [Francisella tularensis subsp.
mediasiatica FSC147]
gi|195536319|ref|ZP_03079326.1| crossover junction endodeoxyribonuclease RuvC [Francisella
tularensis subsp. novicida FTE]
gi|224456849|ref|ZP_03665322.1| Holliday junction resolvase [Francisella tularensis subsp.
tularensis MA00-2987]
gi|254374433|ref|ZP_04989915.1| hypothetical protein FTDG_00602 [Francisella novicida GA99-3548]
gi|110287673|sp|Q5NH18|RUVC_FRATT RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|166233193|sp|A0Q6P9|RUVC_FRATN RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|166233194|sp|A4IY87|RUVC_FRATW RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|187611415|sp|Q14IH0|RUVC_FRAT1 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|238691572|sp|B2SH69|RUVC_FRATM RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|118423524|gb|ABK89914.1| holliday junction endodeoxyribonuclease [Francisella novicida U112]
gi|134049817|gb|ABO46888.1| crossover junction endodeoxyribonuclease RuvC [Francisella
tularensis subsp. tularensis WY96-3418]
gi|151572153|gb|EDN37807.1| hypothetical protein FTDG_00602 [Francisella novicida GA99-3548]
gi|187712780|gb|ACD31077.1| crossover junction endodeoxyribonuclease RuvC [Francisella
tularensis subsp. mediasiatica FSC147]
gi|194372796|gb|EDX27507.1| crossover junction endodeoxyribonuclease RuvC [Francisella
tularensis subsp. novicida FTE]
gi|332678323|gb|AEE87452.1| Crossover junction endodeoxyribonuclease RuvC [Francisella cf.
novicida Fx1]
Length = 171
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 65/164 (39%), Positives = 104/164 (63%), Gaps = 2/164 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ I+GIDPG R TG+G++ V + + +V+SG I + RL Q+ +G+T +I +
Sbjct: 1 MVILGIDPGSRITGFGVIKVQDNKIYYVASGCIR-ITEITTPKRLKQIADGITQIINIYA 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P EAA+EQ+F+ ++ + +KLGQAR +A+ + A+ + VSEY+ IK+AV+G G K
Sbjct: 60 PTEAAIEQIFMFQNPMGAIKLGQARGVAMCTLAINNLEVSEYSAKQIKQAVVGTGGAAKS 119
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
Q+ M++ L+ S +DAADALAIA+CH + + S KI+
Sbjct: 120 QVQHMVQSLLGLSKKPPEDAADALAIAICHYHSSKS-LAKISGA 162
>gi|239617282|ref|YP_002940604.1| crossover junction endodeoxyribonuclease RuvC [Kosmotoga olearia
TBF 19.5.1]
gi|239506113|gb|ACR79600.1| crossover junction endodeoxyribonuclease RuvC [Kosmotoga olearia
TBF 19.5.1]
Length = 168
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 47/143 (32%), Positives = 85/143 (59%), Gaps = 2/143 (1%)
Query: 1 MRKS-IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDV 59
M KS RI+GIDPG G+G++DV+G + V G I + + + RL ++Y+ L ++
Sbjct: 1 MAKSCTRILGIDPGFGTLGYGLIDVSGSKVSLVGYGVIQTKPGEPIPNRLLKIYDRLHEI 60
Query: 60 IKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVG 119
++ +RP+EAA+E++F ++ +++G+AR + +L IP+ EY P+ +K++V G G
Sbjct: 61 VEEYRPDEAAIEELFFFRNVTTAIQVGEARGVVLLVLKQLSIPIFEYTPHQVKQSVTGYG 120
Query: 120 HGDKKQIHMMLKMLMP-ESFFKG 141
+K QI ++K + K
Sbjct: 121 RSEKGQIQRVMKKFLGMNETPKP 143
>gi|88861320|ref|ZP_01135951.1| Holliday junction nuclease [Pseudoalteromonas tunicata D2]
gi|88816699|gb|EAR26523.1| Holliday junction nuclease [Pseudoalteromonas tunicata D2]
Length = 173
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 66/163 (40%), Positives = 100/163 (61%), Gaps = 2/163 (1%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ + G ++ SG I + LA RL ++ G++ +I+ ++P
Sbjct: 3 IILGIDPGSRLTGYGVISMQGSKYSYLGSGCIRL-GDKPLAERLKMIFLGVSQIIEQYQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
A+EQVF+ + + LKLGQAR AI++ +A + V EY+ +K+AV+G G DKKQ
Sbjct: 62 TAFAIEQVFMAHNPDSALKLGQARGAAIVAATMADLLVCEYSARQVKQAVVGNGGADKKQ 121
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
+ M+K L+ DAADALAIA+CH + S K+A Q
Sbjct: 122 VQHMVKTLLTLPSMPQADAADALAIAMCHGHSQQS-LIKLAGQ 163
>gi|189424312|ref|YP_001951489.1| Holliday junction resolvase [Geobacter lovleyi SZ]
gi|238692134|sp|B3E789|RUVC_GEOLS RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|189420571|gb|ACD94969.1| crossover junction endodeoxyribonuclease RuvC [Geobacter lovleyi
SZ]
Length = 178
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 60/158 (37%), Positives = 94/158 (59%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+R++GIDPG R TG+G+V+ G L + +G + + + RL ++EGL+ VI +
Sbjct: 1 MRVLGIDPGSRITGYGLVEQHGSRLVHLDNGAVFTDKAKDFPDRLRLIFEGLSRVIAEYA 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ AVE V+V+++ A LKLGQAR AI + A +PV EY + +K+AV+G G K+
Sbjct: 61 PDAVAVEDVYVSENVRAALKLGQARGAAIAAAVHAGLPVFEYTASQVKQAVVGQGRAGKE 120
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGY 162
Q+ M+K L+ DA+DA+A+A+CH
Sbjct: 121 QVQKMVKALLGLPEIAQADASDAVAVAICHINSYQLRL 158
>gi|188580170|ref|YP_001923615.1| Holliday junction resolvase [Methylobacterium populi BJ001]
gi|238692870|sp|B1Z922|RUVC_METPB RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|179343668|gb|ACB79080.1| crossover junction endodeoxyribonuclease RuvC [Methylobacterium
populi BJ001]
Length = 189
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 75/140 (53%), Positives = 99/140 (70%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M +RI+GIDPGLRRTGWG++ G L +++ G + S LA RL +L+EGLT V+
Sbjct: 1 MTTDVRILGIDPGLRRTGWGLITARGTKLSYLACGVVTSDGDLPLALRLRELHEGLTRVL 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
P+E +VE+ FVNKDA ATLKLG ARA+A+L PALA +PV+EYA N +KK V G GH
Sbjct: 61 TTHAPDEVSVEETFVNKDAQATLKLGHARAVALLVPALAGLPVAEYAANLVKKTVAGNGH 120
Query: 121 GDKKQIHMMLKMLMPESFFK 140
+K QI M+K L+P++ FK
Sbjct: 121 AEKVQIQAMVKFLLPKAEFK 140
>gi|222149651|ref|YP_002550608.1| Holliday junction resolvase [Agrobacterium vitis S4]
gi|254767454|sp|B9JRI5|RUVC_AGRVS RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|221736633|gb|ACM37596.1| Holliday Junction Resolvase RuvC [Agrobacterium vitis S4]
Length = 169
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 108/166 (65%), Positives = 136/166 (81%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M +IRIIGIDPGLRRTGWG+++ G++L F++SGT++S LA RLCQL++GL DV+
Sbjct: 1 MTSAIRIIGIDPGLRRTGWGVIETLGNSLRFIASGTVMSDGDMDLASRLCQLHDGLADVV 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
+P+EAAVEQ FVNKDAVATLKLGQAR IA+L PA A +PV+EYAPN +KK+VIGVGH
Sbjct: 61 HLHQPDEAAVEQTFVNKDAVATLKLGQARGIAMLVPARAGLPVAEYAPNAVKKSVIGVGH 120
Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
GDK+QIHMMLK+LMP++ FKG DAADALAIA+CHA++ + A
Sbjct: 121 GDKQQIHMMLKILMPKAEFKGNDAADALAIAICHAHNRGGERMRRA 166
>gi|74318232|ref|YP_315972.1| Holliday junction resolvase [Thiobacillus denitrificans ATCC 25259]
gi|90146485|sp|Q3SGT0|RUVC_THIDA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|74057727|gb|AAZ98167.1| Crossover junction endodeoxyribonuclease RuvC [Thiobacillus
denitrificans ATCC 25259]
Length = 171
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 69/163 (42%), Positives = 96/163 (58%), Gaps = 1/163 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPGLR TG+G+++ G L +V+SG + SL RL L+ G+ +VI +R
Sbjct: 1 MRILGIDPGLRLTGFGLIEQTGQKLAYVASGVVK-SGEGSLPARLGILFGGINEVIATYR 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ AVE VFVN + +TL LGQAR AI + + V+EY IK+AV+G G K
Sbjct: 60 PDTCAVEIVFVNVNPQSTLLLGQARGAAICAAVSNDLTVAEYTALQIKQAVVGHGKAAKT 119
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
Q+ M+K L+ DAADALA A+ HA+ + G A
Sbjct: 120 QVQEMVKRLLALPIAPTADAADALACAITHAHGSRLGAQSTAG 162
>gi|182677006|ref|YP_001831152.1| Holliday junction resolvase [Beijerinckia indica subsp. indica ATCC
9039]
gi|226725467|sp|B2IAW3|RUVC_BEII9 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|182632889|gb|ACB93663.1| crossover junction endodeoxyribonuclease RuvC [Beijerinckia indica
subsp. indica ATCC 9039]
Length = 175
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 74/138 (53%), Positives = 99/138 (71%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M +RI+GIDPGLR GWGIV++ G NL +V+SG + S + LA RL L+ GL VI
Sbjct: 2 MPPRLRILGIDPGLRNMGWGIVELLGSNLTYVASGVVHSDGKGELAHRLKDLHVGLAGVI 61
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
+ P EAA+E+ FVN+D +TLKLGQAR IA++ PALA + V+EYA N IKK V G GH
Sbjct: 62 DAYTPHEAAIEETFVNRDPQSTLKLGQARGIALVVPALADLAVAEYAANLIKKTVTGNGH 121
Query: 121 GDKKQIHMMLKMLMPESF 138
+K+Q+ MM+K+L+P+S
Sbjct: 122 AEKQQVAMMVKILLPKSD 139
>gi|313143576|ref|ZP_07805769.1| crossover junction endodeoxyribonuclease ruvC [Helicobacter cinaedi
CCUG 18818]
gi|313128607|gb|EFR46224.1| crossover junction endodeoxyribonuclease ruvC [Helicobacter cinaedi
CCUG 18818]
Length = 171
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 50/163 (30%), Positives = 79/163 (48%), Gaps = 8/163 (4%)
Query: 4 SIRIIGIDPGLRRTGWGIVDVA------GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLT 57
+ I+GIDPG R G+ I+ +A +L + +G I +SL ++ + EG+
Sbjct: 1 MMYILGIDPGSRNCGYAIIQMADANMHLKGSLKLIEAGIIK-IKERSLQHQIVEFVEGID 59
Query: 58 DVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIG 117
V+K +E A+E +F + + +KL Q R L +EY P +KKA+ G
Sbjct: 60 MVLKLHHIDEVAIEDIFFAYNPKSVIKLAQFRGALSLKILQEIGNFAEYTPLQVKKAITG 119
Query: 118 VGHGDKKQIHMMLKMLMPES-FFKGKDAADALAIAVCHAYHAN 159
G DK Q+ M+K ++ K D DALAIA+ H+
Sbjct: 120 NGKADKAQVAFMVKKILGIKGEIKPLDITDALAIAITHSQRVG 162
>gi|114765388|ref|ZP_01444503.1| Holliday junction resolvase [Pelagibaca bermudensis HTCC2601]
gi|114542231|gb|EAU45261.1| Holliday junction resolvase [Roseovarius sp. HTCC2601]
Length = 163
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 89/161 (55%), Positives = 111/161 (68%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+R++GIDPGLRR GWGI+D G L V++G S LA RL L+ LT+V+ +
Sbjct: 1 MRVLGIDPGLRRLGWGIIDAEGSRLRHVANGVCESEGGDDLATRLLALHRQLTEVLTRFV 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ AAVEQ FVNKDAV TLKLGQAR +A+L PA +PV EYAPN +KK V+GVGH DK+
Sbjct: 61 PQIAAVEQTFVNKDAVGTLKLGQARGVALLVPAQFGLPVGEYAPNKVKKTVVGVGHADKR 120
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
QI M+KM +P G DAADALAIA+CHA+H +I
Sbjct: 121 QIDHMVKMQLPGVQIAGPDAADALAIAICHAHHVGPQQARI 161
>gi|218888285|ref|YP_002437606.1| Holliday junction resolvase [Desulfovibrio vulgaris str. 'Miyazaki
F']
gi|218759239|gb|ACL10138.1| crossover junction endodeoxyribonuclease RuvC [Desulfovibrio
vulgaris str. 'Miyazaki F']
Length = 197
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 57/158 (36%), Positives = 82/158 (51%), Gaps = 2/158 (1%)
Query: 10 IDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAA 69
IDPG + TGWG+V L V G I A RL L+ L ++ + P+EAA
Sbjct: 41 IDPGSQCTGWGVVREMSGVLTLVDCGAIR-PKGDDFAARLGHLFRELHALVGRYAPDEAA 99
Query: 70 VEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMM 129
+E V ++ LKLGQAR +A+ + A + V++Y P IKKA++G G DK+Q+ M
Sbjct: 100 IENVHAARNVATALKLGQARGVAVAACAAHGVVVADYQPTEIKKALVGTGGADKEQVSFM 159
Query: 130 LKMLMPESFFKGKDAADALAIAVCHAYHAN-SGYYKIA 166
+ ++ G D DALA AVCH S ++
Sbjct: 160 VARVLGAKGGWGLDTGDALAAAVCHLNARRLSRLARLG 197
>gi|187611517|sp|A8F0M4|RUVC_RICM5 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
Length = 157
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 56/150 (37%), Positives = 85/150 (56%), Gaps = 1/150 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ I+GIDP L GW +V L +++SG I + + ++ RL + L VI ++
Sbjct: 1 MIILGIDPALGSLGWAVVAKETAQLKYLASGIIKTNSKDAIHHRLAFINSTLEKVILEYQ 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P AA+E+ FVN ++V +LKLG AR + + + E+ PNT+KK V G GH +K
Sbjct: 61 PNMAAIEETFVNTNSVTSLKLGYARGAIMSLIGRYNLDMREFKPNTVKKTVTGYGHAEKD 120
Query: 125 QIHMMLKMLMPES-FFKGKDAADALAIAVC 153
QI M+K+L+P + D ADA+AIA
Sbjct: 121 QILHMIKLLLPGTFLITNSDEADAVAIAYT 150
>gi|238762970|ref|ZP_04623937.1| Crossover junction endodeoxyribonuclease ruvC [Yersinia
kristensenii ATCC 33638]
gi|238698728|gb|EEP91478.1| Crossover junction endodeoxyribonuclease ruvC [Yersinia
kristensenii ATCC 33638]
Length = 173
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 51/136 (37%), Positives = 82/136 (60%), Gaps = 1/136 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
++GIDPG R TG+G++ G L ++ SG I + V + RL +Y G+T++I ++P
Sbjct: 3 IVLGIDPGSRVTGYGVIRQQGRQLTYLGSGCIRTVV-DDMPTRLKLIYAGVTEIITQFQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQVF+ K+ + LKLGQAR AI++ +PVSEYA +K+ V+G G +K Q
Sbjct: 62 DFFAIEQVFMAKNPDSALKLGQARGAAIVAAVNLNLPVSEYAARQVKQTVVGTGAAEKSQ 121
Query: 126 IHMMLKMLMPESFFKG 141
+ M++ L+
Sbjct: 122 VQHMVRSLLKLPANPQ 137
>gi|242239585|ref|YP_002987766.1| Holliday junction resolvase [Dickeya dadantii Ech703]
gi|242131642|gb|ACS85944.1| crossover junction endodeoxyribonuclease RuvC [Dickeya dadantii
Ech703]
Length = 173
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 49/136 (36%), Positives = 82/136 (60%), Gaps = 1/136 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G+V G + ++ SG I + V + RL ++ G++++I ++P
Sbjct: 3 IILGIDPGSRITGYGVVRQQGRQISYLGSGCIRTVV-DDIPGRLKLIFAGVSEIITQFQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQVF+ ++A + LKLGQAR AI++ +PV EYA +K+ V+G G +K Q
Sbjct: 62 DCVAIEQVFMARNADSALKLGQARGAAIVAAVNQSLPVFEYAARQVKQTVVGTGAAEKSQ 121
Query: 126 IHMMLKMLMPESFFKG 141
+ M++ L+
Sbjct: 122 VQHMVRSLLKLPANPQ 137
>gi|34499680|ref|NP_903895.1| Holliday junction resolvase [Chromobacterium violaceum ATCC 12472]
gi|44888389|sp|Q7NQB5|RUVC_CHRVO RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|34105531|gb|AAQ61885.1| crossover junction endodeoxyribonuclease [Chromobacterium violaceum
ATCC 12472]
Length = 176
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 69/163 (42%), Positives = 101/163 (61%)
Query: 4 SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
S RI+GIDPG TG+G++DV G+ +V+SG I + LA R+ L +G+ VI +
Sbjct: 2 SRRILGIDPGSLITGFGVIDVVGNQRHYVASGAIRTKSGSPLAERVKVLVDGIHQVIDTY 61
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
RP EAA+E+VFVN + ATL LGQAR + + L +PV+EY +K++V+G G K
Sbjct: 62 RPTEAALERVFVNVNPAATLMLGQARGACMTALVLKDLPVAEYTALQVKQSVVGQGKAPK 121
Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
+Q+ M+ ++ S DAADALA+A+ HA H+ K+A
Sbjct: 122 EQVQYMVVRMLNLSGTPQADAADALAVALTHANHSGGAIGKLA 164
>gi|238788521|ref|ZP_04632314.1| Crossover junction endodeoxyribonuclease ruvC [Yersinia
frederiksenii ATCC 33641]
gi|238723434|gb|EEQ15081.1| Crossover junction endodeoxyribonuclease ruvC [Yersinia
frederiksenii ATCC 33641]
Length = 173
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 51/136 (37%), Positives = 82/136 (60%), Gaps = 1/136 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
++GIDPG R TG+G++ G L ++ SG I + V + RL +Y G+T++I ++P
Sbjct: 3 IVLGIDPGSRVTGYGVIRQQGRQLTYLGSGCIRTVV-DDMPTRLKLIYAGVTEIITQFQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQVF+ K+ + LKLGQAR AI++ +PVSEYA +K+ V+G G +K Q
Sbjct: 62 DFFAIEQVFMAKNPDSALKLGQARGAAIVAAVNLNLPVSEYAARQVKQTVVGTGAAEKSQ 121
Query: 126 IHMMLKMLMPESFFKG 141
+ M++ L+
Sbjct: 122 VQHMVRSLLKLPANPQ 137
>gi|89898694|ref|YP_515804.1| Holliday junction resolvase [Chlamydophila felis Fe/C-56]
gi|123722295|sp|Q252X9|RUVC_CHLFF RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|89332066|dbj|BAE81659.1| holliday junction nuclease [Chlamydophila felis Fe/C-56]
Length = 168
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 56/157 (35%), Positives = 93/157 (59%), Gaps = 4/157 (2%)
Query: 7 IIGIDPGLRRTGWGIVDVAGD-NLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG +G+ I+ V + S G I + SL R QL++ ++ V+ + P
Sbjct: 5 IMGIDPGTLVSGYAIILVEQRYKIRAHSYGAIRLSSKDSLTQRYKQLFQTISGVLNDITP 64
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ +E +V+K+ +T+KLG AR + +L+ AL IPV EYAPN K+AV+G G+ K+Q
Sbjct: 65 DAVVLETQYVHKNPQSTIKLGMARGVLVLAAALRDIPVFEYAPNVAKRAVVGRGNASKQQ 124
Query: 126 IHMMLKMLMPESFFKG---KDAADALAIAVCHAYHAN 159
+ +M+ ++ +D ADA A+A+CHA+ ++
Sbjct: 125 VQLMVSKMLNIPDVLNANCEDIADAFALAICHAHTSS 161
>gi|56707778|ref|YP_169674.1| Holliday junction resolvase [Francisella tularensis subsp.
tularensis SCHU S4]
gi|110670249|ref|YP_666806.1| Holliday junction resolvase [Francisella tularensis subsp.
tularensis FSC198]
gi|254370277|ref|ZP_04986282.1| holliday junction endodeoxyribonuclease [Francisella tularensis
subsp. tularensis FSC033]
gi|254874590|ref|ZP_05247300.1| holliday junction endodeoxyribonuclease [Francisella tularensis
subsp. tularensis MA00-2987]
gi|56604270|emb|CAG45289.1| holliday junction endodeoxyribonuclease [Francisella tularensis
subsp. tularensis SCHU S4]
gi|110320582|emb|CAL08672.1| holliday junction endodeoxyribonuclease [Francisella tularensis
subsp. tularensis FSC198]
gi|151568520|gb|EDN34174.1| holliday junction endodeoxyribonuclease [Francisella tularensis
subsp. tularensis FSC033]
gi|254840589|gb|EET19025.1| holliday junction endodeoxyribonuclease [Francisella tularensis
subsp. tularensis MA00-2987]
gi|282158950|gb|ADA78341.1| holliday junction endodeoxyribonuclease [Francisella tularensis
subsp. tularensis NE061598]
Length = 178
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 65/164 (39%), Positives = 104/164 (63%), Gaps = 2/164 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ I+GIDPG R TG+G++ V + + +V+SG I + RL Q+ +G+T +I +
Sbjct: 8 MVILGIDPGSRITGFGVIKVQDNKIYYVASGCIR-ITEITTPKRLKQIADGITQIINIYA 66
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P EAA+EQ+F+ ++ + +KLGQAR +A+ + A+ + VSEY+ IK+AV+G G K
Sbjct: 67 PTEAAIEQIFMFQNPMGAIKLGQARGVAMCTLAINNLEVSEYSAKQIKQAVVGTGGAAKS 126
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
Q+ M++ L+ S +DAADALAIA+CH + + S KI+
Sbjct: 127 QVQHMVQSLLGLSKKPPEDAADALAIAICHYHSSKS-LAKISGA 169
>gi|254510078|ref|ZP_05122145.1| crossover junction endodeoxyribonuclease RuvC [Rhodobacteraceae
bacterium KLH11]
gi|221533789|gb|EEE36777.1| crossover junction endodeoxyribonuclease RuvC [Rhodobacteraceae
bacterium KLH11]
Length = 165
Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats.
Identities = 66/137 (48%), Positives = 93/137 (67%), Gaps = 1/137 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPGLR GWG+++ G L V++G S L RL L+ + +VI+ +
Sbjct: 1 MRILGIDPGLRTLGWGVIESYGSRLSHVANGLCKSD-GDDLGERLLSLHNQIVEVIEEHQ 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P++AA+EQ FVNKD TLKLGQAR +A+L+ A A +PV EYAPN +KK V+GVGH +K+
Sbjct: 60 PDQAAIEQTFVNKDGAGTLKLGQARGVALLTLAQAGLPVGEYAPNRVKKTVVGVGHAEKE 119
Query: 125 QIHMMLKMLMPESFFKG 141
Q+ M+K+ +P KG
Sbjct: 120 QVLHMVKLQLPGCQPKG 136
>gi|254504745|ref|ZP_05116896.1| crossover junction endodeoxyribonuclease RuvC [Labrenzia alexandrii
DFL-11]
gi|222440816|gb|EEE47495.1| crossover junction endodeoxyribonuclease RuvC [Labrenzia alexandrii
DFL-11]
Length = 171
Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats.
Identities = 94/168 (55%), Positives = 128/168 (76%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M +IR++GIDPGLRRTGWG+++ AG+ L F++SGT+ S ++SLA RL +L++GLT V+
Sbjct: 1 MTHAIRLLGIDPGLRRTGWGMIEAAGNRLSFIASGTVTSDNKKSLAERLVELHDGLTAVV 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
+ P EAAVE FVNKDA ATLKLGQAR +A+L P+LA + V+EYAPN +KK V+G GH
Sbjct: 61 RQHNPAEAAVEHTFVNKDAGATLKLGQARGVALLVPSLAGLSVAEYAPNLVKKTVVGTGH 120
Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
+K+QI M+K+LMP + F DAADALAIAVCHA H + ++ ++
Sbjct: 121 AEKEQIRAMVKVLMPRATFNSDDAADALAIAVCHAQHRATTAAQLKAR 168
>gi|254372982|ref|ZP_04988471.1| holliday junction endodeoxyribonuclease [Francisella tularensis
subsp. novicida GA99-3549]
gi|151570709|gb|EDN36363.1| holliday junction endodeoxyribonuclease [Francisella novicida
GA99-3549]
Length = 171
Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats.
Identities = 65/164 (39%), Positives = 104/164 (63%), Gaps = 2/164 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ I+GIDPG R TG+G++ V + + +V+SG I + RL Q+ +G+T +I +
Sbjct: 1 MVILGIDPGSRITGFGVIKVQENKIYYVASGCIR-ITEITTPKRLKQIADGITQIINIYA 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P EAA+EQ+F+ ++ + +KLGQAR +A+ + A+ + VSEY+ IK+AV+G G K
Sbjct: 60 PTEAAIEQIFMFQNPMGAIKLGQARGVAMCTLAINNLEVSEYSAKQIKQAVVGTGGAAKS 119
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
Q+ M++ L+ S +DAADALAIA+CH + + S KI+
Sbjct: 120 QVQHMVQSLLGLSKKPPEDAADALAIAICHYHSSKS-LAKISGA 162
>gi|238792582|ref|ZP_04636215.1| Crossover junction endodeoxyribonuclease ruvC [Yersinia intermedia
ATCC 29909]
gi|238728217|gb|EEQ19738.1| Crossover junction endodeoxyribonuclease ruvC [Yersinia intermedia
ATCC 29909]
Length = 173
Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats.
Identities = 51/136 (37%), Positives = 82/136 (60%), Gaps = 1/136 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
++GIDPG R TG+G++ G L ++ SG I + V + RL +Y G+T++I ++P
Sbjct: 3 IVLGIDPGSRVTGYGVIRQQGRQLTYLGSGCIRTVV-DDMPTRLKLIYAGVTEIITQFQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQVF+ K+ + LKLGQAR AI++ +PVSEYA +K+ V+G G +K Q
Sbjct: 62 DFFAIEQVFMAKNPDSALKLGQARGAAIVAAVNLNLPVSEYAARQVKQTVVGTGAAEKSQ 121
Query: 126 IHMMLKMLMPESFFKG 141
+ M++ L+
Sbjct: 122 VQHMVRSLLKLPANPQ 137
>gi|257461142|ref|ZP_05626240.1| crossover junction endodeoxyribonuclease RuvC [Campylobacter
gracilis RM3268]
gi|257441516|gb|EEV16661.1| crossover junction endodeoxyribonuclease RuvC [Campylobacter
gracilis RM3268]
Length = 159
Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats.
Identities = 43/153 (28%), Positives = 77/153 (50%), Gaps = 2/153 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
++I+GIDPG R G+ I+ + + + +G + +++ F++ Q+ E + + +
Sbjct: 1 MKILGIDPGTRNLGYAILKKDVNKITLIEAGLVKM-KAENVQFQMTQMSEAIDQIFSAHK 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
+E A+E +F + + LKL Q R L +EY P +KK+V G K+
Sbjct: 60 IDEVAIESMFYAYNPQSVLKLAQFRGALALKILQIFGNFAEYTPLQVKKSVTGKAKAAKE 119
Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAY 156
Q+ M+K ++ K D DA+AIA+ HA
Sbjct: 120 QVAFMVKRILGINKEIKPLDITDAIAIALTHAN 152
>gi|150397837|ref|YP_001328304.1| Holliday junction resolvase [Sinorhizobium medicae WSM419]
gi|187611451|sp|A6UCT9|RUVC_SINMW RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|150029352|gb|ABR61469.1| crossover junction endodeoxyribonuclease RuvC [Sinorhizobium
medicae WSM419]
Length = 167
Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats.
Identities = 105/164 (64%), Positives = 135/164 (82%)
Query: 4 SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
IRIIG+DPGLRRTGWGI++ G++L F++SGTI S LA RLCQL++GL +V+ ++
Sbjct: 1 MIRIIGVDPGLRRTGWGIIETLGNSLRFIASGTITSDGDMDLASRLCQLHDGLAEVVHSY 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
+P EAAVEQ FVNKDA ATLKLGQAR IA+L PA A + V+EYAPN +KKAVIGVGHG+K
Sbjct: 61 QPHEAAVEQTFVNKDATATLKLGQARGIAMLVPARAGLRVAEYAPNAVKKAVIGVGHGEK 120
Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
+QIHMMLK+LMP++ FKG DAADALAIA+CHA++ + ++A+
Sbjct: 121 QQIHMMLKVLMPKAEFKGNDAADALAIAICHAHNRQAITSRLAA 164
>gi|284007615|emb|CBA73231.1| crossover junction endodeoxyribonuclease RuvC [Arsenophonus
nasoniae]
Length = 173
Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats.
Identities = 56/136 (41%), Positives = 86/136 (63%), Gaps = 1/136 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G+V G L ++ SG I + V L RL ++Y G+ ++I ++P
Sbjct: 3 IILGIDPGSRITGYGVVRQQGRQLIYLGSGCIRTQV-DDLPTRLQRIYAGIIEIITQYQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ AVEQVF+ K+A + LKLGQAR +AIL+ ++PV EYA +K++V+G G +KKQ
Sbjct: 62 DSFAVEQVFMAKNADSALKLGQARGVAILAAVNNQLPVFEYAARQVKQSVVGTGAAEKKQ 121
Query: 126 IHMMLKMLMPESFFKG 141
+ M+ ++ S
Sbjct: 122 VQHMVCSVLKLSSHPQ 137
>gi|78043886|ref|YP_360356.1| crossover junction endodeoxyribonuclease RuvC [Carboxydothermus
hydrogenoformans Z-2901]
gi|90146444|sp|Q3ABX8|RUVC_CARHZ RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|77996001|gb|ABB14900.1| crossover junction endodeoxyribonuclease RuvC [Carboxydothermus
hydrogenoformans Z-2901]
Length = 158
Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats.
Identities = 49/149 (32%), Positives = 77/149 (51%), Gaps = 2/149 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
++IIGIDPG G G+++ L + I + RL +++ L +++ +
Sbjct: 1 MKIIGIDPGTAIVGVGVLEKKNGKLIVKNFQAITTPPIAK-EKRLKIIFQKLNEILIQEK 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
PE VE++F +K+ + +G+AR + +L+ AL IPV E P +K V G GH K
Sbjct: 60 PEIVVVEELFFSKNVKTAISVGEARGVVLLASALNDIPVLELKPVEVKTIVTGYGHAPKS 119
Query: 125 QIHMMLKMLMPES-FFKGKDAADALAIAV 152
Q+ M+ L+ K D ADALAIA
Sbjct: 120 QVEYMIAKLLGLKTPPKPDDVADALAIAY 148
>gi|256371997|ref|YP_003109821.1| crossover junction endodeoxyribonuclease RuvC [Acidimicrobium
ferrooxidans DSM 10331]
gi|256008581|gb|ACU54148.1| crossover junction endodeoxyribonuclease RuvC [Acidimicrobium
ferrooxidans DSM 10331]
Length = 164
Score = 145 bits (365), Expect = 2e-33, Method: Composition-based stats.
Identities = 45/155 (29%), Positives = 81/155 (52%), Gaps = 2/155 (1%)
Query: 1 MRKS-IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDV 59
M ++ +RI+G+DPGL R G+ +++ GD L V +G + + R A RL ++ EG V
Sbjct: 1 MPEARLRILGVDPGLARLGYAVIEATGDTLRLVGAGLVTTAARACRASRLHEIAEGFESV 60
Query: 60 IKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVG 119
+ ++ P EAA+E++ ++ + L + + + L+ + + +PNT+K A G
Sbjct: 61 LDDFDPTEAAIERLAFTRNVSSALPVSEVVGVVRLALWRRGVVAYDISPNTVKNAATSGG 120
Query: 120 HGDKKQIHMMLKMLMPESFFK-GKDAADALAIAVC 153
K+Q+ + L+ D ADA+AIA
Sbjct: 121 SAAKEQVQRTVVRLLGLDEPPQPPDVADAMAIAYT 155
>gi|329942437|ref|ZP_08291247.1| crossover junction endodeoxyribonuclease RuvC [Chlamydophila
psittaci Cal10]
gi|332287078|ref|YP_004421979.1| Holliday junction resolvase [Chlamydophila psittaci 6BC]
gi|313847674|emb|CBY16662.1| putative crossover junction endodeoxyribonuclease RuvC
[Chlamydophila psittaci RD1]
gi|325507012|gb|ADZ18650.1| Holliday junction resolvase [Chlamydophila psittaci 6BC]
gi|328815347|gb|EGF85335.1| crossover junction endodeoxyribonuclease RuvC [Chlamydophila
psittaci Cal10]
Length = 168
Score = 145 bits (365), Expect = 2e-33, Method: Composition-based stats.
Identities = 55/156 (35%), Positives = 89/156 (57%), Gaps = 4/156 (2%)
Query: 7 IIGIDPGLRRTGWGIVDVAGD-NLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG +G+ I+ V + S G I + SL R QL++ L+ V+ N P
Sbjct: 5 IMGIDPGTLVSGYAIILVEQRYKIRAHSYGAIRLSSKDSLTQRYKQLFQTLSGVLDNVTP 64
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ +E +V+K+ + +KLG R + +L+ AL IPV EY PN K+AV+G G+ K+Q
Sbjct: 65 DAVVLETQYVHKNPQSAIKLGMGRGVLVLAAALRDIPVFEYTPNVAKRAVVGKGNASKQQ 124
Query: 126 IHMMLKMLMPESFFKG---KDAADALAIAVCHAYHA 158
+ +M+ ++ +D ADA A+A+CHA+ +
Sbjct: 125 VQLMVSKILNIPDVLNSNCEDIADAFALAICHAHTS 160
>gi|187611519|sp|A5CES8|RUVC_ORITB RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
Length = 159
Score = 145 bits (365), Expect = 2e-33, Method: Composition-based stats.
Identities = 54/149 (36%), Positives = 85/149 (57%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ I+GIDP L TGWG++ ++ + ++ SG I + + SL +L + + +I +
Sbjct: 1 MIILGIDPSLVSTGWGVISISDSMVNYIDSGVIKTVSKDSLVLKLGNISLMIEKLITRFN 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P A+E+VF+NK+ +++ L QAR + I SEYAPN IKKA++G G +K
Sbjct: 61 PFHVAMEEVFINKNYSSSVTLIQARGAIMSVIGRYNIDFSEYAPNKIKKAIVGAGKAEKH 120
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVC 153
Q+ M+K+LM KD +DALA A
Sbjct: 121 QVQQMVKLLMHIKKAISKDESDALATAYT 149
>gi|187611417|sp|A6VQA5|RUVC_ACTSZ RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
Length = 190
Score = 145 bits (365), Expect = 2e-33, Method: Composition-based stats.
Identities = 64/163 (39%), Positives = 98/163 (60%), Gaps = 1/163 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G L ++ SG I + L RL ++Y G+T++I ++P
Sbjct: 3 IILGIDPGSRVTGYGVIRQTGRTLEYLGSGVIRTQA-DDLPTRLKRIYAGVTEIITQFQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+E+VF+ K+ + LKLGQAR AI++ +PV EYA +K+ V+G+G DK Q
Sbjct: 62 DMFAIEEVFLAKNPNSALKLGQARGTAIVAAVNRDLPVFEYAARLVKQTVVGIGSADKSQ 121
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
+ M+ ++ S DAADALAIA+ HA+ + AS
Sbjct: 122 VQDMVARILKLSDKPQADAADALAIAITHAHTIRHSLHVAASA 164
>gi|152979458|ref|YP_001345087.1| Holliday junction resolvase [Actinobacillus succinogenes 130Z]
gi|150841181|gb|ABR75152.1| crossover junction endodeoxyribonuclease RuvC [Actinobacillus
succinogenes 130Z]
Length = 205
Score = 145 bits (365), Expect = 2e-33, Method: Composition-based stats.
Identities = 64/163 (39%), Positives = 98/163 (60%), Gaps = 1/163 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G L ++ SG I + L RL ++Y G+T++I ++P
Sbjct: 18 IILGIDPGSRVTGYGVIRQTGRTLEYLGSGVIRTQA-DDLPTRLKRIYAGVTEIITQFQP 76
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+E+VF+ K+ + LKLGQAR AI++ +PV EYA +K+ V+G+G DK Q
Sbjct: 77 DMFAIEEVFLAKNPNSALKLGQARGTAIVAAVNRDLPVFEYAARLVKQTVVGIGSADKSQ 136
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
+ M+ ++ S DAADALAIA+ HA+ + AS
Sbjct: 137 VQDMVARILKLSDKPQADAADALAIAITHAHTIRHSLHVAASA 179
>gi|329296285|ref|ZP_08253621.1| Holliday junction resolvase [Plautia stali symbiont]
Length = 175
Score = 145 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 52/131 (39%), Positives = 81/131 (61%), Gaps = 1/131 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G L ++ SG I + V L RL +Y G++++I + P
Sbjct: 3 IILGIDPGSRVTGYGVIRQTGRQLSYLGSGCIRTNV-TDLPSRLKLIYAGVSEIITQFAP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQVF+ K+A + LKLGQAR AI++ +PV EYA +K+ V G+G +K Q
Sbjct: 62 DYFAIEQVFMAKNADSALKLGQARGAAIVAAVNLDLPVFEYAARQVKQTVTGIGSAEKSQ 121
Query: 126 IHMMLKMLMPE 136
+ M++ L+
Sbjct: 122 VQHMVRTLLKL 132
>gi|254441770|ref|ZP_05055263.1| crossover junction endodeoxyribonuclease RuvC [Octadecabacter
antarcticus 307]
gi|198251848|gb|EDY76163.1| crossover junction endodeoxyribonuclease RuvC [Octadecabacter
antarcticus 307]
Length = 162
Score = 145 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 78/149 (52%), Positives = 97/149 (65%), Gaps = 1/149 (0%)
Query: 16 RTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFV 75
TGWG++ V G L V++G S LA RL L++ L VI + P+ AAVEQ FV
Sbjct: 2 NTGWGVIVVNGSRLSHVANGVCKSGKG-DLAVRLLALHDQLEAVIAEFAPDAAAVEQTFV 60
Query: 76 NKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMP 135
N + ATLKLGQAR IA+L PA A + V EYAPN IKKAV+GVGH DK QI M+K+ +P
Sbjct: 61 NSNGAATLKLGQARGIAMLVPARAGLEVGEYAPNAIKKAVVGVGHADKAQIAHMVKLQLP 120
Query: 136 ESFFKGKDAADALAIAVCHAYHANSGYYK 164
G D+ADALAIA+CHA+H S +
Sbjct: 121 GVMLSGPDSADALAIAICHAHHLQSASAR 149
>gi|49476148|ref|YP_034189.1| Holliday junction resolvase [Bartonella henselae str. Houston-1]
gi|81648456|sp|Q6G5Q9|RUVC_BARHE RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|49238956|emb|CAF28254.1| Holliday junction nuclease ruvC [Bartonella henselae str.
Houston-1]
Length = 169
Score = 145 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 94/139 (67%), Positives = 118/139 (84%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M ++IRIIGIDPGLRRTGWG++D +G+ L FV++GT+ S R LA RLCQLY+GLTD++
Sbjct: 1 MAETIRIIGIDPGLRRTGWGVIDFSGNRLQFVAAGTLTSDARCDLASRLCQLYKGLTDIL 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
+ P+EAAVE VFVNKDA ATLKLGQARAIA+L+PA A +PV EYAPN +KK+VIGVGH
Sbjct: 61 HQFMPQEAAVEHVFVNKDATATLKLGQARAIALLAPAQANLPVFEYAPNKVKKSVIGVGH 120
Query: 121 GDKKQIHMMLKMLMPESFF 139
GDK+QIHMM+K+L+P + F
Sbjct: 121 GDKEQIHMMVKVLLPRAEF 139
>gi|51473230|ref|YP_066987.1| Holliday junction resolvase [Rickettsia typhi str. Wilmington]
gi|81610846|sp|Q68XY7|RUVC_RICTY RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|51459542|gb|AAU03505.1| Holliday junction nuclease [Rickettsia typhi str. Wilmington]
Length = 157
Score = 145 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 54/150 (36%), Positives = 84/150 (56%), Gaps = 1/150 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ ++GIDP L GW +V L +++SGTI + + + RL + L VI ++
Sbjct: 1 MIVLGIDPALGNLGWALVAKEYTKLKYLASGTIKTHSKDEIHNRLAFINSTLEKVILKYQ 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P AA+E+ F+N ++V +LKLG AR + + + E+ PNT+KK V G GH K+
Sbjct: 61 PNIAAIEETFINTNSVTSLKLGYARGAIMSLIGRYNLNMQEFKPNTVKKTVTGYGHAKKE 120
Query: 125 QIHMMLKMLMPESF-FKGKDAADALAIAVC 153
QI M+K L+P + D ADA+A+A
Sbjct: 121 QILYMIKHLIPGTDLITNSDEADAVALAYT 150
>gi|161501898|ref|YP_219548.2| Holliday junction resolvase [Chlamydophila abortus S26/3]
Length = 168
Score = 145 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 55/156 (35%), Positives = 89/156 (57%), Gaps = 4/156 (2%)
Query: 7 IIGIDPGLRRTGWGIVDVAGD-NLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG +G+ I+ V + S G I + SL R QL++ L+ V+ N P
Sbjct: 5 IMGIDPGTLVSGYAIILVEQRYKIRAHSYGAIRLSSKDSLTQRYKQLFQTLSGVLDNVTP 64
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ +E +V+K+ + +KLG R + +L+ AL IPV EY PN K+AV+G G+ K+Q
Sbjct: 65 DAVVLETQYVHKNPQSAIKLGMGRGVLVLAAALRDIPVFEYTPNVAKRAVVGKGNASKQQ 124
Query: 126 IHMMLKMLMPESFFKG---KDAADALAIAVCHAYHA 158
+ +M+ ++ +D ADA A+A+CHA+ +
Sbjct: 125 VQLMVSKILNIPDVLNSDCEDIADAFALAICHAHTS 160
>gi|258545753|ref|ZP_05705987.1| crossover junction endodeoxyribonuclease RuvC [Cardiobacterium
hominis ATCC 15826]
gi|258518998|gb|EEV87857.1| crossover junction endodeoxyribonuclease RuvC [Cardiobacterium
hominis ATCC 15826]
Length = 174
Score = 145 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 71/164 (43%), Positives = 112/164 (68%), Gaps = 1/164 (0%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M S R++ IDPG R TG+GI+DV G + +V SG I + + RL +++G+T++I
Sbjct: 1 MALSRRVLAIDPGSRVTGYGIIDVLGQEVRYVDSGCIRL-ADEEMPLRLMMIHQGITELI 59
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
+++RP+E A+E +FV+K+ + LKLGQAR +AI + LA++PV+EYA +IK+AV+G G
Sbjct: 60 RSYRPQEFAIEAIFVHKNPASALKLGQARGVAICAAVLAQLPVAEYAAKSIKQAVVGKGG 119
Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYK 164
+K Q+ M+K+L+ S DAADALA+A+ HA+H + +
Sbjct: 120 AEKTQVQHMVKILLNRSGVIQSDAADALAVALTHAHHLQTQRRQ 163
>gi|59711557|ref|YP_204333.1| Holliday junction resolvase [Vibrio fischeri ES114]
gi|197336110|ref|YP_002155713.1| crossover junction endodeoxyribonuclease RuvC [Vibrio fischeri
MJ11]
gi|71649500|sp|Q5E6A1|RUVC_VIBF1 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|226698769|sp|B5FCQ0|RUVC_VIBFM RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|59479658|gb|AAW85445.1| component of RuvABC resolvasome, endonuclease [Vibrio fischeri
ES114]
gi|197317600|gb|ACH67047.1| crossover junction endodeoxyribonuclease RuvC [Vibrio fischeri
MJ11]
Length = 173
Score = 145 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 66/163 (40%), Positives = 100/163 (61%), Gaps = 2/163 (1%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G +L ++ SG I ++ L RL Q+Y G++++I ++P
Sbjct: 3 IILGIDPGSRITGYGVIRQNGRHLQYLGSGCIRMSEKE-LPGRLKQIYAGVSEIITQFQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQVF++K+A + LKLGQAR AI++ A +PV EYA IK+AV G G DK Q
Sbjct: 62 DVFAIEQVFMSKNADSALKLGQARGSAIVAAVNADLPVYEYAARLIKQAVTGTGGADKSQ 121
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
+ M+ ++ DAADAL A+CHA + +A +
Sbjct: 122 VQHMVMSMLKLPAKPQADAADALGAAICHANTNKT-LIALAGK 163
>gi|330991871|ref|ZP_08315820.1| Crossover junction endodeoxyribonuclease ruvC [Gluconacetobacter
sp. SXCC-1]
gi|329760892|gb|EGG77387.1| Crossover junction endodeoxyribonuclease ruvC [Gluconacetobacter
sp. SXCC-1]
Length = 168
Score = 145 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 72/159 (45%), Positives = 107/159 (67%)
Query: 4 SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+RI+GIDPGLR TGWG++ G+ L V+ G I + + RL L++ L ++ +N+
Sbjct: 1 MVRILGIDPGLRFTGWGVITAQGNRLTHVADGVIATDSALGVPERLRHLHDALLELARNF 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
P+EAAVE+ +VN++ ATLKLG AR + +L P L IPV+EY T+K+AV+G G K
Sbjct: 61 APDEAAVEETYVNRNGSATLKLGYARGVGLLVPMLLDIPVAEYGAKTVKRAVVGTGAATK 120
Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGY 162
+Q+ MM++ ++P + K DAADALA+A+CHA+H S
Sbjct: 121 EQVSMMVRRILPTALLKRADAADALAVAICHAHHRTSAA 159
>gi|148241827|ref|YP_001226984.1| Holliday junction resolvase [Synechococcus sp. RCC307]
gi|166233306|sp|A5GRX2|RUVC_SYNR3 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|147850137|emb|CAK27631.1| Crossover junction endodeoxyribonuclease RuvC (Holliday juction
resolvase RuvC) [Synechococcus sp. RCC307]
Length = 157
Score = 145 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 50/158 (31%), Positives = 83/158 (52%), Gaps = 5/158 (3%)
Query: 5 IRIIGIDPGLRRTGWGIVDVA---GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
+RI+G+DPGL R G+G+++V + V G I + + R+ ++ L +++
Sbjct: 1 MRILGLDPGLARVGYGVLEVDEQRRNQPEMVDCGIISTDAGRGEGERMVEIARDLRQLLR 60
Query: 62 NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
RP+ AAVE+ F + + + QAR + I++ A +IP EY P IK A+ G GH
Sbjct: 61 LHRPDLAAVEKFFFYRSSNTIAVV-QARGVLIMTLARFQIPTVEYPPMQIKLALAGSGHA 119
Query: 122 DKKQIHMML-KMLMPESFFKGKDAADALAIAVCHAYHA 158
DK ++ + + L K DAADALA+ + +
Sbjct: 120 DKGEVQDAVMRELRLNERPKPDDAADALAVGLTAWFQR 157
>gi|209767454|gb|ACI82039.1| Holliday junction nuclease [Escherichia coli]
Length = 173
Score = 145 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 51/136 (37%), Positives = 82/136 (60%), Gaps = 1/136 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG TG+G++ G L ++ SG I + L RL +Y G+T++I ++P
Sbjct: 3 IILGIDPGSCVTGYGVIRQVGRQLSYLGSGCIRT-KVDDLPSRLKLIYAGVTEIITQFQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQVF+ K+A + LKLGQAR +AI++ +PV EYA +K+ V+G+G +K Q
Sbjct: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121
Query: 126 IHMMLKMLMPESFFKG 141
+ M++ L+
Sbjct: 122 VQHMVRTLLKLPANPQ 137
>gi|56697948|ref|YP_168320.1| Holliday junction resolvase [Ruegeria pomeroyi DSS-3]
gi|81558342|sp|Q5LNT6|RUVC_SILPO RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|56679685|gb|AAV96351.1| crossover junction endodeoxyribonuclease RuvC [Ruegeria pomeroyi
DSS-3]
Length = 165
Score = 145 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 67/137 (48%), Positives = 94/137 (68%), Gaps = 1/137 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPGLR GWG+++ G L V++G S L RL L+ + +VI+ +R
Sbjct: 1 MRILGIDPGLRTLGWGVIEQRGSRLSHVANGLCHSD-GDDLGERLLSLHNQIVEVIEEYR 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P++AA+EQ FVNKD TLKLGQAR +A+L+ A A +PV EYAPN +KK V+GVGH +K+
Sbjct: 60 PDQAAIEQTFVNKDGAGTLKLGQARGVALLTLAQAGLPVGEYAPNRVKKTVVGVGHAEKE 119
Query: 125 QIHMMLKMLMPESFFKG 141
Q+ M+K+ +P KG
Sbjct: 120 QVIHMVKLQLPGCLPKG 136
>gi|325279153|ref|YP_004251695.1| Crossover junction endodeoxyribonuclease ruvC [Odoribacter
splanchnicus DSM 20712]
gi|324310962|gb|ADY31515.1| Crossover junction endodeoxyribonuclease ruvC [Odoribacter
splanchnicus DSM 20712]
Length = 185
Score = 145 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 54/169 (31%), Positives = 84/169 (49%), Gaps = 5/169 (2%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDV--AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTD 58
M K I+GIDPG G+ I+ V V SG + +L +++
Sbjct: 1 MEKL--IMGIDPGTNFMGYAIIKVFGKNQKPELVVSGIVDMIKITDPYIKLQRIFSRTLQ 58
Query: 59 VIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGV 118
VI +++P+E A+E F K+ + LKLG+A+ +AI + IP+ EYAP IK +V G
Sbjct: 59 VIDSYQPDELAIEAQFYGKNVQSMLKLGRAQGVAIAAALQRDIPIFEYAPRKIKMSVTGS 118
Query: 119 GHGDKKQIHMML-KMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
G K+QI ++L K + + + D DA+AIA CH + +
Sbjct: 119 GTASKEQIALLLGKFMTLHTTSEMLDETDAIAIAYCHYLQSCNPLTSAG 167
>gi|239948354|ref|ZP_04700107.1| crossover junction endodeoxyribonuclease RuvC [Rickettsia
endosymbiont of Ixodes scapularis]
gi|239922630|gb|EER22654.1| crossover junction endodeoxyribonuclease RuvC [Rickettsia
endosymbiont of Ixodes scapularis]
Length = 172
Score = 145 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 56/156 (35%), Positives = 86/156 (55%), Gaps = 1/156 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ ++GIDP L GW +V L +++SG I + + + RL + L VI ++
Sbjct: 16 MIVLGIDPALGSLGWAVVAKETAKLKYLASGIIKTNSKDEIHHRLAFINSTLEKVILEYQ 75
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P AA+E+ FVN ++V +LKLG AR + + + E+ PNT+KK V G GH +K
Sbjct: 76 PNMAAIEETFVNTNSVTSLKLGYARGAIMSLIGRYNLGLREFKPNTVKKTVTGYGHAEKD 135
Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHAN 159
QI M+K+L+P S D AD++AIA + N
Sbjct: 136 QILHMIKLLLPGTSLITNSDEADSVAIAYTYLVTKN 171
>gi|163845284|ref|YP_001622939.1| Holliday junction resolvase [Brucella suis ATCC 23445]
gi|189046059|sp|A9WWI1|RUVC_BRUSI RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|163676007|gb|ABY40117.1| crossover junction endodeoxyribonuclease RuvC [Brucella suis ATCC
23445]
Length = 173
Score = 145 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 106/160 (66%), Positives = 130/160 (81%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M+++IRIIGIDPGLRRTGWGIV+ G++L F+ SGT+ S LA RLCQL+EGL+ V+
Sbjct: 1 MKETIRIIGIDPGLRRTGWGIVESLGNSLHFIGSGTVTSNAEMDLASRLCQLHEGLSKVL 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
+ P EAAVE FVNKDA ATLKLGQAR IA+L+PA A +PV+EYAPN +KKAVIGVGH
Sbjct: 61 HEFMPHEAAVEHTFVNKDATATLKLGQARGIALLAPAQAGLPVTEYAPNAVKKAVIGVGH 120
Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
G+K+QIHMM+K+LMP + F DAADALAIA+CHA+H S
Sbjct: 121 GEKQQIHMMVKVLMPRASFDTSDAADALAIAICHAHHRQS 160
>gi|86359069|ref|YP_470961.1| Holliday junction resolvase [Rhizobium etli CFN 42]
gi|123724728|sp|Q2K4K2|RUVC_RHIEC RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|86283171|gb|ABC92234.1| crossover junction endoribonuclease protein [Rhizobium etli CFN 42]
Length = 169
Score = 145 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 111/166 (66%), Positives = 136/166 (81%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M+ +IRIIGIDPGLRRTGWGI+D G++L FV+SGT+ S LA RLCQL++GL D++
Sbjct: 1 MQNTIRIIGIDPGLRRTGWGIIDTLGNSLKFVASGTVTSDGEMDLASRLCQLHDGLADIV 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
+P+EAAVEQ FVNKDAVATLKLGQAR IA+L PA A +PVSEYAPN +KKAVIGVGH
Sbjct: 61 HAHKPDEAAVEQTFVNKDAVATLKLGQARGIAMLVPARAGLPVSEYAPNAVKKAVIGVGH 120
Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
G+K+QIHMMLK+LMP++ FKG DAADALAIA+CHA++ + A
Sbjct: 121 GEKQQIHMMLKILMPKAEFKGDDAADALAIAICHAHNRGGHRMRQA 166
>gi|108757135|ref|YP_633129.1| crossover junction endodeoxyribonuclease RuvC [Myxococcus xanthus
DK 1622]
gi|122980861|sp|Q1D2J4|RUVC_MYXXD RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|108461015|gb|ABF86200.1| crossover junction endodeoxyribonuclease RuvC [Myxococcus xanthus
DK 1622]
Length = 191
Score = 144 bits (364), Expect = 3e-33, Method: Composition-based stats.
Identities = 60/166 (36%), Positives = 90/166 (54%), Gaps = 2/166 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+R++G+DPG R G+G+V+ L V G I L+ RL L+ LT + +R
Sbjct: 1 MRVLGVDPGSRFMGFGVVEEKRGRLVHVGHGVIKGDPALPLSDRLRDLHGALTAALVKYR 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P AVE VF ++A + L LG AR +A+L+ A A +PV EYAP +KKAV G K
Sbjct: 61 PAAVAVEGVFTFRNARSALVLGHARGVALLAAAQAGLPVFEYAPAKVKKAVGAGGADGKD 120
Query: 125 QIHMMLKMLMPE--SFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
+ M++ + S + DA+DALA+A+CH H + ++
Sbjct: 121 AVARMVRTFLELDASVLERADASDALAVALCHLNHGRAAVPAASAS 166
>gi|328914312|gb|AEB55145.1| crossover junction endodeoxyribonuclease RuvC [Chlamydophila
psittaci 6BC]
Length = 165
Score = 144 bits (364), Expect = 3e-33, Method: Composition-based stats.
Identities = 55/156 (35%), Positives = 89/156 (57%), Gaps = 4/156 (2%)
Query: 7 IIGIDPGLRRTGWGIVDVAGD-NLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG +G+ I+ V + S G I + SL R QL++ L+ V+ N P
Sbjct: 2 IMGIDPGTLVSGYAIILVEQRYKIRAHSYGAIRLSSKDSLTQRYKQLFQTLSGVLDNVTP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ +E +V+K+ + +KLG R + +L+ AL IPV EY PN K+AV+G G+ K+Q
Sbjct: 62 DAVVLETQYVHKNPQSAIKLGMGRGVLVLAAALRDIPVFEYTPNVAKRAVVGKGNASKQQ 121
Query: 126 IHMMLKMLMPESFFKG---KDAADALAIAVCHAYHA 158
+ +M+ ++ +D ADA A+A+CHA+ +
Sbjct: 122 VQLMVSKILNIPDVLNSNCEDIADAFALAICHAHTS 157
>gi|123442636|ref|YP_001006613.1| Holliday junction resolvase [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|166233311|sp|A1JRK2|RUVC_YERE8 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|122089597|emb|CAL12446.1| crossover junction endodeoxyribonuclease [Yersinia enterocolitica
subsp. enterocolitica 8081]
Length = 173
Score = 144 bits (364), Expect = 3e-33, Method: Composition-based stats.
Identities = 51/136 (37%), Positives = 82/136 (60%), Gaps = 1/136 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
++GIDPG R TG+G++ G L ++ SG I + V + RL +Y G+T++I ++P
Sbjct: 3 IVLGIDPGSRVTGYGVIRQQGRQLTYLGSGCIRTVV-DDMPTRLKLIYAGVTEIITQFQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQVF+ K+ + LKLGQAR AI++ +PVSEYA +K+ V+G G +K Q
Sbjct: 62 DFFAIEQVFMAKNPDSALKLGQARGAAIVAAVNLNLPVSEYAARQVKQTVVGTGAAEKSQ 121
Query: 126 IHMMLKMLMPESFFKG 141
+ M++ L+
Sbjct: 122 VQHMVRSLLQLPANPQ 137
>gi|17986615|ref|NP_539249.1| Holliday junction resolvase [Brucella melitensis bv. 1 str. 16M]
gi|62290576|ref|YP_222369.1| Holliday junction resolvase [Brucella abortus bv. 1 str. 9-941]
gi|82700492|ref|YP_415066.1| Holliday junction resolvase [Brucella melitensis biovar Abortus
2308]
gi|148560343|ref|YP_001259557.1| Holliday junction resolvase [Brucella ovis ATCC 25840]
gi|161619633|ref|YP_001593520.1| Holliday junction resolvase [Brucella canis ATCC 23365]
gi|189024794|ref|YP_001935562.1| Holliday junction resolvase [Brucella abortus S19]
gi|225628273|ref|ZP_03786307.1| crossover junction endodeoxyribonuclease RuvC [Brucella ceti str.
Cudo]
gi|225853160|ref|YP_002733393.1| Holliday junction resolvase [Brucella melitensis ATCC 23457]
gi|237816081|ref|ZP_04595077.1| crossover junction endodeoxyribonuclease RuvC [Brucella abortus
str. 2308 A]
gi|239832791|ref|ZP_04681120.1| crossover junction endodeoxyribonuclease RuvC [Ochrobactrum
intermedium LMG 3301]
gi|254689872|ref|ZP_05153126.1| Holliday junction resolvase [Brucella abortus bv. 6 str. 870]
gi|254698023|ref|ZP_05159851.1| Holliday junction resolvase [Brucella abortus bv. 2 str. 86/8/59]
gi|254700365|ref|ZP_05162193.1| Holliday junction resolvase [Brucella suis bv. 5 str. 513]
gi|254703483|ref|ZP_05165311.1| Holliday junction resolvase [Brucella suis bv. 3 str. 686]
gi|254708428|ref|ZP_05170256.1| Holliday junction resolvase [Brucella pinnipedialis M163/99/10]
gi|254708718|ref|ZP_05170529.1| Holliday junction resolvase [Brucella pinnipedialis B2/94]
gi|254714565|ref|ZP_05176376.1| Holliday junction resolvase [Brucella ceti M644/93/1]
gi|254717462|ref|ZP_05179273.1| Holliday junction resolvase [Brucella ceti M13/05/1]
gi|254719707|ref|ZP_05181518.1| Holliday junction resolvase [Brucella sp. 83/13]
gi|254730907|ref|ZP_05189485.1| Holliday junction resolvase [Brucella abortus bv. 4 str. 292]
gi|256030244|ref|ZP_05443858.1| Holliday junction resolvase [Brucella pinnipedialis M292/94/1]
gi|256045314|ref|ZP_05448208.1| Holliday junction resolvase [Brucella melitensis bv. 1 str. Rev.1]
gi|256061741|ref|ZP_05451878.1| Holliday junction resolvase [Brucella neotomae 5K33]
gi|256114272|ref|ZP_05455017.1| Holliday junction resolvase [Brucella melitensis bv. 3 str. Ether]
gi|256258126|ref|ZP_05463662.1| Holliday junction resolvase [Brucella abortus bv. 9 str. C68]
gi|256263349|ref|ZP_05465881.1| crossover junction endodeoxyribonuclease ruvC [Brucella melitensis
bv. 2 str. 63/9]
gi|256370113|ref|YP_003107624.1| Holliday junction resolvase [Brucella microti CCM 4915]
gi|260167919|ref|ZP_05754730.1| Holliday junction resolvase [Brucella sp. F5/99]
gi|260547180|ref|ZP_05822918.1| crossover junction endodeoxyribonuclease ruvC [Brucella abortus
NCTC 8038]
gi|260565795|ref|ZP_05836278.1| crossover junction endodeoxyribonuclease ruvC [Brucella melitensis
bv. 1 str. 16M]
gi|260568789|ref|ZP_05839257.1| crossover junction endodeoxyribonuclease ruvC [Brucella suis bv. 4
str. 40]
gi|260755404|ref|ZP_05867752.1| crossover junction endodeoxyribonuclease ruvC [Brucella abortus bv.
6 str. 870]
gi|260758626|ref|ZP_05870974.1| crossover junction endodeoxyribonuclease ruvC [Brucella abortus bv.
4 str. 292]
gi|260762458|ref|ZP_05874795.1| crossover junction endodeoxyribonuclease ruvC [Brucella abortus bv.
2 str. 86/8/59]
gi|260884419|ref|ZP_05896033.1| crossover junction endodeoxyribonuclease ruvC [Brucella abortus bv.
9 str. C68]
gi|261219294|ref|ZP_05933575.1| crossover junction endodeoxyribonuclease ruvC [Brucella ceti
M13/05/1]
gi|261315927|ref|ZP_05955124.1| crossover junction endodeoxyribonuclease ruvC [Brucella
pinnipedialis M163/99/10]
gi|261316210|ref|ZP_05955407.1| crossover junction endodeoxyribonuclease ruvC [Brucella
pinnipedialis B2/94]
gi|261322355|ref|ZP_05961552.1| crossover junction endodeoxyribonuclease ruvC [Brucella ceti
M644/93/1]
gi|261325745|ref|ZP_05964942.1| crossover junction endodeoxyribonuclease ruvC [Brucella neotomae
5K33]
gi|261750860|ref|ZP_05994569.1| crossover junction endodeoxyribonuclease ruvC [Brucella suis bv. 5
str. 513]
gi|261754113|ref|ZP_05997822.1| crossover junction endodeoxyribonuclease ruvC [Brucella suis bv. 3
str. 686]
gi|261757358|ref|ZP_06001067.1| crossover junction endodeoxyribonuclease ruvC [Brucella sp. F5/99]
gi|265984722|ref|ZP_06097457.1| crossover junction endodeoxyribonuclease ruvC [Brucella sp. 83/13]
gi|265987272|ref|ZP_06099829.1| crossover junction endodeoxyribonuclease ruvC [Brucella
pinnipedialis M292/94/1]
gi|265991739|ref|ZP_06104296.1| crossover junction endodeoxyribonuclease ruvC [Brucella melitensis
bv. 1 str. Rev.1]
gi|265995576|ref|ZP_06108133.1| crossover junction endodeoxyribonuclease ruvC [Brucella melitensis
bv. 3 str. Ether]
gi|294850955|ref|ZP_06791631.1| crossover junction endodeoxyribonuclease RuvC [Brucella sp. NVSL
07-0026]
gi|297248975|ref|ZP_06932683.1| crossover junction endodeoxyribonuclease RuvC [Brucella abortus bv.
5 str. B3196]
gi|306837834|ref|ZP_07470696.1| crossover junction endodeoxyribonuclease RuvC [Brucella sp. NF
2653]
gi|306841423|ref|ZP_07474125.1| crossover junction endodeoxyribonuclease RuvC [Brucella sp. BO2]
gi|306844696|ref|ZP_07477281.1| crossover junction endodeoxyribonuclease RuvC [Brucella sp. BO1]
gi|20978747|sp|Q8YIV7|RUVC_BRUME RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|81309381|sp|Q57BH6|RUVC_BRUAB RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|123768482|sp|Q2YRD0|RUVC_BRUA2 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|166231584|sp|A5VS60|RUVC_BRUO2 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|189046058|sp|A9M7K2|RUVC_BRUC2 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|238689393|sp|B2S7E1|RUVC_BRUA1 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|254767463|sp|C0REW7|RUVC_BRUMB RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|17982228|gb|AAL51513.1| crossover junction endodeoxyribonuclease ruvc [Brucella melitensis
bv. 1 str. 16M]
gi|62196708|gb|AAX75008.1| RuvC, crossover junction endodeoxyribonuclease [Brucella abortus
bv. 1 str. 9-941]
gi|82616593|emb|CAJ11672.1| Crossover junction endodeoxyribonuclease RuvC [Brucella melitensis
biovar Abortus 2308]
gi|148371600|gb|ABQ61579.1| crossover junction endodeoxyribonuclease RuvC [Brucella ovis ATCC
25840]
gi|161336444|gb|ABX62749.1| crossover junction endodeoxyribonuclease RuvC [Brucella canis ATCC
23365]
gi|189020366|gb|ACD73088.1| Crossover junction endodeoxyribonuclease RuvC [Brucella abortus
S19]
gi|225616119|gb|EEH13167.1| crossover junction endodeoxyribonuclease RuvC [Brucella ceti str.
Cudo]
gi|225641525|gb|ACO01439.1| crossover junction endodeoxyribonuclease RuvC [Brucella melitensis
ATCC 23457]
gi|237788744|gb|EEP62956.1| crossover junction endodeoxyribonuclease RuvC [Brucella abortus
str. 2308 A]
gi|239825058|gb|EEQ96626.1| crossover junction endodeoxyribonuclease RuvC [Ochrobactrum
intermedium LMG 3301]
gi|256000276|gb|ACU48675.1| Holliday junction resolvase [Brucella microti CCM 4915]
gi|260095545|gb|EEW79423.1| crossover junction endodeoxyribonuclease ruvC [Brucella abortus
NCTC 8038]
gi|260151168|gb|EEW86263.1| crossover junction endodeoxyribonuclease ruvC [Brucella melitensis
bv. 1 str. 16M]
gi|260154173|gb|EEW89255.1| crossover junction endodeoxyribonuclease ruvC [Brucella suis bv. 4
str. 40]
gi|260668944|gb|EEX55884.1| crossover junction endodeoxyribonuclease ruvC [Brucella abortus bv.
4 str. 292]
gi|260672884|gb|EEX59705.1| crossover junction endodeoxyribonuclease ruvC [Brucella abortus bv.
2 str. 86/8/59]
gi|260675512|gb|EEX62333.1| crossover junction endodeoxyribonuclease ruvC [Brucella abortus bv.
6 str. 870]
gi|260873947|gb|EEX81016.1| crossover junction endodeoxyribonuclease ruvC [Brucella abortus bv.
9 str. C68]
gi|260924383|gb|EEX90951.1| crossover junction endodeoxyribonuclease ruvC [Brucella ceti
M13/05/1]
gi|261295045|gb|EEX98541.1| crossover junction endodeoxyribonuclease ruvC [Brucella ceti
M644/93/1]
gi|261295433|gb|EEX98929.1| crossover junction endodeoxyribonuclease ruvC [Brucella
pinnipedialis B2/94]
gi|261301725|gb|EEY05222.1| crossover junction endodeoxyribonuclease ruvC [Brucella neotomae
5K33]
gi|261304953|gb|EEY08450.1| crossover junction endodeoxyribonuclease ruvC [Brucella
pinnipedialis M163/99/10]
gi|261737342|gb|EEY25338.1| crossover junction endodeoxyribonuclease ruvC [Brucella sp. F5/99]
gi|261740613|gb|EEY28539.1| crossover junction endodeoxyribonuclease ruvC [Brucella suis bv. 5
str. 513]
gi|261743866|gb|EEY31792.1| crossover junction endodeoxyribonuclease ruvC [Brucella suis bv. 3
str. 686]
gi|262766860|gb|EEZ12478.1| crossover junction endodeoxyribonuclease ruvC [Brucella melitensis
bv. 3 str. Ether]
gi|263002695|gb|EEZ15098.1| crossover junction endodeoxyribonuclease ruvC [Brucella melitensis
bv. 1 str. Rev.1]
gi|263093348|gb|EEZ17417.1| crossover junction endodeoxyribonuclease ruvC [Brucella melitensis
bv. 2 str. 63/9]
gi|264659469|gb|EEZ29730.1| crossover junction endodeoxyribonuclease ruvC [Brucella
pinnipedialis M292/94/1]
gi|264663314|gb|EEZ33575.1| crossover junction endodeoxyribonuclease ruvC [Brucella sp. 83/13]
gi|294821598|gb|EFG38594.1| crossover junction endodeoxyribonuclease RuvC [Brucella sp. NVSL
07-0026]
gi|297174108|gb|EFH33465.1| crossover junction endodeoxyribonuclease RuvC [Brucella abortus bv.
5 str. B3196]
gi|306274868|gb|EFM56638.1| crossover junction endodeoxyribonuclease RuvC [Brucella sp. BO1]
gi|306288529|gb|EFM59881.1| crossover junction endodeoxyribonuclease RuvC [Brucella sp. BO2]
gi|306407073|gb|EFM63290.1| crossover junction endodeoxyribonuclease RuvC [Brucella sp. NF
2653]
gi|326409717|gb|ADZ66782.1| Crossover junction endodeoxyribonuclease RuvC [Brucella melitensis
M28]
gi|326539424|gb|ADZ87639.1| crossover junction endodeoxyribonuclease RuvC [Brucella melitensis
M5-90]
Length = 173
Score = 144 bits (364), Expect = 3e-33, Method: Composition-based stats.
Identities = 106/160 (66%), Positives = 130/160 (81%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M+++IRIIGIDPGLRRTGWGIV+ G++L F+ SGT+ S LA RLCQL+EGL+ V+
Sbjct: 1 MKETIRIIGIDPGLRRTGWGIVESLGNSLHFIGSGTVTSNAEMDLASRLCQLHEGLSKVL 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
+ P EAAVE FVNKDA ATLKLGQAR IA+L+PA A +PV+EYAPN +KKAVIGVGH
Sbjct: 61 HEFMPHEAAVEHTFVNKDATATLKLGQARGIALLAPAQAGLPVAEYAPNAVKKAVIGVGH 120
Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
G+K+QIHMM+K+LMP + F DAADALAIA+CHA+H S
Sbjct: 121 GEKQQIHMMVKVLMPRASFDTSDAADALAIAICHAHHRQS 160
>gi|85059238|ref|YP_454940.1| Holliday junction resolvase [Sodalis glossinidius str. 'morsitans']
gi|123725411|sp|Q2NTJ0|RUVC_SODGM RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|84779758|dbj|BAE74535.1| crossover junction endodeoxyribonuclease [Sodalis glossinidius str.
'morsitans']
Length = 173
Score = 144 bits (364), Expect = 3e-33, Method: Composition-based stats.
Identities = 53/135 (39%), Positives = 81/135 (60%), Gaps = 1/135 (0%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
I+GIDPG R TG+GIV G L ++ SG I + L RL +Y G++++I ++P+
Sbjct: 4 ILGIDPGSRITGYGIVRQEGCKLTYLGSGCIRT-KVDDLPARLKLIYAGVSEIITQFQPD 62
Query: 67 EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
A+EQVF+ K+A + LKLGQAR +AI+ +PV EYA +K+ V+G G +K Q+
Sbjct: 63 CLAIEQVFMAKNADSALKLGQARGVAIVVAMNLDLPVFEYAARQVKQTVVGSGAAEKSQV 122
Query: 127 HMMLKMLMPESFFKG 141
M++ L+
Sbjct: 123 QHMVRTLLKLPANPQ 137
>gi|187251559|ref|YP_001876041.1| crossover junction endodeoxyribonuclease RuvC [Elusimicrobium
minutum Pei191]
gi|186971719|gb|ACC98704.1| Crossover junction endodeoxyribonuclease RuvC [Elusimicrobium
minutum Pei191]
Length = 189
Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats.
Identities = 45/150 (30%), Positives = 79/150 (52%), Gaps = 2/150 (1%)
Query: 7 IIGIDPGLRRTGWGIV-DVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
++GIDPGL RTGW I+ N+ + G I S +L RL ++ + + + ++P
Sbjct: 9 VLGIDPGLDRTGWAILTRDKNSNIRLTACGLIHSSKDSALPERLEYIFNEIGKLAEAYKP 68
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
A+E++F K A+ + Q R + +L+ L + ++ Y+P +K + G G K Q
Sbjct: 69 NHVAMEEMFFLKRAITVSQTIQTRGVILLAAHLKGLNINSYSPKKVKSVICGSGTAGKAQ 128
Query: 126 IHMMLKMLMPE-SFFKGKDAADALAIAVCH 154
I M+++ + + D ADA+AI +CH
Sbjct: 129 IQRMVQLTLKLTKKPEPDDVADAIAIGICH 158
>gi|229586357|ref|YP_002844858.1| Holliday junction resolvase [Rickettsia africae ESF-5]
gi|259495693|sp|C3PMF5|RUVC_RICAE RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|228021407|gb|ACP53115.1| Crossover junction endodeoxyribonuclease RuvC [Rickettsia africae
ESF-5]
Length = 157
Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats.
Identities = 54/150 (36%), Positives = 84/150 (56%), Gaps = 1/150 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ I+GIDP L GW +V L +++SG I + + ++ RL + L VI ++
Sbjct: 1 MIILGIDPALGSLGWAVVAKENAQLKYLASGIIRTNSKDAIHHRLAFINSTLEKVILEYQ 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P AA+E+ FVN ++V +LKLG AR + + + E+ PNT+KK V G GH +K
Sbjct: 61 PNMAAIEETFVNTNSVTSLKLGYARGAIMSLIGRYNLDMREFKPNTVKKTVTGYGHAEKD 120
Query: 125 QIHMMLKMLMPESF-FKGKDAADALAIAVC 153
Q+ M+K+L+ + D ADA+AIA
Sbjct: 121 QMLHMIKLLLSGTALITNSDEADAVAIAYT 150
>gi|238751589|ref|ZP_04613079.1| Crossover junction endodeoxyribonuclease ruvC [Yersinia rohdei ATCC
43380]
gi|238710151|gb|EEQ02379.1| Crossover junction endodeoxyribonuclease ruvC [Yersinia rohdei ATCC
43380]
Length = 173
Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats.
Identities = 51/136 (37%), Positives = 82/136 (60%), Gaps = 1/136 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
++GIDPG R TG+G++ G L ++ SG I + V + RL +Y G+T++I ++P
Sbjct: 3 IVLGIDPGSRVTGYGVIHQQGRQLTYLGSGCIRTVV-DDMPTRLKLIYAGVTEIITQFQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQVF+ K+ + LKLGQAR AI++ +PVSEYA +K+ V+G G +K Q
Sbjct: 62 DFFAIEQVFMAKNPDSALKLGQARGAAIVAAVNLNLPVSEYAARQVKQTVVGTGAAEKSQ 121
Query: 126 IHMMLKMLMPESFFKG 141
+ M++ L+
Sbjct: 122 VQHMVRSLLKLPANPQ 137
>gi|81313057|sp|Q5L6Z4|RUVC_CHLAB RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|62147830|emb|CAH63576.1| putative crossover junction endodeoxyribonuclease RuvC
[Chlamydophila abortus S26/3]
Length = 165
Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats.
Identities = 55/156 (35%), Positives = 89/156 (57%), Gaps = 4/156 (2%)
Query: 7 IIGIDPGLRRTGWGIVDVAGD-NLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG +G+ I+ V + S G I + SL R QL++ L+ V+ N P
Sbjct: 2 IMGIDPGTLVSGYAIILVEQRYKIRAHSYGAIRLSSKDSLTQRYKQLFQTLSGVLDNVTP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ +E +V+K+ + +KLG R + +L+ AL IPV EY PN K+AV+G G+ K+Q
Sbjct: 62 DAVVLETQYVHKNPQSAIKLGMGRGVLVLAAALRDIPVFEYTPNVAKRAVVGKGNASKQQ 121
Query: 126 IHMMLKMLMPESFFKG---KDAADALAIAVCHAYHA 158
+ +M+ ++ +D ADA A+A+CHA+ +
Sbjct: 122 VQLMVSKILNIPDVLNSDCEDIADAFALAICHAHTS 157
>gi|157964183|ref|YP_001499007.1| Holliday junction resolvase [Rickettsia massiliae MTU5]
gi|157843959|gb|ABV84460.1| Crossover junction endodeoxyribonuclease RuvC [Rickettsia massiliae
MTU5]
Length = 159
Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats.
Identities = 56/150 (37%), Positives = 85/150 (56%), Gaps = 1/150 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ I+GIDP L GW +V L +++SG I + + ++ RL + L VI ++
Sbjct: 3 MIILGIDPALGSLGWAVVAKETAQLKYLASGIIKTNSKDAIHHRLAFINSTLEKVILEYQ 62
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P AA+E+ FVN ++V +LKLG AR + + + E+ PNT+KK V G GH +K
Sbjct: 63 PNMAAIEETFVNTNSVTSLKLGYARGAIMSLIGRYNLDMREFKPNTVKKTVTGYGHAEKD 122
Query: 125 QIHMMLKMLMPES-FFKGKDAADALAIAVC 153
QI M+K+L+P + D ADA+AIA
Sbjct: 123 QILHMIKLLLPGTFLITNSDEADAVAIAYT 152
>gi|239907720|ref|YP_002954461.1| crossover junction endodeoxyribonuclease RuvC [Desulfovibrio
magneticus RS-1]
gi|259495684|sp|C4XIK0|RUVC_DESMR RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|239797586|dbj|BAH76575.1| crossover junction endodeoxyribonuclease RuvC [Desulfovibrio
magneticus RS-1]
Length = 169
Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats.
Identities = 55/154 (35%), Positives = 85/154 (55%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+G+DPG R TG+G+V L V +G + + + RL ++ + ++I+ P
Sbjct: 8 IILGLDPGSRATGYGLVRERSGVLELVDAGVVRTTSQPDFPSRLGVIFTAVAELIQRHGP 67
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
E +VE VFV+K+A LKLGQAR A+ + A+A + V Y P IK++++G G +K Q
Sbjct: 68 AEVSVENVFVSKNAATALKLGQARGAALAACAVAGLSVHSYEPTVIKQSLVGTGRAEKSQ 127
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHAN 159
+ M+ ++ DA DALA AVCH
Sbjct: 128 VAFMVARVLACRETFAVDATDALAAAVCHLNQRR 161
>gi|89256281|ref|YP_513643.1| Holliday junction resolvase [Francisella tularensis subsp.
holarctica LVS]
gi|115314733|ref|YP_763456.1| Holliday junction resolvase [Francisella tularensis subsp.
holarctica OSU18]
gi|156502347|ref|YP_001428412.1| Holliday junction resolvase [Francisella tularensis subsp.
holarctica FTNF002-00]
gi|167011089|ref|ZP_02276020.1| holliday junction endodeoxyribonuclease [Francisella tularensis
subsp. holarctica FSC200]
gi|254367616|ref|ZP_04983637.1| holliday junction endodeoxyribonuclease [Francisella tularensis
subsp. holarctica 257]
gi|254369264|ref|ZP_04985276.1| holliday junction endodeoxyribonuclease [Francisella tularensis
subsp. holarctica FSC022]
gi|290953116|ref|ZP_06557737.1| Holliday junction resolvase [Francisella tularensis subsp.
holarctica URFT1]
gi|295313644|ref|ZP_06804228.1| Holliday junction resolvase [Francisella tularensis subsp.
holarctica URFT1]
gi|122325246|sp|Q0BM65|RUVC_FRATO RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|122999753|sp|Q2A3Q9|RUVC_FRATH RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|166233192|sp|A7NBV3|RUVC_FRATF RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|89144112|emb|CAJ79369.1| holliday junction endodeoxyribonuclease [Francisella tularensis
subsp. holarctica LVS]
gi|115129632|gb|ABI82819.1| crossover junction endodeoxyribonuclease [Francisella tularensis
subsp. holarctica OSU18]
gi|134253427|gb|EBA52521.1| holliday junction endodeoxyribonuclease [Francisella tularensis
subsp. holarctica 257]
gi|156252950|gb|ABU61456.1| crossover junction endodeoxyribonuclease [Francisella tularensis
subsp. holarctica FTNF002-00]
gi|157122214|gb|EDO66354.1| holliday junction endodeoxyribonuclease [Francisella tularensis
subsp. holarctica FSC022]
Length = 171
Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats.
Identities = 65/164 (39%), Positives = 104/164 (63%), Gaps = 2/164 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ I+GIDPG R TG+G++ V + + +V+SG I + RL Q+ +G+T +I +
Sbjct: 1 MVILGIDPGSRITGFGVIKVQDNKIYYVASGCIQ-ITEITTPKRLKQIADGITQIINIYA 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P EAA+EQ+F+ ++ + +KLGQAR +A+ + A+ + VSEY+ IK+AV+G G K
Sbjct: 60 PTEAAIEQIFMFQNPMGAIKLGQARGVAMCTLAINNLEVSEYSAKQIKQAVVGTGGAAKS 119
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
Q+ M++ L+ S +DAADALAIA+CH + + S KI+
Sbjct: 120 QVQHMVQSLLGLSKKPPEDAADALAIAICHYHSSKS-LAKISGA 162
>gi|241563433|ref|XP_002401702.1| crossover junction endodeoxyribonuclease ruvC, putative [Ixodes
scapularis]
gi|215501894|gb|EEC11388.1| crossover junction endodeoxyribonuclease ruvC, putative [Ixodes
scapularis]
Length = 159
Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats.
Identities = 56/156 (35%), Positives = 86/156 (55%), Gaps = 1/156 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ ++GIDP L GW +V L +++SG I + + + RL + L VI ++
Sbjct: 3 MIVLGIDPALGSLGWAVVAKETAKLKYLASGIIKTNSKDEIHHRLAFINSTLEKVILEYQ 62
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P AA+E+ FVN ++V +LKLG AR + + + E+ PNT+KK V G GH +K
Sbjct: 63 PNMAAIEETFVNTNSVTSLKLGYARGAIMSLIGRYNLGLREFKPNTVKKTVTGYGHAEKD 122
Query: 125 QIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHAN 159
QI M+K+L+P S D AD++AIA + N
Sbjct: 123 QILHMIKLLLPGTSLITNSDEADSVAIAYTYLVTKN 158
>gi|208779420|ref|ZP_03246766.1| crossover junction endodeoxyribonuclease RuvC [Francisella novicida
FTG]
gi|208745220|gb|EDZ91518.1| crossover junction endodeoxyribonuclease RuvC [Francisella novicida
FTG]
Length = 171
Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats.
Identities = 66/164 (40%), Positives = 105/164 (64%), Gaps = 2/164 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ I+GIDPG R TG+G++ V + + +V+SG I + A RL Q+ +G+T +I +
Sbjct: 1 MVILGIDPGSRITGFGVIKVQDNKIYYVASGCIR-ITEITTAKRLKQIADGITQIINIYA 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P EAA+EQ+F+ ++ + +KLGQAR +A+ + A+ + VSEY+ IK+AV+G G K
Sbjct: 60 PTEAAIEQIFMFQNPMGAIKLGQARGVAMCTLAINNLEVSEYSAKQIKQAVVGTGGAAKS 119
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
Q+ M++ L+ S +DAADALAIA+CH + + S KI+
Sbjct: 120 QVQHMVQSLLGLSKKPPEDAADALAIAICHYHSSKS-LAKISGA 162
>gi|49474678|ref|YP_032720.1| Holliday junction resolvase [Bartonella quintana str. Toulouse]
gi|81646801|sp|Q6FYP4|RUVC_BARQU RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|49240182|emb|CAF26648.1| Holliday junction nuclease ruvC [Bartonella quintana str. Toulouse]
Length = 169
Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats.
Identities = 92/139 (66%), Positives = 116/139 (83%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M ++IRIIGIDPGLRRTGWG++D +G+ L FV++GT+ S R LA RLCQLY+GL+D++
Sbjct: 1 MAETIRIIGIDPGLRRTGWGVIDFSGNRLQFVAAGTLSSDARCDLASRLCQLYKGLSDIL 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
+ P EAAVE VFVNKDA ATLKLGQARAIA+L+PA A +PV EYAPN +KK+VIGVGH
Sbjct: 61 HQFMPHEAAVEHVFVNKDATATLKLGQARAIALLAPAQANLPVFEYAPNKVKKSVIGVGH 120
Query: 121 GDKKQIHMMLKMLMPESFF 139
G K+QIHMM+K+L+P + F
Sbjct: 121 GAKEQIHMMVKVLLPRAEF 139
>gi|126725531|ref|ZP_01741373.1| Holliday junction resolvase [Rhodobacterales bacterium HTCC2150]
gi|126704735|gb|EBA03826.1| Holliday junction resolvase [Rhodobacterales bacterium HTCC2150]
Length = 164
Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats.
Identities = 79/158 (50%), Positives = 108/158 (68%), Gaps = 1/158 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+R++GIDPGL GWG++DV G L V++G + V L RL L++ L+ V++ +
Sbjct: 1 MRVLGIDPGLGNLGWGVIDVDGSRLSHVANGVCKTKVG-DLGPRLLSLFDQLSAVVEKYA 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ AAVEQ FVNKD +LKLGQAR IA+L PA A + + EYAPN +KK V+GVGH DKK
Sbjct: 60 PDTAAVEQTFVNKDGAGSLKLGQARGIAVLVPARAGLEIGEYAPNKVKKTVVGVGHADKK 119
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGY 162
Q+ M+K+ +P G DAADALAIA+CHA++ +
Sbjct: 120 QVQHMVKIQLPGVELTGPDAADALAIAICHAHYGQNSN 157
>gi|319899374|ref|YP_004159471.1| Holliday junction nuclease ruvC [Bartonella clarridgeiae 73]
gi|319403342|emb|CBI76901.1| Holliday junction nuclease ruvC [Bartonella clarridgeiae 73]
Length = 169
Score = 144 bits (363), Expect = 4e-33, Method: Composition-based stats.
Identities = 103/168 (61%), Positives = 135/168 (80%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M ++IRIIGIDPGLR TGWG++D+ G++L FV++GT+ S + +LA RLCQLYEGL+ V+
Sbjct: 1 MVETIRIIGIDPGLRHTGWGVIDLCGNHLHFVAAGTLHSKPQNNLASRLCQLYEGLSKVV 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
+ P EAAVE VFVNKDA ATLKLGQARAIA+L PA +P+SEYAPN +KK+VIGVGH
Sbjct: 61 HEFMPHEAAVEHVFVNKDAAATLKLGQARAIALLVPAQKGLPISEYAPNKVKKSVIGVGH 120
Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
G+K+QIHMM+K+L+P + F DAADALA+A+CH+ H S Y++ +
Sbjct: 121 GEKEQIHMMVKILLPRAEFDSSDAADALALAICHSTHRTSTSYRLKAS 168
>gi|74311807|ref|YP_310226.1| Holliday junction resolvase [Shigella sonnei Ss046]
gi|110287674|sp|Q3Z2M1|RUVC_SHISS RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|73855284|gb|AAZ87991.1| Holliday junction nuclease [Shigella sonnei Ss046]
gi|323165013|gb|EFZ50803.1| crossover junction endodeoxyribonuclease RuvC [Shigella sonnei 53G]
Length = 173
Score = 144 bits (363), Expect = 4e-33, Method: Composition-based stats.
Identities = 51/136 (37%), Positives = 82/136 (60%), Gaps = 1/136 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R G+G++ G L ++ SG I + L RL +Y G+T++I ++P
Sbjct: 3 IILGIDPGSRVIGYGVIRQVGRQLSYLGSGCIRT-KVDDLPSRLKLIYAGVTEIITQFQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQVF+ K+A + LKLGQAR +AI++ +PV EYA +K+ V+G+G +K Q
Sbjct: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121
Query: 126 IHMMLKMLMPESFFKG 141
+ M++ L+
Sbjct: 122 VQHMVRTLLKLPANPQ 137
>gi|325971234|ref|YP_004247425.1| Crossover junction endodeoxyribonuclease ruvC [Spirochaeta sp.
Buddy]
gi|324026472|gb|ADY13231.1| Crossover junction endodeoxyribonuclease ruvC [Spirochaeta sp.
Buddy]
Length = 163
Score = 144 bits (363), Expect = 4e-33, Method: Composition-based stats.
Identities = 45/143 (31%), Positives = 73/143 (51%), Gaps = 1/143 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPG +TGWG+V+ G + VS G I + Q R+ + + + + +
Sbjct: 1 MRILGIDPGYAQTGWGVVESDGQHNRPVSFGVIKTSPTQPDCERIHFIAKSIGALALENK 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
+E +F K+ + + + + I AL IPV Y+P TIK AV G G +K
Sbjct: 61 VTICGMEDIFFTKNVSSAIPVAKVIGACIHQLALLEIPVRLYSPPTIKSAVTGYGGAEKH 120
Query: 125 QIHMMLKMLMP-ESFFKGKDAAD 146
Q+ M+++L+ E K A+D
Sbjct: 121 QVQEMVRILLGFEKIPKPDHASD 143
>gi|90580115|ref|ZP_01235923.1| Holliday junction resolvase [Vibrio angustum S14]
gi|90439000|gb|EAS64183.1| Holliday junction resolvase [Vibrio angustum S14]
Length = 173
Score = 144 bits (363), Expect = 4e-33, Method: Composition-based stats.
Identities = 67/163 (41%), Positives = 104/163 (63%), Gaps = 2/163 (1%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G NL ++ SG I + + RL Q+Y G+++VI ++P
Sbjct: 3 IILGIDPGSRITGYGVIRQVGRNLEYLGSGCIRTS-EPGIPGRLKQIYAGVSEVITQFQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+E+VF+ K+A + +KLGQAR AI++ A +PVSEYA IK+AV+G G DK Q
Sbjct: 62 DFFAIEEVFMGKNASSAIKLGQARGSAIVAAVNADLPVSEYAARLIKQAVVGNGGADKAQ 121
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
+ M+ ++ + DAADALA+A+CHA+ + +A +
Sbjct: 122 VQHMVCSVLKLAGKPQADAADALAVAICHAHTYKT-LVAMAGK 163
>gi|262370333|ref|ZP_06063659.1| crossover junction endodeoxyribonuclease RuvC [Acinetobacter
johnsonii SH046]
gi|262314675|gb|EEY95716.1| crossover junction endodeoxyribonuclease RuvC [Acinetobacter
johnsonii SH046]
Length = 181
Score = 144 bits (363), Expect = 5e-33, Method: Composition-based stats.
Identities = 69/160 (43%), Positives = 100/160 (62%), Gaps = 2/160 (1%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
IIGIDPG R TG+GI+ G L FV +GTI + + RL +++ G+ ++K P
Sbjct: 4 IIGIDPGSRLTGYGIIQKEGQKLIFVDAGTIRTEA-ADMPERLKRIFAGIDRIVKFHGPT 62
Query: 67 EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
EAAVEQVF+ ++ + LKLGQAR AI + + V+EY IK++V+G G DK+Q+
Sbjct: 63 EAAVEQVFMAQNPDSALKLGQARGAAIAALVNLDLQVAEYTARQIKQSVVGYGAADKEQV 122
Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
+M+ L+ S +DAADALA A+CHA+ + S K+A
Sbjct: 123 QIMVMRLLNLSIKPQQDAADALAAAICHAHASGS-MTKLA 161
>gi|260912902|ref|ZP_05919387.1| crossover junction endodeoxyribonuclease RuvC [Pasteurella dagmatis
ATCC 43325]
gi|260632892|gb|EEX51058.1| crossover junction endodeoxyribonuclease RuvC [Pasteurella dagmatis
ATCC 43325]
Length = 190
Score = 144 bits (363), Expect = 5e-33, Method: Composition-based stats.
Identities = 64/158 (40%), Positives = 100/158 (63%), Gaps = 1/158 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G L ++ SG I + V + L RL ++Y G++++I ++P
Sbjct: 3 IILGIDPGSRVTGYGVIRQTGRQLEYLGSGVIRTSV-EDLPTRLKRIYSGVSEIILQFQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
E A+E+VF+ K+A + LKLGQAR AI++ +PV EYA +K+ V+G+G DK Q
Sbjct: 62 EMFAIEEVFLAKNANSALKLGQARGAAIVAAVNQNLPVFEYAARLVKQTVVGIGSADKIQ 121
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYY 163
+ M+ ++ S DAADALAIA+ HA+ ++
Sbjct: 122 VQDMVTRILKLSEKPQADAADALAIAITHAHSIQHSFH 159
>gi|119504257|ref|ZP_01626337.1| Crossover junction endodeoxyribonuclease RuvC [marine gamma
proteobacterium HTCC2080]
gi|119459765|gb|EAW40860.1| Crossover junction endodeoxyribonuclease RuvC [marine gamma
proteobacterium HTCC2080]
Length = 172
Score = 144 bits (363), Expect = 5e-33, Method: Composition-based stats.
Identities = 63/154 (40%), Positives = 91/154 (59%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
I+GIDPG R+TG+G++ G +V+SG I V Q+L RL L+ L +I + P+
Sbjct: 4 ILGIDPGSRKTGFGVIRTEGKAAVYVTSGIIRLPVDQALGPRLGVLFSSLNSIIDEFNPD 63
Query: 67 EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
E A+E+VFV ++ A LKLG AR A+ + V EYA IK AV+G G K+Q+
Sbjct: 64 ELAIEEVFVARNPGAALKLGHARGAAMAVCVHRGMHVYEYAARQIKLAVVGTGAASKEQV 123
Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
M+K+L+ +DAAD LA A+CH + + S
Sbjct: 124 QHMVKVLLKLPAAPKEDAADGLAAALCHLHSSQS 157
>gi|220935404|ref|YP_002514303.1| Crossover junction endodeoxyribonuclease [Thioalkalivibrio sp.
HL-EbGR7]
gi|219996714|gb|ACL73316.1| Crossover junction endodeoxyribonuclease [Thioalkalivibrio sp.
HL-EbGR7]
Length = 179
Score = 144 bits (363), Expect = 5e-33, Method: Composition-based stats.
Identities = 66/156 (42%), Positives = 99/156 (63%), Gaps = 1/156 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPG TG+GIVD G V SG I + L RL ++++ ++ +++ R
Sbjct: 1 MRILGIDPGSLVTGFGIVDSDGRRSVHVHSGCIRV-KGEDLVVRLGRIFDEVSLLVETHR 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
PE A+EQVFV+++ + LKLGQAR AI + A +PVSEY+P +IK+AV+G G K+
Sbjct: 60 PEVLAIEQVFVSRNPSSALKLGQARGAAICAGVRAGLPVSEYSPTSIKQAVVGTGAASKE 119
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
Q+ M+ M++ D ADALA+A+CHA+ +
Sbjct: 120 QVQHMITMILSLKDAPAADQADALAVALCHAHTQAT 155
>gi|256391547|ref|YP_003113111.1| crossover junction endodeoxyribonuclease RuvC [Catenulispora
acidiphila DSM 44928]
gi|256357773|gb|ACU71270.1| crossover junction endodeoxyribonuclease RuvC [Catenulispora
acidiphila DSM 44928]
Length = 170
Score = 144 bits (363), Expect = 5e-33, Method: Composition-based stats.
Identities = 54/166 (32%), Positives = 87/166 (52%), Gaps = 3/166 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R++G+DPGL R G G+V+ G L V G I + L+ RL + GL +
Sbjct: 1 MRVLGVDPGLTRCGVGVVEGTPGRPLTLVGVGVIRTPADMDLSRRLLAIETGLEQWLAEH 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
+PE AVE+VF + + QA A+A+L A +PV+ + P+ +K A+ G G K
Sbjct: 61 QPEAVAVERVFSQHNVSTVMGTAQASAVAMLVAARHGLPVALHTPSEVKAAISGSGRAGK 120
Query: 124 KQIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
Q+ M+ ++ K DAADA A+A+CH + + ++A+
Sbjct: 121 DQVATMVARVLRLAEPPKPADAADAAALAICHIWR-GTANSRLAAA 165
>gi|332534228|ref|ZP_08410073.1| crossover junction endodeoxyribonuclease RuvC [Pseudoalteromonas
haloplanktis ANT/505]
gi|332036308|gb|EGI72779.1| crossover junction endodeoxyribonuclease RuvC [Pseudoalteromonas
haloplanktis ANT/505]
Length = 174
Score = 143 bits (362), Expect = 6e-33, Method: Composition-based stats.
Identities = 67/163 (41%), Positives = 97/163 (59%), Gaps = 2/163 (1%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G+V G ++ SG I RL +Y+G+T +I+ + P
Sbjct: 3 IILGIDPGSRLTGYGVVAHQGSKFTYLGSGCIKL-ADHPFPVRLKMIYQGITQLIEQFSP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
E A+E+VF+ + + LKLGQAR AI+ A+A +PV EY+ IK+AV+G G DK Q
Sbjct: 62 ETFAIEKVFMAHNPDSALKLGQARGAAIVGAAMADLPVFEYSARQIKQAVVGNGGADKTQ 121
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
+ M+K ++ DAADALAIA+CHA+ + K+A
Sbjct: 122 VQHMVKNILKLPGTPQADAADALAIAICHAHSEQN-LIKLAGS 163
>gi|301631770|ref|XP_002944968.1| PREDICTED: uncharacterized protein aq_1259-like [Xenopus (Silurana)
tropicalis]
Length = 587
Score = 143 bits (362), Expect = 6e-33, Method: Composition-based stats.
Identities = 60/140 (42%), Positives = 89/140 (63%), Gaps = 7/140 (5%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVS------CVRQSLAFRLCQLYEGLTD 58
+RI+GIDPGL+ TG+G++DV G +L +V+SGTI + L RL L++G+T+
Sbjct: 1 MRILGIDPGLQTTGFGVLDVQGQHLRYVASGTIRTTGAGAAPALGDLPGRLKLLFDGITE 60
Query: 59 VIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGV 118
V ++P+ AAVE VFVN + +TL LGQAR A+ + AR+PV+EY +KKAV+G
Sbjct: 61 VAARYQPDTAAVEIVFVNVNPQSTLLLGQARGAALTALVNARLPVAEYTALQMKKAVVGH 120
Query: 119 GHGDKKQIHMMLKMLMPESF 138
G K Q+ M + L+ +
Sbjct: 121 GRAAKAQVQEM-RALLNQQR 139
>gi|238754859|ref|ZP_04616209.1| Crossover junction endodeoxyribonuclease ruvC [Yersinia ruckeri
ATCC 29473]
gi|238706870|gb|EEP99237.1| Crossover junction endodeoxyribonuclease ruvC [Yersinia ruckeri
ATCC 29473]
Length = 177
Score = 143 bits (362), Expect = 6e-33, Method: Composition-based stats.
Identities = 53/142 (37%), Positives = 85/142 (59%), Gaps = 2/142 (1%)
Query: 1 MRKSI-RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDV 59
M+ + ++GIDPG R TG+G++ G L ++ SG I + V + RL +Y G+T++
Sbjct: 1 MKIGMAIVLGIDPGSRVTGYGVIRQEGRQLTYLGSGCIRTVV-DDMPTRLKLIYAGVTEI 59
Query: 60 IKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVG 119
I + P+ A+EQVF+ K+A + LKLGQAR AI++ +PVSEYA +K+ V+G G
Sbjct: 60 ITQFHPDFFAIEQVFMAKNADSALKLGQARGAAIVAAVNLDLPVSEYAARQVKQTVVGTG 119
Query: 120 HGDKKQIHMMLKMLMPESFFKG 141
+K Q+ M++ L+
Sbjct: 120 AAEKSQVQHMVRSLLKLPANPQ 141
>gi|218296776|ref|ZP_03497482.1| crossover junction endodeoxyribonuclease RuvC [Thermus aquaticus
Y51MC23]
gi|218242865|gb|EED09399.1| crossover junction endodeoxyribonuclease RuvC [Thermus aquaticus
Y51MC23]
Length = 166
Score = 143 bits (362), Expect = 6e-33, Method: Composition-based stats.
Identities = 43/164 (26%), Positives = 83/164 (50%), Gaps = 4/164 (2%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGD---NLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
+ ++G+DPG+ G G+V+ + + + ++ R+ +++ + +
Sbjct: 1 MIVLGVDPGITHLGLGVVEAEEKGALKARLLHGEVVRTSHKEKAEARVGRIHARAKEALL 60
Query: 62 NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
+RPE AVE+ F + K+G A +++ A +PV Y P +K+A+ G GH
Sbjct: 61 AFRPEALAVEEQFFYRQNELAYKVGWALGAVLVAAFEAGVPVYAYGPMQVKQALAGHGHA 120
Query: 122 DKKQIHMMLK-MLMPESFFKGKDAADALAIAVCHAYHANSGYYK 164
K+++ +M++ L + + ADALAIA+ HA++A G K
Sbjct: 121 SKEEVALMVRSALGLKETPRPSHLADALAIALTHAFYARLGAAK 164
>gi|3860687|emb|CAA14588.1| CROSSOVER JUNCTION ENDODEOXYRIBONUCLEASE RUVC (ruvC) [Rickettsia
prowazekii]
Length = 169
Score = 143 bits (362), Expect = 6e-33, Method: Composition-based stats.
Identities = 54/150 (36%), Positives = 83/150 (55%), Gaps = 1/150 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ ++GIDP L + GW +V L +++SGTI + + + RL + L VI ++
Sbjct: 13 MIVLGIDPALGKLGWAVVAKESTKLHYLASGTIKTHSKDEIHNRLAFINSILEKVILEYQ 72
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P AA+E+ FVN + V +LKLG AR + + + E+ PNT+KK V G GH K+
Sbjct: 73 PNIAAIEETFVNTNNVTSLKLGYARGAIMSLIGRYNLDMQEFKPNTVKKTVTGYGHAGKE 132
Query: 125 QIHMMLKMLMPESF-FKGKDAADALAIAVC 153
QI M+K L+ + D ADA+A+A
Sbjct: 133 QILYMIKHLISGTDLITNSDEADAVALAYT 162
>gi|317121685|ref|YP_004101688.1| crossover junction endodeoxyribonuclease RuvC [Thermaerobacter
marianensis DSM 12885]
gi|315591665|gb|ADU50961.1| crossover junction endodeoxyribonuclease RuvC [Thermaerobacter
marianensis DSM 12885]
Length = 185
Score = 143 bits (362), Expect = 6e-33, Method: Composition-based stats.
Identities = 52/136 (38%), Positives = 85/136 (62%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
++++GIDPG G+G+V VAG L V+ G I + Q A RL +Y L +++ +R
Sbjct: 1 MQVLGIDPGTATMGFGVVAVAGTTLVPVTYGVIRTPASQPPALRLASIYRDLQELLGRYR 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ AVE++F+ K+ + L +GQAR +A+L+ A A +PV EYAP+ +K+AV+G G K
Sbjct: 61 PQAMAVERLFLQKNRSSALHVGQARGVALLAAAQAGLPVYEYAPHEVKQAVVGYGRASKA 120
Query: 125 QIHMMLKMLMPESFFK 140
Q+ M++ L+ +
Sbjct: 121 QVQRMVQALLGLARPP 136
>gi|262276114|ref|ZP_06053923.1| crossover junction endodeoxyribonuclease RuvC [Grimontia hollisae
CIP 101886]
gi|262219922|gb|EEY71238.1| crossover junction endodeoxyribonuclease RuvC [Grimontia hollisae
CIP 101886]
Length = 173
Score = 143 bits (361), Expect = 7e-33, Method: Composition-based stats.
Identities = 69/163 (42%), Positives = 107/163 (65%), Gaps = 2/163 (1%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G +L ++ SG I + + LA RL Q+Y G+++VI ++P
Sbjct: 3 IILGIDPGSRITGYGVIRHQGSHLEYLGSGCIRTDS-EDLAGRLGQIYAGVSEVITQFQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQVF+ ++A + LKLGQAR AI++ A +PVSEYA IK++V+G G DKKQ
Sbjct: 62 DTFAIEQVFMARNADSALKLGQARGSAIVAAVNAGLPVSEYAARLIKQSVVGKGSADKKQ 121
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
+ M+ ++ DAADALA+A+CHA+ ++ +A +
Sbjct: 122 VQHMVVHMLKLPSTPQADAADALAVAICHAHTNHT-LVAMAGK 163
>gi|311894865|dbj|BAJ27273.1| putative crossover junction endodeoxyribonuclease RuvC
[Kitasatospora setae KM-6054]
Length = 211
Score = 143 bits (361), Expect = 7e-33, Method: Composition-based stats.
Identities = 54/165 (32%), Positives = 89/165 (53%), Gaps = 2/165 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVD-VAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R++G+DPGL R G G+V+ + G L + G + + + RL + +GL + +
Sbjct: 1 MRVLGVDPGLTRCGVGVVEGLPGRRLDMLGVGVVRTPSDDEIGPRLLAIEQGLESWLDRY 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
+PE AVE+VF + + QA A+A+L IPV+ + P+ +K AV G G DK
Sbjct: 61 QPELVAVERVFAQHNVRTVMGTAQASAVAVLCATRRGIPVTLHTPSEVKAAVTGSGRADK 120
Query: 124 KQIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
Q+ M+ ++ + K DAADALA+A+CH + + A+
Sbjct: 121 AQVTAMVTRILRLDAPPKPADAADALALAICHIWRGGTTNRLTAA 165
>gi|154498070|ref|ZP_02036448.1| hypothetical protein BACCAP_02051 [Bacteroides capillosus ATCC
29799]
gi|150273060|gb|EDN00217.1| hypothetical protein BACCAP_02051 [Bacteroides capillosus ATCC
29799]
Length = 186
Score = 143 bits (361), Expect = 7e-33, Method: Composition-based stats.
Identities = 40/139 (28%), Positives = 77/139 (55%), Gaps = 1/139 (0%)
Query: 4 SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
++ I+GIDPG G+G+++ A + G I + L RL Q+ + + +++ +
Sbjct: 7 TMIILGIDPGFAIVGFGVLEAAPGRQRLIRCGAITTPAGLPLPARLLQISDDMATLLRQF 66
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
+P+ AVE++F N++ + + QAR + + A +P+ EY+P+ +K+AV+G G +K
Sbjct: 67 KPDAMAVEELFFNQNVTTGISVAQARGVILTEAERACVPIFEYSPSQVKQAVVGYGKAEK 126
Query: 124 KQIHMMLKMLMPESF-FKG 141
+Q+ M K L+ K
Sbjct: 127 RQVMDMTKRLLGLKDVPKP 145
>gi|331007230|ref|ZP_08330437.1| Crossover junction endodeoxyribonuclease RuvC [gamma
proteobacterium IMCC1989]
gi|330418946|gb|EGG93405.1| Crossover junction endodeoxyribonuclease RuvC [gamma
proteobacterium IMCC1989]
Length = 172
Score = 143 bits (361), Expect = 8e-33, Method: Composition-based stats.
Identities = 49/136 (36%), Positives = 82/136 (60%), Gaps = 1/136 (0%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
I+GIDPG R+TG+G+++ +V+SG I +L RL ++ + +VI+ + P+
Sbjct: 4 ILGIDPGSRKTGFGVINNINGRCEYVASGVIRL-KNDTLPERLKVIFHSVCEVIEEYCPQ 62
Query: 67 EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
+ A+EQVF+ K+A + L LGQAR AI++ + V+EY +K++V+G G DK Q+
Sbjct: 63 QVAIEQVFMAKNANSALILGQARGAAIVAAVSHDLEVAEYEAKKVKQSVVGNGGADKTQV 122
Query: 127 HMMLKMLMPESFFKGK 142
M+K L+ S +
Sbjct: 123 QHMVKQLLKLSGIPQE 138
>gi|241668353|ref|ZP_04755931.1| Holliday junction resolvase [Francisella philomiragia subsp.
philomiragia ATCC 25015]
gi|254876886|ref|ZP_05249596.1| crossover junction endodeoxyribonuclease ruvC [Francisella
philomiragia subsp. philomiragia ATCC 25015]
gi|254842907|gb|EET21321.1| crossover junction endodeoxyribonuclease ruvC [Francisella
philomiragia subsp. philomiragia ATCC 25015]
Length = 171
Score = 143 bits (361), Expect = 8e-33, Method: Composition-based stats.
Identities = 66/164 (40%), Positives = 104/164 (63%), Gaps = 2/164 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ I+GIDPG R TG+GI+ + + L +V+SG I A RL Q+ +G+T+V+ +
Sbjct: 1 MVILGIDPGSRITGFGIIKIHDNKLYYVASGCIR-ITETGTARRLKQIADGITEVVSTYA 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P E+A+EQ+F+ ++ A LKLGQAR +A+ + A+ + VSEY+ IK+AV+G G K
Sbjct: 60 PTESAIEQIFMFQNPGAALKLGQARGVAMCTLAINNLEVSEYSAKQIKQAVVGTGGAAKS 119
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
Q+ M++ ++ S +DAADALAIA+CH + + S +I
Sbjct: 120 QVQHMVQSILGLSKKPPEDAADALAIAICHYHSSKS-LARIVGA 162
>gi|161729090|ref|NP_220511.2| Holliday junction resolvase [Rickettsia prowazekii str. Madrid E]
gi|6685957|sp|Q9ZE29|RUVC_RICPR RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|292571712|gb|ADE29627.1| Crossover junction endodeoxyribonuclease RuvC [Rickettsia
prowazekii Rp22]
Length = 157
Score = 143 bits (361), Expect = 8e-33, Method: Composition-based stats.
Identities = 54/150 (36%), Positives = 83/150 (55%), Gaps = 1/150 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ ++GIDP L + GW +V L +++SGTI + + + RL + L VI ++
Sbjct: 1 MIVLGIDPALGKLGWAVVAKESTKLHYLASGTIKTHSKDEIHNRLAFINSILEKVILEYQ 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P AA+E+ FVN + V +LKLG AR + + + E+ PNT+KK V G GH K+
Sbjct: 61 PNIAAIEETFVNTNNVTSLKLGYARGAIMSLIGRYNLDMQEFKPNTVKKTVTGYGHAGKE 120
Query: 125 QIHMMLKMLMPESF-FKGKDAADALAIAVC 153
QI M+K L+ + D ADA+A+A
Sbjct: 121 QILYMIKHLISGTDLITNSDEADAVALAYT 150
>gi|114321640|ref|YP_743323.1| Holliday junction resolvase [Alkalilimnicola ehrlichii MLHE-1]
gi|122310890|sp|Q0A5Q4|RUVC_ALHEH RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|114228034|gb|ABI57833.1| crossover junction endodeoxyribonuclease RuvC [Alkalilimnicola
ehrlichii MLHE-1]
Length = 165
Score = 143 bits (361), Expect = 8e-33, Method: Composition-based stats.
Identities = 67/164 (40%), Positives = 97/164 (59%), Gaps = 2/164 (1%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
RI+GIDPG R TG+G+V+ +G V+SG + RL LY L++++ RP
Sbjct: 3 RILGIDPGSRITGYGVVEGSGSAPRHVASGCVRLPTG-PFPDRLRVLYRALSELLAQHRP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
E A VEQVFV+++ + LKLGQAR AI + A +PV+EY P IK+A++G G K Q
Sbjct: 62 EAAVVEQVFVSRNPDSALKLGQARGAAICACVNAGLPVAEYTPGEIKQALVGHGRAGKAQ 121
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHAN-SGYYKIASQ 168
+ M++ML+ +DA DALA A+CH + A+ + A
Sbjct: 122 VGYMVRMLLRLDATPAEDAGDALAAALCHLHQADMQARLRRAGA 165
>gi|163846621|ref|YP_001634665.1| Holliday junction resolvase [Chloroflexus aurantiacus J-10-fl]
gi|222524418|ref|YP_002568889.1| Holliday junction resolvase [Chloroflexus sp. Y-400-fl]
gi|226698748|sp|A9WIH6|RUVC_CHLAA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|254767466|sp|B9LAL7|RUVC_CHLSY RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|163667910|gb|ABY34276.1| crossover junction endodeoxyribonuclease RuvC [Chloroflexus
aurantiacus J-10-fl]
gi|222448297|gb|ACM52563.1| crossover junction endodeoxyribonuclease RuvC [Chloroflexus sp.
Y-400-fl]
Length = 164
Score = 143 bits (361), Expect = 8e-33, Method: Composition-based stats.
Identities = 53/138 (38%), Positives = 79/138 (57%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+R +GIDPG GWGIV+ +L + G + + RL QLY GL +I+ R
Sbjct: 1 MRALGIDPGTATMGWGIVEFNNGHLRLIDVGALTTPAGMPHPERLLQLYNGLRAIIERLR 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ AAVE++F K+ L +GQAR +A+L+ A A IPV EY P +K+AV G G DK+
Sbjct: 61 PDTAAVEELFFGKNVNTALTVGQARGVALLALAQAGIPVHEYKPLAVKQAVAGYGGADKR 120
Query: 125 QIHMMLKMLMPESFFKGK 142
Q+ M+++ + +
Sbjct: 121 QMQEMVRLTLGLATIPRP 138
>gi|89075785|ref|ZP_01162173.1| Holliday junction resolvase [Photobacterium sp. SKA34]
gi|89048517|gb|EAR54092.1| Holliday junction resolvase [Photobacterium sp. SKA34]
Length = 173
Score = 143 bits (361), Expect = 9e-33, Method: Composition-based stats.
Identities = 68/163 (41%), Positives = 104/163 (63%), Gaps = 2/163 (1%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G NL ++ SG I + + RL Q+Y G+++VI ++P
Sbjct: 3 IILGIDPGSRITGYGVIRQVGRNLEYLGSGCIRTS-EPGIPGRLKQIYAGVSEVITQFQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+E+VF+ K+A A +KLGQAR AI++ A +PVSEYA IK+AV+G G DK Q
Sbjct: 62 DFFAIEEVFMGKNASAAIKLGQARGSAIVAAVNADLPVSEYAARLIKQAVVGNGGADKAQ 121
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
+ M+ ++ + DAADALA+A+CHA+ + +A +
Sbjct: 122 VQHMVCSVLKLAGKPQADAADALAVAICHAHTHKT-LVAMAGK 163
>gi|104161982|emb|CAJ75691.1| crossover junction endodeoxyribonuclease [uncultured Thermotogales
bacterium]
Length = 168
Score = 143 bits (361), Expect = 9e-33, Method: Composition-based stats.
Identities = 38/142 (26%), Positives = 77/142 (54%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M +R++GIDPG G+G++++ + VS G I + + + RL ++++ L ++
Sbjct: 1 MPACVRVLGIDPGFGTVGYGVLEMRASKIELVSYGAIRTEPDEPIPDRLLKIHDQLERLL 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
+ P+E+AVE++F ++ +++ +AR + +L+ +P+ EY P+ +K AV G G
Sbjct: 61 QECSPDESAVEELFFFRNVTTAIQVSEARGVILLAMRRHEVPIFEYTPHQVKLAVTGYGR 120
Query: 121 GDKKQIHMMLKMLMPESFFKGK 142
+K Q+ LK +
Sbjct: 121 AEKGQVQRTLKAFLRMKETPRP 142
>gi|254694365|ref|ZP_05156193.1| Holliday junction resolvase [Brucella abortus bv. 3 str. Tulya]
gi|261214675|ref|ZP_05928956.1| crossover junction endodeoxyribonuclease ruvC [Brucella abortus bv.
3 str. Tulya]
gi|260916282|gb|EEX83143.1| crossover junction endodeoxyribonuclease ruvC [Brucella abortus bv.
3 str. Tulya]
Length = 173
Score = 143 bits (360), Expect = 9e-33, Method: Composition-based stats.
Identities = 105/160 (65%), Positives = 129/160 (80%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M+++IRIIGIDPGLRRTGWGIV+ G++L F+ SG + S LA RLCQL+EGL+ V+
Sbjct: 1 MKETIRIIGIDPGLRRTGWGIVESLGNSLHFIGSGAVTSNAEMDLASRLCQLHEGLSKVL 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
+ P EAAVE FVNKDA ATLKLGQAR IA+L+PA A +PV+EYAPN +KKAVIGVGH
Sbjct: 61 HEFMPHEAAVEHTFVNKDATATLKLGQARGIALLAPAQAGLPVAEYAPNAVKKAVIGVGH 120
Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
G+K+QIHMM+K+LMP + F DAADALAIA+CHA+H S
Sbjct: 121 GEKQQIHMMVKVLMPRASFDTSDAADALAIAICHAHHRQS 160
>gi|15835403|ref|NP_297162.1| Holliday junction resolvase [Chlamydia muridarum Nigg]
gi|270285582|ref|ZP_06194976.1| Holliday junction resolvase [Chlamydia muridarum Nigg]
gi|270289592|ref|ZP_06195894.1| Holliday junction resolvase [Chlamydia muridarum Weiss]
gi|301336978|ref|ZP_07225180.1| Holliday junction resolvase [Chlamydia muridarum MopnTet14]
gi|13431872|sp|Q9PJN9|RUVC_CHLMU RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|7190817|gb|AAF39592.1| Holliday junction resolvase [Chlamydia muridarum Nigg]
Length = 170
Score = 143 bits (360), Expect = 9e-33, Method: Composition-based stats.
Identities = 54/154 (35%), Positives = 88/154 (57%), Gaps = 4/154 (2%)
Query: 7 IIGIDPGLRRTGWGIVDVAGD-NLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG G+ + V + S G I +Q+L+ R QL+ ++ +++ P
Sbjct: 5 IMGIDPGTLVCGYAFIRVENRYQIQPHSFGKIKLSQKQALSHRYRQLFTEISTILQREAP 64
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ +E +V+K+ +T+KLG AR + +L+ +L I V EYAPNT KKA +G G+ K+Q
Sbjct: 65 KAVVLETQYVHKNPQSTIKLGMARGVLLLAASLQDISVFEYAPNTAKKAAVGKGNASKQQ 124
Query: 126 IHMMLKMLMPESFFKGK---DAADALAIAVCHAY 156
+ +M+ L+ D ADA A+A+CHA+
Sbjct: 125 VQLMVSKLLNIQDLLADDNEDIADAFALAMCHAH 158
>gi|219849467|ref|YP_002463900.1| Holliday junction resolvase [Chloroflexus aggregans DSM 9485]
gi|254767465|sp|B8G4I8|RUVC_CHLAD RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|219543726|gb|ACL25464.1| crossover junction endodeoxyribonuclease RuvC [Chloroflexus
aggregans DSM 9485]
Length = 164
Score = 143 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 53/138 (38%), Positives = 79/138 (57%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+R +GIDPG GWG+V+ G L V G + + RL QLY GL +I+ +
Sbjct: 1 MRALGIDPGTATMGWGVVERDGGVLRLVDVGALTTPAGMPQPERLLQLYNGLRAIIERLQ 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ AAVE++F K+ L +GQAR +A+L+ A A IPV EY P +K+AV G G DK+
Sbjct: 61 PDTAAVEELFFGKNVNTALTVGQARGVALLALAQAGIPVYEYKPTAVKQAVAGYGGADKR 120
Query: 125 QIHMMLKMLMPESFFKGK 142
Q+ M+++ + +
Sbjct: 121 QMQEMVRLTLGLATVPRP 138
>gi|15892082|ref|NP_359796.1| Holliday junction resolvase [Rickettsia conorii str. Malish 7]
gi|20140121|sp|Q92JA8|RUVC_RICCN RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|15619204|gb|AAL02697.1| crossover junction endodeoxyribonuclease RuvC [Rickettsia conorii
str. Malish 7]
Length = 157
Score = 143 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 53/150 (35%), Positives = 83/150 (55%), Gaps = 1/150 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ I+GIDP L GW +V L +++SG I + + ++ RL + L VI ++
Sbjct: 1 MIILGIDPALGSLGWAVVAKETAQLKYLASGIIRTNSKDAIHHRLAFINSTLEKVILEYQ 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P A+E+ FVN ++V +LKLG AR + + + E+ PNT+KK V G GH +K
Sbjct: 61 PNMVAIEETFVNTNSVTSLKLGYARGAIMSLIGRYNLDMREFKPNTVKKTVTGYGHAEKD 120
Query: 125 QIHMMLKMLM-PESFFKGKDAADALAIAVC 153
Q+ M+K+L+ + D ADA+AIA
Sbjct: 121 QMLHMIKLLLSGTALITNSDEADAVAIAYT 150
>gi|269956458|ref|YP_003326247.1| crossover junction endodeoxyribonuclease RuvC [Xylanimonas
cellulosilytica DSM 15894]
gi|269305139|gb|ACZ30689.1| crossover junction endodeoxyribonuclease RuvC [Xylanimonas
cellulosilytica DSM 15894]
Length = 199
Score = 143 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 42/139 (30%), Positives = 70/139 (50%), Gaps = 1/139 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R++G+DPGL R G G+VD G VS G I S S+ RL + L + +
Sbjct: 1 MRVLGVDPGLTRCGVGVVDSLPGRRAQLVSVGVIRSDPAASVDLRLLTVARELDEWLDAH 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
P+ AVE+VF + + Q +A+++ A +PV+ + P+ +K AV G G K
Sbjct: 61 VPDVVAVERVFAQHNVGTVMGTAQVAGLAMVAAARRGVPVALHTPSEVKAAVTGSGRAGK 120
Query: 124 KQIHMMLKMLMPESFFKGK 142
+Q+ M++ L+ +
Sbjct: 121 EQVQRMVQSLLGLAEPPRP 139
>gi|157828031|ref|YP_001494273.1| Holliday junction resolvase [Rickettsia rickettsii str. 'Sheila
Smith']
gi|165932729|ref|YP_001649518.1| Holliday junction resolvase [Rickettsia rickettsii str. Iowa]
gi|166233294|sp|A8GQU0|RUVC_RICRS RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|189046076|sp|B0BW86|RUVC_RICRO RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|157800512|gb|ABV75765.1| Holliday junction resolvase [Rickettsia rickettsii str. 'Sheila
Smith']
gi|165907816|gb|ABY72112.1| crossover junction endodeoxyribonuclease [Rickettsia rickettsii
str. Iowa]
Length = 157
Score = 143 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 54/150 (36%), Positives = 84/150 (56%), Gaps = 1/150 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ I+GIDP L GW +V L +++SG I + + ++ RL + L VI ++
Sbjct: 1 MIILGIDPALGSLGWAVVAKETAQLKYLASGIIRTNSKDAMHHRLAFINSTLEKVILEYQ 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P AA+E+ FVN ++V +LKLG AR + + + E+ PNT+KK V G GH +K
Sbjct: 61 PNMAAIEETFVNTNSVTSLKLGYARGAIMSLIGRYNLDMREFKPNTVKKTVTGYGHAEKD 120
Query: 125 QIHMMLKMLMPESF-FKGKDAADALAIAVC 153
Q+ M+K+L+ + D ADA+AIA
Sbjct: 121 QMLHMIKLLLSGTALITNSDEADAVAIAYT 150
>gi|291544343|emb|CBL17452.1| crossover junction endodeoxyribonuclease RuvC [Ruminococcus sp.
18P13]
Length = 168
Score = 143 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 50/160 (31%), Positives = 90/160 (56%), Gaps = 1/160 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RIIGIDPG G+G++D G + G I++ RL +YE + +++ ++
Sbjct: 1 MRIIGIDPGYAIVGFGVLDYRGVEFTTLEYGAILTEAHTDFPQRLGNIYEDMCFILERFK 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ A+EQ+F + + + QAR + +L+ +P++EY P+ +K+AV+G G +K+
Sbjct: 61 PDALAIEQLFFYSNKTTGIDVAQARGVILLAAVQHGVPIAEYTPSQVKQAVVGYGKAEKR 120
Query: 125 QIHMMLKMLMPES-FFKGKDAADALAIAVCHAYHANSGYY 163
Q+ M + ++ K DAADALA+A+CH + +
Sbjct: 121 QVMEMTRRILHLEQIPKPDDAADALALAICHGHCSRGARS 160
>gi|126732348|ref|ZP_01748148.1| Holliday junction resolvase [Sagittula stellata E-37]
gi|126707217|gb|EBA06283.1| Holliday junction resolvase [Sagittula stellata E-37]
Length = 162
Score = 143 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 83/161 (51%), Positives = 110/161 (68%), Gaps = 1/161 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+R++GIDPGLR GWG+++V G L V++G I LA RL L++ LT V + +
Sbjct: 1 MRVLGIDPGLRHLGWGVIEVDGSRLRHVANG-ICDSEGTDLALRLLSLHDQLTRVFEAYA 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+EAA+E+ FVNKDAV TLKLGQAR +A+L PA + + EYAPN +KK V+GVGH DK
Sbjct: 60 PDEAAIEKTFVNKDAVGTLKLGQARGVALLVPAQFGLSIGEYAPNQVKKTVVGVGHADKN 119
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
QI M+KM +P G DAADALAIA+CHA+ + K+
Sbjct: 120 QILHMVKMQLPGCQPVGPDAADALAIAICHAHQSGVQRMKV 160
>gi|99082213|ref|YP_614367.1| Holliday junction resolvase [Ruegeria sp. TM1040]
gi|99038493|gb|ABF65105.1| crossover junction endodeoxyribonuclease RuvC [Ruegeria sp. TM1040]
Length = 188
Score = 143 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 79/161 (49%), Positives = 111/161 (68%), Gaps = 1/161 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPGLR GWG+++ G L V++G S L RL L+ +T++I +R
Sbjct: 24 MRILGIDPGLRTLGWGVIESNGARLSHVANGLCHSD-GDDLGERLLSLHNQVTEIIDAYR 82
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P++AA+EQ FVNKD TLKLGQAR +A+L+ A A +P EYAPN +KK V+GVGH +K+
Sbjct: 83 PDQAAIEQTFVNKDGAGTLKLGQARGVALLTLAKAGLPTGEYAPNRVKKTVVGVGHAEKE 142
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
Q+ M+K+ +P +G DAADALAIA+CHAY+ S ++
Sbjct: 143 QVLHMVKLQLPGCAPRGADAADALAIAICHAYYGGSNQRQL 183
>gi|332653057|ref|ZP_08418802.1| crossover junction endodeoxyribonuclease RuvC [Ruminococcaceae
bacterium D16]
gi|332518203|gb|EGJ47806.1| crossover junction endodeoxyribonuclease RuvC [Ruminococcaceae
bacterium D16]
Length = 184
Score = 143 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 40/141 (28%), Positives = 73/141 (51%)
Query: 2 RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
S+ I+GIDPG+ G+G++ + G I + L+ RL Q+ + ++I+
Sbjct: 9 EASMIILGIDPGVATIGFGVIKAQRGKNTLIQYGVITTPPGIPLSSRLLQISNDMEELIR 68
Query: 62 NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
+ P+E AVE++F +K+ + + R + +L+ +PV EY P +K+AV G G
Sbjct: 69 TFHPDEMAVEELFFSKNITTGIAVAHGRGVILLAAEKLGVPVFEYTPMQVKQAVAGYGGA 128
Query: 122 DKKQIHMMLKMLMPESFFKGK 142
DK+Q+ +M + L+
Sbjct: 129 DKRQVMLMTQRLLNMKQIPRP 149
>gi|317051310|ref|YP_004112426.1| crossover junction endodeoxyribonuclease RuvC [Desulfurispirillum
indicum S5]
gi|316946394|gb|ADU65870.1| crossover junction endodeoxyribonuclease RuvC [Desulfurispirillum
indicum S5]
Length = 171
Score = 143 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 44/139 (31%), Positives = 77/139 (55%), Gaps = 1/139 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ ++GIDPG R TG+GIV+ G+ L + G I V R+ L +GL +V++
Sbjct: 1 MILLGIDPGTRITGYGIVEARGNQLLHRAHGAIRPPVDLPFPQRMLHLQQGLNEVLREHS 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P +E+VF+ ++ + LKLG AR + +++ + V E + IK++V G G K+
Sbjct: 61 PAHVCIEEVFLAQNPQSALKLGHARGVLMITCLSQGLDVVELSALQIKQSVTGYGKAPKE 120
Query: 125 QIHMMLKMLMPESF-FKGK 142
Q+ M++ML+ + K +
Sbjct: 121 QVGRMVQMLLSLATLPKPE 139
>gi|307298438|ref|ZP_07578241.1| crossover junction endodeoxyribonuclease RuvC [Thermotogales
bacterium mesG1.Ag.4.2]
gi|306915603|gb|EFN45987.1| crossover junction endodeoxyribonuclease RuvC [Thermotogales
bacterium mesG1.Ag.4.2]
Length = 168
Score = 142 bits (359), Expect = 1e-32, Method: Composition-based stats.
Identities = 40/142 (28%), Positives = 79/142 (55%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M +R++GIDPG G+G+V++ + VS G I + ++ + RL ++++ L +++
Sbjct: 1 MPACVRVLGIDPGFGAVGYGVVEMRSSRIDLVSYGAIRTEPQEPIPDRLLKIHDRLEELL 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
+RP+E+AVE++F ++ +++ +AR + +L+ +P+ EY P+ +K AV G G
Sbjct: 61 LEFRPDESAVEELFFFRNVTTAIQVSEARGVILLAMRRHEVPIFEYTPHQVKLAVTGYGR 120
Query: 121 GDKKQIHMMLKMLMPESFFKGK 142
+K Q+ LK
Sbjct: 121 AEKGQVQRTLKTFFRMEVNPRP 142
>gi|261821378|ref|YP_003259484.1| Holliday junction resolvase [Pectobacterium wasabiae WPP163]
gi|261605391|gb|ACX87877.1| crossover junction endodeoxyribonuclease RuvC [Pectobacterium
wasabiae WPP163]
Length = 173
Score = 142 bits (359), Expect = 1e-32, Method: Composition-based stats.
Identities = 55/136 (40%), Positives = 84/136 (61%), Gaps = 1/136 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+GI+ G L ++ SG I + V + RL +Y G++++I +RP
Sbjct: 3 IIVGIDPGSRVTGYGIIRQQGRQLTYLGSGCIRTVV-DDMPTRLKLIYAGVSEIITQFRP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQVF+ K+ + LKLGQAR +AI++ +PV EYA +K+ V+G G DKKQ
Sbjct: 62 DCMAIEQVFMAKNPDSALKLGQARGVAIVAGVNQDLPVFEYAARLVKQTVVGTGAADKKQ 121
Query: 126 IHMMLKMLMPESFFKG 141
+ M++ L+ S
Sbjct: 122 VQHMVRSLLKLSASPQ 137
>gi|114776335|ref|ZP_01451380.1| Crossover junction endodeoxyribonuclease RuvC [Mariprofundus
ferrooxydans PV-1]
gi|114553165|gb|EAU55563.1| Crossover junction endodeoxyribonuclease RuvC [Mariprofundus
ferrooxydans PV-1]
Length = 163
Score = 142 bits (359), Expect = 1e-32, Method: Composition-based stats.
Identities = 65/154 (42%), Positives = 95/154 (61%), Gaps = 1/154 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+G+DPG +TG GI+DV G+ + V I RL L+ GL VI +
Sbjct: 1 MRILGVDPGSLKTGVGIIDVQGNRIRHVHHSVIRCGAG-DFDDRLHILFSGLKLVIAEFH 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P AA+E VFV+K+ + LKLGQAR I + + + VS Y+P +K+AV+G G DK+
Sbjct: 60 PTLAAIEDVFVSKNVNSALKLGQARGALIAACTDSGLRVSPYSPTKVKQAVVGFGRADKE 119
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHA 158
Q+ M+++L+ +DAADALA+A+CHA+HA
Sbjct: 120 QVQHMIRILLHPPEPLAEDAADALAVAICHAHHA 153
>gi|239978433|ref|ZP_04700957.1| Holliday junction resolvase [Streptomyces albus J1074]
gi|291450329|ref|ZP_06589719.1| holliday junction resolvase [Streptomyces albus J1074]
gi|291353278|gb|EFE80180.1| holliday junction resolvase [Streptomyces albus J1074]
Length = 190
Score = 142 bits (359), Expect = 1e-32, Method: Composition-based stats.
Identities = 59/156 (37%), Positives = 86/156 (55%), Gaps = 2/156 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVD-VAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R++G+DPGL R G G+VD VAG L V G I + RL + G+ +
Sbjct: 1 MRVLGVDPGLTRCGIGVVDGVAGRTLTMVGVGVIRTPAEAETPDRLVAVEAGIEAWLDEH 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
RPE AVE+VF + + QA A+A+L A +PV+ + P+ +K AV G G +K
Sbjct: 61 RPERVAVERVFSQHNVRTVMGTAQASAVAMLCAARRGLPVALHTPSEVKAAVTGSGRAEK 120
Query: 124 KQIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHA 158
Q+ M+ L+ + K DAADALA+A+CH + A
Sbjct: 121 DQVGAMVTRLLRLDAPPKPADAADALALAICHIWRA 156
>gi|313892055|ref|ZP_07825653.1| crossover junction endodeoxyribonuclease RuvC [Dialister
microaerophilus UPII 345-E]
gi|313119507|gb|EFR42701.1| crossover junction endodeoxyribonuclease RuvC [Dialister
microaerophilus UPII 345-E]
Length = 164
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 42/135 (31%), Positives = 76/135 (56%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+R +GIDPG R G+GIVD G+++ V G I + SL+ RL ++ G+ ++I+ ++
Sbjct: 1 MRALGIDPGTGRCGFGIVDKKGNSISAVDYGVIETTKEYSLSERLNIIFTGVNELIEIYK 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ +E ++ NK+ + + QAR + L+ +I + E P +K+ V+G G +KK
Sbjct: 61 PDVMGIETLYFNKNITTAISVAQARGVIQLAGFQKKIKIFECTPLQVKQQVVGYGRAEKK 120
Query: 125 QIHMMLKMLMPESFF 139
Q+ M+ +M
Sbjct: 121 QVIEMIMQIMNIKKK 135
>gi|322832434|ref|YP_004212461.1| crossover junction endodeoxyribonuclease RuvC [Rahnella sp. Y9602]
gi|321167635|gb|ADW73334.1| crossover junction endodeoxyribonuclease RuvC [Rahnella sp. Y9602]
Length = 173
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 60/157 (38%), Positives = 95/157 (60%), Gaps = 1/157 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+GI+ G L ++ SG I + V + RL +Y G++++I ++P
Sbjct: 3 IILGIDPGSRITGYGIIRQTGRQLSYLGSGCIRTVV-DDMPGRLKLIYAGVSEIITQFQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+E VF+ K+A + LKLGQAR AI++ +PV EYA +K+ V+G G +K Q
Sbjct: 62 DFFAIESVFMAKNADSALKLGQARGAAIVAAVNQDLPVFEYAARQVKQTVVGTGAAEKAQ 121
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGY 162
+ M++ ++ DAADALAIA+ H + + +
Sbjct: 122 VQHMVRSILKLPANPQADAADALAIAITHCHMSQNAI 158
>gi|269792534|ref|YP_003317438.1| crossover junction endodeoxyribonuclease RuvC [Thermanaerovibrio
acidaminovorans DSM 6589]
gi|269100169|gb|ACZ19156.1| crossover junction endodeoxyribonuclease RuvC [Thermanaerovibrio
acidaminovorans DSM 6589]
Length = 165
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 49/153 (32%), Positives = 79/153 (51%), Gaps = 1/153 (0%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M + + +GIDPG+ G+G+V G +L G I + SL RL L+ L +
Sbjct: 1 MPRDLLCLGIDPGIGTLGYGLVRQRGGDLSAEGYGAIHTPPGLSLPERLSCLFGSLEGEL 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
RP+ AVE+++ ++ + QAR + +L + +PV E P+ +K AV G G
Sbjct: 61 GGVRPDLVAVERLYFGRNTTTAEMVWQARGVVLLFASRLGVPVLEPKPSEVKMAVCGYGG 120
Query: 121 GDKKQIHMMLKMLMPESF-FKGKDAADALAIAV 152
DK+Q+ +M+ L+ D ADALA+A+
Sbjct: 121 ADKRQVQLMVTGLLGLKRCPSPDDVADALAVAI 153
>gi|34580887|ref|ZP_00142367.1| crossover junction endodeoxyribonuclease RuvC [Rickettsia sibirica
246]
gi|238650707|ref|YP_002916560.1| Holliday junction resolvase [Rickettsia peacockii str. Rustic]
gi|259495694|sp|C4K1R1|RUVC_RICPU RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|28262272|gb|EAA25776.1| crossover junction endodeoxyribonuclease RuvC [Rickettsia sibirica
246]
gi|238624805|gb|ACR47511.1| Holliday junction resolvase [Rickettsia peacockii str. Rustic]
Length = 157
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 54/150 (36%), Positives = 84/150 (56%), Gaps = 1/150 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ I+GIDP L GW +V L +++SG I + + ++ RL + L VI ++
Sbjct: 1 MIILGIDPALGSLGWAVVAKETAQLKYLASGIIRTNSKDAIHHRLAFINSTLEKVILEYQ 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P AA+E+ FVN ++V +LKLG AR + + + E+ PNT+KK V G GH +K
Sbjct: 61 PNMAAIEETFVNTNSVTSLKLGYARGAIMSLIGRYNLDMREFKPNTVKKTVTGYGHAEKD 120
Query: 125 QIHMMLKMLMPESF-FKGKDAADALAIAVC 153
Q+ M+K+L+ + D ADA+AIA
Sbjct: 121 QMLHMIKLLLSGTALITNSDEADAVAIAYT 150
>gi|291286412|ref|YP_003503228.1| crossover junction endodeoxyribonuclease RuvC [Denitrovibrio
acetiphilus DSM 12809]
gi|290883572|gb|ADD67272.1| crossover junction endodeoxyribonuclease RuvC [Denitrovibrio
acetiphilus DSM 12809]
Length = 158
Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 48/147 (32%), Positives = 76/147 (51%), Gaps = 1/147 (0%)
Query: 8 IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEE 67
+G+DPGL TG GIV V + +V+ + + + L RL + G+ + ++P
Sbjct: 1 MGVDPGLNCTGIGIVQVWPGKVEYVAHEVVRTDSKDPLPVRLGVICGGIRSALAEYKPSC 60
Query: 68 AAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIH 127
+AVE VF + + + + LGQ R I + I V E+ IKKAV+G G DK+Q+
Sbjct: 61 SAVEDVFYSVNVKSAMLLGQTRGAIIATLLAGDIEVREFTALQIKKAVVGYGKADKQQVK 120
Query: 128 MMLKMLMPESF-FKGKDAADALAIAVC 153
M+++L+ D DALA +C
Sbjct: 121 KMVEVLLGRKMGNVPLDVTDALACGIC 147
>gi|83308728|emb|CAJ01638.1| holliday junction resolvase, endonuclease subunit, ruvC
[Methylocapsa acidiphila]
Length = 182
Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 71/134 (52%), Positives = 100/134 (74%)
Query: 2 RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
+++IRIIGIDPGLRRTGWG+++ G L +V+ G + S + +L+ RL +L++GL VI
Sbjct: 3 QETIRIIGIDPGLRRTGWGVIESCGSRLIYVACGAVRSNEKAALSERLRELHDGLAAVIS 62
Query: 62 NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
+ P EAAVE+ FVN+D + LKLGQAR IA+L+PA A +PV+EYA N IKK ++G GH
Sbjct: 63 AYAPAEAAVEETFVNRDPQSALKLGQARGIALLAPARAGLPVAEYAANLIKKTIVGAGHA 122
Query: 122 DKKQIHMMLKMLMP 135
+K Q+ MM+K L+P
Sbjct: 123 EKAQVAMMVKFLLP 136
>gi|256160419|ref|ZP_05458108.1| Holliday junction resolvase [Brucella ceti M490/95/1]
gi|256255625|ref|ZP_05461161.1| Holliday junction resolvase [Brucella ceti B1/94]
gi|261222828|ref|ZP_05937109.1| crossover junction endodeoxyribonuclease ruvC [Brucella ceti B1/94]
gi|265998787|ref|ZP_06111344.1| crossover junction endodeoxyribonuclease ruvC [Brucella ceti
M490/95/1]
gi|260921412|gb|EEX88065.1| crossover junction endodeoxyribonuclease ruvC [Brucella ceti B1/94]
gi|262553476|gb|EEZ09245.1| crossover junction endodeoxyribonuclease ruvC [Brucella ceti
M490/95/1]
Length = 173
Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 105/160 (65%), Positives = 130/160 (81%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M+++IRIIGIDPGLR+TGWGIV+ G++L F+ SGT+ S LA RLCQL+EGL+ V+
Sbjct: 1 MKETIRIIGIDPGLRQTGWGIVESLGNSLHFIGSGTVTSNAEMDLASRLCQLHEGLSKVL 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
+ P EAAVE FVNKDA ATLKLGQAR IA+L+PA A +PV+EYAPN +KKAVIGVGH
Sbjct: 61 HEFMPHEAAVEHTFVNKDATATLKLGQARGIALLAPAQAGLPVAEYAPNAVKKAVIGVGH 120
Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
G+K+QIHMM+K+LMP + F DAADALAIA+CHA+H S
Sbjct: 121 GEKQQIHMMVKVLMPRASFDTSDAADALAIAICHAHHRQS 160
>gi|156740729|ref|YP_001430858.1| Holliday junction resolvase [Roseiflexus castenholzii DSM 13941]
gi|156232057|gb|ABU56840.1| crossover junction endodeoxyribonuclease RuvC [Roseiflexus
castenholzii DSM 13941]
Length = 168
Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 55/137 (40%), Positives = 77/137 (56%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
R IGIDPG R GWGIV+ G + V G + + S A RL QLY L +I + P
Sbjct: 5 RTIGIDPGTARMGWGIVEETGGTVSLVDCGVLTTPAGVSQASRLLQLYNDLCSLIARYHP 64
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
AA+E++F K+ L +GQAR IA+L+ A A IPV EY P +K+A+ G G DK+Q
Sbjct: 65 AAAAIEELFFGKNVNTALNVGQARGIALLAFAQAGIPVHEYKPLQVKQALAGYGGADKRQ 124
Query: 126 IHMMLKMLMPESFFKGK 142
+ M+++ +
Sbjct: 125 VQEMVRLTLRLPTIPRP 141
>gi|254282357|ref|ZP_04957325.1| crossover junction endodeoxyribonuclease RuvC [gamma
proteobacterium NOR51-B]
gi|219678560|gb|EED34909.1| crossover junction endodeoxyribonuclease RuvC [gamma
proteobacterium NOR51-B]
Length = 176
Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 52/134 (38%), Positives = 80/134 (59%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
I+GIDPG R+TG+GI+ + +V+SG I V LA RL L+ L ++I ++P
Sbjct: 4 ILGIDPGSRKTGFGIIRLVSGRSTYVTSGVIRLPVEAELATRLGVLFASLNELIDEYQPT 63
Query: 67 EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
E ++EQVF+ +A + LKLGQAR A+++ + V EY+ IK+AV+G G DK+Q+
Sbjct: 64 ELSIEQVFMAHNAGSALKLGQARGAAMVACVQRDMAVHEYSARQIKQAVVGTGGADKQQV 123
Query: 127 HMMLKMLMPESFFK 140
M+ L+
Sbjct: 124 QHMVTRLLQLPATP 137
>gi|294790876|ref|ZP_06756034.1| crossover junction endodeoxyribonuclease RuvC [Scardovia inopinata
F0304]
gi|294458773|gb|EFG27126.1| crossover junction endodeoxyribonuclease RuvC [Scardovia inopinata
F0304]
Length = 192
Score = 141 bits (357), Expect = 2e-32, Method: Composition-based stats.
Identities = 48/155 (30%), Positives = 80/155 (51%), Gaps = 2/155 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+ I G+DPGL R G G ++ A L F+ + S RL ++ GL+ + +
Sbjct: 1 MIICGVDPGLTRCGIGFIEAGASHRLSFIHVDLVRSSPHDPQDARLLAIFNGLSRQLDTY 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
P+ ++E+VF ++ L QA +A+++ A IPV+ + P K AV G G +K
Sbjct: 61 LPDVVSIERVFAQENRNTVLGTAQAAGLAMVAAAQRGIPVALHTPTEAKLAVTGNGKANK 120
Query: 124 KQIHMMLKMLMPESFFK-GKDAADALAIAVCHAYH 157
Q+ M+ ++ + DAAD+LA+A+CHA
Sbjct: 121 AQVQTMVAKILSLNALPSPPDAADSLALAICHALR 155
>gi|256823081|ref|YP_003147044.1| crossover junction endodeoxyribonuclease RuvC [Kangiella koreensis
DSM 16069]
gi|256796620|gb|ACV27276.1| crossover junction endodeoxyribonuclease RuvC [Kangiella koreensis
DSM 16069]
Length = 176
Score = 141 bits (357), Expect = 2e-32, Method: Composition-based stats.
Identities = 52/140 (37%), Positives = 89/140 (63%), Gaps = 5/140 (3%)
Query: 6 RIIGIDPGLRRTGWGIVDVAG----DNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
I+GIDPG R TG+GI++V G + +++SG I ++L +L Q+++ + ++I+
Sbjct: 3 IILGIDPGSRLTGFGIIEVGGQIPANRPRYITSGCIR-IKDETLDLKLKQIFDSVCELIQ 61
Query: 62 NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
++P+E A+E VF++K+A + LKLGQAR AI++ + +PVSEY +K++V+G G
Sbjct: 62 EFKPDEFAIESVFLSKNADSALKLGQARGAAIVAASHYALPVSEYPATKVKQSVVGTGGA 121
Query: 122 DKKQIHMMLKMLMPESFFKG 141
DK Q+ M+K L+
Sbjct: 122 DKSQVQHMVKTLLKLPTSPQ 141
>gi|254362419|ref|ZP_04978528.1| crossover junction endodeoxyribonuclease [Mannheimia haemolytica
PHL213]
gi|261494088|ref|ZP_05990591.1| crossover junction endodeoxyribonuclease [Mannheimia haemolytica
serotype A2 str. BOVINE]
gi|261496071|ref|ZP_05992481.1| crossover junction endodeoxyribonuclease [Mannheimia haemolytica
serotype A2 str. OVINE]
gi|153094008|gb|EDN74924.1| crossover junction endodeoxyribonuclease [Mannheimia haemolytica
PHL213]
gi|261308321|gb|EEY09614.1| crossover junction endodeoxyribonuclease [Mannheimia haemolytica
serotype A2 str. OVINE]
gi|261310254|gb|EEY11454.1| crossover junction endodeoxyribonuclease [Mannheimia haemolytica
serotype A2 str. BOVINE]
Length = 192
Score = 141 bits (357), Expect = 2e-32, Method: Composition-based stats.
Identities = 62/154 (40%), Positives = 94/154 (61%), Gaps = 1/154 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G L ++ SG I + + L RL ++Y G++++I ++P
Sbjct: 3 IILGIDPGSRVTGYGVIRQNGRQLEYLGSGAIRTTA-EDLPTRLKRIYAGVSEIITQFQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
A+EQVF+ K+ + LKLGQAR AI++ +PV EYA +K+ V G+G DK Q
Sbjct: 62 NMFAIEQVFMAKNPDSALKLGQARGTAIVAAVNHDLPVFEYAARLVKQTVTGIGSADKVQ 121
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHAN 159
+ M+ ++ S DAADALAIA+ HA+
Sbjct: 122 VQDMVTRMLKLSAKPQADAADALAIAITHAHSIQ 155
>gi|46199033|ref|YP_004700.1| crossover junction endodeoxyribonuclease ruvC [Thermus thermophilus
HB27]
gi|55981059|ref|YP_144356.1| Holliday junction resolvase RuvC [Thermus thermophilus HB8]
gi|81567696|sp|Q72JP3|RUVC_THET2 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|81600435|sp|Q5SJC4|RUVC_THET8 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|46196657|gb|AAS81073.1| crossover junction endodeoxyribonuclease ruvC [Thermus thermophilus
HB27]
gi|55772472|dbj|BAD70913.1| Holliday junction resolvase RuvC [Thermus thermophilus HB8]
Length = 166
Score = 141 bits (357), Expect = 2e-32, Method: Composition-based stats.
Identities = 46/164 (28%), Positives = 85/164 (51%), Gaps = 4/164 (2%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGD---NLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
+ + GIDPG+ G G+V V G + + + ++ R+ +++ + +V+
Sbjct: 1 MVVAGIDPGITHLGLGVVAVEGKGALKARLLHGEVVKTSPQEPAKERVGRIHARVLEVLH 60
Query: 62 NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
+RPE AVE+ F + K+G A +++ A +PV Y P +K+A+ G GH
Sbjct: 61 RFRPEAVAVEEQFFYRQNELAYKVGWALGAVLVAAFEAGVPVYAYGPMQVKQALAGHGHA 120
Query: 122 DKKQIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHANSGYYK 164
K+++ +M++ ++ + ADALAIA+ HA++A G K
Sbjct: 121 AKEEVALMVRGILGLKEAPRPSHLADALAIALTHAFYARMGTAK 164
>gi|227329530|ref|ZP_03833554.1| Holliday junction resolvase [Pectobacterium carotovorum subsp.
carotovorum WPP14]
Length = 173
Score = 141 bits (357), Expect = 2e-32, Method: Composition-based stats.
Identities = 67/163 (41%), Positives = 102/163 (62%), Gaps = 1/163 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+GI+ G +L ++ SG I + V + RL +Y G++++I +RP
Sbjct: 3 IIVGIDPGSRVTGYGIIRQQGRHLTYLGSGCIRTVV-DDMPTRLKLIYAGVSEIITQFRP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQVF+ K+ + LKLGQAR +AI++ +PV EYA +K+ V+G G DKKQ
Sbjct: 62 DCMAIEQVFMAKNPDSALKLGQARGVAIVAGVNQDLPVFEYAARLVKQTVVGTGAADKKQ 121
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
+ M++ L+ S DAADALAIA+ H + + S A++
Sbjct: 122 VQHMVRSLLKLSASPQADAADALAIAITHCHFSQSLLRTAAAK 164
>gi|315126270|ref|YP_004068273.1| Holliday junction nuclease [Pseudoalteromonas sp. SM9913]
gi|315014784|gb|ADT68122.1| Holliday junction nuclease [Pseudoalteromonas sp. SM9913]
Length = 174
Score = 141 bits (357), Expect = 2e-32, Method: Composition-based stats.
Identities = 66/163 (40%), Positives = 97/163 (59%), Gaps = 2/163 (1%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G+V G ++ SG I RL +Y+G+T +I+ + P
Sbjct: 3 IILGIDPGSRLTGYGVVAHQGAKFTYLGSGCIKL-ADHDFPTRLKMIYQGITQLIEQFSP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
E A+E+VF+ + + LKLGQAR AI+ ++A +PV EY+ IK+AV+G G DK Q
Sbjct: 62 ETFAIEKVFMAHNPDSALKLGQARGAAIVGASMADLPVFEYSARQIKQAVVGNGGADKSQ 121
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
+ M+K ++ DAADALAIA+CHA+ + K+A
Sbjct: 122 VQHMVKNILKLPGTPQADAADALAIAICHAHSEQN-LIKLAGS 163
>gi|50121418|ref|YP_050585.1| Holliday junction resolvase [Pectobacterium atrosepticum SCRI1043]
gi|81644877|sp|Q6D4A0|RUVC_ERWCT RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|49611944|emb|CAG75393.1| crossover junction endodeoxyribonuclease [Pectobacterium
atrosepticum SCRI1043]
Length = 170
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 55/136 (40%), Positives = 85/136 (62%), Gaps = 1/136 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+GI+ G +L ++ SG I + V + RL +Y G++++I ++P
Sbjct: 3 IIVGIDPGSRVTGYGIIRQQGRHLTYLGSGCIRTVV-DDMPTRLKLIYAGVSEIITQFQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQVF+ K+ + LKLGQAR +AI++ +PV EYA +KK V+G G DKKQ
Sbjct: 62 DCMAIEQVFMAKNPDSALKLGQARGVAIVAGVNQDLPVFEYAARLVKKTVVGTGAADKKQ 121
Query: 126 IHMMLKMLMPESFFKG 141
+ M++ L+ S
Sbjct: 122 VQHMVRSLLKLSASPQ 137
>gi|213855274|ref|ZP_03383514.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
serovar Typhi str. M223]
Length = 127
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 51/126 (40%), Positives = 81/126 (64%), Gaps = 1/126 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G L ++ SG I + L RL +Y G+T++I ++P
Sbjct: 3 IILGIDPGSRITGYGVIRQVGRQLTYLGSGCIRT-KVDDLPSRLKLIYAGVTEIITQFQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQVF+ K+A + LKLGQAR +AI++ +PV EYA +K+ V+G+G +K Q
Sbjct: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121
Query: 126 IHMMLK 131
+ M++
Sbjct: 122 VQHMVR 127
>gi|253688205|ref|YP_003017395.1| crossover junction endodeoxyribonuclease RuvC [Pectobacterium
carotovorum subsp. carotovorum PC1]
gi|259495690|sp|C6DFF0|RUVC_PECCP RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|251754783|gb|ACT12859.1| crossover junction endodeoxyribonuclease RuvC [Pectobacterium
carotovorum subsp. carotovorum PC1]
Length = 173
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 55/136 (40%), Positives = 85/136 (62%), Gaps = 1/136 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+GI+ G +L ++ SG I + V + RL +Y G++++I +RP
Sbjct: 3 IIVGIDPGSRVTGYGIIRQQGRHLTYLGSGCIRTVV-DDMPTRLKLIYAGVSEIITQFRP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQVF+ K+ + LKLGQAR +AI++ +PV EYA +K+ V+G G DKKQ
Sbjct: 62 DCMAIEQVFMAKNPDSALKLGQARGVAIVAGVNQDLPVFEYAARLVKQTVVGTGAADKKQ 121
Query: 126 IHMMLKMLMPESFFKG 141
+ M++ L+ S
Sbjct: 122 VQHMVRSLLKLSASPQ 137
>gi|23502562|ref|NP_698689.1| Holliday junction resolvase [Brucella suis 1330]
gi|38258597|sp|Q8FZ01|RUVC_BRUSU RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|23348563|gb|AAN30604.1| crossover junction endodeoxyribonuclease RuvC [Brucella suis 1330]
Length = 173
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 105/160 (65%), Positives = 129/160 (80%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M+++IRIIGIDPGL RTGWGIV+ G++L F+ SGT+ S LA RLCQL+EGL+ V+
Sbjct: 1 MKETIRIIGIDPGLLRTGWGIVESLGNSLHFIGSGTVTSNAEMDLASRLCQLHEGLSKVL 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
+ P EAAVE FVNKDA ATLKLGQAR IA+L+PA A +PV+EYAPN +KKAVIGVGH
Sbjct: 61 HEFMPHEAAVEHTFVNKDATATLKLGQARGIALLAPAQAGLPVAEYAPNAVKKAVIGVGH 120
Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
G+K+QIHMM+K+LMP + F DAADALAIA+CHA+H S
Sbjct: 121 GEKQQIHMMVKVLMPRASFDTSDAADALAIAICHAHHRQS 160
>gi|316932641|ref|YP_004107623.1| crossover junction endodeoxyribonuclease RuvC [Rhodopseudomonas
palustris DX-1]
gi|315600355|gb|ADU42890.1| crossover junction endodeoxyribonuclease RuvC [Rhodopseudomonas
palustris DX-1]
Length = 173
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 88/160 (55%), Positives = 115/160 (71%)
Query: 3 KSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
+S+RI+GIDPGLRRTGWG+V+ G+ L +V+ G++ LA RL +++GL V+
Sbjct: 7 RSVRILGIDPGLRRTGWGVVESEGNRLIYVACGSVEPRDTLPLAERLLAIHDGLAKVLAA 66
Query: 63 WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
P EAAVEQ FVNKD ATLKLGQAR +A+L PA+ + V+EYAPN +KK V+G GH D
Sbjct: 67 HAPAEAAVEQTFVNKDGAATLKLGQARGVAMLVPAMHGLLVAEYAPNLVKKTVVGAGHAD 126
Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGY 162
K QI MMLK+L+P++ K DAADALAIA+ HA+H S
Sbjct: 127 KTQIQMMLKILLPKAEPKTADAADALAIAITHAHHRVSAQ 166
>gi|85703561|ref|ZP_01034665.1| Holliday junction resolvase [Roseovarius sp. 217]
gi|85672489|gb|EAQ27346.1| Holliday junction resolvase [Roseovarius sp. 217]
Length = 168
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 84/157 (53%), Positives = 109/157 (69%), Gaps = 1/157 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+R++GIDPGLR GWG+++V G L V++G I LA RL LYE LTD++ +
Sbjct: 1 MRVLGIDPGLRNLGWGVIEVEGSRLSHVANG-ICHSTGPDLAARLLSLYEQLTDILHRFD 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ AAVEQ FVNKD TLKLGQAR IA+L PA + V EY+PNT+KK V+GVGH K+
Sbjct: 60 PQAAAVEQTFVNKDGAGTLKLGQARGIALLVPAQYGLTVGEYSPNTVKKTVVGVGHAAKE 119
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSG 161
Q+ M+K+ +P G DAADALAIA+CHA+H+ S
Sbjct: 120 QVAHMVKVQLPGVLLAGPDAADALAIAICHAHHSRSS 156
>gi|110833612|ref|YP_692471.1| endonuclease RuvC [Alcanivorax borkumensis SK2]
gi|123149640|sp|Q0VRJ9|RUVC_ALCBS RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|110646723|emb|CAL16199.1| endonuclease RuvC [Alcanivorax borkumensis SK2]
Length = 172
Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats.
Identities = 68/162 (41%), Positives = 105/162 (64%), Gaps = 2/162 (1%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
I+GIDPG RRTG+G+VDV G+ V+ GTI + ++ + RL +++ G+ V+K + P
Sbjct: 4 ILGIDPGSRRTGYGVVDVVGNRSRAVAFGTITTSHKE-IPPRLGEIFAGIDQVVKEYGPA 62
Query: 67 EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
E ++E+VF+ ++A + LKLGQAR AI + A +PV EY+ +K+AV+G G +K Q+
Sbjct: 63 EVSIEKVFMARNADSALKLGQARGAAIAAVMQACVPVFEYSARQVKQAVVGKGGAEKNQV 122
Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
M+K L+ +DAADALAIA+CHA+ S ++A
Sbjct: 123 GEMVKYLLKLDQRPQEDAADALAIALCHAHMRLS-LARMAGA 163
>gi|229820483|ref|YP_002882009.1| crossover junction endodeoxyribonuclease RuvC [Beutenbergia
cavernae DSM 12333]
gi|229566396|gb|ACQ80247.1| crossover junction endodeoxyribonuclease RuvC [Beutenbergia
cavernae DSM 12333]
Length = 199
Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats.
Identities = 48/155 (30%), Positives = 80/155 (51%), Gaps = 2/155 (1%)
Query: 7 IIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPGL R G G+++ G + V G + L RL + + + + + +P
Sbjct: 2 ILGIDPGLTRCGIGVIESLPGRRVRLVDVGVATTPAGDPLEARLVSVADRIDEWLDAHQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ AVE+VF + Q +A+++ A IPV+ + P+ +K A+ G G +K Q
Sbjct: 62 DAVAVERVFAQANVRTITGTAQVAGLAMVAAARRGIPVATHTPSEVKAAITGSGRAEKPQ 121
Query: 126 IHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHAN 159
+ M+ L+ + DAADALA+A+CHA+
Sbjct: 122 VQEMVARLLALAERPRPADAADALALAICHAWRGG 156
>gi|15605231|ref|NP_220017.1| Holliday junction resolvase [Chlamydia trachomatis D/UW-3/CX]
gi|166154717|ref|YP_001654835.1| Holliday junction resolvase [Chlamydia trachomatis 434/Bu]
gi|166155592|ref|YP_001653847.1| Holliday junction resolvase [Chlamydia trachomatis
L2b/UCH-1/proctitis]
gi|237802931|ref|YP_002888125.1| Holliday junction resolvase [Chlamydia trachomatis B/Jali20/OT]
gi|237804853|ref|YP_002889007.1| Holliday junction resolvase [Chlamydia trachomatis B/TZ1A828/OT]
gi|255311320|ref|ZP_05353890.1| Holliday junction resolvase [Chlamydia trachomatis 6276]
gi|255317621|ref|ZP_05358867.1| Holliday junction resolvase [Chlamydia trachomatis 6276s]
gi|255348879|ref|ZP_05380886.1| Holliday junction resolvase [Chlamydia trachomatis 70]
gi|255503419|ref|ZP_05381809.1| Holliday junction resolvase [Chlamydia trachomatis 70s]
gi|255507097|ref|ZP_05382736.1| Holliday junction resolvase [Chlamydia trachomatis D(s)2923]
gi|301335991|ref|ZP_07224235.1| Holliday junction resolvase [Chlamydia trachomatis L2tet1]
gi|6685941|sp|O84510|RUVC_CHLTR RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|226698749|sp|B0BCE1|RUVC_CHLTB RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|238687388|sp|B0B876|RUVC_CHLT2 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|3328939|gb|AAC68103.1| Crossover Junction Endonuclease [Chlamydia trachomatis D/UW-3/CX]
gi|165930705|emb|CAP04202.1| endodeoxyribonuclease [Chlamydia trachomatis 434/Bu]
gi|165931580|emb|CAP07156.1| endodeoxyribonuclease [Chlamydia trachomatis L2b/UCH-1/proctitis]
gi|231273153|emb|CAX10066.1| endodeoxyribonuclease [Chlamydia trachomatis B/TZ1A828/OT]
gi|231274165|emb|CAX10959.1| endodeoxyribonuclease [Chlamydia trachomatis B/Jali20/OT]
gi|289525547|emb|CBJ15025.1| endodeoxyribonuclease [Chlamydia trachomatis Sweden2]
gi|296435107|gb|ADH17285.1| Holliday junction resolvase [Chlamydia trachomatis E/150]
gi|296436035|gb|ADH18209.1| Holliday junction resolvase [Chlamydia trachomatis G/9768]
gi|296436963|gb|ADH19133.1| Holliday junction resolvase [Chlamydia trachomatis G/11222]
gi|296437896|gb|ADH20057.1| Holliday junction resolvase [Chlamydia trachomatis G/11074]
gi|296438827|gb|ADH20980.1| Holliday junction resolvase [Chlamydia trachomatis E/11023]
gi|297140396|gb|ADH97154.1| Holliday junction resolvase [Chlamydia trachomatis G/9301]
gi|297748632|gb|ADI51178.1| RuvC [Chlamydia trachomatis D-EC]
gi|297749512|gb|ADI52190.1| RuvC [Chlamydia trachomatis D-LC]
Length = 170
Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats.
Identities = 54/154 (35%), Positives = 91/154 (59%), Gaps = 4/154 (2%)
Query: 7 IIGIDPGLRRTGWGIVDVAGD-NLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG G+ ++ V ++ S G + + +LA R QL+ ++ +++ P
Sbjct: 5 IMGIDPGTLVCGYALIKVENRYHIHPHSFGKVKLSQKLALAHRYKQLFTEISTILQQESP 64
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ +E +V+K+ +T+KLG AR + +L+ +L +PV EYAPNT KKA +G G+ KKQ
Sbjct: 65 KAVVLETQYVHKNPQSTIKLGMARGVLLLAASLQDVPVFEYAPNTAKKAAVGKGNASKKQ 124
Query: 126 IHMMLKMLMPESFFK---GKDAADALAIAVCHAY 156
+ +M+ L+ +D ADA A+A+CHA+
Sbjct: 125 VQLMVSKLLRVPDLLAEDNEDIADAFALAMCHAH 158
>gi|291280037|ref|YP_003496872.1| crossover junction endodeoxyribonuclease RuvC [Deferribacter
desulfuricans SSM1]
gi|290754739|dbj|BAI81116.1| crossover junction endodeoxyribonuclease RuvC [Deferribacter
desulfuricans SSM1]
Length = 166
Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats.
Identities = 44/152 (28%), Positives = 78/152 (51%), Gaps = 3/152 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDV--AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
+ I GIDPGL +TG G++++ ++ V + + S ++ ++ + L+ +K
Sbjct: 1 MIIFGIDPGLNKTGVGVLELADNNNSFRCVDYTVLKNKSSLSTIDKIAEITDSLSKYVKR 60
Query: 63 WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
+ P AAVE+ F + + + LG AR I + + V ++ IKK+V+G G D
Sbjct: 61 YSPLYAAVEESFYSVNVKTAISLGMARGAIISTLLSHSVKVFQFTALQIKKSVVGYGKAD 120
Query: 123 KKQIHMMLKMLMPES-FFKGKDAADALAIAVC 153
K Q+ M++M + S D +DALA +C
Sbjct: 121 KNQVKKMVEMQLNISLDNVLNDVSDALACGIC 152
>gi|170747363|ref|YP_001753623.1| crossover junction endodeoxyribonuclease RuvC [Methylobacterium
radiotolerans JCM 2831]
gi|238688881|sp|B1LZP2|RUVC_METRJ RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|170653885|gb|ACB22940.1| crossover junction endodeoxyribonuclease RuvC [Methylobacterium
radiotolerans JCM 2831]
Length = 207
Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats.
Identities = 74/140 (52%), Positives = 98/140 (70%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M +RI+GIDPGLRRTGWG++ G L + G + S LA RL +L+EG+ ++
Sbjct: 1 MTSPVRILGIDPGLRRTGWGLITAQGTKLTYGDCGVVTSDGELPLALRLRELFEGIGRIV 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
+ RP+E AVE+ FVNKDA ATLKLG ARA+A+L PALA +PV EYAPN IKK V G GH
Sbjct: 61 EAVRPDEVAVEETFVNKDAQATLKLGHARAMALLVPALAGLPVFEYAPNLIKKTVAGSGH 120
Query: 121 GDKKQIHMMLKMLMPESFFK 140
+K QI M++ L+P++ F+
Sbjct: 121 AEKVQIQAMVRFLLPKAEFR 140
>gi|227111609|ref|ZP_03825265.1| Holliday junction resolvase [Pectobacterium carotovorum subsp.
brasiliensis PBR1692]
Length = 173
Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats.
Identities = 55/136 (40%), Positives = 85/136 (62%), Gaps = 1/136 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+GI+ G +L ++ SG I + V + RL +Y G++++I +RP
Sbjct: 3 IIVGIDPGSRVTGYGIIRQQGRHLTYLGSGCIRTVV-DDMPTRLKLIYAGVSEIITQFRP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQVF+ K+ + LKLGQAR +AI++ +PV EYA +K+ V+G G DKKQ
Sbjct: 62 DCMAIEQVFMAKNPDSALKLGQARGVAIVAGVNQDLPVFEYAARLVKQTVVGTGAADKKQ 121
Query: 126 IHMMLKMLMPESFFKG 141
+ M++ L+ S
Sbjct: 122 VQHMVRSLLKLSASPQ 137
>gi|149203737|ref|ZP_01880706.1| Holliday junction resolvase [Roseovarius sp. TM1035]
gi|149142854|gb|EDM30896.1| Holliday junction resolvase [Roseovarius sp. TM1035]
Length = 214
Score = 141 bits (355), Expect = 4e-32, Method: Composition-based stats.
Identities = 85/159 (53%), Positives = 110/159 (69%), Gaps = 1/159 (0%)
Query: 3 KSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
+R++GIDPGLR GWG+++V+G L V++G I LA RL LYE LTD++
Sbjct: 45 SEMRVLGIDPGLRNLGWGVIEVSGSRLSHVANG-ICHSSGPDLAARLLSLYEQLTDILHR 103
Query: 63 WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
+ P+ AAVEQ FVNKD TLKLGQAR IA+L PA + V EY+PNT+KK V+GVGH
Sbjct: 104 FDPQAAAVEQTFVNKDGAGTLKLGQARGIALLVPAQYGLTVGEYSPNTVKKTVVGVGHAA 163
Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSG 161
K+Q+ M+K+ +P G DAADALAIA+CHA+HA S
Sbjct: 164 KEQVAHMVKVQLPGVVLAGPDAADALAIAICHAHHARSS 202
>gi|76789239|ref|YP_328325.1| Holliday junction resolvase [Chlamydia trachomatis A/HAR-13]
gi|91771933|sp|Q3KLJ5|RUVC_CHLTA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|76167769|gb|AAX50777.1| RuvC [Chlamydia trachomatis A/HAR-13]
Length = 170
Score = 141 bits (355), Expect = 4e-32, Method: Composition-based stats.
Identities = 54/154 (35%), Positives = 91/154 (59%), Gaps = 4/154 (2%)
Query: 7 IIGIDPGLRRTGWGIVDVAGD-NLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG G+ ++ V ++ S G + + +LA R QL+ ++ +++ P
Sbjct: 5 IMGIDPGTLVCGYALIKVENRYHIHPHSFGKVKLSQKLALAHRYKQLFTEISTILQQESP 64
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ +E +V+K+ +T+KLG AR + +L+ +L +PV EYAPNT KKA +G G+ KKQ
Sbjct: 65 KAVVLETQYVHKNPQSTIKLGMARGVLLLAASLQDVPVFEYAPNTAKKAAVGKGNASKKQ 124
Query: 126 IHMMLKMLMPESFFK---GKDAADALAIAVCHAY 156
+ +M+ L+ +D ADA A+A+CHA+
Sbjct: 125 VQLMVSKLLRVPDLLAEDNEDIADAFALAMCHAH 158
>gi|52424766|ref|YP_087903.1| Holliday junction resolvase [Mannheimia succiniciproducens MBEL55E]
gi|81609597|sp|Q65UP2|RUVC_MANSM RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|52306818|gb|AAU37318.1| RuvC protein [Mannheimia succiniciproducens MBEL55E]
Length = 199
Score = 141 bits (355), Expect = 4e-32, Method: Composition-based stats.
Identities = 66/163 (40%), Positives = 96/163 (58%), Gaps = 1/163 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+GI+ G L ++ SG I + V + L RL ++Y G+T++I +RP
Sbjct: 12 IILGIDPGSRVTGYGIIRQTGRTLEYLGSGAIRTQV-EDLPTRLKRIYAGVTEIITQFRP 70
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+E+VF+ K+ + LKLGQAR AI++ +PV EYA +K+ V G G DK Q
Sbjct: 71 DMFAIEEVFLAKNPNSALKLGQARGTAIVAAVNQNLPVFEYAARLVKQTVTGSGSADKVQ 130
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
+ M+ ++ S DAADALAIA+ HA+ S
Sbjct: 131 VQDMVTRILRLSDKPQADAADALAIAITHAHTIQHSLQVATSA 173
>gi|39934174|ref|NP_946450.1| Holliday junction resolvase [Rhodopseudomonas palustris CGA009]
gi|192289699|ref|YP_001990304.1| Holliday junction resolvase [Rhodopseudomonas palustris TIE-1]
gi|81563777|sp|Q6NAT1|RUVC_RHOPA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|229558763|sp|B3QHS1|RUVC_RHOPT RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|39648022|emb|CAE26542.1| RuvC; Holliday junction nuclease [Rhodopseudomonas palustris
CGA009]
gi|192283448|gb|ACE99828.1| crossover junction endodeoxyribonuclease RuvC [Rhodopseudomonas
palustris TIE-1]
Length = 174
Score = 141 bits (355), Expect = 4e-32, Method: Composition-based stats.
Identities = 89/159 (55%), Positives = 115/159 (72%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
+R+ IRI+GIDPGLRRTGWG+VD G+ L +V+ G++ LA RL +++GL V+
Sbjct: 6 IRRPIRILGIDPGLRRTGWGVVDSDGNRLVYVACGSVEPRDTLPLAERLLAIHDGLAKVL 65
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
P EAAVEQ FVNKD ATLKLGQAR +A+L PA+ + V+EYAPN +KK V+G GH
Sbjct: 66 AAHAPAEAAVEQTFVNKDGAATLKLGQARGVAMLVPAMHGLLVAEYAPNLVKKTVVGAGH 125
Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHAN 159
DK QI MMLK+L+P++ K DAADALAIA+ HA+H
Sbjct: 126 ADKTQIQMMLKILLPKADPKTADAADALAIAITHAHHRG 164
>gi|15602843|ref|NP_245915.1| Holliday junction resolvase [Pasteurella multocida subsp. multocida
str. Pm70]
gi|13431842|sp|P57894|RUVC_PASMU RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|12721304|gb|AAK03062.1| RuvC [Pasteurella multocida subsp. multocida str. Pm70]
Length = 190
Score = 141 bits (355), Expect = 4e-32, Method: Composition-based stats.
Identities = 64/158 (40%), Positives = 100/158 (63%), Gaps = 1/158 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ AG +L ++ SG I + V L RL ++Y G+ ++I ++P
Sbjct: 3 IILGIDPGSRVTGYGVIRQAGRHLEYLGSGVIRTSV-TDLPTRLKRIYMGVNEIILQYQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+E+VF+ K+A + LKLGQAR AI++ +PV EYA +K+ V+G+G DK Q
Sbjct: 62 DMFAIEEVFLAKNANSALKLGQARGAAIVAAVNHDLPVFEYAARLVKQTVVGIGSADKIQ 121
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYY 163
+ M+ ++ S DAADALAIA+ HA+ ++
Sbjct: 122 VQDMVTRILTLSEKPQADAADALAIAITHAHSLQHAFH 159
>gi|120554626|ref|YP_958977.1| crossover junction endodeoxyribonuclease RuvC [Marinobacter
aquaeolei VT8]
gi|166233202|sp|A1U1C1|RUVC_MARAV RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|120324475|gb|ABM18790.1| Holliday junction endonuclease RuvC [Marinobacter aquaeolei VT8]
Length = 175
Score = 141 bits (355), Expect = 4e-32, Method: Composition-based stats.
Identities = 67/161 (41%), Positives = 100/161 (62%), Gaps = 2/161 (1%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+G+DPG R TG+G++ G L ++ SG I + +A RL ++ L +I +RP
Sbjct: 3 IILGVDPGSRITGYGLIRSEGRLLEYLDSGCIRV-GEKPMAERLQTIFHSLAVLIGEYRP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
EE A+EQVF+ ++ + LKLGQAR AI+S A + + V EY+ +K+AV+G G DK Q
Sbjct: 62 EEFAIEQVFMARNPDSALKLGQARGAAIVSAANSGLAVHEYSARQVKQAVVGTGGADKSQ 121
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
+ M++ L+ S DAADALAIA+CHA+ S ++A
Sbjct: 122 VQHMVQALLGLSRKPQADAADALAIALCHAHMNQSVL-RMA 161
>gi|240851226|ref|YP_002972629.1| Holliday junction resolvase ruvC [Bartonella grahamii as4aup]
gi|240268349|gb|ACS51937.1| Holliday junction resolvase ruvC [Bartonella grahamii as4aup]
Length = 171
Score = 141 bits (355), Expect = 4e-32, Method: Composition-based stats.
Identities = 91/139 (65%), Positives = 117/139 (84%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M ++IRIIGIDPGLRRTGWG++DVAG+ L F+++GT+ S V+ LA RLCQ+++GL++V+
Sbjct: 1 MAETIRIIGIDPGLRRTGWGVIDVAGNRLQFIAAGTVSSDVKCELASRLCQIHKGLSEVV 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
+ P EAAVE VFVNKDA ATLKLGQARAIA+L PA A +PV EYAPN +KK+VIGVGH
Sbjct: 61 HQFMPHEAAVEHVFVNKDATATLKLGQARAIALLVPAQANLPVFEYAPNKVKKSVIGVGH 120
Query: 121 GDKKQIHMMLKMLMPESFF 139
G K+QIHMM+K+L+P + F
Sbjct: 121 GAKEQIHMMIKVLLPRAEF 139
>gi|284032306|ref|YP_003382237.1| crossover junction endodeoxyribonuclease RuvC [Kribbella flavida
DSM 17836]
gi|283811599|gb|ADB33438.1| crossover junction endodeoxyribonuclease RuvC [Kribbella flavida
DSM 17836]
Length = 208
Score = 141 bits (355), Expect = 4e-32, Method: Composition-based stats.
Identities = 54/167 (32%), Positives = 87/167 (52%), Gaps = 3/167 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVD-VAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R++G+DPGL R G GIV+ G V+ G I + +A RL + G+ I
Sbjct: 1 MRVLGVDPGLTRCGLGIVEGAPGRPPKLVAVGVIRTPTDLDVAQRLVLIEAGIEQWIAEH 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
P+ AVE+VF + + QA +A++ A +PV+ + P+ +K AV G G K
Sbjct: 61 APDAVAVERVFAQHNVRTVMGTAQASGVAMVVAARRGLPVALHTPSEVKAAVTGSGRAGK 120
Query: 124 KQIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYH-ANSGYYKIASQ 168
+Q+ M+ ++ DAADALA+A+CH + A + + A+Q
Sbjct: 121 EQVTSMVTRILQLPERPTPADAADALALAICHVWRGAGTSRRQEAAQ 167
>gi|148658443|ref|YP_001278648.1| Holliday junction resolvase [Roseiflexus sp. RS-1]
gi|187611449|sp|A5V1E5|RUVC_ROSS1 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|148570553|gb|ABQ92698.1| crossover junction endodeoxyribonuclease RuvC [Roseiflexus sp.
RS-1]
Length = 168
Score = 141 bits (355), Expect = 4e-32, Method: Composition-based stats.
Identities = 52/142 (36%), Positives = 77/142 (54%), Gaps = 1/142 (0%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M + R IGIDPG R GWG+V+ L V G + + S A RL LY L +I
Sbjct: 1 MTAT-RTIGIDPGTARMGWGVVEETDGVLRLVDCGVLTTSAELSQAERLLLLYNELRHLI 59
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
+ + P AA+E++F K+ L +GQAR + +L+ A A IPV EY P +K+A+ G G
Sbjct: 60 EQYHPAAAAIEELFFGKNVNTALTVGQARGVVLLTLAQAGIPVYEYKPLQVKQALAGYGG 119
Query: 121 GDKKQIHMMLKMLMPESFFKGK 142
DK+Q+ M+++ +
Sbjct: 120 ADKRQMQEMVRLTLRLPAIPRP 141
>gi|163869138|ref|YP_001610377.1| Holliday junction resolvase [Bartonella tribocorum CIP 105476]
gi|161018824|emb|CAK02382.1| Holliday junction nuclease ruvC [Bartonella tribocorum CIP 105476]
Length = 177
Score = 141 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 90/139 (64%), Positives = 115/139 (82%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M ++IRIIGIDPGLR TGWG++D+AG+ L FV++GT+ S V+ LA RLCQ+++GL++V+
Sbjct: 7 MAETIRIIGIDPGLRYTGWGVIDLAGNRLQFVAAGTVSSDVQCDLASRLCQIHKGLSEVV 66
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
+ P EAAVE VFVNKDA ATLKLGQARAIA+L PA A PV EYAPN +KK+VIGVGH
Sbjct: 67 HQFMPHEAAVEHVFVNKDATATLKLGQARAIALLVPAQANCPVFEYAPNKVKKSVIGVGH 126
Query: 121 GDKKQIHMMLKMLMPESFF 139
G K+QIHMM+K+L+P + F
Sbjct: 127 GAKEQIHMMVKVLLPRAEF 145
>gi|87118958|ref|ZP_01074856.1| crossover junction endodeoxyribonuclease RuvC [Marinomonas sp.
MED121]
gi|86165349|gb|EAQ66616.1| crossover junction endodeoxyribonuclease RuvC [Marinomonas sp.
MED121]
Length = 183
Score = 140 bits (354), Expect = 5e-32, Method: Composition-based stats.
Identities = 69/156 (44%), Positives = 103/156 (66%), Gaps = 1/156 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
RI+ IDPG R TG+GI+DV G + +V SG I LA RL +Y +T+++ ++P
Sbjct: 3 RILAIDPGSRITGFGIIDVQGQQIQYVDSGCIRLP-DAVLAERLKNIYTNVTELLSRYQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
E A+E+VF+ K+A + LKLGQAR AI++ A+A + V+EYA +K++V+G G DK+Q
Sbjct: 62 HEFAIEEVFLAKNANSALKLGQARGAAIVAAAMAGLEVAEYAAKRVKQSVVGSGSADKEQ 121
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSG 161
+ M+++L+ DAADALAIA+CHA+ S
Sbjct: 122 VQQMVQLLLKLEKAPQADAADALAIAMCHAHTRTSS 157
>gi|148284887|ref|YP_001248977.1| Holliday junction resolvase [Orientia tsutsugamushi str. Boryong]
gi|146740326|emb|CAM80733.1| Crossover junction endodeoxyribonuclease [Orientia tsutsugamushi
str. Boryong]
Length = 171
Score = 140 bits (354), Expect = 5e-32, Method: Composition-based stats.
Identities = 54/149 (36%), Positives = 85/149 (57%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ I+GIDP L TGWG++ ++ + ++ SG I + + SL +L + + +I +
Sbjct: 13 VIILGIDPSLVSTGWGVISISDSMVNYIDSGVIKTVSKDSLVLKLGNISLMIEKLITRFN 72
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P A+E+VF+NK+ +++ L QAR + I SEYAPN IKKA++G G +K
Sbjct: 73 PFHVAMEEVFINKNYSSSVTLIQARGAIMSVIGRYNIDFSEYAPNKIKKAIVGAGKAEKH 132
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVC 153
Q+ M+K+LM KD +DALA A
Sbjct: 133 QVQQMVKLLMHIKKAISKDESDALATAYT 161
>gi|332305757|ref|YP_004433608.1| crossover junction endodeoxyribonuclease RuvC [Glaciecola
agarilytica 4H-3-7+YE-5]
gi|332173086|gb|AEE22340.1| crossover junction endodeoxyribonuclease RuvC [Glaciecola
agarilytica 4H-3-7+YE-5]
Length = 173
Score = 140 bits (354), Expect = 5e-32, Method: Composition-based stats.
Identities = 62/163 (38%), Positives = 102/163 (62%), Gaps = 2/163 (1%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ AG ++ SG I +LA RL Q+++G++ +I ++P
Sbjct: 3 IILGIDPGSRITGYGVIQRAGRQQQYLGSGCIRM-QGDALAPRLQQIFDGVSQLILQYKP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQVF+ K+ + LKLGQAR AI++ + + V+EY+ IK++V+G G+ K Q
Sbjct: 62 DMFAIEQVFMAKNPDSALKLGQARGAAIVAASNQGLDVAEYSARQIKQSVVGNGNAQKTQ 121
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
+ M+ ++ DAADALA+A+CH++ + K+A Q
Sbjct: 122 VQHMVTFILKLPGTPQADAADALAVALCHSHSEEN-LIKMAGQ 163
>gi|218666715|ref|YP_002424574.1| crossover junction endodeoxyribonuclease RuvC [Acidithiobacillus
ferrooxidans ATCC 23270]
gi|218518928|gb|ACK79514.1| crossover junction endodeoxyribonuclease RuvC [Acidithiobacillus
ferrooxidans ATCC 23270]
Length = 166
Score = 140 bits (354), Expect = 5e-32, Method: Composition-based stats.
Identities = 68/159 (42%), Positives = 96/159 (60%), Gaps = 2/159 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAG-DNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+RIIGIDPG RTG+GI++ L V+ G + Q R+ +Y L +I +
Sbjct: 1 MRIIGIDPGSLRTGYGIIESDAAGELRHVAHGCLNVS-GQPFLERIGAIYRELKQIIGTY 59
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
PEEAA+EQVF+ ++A + LKLGQAR A+++ A +PV EY IKKA +G GH K
Sbjct: 60 HPEEAAIEQVFMARNADSALKLGQARGAALVALLEAGLPVEEYTALQIKKAAVGGGHAAK 119
Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGY 162
+Q+ M++ L+ S DAADALA A+CHA+H +
Sbjct: 120 EQVQSMVRWLLKLSENPQADAADALACAICHAHHGRTRQ 158
>gi|187611418|sp|A9IYK9|RUVC_BART1 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
Length = 171
Score = 140 bits (354), Expect = 5e-32, Method: Composition-based stats.
Identities = 90/139 (64%), Positives = 115/139 (82%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M ++IRIIGIDPGLR TGWG++D+AG+ L FV++GT+ S V+ LA RLCQ+++GL++V+
Sbjct: 1 MAETIRIIGIDPGLRYTGWGVIDLAGNRLQFVAAGTVSSDVQCDLASRLCQIHKGLSEVV 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
+ P EAAVE VFVNKDA ATLKLGQARAIA+L PA A PV EYAPN +KK+VIGVGH
Sbjct: 61 HQFMPHEAAVEHVFVNKDATATLKLGQARAIALLVPAQANCPVFEYAPNKVKKSVIGVGH 120
Query: 121 GDKKQIHMMLKMLMPESFF 139
G K+QIHMM+K+L+P + F
Sbjct: 121 GAKEQIHMMVKVLLPRAEF 139
>gi|293390519|ref|ZP_06634853.1| Holliday junction resolvase [Aggregatibacter actinomycetemcomitans
D7S-1]
gi|290951053|gb|EFE01172.1| Holliday junction resolvase [Aggregatibacter actinomycetemcomitans
D7S-1]
Length = 190
Score = 140 bits (354), Expect = 5e-32, Method: Composition-based stats.
Identities = 66/163 (40%), Positives = 102/163 (62%), Gaps = 1/163 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G +L ++ SG I + V + L RL ++Y +T++I ++P
Sbjct: 3 IILGIDPGSRVTGYGVIRQNGRHLEYLGSGAIRTQV-EDLPTRLKRIYASVTEIITQFQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQVF+ K+A + LKLGQAR AI++ +PV EYA IK+ V+G+G DK Q
Sbjct: 62 DMFAIEQVFMAKNADSALKLGQARGTAIVAAVNHNLPVFEYAARLIKQTVVGIGSADKVQ 121
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
+ M+ ++ S DAADALAIA+ HA+ ++ +S
Sbjct: 122 VQEMVTRILKLSDKPQADAADALAIAITHAHSIQHSFHVASSA 164
>gi|229846402|ref|ZP_04466510.1| Holliday junction resolvase [Haemophilus influenzae 7P49H1]
gi|229810495|gb|EEP46213.1| Holliday junction resolvase [Haemophilus influenzae 7P49H1]
Length = 190
Score = 140 bits (354), Expect = 5e-32, Method: Composition-based stats.
Identities = 54/136 (39%), Positives = 86/136 (63%), Gaps = 1/136 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G +L ++ SG I + V + L RL ++Y G+T++I ++P
Sbjct: 3 IILGIDPGSRITGYGVIRQTGRHLEYLGSGAIRTQV-EDLPTRLKRIYAGVTEIITQFQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQVF+ K+A + LKLGQAR AI++ +PV EYA +K+ V+G+G DK Q
Sbjct: 62 DMFAIEQVFMAKNADSALKLGQARGTAIVAAVNHDLPVFEYAARLVKQTVVGIGSADKVQ 121
Query: 126 IHMMLKMLMPESFFKG 141
+ M+ ++ S
Sbjct: 122 VQEMVTRILKLSDKPQ 137
>gi|325914900|ref|ZP_08177233.1| Holliday junction endonuclease RuvC [Xanthomonas vesicatoria ATCC
35937]
gi|325538888|gb|EGD10551.1| Holliday junction endonuclease RuvC [Xanthomonas vesicatoria ATCC
35937]
Length = 146
Score = 140 bits (354), Expect = 5e-32, Method: Composition-based stats.
Identities = 60/144 (41%), Positives = 85/144 (59%), Gaps = 1/144 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
RI+GIDPG +RTG GI+DV G V ++ A RL +L GL ++I+ +R
Sbjct: 3 RILGIDPGSQRTGVGIIDVDEGGRSRHVHHAPLLLLGEGDFAQRLKRLLHGLGELIETYR 62
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+E A+E+VF+ K A + LKLG AR AI + + +PV EYA IK A++G G DK
Sbjct: 63 PDEVAIEKVFMGKSADSALKLGHARGAAICAVVMRDLPVHEYAATEIKLALVGKGGADKV 122
Query: 125 QIHMMLKMLMPESFFKGKDAADAL 148
Q+ M+ +++ DAADAL
Sbjct: 123 QVQHMVGIMLNLKGKLQADAADAL 146
>gi|160947138|ref|ZP_02094305.1| hypothetical protein PEPMIC_01070 [Parvimonas micra ATCC 33270]
gi|158446272|gb|EDP23267.1| hypothetical protein PEPMIC_01070 [Parvimonas micra ATCC 33270]
Length = 182
Score = 140 bits (354), Expect = 5e-32, Method: Composition-based stats.
Identities = 44/138 (31%), Positives = 71/138 (51%), Gaps = 1/138 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ I G+DPG+ G+GI++ G+ + + G I + L RL + E L +I+
Sbjct: 19 VIIFGLDPGIAIVGYGIIEAIGNRVRLIDYGVIETKAGIPLPDRLKIIDEELNRLIELHN 78
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
+E A+E++F NK+ + + QAR + ILS I EY P +K+A+ G G DKK
Sbjct: 79 VDELAIEELFFNKNVKTVINVAQARGVEILSFIKKNILAYEYTPLQVKQAITGYGRADKK 138
Query: 125 QIHMMLKMLMPESF-FKG 141
Q+ +KM+ K
Sbjct: 139 QMQESVKMIFKLKAVPKP 156
>gi|319409330|emb|CBI82974.1| Holliday junction nuclease ruvC [Bartonella schoenbuchensis R1]
Length = 167
Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats.
Identities = 94/139 (67%), Positives = 116/139 (83%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M K+IRIIGIDPGL+RTGWG+VD+ G++L F++SGT+ S + LA RL QL++GL+DV+
Sbjct: 1 MVKAIRIIGIDPGLQRTGWGVVDLLGNHLHFIASGTLRSDAKSHLASRLYQLHQGLSDVV 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
+ P EAAVE VFVNKDA ATLKLGQARAIA+L PA A +PVSEYAPNTIKK+VIGVGH
Sbjct: 61 HRFMPHEAAVENVFVNKDATATLKLGQARAIALLVPAQAGLPVSEYAPNTIKKSVIGVGH 120
Query: 121 GDKKQIHMMLKMLMPESFF 139
G K+QIHMM+K L+P + F
Sbjct: 121 GAKEQIHMMVKTLLPRAEF 139
>gi|119774976|ref|YP_927716.1| Holliday junction resolvase [Shewanella amazonensis SB2B]
gi|166233296|sp|A1S6P0|RUVC_SHEAM RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|119767476|gb|ABM00047.1| crossover junction endodeoxyribonuclease RuvC [Shewanella
amazonensis SB2B]
Length = 173
Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats.
Identities = 61/155 (39%), Positives = 100/155 (64%), Gaps = 1/155 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+G+DPG R TG+G++ G + ++ SG I + + L RL Q+++GL ++I+ ++P
Sbjct: 3 IILGVDPGSRITGYGVIQCQGRHQLYLGSGCIRTSSDE-LPDRLKQIFDGLQEIIRQYQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+E+VF+ K+A + LKLGQAR AI++ +A +PV+EY+ IK AV+G G K Q
Sbjct: 62 SQFAIERVFMAKNADSALKLGQARGAAIVAATVAGLPVAEYSATQIKNAVVGTGRAQKAQ 121
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
+ M++ ++ DAADALA+A+CH + S
Sbjct: 122 VQHMVQQMLKLPAAPQADAADALAVAMCHYHTHQS 156
>gi|256827687|ref|YP_003151646.1| crossover junction endodeoxyribonuclease RuvC [Cryptobacterium
curtum DSM 15641]
gi|256583830|gb|ACU94964.1| crossover junction endodeoxyribonuclease RuvC [Cryptobacterium
curtum DSM 15641]
Length = 174
Score = 140 bits (353), Expect = 6e-32, Method: Composition-based stats.
Identities = 51/141 (36%), Positives = 79/141 (56%)
Query: 3 KSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
+S ++GIDPGL TGWGIV+ G L + G IV+ Q L+ RL ++YE + VI +
Sbjct: 2 ESRIVMGIDPGLAHTGWGIVNQTGLRLSCEAYGCIVTTAAQPLSSRLNKIYEQIGAVINH 61
Query: 63 WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
+RP +E ++ + + GQAR A+++ A +I V EY P+ IK AV+G G D
Sbjct: 62 YRPACVGIETIWFGNNVTSAFATGQARGAALVACAQGKIQVGEYTPSAIKMAVVGTGSAD 121
Query: 123 KKQIHMMLKMLMPESFFKGKD 143
K Q+ M+ ++ + D
Sbjct: 122 KHQVQYMVAQILGLATEPQPD 142
>gi|77360815|ref|YP_340390.1| Holliday junction nuclease [Pseudoalteromonas haloplanktis TAC125]
gi|110282924|sp|Q3IIJ0|RUVC_PSEHT RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|76875726|emb|CAI86947.1| Holliday junction nuclease [Pseudoalteromonas haloplanktis TAC125]
Length = 174
Score = 140 bits (353), Expect = 6e-32, Method: Composition-based stats.
Identities = 67/163 (41%), Positives = 97/163 (59%), Gaps = 2/163 (1%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G+V G ++ SG I RL +Y+G+T +I+ + P
Sbjct: 3 IILGIDPGSRLTGYGVVAHQGSKFTYLGSGCIKL-ADHEFHIRLKMIYQGITQLIEQFSP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
E A+E+VF+ + + LKLGQAR AI+ A+A +PV EY+ IK+AV+G G DK Q
Sbjct: 62 ETFAIEKVFMAHNPDSALKLGQARGAAIVGAAMADLPVFEYSARQIKQAVVGNGGADKTQ 121
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
+ M+K ++ DAADALAIA+CHA+ + K+A
Sbjct: 122 VQHMVKNILKLPGTPQADAADALAIAICHAHSEQN-LIKLAGS 163
>gi|332288347|ref|YP_004419199.1| Holliday junction resolvase [Gallibacterium anatis UMN179]
gi|330431243|gb|AEC16302.1| Holliday junction resolvase [Gallibacterium anatis UMN179]
Length = 187
Score = 140 bits (353), Expect = 6e-32, Method: Composition-based stats.
Identities = 65/154 (42%), Positives = 99/154 (64%), Gaps = 1/154 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G L ++ SG I + V L RL ++Y G+T++I ++P
Sbjct: 3 IILGIDPGSRLTGYGVIKQQGKQLTYLGSGVIRTAV-DDLPSRLQRIYSGVTEIITQFQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ ++EQVF+ K+A + LKLGQAR +AI++ +PV EYA +K+ V+G+G DKKQ
Sbjct: 62 DMLSIEQVFMAKNADSALKLGQARGVAIVAATNQNLPVFEYAARLVKQTVVGIGSADKKQ 121
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHAN 159
+ M+ ++ S DAADALAIA+ HA+
Sbjct: 122 VQHMVTRILHLSSSPQADAADALAIAITHAHTMQ 155
>gi|332670540|ref|YP_004453548.1| crossover junction endodeoxyribonuclease RuvC [Cellulomonas fimi
ATCC 484]
gi|332339578|gb|AEE46161.1| crossover junction endodeoxyribonuclease RuvC [Cellulomonas fimi
ATCC 484]
Length = 188
Score = 140 bits (353), Expect = 6e-32, Method: Composition-based stats.
Identities = 52/155 (33%), Positives = 85/155 (54%), Gaps = 2/155 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVD-VAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R++G+DPGL R G G+VD + G V+ G S V + RL + L + ++
Sbjct: 1 MRVLGVDPGLTRCGLGVVDGLPGRRARLVAVGVARSPVDDEVDQRLLTIEAQLEEWLEEH 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
P+ AVE+VF + + Q +A+++ A RIPV+ + P+ +K AV G G +K
Sbjct: 61 APDAVAVERVFAQHNVRTVMGTAQVAGLAMVAAARRRIPVALHTPSEVKAAVTGNGRAEK 120
Query: 124 KQIHMMLKMLMPESF-FKGKDAADALAIAVCHAYH 157
Q+ M++ L+ + DAADALA+A+CH +
Sbjct: 121 AQVQTMVQRLLGLEELPRPADAADALALAICHLWR 155
>gi|298242493|ref|ZP_06966300.1| crossover junction endodeoxyribonuclease RuvC [Ktedonobacter
racemifer DSM 44963]
gi|297555547|gb|EFH89411.1| crossover junction endodeoxyribonuclease RuvC [Ktedonobacter
racemifer DSM 44963]
Length = 182
Score = 140 bits (353), Expect = 7e-32, Method: Composition-based stats.
Identities = 48/138 (34%), Positives = 82/138 (59%), Gaps = 2/138 (1%)
Query: 6 RI-IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
RI +GIDPG G+ +V G NL ++ I + + LA RL +Y L+++I ++
Sbjct: 14 RIALGIDPGTAIVGYAVVMAQGSNLSLLACDVITTPAKTPLAQRLQTIYAELSNIIATFK 73
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+EAA+E++F K+A + +G AR +A+L+ A + V+EY P +K+AV G G +K
Sbjct: 74 PQEAAIEELFFAKNARTAMTVGHARGVAMLALANGGLTVAEYKPKQVKQAVTGYGDANKD 133
Query: 125 QIHMMLKMLMPE-SFFKG 141
Q+ M+++L+ + K
Sbjct: 134 QVGEMVRILLKLTAVPKP 151
>gi|109899253|ref|YP_662508.1| crossover junction endodeoxyribonuclease RuvC [Pseudoalteromonas
atlantica T6c]
gi|123064359|sp|Q15RN4|RUVC_PSEA6 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|109701534|gb|ABG41454.1| crossover junction endodeoxyribonuclease RuvC [Pseudoalteromonas
atlantica T6c]
Length = 173
Score = 140 bits (353), Expect = 7e-32, Method: Composition-based stats.
Identities = 62/163 (38%), Positives = 102/163 (62%), Gaps = 2/163 (1%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ AG ++ SG I +LA RL Q+++G++ +I ++P
Sbjct: 3 IILGIDPGSRITGYGVIQRAGRQQQYLGSGCIRM-QGDALAPRLQQIFDGVSQLILQYKP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQVF+ K+ + LKLGQAR AI++ + + V+EY+ IK++V+G G+ K Q
Sbjct: 62 DMFAIEQVFMAKNPDSALKLGQARGAAIVAASNQGLDVAEYSARQIKQSVVGNGNAQKSQ 121
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
+ M+ ++ DAADALA+A+CH++ N K++ Q
Sbjct: 122 VQHMVTFILKLPGTPQADAADALAVALCHSHT-NENLIKMSGQ 163
>gi|300112851|ref|YP_003759426.1| crossover junction endodeoxyribonuclease RuvC [Nitrosococcus
watsonii C-113]
gi|299538788|gb|ADJ27105.1| crossover junction endodeoxyribonuclease RuvC [Nitrosococcus
watsonii C-113]
Length = 174
Score = 140 bits (353), Expect = 7e-32, Method: Composition-based stats.
Identities = 52/135 (38%), Positives = 88/135 (65%), Gaps = 1/135 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
RI+GIDPG R TG+G+++ ++++G I LA RL Q+++G+T++I+++ P
Sbjct: 3 RILGIDPGSRITGYGLIETNNKKTIYIAAGCIR-AGGGGLAERLGQIFQGITEIIQDYHP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+E AVEQVF++++ + LKLGQAR AI + A +P+ EY P+ +K+AV+G G K Q
Sbjct: 62 DEVAVEQVFMHQNPSSALKLGQARGAAICAAVNAVLPIFEYTPSQVKQAVVGRGDAAKSQ 121
Query: 126 IHMMLKMLMPESFFK 140
+ M+++L+
Sbjct: 122 VQYMVRLLLKLPAEP 136
>gi|83647603|ref|YP_436038.1| crossover junction endodeoxyribonuclease RuvC [Hahella chejuensis
KCTC 2396]
gi|123767362|sp|Q2SCL1|RUVC_HAHCH RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|83635646|gb|ABC31613.1| crossover junction endodeoxyribonuclease RuvC [Hahella chejuensis
KCTC 2396]
Length = 172
Score = 140 bits (353), Expect = 7e-32, Method: Composition-based stats.
Identities = 68/164 (41%), Positives = 107/164 (65%), Gaps = 2/164 (1%)
Query: 4 SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
++++GIDPG R TG+G+V+ G +V+SG I ++LA RL +Y G+T V+ +
Sbjct: 1 MLKVLGIDPGSRFTGYGVVEWGGGKPRYVASGCIRV-TGETLAERLRCIYLGVTQVVSMY 59
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
P+EAA+EQVF+ ++A + LKLGQAR +AIL+ A + V+EY+ +K++V+G G+ +K
Sbjct: 60 APDEAAIEQVFMARNADSALKLGQARGVAILAMAEQGLQVAEYSAKKVKQSVVGKGNAEK 119
Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
Q+ M++ ++ DAADALAIAVCH + S +I S
Sbjct: 120 WQVQHMMQAMLDLQAKPQADAADALAIAVCHLHTQQS-LMRIGS 162
>gi|42527370|ref|NP_972468.1| crossover junction endodeoxyribonuclease RuvC [Treponema denticola
ATCC 35405]
gi|81570208|sp|Q73LJ8|RUVC_TREDE RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|41817955|gb|AAS12379.1| crossover junction endodeoxyribonuclease RuvC [Treponema denticola
ATCC 35405]
Length = 178
Score = 140 bits (353), Expect = 7e-32, Method: Composition-based stats.
Identities = 45/144 (31%), Positives = 88/144 (61%), Gaps = 2/144 (1%)
Query: 2 RKSIR--IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDV 59
+K++R +IGIDPGL TG+GI+ + + + G+I + RL ++++ ++++
Sbjct: 10 KKNLRPCVIGIDPGLANTGYGIISFSNNRFECIEYGSISTEPHLLQGERLLKIFDKVSEL 69
Query: 60 IKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVG 119
I+ +RP+EA +E ++ K+A + + + +AR + +L+ A + V EYAPN+IKKAV G+
Sbjct: 70 IEKYRPKEAGIETLYFAKNATSAMSVSEARGVVLLALAQGGVRVGEYAPNSIKKAVTGIA 129
Query: 120 HGDKKQIHMMLKMLMPESFFKGKD 143
+K+Q+ +K+++ D
Sbjct: 130 QAEKRQVQEAVKLILGLKEIPRPD 153
>gi|330444139|ref|YP_004377125.1| crossover junction endodeoxyribonuclease RuvC [Chlamydophila
pecorum E58]
gi|328807249|gb|AEB41422.1| crossover junction endodeoxyribonuclease RuvC [Chlamydophila
pecorum E58]
Length = 168
Score = 140 bits (353), Expect = 8e-32, Method: Composition-based stats.
Identities = 52/157 (33%), Positives = 88/157 (56%), Gaps = 4/157 (2%)
Query: 7 IIGIDPGLRRTGWGIVDVAGD-NLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+G+DPG G+ I+ V L S G + + L+ R +L+ ++ V+++ P
Sbjct: 5 IMGVDPGTIAAGYAILRVEARYQLSAHSYGVVRLSPKLLLSQRYKKLFLEISKVLEDVSP 64
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ +E FV+K+ +T+KLG AR + +L+ AL IP+ EY PN KKAV+G G K+Q
Sbjct: 65 DVLVLETQFVSKNPQSTIKLGMARGVVLLAAALKEIPIVEYTPNVAKKAVVGRGGASKQQ 124
Query: 126 IHMMLKMLMPESF---FKGKDAADALAIAVCHAYHAN 159
+ +M+ ++ +D ADA A+A+CH + +
Sbjct: 125 VQLMVSKMLGLPELVQPDCEDIADAFALAICHTHMHS 161
>gi|149175962|ref|ZP_01854579.1| crossover junction endodeoxyribonuclease ruvC [Planctomyces maris
DSM 8797]
gi|148845116|gb|EDL59462.1| crossover junction endodeoxyribonuclease ruvC [Planctomyces maris
DSM 8797]
Length = 170
Score = 140 bits (352), Expect = 9e-32, Method: Composition-based stats.
Identities = 47/161 (29%), Positives = 81/161 (50%), Gaps = 2/161 (1%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
+ ++R +GIDPGL RTG+ ++ + G I S +LA R+ ++ G+ +VI
Sbjct: 6 LTTAVRFLGIDPGLNRTGYALLQQSVKGPVLCEGGIIRSNQEANLAARVHEIASGIREVI 65
Query: 61 KNWRPEEAAVEQVFVN-KDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVG 119
++P+ +EQVF + +++ + AR + + A +PV Y P IKK + G G
Sbjct: 66 AEYQPDVMVIEQVFTTPRFPKSSIIMAHARGAILFAAHDAGVPVVHYTPTQIKKLITGSG 125
Query: 120 HGDKKQIHMMLKMLMPESFF-KGKDAADALAIAVCHAYHAN 159
K+Q+ +K + + D ADA A A+CH +
Sbjct: 126 RASKEQMQHAIKTELGLKAILEPNDVADAFAAALCHYHTIR 166
>gi|148825407|ref|YP_001290160.1| Holliday junction resolvase [Haemophilus influenzae PittEE]
gi|166233195|sp|A5UAH6|RUVC_HAEIE RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|148715567|gb|ABQ97777.1| Holliday junction resolvase [Haemophilus influenzae PittEE]
gi|309972526|gb|ADO95727.1| Holliday junction resolvasome, endodeoxyribonuclease subunit
[Haemophilus influenzae R2846]
Length = 190
Score = 140 bits (352), Expect = 9e-32, Method: Composition-based stats.
Identities = 54/136 (39%), Positives = 86/136 (63%), Gaps = 1/136 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G +L ++ SG I + V + L RL ++Y G+T++I ++P
Sbjct: 3 IILGIDPGSRVTGYGVIRQTGRHLEYLGSGAIRTQV-EDLPTRLKRIYAGVTEIITQFQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQVF+ K+A + LKLGQAR AI++ +PV EYA +K+ V+G+G DK Q
Sbjct: 62 DMFAIEQVFMAKNADSALKLGQARGTAIVAAVNHDLPVFEYAARLVKQTVVGIGSADKVQ 121
Query: 126 IHMMLKMLMPESFFKG 141
+ M+ ++ S
Sbjct: 122 VQEMVTRILKLSDKPQ 137
>gi|322378947|ref|ZP_08053361.1| Crossover junction endodeoxyribonuclease RuvC [Helicobacter suis
HS1]
gi|322379801|ref|ZP_08054098.1| Holliday junction resolvase [Helicobacter suis HS5]
gi|321147769|gb|EFX42372.1| Holliday junction resolvase [Helicobacter suis HS5]
gi|321148623|gb|EFX43109.1| Crossover junction endodeoxyribonuclease RuvC [Helicobacter suis
HS1]
Length = 165
Score = 140 bits (352), Expect = 9e-32, Method: Composition-based stats.
Identities = 51/157 (32%), Positives = 79/157 (50%), Gaps = 6/157 (3%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
I+GIDPG + G+GI++ G L V +G I + L ++ ++ G ++K +
Sbjct: 12 ILGIDPGSSKCGYGIIE--GGKL--VGAGFIHIKAK-HLQAQILEVVAGFEQILKTYAIT 66
Query: 67 EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
E A+E +F + LKL Q R L SEY P +KKA+ G G K+Q+
Sbjct: 67 EVAMEDIFYAYNPKTVLKLAQFRGALGLKILQEMGHFSEYTPLQVKKAITGHGKASKEQV 126
Query: 127 HMMLKMLMP-ESFFKGKDAADALAIAVCHAYHANSGY 162
M+K ++ +S K D DA+AIA+ HA S +
Sbjct: 127 AFMVKKILGIKSAIKPLDITDAIAIALTHAQQNKSPF 163
>gi|302384292|ref|YP_003820115.1| crossover junction endodeoxyribonuclease RuvC [Brevundimonas
subvibrioides ATCC 15264]
gi|302194920|gb|ADL02492.1| crossover junction endodeoxyribonuclease RuvC [Brevundimonas
subvibrioides ATCC 15264]
Length = 179
Score = 140 bits (352), Expect = 9e-32, Method: Composition-based stats.
Identities = 65/141 (46%), Positives = 89/141 (63%), Gaps = 6/141 (4%)
Query: 1 MRKSI------RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYE 54
M + RI+G+DPGLRRTGWG+V G L +++ G + L+ RL L E
Sbjct: 1 MTNVMIQNGPTRILGLDPGLRRTGWGVVVAEGSRLRWIAHGVVTPPETAPLSERLLWLLE 60
Query: 55 GLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKA 114
+ +V +EAA+E+VFVN + +TLKLG ARA +L+PA A + V+EY+PN IKKA
Sbjct: 61 KVGEVCAAHDCDEAAIEEVFVNVNPSSTLKLGHARAAVMLAPARAGLSVAEYSPNLIKKA 120
Query: 115 VIGVGHGDKKQIHMMLKMLMP 135
V+G GH DK QI M+K L+P
Sbjct: 121 VVGAGHADKTQIAFMVKRLLP 141
>gi|261868503|ref|YP_003256425.1| Holliday junction resolvase [Aggregatibacter actinomycetemcomitans
D11S-1]
gi|261413835|gb|ACX83206.1| Holliday junction resolvase [Aggregatibacter actinomycetemcomitans
D11S-1]
Length = 190
Score = 140 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 66/163 (40%), Positives = 102/163 (62%), Gaps = 1/163 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G +L ++ SG I + V + L RL ++Y +T++I ++P
Sbjct: 3 IILGIDPGSRVTGYGVIRQNGRHLEYLGSGAIRTQV-EDLPTRLKRIYASVTEIITQFQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQVF+ K+A + LKLGQAR AI++ +PV EYA IK+ V+G+G DK Q
Sbjct: 62 DMFAIEQVFMAKNADSALKLGQARGTAIVAAVNHNLPVFEYAARLIKQTVVGIGSADKVQ 121
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
+ M+ ++ S DAADALAIA+ HA+ ++ +S
Sbjct: 122 VQEMVTRILKLSDKPQADAADALAIAITHAHSIQHSFHVASSA 164
>gi|163796367|ref|ZP_02190328.1| Holliday junction resolvasome, endonuclease subunit [alpha
proteobacterium BAL199]
gi|159178509|gb|EDP63051.1| Holliday junction resolvasome, endonuclease subunit [alpha
proteobacterium BAL199]
Length = 198
Score = 140 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 75/152 (49%), Positives = 109/152 (71%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+R+IG+DPGLR TGWG++++ G L ++ GT+ S +A RL QLY+G+ ++I+ W
Sbjct: 1 MRLIGLDPGLRNTGWGVIEMDGHALRHIADGTVHSDGDAPIATRLVQLYDGVLELIERWN 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P EAAVE+ FVN++ +TLKLG AR + +L+PA A + VSEYAP +KK+V+G G K+
Sbjct: 61 PSEAAVEETFVNRNPESTLKLGLARGVVLLAPAKAGLLVSEYAPKRVKKSVVGTGSASKE 120
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
Q+ M+ L+P + G DAADALA+AVCHA+
Sbjct: 121 QVQAMIATLLPGARIAGADAADALAVAVCHAH 152
>gi|269926073|ref|YP_003322696.1| crossover junction endodeoxyribonuclease RuvC [Thermobaculum
terrenum ATCC BAA-798]
gi|269789733|gb|ACZ41874.1| crossover junction endodeoxyribonuclease RuvC [Thermobaculum
terrenum ATCC BAA-798]
Length = 171
Score = 140 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 47/137 (34%), Positives = 75/137 (54%)
Query: 4 SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
SIR++G+DPG G+G+V G + G I + + L RL ++E L ++I+
Sbjct: 2 SIRVLGLDPGTAIVGFGLVIFDGQSYQPEKYGVIRTPSKTPLPHRLLMIHEQLDELIEEL 61
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
+PE AVE+VF + L +G AR + +L+ A +P+ EY P +K+A+IG G +K
Sbjct: 62 KPEHVAVEEVFFARATTTALAVGHARGVILLTAAEHNLPIFEYTPLQVKQAIIGYGGAEK 121
Query: 124 KQIHMMLKMLMPESFFK 140
KQI +K L+
Sbjct: 122 KQIQQFIKNLLRLESIP 138
>gi|29338972|gb|AAO76771.1| crossover junction endodeoxyribonuclease ruvC [Bacteroides
thetaiotaomicron VPI-5482]
Length = 169
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 45/146 (30%), Positives = 75/146 (51%), Gaps = 3/146 (2%)
Query: 17 TGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVN 76
G+G++ V G ++ G I + +L ++E + +I+++ P+E A+E F
Sbjct: 1 MGYGVLRVKGTKPEMIAMGIIDLRKFANHYLKLRHIHERVLSIIESYLPDELAIEAPFFG 60
Query: 77 KDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLM-- 134
K+ + LKLG+A+ +A+ IP++EYAP IK A+ G G K+Q+ ML+ ++
Sbjct: 61 KNVQSMLKLGRAQGVAMAVALSRDIPITEYAPLKIKMAITGNGQASKEQVADMLQRMLHF 120
Query: 135 -PESFFKGKDAADALAIAVCHAYHAN 159
E DA D LA A CH
Sbjct: 121 PKEEMPTFMDATDGLAAAYCHFLQMG 146
>gi|146338240|ref|YP_001203288.1| Holliday junction resolvase [Bradyrhizobium sp. ORS278]
gi|166231583|sp|A4YMC5|RUVC_BRASO RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|146191046|emb|CAL75051.1| Crossover junction endodeoxyribonuclease ruvC (Holliday junction
nuclease ruvC) [Bradyrhizobium sp. ORS278]
Length = 175
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 83/155 (53%), Positives = 111/155 (71%)
Query: 11 DPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAV 70
DPGLRRTGWG+++ G+ L +V G++ LA RL ++EGL V+ +++P EAAV
Sbjct: 16 DPGLRRTGWGVIESEGNRLIYVGCGSVEPPDDLPLASRLLAIHEGLAKVLADFQPLEAAV 75
Query: 71 EQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMML 130
EQ FVNKD VATLKLGQAR IA+L+PA+ I V+EYAPN +KK V+G GH DK QI +ML
Sbjct: 76 EQTFVNKDGVATLKLGQARGIAMLAPAMFGITVAEYAPNQVKKTVVGAGHADKGQIAVML 135
Query: 131 KMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
K+L+P++ DAADALAIA+ HA+H ++
Sbjct: 136 KILLPKAEPPSADAADALAIAITHAHHRQGQALRM 170
>gi|258593139|emb|CBE69450.1| Crossover junction endodeoxyribonuclease ruvC (Holliday junction
nuclease ruvC) [NC10 bacterium 'Dutch sediment']
Length = 166
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 54/175 (30%), Positives = 87/175 (49%), Gaps = 22/175 (12%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ ++G+DPG TG+G+V + L V G+I++ R RL Q+Y L ++I+ +
Sbjct: 1 MLVLGVDPGAGATGYGMVARSDGALRAVEYGSIITTPRDPFPARLQQIYSRLAELIRCHQ 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
PE AA+E + K+ + KLGQAR +AIL A + V+EY+P IK AV G G K
Sbjct: 61 PEWAAIESLIFAKNVQSAFKLGQARGVAILVAAQNGLTVAEYSPLQIKSAVTGYGAAGKF 120
Query: 125 QIHMMLKMLMPESFFKGKDAADALAI-----------AVCHAYHANSGYYKIASQ 168
Q+ M++ L+ I A+CH + A +++ +
Sbjct: 121 QVQQMVQSLLGLKEP----------IRSADAADALAVAICHHHSAGL-LHRLGGR 164
>gi|315634724|ref|ZP_07890008.1| crossover junction endodeoxyribonuclease RuvC [Aggregatibacter
segnis ATCC 33393]
gi|315476672|gb|EFU67420.1| crossover junction endodeoxyribonuclease RuvC [Aggregatibacter
segnis ATCC 33393]
Length = 190
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 68/166 (40%), Positives = 102/166 (61%), Gaps = 3/166 (1%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G L ++ SG I + V L RL ++Y G+T++I ++P
Sbjct: 3 IILGIDPGSRVTGYGVIRQTGRQLEYLGSGAIRTQV-DDLPTRLKRIYAGVTEIITQFQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQVF+ K+A + LKLGQAR AI++ +PV EYA IK+ V+G+G DK Q
Sbjct: 62 DMFAIEQVFMAKNADSALKLGQARGTAIVAAVNHDLPVFEYAARLIKQTVVGIGSADKIQ 121
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYY--KIASQD 169
+ M+ ++ S DAADALAIA+ HA+ ++ A Q+
Sbjct: 122 VQDMVTRILKLSDKPQADAADALAIAITHAHSIQHSFHVADAAGQN 167
>gi|251793067|ref|YP_003007793.1| Holliday junction resolvase [Aggregatibacter aphrophilus NJ8700]
gi|247534460|gb|ACS97706.1| crossover junction endodeoxyribonuclease RuvC [Aggregatibacter
aphrophilus NJ8700]
Length = 190
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 65/164 (39%), Positives = 100/164 (60%), Gaps = 1/164 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G L ++ SG I + V L RL ++Y G+T++I ++P
Sbjct: 3 IILGIDPGSRVTGYGVIRQHGRQLEYLGSGAIRTQV-DDLPTRLKRIYAGVTEIITQFQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ +EQVF+ K+A + LKLGQAR AI++ +PV EYA IK+ V+G+G DK Q
Sbjct: 62 DMFVIEQVFMAKNADSALKLGQARGTAIVAAVNHDLPVFEYAARLIKQTVVGIGSADKIQ 121
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQD 169
+ M+ ++ S DAADALAIA+ HA+ ++ + +
Sbjct: 122 VQDMVMRILNLSDKPQADAADALAIAITHAHSIQHSFHVAGAVN 165
>gi|197121425|ref|YP_002133376.1| crossover junction endodeoxyribonuclease RuvC [Anaeromyxobacter sp.
K]
gi|238689869|sp|B4UFX9|RUVC_ANASK RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|196171274|gb|ACG72247.1| crossover junction endodeoxyribonuclease RuvC [Anaeromyxobacter sp.
K]
Length = 185
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 64/154 (41%), Positives = 86/154 (55%), Gaps = 2/154 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ ++GIDPG RR G+G+V G L V SG + +A RL ++ EGL +I R
Sbjct: 1 MIVLGIDPGSRRCGYGVVAREGARLTVVESGVL-VPGDLPMAQRLGRILEGLDALIARAR 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P EA+VE VF + L LGQAR +A+ + A A +PV EYAP+ +K A G G K
Sbjct: 60 PVEASVESVFSGASPRSALVLGQARGVALAAAARAGLPVFEYAPSEVKLAFTGNGRAGKD 119
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHA 158
Q+ +ML+ + D ADALAIAVCH
Sbjct: 120 QMLRTARMLLG-AAPDLSDEADALAIAVCHLARR 152
>gi|303250097|ref|ZP_07336299.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|307246068|ref|ZP_07528150.1| Crossover junction endodeoxyribonuclease ruvC [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|307250409|ref|ZP_07532356.1| Crossover junction endodeoxyribonuclease ruvC [Actinobacillus
pleuropneumoniae serovar 4 str. M62]
gi|307252791|ref|ZP_07534682.1| Crossover junction endodeoxyribonuclease ruvC [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|307255050|ref|ZP_07536868.1| Crossover junction endodeoxyribonuclease ruvC [Actinobacillus
pleuropneumoniae serovar 9 str. CVJ13261]
gi|307259486|ref|ZP_07541211.1| Crossover junction endodeoxyribonuclease ruvC [Actinobacillus
pleuropneumoniae serovar 11 str. 56153]
gi|302651160|gb|EFL81314.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|306853003|gb|EFM85226.1| Crossover junction endodeoxyribonuclease ruvC [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|306857538|gb|EFM89647.1| Crossover junction endodeoxyribonuclease ruvC [Actinobacillus
pleuropneumoniae serovar 4 str. M62]
gi|306859823|gb|EFM91845.1| Crossover junction endodeoxyribonuclease ruvC [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|306861923|gb|EFM93899.1| Crossover junction endodeoxyribonuclease ruvC [Actinobacillus
pleuropneumoniae serovar 9 str. CVJ13261]
gi|306866422|gb|EFM98285.1| Crossover junction endodeoxyribonuclease ruvC [Actinobacillus
pleuropneumoniae serovar 11 str. 56153]
Length = 192
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 65/154 (42%), Positives = 97/154 (62%), Gaps = 1/154 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G +L ++ SG I + V L RL ++Y G+T++I ++P
Sbjct: 3 IILGIDPGSRVTGYGVIRQTGRHLEYLGSGAIRTSV-DDLPTRLKRIYAGVTEIITQFQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQVF+ K+A + LKLGQAR AI++ +PV EYA +K+ V G+G DK Q
Sbjct: 62 DMFAIEQVFMAKNADSALKLGQARGTAIVAAVNHDLPVFEYAARLVKQTVTGIGSADKIQ 121
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHAN 159
+ M+ ++ S DAADALAIA+ HA+
Sbjct: 122 VQDMVTRMLQLSSKPQADAADALAIAITHAHSIQ 155
>gi|297623207|ref|YP_003704641.1| crossover junction endodeoxyribonuclease RuvC [Truepera
radiovictrix DSM 17093]
gi|297164387|gb|ADI14098.1| crossover junction endodeoxyribonuclease RuvC [Truepera
radiovictrix DSM 17093]
Length = 168
Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats.
Identities = 41/164 (25%), Positives = 76/164 (46%), Gaps = 1/164 (0%)
Query: 2 RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
R + ++G+DPGL G G V G + + + + + + RL LY ++
Sbjct: 5 RPPLTVVGLDPGLANLGLGAVREVGRAVTLLGAKLVRTSPSAEQSARLETLYREVSRFFA 64
Query: 62 NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
+ P+ A+E + ++ K+GQA + +L+ + V EY P +K+A++G G
Sbjct: 65 LYEPDVLALEGQYFHRQREVAFKVGQACGVCLLAAQEHGLEVVEYGPMQVKQALVGTGRA 124
Query: 122 DKKQIHMMLK-MLMPESFFKGKDAADALAIAVCHAYHANSGYYK 164
K Q+ M++ L + + ADALA+A+ H +
Sbjct: 125 SKAQVGYMVRATLGLKETPESHHVADALALALTHLSARQFQLLR 168
>gi|196228704|ref|ZP_03127570.1| crossover junction endodeoxyribonuclease RuvC [Chthoniobacter
flavus Ellin428]
gi|196226985|gb|EDY21489.1| crossover junction endodeoxyribonuclease RuvC [Chthoniobacter
flavus Ellin428]
Length = 167
Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats.
Identities = 56/158 (35%), Positives = 89/158 (56%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+R++ IDP LR TG+ I+D G+ + V+ G + + + L ++E +TD+I+ R
Sbjct: 1 MRVLSIDPSLRGTGFAILDGEGNKIRAVTYGVVKNAPALLPSGCLVAIHERITDLIREHR 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
PE AA E + + + LG AR A+L+ A +P+ EYAP +K++V+G G DK
Sbjct: 61 PECAAFEGIIYVQSHRVAITLGAARGAALLAAASLGLPIYEYAPRRVKQSVVGRGGADKG 120
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGY 162
Q+ M++ L+ + DAADALAI + H A S
Sbjct: 121 QVGFMVRALLGLTETPSPDAADALAIGLTHLQTAASAA 158
>gi|159043652|ref|YP_001532446.1| Holliday junction resolvase [Dinoroseobacter shibae DFL 12]
gi|189046065|sp|A8LHP8|RUVC_DINSH RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|157911412|gb|ABV92845.1| crossover junction endodeoxyribonuclease RuvC [Dinoroseobacter
shibae DFL 12]
Length = 176
Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 85/162 (52%), Positives = 109/162 (67%), Gaps = 1/162 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+R++GIDPGLR GWG++ V G L V++G I LA RL LY LT+V+
Sbjct: 1 MRVLGIDPGLRNLGWGVISVQGSRLRHVANGQIR-SEGSELAQRLLSLYRQLTEVVAGHA 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ AAVE FVNKDA TLKLGQAR IA+L PA A + V+EYAPN +KK+V+GVGH K+
Sbjct: 60 PDAAAVEHTFVNKDATGTLKLGQARGIALLVPAAAGLEVAEYAPNHVKKSVVGVGHAAKE 119
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
Q+ M+K+ +P G DAADALAIA+CHA+H S +A
Sbjct: 120 QVQHMVKLQLPGVVLAGADAADALAIAICHAHHLQSRGKVVA 161
>gi|90418965|ref|ZP_01226876.1| crossover junction endodeoxyribonuclease ruvC [Aurantimonas
manganoxydans SI85-9A1]
gi|90337045|gb|EAS50750.1| crossover junction endodeoxyribonuclease ruvC [Aurantimonas
manganoxydans SI85-9A1]
Length = 172
Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 109/164 (66%), Positives = 135/164 (82%)
Query: 2 RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
++IRIIGIDPGLRRTGWGIV+ G++L FV+SGT++S + LA RL LYEGLTDVI
Sbjct: 4 ERTIRIIGIDPGLRRTGWGIVETLGNSLRFVASGTVMSDGKMDLASRLRTLYEGLTDVIH 63
Query: 62 NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
+P+EAAVEQ FVNKDAVATLKLGQAR IA++ P+LA +PV+EYAPN +KKAVIGVGHG
Sbjct: 64 AQQPDEAAVEQTFVNKDAVATLKLGQARGIAMVVPSLAGLPVAEYAPNAVKKAVIGVGHG 123
Query: 122 DKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
+KKQIHMM+K+LMP++ F DAADALAIA+CH++H S +
Sbjct: 124 EKKQIHMMVKVLMPKATFDTDDAADALAIAICHSHHRQSAQSRA 167
>gi|32473246|ref|NP_866240.1| crossover junction endodeoxyribonuclease ruvC [Rhodopirellula
baltica SH 1]
gi|44888406|sp|Q7US71|RUVC_RHOBA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|32397925|emb|CAD73926.1| crossover junction endodeoxyribonuclease ruvC [Rhodopirellula
baltica SH 1]
Length = 178
Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 56/163 (34%), Positives = 88/163 (53%), Gaps = 2/163 (1%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
I+GIDPGL TG+ ++ G LC +G I S +L RL +++ GL++V +
Sbjct: 16 ILGIDPGLNTTGYAVISREGPRLCLREAGVIKSRRSDTLPERLREIHVGLSEVFAVHAVD 75
Query: 67 EAAVEQVFVNKD-AVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
A+EQ+F + D + +G AR + L+ A A +PV Y P +KK + G G K Q
Sbjct: 76 LMALEQLFSHYDRPRTAILMGHARGVICLAAASAGVPVEHYEPTRVKKVMTGNGRAPKSQ 135
Query: 126 IHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
I + +KM + S + D ADA+AI++C Y AN+ + +
Sbjct: 136 IQLAVKMQLNLQSVPEPADVADAMAISLCGHYLANNPIDQALA 178
>gi|198282209|ref|YP_002218530.1| Holliday junction resolvase [Acidithiobacillus ferrooxidans ATCC
53993]
gi|198246730|gb|ACH82323.1| crossover junction endodeoxyribonuclease RuvC [Acidithiobacillus
ferrooxidans ATCC 53993]
Length = 185
Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats.
Identities = 68/162 (41%), Positives = 98/162 (60%), Gaps = 2/162 (1%)
Query: 2 RKSIRIIGIDPGLRRTGWGIVDVAG-DNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
+ ++RIIGIDPG RTG+GI++ L V+ G + Q R+ +Y L +I
Sbjct: 17 QAAVRIIGIDPGSLRTGYGIIESDAAGELRHVAHGCLNVS-GQPFLERIGAIYRELKQII 75
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
+ PEEAA+EQVF+ ++A + LKLGQAR A+++ A +PV EY IKKA +G GH
Sbjct: 76 GTYHPEEAAIEQVFMARNADSALKLGQARGAALVALLEAGLPVEEYTALQIKKAAVGGGH 135
Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGY 162
K+Q+ M++ L+ S DAADALA A+CHA+H +
Sbjct: 136 AAKEQVQSMVRWLLKLSENPQADAADALACAICHAHHGRTRQ 177
>gi|329888420|ref|ZP_08267018.1| crossover junction endodeoxyribonuclease RuvC [Brevundimonas
diminuta ATCC 11568]
gi|328846976|gb|EGF96538.1| crossover junction endodeoxyribonuclease RuvC [Brevundimonas
diminuta ATCC 11568]
Length = 170
Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats.
Identities = 61/134 (45%), Positives = 89/134 (66%)
Query: 2 RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
++ RI+G+DPGLRRTGWG+++ G L +++ G + + + RL L E + +V
Sbjct: 3 NETTRILGLDPGLRRTGWGVIESEGSRLRWIAHGVVAPDDKAPFSERLLHLLEQVGEVCA 62
Query: 62 NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
+ +EAA+E+VFVN + +TLKLG ARA +L+PA A + V+EYAP IKKAV+G G
Sbjct: 63 AYDCDEAAIEEVFVNVNPASTLKLGHARAAVMLAPARAGLSVAEYAPTLIKKAVVGAGQA 122
Query: 122 DKKQIHMMLKMLMP 135
DK QI M+K L+P
Sbjct: 123 DKSQIAFMIKRLLP 136
>gi|94676931|ref|YP_588763.1| crossover junction endodeoxyribonuclease RuvC [Baumannia
cicadellinicola str. Hc (Homalodisca coagulata)]
gi|123081487|sp|Q1LTF1|RUVC_BAUCH RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|94220081|gb|ABF14240.1| crossover junction endodeoxyribonuclease RuvC [Baumannia
cicadellinicola str. Hc (Homalodisca coagulata)]
Length = 173
Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats.
Identities = 48/136 (35%), Positives = 79/136 (58%), Gaps = 1/136 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
++GIDPG R TG+G++ G L +++SG I + RL ++Y + VI ++P
Sbjct: 3 IVLGIDPGSRITGYGVICKQGKILSYLASGCIRT-KTNDFPNRLKRIYIDVNQVITQFKP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
A+EQ+F+ K+ + LKL QAR++AI+ IPV EYA +KK ++G+G DK Q
Sbjct: 62 LVFAIEQLFIAKNMNSALKLSQARSVAIVVAMNNNIPVFEYAARQVKKTLVGIGSADKHQ 121
Query: 126 IHMMLKMLMPESFFKG 141
+ M++ ++ S
Sbjct: 122 VKHMVRTILNLSNNPQ 137
>gi|165976580|ref|YP_001652173.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae
serovar 3 str. JL03]
gi|165876681|gb|ABY69729.1| crossover junction endodeoxyribonuclease [Actinobacillus
pleuropneumoniae serovar 3 str. JL03]
Length = 200
Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats.
Identities = 65/160 (40%), Positives = 100/160 (62%), Gaps = 2/160 (1%)
Query: 1 MRKSI-RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDV 59
+ +++ I+GIDPG R TG+G++ G +L ++ SG I + V L RL ++Y G+T++
Sbjct: 5 IGQTMPIILGIDPGSRVTGYGVIRQTGRHLEYLGSGAIRTSV-DDLPTRLKRIYAGVTEI 63
Query: 60 IKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVG 119
I + P+ A+EQVF+ K+A + LKLGQAR AI++ +PV EYA +K+ V G+G
Sbjct: 64 ITQFHPDMFAIEQVFMAKNADSALKLGQARGTAIVAAVNHDLPVFEYAARLVKQTVTGIG 123
Query: 120 HGDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHAN 159
DK Q+ M+ ++ S DAADALAIA+ HA+
Sbjct: 124 SADKIQVQDMVTRMLQLSSKPQADAADALAIAITHAHSIQ 163
>gi|289209178|ref|YP_003461244.1| crossover junction endodeoxyribonuclease RuvC [Thioalkalivibrio sp.
K90mix]
gi|288944809|gb|ADC72508.1| crossover junction endodeoxyribonuclease RuvC [Thioalkalivibrio sp.
K90mix]
Length = 171
Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats.
Identities = 64/164 (39%), Positives = 97/164 (59%), Gaps = 2/164 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPG R TG+ +++ A G I + RL +++ G+ +VI +
Sbjct: 1 MRILGIDPGSRITGFAVIEYAKGQGRSRGHGVIRPRSKG-FPERLGEIFAGVVEVIGELK 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ A+E VFV ++A + +KLG AR AI + A +PV EYAP IK AV+GVG DK+
Sbjct: 60 PDVLAIETVFVARNAQSAIKLGHARGAAICAATQAGLPVHEYAPRAIKMAVVGVGSADKE 119
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
Q+ M++ L+ + DAADALA+A+CHA+ A ++A
Sbjct: 120 QVQHMMQQLLRLTEPASSDAADALAVALCHAHTAQ-HQARLAGA 162
>gi|322515241|ref|ZP_08068239.1| crossover junction endoribonuclease subunit C [Actinobacillus ureae
ATCC 25976]
gi|322118746|gb|EFX90952.1| crossover junction endoribonuclease subunit C [Actinobacillus ureae
ATCC 25976]
Length = 192
Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats.
Identities = 65/154 (42%), Positives = 97/154 (62%), Gaps = 1/154 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G +L ++ SG I + V L RL ++Y G+T++I ++P
Sbjct: 3 IILGIDPGSRVTGYGVIHQTGRHLEYLGSGAIRTSV-DDLPTRLKRIYAGVTEIITQFQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQVF+ K+A + LKLGQAR AI++ +PV EYA +K+ V G+G DK Q
Sbjct: 62 DMFAIEQVFMAKNADSALKLGQARGTAIVAAVNHDLPVFEYAARLVKQTVTGIGSADKIQ 121
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHAN 159
+ M+ ++ S DAADALAIA+ HA+
Sbjct: 122 VQDMVTRMLQLSSKPQADAADALAIAITHAHSIQ 155
>gi|307545150|ref|YP_003897629.1| crossover junction endodeoxyribonuclease RuvC [Halomonas elongata
DSM 2581]
gi|307217174|emb|CBV42444.1| crossover junction endodeoxyribonuclease RuvC [Halomonas elongata
DSM 2581]
Length = 180
Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats.
Identities = 70/154 (45%), Positives = 97/154 (62%), Gaps = 1/154 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ I+GIDPG R TG+G++DV +V+SG I + LA RL Q+Y G++++I
Sbjct: 1 MLILGIDPGSRITGYGVLDVTTPTPRYVASGCIRTR-GDDLAQRLAQVYAGISELIGMHG 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P E A+EQVF+ K+A + LKLGQAR AI+ A +PVSEY P IK+AV G G DK+
Sbjct: 60 PGEFAIEQVFMAKNADSALKLGQARGTAIVCAANHGLPVSEYGPRQIKQAVTGGGGADKR 119
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHA 158
Q+ M+ ++ DAADALAIA+ HA+
Sbjct: 120 QVQHMVTAVLGLDGSPQADAADALAIALTHAHAR 153
>gi|153003860|ref|YP_001378185.1| crossover junction endodeoxyribonuclease RuvC [Anaeromyxobacter sp.
Fw109-5]
gi|171769467|sp|A7H905|RUVC_ANADF RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|152027433|gb|ABS25201.1| crossover junction endodeoxyribonuclease RuvC [Anaeromyxobacter sp.
Fw109-5]
Length = 206
Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats.
Identities = 62/165 (37%), Positives = 90/165 (54%), Gaps = 1/165 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ +GIDPG RR G+G+V G L V+SG + + +A RL ++ +GL +VI+
Sbjct: 1 MIALGIDPGSRRCGYGVVAREGTRLVVVASGVLAPRAERPVAERLARILDGLAEVIRRAG 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P E ++EQVF + L LGQAR +A+ + A A +PV EYAP+ +K A G G K
Sbjct: 61 PAECSIEQVFSGASVRSALVLGQARGVALAAAAQAGLPVFEYAPSEVKLAFTGSGRATKD 120
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQD 169
Q+ ML+ + D ADALA+AVCH A ++
Sbjct: 121 QMIRTAHMLLG-ATPGLSDEADALALAVCHLARRAGRLAVPAVRN 164
>gi|220916122|ref|YP_002491426.1| crossover junction endodeoxyribonuclease RuvC [Anaeromyxobacter
dehalogenans 2CP-1]
gi|254767455|sp|B8JF03|RUVC_ANAD2 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|219953976|gb|ACL64360.1| crossover junction endodeoxyribonuclease RuvC [Anaeromyxobacter
dehalogenans 2CP-1]
Length = 185
Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats.
Identities = 63/154 (40%), Positives = 86/154 (55%), Gaps = 2/154 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ ++GIDPG RR G+G+V G L V SG + +A RL ++ +GL +I R
Sbjct: 1 MIVLGIDPGSRRCGYGVVAREGARLTVVESGVL-VPGDLPMAQRLGRILDGLDALIARAR 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P EA+VE VF + L LGQAR +A+ + A A +PV EYAP+ +K A G G K
Sbjct: 60 PLEASVESVFSGASPRSALVLGQARGVALAAAARAGLPVFEYAPSEVKLAFTGNGRAGKD 119
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHA 158
Q+ +ML+ + D ADALAIAVCH
Sbjct: 120 QMLRTARMLLG-AAPGLSDEADALAIAVCHLARR 152
>gi|83950118|ref|ZP_00958851.1| Holliday junction resolvase [Roseovarius nubinhibens ISM]
gi|83838017|gb|EAP77313.1| Holliday junction resolvase [Roseovarius nubinhibens ISM]
Length = 167
Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats.
Identities = 86/165 (52%), Positives = 112/165 (67%), Gaps = 2/165 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+R++GIDPGLR GWG++DV+G L V++G LA RL L+ LT+++ +
Sbjct: 1 MRVLGIDPGLRNLGWGVIDVSGSRLSHVANGVCH-STGDDLAQRLLSLHIQLTEIVARFA 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ AA+EQ FVNKD VATLKLGQAR IA+L PA A I V EYAPN +KK V+GVGH DK
Sbjct: 60 PDTAAIEQTFVNKDGVATLKLGQARGIALLVPAQAGISVGEYAPNRVKKTVVGVGHADKG 119
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGY-YKIASQ 168
QI M+KM +P + DAADALAIA+CHA++ G + A +
Sbjct: 120 QIAHMVKMQLPGANPASPDAADALAIAICHAHYTRGGQELREAGR 164
>gi|294085859|ref|YP_003552619.1| Holliday junction resolvase [Candidatus Puniceispirillum marinum
IMCC1322]
gi|292665434|gb|ADE40535.1| Holliday junction resolvase [Candidatus Puniceispirillum marinum
IMCC1322]
Length = 200
Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats.
Identities = 52/134 (38%), Positives = 81/134 (60%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+R++GIDPGLR TGWG++DV L V++G I ++ A RL ++ + L+ +I +
Sbjct: 1 MRVLGIDPGLRATGWGVIDVTAGRLIHVANGVIKPNHKEPDAQRLGRIADDLSAIIAAHQ 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P AA+E++FV K A + LKLG AR + I+ A + V E A +KK++ G G DK+
Sbjct: 61 PTYAAIEEIFVAKSAKSALKLGMARGVGIMICGQAGLEVHELAARLVKKSITGTGTADKR 120
Query: 125 QIHMMLKMLMPESF 138
QI M+ L+ +
Sbjct: 121 QIQDMVSRLLGVTP 134
>gi|121535578|ref|ZP_01667385.1| crossover junction endodeoxyribonuclease RuvC [Thermosinus
carboxydivorans Nor1]
gi|121305818|gb|EAX46753.1| crossover junction endodeoxyribonuclease RuvC [Thermosinus
carboxydivorans Nor1]
Length = 165
Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats.
Identities = 46/138 (33%), Positives = 74/138 (53%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ +GIDPG G+G V++ G L V G + + + S RL +++ L +IK R
Sbjct: 1 MLALGIDPGTAICGYGFVELRGSTLHAVDWGAVETSPKLSSTERLKIIFQDLDSLIKRQR 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ VEQ+F NK+ + +GQAR + +L+ AL I V E P +K++V+G G K+
Sbjct: 61 PDIIGVEQLFFNKNVTTAMTVGQARGVVLLAAALNNIKVLECTPLQVKQSVVGYGRATKE 120
Query: 125 QIHMMLKMLMPESFFKGK 142
Q+ M + L+ S
Sbjct: 121 QVMYMTQRLLNLSEKPHP 138
>gi|317057208|ref|YP_004105675.1| crossover junction endodeoxyribonuclease RuvC [Ruminococcus albus
7]
gi|315449477|gb|ADU23041.1| crossover junction endodeoxyribonuclease RuvC [Ruminococcus albus
7]
Length = 169
Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats.
Identities = 42/135 (31%), Positives = 74/135 (54%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPG G+G V+ + +GTI + RL +Y + +I +R
Sbjct: 1 MRIMGIDPGYGIVGYGFVEYDRGRFTPIKAGTIKTPSDMDFMKRLRVIYLDMQKLIGYYR 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+E AVE++F N + + + QAR + +L + +PV EY P +K +++G G+ +KK
Sbjct: 61 PDEVAVEKLFFNTNITTGIDVAQARGVTLLPAVMNELPVYEYTPLQVKSSIVGYGYAEKK 120
Query: 125 QIHMMLKMLMPESFF 139
Q+ M++ ++ S
Sbjct: 121 QVQEMVRSMLHLSEI 135
>gi|307257207|ref|ZP_07538979.1| Crossover junction endodeoxyribonuclease ruvC [Actinobacillus
pleuropneumoniae serovar 10 str. D13039]
gi|306864369|gb|EFM96280.1| Crossover junction endodeoxyribonuclease ruvC [Actinobacillus
pleuropneumoniae serovar 10 str. D13039]
Length = 192
Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats.
Identities = 65/154 (42%), Positives = 96/154 (62%), Gaps = 1/154 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G +L ++ SG I + V L RL ++Y G+T++I + P
Sbjct: 3 IILGIDPGSRVTGYGVIRQTGRHLEYLGSGAIRTSV-DDLPTRLKRIYAGVTEIITQFHP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQVF+ K+A + LKLGQAR AI++ +PV EYA +K+ V G+G DK Q
Sbjct: 62 DMFAIEQVFMAKNADSALKLGQARGTAIVAAVNHDLPVFEYAARLVKQTVTGIGSADKIQ 121
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHAN 159
+ M+ ++ S DAADALAIA+ HA+
Sbjct: 122 VQDMVTRMLQLSSKPQADAADALAIAITHAHSIQ 155
>gi|56460195|ref|YP_155476.1| Holliday junction resolvase [Idiomarina loihiensis L2TR]
gi|81600179|sp|Q5QYV0|RUVC_IDILO RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|56179205|gb|AAV81927.1| Holliday junction resolvasome, endonuclease subunit [Idiomarina
loihiensis L2TR]
Length = 178
Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats.
Identities = 64/167 (38%), Positives = 107/167 (64%), Gaps = 5/167 (2%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIV----SCVRQSLAFRLCQLYEGLTDVIK 61
I+GIDPG R TG+G+++ G L ++ SG I + +LA +L ++++ ++++I
Sbjct: 3 IILGIDPGSRLTGYGVIEQRGRQLNYLGSGCIKVIGTTKEPLTLAEKLRRIHDSVSELIT 62
Query: 62 NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
++P E A+EQVF+ K+ + LKLGQAR AI++ A A +PV+EY+ IK++V+G G
Sbjct: 63 QFKPNEFAIEQVFMAKNPDSALKLGQARGAAIVAAACAELPVAEYSARQIKQSVVGNGGA 122
Query: 122 DKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
+K Q+ M+ L+ +DAADALA+A+CHA+ + + K+A
Sbjct: 123 EKSQVQHMVMALLNLQRCPQEDAADALAVALCHAHSSQN-LIKMAGA 168
>gi|88607636|ref|YP_504655.1| crossover junction endodeoxyribonuclease RuvC [Anaplasma
phagocytophilum HZ]
gi|123763836|sp|Q2GLU6|RUVC_ANAPZ RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|88598699|gb|ABD44169.1| crossover junction endodeoxyribonuclease RuvC [Anaplasma
phagocytophilum HZ]
Length = 163
Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats.
Identities = 51/161 (31%), Positives = 89/161 (55%), Gaps = 3/161 (1%)
Query: 5 IRIIGIDPGLRRTGWGIV-DVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+ + G+DPGL TGW +V +L + +GTI + L +L ++ GL+ +I+ +
Sbjct: 1 MLVFGLDPGLNYTGWAVVLKEPSGSLSLLDTGTICTTSCSDLNDKLFCIFSGLSAIIQKF 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
A++E VFVN + A++ L ARA ++L+ + + + EY+P IKK V G G K
Sbjct: 61 SVSVASIENVFVNLNPKASMFLCYARAASLLACLSSNVKIFEYSPTKIKKCVFGNGRASK 120
Query: 124 KQIHMMLKMLMPESFFK--GKDAADALAIAVCHAYHANSGY 162
+QI +++ + S A+DA+A A+CH + + + Y
Sbjct: 121 EQIAFVVRSSLGLSEDASFSSHASDAIAAALCHIFSSGNRY 161
>gi|332664054|ref|YP_004446842.1| Crossover junction endodeoxyribonuclease ruvC [Haliscomenobacter
hydrossis DSM 1100]
gi|332332868|gb|AEE49969.1| Crossover junction endodeoxyribonuclease ruvC [Haliscomenobacter
hydrossis DSM 1100]
Length = 188
Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats.
Identities = 52/173 (30%), Positives = 87/173 (50%), Gaps = 18/173 (10%)
Query: 1 MRKSI---RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLT 57
M + I RI+G+DPG G+ I++V G L V G + + +L +++E +T
Sbjct: 1 MAEKIENYRILGVDPGTNILGYAILEVNGAELKPVDIGVVYLQKLEDHPQKLKRIFERIT 60
Query: 58 DVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIG 117
+I + P A+E F K+ + LKLG+A+ +A+ + + ++EY+P IK++V G
Sbjct: 61 SIISQYGPRYLAIEAPFFGKNPQSMLKLGRAQGVAMAAAITKGLEITEYSPKKIKQSVTG 120
Query: 118 VGHGDKKQIHMMLKMLMPESFFKGKDAADA--------LAIAVCHAYHANSGY 162
G+ K+Q+ ML+ + S D LA AVCH Y + S
Sbjct: 121 NGNAAKEQVAAMLQNTLKVSL-------DGQYLDATDALAAAVCHYYQSRSPL 166
>gi|254429277|ref|ZP_05042984.1| crossover junction endodeoxyribonuclease RuvC [Alcanivorax sp.
DG881]
gi|196195446|gb|EDX90405.1| crossover junction endodeoxyribonuclease RuvC [Alcanivorax sp.
DG881]
Length = 187
Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats.
Identities = 67/162 (41%), Positives = 103/162 (63%), Gaps = 2/162 (1%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
I+GIDPG RRTG+G+VDV G+ V+ GTI + + + RL +++ G+ V+K + P
Sbjct: 19 ILGIDPGSRRTGYGVVDVVGNRSRAVAFGTIAT-THKEIPPRLGEIFAGIDQVVKEFGPA 77
Query: 67 EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
E ++E+VF+ ++A + LKLGQAR AI + A +PV EY+ +K+AV+G G +K Q+
Sbjct: 78 EVSIEKVFMARNADSALKLGQARGAAIAAVMQAHVPVFEYSARQVKQAVVGKGGAEKNQV 137
Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
M+K L+ +DAADALAIA+CHA+ S ++
Sbjct: 138 GEMVKYLLKLEQRPQEDAADALAIALCHAHMRVS-LARMGGA 178
>gi|145634687|ref|ZP_01790396.1| Holliday junction resolvase [Haemophilus influenzae PittAA]
gi|145640258|ref|ZP_01795842.1| Holliday junction resolvase [Haemophilus influenzae R3021]
gi|260582588|ref|ZP_05850378.1| crossover junction endodeoxyribonuclease RuvC [Haemophilus
influenzae NT127]
gi|319896646|ref|YP_004134839.1| crossover junction endodeoxyribonuclease ruvc [Haemophilus
influenzae F3031]
gi|145268232|gb|EDK08227.1| Holliday junction resolvase [Haemophilus influenzae PittAA]
gi|145274844|gb|EDK14706.1| Holliday junction resolvase [Haemophilus influenzae 22.4-21]
gi|260094399|gb|EEW78297.1| crossover junction endodeoxyribonuclease RuvC [Haemophilus
influenzae NT127]
gi|317432148|emb|CBY80499.1| crossover junction endodeoxyribonuclease RuvC [Haemophilus
influenzae F3031]
Length = 190
Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats.
Identities = 65/158 (41%), Positives = 99/158 (62%), Gaps = 1/158 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G +L ++ SG I + V + L RL ++Y G+T++I ++P
Sbjct: 3 IILGIDPGSRVTGYGVIRQTGRHLEYLGSGAIRTQV-EDLPTRLKRIYAGVTEIITQFQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
A+EQVF+ K+A + LKLGQAR AI++ +PV EYA +K+ V+G+G DK Q
Sbjct: 62 NMFAIEQVFMAKNADSALKLGQARGTAIVAAVNHDLPVFEYAARLVKQTVVGIGSADKVQ 121
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYY 163
+ M+ ++ S DAADALAIA+ HA+ +
Sbjct: 122 VQEMVTRILKLSDKPQADAADALAIAITHAHSIQHSLH 159
>gi|332708977|ref|ZP_08428947.1| holliday junction endonuclease RuvC [Lyngbya majuscula 3L]
gi|332352166|gb|EGJ31736.1| holliday junction endonuclease RuvC [Lyngbya majuscula 3L]
Length = 185
Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats.
Identities = 49/188 (26%), Positives = 87/188 (46%), Gaps = 32/188 (17%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLC----------------------------FV 32
M K RI+GIDPGL G+G + + +
Sbjct: 1 MEK--RILGIDPGLATLGFGAISCQTTKISKSANTKGSLGVAKPSRQSLIQATLEPLQLL 58
Query: 33 SSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIA 92
G I + + RLC +YE L ++++ +P+ A+E++F + T+ + QAR +
Sbjct: 59 DFGIIQTPAKTDYGSRLCTIYEDLHTLLEHCQPDLVAIEKLFFYR-MSTTISVAQARGVV 117
Query: 93 ILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPE-SFFKGKDAADALAIA 151
+L A ++P+ E+ P IK+A+ G G+ DK ++ + + + K D ADALA+A
Sbjct: 118 VLVTAQHQVPMVEFTPGQIKQAMTGYGNADKYEVQQAVMRELNLDTIPKPDDLADALAVA 177
Query: 152 VCHAYHAN 159
+ +H +
Sbjct: 178 LTAWFHMS 185
>gi|153808536|ref|ZP_01961204.1| hypothetical protein BACCAC_02831 [Bacteroides caccae ATCC 43185]
gi|149128858|gb|EDM20075.1| hypothetical protein BACCAC_02831 [Bacteroides caccae ATCC 43185]
Length = 169
Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats.
Identities = 46/146 (31%), Positives = 75/146 (51%), Gaps = 3/146 (2%)
Query: 17 TGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVN 76
G+GI+ + G V+ G I + +L ++E + +I+++ P+E A+E F
Sbjct: 1 MGYGILRIKGTKPEMVAMGIIDLRKFANHYLKLRHIHERVLSIIESYLPDELAIEAPFFG 60
Query: 77 KDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLM-- 134
K+ + LKLG+A+ +A+ IP++EYAP IK A+ G G K+Q+ ML+ ++
Sbjct: 61 KNVQSMLKLGRAQGVAMAVALSRDIPITEYAPLKIKMAITGNGQASKEQVADMLQRMLHF 120
Query: 135 -PESFFKGKDAADALAIAVCHAYHAN 159
E DA D LA A CH
Sbjct: 121 SKEDMPTFMDATDGLAAAYCHFLQMG 146
>gi|323142287|ref|ZP_08077119.1| crossover junction endodeoxyribonuclease RuvC
[Phascolarctobacterium sp. YIT 12067]
gi|322413171|gb|EFY04058.1| crossover junction endodeoxyribonuclease RuvC
[Phascolarctobacterium sp. YIT 12067]
Length = 183
Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats.
Identities = 42/138 (30%), Positives = 82/138 (59%), Gaps = 1/138 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ ++GIDPG G+G+VD+ G+ L V G++++ RL ++Y+ ++D+I +++
Sbjct: 20 MLVLGIDPGTAICGYGLVDMTGNRLRPVFYGSVLTYKDMLPELRLKKIYDDISDIIDHFK 79
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ ++E++F N++ + +GQAR + +L+ A +PV E+ P IK +V+G G K+
Sbjct: 80 PDLLSIEKLFFNRNVTTAIPVGQARGVVLLAAANKGLPVMEFTPMQIKLSVVGTGSATKE 139
Query: 125 QIHMMLKMLMPE-SFFKG 141
Q+ M+ L+ K
Sbjct: 140 QVIYMVMHLLNIREKIKP 157
>gi|92113969|ref|YP_573897.1| crossover junction endodeoxyribonuclease RuvC [Chromohalobacter
salexigens DSM 3043]
gi|123084055|sp|Q1QWG0|RUVC_CHRSD RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|91797059|gb|ABE59198.1| crossover junction endodeoxyribonuclease RuvC [Chromohalobacter
salexigens DSM 3043]
Length = 186
Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats.
Identities = 58/134 (43%), Positives = 81/134 (60%), Gaps = 1/134 (0%)
Query: 8 IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEE 67
+GIDPG R TG+G+VDVA +V+SG I LA +L Q+Y G+ ++I RP E
Sbjct: 11 LGIDPGSRITGYGVVDVATPTPRYVASGCIR-IKSDQLAQKLAQVYAGIGELIGLHRPHE 69
Query: 68 AAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIH 127
A+EQVF++K+A + LKLGQAR AI+ A + V EYAP IK+AV G G K+Q+
Sbjct: 70 IAIEQVFMSKNADSALKLGQARGTAIVCAANHGLEVFEYAPTQIKQAVTGTGAATKEQVQ 129
Query: 128 MMLKMLMPESFFKG 141
M+ ++
Sbjct: 130 HMVTAILGLDGVPQ 143
>gi|167855799|ref|ZP_02478552.1| crossover junction endodeoxyribonuclease RuvC [Haemophilus parasuis
29755]
gi|219871141|ref|YP_002475516.1| Holliday junction resolvase [Haemophilus parasuis SH0165]
gi|254767475|sp|B8F5G6|RUVC_HAEPS RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|167853078|gb|EDS24339.1| crossover junction endodeoxyribonuclease RuvC [Haemophilus parasuis
29755]
gi|219691345|gb|ACL32568.1| holliday junction resolvase [Haemophilus parasuis SH0165]
Length = 192
Score = 138 bits (347), Expect = 3e-31, Method: Composition-based stats.
Identities = 65/154 (42%), Positives = 99/154 (64%), Gaps = 1/154 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G +L ++ SG I + V + L RL ++Y G+T++I ++P
Sbjct: 3 IILGIDPGSRVTGYGVIRQTGRHLEYLGSGAIRTSV-EDLPTRLKRIYAGVTEIITQFQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQVF+ K+A + LKLGQAR AI++ +PV EYA +K+ V+G+G DK Q
Sbjct: 62 DMFAIEQVFMAKNADSALKLGQARGTAIVAAVNHDLPVFEYAARLVKQTVVGIGSADKVQ 121
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHAN 159
+ M+ ++ S DAADALAIA+ HA+
Sbjct: 122 VQDMVTRILQLSAKPQADAADALAIAITHAHSIQ 155
>gi|126668400|ref|ZP_01739357.1| Holliday junction resolvase [Marinobacter sp. ELB17]
gi|126627109|gb|EAZ97749.1| Holliday junction resolvase [Marinobacter sp. ELB17]
Length = 175
Score = 138 bits (347), Expect = 3e-31, Method: Composition-based stats.
Identities = 67/163 (41%), Positives = 105/163 (64%), Gaps = 2/163 (1%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+G+DPG R TG+GI+ V G + ++ SG I + +A RL +++ L +I +RP
Sbjct: 3 IILGVDPGSRITGYGIIRVEGRHTEYIDSGCIRV-GEKPMAERLRVIFQSLVTLIAEFRP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
EE A+EQVF+ ++ + LKLGQAR AI++ A + + V EY+ +K+AV+G G +K Q
Sbjct: 62 EEFAIEQVFMARNPDSALKLGQARGAAIVAAATSGLEVHEYSARQVKQAVVGSGGAEKAQ 121
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
+ M+++L+ S +DAADALAIA+CHA+ S ++A Q
Sbjct: 122 VQHMVQVLLSLSRKPQEDAADALAIALCHAHMNQS-LLRVAGQ 163
>gi|32033874|ref|ZP_00134145.1| COG0817: Holliday junction resolvasome, endonuclease subunit
[Actinobacillus pleuropneumoniae serovar 1 str. 4074]
gi|126208623|ref|YP_001053848.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae L20]
gi|190150481|ref|YP_001969006.1| crossover junction endodeoxyribonuclease RuvC [Actinobacillus
pleuropneumoniae serovar 7 str. AP76]
gi|307261635|ref|ZP_07543303.1| Crossover junction endodeoxyribonuclease ruvC [Actinobacillus
pleuropneumoniae serovar 12 str. 1096]
gi|307263825|ref|ZP_07545430.1| Crossover junction endodeoxyribonuclease ruvC [Actinobacillus
pleuropneumoniae serovar 13 str. N273]
gi|166231574|sp|A3N1F7|RUVC_ACTP2 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|238692344|sp|B3GY41|RUVC_ACTP7 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|126097415|gb|ABN74243.1| crossover junction endodeoxyribonuclease RuvC [Actinobacillus
pleuropneumoniae serovar 5b str. L20]
gi|189915612|gb|ACE61864.1| crossover junction endodeoxyribonuclease RuvC [Actinobacillus
pleuropneumoniae serovar 7 str. AP76]
gi|306868758|gb|EFN00567.1| Crossover junction endodeoxyribonuclease ruvC [Actinobacillus
pleuropneumoniae serovar 12 str. 1096]
gi|306870814|gb|EFN02553.1| Crossover junction endodeoxyribonuclease ruvC [Actinobacillus
pleuropneumoniae serovar 13 str. N273]
Length = 192
Score = 138 bits (347), Expect = 3e-31, Method: Composition-based stats.
Identities = 65/154 (42%), Positives = 96/154 (62%), Gaps = 1/154 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G +L ++ SG I + V L RL ++Y G+T++I + P
Sbjct: 3 IILGIDPGSRVTGYGVIRQTGRHLEYLGSGAIRTSV-DDLPTRLKRIYAGVTEIITQFHP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQVF+ K+A + LKLGQAR AI++ +PV EYA +K+ V G+G DK Q
Sbjct: 62 DMFAIEQVFMAKNADSALKLGQARGTAIVAAVNHDLPVFEYAARLVKQTVTGIGSADKIQ 121
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHAN 159
+ M+ ++ S DAADALAIA+ HA+
Sbjct: 122 VQDMVTRMLQLSSKPQADAADALAIAITHAHSIQ 155
>gi|240949851|ref|ZP_04754177.1| Holliday junction resolvase [Actinobacillus minor NM305]
gi|257464831|ref|ZP_05629202.1| Holliday junction resolvase [Actinobacillus minor 202]
gi|240295705|gb|EER46407.1| Holliday junction resolvase [Actinobacillus minor NM305]
gi|257450491|gb|EEV24534.1| Holliday junction resolvase [Actinobacillus minor 202]
Length = 192
Score = 138 bits (347), Expect = 3e-31, Method: Composition-based stats.
Identities = 65/154 (42%), Positives = 98/154 (63%), Gaps = 1/154 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G +L ++ SG I + V L RL ++Y G+T++I ++P
Sbjct: 3 IILGIDPGSRITGYGVIRQTGKHLEYLGSGAIRTSV-DDLPTRLKRIYAGVTEIITQFQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQVF+ K+A + LKLGQAR AI++ +PV EYA +K+ V+G+G DK Q
Sbjct: 62 DMFAIEQVFMAKNADSALKLGQARGTAIVAAVNHDLPVFEYAARLVKQTVVGIGSADKVQ 121
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHAN 159
+ M+ ++ S DAADALAIA+ HA+
Sbjct: 122 VQDMVTRILQLSAKPQADAADALAIAITHAHSIQ 155
>gi|145628664|ref|ZP_01784464.1| Holliday junction resolvase [Haemophilus influenzae 22.1-21]
gi|148827466|ref|YP_001292219.1| Holliday junction resolvase [Haemophilus influenzae PittGG]
gi|166233196|sp|A5UGD0|RUVC_HAEIG RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|144979134|gb|EDJ88820.1| Holliday junction resolvase [Haemophilus influenzae 22.1-21]
gi|148718708|gb|ABQ99835.1| Holliday junction resolvase [Haemophilus influenzae PittGG]
Length = 190
Score = 138 bits (347), Expect = 3e-31, Method: Composition-based stats.
Identities = 65/158 (41%), Positives = 100/158 (63%), Gaps = 1/158 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G +L ++ SG I + V + L RL ++Y G+T++I ++P
Sbjct: 3 IILGIDPGSRVTGYGVIRQTGRHLEYLGSGAIRTQV-EDLPTRLKRIYAGVTEIITQFQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQVF+ K+A + LKLGQAR AI++ +PV EYA +K+ V+G+G DK Q
Sbjct: 62 DMFAIEQVFMAKNADSALKLGQARGTAIVAAVNHDLPVFEYAARLVKQTVVGIGSADKVQ 121
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYY 163
+ M+ ++ S DAADALAIA+ HA+ +
Sbjct: 122 VQEMVTRILKLSDKPQADAADALAIAITHAHSIQHSLH 159
>gi|145638773|ref|ZP_01794382.1| Holliday junction resolvase [Haemophilus influenzae PittII]
gi|229845015|ref|ZP_04465152.1| Holliday junction resolvase [Haemophilus influenzae 6P18H1]
gi|145272368|gb|EDK12276.1| Holliday junction resolvase [Haemophilus influenzae PittII]
gi|229812149|gb|EEP47841.1| Holliday junction resolvase [Haemophilus influenzae 6P18H1]
gi|309750263|gb|ADO80247.1| Holliday junction resolvasome, endodeoxyribonuclease subunit
[Haemophilus influenzae R2866]
Length = 190
Score = 138 bits (347), Expect = 3e-31, Method: Composition-based stats.
Identities = 65/158 (41%), Positives = 99/158 (62%), Gaps = 1/158 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G +L ++ SG I + V + L RL ++Y G+T++I ++P
Sbjct: 3 IILGIDPGSRVTGYGVIRQTGRHLEYLGSGAIRTQV-EDLPTRLKRIYAGVTEIITQFQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
A+EQVF+ K+A + LKLGQAR AI++ +PV EYA +K+ V+G+G DK Q
Sbjct: 62 SMFAIEQVFMAKNADSALKLGQARGTAIVAAVNHDLPVFEYAARLVKQTVVGIGSADKVQ 121
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYY 163
+ M+ ++ S DAADALAIA+ HA+ +
Sbjct: 122 VQEMVTRILKLSDKPQADAADALAIAITHAHSIQHSLH 159
>gi|315453063|ref|YP_004073333.1| crossover junction endodeoxyribonuclease [Helicobacter felis ATCC
49179]
gi|315132115|emb|CBY82743.1| crossover junction endodeoxyribonuclease (ruvC) [Helicobacter felis
ATCC 49179]
Length = 165
Score = 138 bits (347), Expect = 3e-31, Method: Composition-based stats.
Identities = 50/154 (32%), Positives = 79/154 (51%), Gaps = 5/154 (3%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
I+GIDPG R+ G+GIVDV + +G I L ++ ++ EG ++ +
Sbjct: 2 ILGIDPGSRKCGYGIVDVHS---KLIGAGFIH-IQNAPLQTQILEMVEGFNQILNAYPIT 57
Query: 67 EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
E A+E +F + + LKL Q R L + SEY P +K+A+ G G K+Q+
Sbjct: 58 EVAMEDIFYAHNPKSVLKLAQFRGALSLKILQSVGKFSEYTPLQVKRAISGHGKASKEQV 117
Query: 127 HMML-KMLMPESFFKGKDAADALAIAVCHAYHAN 159
M+ K+L ++ K D DALA+A+ HA +
Sbjct: 118 AFMVGKILGLKNAIKPLDITDALAVALTHAQQRH 151
>gi|71277765|ref|YP_268841.1| crossover junction endodeoxyribonuclease RuvC [Colwellia
psychrerythraea 34H]
gi|110287670|sp|Q483C6|RUVC_COLP3 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|71143505|gb|AAZ23978.1| crossover junction endodeoxyribonuclease RuvC [Colwellia
psychrerythraea 34H]
Length = 175
Score = 138 bits (347), Expect = 3e-31, Method: Composition-based stats.
Identities = 60/164 (36%), Positives = 96/164 (58%), Gaps = 2/164 (1%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIV-SCVRQSLAFRLCQLYEGLTDVIKNWR 64
I+GIDPG R TG+G++ ++ SG I + LA RL ++ G++++I ++
Sbjct: 3 IILGIDPGSRFTGYGVIKQEKQRFTYLGSGCIKAMSQGEDLASRLQTIFAGVSELIIQFK 62
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ A+EQVF+ + LKLGQAR AI++ + + ++EY+ IK+AV+G G DK
Sbjct: 63 PDMFAIEQVFMGVNPGGALKLGQARGAAIVAATNSGLTIAEYSARQIKQAVVGTGAADKN 122
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
Q+ M+K ++ DAADALA+A+CH + S +A Q
Sbjct: 123 QVQHMVKSILKLPGTPQADAADALAVALCHGHSHTSAAI-LAGQ 165
>gi|325001689|ref|ZP_08122801.1| Holliday junction resolvase [Pseudonocardia sp. P1]
Length = 159
Score = 138 bits (347), Expect = 3e-31, Method: Composition-based stats.
Identities = 55/156 (35%), Positives = 87/156 (55%), Gaps = 2/156 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R++G+DPGL R G G+V+ G ++ FV G + S +L RL + + + I
Sbjct: 1 MRVLGVDPGLTRCGIGVVESGEGRSVSFVDVGVVRSGTDLALERRLLTVADEVERWIARH 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
RP+ AVE+VF + + QA + L A A +PV+ + P+ +K AV G G K
Sbjct: 61 RPDVIAVERVFSQHNVRTVMGTAQASGVVALVAARAGLPVAFHTPSEVKAAVTGEGRAGK 120
Query: 124 KQIHMML-KMLMPESFFKGKDAADALAIAVCHAYHA 158
Q+ M+ K+L ++ K DAADALA+A+CH + +
Sbjct: 121 AQVTTMVTKVLGLDTPPKPADAADALALAICHCWRS 156
>gi|300934560|ref|ZP_07149816.1| Holliday junction resolvase [Corynebacterium resistens DSM 45100]
Length = 208
Score = 138 bits (347), Expect = 3e-31, Method: Composition-based stats.
Identities = 50/156 (32%), Positives = 81/156 (51%), Gaps = 2/156 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCF-VSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R++GIDPGL R G +V V+ G + + SL RL +L + + + +
Sbjct: 43 LRVMGIDPGLTRCGLSVVQAGRGRAVLPVAVGVVRTPASDSLTSRLLRLSNAVEEWMDEY 102
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
+P+ A+E+VF + + A + +L+ A + V Y P+ +KKA+ G G DK
Sbjct: 103 KPDVVALERVFERSNVSTVMNTAHASGVLMLAAAKRGLDVHMYTPSEVKKAITGNGRADK 162
Query: 124 KQIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHA 158
Q+ M+ ++ K DAADALA+AVCH + A
Sbjct: 163 PQMTNMVTRILGLGEPPKPADAADALALAVCHCWRA 198
>gi|126733601|ref|ZP_01749348.1| crossover junction endodeoxyribonuclease RuvC [Roseobacter sp.
CCS2]
gi|126716467|gb|EBA13331.1| crossover junction endodeoxyribonuclease RuvC [Roseobacter sp.
CCS2]
Length = 168
Score = 138 bits (347), Expect = 4e-31, Method: Composition-based stats.
Identities = 70/131 (53%), Positives = 91/131 (69%), Gaps = 1/131 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+R++GIDPGLR GWG+++V+G L V++G LA RL L++ LT V+ +
Sbjct: 1 MRVLGIDPGLRNMGWGVIEVSGSRLGHVANGVCR-SQGDDLAARLLSLHQQLTAVLTQHQ 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ AAVEQ FVNKD TLKLGQAR IA+L PA A + V EYAPN +KKAV+GVGH DK
Sbjct: 60 PQAAAVEQTFVNKDGAGTLKLGQARGIAMLVPAQAGLVVGEYAPNAVKKAVVGVGHADKA 119
Query: 125 QIHMMLKMLMP 135
QI M+K+ +P
Sbjct: 120 QIAHMVKVQLP 130
>gi|325579044|ref|ZP_08149000.1| crossover junction endodeoxyribonuclease RuvC [Haemophilus
parainfluenzae ATCC 33392]
gi|325159279|gb|EGC71413.1| crossover junction endodeoxyribonuclease RuvC [Haemophilus
parainfluenzae ATCC 33392]
Length = 190
Score = 138 bits (347), Expect = 4e-31, Method: Composition-based stats.
Identities = 66/162 (40%), Positives = 102/162 (62%), Gaps = 1/162 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G +L ++ SG I + V + L RL ++Y G+T++I ++P
Sbjct: 3 IILGIDPGSRVTGYGVIRQNGRHLEYLGSGAIRTQV-EDLPTRLKRIYAGVTEIITQFQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQVF+ K+A + LKLGQAR AI++ +PV EYA +K+ V+G+G DK Q
Sbjct: 62 DMFAIEQVFMAKNADSALKLGQARGTAIVAAVNHDLPVFEYAARLVKQTVVGIGSADKVQ 121
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
+ M+ ++ S DAADALAIA+ HA+ + + S
Sbjct: 122 VQDMVTRILKLSDKPQADAADALAIAITHAHTIQHSLHIVGS 163
>gi|295396080|ref|ZP_06806263.1| crossover junction endoribonuclease subunit C [Brevibacterium
mcbrellneri ATCC 49030]
gi|294971021|gb|EFG46913.1| crossover junction endoribonuclease subunit C [Brevibacterium
mcbrellneri ATCC 49030]
Length = 198
Score = 138 bits (347), Expect = 4e-31, Method: Composition-based stats.
Identities = 52/160 (32%), Positives = 84/160 (52%), Gaps = 2/160 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+RI+G+DPGL R G G++D V+ I + + S RL ++ + + N+
Sbjct: 1 MRILGVDPGLTRLGLGVIDAGRARQARMVAVDVIRTPSQDSSDVRLGRIADAFDTWLDNY 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
RP+ ++E++F D + QA + + A IPV+ + P+ +K AV G G DK
Sbjct: 61 RPDVVSIERIFARNDVSTIMGTAQASGLTMGLAARRGIPVAMHTPSEVKAAVTGNGRADK 120
Query: 124 KQIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHANSGY 162
KQ+ M+ ++ S K DAADALA+A+CH + S
Sbjct: 121 KQVTHMVTRILKLDSPPKPADAADALALAICHLWRGASSA 160
>gi|163840743|ref|YP_001625148.1| Holliday junction resolvase [Renibacterium salmoninarum ATCC 33209]
gi|189046075|sp|A9WSE6|RUVC_RENSM RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|162954219|gb|ABY23734.1| crossover junction endodeoxyribonuclease [Renibacterium
salmoninarum ATCC 33209]
Length = 193
Score = 138 bits (347), Expect = 4e-31, Method: Composition-based stats.
Identities = 55/166 (33%), Positives = 85/166 (51%), Gaps = 2/166 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R+ G+DPGL R G+G+VDVA + V+ G I S L+ RL + E + +
Sbjct: 1 MRVFGVDPGLTRCGFGVVDVAANRSASLVAVGVIGSSSELPLSQRLLVISESIDQWLDTH 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
P+ AVE+VF + + + QA I I + A I V+ + P+ +K AV G G DK
Sbjct: 61 SPDVLAVERVFSQTNLSTVMGVAQASGIVIAAAAKRGIAVALHTPSEVKAAVTGNGRADK 120
Query: 124 KQIHMMLKMLMPES-FFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
+ M+ ++ DAADALA+A+ HA+ + G A +
Sbjct: 121 IAVTAMVTRILKLKVAPTPADAADALALAITHAWRSGPGSTAAAGE 166
>gi|90022180|ref|YP_528007.1| Holliday junction resolvase [Saccharophagus degradans 2-40]
gi|122996072|sp|Q21HN4|RUVC_SACD2 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|89951780|gb|ABD81795.1| crossover junction endodeoxyribonuclease RuvC [Saccharophagus
degradans 2-40]
Length = 173
Score = 138 bits (347), Expect = 4e-31, Method: Composition-based stats.
Identities = 60/163 (36%), Positives = 97/163 (59%), Gaps = 1/163 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
++G+DPG +TG+G+V+ +++SG I L RL ++E L ++I+ ++P
Sbjct: 3 IVLGVDPGSLKTGFGLVNHVSGRCEYIASGVIRMKSSDELPERLKTIFESLVEIIECYQP 62
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
E A+E+VF+ K A + LKLGQAR AI++ +PV EY +K++V+G G DK Q
Sbjct: 63 SEFAIEKVFMAKSAGSALKLGQARGAAIVAAVTNGLPVGEYEARKVKQSVVGSGAADKSQ 122
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
+ M++ L+ + +DAADALAIA+CH S ++A
Sbjct: 123 VQHMVRTLLHLTATPQEDAADALAIALCHINTQAS-LIRLAGS 164
>gi|189218505|ref|YP_001939146.1| Holliday junction resolvasome, endonuclease subunit
[Methylacidiphilum infernorum V4]
gi|189185363|gb|ACD82548.1| Holliday junction resolvasome, endonuclease subunit
[Methylacidiphilum infernorum V4]
Length = 169
Score = 137 bits (346), Expect = 4e-31, Method: Composition-based stats.
Identities = 48/141 (34%), Positives = 78/141 (55%), Gaps = 1/141 (0%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M K +RI+GIDP LR+TG+GI++ G + + G IV+ A +L +YE L +I
Sbjct: 2 MNKPLRILGIDPALRKTGYGIIESNGTSTRLIDFGVIVTE-HADQARKLRSIYERLLSII 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
+ + PE A+E + ++ + +G AR +A+L +L +PV EY+P IK A G G
Sbjct: 61 QEYSPEHVAMESIIFVQNRKTAIDMGAARGVALLLFSLKELPVFEYSPRKIKMAATGKGS 120
Query: 121 GDKKQIHMMLKMLMPESFFKG 141
K+Q+ M++ L+
Sbjct: 121 ARKEQVSFMIRALLAMDSLPP 141
>gi|68248921|ref|YP_248033.1| Holliday junction resolvase [Haemophilus influenzae 86-028NP]
gi|81336668|sp|Q4QNM4|RUVC_HAEI8 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|68057120|gb|AAX87373.1| crossover junction endodeoxyribonuclease RuvC [Haemophilus
influenzae 86-028NP]
Length = 190
Score = 137 bits (346), Expect = 4e-31, Method: Composition-based stats.
Identities = 65/158 (41%), Positives = 99/158 (62%), Gaps = 1/158 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G +L ++ SG I + V + L RL ++Y G+T++I ++P
Sbjct: 3 IILGIDPGSRVTGYGVIRQTGRHLEYLGSGAIRTQV-EDLPTRLKRIYAGVTEIITQFQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
A+EQVF+ K+A + LKLGQAR AI++ +PV EYA +K+ V+G+G DK Q
Sbjct: 62 NMFAIEQVFMAKNADSALKLGQARGTAIVAAVNNDLPVFEYAARLVKQTVVGIGSADKVQ 121
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYY 163
+ M+ ++ S DAADALAIA+ HA+ +
Sbjct: 122 VQEMVTRILKLSDKPQADAADALAIAITHAHSIQHSLH 159
>gi|257457989|ref|ZP_05623148.1| crossover junction endodeoxyribonuclease RuvC [Treponema vincentii
ATCC 35580]
gi|257444702|gb|EEV19786.1| crossover junction endodeoxyribonuclease RuvC [Treponema vincentii
ATCC 35580]
Length = 164
Score = 137 bits (346), Expect = 4e-31, Method: Composition-based stats.
Identities = 47/137 (34%), Positives = 81/137 (59%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
I+GIDPGL TG+GI+ V G + + G I + Q RL +++ LT++I+ + P
Sbjct: 12 IMGIDPGLASTGYGIIAVTGSRMRCIDYGVIQTEAGQIQGNRLLIVFDRLTELIRAYHPI 71
Query: 67 EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
A +E ++ K+ + L + +AR + +L+ A A +PV +YAPN IKKAV G+ +K+Q+
Sbjct: 72 AAGIETLYFAKNVTSALSVSEARGVTLLALAQAGVPVFQYAPNAIKKAVTGIAQAEKQQV 131
Query: 127 HMMLKMLMPESFFKGKD 143
+ +++L+ D
Sbjct: 132 QLTVQLLLGLKTIPKPD 148
>gi|301155727|emb|CBW15195.1| component of RuvABC resolvasome, endonuclease [Haemophilus
parainfluenzae T3T1]
Length = 190
Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats.
Identities = 66/162 (40%), Positives = 101/162 (62%), Gaps = 1/162 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G +L ++ SG I + V + L RL ++Y G+T++I ++P
Sbjct: 3 IILGIDPGSRVTGYGVIRQNGRHLEYLGSGAIRTQV-EDLPTRLKRIYAGVTEIITQFQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQVF+ K+A + LKLGQAR AI++ +PV EYA +K+ V+G+G DK Q
Sbjct: 62 DMFAIEQVFMAKNADSALKLGQARGTAIVAAVNHDLPVFEYAARLVKQTVVGIGSADKVQ 121
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
+ M+ ++ S DAADALAIA+ HA+ + S
Sbjct: 122 VQDMVTRILKLSDKPQADAADALAIAITHAHTIQHSLHIAGS 163
>gi|319775818|ref|YP_004138306.1| crossover junction endodeoxyribonuclease RuvC [Haemophilus
influenzae F3047]
gi|329123662|ref|ZP_08252222.1| crossover junction endodeoxyribonuclease RuvC [Haemophilus
aegyptius ATCC 11116]
gi|317450409|emb|CBY86625.1| crossover junction endodeoxyribonuclease RuvC [Haemophilus
influenzae F3047]
gi|327469861|gb|EGF15326.1| crossover junction endodeoxyribonuclease RuvC [Haemophilus
aegyptius ATCC 11116]
Length = 190
Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats.
Identities = 65/158 (41%), Positives = 99/158 (62%), Gaps = 1/158 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G +L ++ SG I + V + L RL ++Y G+T++I ++P
Sbjct: 3 IILGIDPGSRVTGYGVIRQTGRHLEYLGSGAIRTQV-EDLPTRLKRIYAGVTEIITQFQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
A+EQVF+ K+A + LKLGQAR AI++ +PV EYA +K+ V+G+G DK Q
Sbjct: 62 NMFAIEQVFMAKNADSALKLGQARGTAIVAAVNHDLPVFEYAARLVKQTVVGIGSADKVQ 121
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYY 163
+ M+ ++ S DAADALAIA+ HA+ +
Sbjct: 122 VQEMVTRILKLSDKPQADAADALAIAITHAHSIQHSLH 159
>gi|83592423|ref|YP_426175.1| Holliday junction resolvase [Rhodospirillum rubrum ATCC 11170]
gi|123739582|sp|Q2RVF7|RUVC_RHORT RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|83575337|gb|ABC21888.1| Crossover junction endodeoxyribonuclease RuvC [Rhodospirillum
rubrum ATCC 11170]
Length = 169
Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats.
Identities = 77/159 (48%), Positives = 112/159 (70%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+R++G+DPGLR TGWG+++V G+ + V+ G + S R SLA RL QL+ G+ V+K +
Sbjct: 1 MRLLGLDPGLRITGWGVIEVTGNRIGHVADGVVRSDDRLSLAARLAQLHGGIVAVLKAYE 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P EAAVE+ FVN++ +TLKLGQAR +L+PALA + V+EY P+ +KKAV+G G K
Sbjct: 61 PVEAAVEETFVNRNPASTLKLGQARGAVMLAPALAGLVVAEYQPSVVKKAVVGTGGAAKD 120
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYY 163
Q+ MM++ L+P + + DAADALAIA+CHA++
Sbjct: 121 QVGMMIRTLLPGATLETADAADALAIAICHAHYRAGALS 159
>gi|320160778|ref|YP_004174002.1| crossover junction endodeoxyribonuclease RuvC [Anaerolinea
thermophila UNI-1]
gi|319994631|dbj|BAJ63402.1| crossover junction endodeoxyribonuclease RuvC [Anaerolinea
thermophila UNI-1]
Length = 167
Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats.
Identities = 56/155 (36%), Positives = 88/155 (56%), Gaps = 2/155 (1%)
Query: 5 IRIIGIDPGLRRTGWGIV-DVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+ ++GIDPG TG+G+V + +L V G I + RL LY L ++I
Sbjct: 1 MLVLGIDPGTATTGYGLVRESQDGSLHLVGYGVIQTPAGLEEEKRLLLLYHKLNELILLH 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
P VE++F ++ + +GQAR + +L+ A IPV EY P +K++V G G+ DK
Sbjct: 61 APNAGVVEKLFFRRNVTTAIGVGQARGVVLLALAQHGIPVWEYTPMEVKQSVSGYGNADK 120
Query: 124 KQIHMMLKMLMPESF-FKGKDAADALAIAVCHAYH 157
+Q+ +M++ L+ K DAADALA+A+CH +H
Sbjct: 121 RQVQLMVQTLLNLEEYPKPDDAADALAVAICHLHH 155
>gi|88800178|ref|ZP_01115746.1| Holliday junction resolvase [Reinekea sp. MED297]
gi|88777024|gb|EAR08231.1| Holliday junction resolvase [Reinekea sp. MED297]
Length = 171
Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats.
Identities = 70/162 (43%), Positives = 104/162 (64%), Gaps = 1/162 (0%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
I+GIDPG R+TG+G+++ G + +VSSG I +LA RL +Y ++++I+ + P
Sbjct: 2 ILGIDPGSRKTGFGLINQHGTRMEYVSSGVIRVHKEPTLADRLDLIYTSVSEIIEQFSPA 61
Query: 67 EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
A+EQVF+ + + LKLGQAR AI++ ARI V EYA +K++V G G+ DK QI
Sbjct: 62 CMAIEQVFMGRGPDSALKLGQARGAAIIAGTQARIDVYEYAARKVKQSVAGNGNADKDQI 121
Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
M+K ++ +DAADALAIA+CHAY+ ++G IA
Sbjct: 122 GYMVKSILKLPGVPQEDAADALAIALCHAYN-HTGLVNIAGA 162
>gi|145632565|ref|ZP_01788299.1| Holliday junction resolvase [Haemophilus influenzae 3655]
gi|144986760|gb|EDJ93312.1| Holliday junction resolvase [Haemophilus influenzae 3655]
Length = 190
Score = 137 bits (345), Expect = 5e-31, Method: Composition-based stats.
Identities = 65/158 (41%), Positives = 100/158 (63%), Gaps = 1/158 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G +L ++ SG I + V + L RL ++Y G+T++I ++P
Sbjct: 3 IILGIDPGSRVTGYGVIRQTGRHLEYLGSGAIRTQV-EDLPTRLKRIYAGVTEIITQFQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQVF+ K+A + LKLGQAR AI++ +PV EYA +K+ V+G+G DK Q
Sbjct: 62 DMFAIEQVFMAKNADSALKLGQARGTAIVAAVNHDLPVFEYAARLVKQTVVGIGSADKVQ 121
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYY 163
+ M+ ++ S DAADALAIA+ HA+ +
Sbjct: 122 VQEMITRILKLSDKPQADAADALAIAITHAHSIQHSLH 159
>gi|120403559|ref|YP_953388.1| Holliday junction resolvase [Mycobacterium vanbaalenii PYR-1]
gi|166233273|sp|A1T882|RUVC_MYCVP RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|119956377|gb|ABM13382.1| Holliday junction endonuclease RuvC [Mycobacterium vanbaalenii
PYR-1]
Length = 194
Score = 137 bits (345), Expect = 5e-31, Method: Composition-based stats.
Identities = 48/156 (30%), Positives = 81/156 (51%), Gaps = 2/156 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R++G+DPGL R G +++ G + + + + LA RL + + + +
Sbjct: 1 MRVMGVDPGLTRCGLSVIESGKGRQVIALDVDVVRTPAGHPLAHRLLAISDAVDHWLDTH 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
RP+ A+E+VF N++A + QA + L+ A I V + P+ +K AV G G DK
Sbjct: 61 RPDVIAIERVFSNQNANTAMGTAQAGGVIALAAARRDIDVHFHTPSEVKAAVTGNGRADK 120
Query: 124 KQIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHA 158
Q+ M+ ++ DAADALA+A+CH + A
Sbjct: 121 AQVTEMVTRILALQQKPTPADAADALALAICHCWRA 156
>gi|86157378|ref|YP_464163.1| crossover junction endodeoxyribonuclease RuvC [Anaeromyxobacter
dehalogenans 2CP-C]
gi|123764248|sp|Q2IPJ7|RUVC_ANADE RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|85773889|gb|ABC80726.1| crossover junction endodeoxyribonuclease RuvC [Anaeromyxobacter
dehalogenans 2CP-C]
Length = 185
Score = 137 bits (345), Expect = 5e-31, Method: Composition-based stats.
Identities = 63/154 (40%), Positives = 86/154 (55%), Gaps = 2/154 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ ++GIDPG RR G+G+V G L V SG + +A RL ++ +GL +I R
Sbjct: 1 MIVLGIDPGSRRCGYGVVAREGARLTVVESGVL-VPGDLPMAQRLGRILDGLDALIARAR 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P EA+VE VF + L LGQAR +A+ + A A +PV EYAP+ +K A G G K
Sbjct: 60 PAEASVEAVFSGASPRSALVLGQARGVALAAAARAGLPVFEYAPSEVKLAFTGNGRAGKD 119
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHA 158
Q+ +ML+ + D ADALAIAVCH
Sbjct: 120 QMLRTARMLLG-AAPGLSDEADALAIAVCHLARR 152
>gi|294678732|ref|YP_003579347.1| crossover junction endodeoxyribonuclease RuvC [Rhodobacter
capsulatus SB 1003]
gi|294477552|gb|ADE86940.1| crossover junction endodeoxyribonuclease RuvC [Rhodobacter
capsulatus SB 1003]
Length = 183
Score = 137 bits (345), Expect = 5e-31, Method: Composition-based stats.
Identities = 92/164 (56%), Positives = 113/164 (68%), Gaps = 1/164 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+R+IGIDPGLR GWG+++V G L +++G I LA RL L+ GLT VI R
Sbjct: 1 MRVIGIDPGLRNLGWGVIEVDGARLRHIANGIIH-SEGTDLAKRLVVLHAGLTAVIATHR 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
PE AAVEQ FVNKDAVATLKLGQAR IA+L PA A + + EYAPN +KKAV+GVGH DK
Sbjct: 60 PEAAAVEQTFVNKDAVATLKLGQARGIALLVPAQAGLEIGEYAPNAVKKAVVGVGHADKG 119
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
Q+ M++ +P F G DAADALAIA+CHA+H S A+
Sbjct: 120 QVQHMVRHQLPGVVFDGPDAADALAIAICHAHHLQSARRASAAM 163
>gi|16272268|ref|NP_438480.1| Holliday junction resolvase [Haemophilus influenzae Rd KW20]
gi|260581218|ref|ZP_05849037.1| crossover junction endodeoxyribonuclease RuvC [Haemophilus
influenzae RdAW]
gi|1173332|sp|P44633|RUVC_HAEIN RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|1573284|gb|AAC21978.1| crossover junction endodeoxyribonuclease (ruvC) [Haemophilus
influenzae Rd KW20]
gi|260092143|gb|EEW76087.1| crossover junction endodeoxyribonuclease RuvC [Haemophilus
influenzae RdAW]
Length = 190
Score = 137 bits (345), Expect = 6e-31, Method: Composition-based stats.
Identities = 65/158 (41%), Positives = 99/158 (62%), Gaps = 1/158 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G +L ++ SG I + V + L RL ++Y G+T++I ++P
Sbjct: 3 IILGIDPGSRVTGYGVIRQTGKHLEYLGSGAIRTQV-EDLPTRLKRIYAGVTEIITQFQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
A+EQVF+ K+A + LKLGQAR AI++ +PV EYA +K+ V+G+G DK Q
Sbjct: 62 NMFAIEQVFMAKNADSALKLGQARGTAIVAAVNNDLPVFEYAARLVKQTVVGIGSADKVQ 121
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYY 163
+ M+ ++ S DAADALAIA+ HA+ +
Sbjct: 122 VQEMVTRILKLSDKPQADAADALAIAITHAHSIQHSLH 159
>gi|301169023|emb|CBW28620.1| component of RuvABC resolvasome, endonuclease [Haemophilus
influenzae 10810]
Length = 190
Score = 137 bits (345), Expect = 6e-31, Method: Composition-based stats.
Identities = 53/136 (38%), Positives = 84/136 (61%), Gaps = 1/136 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R G+G++ G +L ++ SG I + V + L RL ++Y G+T++I ++P
Sbjct: 3 IILGIDPGSRVAGYGVIRQTGRHLEYLGSGAIRTQV-EDLPTRLKRIYAGVTEIITQFQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
A+EQVF+ K+A + LKLGQAR AI++ +PV EYA +K+ V+G+G DK Q
Sbjct: 62 NMFAIEQVFMAKNADSALKLGQARGTAIVAAVNHDLPVFEYAARLVKQTVVGIGSADKVQ 121
Query: 126 IHMMLKMLMPESFFKG 141
+ M+ ++ S
Sbjct: 122 VQEMVTRILKLSDKPQ 137
>gi|269795057|ref|YP_003314512.1| Holliday junction endonuclease RuvC [Sanguibacter keddieii DSM
10542]
gi|269097242|gb|ACZ21678.1| Holliday junction endonuclease RuvC [Sanguibacter keddieii DSM
10542]
Length = 189
Score = 137 bits (345), Expect = 6e-31, Method: Composition-based stats.
Identities = 51/155 (32%), Positives = 84/155 (54%), Gaps = 2/155 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVD-VAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R++G+DPGL R G G+VD V G V+ G +S ++ RL Q+ L +
Sbjct: 1 MRVLGVDPGLTRCGIGVVDSVTGRRARLVAVGVAMSPPTDTVDARLLQIATELDAWMDAH 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
P+ AVE+VF + + Q +A+++ A +PV+ + P+ +K AV G G K
Sbjct: 61 TPDVVAVERVFAQHNVSTVMGTAQVAGLAMVAAARRGVPVAMHTPSEVKAAVTGSGRAGK 120
Query: 124 KQIHMMLKMLMPESF-FKGKDAADALAIAVCHAYH 157
+Q+ M+ ++ S + DAADALA+A+CH +
Sbjct: 121 EQVQKMVAQILGLSEVPRPADAADALALAICHLWR 155
>gi|56417274|ref|YP_154348.1| holliday (crossover) junction endodeoxyribonuclease [Anaplasma
marginale str. St. Maries]
gi|81599081|sp|Q5P9D7|RUVC_ANAMM RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|56388506|gb|AAV87093.1| holliday (crossover) junction endodeoxyribonuclease [Anaplasma
marginale str. St. Maries]
Length = 165
Score = 137 bits (345), Expect = 6e-31, Method: Composition-based stats.
Identities = 50/164 (30%), Positives = 89/164 (54%), Gaps = 3/164 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+ IIGIDPGL TGWG+V +C + SG I + + +L ++Y L V+ +
Sbjct: 1 MMIIGIDPGLEFTGWGVVSSTNSQSVCLLDSGVISTRGISRESEKLYKIYVSLLSVLSLY 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
+ +EA++E+VF+N + +++ L ARA + +S I + EY+ IKK + G G K
Sbjct: 61 KIDEASIEKVFINSNPRSSMSLCYARAASTISVMSRGIDIYEYSSTAIKKCITGNGMAPK 120
Query: 124 KQIHMMLKMLMPESFF--KGKDAADALAIAVCHAYHANSGYYKI 165
+Q+ M++ + ++DA+A A+CH Y+ + + +
Sbjct: 121 EQVSFMVRSSLGIKQDVEINNHSSDAIAAALCHVYNTRNRNFAL 164
>gi|255020123|ref|ZP_05292193.1| Crossover junction endodeoxyribonuclease ruvC [Acidithiobacillus
caldus ATCC 51756]
gi|254970416|gb|EET27908.1| Crossover junction endodeoxyribonuclease ruvC [Acidithiobacillus
caldus ATCC 51756]
Length = 166
Score = 136 bits (344), Expect = 7e-31, Method: Composition-based stats.
Identities = 68/159 (42%), Positives = 100/159 (62%), Gaps = 2/159 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGD-NLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+RIIGIDPG RTG+G+++V G L V G + + R+ ++ GL +V+ +
Sbjct: 1 MRIIGIDPGSLRTGYGVIEVDGRGRLRSVGYGCL-MVAGRPFLERIGAIHAGLLEVLAEF 59
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
RP+EAA+E VF+ ++A + LKLGQAR A+++ +PV EY IKKA +G GH K
Sbjct: 60 RPDEAAIEAVFMARNADSALKLGQARGAALVALLQEGLPVHEYTALQIKKAAVGGGHAAK 119
Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGY 162
+Q+ M+++L+ S DAADALA AVCHA+HA +
Sbjct: 120 EQVQHMVRILLSLSEAPQADAADALACAVCHAHHAGTRA 158
>gi|160902929|ref|YP_001568510.1| crossover junction endodeoxyribonuclease RuvC [Petrotoga mobilis
SJ95]
gi|189046071|sp|A9BIM4|RUVC_PETMO RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|160360573|gb|ABX32187.1| crossover junction endodeoxyribonuclease RuvC [Petrotoga mobilis
SJ95]
Length = 163
Score = 136 bits (344), Expect = 7e-31, Method: Composition-based stats.
Identities = 42/123 (34%), Positives = 72/123 (58%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ I+GIDPG R G+G+++ G+ + G I + L RL + E L ++I+ ++
Sbjct: 1 MVILGIDPGYGRIGYGVLEKKGNMFNLIDYGVIYTSKEDELPKRLLNIDEQLRNLIETYK 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+E+AVE+++ K+ +++G+AR + +L IP+ EY P IK+AV G G +K
Sbjct: 61 PDESAVEKLYFFKNVATAIQVGEARGVILLCLEKENIPIYEYTPFQIKQAVTGYGRAEKG 120
Query: 125 QIH 127
QI
Sbjct: 121 QIQ 123
>gi|33151782|ref|NP_873135.1| Holliday junction resolvase [Haemophilus ducreyi 35000HP]
gi|38372439|sp|Q7VNF5|RUVC_HAEDU RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|33148003|gb|AAP95524.1| crossover junction endodeoxyribonuclease [Haemophilus ducreyi
35000HP]
Length = 192
Score = 136 bits (344), Expect = 7e-31, Method: Composition-based stats.
Identities = 65/154 (42%), Positives = 93/154 (60%), Gaps = 1/154 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+GI+ G L ++ SG I L RL +Y G+T++I ++P
Sbjct: 3 IILGIDPGSRITGYGIIRQQGRQLEYLGSGAIRINAS-DLPSRLKHIYAGVTEIITQFQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQVF+ K+A + LKLGQAR AI++ +PV EYA +K+ V G+G DK Q
Sbjct: 62 DMFAIEQVFMAKNADSALKLGQARGTAIVAAVNHDLPVFEYAARLVKQTVTGIGSADKLQ 121
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHAN 159
+ M+ ++ S DAADALAIA+ HA+
Sbjct: 122 VQDMVTRMLQLSAKPQVDAADALAIAITHAHSIQ 155
>gi|325678948|ref|ZP_08158546.1| crossover junction endodeoxyribonuclease RuvC [Ruminococcus albus
8]
gi|324109452|gb|EGC03670.1| crossover junction endodeoxyribonuclease RuvC [Ruminococcus albus
8]
Length = 170
Score = 136 bits (344), Expect = 7e-31, Method: Composition-based stats.
Identities = 40/135 (29%), Positives = 74/135 (54%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPG G+G V+ V GTI + RL +Y + +I+++R
Sbjct: 1 MRIMGIDPGYGIVGYGFVEYDHGKFTPVKVGTITTPSDMEFYKRLRVIYLDMQKLIEHYR 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+E AVE++F N + + + QAR + +L + +P+ +Y P +K ++ G G+ +KK
Sbjct: 61 PDEIAVEKLFFNTNITTGIDVAQARGVTLLPAVMMNLPIYDYTPLQVKSSITGYGYAEKK 120
Query: 125 QIHMMLKMLMPESFF 139
Q+ M++ ++ +
Sbjct: 121 QVQEMVRSMLHLANI 135
>gi|281358768|ref|ZP_06245244.1| crossover junction endodeoxyribonuclease RuvC [Victivallis vadensis
ATCC BAA-548]
gi|281314795|gb|EFA98832.1| crossover junction endodeoxyribonuclease RuvC [Victivallis vadensis
ATCC BAA-548]
Length = 169
Score = 136 bits (344), Expect = 7e-31, Method: Composition-based stats.
Identities = 45/153 (29%), Positives = 86/153 (56%), Gaps = 2/153 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAG-DNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+ I+GIDP +R TG+G++ +L + G I + + + L +L G+ ++++ +
Sbjct: 1 MVILGIDPAIRTTGYGVIRTDSLSHLEILDCGVIANSPKLPHSECLRRLAGGIRELVQAF 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
P+ A++E+ F+ ++A + LG AR + + + +P Y+P T K+A +G G K
Sbjct: 61 HPDYASIEEPFMGRNASTAIILGMARGGILTALVESGVPTYAYSPKTAKRAAVGTGMATK 120
Query: 124 KQIHMMLKMLMPESFFK-GKDAADALAIAVCHA 155
+QI ++L + + D+ DALA+A+CHA
Sbjct: 121 EQIAILLAAELGIEIERIPLDSTDALALAICHA 153
>gi|114799962|ref|YP_758879.1| Holliday junction resolvase [Hyphomonas neptunium ATCC 15444]
gi|122942819|sp|Q0C5W4|RUVC_HYPNA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|114740136|gb|ABI78261.1| crossover junction endodeoxyribonuclease RuvC [Hyphomonas neptunium
ATCC 15444]
Length = 167
Score = 136 bits (344), Expect = 7e-31, Method: Composition-based stats.
Identities = 55/137 (40%), Positives = 86/137 (62%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M IRI+GIDPGLR TGWG+++ +G L ++ G I S+A RL ++E + ++
Sbjct: 1 MSTPIRILGIDPGLRHTGWGVIEQSGARLVHIAHGVIDPPTDLSMAERLGHIFEAVGELA 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
++ P A VE+ VN + + LKLGQAR A+ + A+A + V+E+AP IK +V+G G
Sbjct: 61 RHHAPHAAGVEETLVNANPRSALKLGQARGAAMAALAMAGVSVAEFAPRQIKLSVVGTGT 120
Query: 121 GDKKQIHMMLKMLMPES 137
DK Q+ M++ L+P +
Sbjct: 121 ADKDQVKFMVQRLLPRA 137
>gi|257784698|ref|YP_003179915.1| crossover junction endodeoxyribonuclease RuvC [Atopobium parvulum
DSM 20469]
gi|257473205|gb|ACV51324.1| crossover junction endodeoxyribonuclease RuvC [Atopobium parvulum
DSM 20469]
Length = 167
Score = 136 bits (344), Expect = 8e-31, Method: Composition-based stats.
Identities = 45/139 (32%), Positives = 76/139 (54%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ I+GIDPGL TGWGIV+ G + G I + + + RL ++Y + DVI +
Sbjct: 1 MVILGIDPGLAHTGWGIVETRGSECRARAYGCITTTADEPIDMRLGRIYNQIIDVIDKFS 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
PE ++E ++ ++ + + AR AI++ + A + V EY P IK+AV+G G DK+
Sbjct: 61 PEALSIESIYFGQNVKSAIPTAHARGAAIVACSKAGLTVGEYTPMQIKQAVVGTGAADKQ 120
Query: 125 QIHMMLKMLMPESFFKGKD 143
Q+ M++ ++ D
Sbjct: 121 QVMYMVQNILCLDHQPHPD 139
>gi|187736503|ref|YP_001878615.1| crossover junction endodeoxyribonuclease RuvC [Akkermansia
muciniphila ATCC BAA-835]
gi|238691872|sp|B2UP63|RUVC_AKKM8 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|187426555|gb|ACD05834.1| crossover junction endodeoxyribonuclease RuvC [Akkermansia
muciniphila ATCC BAA-835]
Length = 167
Score = 136 bits (344), Expect = 8e-31, Method: Composition-based stats.
Identities = 47/161 (29%), Positives = 85/161 (52%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+ IDP +R TG+ +V+ + GT+ S + L + + L ++I W
Sbjct: 1 MRILAIDPAIRNTGYAVVEGDYRRARALDYGTLSIPRSVSQSGCLLAIKQHLGNLIDKWN 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+E AVE++ + + +G A+A +++ A A + + EY+P ++K +V+G G K
Sbjct: 61 PDEMAVERIIYVQSHQTAITMGAAKAAVVIAAAEAGLRIMEYSPKSVKLSVVGRGAAQKT 120
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
Q+ M++ L+ DAADALAI + H + A+ +
Sbjct: 121 QVAFMVRALLELRETPESDAADALAIGLTHLFSADPLKAHM 161
>gi|217976202|ref|YP_002360349.1| Holliday junction resolvase [Methylocella silvestris BL2]
gi|254767478|sp|B8EJI4|RUVC_METSB RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|217501578|gb|ACK48987.1| crossover junction endodeoxyribonuclease RuvC [Methylocella
silvestris BL2]
Length = 176
Score = 136 bits (344), Expect = 9e-31, Method: Composition-based stats.
Identities = 76/137 (55%), Positives = 99/137 (72%)
Query: 2 RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
R +IRIIGIDPGLR GWG+++ +G L F++ G++ S SLA RLC L+EGL VI
Sbjct: 3 RAAIRIIGIDPGLRNMGWGVIEASGSRLSFIACGSVHSQAGSSLAERLCALHEGLLGVIA 62
Query: 62 NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
+ P EAAVE+ FVN D + LKLGQAR +A+++PALA +PV+EYA N IKK V+G GH
Sbjct: 63 DLSPMEAAVEETFVNCDPQSALKLGQARGVALVAPALAGLPVAEYAANLIKKTVVGNGHA 122
Query: 122 DKKQIHMMLKMLMPESF 138
+K QI MM+K L+P S
Sbjct: 123 EKAQIAMMVKFLLPMSE 139
>gi|326329832|ref|ZP_08196152.1| crossover junction endodeoxyribonuclease RuvC [Nocardioidaceae
bacterium Broad-1]
gi|325952418|gb|EGD44438.1| crossover junction endodeoxyribonuclease RuvC [Nocardioidaceae
bacterium Broad-1]
Length = 182
Score = 136 bits (343), Expect = 9e-31, Method: Composition-based stats.
Identities = 42/137 (30%), Positives = 71/137 (51%), Gaps = 1/137 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R++GIDPGL R G G+VD + G L V G I + + RL + +G+ I+
Sbjct: 1 MRVLGIDPGLTRCGMGVVDGSLGRPLSMVDVGVIRTSADLPVWERLVSIEKGIDAWIEEH 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
RP+ A+E++F + + QA +A++ A +PV+ + P+ +K AV G G DK
Sbjct: 61 RPDAVAIERIFARSNVSTIMGTAQASGLAMVCAARRGLPVALHTPSEVKAAVSGNGRADK 120
Query: 124 KQIHMMLKMLMPESFFK 140
Q+ M+ ++
Sbjct: 121 AQVTAMVTRILRLPTPP 137
>gi|52217413|dbj|BAD50006.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides fragilis
YCH46]
Length = 169
Score = 136 bits (343), Expect = 9e-31, Method: Composition-based stats.
Identities = 45/146 (30%), Positives = 76/146 (52%), Gaps = 3/146 (2%)
Query: 17 TGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVN 76
G+G++ V G ++ G I + +L ++E + +I+++ P+E A+E F
Sbjct: 1 MGYGVLRVCGTRPEMIAMGIIDLRKFGNHYLKLRHIHERVLSIIESYLPDELAIEAPFFG 60
Query: 77 KDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLM-- 134
K+ + LKLG+A+ +A+ + IP++EYAP IK A+ G G K+Q+ ML+ ++
Sbjct: 61 KNVQSMLKLGRAQGVAMAAALSRDIPITEYAPLKIKMAITGNGQASKEQVADMLQRMLHF 120
Query: 135 -PESFFKGKDAADALAIAVCHAYHAN 159
E DA D LA A CH
Sbjct: 121 AKEDMPVFMDATDGLAAAYCHFLQMG 146
>gi|317124984|ref|YP_004099096.1| Holliday junction endonuclease RuvC [Intrasporangium calvum DSM
43043]
gi|315589072|gb|ADU48369.1| Holliday junction endonuclease RuvC [Intrasporangium calvum DSM
43043]
Length = 192
Score = 136 bits (343), Expect = 9e-31, Method: Composition-based stats.
Identities = 42/134 (31%), Positives = 67/134 (50%), Gaps = 1/134 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVD-VAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R++ +DPGL R G G++D + G L V G I + + RL L E L + +
Sbjct: 1 MRVLAVDPGLTRCGVGVIDGLPGRRLSLVEVGVIRTPSTDATPKRLVALEEELREWFERT 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
RPE A+E+VF + + L Q I ++ +PV+ + P +K AV G G DK
Sbjct: 61 RPEAVAIERVFADTNLSTVLGTAQCTGIVMMLAERRGLPVTLHTPTEVKAAVSGSGRADK 120
Query: 124 KQIHMMLKMLMPES 137
+Q+ M+ L+
Sbjct: 121 RQVTTMVTRLLGLD 134
>gi|312139493|ref|YP_004006829.1| crossover junction endodeoxyribonuclease ruvc [Rhodococcus equi
103S]
gi|325672617|ref|ZP_08152313.1| crossover junction endoribonuclease subunit C [Rhodococcus equi
ATCC 33707]
gi|311888832|emb|CBH48144.1| crossover junction endodeoxyribonuclease RuvC [Rhodococcus equi
103S]
gi|325556494|gb|EGD26160.1| crossover junction endoribonuclease subunit C [Rhodococcus equi
ATCC 33707]
Length = 191
Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats.
Identities = 55/156 (35%), Positives = 86/156 (55%), Gaps = 2/156 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R++G+DPGL R G+G+VD G + V+ + + LA RL ++ E + + +
Sbjct: 1 MRVLGVDPGLTRCGFGVVDAGRGREVRPVAVDVVRTPPEMELASRLLRISEAADEWLDRF 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
RP AVE+VF + + QA + L+ A IPV + P+ +K AV G G DK
Sbjct: 61 RPTVVAVERVFAQHNVRTAMGTAQAGGVVALAAAKRGIPVCFHTPSQVKAAVTGSGTADK 120
Query: 124 KQIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHA 158
KQ+ M+ ++ + K DAADALA+A+CH + A
Sbjct: 121 KQVTAMVTRILGLDTPPKPADAADALALAICHCWRA 156
>gi|227542218|ref|ZP_03972267.1| Holliday junction resolvase [Corynebacterium glucuronolyticum ATCC
51866]
gi|227182047|gb|EEI63019.1| Holliday junction resolvase [Corynebacterium glucuronolyticum ATCC
51866]
Length = 222
Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats.
Identities = 47/143 (32%), Positives = 76/143 (53%), Gaps = 3/143 (2%)
Query: 1 MRKSI--RIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLT 57
M ++ R++GIDPGL R G IV G + V+ G + + S+ RL +LYE +T
Sbjct: 1 MESTVGLRVLGIDPGLTRCGLSIVQAGKGRTVIPVAVGVARTPYKSSMGDRLKELYEAIT 60
Query: 58 DVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIG 117
D I ++P+ A+E++F + L A + IL+ + A + V EY P+ +KKA+ G
Sbjct: 61 DWIAEYKPDVVAMERLFERGEVSTVLHTAHAVGVLILAASQANLDVHEYTPSQVKKAITG 120
Query: 118 VGHGDKKQIHMMLKMLMPESFFK 140
G DKKQ+ M+ ++
Sbjct: 121 NGRADKKQMTAMVTRILGLENPP 143
>gi|85712317|ref|ZP_01043368.1| Holliday junction resolvasome, endonuclease subunit [Idiomarina
baltica OS145]
gi|85693944|gb|EAQ31891.1| Holliday junction resolvasome, endonuclease subunit [Idiomarina
baltica OS145]
Length = 179
Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats.
Identities = 69/166 (41%), Positives = 107/166 (64%), Gaps = 5/166 (3%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIV----SCVRQSLAFRLCQLYEGLTDVIKN 62
I+GIDPG R TG+GI+ G +L +++SG I + SLA +L +++ + ++I
Sbjct: 4 ILGIDPGSRLTGFGIIQQQGRHLSYIASGCIRVTGTTAQPLSLAEKLKRIHNSVVELITQ 63
Query: 63 WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
++P+E A+EQVF+ ++ + LKLGQAR AI++ A A +PV+EY+ IK+AV+G G D
Sbjct: 64 YQPDEFAIEQVFMARNPDSALKLGQARGAAIVAAACADLPVAEYSARQIKQAVVGNGGAD 123
Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
K Q+ M+ L+ S DAADALA+A+CHA+ A S K++
Sbjct: 124 KTQVQHMVMALLNLSKSPQADAADALAVALCHAHSAQS-LIKMSGA 168
>gi|145631438|ref|ZP_01787208.1| Holliday junction resolvase [Haemophilus influenzae R3021]
gi|144982975|gb|EDJ90484.1| Holliday junction resolvase [Haemophilus influenzae R3021]
Length = 190
Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats.
Identities = 64/158 (40%), Positives = 99/158 (62%), Gaps = 1/158 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G +L ++ SG I + V + L RL ++Y G+ ++I ++P
Sbjct: 3 IILGIDPGSRVTGYGVIRQTGRHLEYLGSGAIRTQV-EDLPTRLKRIYAGVAEIITQFQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQVF+ K+A + LKLGQAR AI++ +PV EYA +K+ V+G+G DK Q
Sbjct: 62 DMFAIEQVFMAKNADSALKLGQARGTAIVAAVNHNLPVFEYAARLVKQTVVGIGSADKVQ 121
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYY 163
+ M+ ++ S DAADALAIA+ HA+ +
Sbjct: 122 VQEMITRILKLSDKPQADAADALAIAITHAHSIQHSLH 159
>gi|298293004|ref|YP_003694943.1| crossover junction endodeoxyribonuclease RuvC [Starkeya novella DSM
506]
gi|296929515|gb|ADH90324.1| crossover junction endodeoxyribonuclease RuvC [Starkeya novella DSM
506]
Length = 179
Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats.
Identities = 70/137 (51%), Positives = 95/137 (69%)
Query: 3 KSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
IRI+G+DPGLRRTGWG+++ G L F++ GT++ LA RL L+ L VI
Sbjct: 4 SPIRIVGLDPGLRRTGWGVIEAIGTKLSFIACGTVLPPEDDDLAARLAYLHTELVRVISV 63
Query: 63 WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
P+EAAVE+ FVN + +TLKLGQAR + +L+PALA +PVSEYA +KK V+G G D
Sbjct: 64 HAPDEAAVEETFVNMNPASTLKLGQARGVVMLTPALAGVPVSEYAALLVKKTVVGAGRAD 123
Query: 123 KKQIHMMLKMLMPESFF 139
K QI MM+K+L+P++ F
Sbjct: 124 KAQIRMMIKVLLPKADF 140
>gi|291301299|ref|YP_003512577.1| crossover junction endodeoxyribonuclease RuvC [Stackebrandtia
nassauensis DSM 44728]
gi|290570519|gb|ADD43484.1| crossover junction endodeoxyribonuclease RuvC [Stackebrandtia
nassauensis DSM 44728]
Length = 176
Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats.
Identities = 57/167 (34%), Positives = 93/167 (55%), Gaps = 2/167 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNL-CFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R++G+DPGL R G GIV+ A V + + +L RL +L L +++ +
Sbjct: 1 MRVLGVDPGLTRCGVGIVEGAPGRPCRLVGVHVVRTDPEAALPDRLLRLDTALAQLVERY 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
+P+ AVE+VF + + + QA A+A+L+ A A + V+ Y P+ K A+ G G DK
Sbjct: 61 QPDAVAVERVFSQHNVASVIGTAQASAVAVLAGARAGVTVATYTPSEAKAAITGSGVADK 120
Query: 124 KQIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHANSGYYKIASQD 169
KQ+ M+ L+ + K DAADALA+A+CH + + A++D
Sbjct: 121 KQMTTMVTKLLRLDAPPKPADAADALALAICHVWRGGTQARFTAARD 167
>gi|77163676|ref|YP_342201.1| crossover junction endodeoxyribonuclease RuvC [Nitrosococcus oceani
ATCC 19707]
gi|254435564|ref|ZP_05049071.1| crossover junction endodeoxyribonuclease RuvC [Nitrosococcus oceani
AFC27]
gi|97274860|sp|Q3JES5|RUVC_NITOC RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|76881990|gb|ABA56671.1| Holliday junction endonuclease RuvC [Nitrosococcus oceani ATCC
19707]
gi|207088675|gb|EDZ65947.1| crossover junction endodeoxyribonuclease RuvC [Nitrosococcus oceani
AFC27]
Length = 174
Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats.
Identities = 52/135 (38%), Positives = 86/135 (63%), Gaps = 1/135 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
RI+GIDPG R TG+G+++ ++++G I LA RL Q+++G+T +I+ + P
Sbjct: 3 RILGIDPGSRITGYGLIETNNKKTVYIAAGCIR-AGEGGLAERLGQIFQGITGIIQAYHP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+E AVEQVF++++ + LKLGQAR AI + A +P+ EY P+ +K+AV+G G K Q
Sbjct: 62 DEVAVEQVFMHQNPGSALKLGQARGAAICAAVNAVLPIFEYTPSQVKQAVVGRGDAAKSQ 121
Query: 126 IHMMLKMLMPESFFK 140
+ M+++L+
Sbjct: 122 VQYMIRLLLKLPAEP 136
>gi|222475638|ref|YP_002564055.1| holliday (crossover) junction endodeoxyribonuclease (ruvC)
[Anaplasma marginale str. Florida]
gi|254767456|sp|B9KH95|RUVC_ANAMF RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|222419776|gb|ACM49799.1| holliday (crossover) junction endodeoxyribonuclease (ruvC)
[Anaplasma marginale str. Florida]
Length = 165
Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats.
Identities = 50/164 (30%), Positives = 89/164 (54%), Gaps = 3/164 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+ IIGIDPGL TGWG+V +C + SG I + + +L ++Y L V+ +
Sbjct: 1 MMIIGIDPGLEFTGWGVVSSTNSQSVCLLDSGVISTRGISRESEKLYKIYVSLLSVLSLY 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
+ +EA++E+VF+N + +++ L ARA + +S I + EY+ IKK + G G K
Sbjct: 61 KIDEASIEKVFINSNPRSSMSLCYARAASTISVMSRGIDIYEYSSTAIKKCITGSGMAPK 120
Query: 124 KQIHMMLKMLMPESFF--KGKDAADALAIAVCHAYHANSGYYKI 165
+Q+ M++ + ++DA+A A+CH Y+ + + +
Sbjct: 121 EQVSFMVRSSLGIKQDVEINNHSSDAIAAALCHVYNTRNRNFAL 164
>gi|254490135|ref|ZP_05103326.1| crossover junction endodeoxyribonuclease RuvC [Methylophaga
thiooxidans DMS010]
gi|224464621|gb|EEF80879.1| crossover junction endodeoxyribonuclease RuvC [Methylophaga
thiooxydans DMS010]
Length = 178
Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats.
Identities = 56/137 (40%), Positives = 87/137 (63%), Gaps = 1/137 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
RI+GIDPG R+TG+GI+++ G + V +G + A RL Q++EGLTD+I ++P
Sbjct: 3 RILGIDPGSRKTGFGIIELDGKKIKHVINGRL-MVGDGEFADRLKQIFEGLTDLIDRYQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
E A+E+VF++K+A + LKLGQAR AI + + V+EY+ IKKAV+G GH K Q
Sbjct: 62 EMMAIEKVFLHKNADSALKLGQARGAAICAAVSKDLAVAEYSATQIKKAVVGNGHAKKDQ 121
Query: 126 IHMMLKMLMPESFFKGK 142
+ M+ +++ +
Sbjct: 122 VQYMMSVILSLPEVPEE 138
>gi|145636552|ref|ZP_01792220.1| Holliday junction resolvase [Haemophilus influenzae PittHH]
gi|145270377|gb|EDK10312.1| Holliday junction resolvase [Haemophilus influenzae PittHH]
Length = 190
Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats.
Identities = 64/158 (40%), Positives = 99/158 (62%), Gaps = 1/158 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G +L ++ SG I + V + L RL ++Y G+ ++I ++P
Sbjct: 3 IILGIDPGSRVTGYGVIRQTGRHLEYLGSGAIRTQV-EDLPTRLKRIYAGVAEIITQFQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQVF+ K+A + LKLGQAR AI++ +PV EYA +K+ V+G+G DK Q
Sbjct: 62 DMFAIEQVFMAKNADSALKLGQARGTAIVAAVNHDLPVFEYAARLVKQTVVGIGSADKVQ 121
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYY 163
+ M+ ++ S DAADALAIA+ HA+ +
Sbjct: 122 VQEMITRILKLSDKPQADAADALAIAITHAHSIQHSLH 159
>gi|302527852|ref|ZP_07280194.1| crossover junction endodeoxyribonuclease RuvC [Streptomyces sp.
AA4]
gi|302436747|gb|EFL08563.1| crossover junction endodeoxyribonuclease RuvC [Streptomyces sp.
AA4]
Length = 200
Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats.
Identities = 44/139 (31%), Positives = 71/139 (51%), Gaps = 1/139 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R++G+DPGL R G G+VD G ++ V+ G + + Q LA RL + + + + +
Sbjct: 1 MRVLGVDPGLTRCGLGVVDGGKGRSVRPVAVGVVRTPADQDLAQRLLGVADEVERWLDRY 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
RPE AVE+VF + + QA + L+ A +PV + P+ +K AV G G DK
Sbjct: 61 RPEAVAVERVFAQHNVRTAMGTAQAGGVVALAAARRGLPVVFHTPSEVKAAVTGSGRADK 120
Query: 124 KQIHMMLKMLMPESFFKGK 142
Q+ M+ L+
Sbjct: 121 AQVTTMVMRLLGLEVKPHP 139
>gi|28493234|ref|NP_787395.1| crossover junction endodeoxyribonuclease [Tropheryma whipplei str.
Twist]
gi|28572652|ref|NP_789432.1| crossover junction endodeoxyribonuclease RuvC [Tropheryma whipplei
TW08/27]
gi|28410784|emb|CAD67170.1| crossover junction endodeoxyribonuclease RuvC [Tropheryma whipplei
TW08/27]
gi|28476275|gb|AAO44364.1| crossover junction endodeoxyribonuclease [Tropheryma whipplei str.
Twist]
Length = 183
Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats.
Identities = 37/151 (24%), Positives = 74/151 (49%), Gaps = 2/151 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGD-NLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+RI+ +DPGL G +V+ G +L ++ + S R+ ++ + L +++ +
Sbjct: 1 MRIMAVDPGLTNCGVAVVNATGPLSLELLAVKVFHTDRSLSFENRIGKIGDSLLSMLEEF 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
P+ A+E+VF + + +A ++ + P+ IK ++ G G+ K
Sbjct: 61 SPDLFALEKVFAQHNLSTVSGVAGVIGVASYLCYKHGTHIAFHTPSEIKASICGYGNAKK 120
Query: 124 KQIHMML-KMLMPESFFKGKDAADALAIAVC 153
QI M+ ++ + + DA+DALA+AVC
Sbjct: 121 DQIRSMVNRVFLSQDIPLRHDASDALALAVC 151
>gi|146277277|ref|YP_001167436.1| Holliday junction resolvase [Rhodobacter sphaeroides ATCC 17025]
gi|166233291|sp|A4WRW7|RUVC_RHOS5 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|145555518|gb|ABP70131.1| crossover junction endodeoxyribonuclease RuvC [Rhodobacter
sphaeroides ATCC 17025]
Length = 168
Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats.
Identities = 84/157 (53%), Positives = 109/157 (69%), Gaps = 1/157 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+R++GIDPGLR GWG++DV+G L V++G S LA RL L+ LTD++ +
Sbjct: 1 MRVLGIDPGLRNMGWGVIDVSGTRLAHVANGICHSDSG-DLAQRLLSLHRQLTDILARFA 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ AAVE FVNKD VATLKLGQAR IA+L PA A + V EYAPN +KK V+GVGH K+
Sbjct: 60 PDTAAVEHTFVNKDGVATLKLGQARGIALLVPAQAGLAVGEYAPNAVKKTVVGVGHAAKE 119
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSG 161
QI M+++ +P G DAADALA+A+CHA+H S
Sbjct: 120 QIQHMVRLHLPGVELAGADAADALAVAICHAHHVQSS 156
>gi|260427415|ref|ZP_05781394.1| crossover junction endodeoxyribonuclease RuvC [Citreicella sp.
SE45]
gi|260421907|gb|EEX15158.1| crossover junction endodeoxyribonuclease RuvC [Citreicella sp.
SE45]
Length = 162
Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats.
Identities = 70/135 (51%), Positives = 94/135 (69%), Gaps = 1/135 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+R++GIDPGLRR GWGI++ G L V++G S + LA RL ++ LT+V++ +
Sbjct: 1 MRVLGIDPGLRRLGWGIIEAEGSRLRHVANGVCESGTGE-LAVRLLSIHRQLTEVLRQYA 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ AAVEQ FVNKDA TLKLGQAR IA+L PA + V EYAPN++KK V+GVGH DK+
Sbjct: 60 PDVAAVEQTFVNKDAAGTLKLGQARGIALLVPAQFGLEVGEYAPNSVKKTVVGVGHADKR 119
Query: 125 QIHMMLKMLMPESFF 139
Q+ M+KM +P
Sbjct: 120 QVDHMVKMQLPGVQI 134
>gi|256788880|ref|ZP_05527311.1| Holliday junction resolvase [Streptomyces lividans TK24]
gi|289772768|ref|ZP_06532146.1| crossover junction endodeoxyribonuclease RuvC [Streptomyces
lividans TK24]
gi|289702967|gb|EFD70396.1| crossover junction endodeoxyribonuclease RuvC [Streptomyces
lividans TK24]
Length = 188
Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats.
Identities = 47/133 (35%), Positives = 72/133 (54%), Gaps = 1/133 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVD-VAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R++G+DPGL R G G+V+ VAG L + G + + L RL + +G+ +
Sbjct: 1 MRVLGVDPGLTRCGIGVVEGVAGRPLTMIGVGVVRTPADADLGHRLVAVEQGIEQWLDEH 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
RPE AVE+VF + + QA A+AIL + IPV+ + P+ +K AV G G DK
Sbjct: 61 RPEFVAVERVFSQHNVRTVMGTAQASAVAILCASRRGIPVALHTPSEVKAAVTGSGRADK 120
Query: 124 KQIHMMLKMLMPE 136
Q+ M+ L+
Sbjct: 121 AQVGAMVTRLLRL 133
>gi|83859807|ref|ZP_00953327.1| RuvC Holliday junction nuclease [Oceanicaulis alexandrii HTCC2633]
gi|83852166|gb|EAP90020.1| RuvC Holliday junction nuclease [Oceanicaulis alexandrii HTCC2633]
Length = 165
Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats.
Identities = 77/160 (48%), Positives = 104/160 (65%), Gaps = 1/160 (0%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M +IRI+GIDPGL TGWG++D G L VS G I + + +A RL +Y + +++
Sbjct: 1 MSSAIRILGIDPGLNATGWGVIDQTGSRLSLVSYGVIKAPSKAPMAERLTVIYNAIEELV 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
+P EAAVE FV+ AV+ LKLGQARA A+L+PA A + V EYAP +KKAV+G G
Sbjct: 61 IAHQPHEAAVEDQFVHASAVSALKLGQARAAAMLAPARAGLVVGEYAPKLVKKAVVGTGS 120
Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
+K Q+ M+ +L+P S A ALA+AVCHA+H NS
Sbjct: 121 AEKAQVAAMIAILLPGSKADADAAD-ALAVAVCHAHHRNS 159
>gi|296445109|ref|ZP_06887069.1| crossover junction endodeoxyribonuclease RuvC [Methylosinus
trichosporium OB3b]
gi|296257283|gb|EFH04350.1| crossover junction endodeoxyribonuclease RuvC [Methylosinus
trichosporium OB3b]
Length = 179
Score = 135 bits (341), Expect = 1e-30, Method: Composition-based stats.
Identities = 81/160 (50%), Positives = 112/160 (70%), Gaps = 1/160 (0%)
Query: 2 RKSIRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
++IRI+G+DPGLR TGWGI++ G L FV+ G++ S +LA RL QL GL ++I
Sbjct: 9 NETIRILGVDPGLRNTGWGIIEASRGSRLSFVACGSLHSDGDAALAERLAQLQRGLAEII 68
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
P EAAVE+ FVN+D + LKLG AR +A+ +PALA + V+EYA N +KK V+G GH
Sbjct: 69 TAHSPHEAAVEETFVNRDPQSALKLGLARGVALAAPALAGLEVAEYAANLVKKTVVGNGH 128
Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
+K Q+ MM+++L+P S + DAADALA+A+CHA H S
Sbjct: 129 AEKAQVAMMVRVLLPASRAESADAADALAVAICHAQHRAS 168
>gi|310816585|ref|YP_003964549.1| crossover junction endodeoxyribonuclease RuvC [Ketogulonicigenium
vulgare Y25]
gi|308755320|gb|ADO43249.1| crossover junction endodeoxyribonuclease RuvC [Ketogulonicigenium
vulgare Y25]
Length = 176
Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats.
Identities = 86/163 (52%), Positives = 114/163 (69%), Gaps = 1/163 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+R++GIDPGLR GWG++DV G + V++G I LA RL L+ LT V + +
Sbjct: 1 MRVLGIDPGLRNMGWGVIDVQGTRISHVANG-ICHSAGDDLAARLLSLHGQLTRVFETYA 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ AAVE FVN+DAVATLKLGQARAIA+L PA A + V EYAPN +KKA++GVGH DK
Sbjct: 60 PDTAAVENTFVNRDAVATLKLGQARAIALLVPAQAGLSVGEYAPNAVKKAIVGVGHADKG 119
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
Q+ M+++ +P G DAADALAIA+CHA+H+ S + A+
Sbjct: 120 QVEHMVRLHLPGVKLVGVDAADALAIAICHAHHSQSAGHLQAA 162
>gi|269837238|ref|YP_003319466.1| crossover junction endodeoxyribonuclease RuvC [Sphaerobacter
thermophilus DSM 20745]
gi|269786501|gb|ACZ38644.1| crossover junction endodeoxyribonuclease RuvC [Sphaerobacter
thermophilus DSM 20745]
Length = 168
Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats.
Identities = 45/137 (32%), Positives = 78/137 (56%), Gaps = 2/137 (1%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+G+DPG G+G+V V D + G + + + + RL +LYEGL+ +++ P
Sbjct: 7 IILGVDPGTALLGYGLV-VGNDEPLALEYGVLSTPSSERMPARLLKLYEGLSTLLRRHAP 65
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ +E++F +++ L +GQAR + +L+ A A +PV EY P +K+AV G G DK Q
Sbjct: 66 DVVVIEELFFSRNVTTALSVGQARGVVLLAAAQAGVPVVEYKPAEVKQAVAGYGKADKAQ 125
Query: 126 IHMMLKMLMPE-SFFKG 141
+ M+++L+ K
Sbjct: 126 MQEMVRILLNLDEVPKP 142
>gi|331697371|ref|YP_004333610.1| Crossover junction endodeoxyribonuclease ruvC [Pseudonocardia
dioxanivorans CB1190]
gi|326952060|gb|AEA25757.1| Crossover junction endodeoxyribonuclease ruvC [Pseudonocardia
dioxanivorans CB1190]
Length = 188
Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats.
Identities = 51/156 (32%), Positives = 82/156 (52%), Gaps = 2/156 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R++G+DPGL R G G+VD G + FV+ + + L RL + + I +
Sbjct: 1 MRVLGVDPGLTRCGIGVVDSTGGRGVEFVAVDVVRTPAHAPLPARLLAVADAADRWIAAF 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
P+ AVE+VF + + + QA + L+ A A +PV+ + P+ +K +V G G DK
Sbjct: 61 SPDVVAVERVFSQHNVRSVMGTAQASGVIALAAARAGLPVAFHTPSEVKASVTGAGRADK 120
Query: 124 KQIHMMLKMLMPESFFK-GKDAADALAIAVCHAYHA 158
Q+ M+ L+ DAADALA+A+CH +
Sbjct: 121 AQVTTMVTRLLRLDAPPRPADAADALALAICHCWRG 156
>gi|148555056|ref|YP_001262638.1| Holliday junction resolvase [Sphingomonas wittichii RW1]
gi|166233303|sp|A5V884|RUVC_SPHWW RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|148500246|gb|ABQ68500.1| crossover junction endodeoxyribonuclease RuvC [Sphingomonas
wittichii RW1]
Length = 165
Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats.
Identities = 73/159 (45%), Positives = 106/159 (66%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ +IG DPGL TGWG++ G+ L V++G I + L+ RL L+ L ++I+ +R
Sbjct: 1 MILIGFDPGLGTTGWGVIAADGNRLSHVANGQIKTEPSMELSRRLYLLHSALAEIIRTYR 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
PE AAVE+V N +A +TLKLGQAR + +L+ ALA + V EY P+ +KKAV+G G +K+
Sbjct: 61 PEAAAVEEVLGNSNAQSTLKLGQARGVVLLAAALAEVSVGEYHPSIVKKAVVGTGGAEKR 120
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYY 163
Q+ M+K+L+P + G DAADALA+AV HA+H S
Sbjct: 121 QVQAMVKVLLPGAKLSGPDAADALAVAVTHAHHLASARA 159
>gi|296282047|ref|ZP_06860045.1| Holliday junction resolvase [Citromicrobium bathyomarinum JL354]
Length = 155
Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats.
Identities = 49/134 (36%), Positives = 78/134 (58%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+G+DP L TGWG++ G L +++G I + + + RL QL L VI+ +RP
Sbjct: 3 IILGLDPSLTCTGWGVIRSEGSRLSHIANGQIATDAKAPMTERLAQLQRELAVVIEQYRP 62
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
A E++F+NK+ +TLKL QAR + + + V E+A +KK+V+G G +K+Q
Sbjct: 63 ARGACEEIFLNKNPKSTLKLAQARGSVLAACGAHGLDVREHAARYVKKSVVGTGAAEKRQ 122
Query: 126 IHMMLKMLMPESFF 139
+ MLK+L+P
Sbjct: 123 VQAMLKVLLPGVTI 136
>gi|255003631|ref|ZP_05278595.1| holliday (crossover) junction endodeoxyribonuclease [Anaplasma
marginale str. Puerto Rico]
gi|255004758|ref|ZP_05279559.1| holliday (crossover) junction endodeoxyribonuclease [Anaplasma
marginale str. Virginia]
Length = 164
Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats.
Identities = 50/162 (30%), Positives = 88/162 (54%), Gaps = 3/162 (1%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
IIGIDPGL TGWG+V +C + SG I + + +L ++Y L V+ ++
Sbjct: 2 IIGIDPGLEFTGWGVVSSTNSQSVCLLDSGVISTRGISRESEKLYKIYVSLLSVLSLYKI 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+EA++E+VF+N + +++ L ARA + +S I + EY+ IKK + G G K+Q
Sbjct: 62 DEASIEKVFINSNPRSSMSLCYARAASTISVMSRGIDIYEYSSTAIKKCITGNGMAPKEQ 121
Query: 126 IHMMLKMLMPESFF--KGKDAADALAIAVCHAYHANSGYYKI 165
+ M++ + ++DA+A A+CH Y+ + + +
Sbjct: 122 VSFMVRSSLGIKQDVEINNHSSDAIAAALCHVYNTRNRNFAL 163
>gi|297571392|ref|YP_003697166.1| crossover junction endodeoxyribonuclease RuvC [Arcanobacterium
haemolyticum DSM 20595]
gi|296931739|gb|ADH92547.1| crossover junction endodeoxyribonuclease RuvC [Arcanobacterium
haemolyticum DSM 20595]
Length = 206
Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats.
Identities = 43/139 (30%), Positives = 71/139 (51%), Gaps = 1/139 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAG-DNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+RI+GIDPGL R G ++D AG + VS G + + + RL + + L + I
Sbjct: 1 MRILGIDPGLTRCGICVLDAAGARRISLVSVGVARTDPQMAPHQRLLMISQELEETIHAH 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
RP+ AVE+VF + + + Q I +L+ A A +PV ++P+ +K AV G G K
Sbjct: 61 RPDVVAVERVFAQDNVRSVMSTAQVVGIVLLAAAKASLPVGMHSPSEVKAAVTGNGRAQK 120
Query: 124 KQIHMMLKMLMPESFFKGK 142
Q+ M++ ++
Sbjct: 121 IQVQTMVQRILGLDKLPRP 139
>gi|303253271|ref|ZP_07339420.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae
serovar 2 str. 4226]
gi|307248176|ref|ZP_07530204.1| Crossover junction endodeoxyribonuclease ruvC [Actinobacillus
pleuropneumoniae serovar 2 str. S1536]
gi|302647953|gb|EFL78160.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae
serovar 2 str. 4226]
gi|306855353|gb|EFM87528.1| Crossover junction endodeoxyribonuclease ruvC [Actinobacillus
pleuropneumoniae serovar 2 str. S1536]
Length = 192
Score = 135 bits (339), Expect = 3e-30, Method: Composition-based stats.
Identities = 65/154 (42%), Positives = 96/154 (62%), Gaps = 1/154 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G +L ++ SG I + V L RL ++Y G+T++I + P
Sbjct: 3 IILGIDPGSRVTGYGVIRQTGCHLEYLGSGAIRTSV-DDLPTRLKRIYAGVTEIITQFHP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQVF+ K+A + LKLGQAR AI++ +PV EYA +K+ V G+G DK Q
Sbjct: 62 DMFAIEQVFMAKNADSALKLGQARGTAIVAAVNHDLPVFEYAARLVKQTVTGIGSADKIQ 121
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHAN 159
+ M+ ++ S DAADALAIA+ HA+
Sbjct: 122 VQDMVTRMLQLSSKPQADAADALAIAITHAHSIQ 155
>gi|187611522|sp|A3PYW3|RUVC_MYCSJ RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|187611523|sp|A1UFA2|RUVC_MYCSK RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|187611524|sp|Q1B9R1|RUVC_MYCSS RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
Length = 185
Score = 135 bits (339), Expect = 3e-30, Method: Composition-based stats.
Identities = 47/156 (30%), Positives = 80/156 (51%), Gaps = 2/156 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R++G+DPGL R G +++ G + + + + + L RL + + + +
Sbjct: 1 MRVMGVDPGLTRCGLSVIESGQGRKVIALDVDVVRTPADEQLHRRLLIISDTVEHWMDTH 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
RP+ A+E+VF N +A + QA + L+ A I V + P+ +K AV G G DK
Sbjct: 61 RPDVIAIERVFANHNANTAMGTAQAGGVIALAAAKRDIDVHFHTPSEVKAAVTGNGRADK 120
Query: 124 KQIHMMLKMLMPES-FFKGKDAADALAIAVCHAYHA 158
Q+ M+ ++ DAADALA+A+CH + A
Sbjct: 121 AQVTEMVTRILALQAKPTPADAADALALAICHCWRA 156
>gi|84516660|ref|ZP_01004019.1| Holliday junction resolvase [Loktanella vestfoldensis SKA53]
gi|84509696|gb|EAQ06154.1| Holliday junction resolvase [Loktanella vestfoldensis SKA53]
Length = 168
Score = 135 bits (339), Expect = 3e-30, Method: Composition-based stats.
Identities = 88/163 (53%), Positives = 110/163 (67%), Gaps = 1/163 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+R++GIDPGLR GWG++DVAG + V++G I LA RL L++ L +I R
Sbjct: 1 MRVLGIDPGLRNMGWGLIDVAGSRITHVANG-IAHSTGDDLAMRLLSLHDQLAAMIALHR 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P +AAVEQ FVNKD V TLKLGQAR IA+L A A + + EYAPN IKKAV+GVGH DK
Sbjct: 60 PTQAAVEQTFVNKDGVGTLKLGQARGIALLVTAQAGLTIGEYAPNAIKKAVVGVGHADKV 119
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
QI M+K+ +P G DAADALAIA+CHA+H S A+
Sbjct: 120 QIAHMVKLQLPGVKLAGPDAADALAIAICHAHHLQSANRLNAA 162
>gi|220920331|ref|YP_002495632.1| Holliday junction resolvase [Methylobacterium nodulans ORS 2060]
gi|219944937|gb|ACL55329.1| crossover junction endodeoxyribonuclease RuvC [Methylobacterium
nodulans ORS 2060]
Length = 189
Score = 135 bits (339), Expect = 3e-30, Method: Composition-based stats.
Identities = 85/164 (51%), Positives = 115/164 (70%)
Query: 2 RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
+ +RI+GIDPGLRRTGWG++ V G L FVS G + S LA RL L++GL+ V+
Sbjct: 4 TEPVRILGIDPGLRRTGWGLITVTGTRLAFVSCGVLTSDGDDDLALRLRDLHDGLSRVVA 63
Query: 62 NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
+P+E AVE+ FVNKDA ATLKLG ARA+A+L PALA +PV+EYA N +KK V+G GH
Sbjct: 64 AMQPDEVAVEETFVNKDAQATLKLGHARAVALLVPALAGLPVAEYAANLVKKTVVGAGHA 123
Query: 122 DKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
+K QI M++ L+P++ DAADALA+A+ HA H + ++
Sbjct: 124 EKGQIAAMVRFLLPKADPATADAADALAVAITHAQHRAARAREL 167
>gi|171911217|ref|ZP_02926687.1| Holliday junction resolvase [Verrucomicrobium spinosum DSM 4136]
Length = 174
Score = 135 bits (339), Expect = 3e-30, Method: Composition-based stats.
Identities = 45/154 (29%), Positives = 78/154 (50%)
Query: 2 RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
+RI+ +DP LR TGW ++ G ++ G I + + + L + E L++VIK
Sbjct: 5 AAPVRILAVDPALRNTGWAVLQHEGRTTTALAYGVIQNPAKLLTSGCLVAIREQLSEVIK 64
Query: 62 NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
+ P AVE + + LG R +++ A +P+ +YAP +K+A +G G
Sbjct: 65 KFGPTSCAVESTIYVQSYKTAITLGSVRGAVLIAAAEHGLPIYDYAPREVKQAAVGKGAA 124
Query: 122 DKKQIHMMLKMLMPESFFKGKDAADALAIAVCHA 155
K+Q+ M++ ++ DAADALA+ + H
Sbjct: 125 AKEQVAFMMRSMLRLRETPPSDAADALAVGLAHI 158
>gi|289641362|ref|ZP_06473527.1| crossover junction endodeoxyribonuclease RuvC [Frankia symbiont of
Datisca glomerata]
gi|289508824|gb|EFD29758.1| crossover junction endodeoxyribonuclease RuvC [Frankia symbiont of
Datisca glomerata]
Length = 177
Score = 135 bits (339), Expect = 3e-30, Method: Composition-based stats.
Identities = 45/139 (32%), Positives = 70/139 (50%), Gaps = 1/139 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+ ++G+DPGL R G G+VD G V G + + +A RL L G+ + +
Sbjct: 1 MLVLGVDPGLTRCGLGVVDGGPGQQTSLVEVGVLRTPAADDVAARLWALERGVGEWLDRH 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
P+ AVE+VF + + QA A+AI+S A +PV+ Y P+ +K +V G G DK
Sbjct: 61 HPDAVAVERVFSQANVRTVMGTAQAGAVAIVSAARRGLPVALYTPSEVKASVSGSGRADK 120
Query: 124 KQIHMMLKMLMPESFFKGK 142
Q+ M+ L+ S
Sbjct: 121 TQVTFMVSRLLGLSDPPRP 139
>gi|148239937|ref|YP_001225324.1| crossover junction endodeoxyribonuclease RuvC [Synechococcus sp. WH
7803]
gi|166233305|sp|A5GM62|RUVC_SYNPW RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|147848476|emb|CAK24027.1| Crossover junction endodeoxyribonuclease RuvC (Holliday juction
resolvase ruvC) [Synechococcus sp. WH 7803]
Length = 154
Score = 135 bits (339), Expect = 3e-30, Method: Composition-based stats.
Identities = 41/138 (29%), Positives = 73/138 (52%), Gaps = 1/138 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPGL R G+G+++ AG + G I + + R+ ++ L +I+ W+
Sbjct: 1 MRILGIDPGLARVGYGVIETAGREQTMLDCGIIRTDSGRPEGERMVEIARDLRQLIRAWK 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
PE AAVE+ F + + + QAR + I++ + +P+ E+ P IK+A+ G GH DK
Sbjct: 61 PELAAVEKFFFYRSSNTIAVV-QARGVVIMTLSRFGLPIVEFPPMQIKQALTGHGHADKD 119
Query: 125 QIHMMLKMLMPESFFKGK 142
++ + +
Sbjct: 120 EVLEAVMRELSLETPPRP 137
>gi|220912787|ref|YP_002488096.1| Holliday junction resolvase [Arthrobacter chlorophenolicus A6]
gi|254767457|sp|B8H9D8|RUVC_ARTCA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|219859665|gb|ACL40007.1| crossover junction endodeoxyribonuclease RuvC [Arthrobacter
chlorophenolicus A6]
Length = 192
Score = 135 bits (339), Expect = 3e-30, Method: Composition-based stats.
Identities = 51/162 (31%), Positives = 86/162 (53%), Gaps = 2/162 (1%)
Query: 4 SIRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
++R++G+DPGL R G G+VDV V+ G + + +SL RL + + + +
Sbjct: 2 TLRVLGVDPGLTRCGIGVVDVERNRRATMVAVGVVGTSPDESLDQRLLVIATAIDEWLDR 61
Query: 63 WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
+ P+ AVE+VF + + + QA + I + A IPV+ + P+ +K AV G G +
Sbjct: 62 YEPQVLAVERVFSQLNVSTVMGVAQASGVVIAAAARRGIPVALHTPSEVKAAVTGSGSSN 121
Query: 123 KKQIHMMLKMLMPESFFK-GKDAADALAIAVCHAYHANSGYY 163
K + ++ ++ DAADALA+A+ HA+ A SG
Sbjct: 122 KDAVTKLVTKILRLDAPPRPADAADALALAITHAWRAGSGAS 163
>gi|256375827|ref|YP_003099487.1| crossover junction endodeoxyribonuclease RuvC [Actinosynnema mirum
DSM 43827]
gi|255920130|gb|ACU35641.1| crossover junction endodeoxyribonuclease RuvC [Actinosynnema mirum
DSM 43827]
Length = 330
Score = 134 bits (338), Expect = 3e-30, Method: Composition-based stats.
Identities = 40/134 (29%), Positives = 69/134 (51%), Gaps = 1/134 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R+ G+DPGL R G+G+VD G + V+ + + + L+ RL QL + + + +
Sbjct: 1 MRVFGVDPGLTRCGFGVVDGGTGRTVRPVAVDVVRTPADEDLSRRLLQLADAVEVWLDRY 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
P+ A+E+VF + + QA I L+ A +PV + P+ +K AV G G DK
Sbjct: 61 SPDVVAIERVFSQHNVRTAMGTAQAGGIVALAAARRDLPVEFHTPSEVKAAVTGSGRADK 120
Query: 124 KQIHMMLKMLMPES 137
Q+ M+ ++
Sbjct: 121 AQVTAMVTKVLGLK 134
>gi|297559813|ref|YP_003678787.1| crossover junction endodeoxyribonuclease RuvC [Nocardiopsis
dassonvillei subsp. dassonvillei DSM 43111]
gi|296844261|gb|ADH66281.1| crossover junction endodeoxyribonuclease RuvC [Nocardiopsis
dassonvillei subsp. dassonvillei DSM 43111]
Length = 185
Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats.
Identities = 50/161 (31%), Positives = 84/161 (52%), Gaps = 3/161 (1%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVD-VAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDV 59
MR+ +R++GIDPGL R G V+ G L + + + + L RL + G+ +
Sbjct: 1 MRR-VRVLGIDPGLTRCGVAAVEGAIGRPLTLLGADAVRTSPDTDLPHRLVGIERGIEEW 59
Query: 60 IKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVG 119
+ ++P+ AVE+VF + + QA IA++ A +PV+ + P+ K A+ G G
Sbjct: 60 LDRYQPDAVAVERVFAQHNLSTVMGTAQASGIALVCAARRGLPVAMHTPSEAKAAITGNG 119
Query: 120 HGDKKQIHMMLKMLMPES-FFKGKDAADALAIAVCHAYHAN 159
DK Q+ M+ ++ K DAADA+A+A+CH +
Sbjct: 120 RADKAQVGTMVARILGLDGPPKPADAADAVALAICHIWRGG 160
>gi|329893678|ref|ZP_08269812.1| Crossover junction endodeoxyribonuclease RuvC [gamma
proteobacterium IMCC3088]
gi|328923605|gb|EGG30917.1| Crossover junction endodeoxyribonuclease RuvC [gamma
proteobacterium IMCC3088]
Length = 172
Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats.
Identities = 51/135 (37%), Positives = 80/135 (59%), Gaps = 1/135 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R+TG+GI++ +V+SG I V +++ RL L E L ++I+ + P
Sbjct: 3 IILGIDPGSRKTGFGIIEFNQGKSRYVTSGVIRL-VDRAIPARLKVLSESLEELIQCYSP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
E ++EQVF+ + A A LKLG AR AI++ + V+EY+ IK++V+G G DK Q
Sbjct: 62 SELSIEQVFLARSADAALKLGHARGAAIVACVTRGMSVNEYSARQIKQSVVGSGGADKSQ 121
Query: 126 IHMMLKMLMPESFFK 140
+ M+ L+
Sbjct: 122 VQHMVSRLLSLPGVP 136
>gi|148927929|ref|ZP_01811335.1| crossover junction endodeoxyribonuclease RuvC [candidate division
TM7 genomosp. GTL1]
gi|147886718|gb|EDK72282.1| crossover junction endodeoxyribonuclease RuvC [candidate division
TM7 genomosp. GTL1]
Length = 158
Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats.
Identities = 43/138 (31%), Positives = 73/138 (52%), Gaps = 1/138 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RIIGIDPG G+G++D V +G + + V Q L RL ++Y + +I + R
Sbjct: 1 MRIIGIDPGTGILGFGVIDAEQGTTNLVDAGVVRTKVHQPLDERLVEIYGAIQSIIADTR 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P A+E++F ++ + + AR +A+L+ A + + EY P IK+ + G G KK
Sbjct: 61 PTIMAIERLFFAQNVTTAMSVAHARGVAMLAGKQADLAIHEYTPLQIKQTMTGYGRATKK 120
Query: 125 QIHMMLKMLMPE-SFFKG 141
QI M+++ + K
Sbjct: 121 QIQEMVRLQLNLVEVPKP 138
>gi|68536133|ref|YP_250838.1| Holliday junction resolvase [Corynebacterium jeikeium K411]
gi|68263732|emb|CAI37220.1| crossover junction endodeoxyribonuclease [Corynebacterium jeikeium
K411]
Length = 187
Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats.
Identities = 35/137 (25%), Positives = 67/137 (48%), Gaps = 1/137 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCF-VSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R++GIDPGL R G +V + V+ G + + + RL +L++ + ++
Sbjct: 22 LRVMGIDPGLTRCGLSVVQAGKGRAVYPVAVGVVRTPSDMPVEQRLNKLFDAVEQWFDDY 81
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
+P A+E+VF + + A + +L+ A + V Y P+ +KK++ G G DK
Sbjct: 82 QPHVVALERVFERSNVSTVMNTAHASGVLMLAAARRGVDVHMYTPSEVKKSISGNGRADK 141
Query: 124 KQIHMMLKMLMPESFFK 140
Q+ M+ ++ S
Sbjct: 142 AQMTRMITRILGLSEAP 158
>gi|294811585|ref|ZP_06770228.1| Crossover junction endodeoxyribonuclease ruvC [Streptomyces
clavuligerus ATCC 27064]
gi|326440226|ref|ZP_08214960.1| Holliday junction resolvase [Streptomyces clavuligerus ATCC 27064]
gi|294324184|gb|EFG05827.1| Crossover junction endodeoxyribonuclease ruvC [Streptomyces
clavuligerus ATCC 27064]
Length = 202
Score = 134 bits (337), Expect = 4e-30, Method: Composition-based stats.
Identities = 58/157 (36%), Positives = 84/157 (53%), Gaps = 2/157 (1%)
Query: 4 SIRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
+R++G+DPGL R G G+V+ G L + G + S LA RL + +GL +
Sbjct: 1 MVRVLGVDPGLTRCGVGVVEGEAGRPLAMLGVGVVRSSPDADLAGRLVAIEQGLERWLDE 60
Query: 63 WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
+RPE AVE+VF + + QA A+A+L IPV + P+ +K AV G G D
Sbjct: 61 YRPERVAVERVFSQHNVRTVMGTAQASAVAMLCAGRRGIPVVLHTPSEVKAAVTGTGRAD 120
Query: 123 KKQIHMMLKMLMPESFFK-GKDAADALAIAVCHAYHA 158
K Q+ M+ L+ DAADALA+A+CH + A
Sbjct: 121 KAQVGAMVTRLLRLDAPPRPADAADALALAICHIWRA 157
>gi|302206307|gb|ADL10649.1| Crossover junction endodeoxyribonuclease ruvC [Corynebacterium
pseudotuberculosis C231]
gi|308276549|gb|ADO26448.1| Crossover junction endodeoxyribonuclease ruvC [Corynebacterium
pseudotuberculosis I19]
Length = 193
Score = 134 bits (337), Expect = 4e-30, Method: Composition-based stats.
Identities = 49/159 (30%), Positives = 82/159 (51%), Gaps = 2/159 (1%)
Query: 2 RKSIRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
+ +R++GIDPGL R G +V G + ++ G + + L RL +L + + +
Sbjct: 3 TEGLRVMGIDPGLTRCGLSVVQAGRGRQVMPIAVGVVRTPPHADLTVRLLELSDAANEWM 62
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
++P+ A+E++F + + + +L+ A I V Y P+ KKA+ G G
Sbjct: 63 DEYQPDVVAIERIFERGNVSTVMHTAHGVGVLVLAAAQRGIDVHMYTPSEAKKAISGNGR 122
Query: 121 GDKKQIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHA 158
DKKQ+ M+ ++ K DAADALA+AVCH + A
Sbjct: 123 ADKKQMTAMITRILGLSEPPKPADAADALALAVCHCWRA 161
>gi|300781058|ref|ZP_07090912.1| crossover junction endoribonuclease subunit C [Corynebacterium
genitalium ATCC 33030]
gi|300532765|gb|EFK53826.1| crossover junction endoribonuclease subunit C [Corynebacterium
genitalium ATCC 33030]
Length = 181
Score = 134 bits (337), Expect = 5e-30, Method: Composition-based stats.
Identities = 55/156 (35%), Positives = 88/156 (56%), Gaps = 2/156 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R++GIDPGL R G ++ G + V+ G + + LA RL +L + + + I ++
Sbjct: 6 LRVMGIDPGLTRCGLSVIQAGKGRQVIPVAVGVVRTPSDAELAHRLLRLSQAVEEWIDDY 65
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
+P+ A+E++F + + A + +L+ A IPV Y P+ +KKAV G G DK
Sbjct: 66 QPDVIAMERIFERGNVSTVMHTAHAVGVMVLAAAKRDIPVHMYTPSEVKKAVSGNGRADK 125
Query: 124 KQIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHA 158
KQ+ M+ ++ + K DAADALAIAVCH + A
Sbjct: 126 KQMTSMITRILGLGAPPKPADAADALAIAVCHCWRA 161
>gi|121998990|ref|YP_001003777.1| Holliday junction resolvase [Halorhodospira halophila SL1]
gi|166233197|sp|A1WZ63|RUVC_HALHL RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|121590395|gb|ABM62975.1| crossover junction endodeoxyribonuclease RuvC [Halorhodospira
halophila SL1]
Length = 167
Score = 134 bits (337), Expect = 5e-30, Method: Composition-based stats.
Identities = 59/135 (43%), Positives = 85/135 (62%), Gaps = 1/135 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
RI+GIDPG R TG+GIVD G V+ GT+ + LA RL ++++GL ++I RP
Sbjct: 3 RILGIDPGSRVTGYGIVD-DGRPTRLVTEGTLRLPRQAGLAERLGRIFDGLAELIAEHRP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+E A+EQVFV+++A LKLG AR A+ + A +PV+EYAP IK+A+ G G DK Q
Sbjct: 62 QEVALEQVFVHRNADTALKLGHARGAALTACVQAGLPVAEYAPARIKQAIAGSGRADKTQ 121
Query: 126 IHMMLKMLMPESFFK 140
+ M++ L+
Sbjct: 122 VGYMVRALLRLRTSP 136
>gi|148261888|ref|YP_001236015.1| Holliday junction resolvase [Acidiphilium cryptum JF-5]
gi|187611411|sp|A5G2L4|RUVC_ACICJ RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|146403569|gb|ABQ32096.1| crossover junction endodeoxyribonuclease RuvC [Acidiphilium cryptum
JF-5]
Length = 167
Score = 134 bits (337), Expect = 5e-30, Method: Composition-based stats.
Identities = 73/162 (45%), Positives = 108/162 (66%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
RIIGIDPGLR TG+GI++ G+ L V+ G I + ++A RL L L ++ + P
Sbjct: 6 RIIGIDPGLRFTGFGIIEADGNRLRHVADGVIATDGAAAVAERLHTLDAALARLLATYAP 65
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ AAVE+ +VN++A ATLKLG AR +A+L+PA A I V+EY T+K+AV+G G +K Q
Sbjct: 66 DHAAVEETYVNRNATATLKLGYARGVALLAPARAGIAVAEYGAKTVKRAVVGTGAAEKDQ 125
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
+ +M++ L+P + DAADALA+A+CHA+H + A+
Sbjct: 126 VALMVRRLLPGAAITRADAADALAVAICHAHHLATASRVPAA 167
>gi|72162494|ref|YP_290151.1| Holliday junction resolvase [Thermobifida fusca YX]
gi|110287675|sp|Q47N41|RUVC_THEFY RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|71916226|gb|AAZ56128.1| Holliday junction endonuclease RuvC [Thermobifida fusca YX]
Length = 182
Score = 134 bits (337), Expect = 5e-30, Method: Composition-based stats.
Identities = 44/139 (31%), Positives = 75/139 (53%), Gaps = 1/139 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVD-VAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R++GIDPGL R G G+VD G L V++G + + + L RL + +G+ + ++
Sbjct: 1 MRVLGIDPGLTRCGIGVVDGAVGAPLTMVAAGAVRTLADEELPARLLGIEKGIEQWLDDY 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
+P+ AVE+VF + + QA AIA++ A +PVS + P+ +K A+ G G DK
Sbjct: 61 QPDAVAVERVFAQHNVRTVMGTAQASAIAVVCAARRGLPVSLHTPSEVKAAITGSGRADK 120
Query: 124 KQIHMMLKMLMPESFFKGK 142
Q+ M+ ++
Sbjct: 121 AQVGTMVARILRLDSPPRP 139
>gi|50954746|ref|YP_062034.1| Holliday junction resolvase [Leifsonia xyli subsp. xyli str.
CTCB07]
gi|71649497|sp|Q6AFB6|RUVC_LEIXX RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|50951228|gb|AAT88929.1| holliday juction resolvase [Leifsonia xyli subsp. xyli str. CTCB07]
Length = 208
Score = 134 bits (337), Expect = 5e-30, Method: Composition-based stats.
Identities = 40/136 (29%), Positives = 69/136 (50%), Gaps = 1/136 (0%)
Query: 4 SIRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
+IR++GIDPGL R G G+VDV V I + L RL + +G+ ++
Sbjct: 2 TIRVLGIDPGLTRCGVGVVDVRRDRRATLVEVTVIRTPAEMPLEQRLLAVGDGIAALLDR 61
Query: 63 WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
+ P A+E+VF + + + Q +A+ + A +PV+ + P+ +K A+ G G D
Sbjct: 62 YSPAAVAIERVFAQHNLRTVIGVAQVSGVALHTAAQRGLPVALHTPSEVKAAITGYGSAD 121
Query: 123 KKQIHMMLKMLMPESF 138
KKQ+ M+ ++
Sbjct: 122 KKQVQAMVARVLGLPE 137
>gi|126658545|ref|ZP_01729692.1| Holliday juction resolvase; RuvC [Cyanothece sp. CCY0110]
gi|126620132|gb|EAZ90854.1| Holliday juction resolvase; RuvC [Cyanothece sp. CCY0110]
Length = 162
Score = 134 bits (337), Expect = 6e-30, Method: Composition-based stats.
Identities = 39/147 (26%), Positives = 65/147 (44%), Gaps = 1/147 (0%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFV-SSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
+GIDPGL GW I+ + L + GTI + + S + RL ++ E L +++ ++P
Sbjct: 6 WLGIDPGLAIVGWAILQESEQQLPLIIDYGTIETNKQLSTSQRLLEIEEDLGELLTEFKP 65
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+E F N+ A + Q + L + K +G G KK+
Sbjct: 66 QGIAIEMPFFNRTIKAAGGVMQGLGVINLVCYREAKIEPIFLHQASWKCHLGNGKAKKKE 125
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAV 152
+ M+ L D+ DA+AIA
Sbjct: 126 VAEMIATLFNLDKLPIDDSVDAIAIAY 152
>gi|300858595|ref|YP_003783578.1| crossover junction endodeoxyribonuclease [Corynebacterium
pseudotuberculosis FRC41]
gi|300686049|gb|ADK28971.1| crossover junction endodeoxyribonuclease [Corynebacterium
pseudotuberculosis FRC41]
gi|302330864|gb|ADL21058.1| Crossover junction endodeoxyribonuclease ruvC [Corynebacterium
pseudotuberculosis 1002]
Length = 193
Score = 134 bits (337), Expect = 6e-30, Method: Composition-based stats.
Identities = 49/159 (30%), Positives = 82/159 (51%), Gaps = 2/159 (1%)
Query: 2 RKSIRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
+ +R++GIDPGL R G +V G + ++ G + + L RL +L + + +
Sbjct: 3 TEGLRVMGIDPGLTRCGLSVVQAGRGRQVMPIAVGVVRTPPHADLTVRLLELSDTANEWM 62
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
++P+ A+E++F + + + +L+ A I V Y P+ KKA+ G G
Sbjct: 63 DEYQPDVVAIERIFERGNVSTVMHTAHGVGVLVLAAAQRGIDVHMYTPSEAKKAISGNGR 122
Query: 121 GDKKQIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHA 158
DKKQ+ M+ ++ K DAADALA+AVCH + A
Sbjct: 123 ADKKQMTAMITRILGLSEPPKPADAADALALAVCHCWRA 161
>gi|319442166|ref|ZP_07991322.1| Holliday junction resolvase [Corynebacterium variabile DSM 44702]
Length = 185
Score = 133 bits (336), Expect = 6e-30, Method: Composition-based stats.
Identities = 42/139 (30%), Positives = 68/139 (48%), Gaps = 1/139 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCF-VSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R++GIDPGL R G +V V+ G + + L RL +L + + + ++
Sbjct: 4 LRVMGIDPGLTRCGLSVVQAGHGRAVLPVAVGVVRTPHEIPLQERLLRLSVAVEEWMDDY 63
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
PE A+E+VF + + A + +LS A IPV +Y P+ KKA+ G G DK
Sbjct: 64 SPEVVAIERVFERGNVSTVMNTAHAVGVLMLSAARRGIPVHQYTPSEAKKALTGNGRADK 123
Query: 124 KQIHMMLKMLMPESFFKGK 142
KQ+ M+ ++ S
Sbjct: 124 KQMTSMVTRILGLSEPPRP 142
>gi|118473848|ref|YP_887262.1| Holliday junction resolvase [Mycobacterium smegmatis str. MC2 155]
gi|166233270|sp|A0QWH4|RUVC_MYCS2 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|118175135|gb|ABK76031.1| crossover junction endodeoxyribonuclease RuvC [Mycobacterium
smegmatis str. MC2 155]
Length = 185
Score = 133 bits (336), Expect = 6e-30, Method: Composition-based stats.
Identities = 47/156 (30%), Positives = 79/156 (50%), Gaps = 2/156 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R++G+DPGL R G +++ G + + + + L RL + + +
Sbjct: 1 MRVMGVDPGLTRCGLSMIESGKGRQVIALDVDVVRTPADTPLQKRLLTISDAAEHWMDTH 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
RP+ A+E+VF N++A + QA + L+ A I V + P+ +K AV G G DK
Sbjct: 61 RPDVIAIERVFANQNANTAMGTAQAGGVIALAAAKRDIEVHFHTPSEVKAAVTGSGRADK 120
Query: 124 KQIHMMLKMLMPES-FFKGKDAADALAIAVCHAYHA 158
Q+ M+ ++ DAADALA+A+CH + A
Sbjct: 121 SQVTEMVTRILALQAKPTPADAADALALAICHCWRA 156
>gi|323143600|ref|ZP_08078277.1| crossover junction endodeoxyribonuclease RuvC [Succinatimonas
hippei YIT 12066]
gi|322416663|gb|EFY07320.1| crossover junction endodeoxyribonuclease RuvC [Succinatimonas
hippei YIT 12066]
Length = 177
Score = 133 bits (336), Expect = 6e-30, Method: Composition-based stats.
Identities = 56/153 (36%), Positives = 95/153 (62%), Gaps = 1/153 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R+TG+G++ + G L ++ SG I + L RL ++ ++ +I+ + P
Sbjct: 4 IILGIDPGSRKTGYGVIKIQGSALVYLGSGCINAGSGA-LYKRLQTIFVAVSTIIEQFSP 62
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
A+E+ F++K+ +T+KL +ARA A+++ + A + + EY P IK+AV+G G K Q
Sbjct: 63 TVFAIEETFLSKNVQSTVKLSEARAAAMIAGSNAGLEIFEYTPRQIKQAVVGYGAAQKHQ 122
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHA 158
+ M++ ++ S DAADALA A+CH Y +
Sbjct: 123 VQYMVERILKLSGTPQADAADALACAICHGYTS 155
>gi|297170982|gb|ADI21997.1| holliday junction resolvasome, endonuclease subunit [uncultured
myxobacterium HF0200_01L06]
Length = 181
Score = 133 bits (336), Expect = 6e-30, Method: Composition-based stats.
Identities = 54/136 (39%), Positives = 77/136 (56%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RIIGIDPG TGWG+V++ + V+ GT+ SLA RL L+ GL DVI+
Sbjct: 1 MRIIGIDPGSVATGWGLVEIVEGRMRHVAHGTVRPPRGGSLASRLAFLHRGLLDVIERNE 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ A VE+VFV+++ + L LG AR A+ + I V E + IK+AV+G G K
Sbjct: 61 PDRAVVERVFVSRNPRSALVLGHARGTALAALGGFSIGVEELSAREIKQAVVGTGSASKS 120
Query: 125 QIHMMLKMLMPESFFK 140
Q+ M+K L+
Sbjct: 121 QVQGMVKKLLDLEAKP 136
>gi|325963420|ref|YP_004241326.1| Holliday junction endonuclease RuvC [Arthrobacter
phenanthrenivorans Sphe3]
gi|323469507|gb|ADX73192.1| Holliday junction endonuclease RuvC [Arthrobacter
phenanthrenivorans Sphe3]
Length = 192
Score = 133 bits (336), Expect = 7e-30, Method: Composition-based stats.
Identities = 51/162 (31%), Positives = 86/162 (53%), Gaps = 2/162 (1%)
Query: 4 SIRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
++R++G+DPGL R G G+VDV V+ G + + +SL RL + + + +
Sbjct: 2 TLRVLGVDPGLTRCGIGVVDVERNRRATMVAVGVVGTSPEESLDQRLLLIACSIDEWLDR 61
Query: 63 WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
+ P+ AVE+VF + + + QA + I + A IPV+ + P+ +K AV G G +
Sbjct: 62 YEPQVLAVERVFSQLNVSTVMGVAQASGVVIAAAARRGIPVALHTPSEVKAAVTGSGSSN 121
Query: 123 KKQIHMMLKMLMPESFFK-GKDAADALAIAVCHAYHANSGYY 163
K + ++ ++ DAADALA+A+ HA+ A SG
Sbjct: 122 KDAVTKLVTKILRLDAPPRPADAADALALAITHAWRAGSGAA 163
>gi|254418020|ref|ZP_05031744.1| crossover junction endodeoxyribonuclease RuvC [Brevundimonas sp.
BAL3]
gi|196184197|gb|EDX79173.1| crossover junction endodeoxyribonuclease RuvC [Brevundimonas sp.
BAL3]
Length = 172
Score = 133 bits (336), Expect = 7e-30, Method: Composition-based stats.
Identities = 65/134 (48%), Positives = 88/134 (65%)
Query: 2 RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
+ +RIIG+DPGLRRTGWG++ G L +V+ G + + RL L+E L +
Sbjct: 3 NEPVRIIGLDPGLRRTGWGVIVSDGARLRWVAHGVVAPPEAAPFSERLLFLFEALGTICA 62
Query: 62 NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
+ EEAAVE+VFVN + +TLKLG ARA +L+PA + V+EY+PN IKKAV+G GH
Sbjct: 63 DHGCEEAAVEEVFVNVNPSSTLKLGHARAAVMLAPAKLGLAVAEYSPNLIKKAVVGAGHA 122
Query: 122 DKKQIHMMLKMLMP 135
DK QI M+K L+P
Sbjct: 123 DKSQIAFMIKRLLP 136
>gi|192362195|ref|YP_001981525.1| Holliday junction resolvase [Cellvibrio japonicus Ueda107]
gi|190688360|gb|ACE86038.1| crossover junction endodeoxyribonuclease RuvC [Cellvibrio japonicus
Ueda107]
Length = 196
Score = 133 bits (336), Expect = 7e-30, Method: Composition-based stats.
Identities = 68/162 (41%), Positives = 102/162 (62%), Gaps = 1/162 (0%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
I+GIDPG R+TG+GI+++ G +V+SG I L RL +++ LT +I+ + P+
Sbjct: 27 ILGIDPGSRKTGFGIINLLGGKSEYVTSGVIRMRDDDELPVRLKVIFDSLTQIIERYTPQ 86
Query: 67 EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
E A+EQVF+ K+A + LKLGQAR AI++ A +PVSEY +K++V+G G DK Q+
Sbjct: 87 EMAIEQVFMAKNAASALKLGQARGAAIVAAAAQNLPVSEYEARKVKQSVVGNGAADKLQV 146
Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
M+K L+ +DAADALA+A+CHA ++A
Sbjct: 147 QHMVKTLLRLPAAPQEDAADALAVALCHANT-QQHLIRMAGS 187
>gi|308235708|ref|ZP_07666445.1| Holliday junction resolvase [Gardnerella vaginalis ATCC 14018]
gi|311114742|ref|YP_003985963.1| crossover junction endoribonuclease subunit C [Gardnerella
vaginalis ATCC 14019]
gi|310946236|gb|ADP38940.1| crossover junction endoribonuclease subunit C [Gardnerella
vaginalis ATCC 14019]
Length = 193
Score = 133 bits (336), Expect = 7e-30, Method: Composition-based stats.
Identities = 42/139 (30%), Positives = 72/139 (51%), Gaps = 1/139 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+ I+G+DPGL R G G+++ L F+ + S + S RL ++Y GL + I+ +
Sbjct: 1 MMILGVDPGLTRCGVGVIEAGVSRRLSFIHVDVLRSDPKTSQDLRLLEIYNGLVEKIERF 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
P+ ++E+VF ++ L Q +A+L+ A IPV+ + P +K AV G G DK
Sbjct: 61 SPDTISIERVFAQENRNTVLGTAQVAGVAMLAAAQRSIPVALHTPTEVKLAVAGNGKADK 120
Query: 124 KQIHMMLKMLMPESFFKGK 142
Q+ M+ L+ +
Sbjct: 121 TQVERMVARLLNLNVLPTP 139
>gi|254797272|ref|YP_003082114.1| crossover junction endodeoxyribonuclease RuvC [Neorickettsia
risticii str. Illinois]
gi|254590513|gb|ACT69875.1| crossover junction endodeoxyribonuclease RuvC [Neorickettsia
risticii str. Illinois]
Length = 166
Score = 133 bits (335), Expect = 7e-30, Method: Composition-based stats.
Identities = 52/147 (35%), Positives = 87/147 (59%), Gaps = 3/147 (2%)
Query: 8 IGIDPGLRRTGWGIVDVAGD-NLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
+G+DPGL RTGW +V+ G ++ ++ SG + + ++L RL +++ G++DVI+ P
Sbjct: 6 LGVDPGLIRTGWAVVEYDGPCDVRYIDSGVVKTASHENLFSRLEKIHRGISDVIERVNPS 65
Query: 67 EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
A +E+VFVN + ++L L R IL+ AL + + E+AP+ +KK + G G K Q+
Sbjct: 66 IAVLEKVFVNSNPYSSLNLAYCRGALILTLALKGLFIVEFAPSVLKKRITGNGRATKAQV 125
Query: 127 HMMLKMLMPESF--FKGKDAADALAIA 151
M++ L+ K D DALA+A
Sbjct: 126 KYMVEQLLGLDPCLSKYSDLYDALALA 152
>gi|326405392|ref|YP_004285474.1| crossover junction endodeoxyribonuclease RuvC [Acidiphilium
multivorum AIU301]
gi|325052254|dbj|BAJ82592.1| crossover junction endodeoxyribonuclease RuvC [Acidiphilium
multivorum AIU301]
Length = 169
Score = 133 bits (335), Expect = 8e-30, Method: Composition-based stats.
Identities = 74/162 (45%), Positives = 108/162 (66%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
RIIGIDPGLR TG+GI+D G+ L V+ G I + ++A RL L L ++ + P
Sbjct: 8 RIIGIDPGLRFTGFGIIDADGNRLRHVADGVIATDGAAAVAERLHTLDAALARLLATYAP 67
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ AAVE+ +VN++A ATLKLG AR +A+L+PA A I V+EY T+K+AV+G G +K Q
Sbjct: 68 DHAAVEETYVNRNATATLKLGYARGVALLAPARAGIAVAEYGAKTVKRAVVGTGAAEKDQ 127
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
+ +M++ L+P + DAADALA+A+CHA+H + A+
Sbjct: 128 VALMVRRLLPGAAITRADAADALAVAICHAHHLATASRVPAA 169
>gi|89053455|ref|YP_508906.1| Holliday junction resolvase [Jannaschia sp. CCS1]
gi|88863004|gb|ABD53881.1| crossover junction endodeoxyribonuclease RuvC [Jannaschia sp. CCS1]
Length = 191
Score = 133 bits (335), Expect = 8e-30, Method: Composition-based stats.
Identities = 81/167 (48%), Positives = 112/167 (67%), Gaps = 2/167 (1%)
Query: 2 RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
R +RIIGIDPGLR GWG+++ +G L V++G + R + RL L+ L+ ++
Sbjct: 22 RAVMRIIGIDPGLRSLGWGVIEASGGRLSHVANGQCKTEGR-DVPLRLLSLHTQLSAIVA 80
Query: 62 NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
+ P+ AAVEQ FVN+D TLKLGQAR IA+L PA A + V EYAPN +KKAV+GVGH
Sbjct: 81 RYAPDAAAVEQTFVNRDGAGTLKLGQARGIAVLVPAQAGLDVGEYAPNAVKKAVVGVGHA 140
Query: 122 DKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
DK Q+ M+K+ +P G DAADALAIA+CH++H + ++A+
Sbjct: 141 DKTQVEHMVKLQLPGCAPVGPDAADALAIAICHSFHVATA-GRLAAA 186
>gi|145295782|ref|YP_001138603.1| Holliday junction resolvase [Corynebacterium glutamicum R]
gi|140845702|dbj|BAF54701.1| hypothetical protein [Corynebacterium glutamicum R]
Length = 242
Score = 133 bits (335), Expect = 8e-30, Method: Composition-based stats.
Identities = 53/156 (33%), Positives = 85/156 (54%), Gaps = 2/156 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCF-VSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R++GIDPGL R G +V + VS G + + LA RL +L + + + + +
Sbjct: 27 LRVMGIDPGLTRCGLSVVQAGRGRTVYPVSVGVVRTPPDAELAERLLRLSKAVGEWMDEY 86
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
P+ A+E+VF + + A + IL+ A +PV Y P+ +KKA+ G G DK
Sbjct: 87 TPDVVAIERVFERGNVSTVMNTAHAVGVLILAAAERGLPVHMYTPSEVKKAISGNGRADK 146
Query: 124 KQIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHA 158
KQ+ +M+ ++ K DAADAL++AVCH + A
Sbjct: 147 KQMTVMITRILGLGEPPKPADAADALSLAVCHCWRA 182
>gi|23308862|ref|NP_600874.2| Holliday junction resolvase [Corynebacterium glutamicum ATCC 13032]
gi|24638206|sp|Q9AE11|RUVC_CORGL RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|13346822|gb|AAK19838.1|AF331924_3 crossover junction endodeoxyribonuclease RuvC [Corynebacterium
glutamicum]
gi|21324431|dbj|BAB99055.1| Holliday junction resolvasome endonuclease subunit [Corynebacterium
glutamicum ATCC 13032]
Length = 221
Score = 133 bits (335), Expect = 8e-30, Method: Composition-based stats.
Identities = 53/156 (33%), Positives = 85/156 (54%), Gaps = 2/156 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCF-VSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R++GIDPGL R G +V + VS G + + LA RL +L + + + + +
Sbjct: 6 LRVMGIDPGLTRCGLSVVQAGRGRTVYPVSVGVVRTPPDAELAERLLRLSKAVGEWMDEY 65
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
P+ A+E+VF + + A + IL+ A +PV Y P+ +KKA+ G G DK
Sbjct: 66 TPDVIAIERVFERGNVSTVMNTAHAVGVLILAAAERGLPVHMYTPSEVKKAISGNGRADK 125
Query: 124 KQIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHA 158
KQ+ +M+ ++ K DAADAL++AVCH + A
Sbjct: 126 KQMTVMITRILGLGEPPKPADAADALSLAVCHCWRA 161
>gi|317508677|ref|ZP_07966332.1| crossover junction endodeoxyribonuclease RuvC [Segniliparus rugosus
ATCC BAA-974]
gi|316252998|gb|EFV12413.1| crossover junction endodeoxyribonuclease RuvC [Segniliparus rugosus
ATCC BAA-974]
Length = 189
Score = 133 bits (335), Expect = 8e-30, Method: Composition-based stats.
Identities = 40/136 (29%), Positives = 67/136 (49%), Gaps = 1/136 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R++GIDPGL R G +V+ AG + + + + SL RL ++ + + + +
Sbjct: 1 MRVMGIDPGLTRCGLALVEAGAGRKVTALDVDVCRTSPQDSLQHRLSRIADEVEHWLDSH 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
RP+ AVEQVF + + + Q + L A IPV + P+ +K AV G G DK
Sbjct: 61 RPDVVAVEQVFAQHNVRTVMGVAQVSGVVALLAARRSIPVRTHTPSEVKAAVTGNGRADK 120
Query: 124 KQIHMMLKMLMPESFF 139
Q+ M+ ++
Sbjct: 121 DQVTAMVTRILGLKVK 136
>gi|254448977|ref|ZP_05062431.1| crossover junction endodeoxyribonuclease RuvC [gamma
proteobacterium HTCC5015]
gi|198261371|gb|EDY85662.1| crossover junction endodeoxyribonuclease RuvC [gamma
proteobacterium HTCC5015]
Length = 194
Score = 133 bits (335), Expect = 8e-30, Method: Composition-based stats.
Identities = 52/137 (37%), Positives = 82/137 (59%), Gaps = 1/137 (0%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M ++ RI+GIDPG G G+V+VA + + + + L RL + E + VI
Sbjct: 1 MAETRRILGIDPGSVTMGLGVVEVASSRQAHLYHAAVKTGGGE-LPKRLGVIVEAVAQVI 59
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
W+P+E A+E+VFV+ +A++ LKLGQAR AI + A++PVSEY+ +K++V+G G
Sbjct: 60 VEWQPDEVAIEEVFVSANAMSALKLGQARGAAICAAVQAQLPVSEYSARQVKQSVVGTGA 119
Query: 121 GDKKQIHMMLKMLMPES 137
K Q+ M+K L+
Sbjct: 120 ASKDQVQHMVKALLQLE 136
>gi|110679368|ref|YP_682375.1| Holliday junction resolvase [Roseobacter denitrificans OCh 114]
gi|109455484|gb|ABG31689.1| crossover junction endodeoxyribonuclease RuvC [Roseobacter
denitrificans OCh 114]
Length = 187
Score = 133 bits (335), Expect = 8e-30, Method: Composition-based stats.
Identities = 70/142 (49%), Positives = 94/142 (66%), Gaps = 2/142 (1%)
Query: 2 RKSI-RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
S+ R+IGIDPGLR GWG+++V+G + +++G LA RL L++ LT V+
Sbjct: 17 TASMTRVIGIDPGLRNLGWGVIEVSGSRIAHIANGVC-VSGGSDLADRLLSLHQQLTAVV 75
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
+ P+EAAVEQ FVNKD TLKLGQAR IA+L PA A + V EYAPN IKK V+GVGH
Sbjct: 76 STFAPDEAAVEQTFVNKDGAGTLKLGQARGIAMLVPAQAGLRVGEYAPNKIKKTVVGVGH 135
Query: 121 GDKKQIHMMLKMLMPESFFKGK 142
DK Q+ M+++ +P + K
Sbjct: 136 ADKAQVLHMVRLQLPGAEIKSP 157
>gi|296129640|ref|YP_003636890.1| crossover junction endodeoxyribonuclease RuvC [Cellulomonas
flavigena DSM 20109]
gi|296021455|gb|ADG74691.1| crossover junction endodeoxyribonuclease RuvC [Cellulomonas
flavigena DSM 20109]
Length = 188
Score = 133 bits (335), Expect = 9e-30, Method: Composition-based stats.
Identities = 50/155 (32%), Positives = 82/155 (52%), Gaps = 2/155 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVD-VAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R++G+DPGL R G G+VD + G V S + RL + L + ++
Sbjct: 1 MRVLGVDPGLTRCGLGVVDGLPGRRARLVHVSVARSEPGLDVDQRLLLIERALEECLEEH 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
P+ AVE+VF + + Q +A+++ A R+PV+ + P+ +K AV G G DK
Sbjct: 61 APDAVAVERVFAQHNVSTVMGTAQVAGLAMVAAARRRVPVALHTPSEVKAAVTGSGRADK 120
Query: 124 KQIHMMLKMLMPESF-FKGKDAADALAIAVCHAYH 157
Q+ M+ L+ + + DAADALA+A+CH +
Sbjct: 121 AQVQTMVARLLGLADLPRPADAADALALAICHLWR 155
>gi|148272997|ref|YP_001222558.1| Holliday junction resolvase [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
gi|167012677|sp|A5CS08|RUVC_CLAM3 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|147830927|emb|CAN01871.1| crossover junction endodeoxyribonuclease [Clavibacter michiganensis
subsp. michiganensis NCPPB 382]
Length = 202
Score = 133 bits (335), Expect = 9e-30, Method: Composition-based stats.
Identities = 52/165 (31%), Positives = 86/165 (52%), Gaps = 2/165 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+RI+GIDPGL R G G+VDV A + V + + L RL + +G+ ++++
Sbjct: 1 MRILGIDPGLTRCGVGVVDVYADRSARLVDVQVVRTSPTAELHHRLLAVGDGIEELVERH 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
RP A+E+VF + + + Q +A++ A + V+ + P+ +K AV G G DK
Sbjct: 61 RPSVVAIERVFAQDNLSTVMGVAQITGVALVGAARRGLDVALHTPSEVKAAVTGYGQADK 120
Query: 124 KQIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
KQ+ M+ ++ DA+DALA+A+C + A IA
Sbjct: 121 KQVATMVARILGLDELPTPADASDALALAICAGWRAGMSRAGIAG 165
>gi|221194795|ref|ZP_03567852.1| crossover junction endodeoxyribonuclease RuvC [Atopobium rimae ATCC
49626]
gi|221185699|gb|EEE18089.1| crossover junction endodeoxyribonuclease RuvC [Atopobium rimae ATCC
49626]
Length = 167
Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats.
Identities = 43/139 (30%), Positives = 77/139 (55%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ I+G+DPGL TGWGIV+ G + G + + + + RL ++Y+ L+ VI+ +
Sbjct: 1 MVILGVDPGLAHTGWGIVETRGSVCRARAYGCVETKAHEPIDMRLGRIYDELSRVIQKYE 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P ++E ++ ++ + + QAR AI++ + A + V EY P IK+AV+G G DK
Sbjct: 61 PTALSIEGIYFGQNVRSAIPTAQARGAAIVACSKAGLTVGEYTPMQIKQAVVGTGSADKA 120
Query: 125 QIHMMLKMLMPESFFKGKD 143
Q+ M++ ++ D
Sbjct: 121 QVMYMIRSVLALDHEPHPD 139
>gi|241767727|ref|ZP_04765346.1| crossover junction endodeoxyribonuclease RuvC [Acidovorax
delafieldii 2AN]
gi|241361285|gb|EER57852.1| crossover junction endodeoxyribonuclease RuvC [Acidovorax
delafieldii 2AN]
Length = 126
Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats.
Identities = 55/126 (43%), Positives = 80/126 (63%), Gaps = 2/126 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQ--SLAFRLCQLYEGLTDVIKN 62
+RI+GIDPGL+ TG+G++DV G L +V+SGTI + L RL L++G+++V
Sbjct: 1 MRILGIDPGLQTTGFGLIDVDGHRLSYVASGTIRTTALALGDLPGRLKVLFDGISEVAAR 60
Query: 63 WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
+ P+ A VE VFVN + +TL LGQAR AI + + +PV+EY +KKAV+G G
Sbjct: 61 YEPDVATVEIVFVNVNPQSTLLLGQARGAAITALVASNLPVAEYTALQMKKAVVGHGRAA 120
Query: 123 KKQIHM 128
K Q+
Sbjct: 121 KAQVQE 126
>gi|213018929|ref|ZP_03334737.1| crossover junction endodeoxyribonuclease RuvC [Wolbachia
endosymbiont of Culex quinquefasciatus JHB]
gi|212995880|gb|EEB56520.1| crossover junction endodeoxyribonuclease RuvC [Wolbachia
endosymbiont of Culex quinquefasciatus JHB]
Length = 155
Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats.
Identities = 65/153 (42%), Positives = 93/153 (60%), Gaps = 1/153 (0%)
Query: 16 RTGWGIVD-VAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVF 74
+TGW I+ +N+ F+ GTI + + + RL ++E L VI + P EAAVE++F
Sbjct: 3 KTGWAIIRLEEKNNIKFLGGGTISTDGKLGVGERLHIIFEQLKKVIFLYSPNEAAVEKIF 62
Query: 75 VNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLM 134
+NK+ ++L LG ARAIAIL + +P++EY N IKK++ G GH DK QI M+K ++
Sbjct: 63 INKNPKSSLTLGYARAIAILILRMTDLPMNEYDANYIKKSITGNGHADKGQIIFMVKQIV 122
Query: 135 PESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
S K ADALA A+CHAY N + I S
Sbjct: 123 KSSNIKCHHTADALATAICHAYTKNFCFMGIGS 155
>gi|170781147|ref|YP_001709479.1| Holliday junction resolvase [Clavibacter michiganensis subsp.
sepedonicus]
gi|189046061|sp|B0REB8|RUVC_CLAMS RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|169155715|emb|CAQ00836.1| crossover junction endodeoxyribonuclease RuvC [Clavibacter
michiganensis subsp. sepedonicus]
Length = 204
Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats.
Identities = 52/165 (31%), Positives = 85/165 (51%), Gaps = 2/165 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+RI+GIDPGL R G G+VDV A + V + + L RL + +G+ +++
Sbjct: 1 MRILGIDPGLTRCGVGVVDVYADRSARLVDVQVVRTSPTAELHHRLLAVGDGIEELVDRH 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
RP AVE+VF + + + Q +A++ A + V+ + P+ +K AV G G DK
Sbjct: 61 RPSVVAVERVFAQDNLSTVMGVAQITGVALVGAARRGLDVALHTPSEVKAAVTGYGQADK 120
Query: 124 KQIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
+Q+ M+ ++ DA+DALA+A+C + A IA
Sbjct: 121 RQVATMVARILGLDELPTPADASDALALAICAGWRAGMSRAGIAG 165
>gi|90417109|ref|ZP_01225037.1| crossover junction endodeoxyribonuclease RuvC [marine gamma
proteobacterium HTCC2207]
gi|90331125|gb|EAS46381.1| crossover junction endodeoxyribonuclease RuvC [marine gamma
proteobacterium HTCC2207]
Length = 171
Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats.
Identities = 59/132 (44%), Positives = 84/132 (63%), Gaps = 1/132 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
RIIGIDPG RRTG+GIVD + +V+SG I SL RL ++ G+ +I+ + P
Sbjct: 3 RIIGIDPGSRRTGYGIVDAVAGKVSYVTSGIIRLPEG-SLPERLKIIFNGVGQLIEQYAP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
EE +E+VF++ +A + LKLGQAR AI++ A + V EY+ +IK AV+G G DK Q
Sbjct: 62 EEMGIEEVFLSHNASSALKLGQARGAAIVAGVNAGLSVGEYSARSIKLAVVGTGGADKSQ 121
Query: 126 IHMMLKMLMPES 137
+ MM+ L+ S
Sbjct: 122 VQMMIMQLLKLS 133
>gi|116670850|ref|YP_831783.1| Holliday junction resolvase [Arthrobacter sp. FB24]
gi|166231578|sp|A0JXB3|RUVC_ARTS2 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|116610959|gb|ABK03683.1| Holliday junction endonuclease RuvC [Arthrobacter sp. FB24]
Length = 192
Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats.
Identities = 52/162 (32%), Positives = 86/162 (53%), Gaps = 2/162 (1%)
Query: 4 SIRIIGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
++R++G+DPGL R G G+VDV + V+ G + + +SL RL + + D +
Sbjct: 2 TLRVLGVDPGLTRCGIGVVDVEKNRRATMVAVGVVGTSPDESLDQRLLLIATSIDDWLDR 61
Query: 63 WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
+ P AVE+VF + + + QA + I + A IPV+ + P+ +K AV G G +
Sbjct: 62 YEPHVLAVERVFSQLNVSTVMGVAQASGVVIAAAARRGIPVALHTPSEVKAAVTGSGTSN 121
Query: 123 KKQIHMMLKMLMPESFFK-GKDAADALAIAVCHAYHANSGYY 163
K + ++ ++ DAADALA+A+ HA+ A SG
Sbjct: 122 KDAVTKLVTKILRLDAPPRPADAADALALAITHAWRAGSGAA 163
>gi|163733513|ref|ZP_02140956.1| crossover junction endodeoxyribonuclease RuvC [Roseobacter
litoralis Och 149]
gi|161393301|gb|EDQ17627.1| crossover junction endodeoxyribonuclease RuvC [Roseobacter
litoralis Och 149]
Length = 168
Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats.
Identities = 70/137 (51%), Positives = 93/137 (67%), Gaps = 1/137 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
R+IGIDPGLR GWG+++++G + V++G V L+ RL L+E LT V+ + P
Sbjct: 3 RVIGIDPGLRNLGWGVIELSGSRIAHVANGVC-VSVGTELSDRLLSLHEQLTAVVLKFAP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+EAAVEQ FVNKD TLKLGQAR IA+L PA A + V EYAPN IKK V+GVGH DK Q
Sbjct: 62 DEAAVEQTFVNKDGAGTLKLGQARGIAMLVPAQAGLRVGEYAPNKIKKTVVGVGHADKGQ 121
Query: 126 IHMMLKMLMPESFFKGK 142
+ M+++ +P + K
Sbjct: 122 VLHMVRLQLPGAEIKSP 138
>gi|111221573|ref|YP_712367.1| Holliday junction resolvase [Frankia alni ACN14a]
gi|122954409|sp|Q0RNU8|RUVC_FRAAA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|111149105|emb|CAJ60788.1| Crossover junction endodeoxyribonuclease ruvC (Holliday junction
nuclease ruvC) (Holliday juction resolvase ruvC)
[Frankia alni ACN14a]
Length = 197
Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 46/139 (33%), Positives = 72/139 (51%), Gaps = 1/139 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R++G+DPGL R G G+VD A G V +G + + +A RL + +G+ +
Sbjct: 1 MRVLGVDPGLTRCGLGVVDGALGSRARLVEAGVVRTPAGAEVADRLRAVADGIDAWLDRT 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
RP+ AVE+VF + + QA A+AI+ A +PV Y P+ +K AV G G DK
Sbjct: 61 RPDAVAVEKVFSQANVRTVMGTAQAGAVAIMLAARRDLPVGLYTPSEVKAAVTGSGRADK 120
Query: 124 KQIHMMLKMLMPESFFKGK 142
Q+ M+ L+ +
Sbjct: 121 AQVGFMVTRLLGLAEVPRP 139
>gi|294101863|ref|YP_003553721.1| crossover junction endodeoxyribonuclease RuvC [Aminobacterium
colombiense DSM 12261]
gi|293616843|gb|ADE56997.1| crossover junction endodeoxyribonuclease RuvC [Aminobacterium
colombiense DSM 12261]
Length = 174
Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 42/133 (31%), Positives = 69/133 (51%)
Query: 8 IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEE 67
IGIDPGL R G+ +V G + G I + + ++ RL +Y L + I+ P+
Sbjct: 10 IGIDPGLGRLGFALVRKEGHSFFAEEFGCIETPAKTDISLRLEMIYNKLGERIQCCSPDF 69
Query: 68 AAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIH 127
+VE++F ++ + QAR I +L + ++PV E P+ IK AV G G DKKQ+
Sbjct: 70 MSVEKLFFGRNTTTAEYVWQARGIVLLLASQYKLPVYEPKPSQIKVAVCGFGSADKKQVQ 129
Query: 128 MMLKMLMPESFFK 140
M++ ++
Sbjct: 130 RMVQRMLNLKEIP 142
>gi|254487410|ref|ZP_05100615.1| crossover junction endodeoxyribonuclease RuvC [Roseobacter sp.
GAI101]
gi|214044279|gb|EEB84917.1| crossover junction endodeoxyribonuclease RuvC [Roseobacter sp.
GAI101]
Length = 168
Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 90/165 (54%), Positives = 109/165 (66%), Gaps = 1/165 (0%)
Query: 4 SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
IR+IGIDPGLR GWGI+DVAG L V++G L RL L+ LT +IK +
Sbjct: 1 MIRVIGIDPGLRNMGWGIIDVAGSRLSHVANGVC-VSEGPDLGSRLLSLHGQLTRIIKTY 59
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
P+ AAVEQ FVNKD TLKLGQAR IA+L PA A + V EYAPNT+KK V+GVGH DK
Sbjct: 60 HPQAAAVEQTFVNKDGAGTLKLGQARGIAMLVPAQAGLAVGEYAPNTVKKTVVGVGHADK 119
Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
Q+ M+KM +P + G DAADALAIA+CHA+H + A
Sbjct: 120 GQVLHMVKMQLPGAEIVGPDAADALAIAICHAHHGGASTLAQAVA 164
>gi|292490334|ref|YP_003525773.1| crossover junction endodeoxyribonuclease RuvC [Nitrosococcus
halophilus Nc4]
gi|291578929|gb|ADE13386.1| crossover junction endodeoxyribonuclease RuvC [Nitrosococcus
halophilus Nc4]
Length = 174
Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 52/137 (37%), Positives = 87/137 (63%), Gaps = 1/137 (0%)
Query: 4 SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+RI+GIDPG R TG+G+++ G ++++G I LA RL ++++G+T +I+++
Sbjct: 1 MVRILGIDPGSRITGYGLIETNGKEAAYITAGCIQ-AGNGELAERLGRIFKGITAIIEDY 59
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
P+E AVEQVF++++ A LKLG AR AI + +PV EY P+ +K+AV+G G K
Sbjct: 60 HPDEVAVEQVFMHQNPGAALKLGHARGAAICAAMNVVLPVFEYTPSQVKQAVVGRGDAAK 119
Query: 124 KQIHMMLKMLMPESFFK 140
Q+ M+++L+
Sbjct: 120 SQVQYMIRLLLKLPSEP 136
>gi|149184937|ref|ZP_01863254.1| Holliday junction resolvase [Erythrobacter sp. SD-21]
gi|148831048|gb|EDL49482.1| Holliday junction resolvase [Erythrobacter sp. SD-21]
Length = 160
Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 53/135 (39%), Positives = 80/135 (59%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ I+G+DP L TGWG++ G + +++G + + + +A RL L L VI R
Sbjct: 1 MIILGLDPSLSCTGWGVIRAEGSRIAHIANGQVPTDAKAPMARRLSHLQTALEAVIAEHR 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ AA E+VFVNK+ +TLKL QAR + + A + V+E+A +KKAV+G G DK
Sbjct: 61 PDRAAAEEVFVNKNPQSTLKLAQARGAVLAACGAAGLDVNEHAARLVKKAVVGTGGADKT 120
Query: 125 QIHMMLKMLMPESFF 139
Q+ MLK+L+P
Sbjct: 121 QVQAMLKVLLPGVKI 135
>gi|189485464|ref|YP_001956405.1| crossover junction endodeoxyribonuclease RuvC [uncultured Termite
group 1 bacterium phylotype Rs-D17]
gi|238058359|sp|B1H0B2|RUVC_UNCTG RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|170287423|dbj|BAG13944.1| crossover junction endodeoxyribonuclease RuvC [uncultured Termite
group 1 bacterium phylotype Rs-D17]
Length = 190
Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 45/137 (32%), Positives = 72/137 (52%), Gaps = 1/137 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGD-NLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+ I+GIDPGL TGWG+V+ + + G I + L RL + L VI +
Sbjct: 1 MIILGIDPGLSLTGWGVVEAFSRDKVNPLQYGCIKTMPSVPLIQRLQTINTKLQSVIDKY 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
+PE A++E++F K + +GQ R IL+ +L +IP+ EY P ++K A+ G G DK
Sbjct: 61 KPEVASIEELFFFKATKSIAAVGQTRGAIILTASLNKIPLFEYNPKSVKTALTGYGSADK 120
Query: 124 KQIHMMLKMLMPESFFK 140
Q+ ++K +
Sbjct: 121 YQMQRIVKTFLRLKEIP 137
>gi|305681296|ref|ZP_07404103.1| crossover junction endodeoxyribonuclease RuvC [Corynebacterium
matruchotii ATCC 14266]
gi|305659501|gb|EFM49001.1| crossover junction endodeoxyribonuclease RuvC [Corynebacterium
matruchotii ATCC 14266]
Length = 235
Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 39/135 (28%), Positives = 70/135 (51%), Gaps = 1/135 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R++GIDPGL R G +V G ++ V+ G + + +A RL +L E D + +
Sbjct: 21 MRVMGIDPGLTRCGLSVVQAGRGRSVIPVAVGVVRTPSDSDIAHRLLELSEAANDWLDQY 80
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
+P+ A+E++F + + + +L+ A I V Y P+ +KKA+ G G DK
Sbjct: 81 QPDVVAIERIFERGNVSTVMNTAHGVGVLMLAAAQRGIDVHLYTPSEVKKAISGNGRADK 140
Query: 124 KQIHMMLKMLMPESF 138
KQ+ M+ ++ +
Sbjct: 141 KQMTAMITRILGLTE 155
>gi|88608702|ref|YP_506819.1| crossover junction endodeoxyribonuclease RuvC [Neorickettsia
sennetsu str. Miyayama]
gi|123763686|sp|Q2GCH7|RUVC_NEOSM RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|88600871|gb|ABD46339.1| crossover junction endodeoxyribonuclease RuvC [Neorickettsia
sennetsu str. Miyayama]
Length = 166
Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 54/147 (36%), Positives = 88/147 (59%), Gaps = 3/147 (2%)
Query: 8 IGIDPGLRRTGWGIVDVAGD-NLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
+G+DPGL RTGW +V+ G N+ ++ SG + + + SL+ RL +++ G++DVI+ P
Sbjct: 6 LGVDPGLLRTGWAVVEYDGLCNVRYIDSGIVKTASQGSLSARLEKIHRGISDVIEKVNPS 65
Query: 67 EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
A +E+VFVN + ++L L R IL+ AL + + E+AP+ +KK + G G K Q+
Sbjct: 66 VAVLEKVFVNNNPYSSLNLAYCRGALILTLALKGLFIVEFAPSVLKKRITGNGRATKAQV 125
Query: 127 HMMLKMLMPESF--FKGKDAADALAIA 151
M++ L+ K D DALA+A
Sbjct: 126 KYMVEQLLGLDPCLSKYSDLYDALALA 152
>gi|254424620|ref|ZP_05038338.1| Crossover junction endodeoxyribonuclease RuvC superfamily
[Synechococcus sp. PCC 7335]
gi|196192109|gb|EDX87073.1| Crossover junction endodeoxyribonuclease RuvC superfamily
[Synechococcus sp. PCC 7335]
Length = 157
Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 41/155 (26%), Positives = 75/155 (48%), Gaps = 9/155 (5%)
Query: 11 DPGLRRTGWGIVDVAGDNLC-------FVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
DPGL G+G+++ + + G + + R RLC +Y L VI +
Sbjct: 2 DPGLAILGFGVLEYDPAKMRDLMPDIRVIDYGIVQTPARTDTGQRLCTIYNDLHSVIDEY 61
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
+P+ ++E++F + T+ + QAR + +L A +P E+ P IK+++ G G+ DK
Sbjct: 62 KPDLVSIEKLFFYR-MGNTILVAQARGVVMLVLAQCNLPFVEFTPAQIKQSITGHGNADK 120
Query: 124 KQIHMMLKMLMPES-FFKGKDAADALAIAVCHAYH 157
++ + + K DAAD LA+A+ +
Sbjct: 121 VEVQDAVARELNLEAIPKPDDAADGLAVALTAWFR 155
>gi|326773259|ref|ZP_08232542.1| crossover junction endodeoxyribonuclease RuvC [Actinomyces viscosus
C505]
gi|326636489|gb|EGE37392.1| crossover junction endodeoxyribonuclease RuvC [Actinomyces viscosus
C505]
Length = 223
Score = 131 bits (331), Expect = 2e-29, Method: Composition-based stats.
Identities = 51/156 (32%), Positives = 78/156 (50%), Gaps = 2/156 (1%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
R++GIDPGL R G G VDV + V G + + QS RL + E + D I
Sbjct: 19 RVLGIDPGLTRCGLGCVDVDPRRQVRLVEVGVVRTPPSQSPELRLLTITEAIEDWIARLG 78
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P ++E+VF + + + + Q A+ + A A + V+++ P+ K AV G G DK
Sbjct: 79 PSVVSIERVFAQDNLRSVIGVAQVMGTAMATAARAGLEVAQHTPSEAKAAVTGSGTADKA 138
Query: 125 QIHMMLKMLMPESFFK-GKDAADALAIAVCHAYHAN 159
Q+ M+ ++ DAADALA A+CH +
Sbjct: 139 QVQAMVTRILGLDAPPRPADAADALAQAICHGWRGG 174
>gi|312880159|ref|ZP_07739959.1| crossover junction endodeoxyribonuclease RuvC [Aminomonas
paucivorans DSM 12260]
gi|310783450|gb|EFQ23848.1| crossover junction endodeoxyribonuclease RuvC [Aminomonas
paucivorans DSM 12260]
Length = 171
Score = 131 bits (331), Expect = 2e-29, Method: Composition-based stats.
Identities = 42/135 (31%), Positives = 66/135 (48%)
Query: 8 IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEE 67
+G+DPGL G+G+V GD L G + + + L RL LYE L W P
Sbjct: 10 LGLDPGLGTLGYGLVRQKGDRLLAEEYGVVRTPPGEPLPDRLRMLYEELRRRTGAWHPSV 69
Query: 68 AAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIH 127
AVE+++ K+ + QAR + +L +P+ E P+ +K AV G G +K+Q+
Sbjct: 70 VAVERLYFGKNVTTAEMVWQARGVVLLFATQLGVPLFEPKPSEVKLAVCGNGGAEKRQVQ 129
Query: 128 MMLKMLMPESFFKGK 142
M++ L+ S
Sbjct: 130 GMVQCLLGLSELPRP 144
>gi|88808985|ref|ZP_01124494.1| Holliday junction resolvase RuvC [Synechococcus sp. WH 7805]
gi|88786927|gb|EAR18085.1| Holliday junction resolvase RuvC [Synechococcus sp. WH 7805]
Length = 154
Score = 131 bits (331), Expect = 2e-29, Method: Composition-based stats.
Identities = 42/138 (30%), Positives = 72/138 (52%), Gaps = 1/138 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPGL R G+G+++ AG + G I + + R+ ++ L +I+ W
Sbjct: 1 MRILGIDPGLARVGYGVIETAGGEQTMLDCGIIQTDSGRPEGERMVEIARDLRQLIRAWN 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
PE AAVE+ F + + + QAR + I++ A +P+ E+ P IK+A+ G GH DK
Sbjct: 61 PELAAVEKFFFYRSSNTIAVV-QARGVVIMTLARFGLPIVEFPPMQIKQALTGHGHADKD 119
Query: 125 QIHMMLKMLMPESFFKGK 142
++ + +
Sbjct: 120 EVLEAVMRELSLDKPPRP 137
>gi|225021301|ref|ZP_03710493.1| hypothetical protein CORMATOL_01320 [Corynebacterium matruchotii
ATCC 33806]
gi|224946034|gb|EEG27243.1| hypothetical protein CORMATOL_01320 [Corynebacterium matruchotii
ATCC 33806]
Length = 223
Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats.
Identities = 39/135 (28%), Positives = 70/135 (51%), Gaps = 1/135 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R++GIDPGL R G +V G ++ V+ G + + +A RL +L E D + +
Sbjct: 9 MRVMGIDPGLTRCGLSVVQAGRGRSVIPVAVGVVRTPSDSDIAHRLLELSEAANDWLDQY 68
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
+P+ A+E++F + + + +L+ A I V Y P+ +KKA+ G G DK
Sbjct: 69 QPDVVAIERIFERGNVSTVMNTAHGVGVLMLAAAQRGIDVHLYTPSEVKKAISGNGRADK 128
Query: 124 KQIHMMLKMLMPESF 138
KQ+ M+ ++ +
Sbjct: 129 KQMTAMITRILGLTE 143
>gi|260654960|ref|ZP_05860448.1| crossover junction endodeoxyribonuclease RuvC [Jonquetella anthropi
E3_33 E1]
gi|260630275|gb|EEX48469.1| crossover junction endodeoxyribonuclease RuvC [Jonquetella anthropi
E3_33 E1]
Length = 152
Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats.
Identities = 43/135 (31%), Positives = 68/135 (50%), Gaps = 1/135 (0%)
Query: 17 TGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVN 76
G+G V G L S G I + ++L RL LY+ L + I+ P AVE+++
Sbjct: 1 MGYGAVVQRGGELRAESCGCIETKPDRTLPERLKILYDQLREQIERCSPHFMAVERLYFG 60
Query: 77 KDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPE 136
+ + QAR + +L A + V E P+ K V G G+ +K+Q+ M+++L+
Sbjct: 61 HNRTTAEAVWQARGVVLLLAAQFGLDVVEPKPSEAKLTVCGDGNAEKRQVQEMVRILLGL 120
Query: 137 -SFFKGKDAADALAI 150
+ DAADALAI
Sbjct: 121 KEIPRPDDAADALAI 135
>gi|88705604|ref|ZP_01103314.1| Crossover junction endodeoxyribonuclease RuvC [Congregibacter
litoralis KT71]
gi|88700117|gb|EAQ97226.1| Crossover junction endodeoxyribonuclease RuvC [Congregibacter
litoralis KT71]
Length = 172
Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats.
Identities = 52/137 (37%), Positives = 78/137 (56%), Gaps = 1/137 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG ++TG+GI+ +++SG I L RL + E + ++++ P
Sbjct: 3 IILGIDPGSQKTGFGIISTLNGKNSYITSGVIRLPKGA-LPERLRIIAESVAELVELHGP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
E +VEQVF+ K A A LKLGQAR AI+ L + VSEY+ IK++V+G G DK Q
Sbjct: 62 TELSVEQVFLAKSADAALKLGQARGAAIVPCVLRGLEVSEYSARQIKQSVVGTGAADKAQ 121
Query: 126 IHMMLKMLMPESFFKGK 142
+ M+K L+ +
Sbjct: 122 VQHMVKALLKLPGAPQE 138
>gi|149375110|ref|ZP_01892882.1| Holliday junction resolvase [Marinobacter algicola DG893]
gi|149360474|gb|EDM48926.1| Holliday junction resolvase [Marinobacter algicola DG893]
Length = 172
Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats.
Identities = 67/160 (41%), Positives = 102/160 (63%), Gaps = 2/160 (1%)
Query: 8 IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEE 67
+G+DPG R TG+GIV G + ++ SG I + +A RL ++ L +I +RPEE
Sbjct: 1 MGVDPGSRITGYGIVRAEGRVIEYIDSGCIRV-GEKPMAERLQTIFHSLATLIGEYRPEE 59
Query: 68 AAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIH 127
A+EQVF+ ++ + LKLGQAR AI++ A + + V EY+ +K+AV+G G DK Q+
Sbjct: 60 FAIEQVFMARNPDSALKLGQARGAAIVAAANSGLAVHEYSARQVKQAVVGKGGADKAQVQ 119
Query: 128 MMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
M+++L+ S DAADALAIA+CHA+ + S ++AS
Sbjct: 120 HMVQVLLALSRKPQADAADALAIALCHAHMSQS-VARLAS 158
>gi|67921282|ref|ZP_00514801.1| Crossover junction endoribonuclease [Crocosphaera watsonii WH 8501]
gi|67857399|gb|EAM52639.1| Crossover junction endoribonuclease [Crocosphaera watsonii WH 8501]
Length = 162
Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats.
Identities = 38/147 (25%), Positives = 68/147 (46%), Gaps = 1/147 (0%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFV-SSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
+GIDPGL GW ++ L + GTI + + S + RL ++ L+++++ ++P
Sbjct: 6 WLGIDPGLAIVGWAMLQENEQELPLIIDYGTIETNKQLSTSQRLVEIETDLSELLREFKP 65
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+E F N+ A + QA + L + + K +G G +KK+
Sbjct: 66 QGIAIEMPFFNRTIKAAGGVMQALGVINLVCYRDSKIEAIFLHQASWKCHLGDGKANKKE 125
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAV 152
+ M+ L D+ DA+AIA
Sbjct: 126 VAEMVATLFDLETLPIDDSVDAIAIAY 152
>gi|15609731|ref|NP_217110.1| Holliday junction resolvase [Mycobacterium tuberculosis H37Rv]
gi|15842134|ref|NP_337171.1| Holliday junction resolvase [Mycobacterium tuberculosis CDC1551]
gi|31793778|ref|NP_856271.1| Holliday junction resolvase [Mycobacterium bovis AF2122/97]
gi|121638479|ref|YP_978703.1| Holliday junction resolvase [Mycobacterium bovis BCG str. Pasteur
1173P2]
gi|148662433|ref|YP_001283956.1| Holliday junction resolvase [Mycobacterium tuberculosis H37Ra]
gi|148823789|ref|YP_001288543.1| Holliday junction resolvase [Mycobacterium tuberculosis F11]
gi|167967068|ref|ZP_02549345.1| Holliday junction resolvase [Mycobacterium tuberculosis H37Ra]
gi|215404544|ref|ZP_03416725.1| Holliday junction resolvase [Mycobacterium tuberculosis 02_1987]
gi|215412370|ref|ZP_03421130.1| Holliday junction resolvase [Mycobacterium tuberculosis 94_M4241A]
gi|215427997|ref|ZP_03425916.1| Holliday junction resolvase [Mycobacterium tuberculosis T92]
gi|215431549|ref|ZP_03429468.1| Holliday junction resolvase [Mycobacterium tuberculosis EAS054]
gi|215446845|ref|ZP_03433597.1| Holliday junction resolvase [Mycobacterium tuberculosis T85]
gi|218754332|ref|ZP_03533128.1| Holliday junction resolvase [Mycobacterium tuberculosis GM 1503]
gi|219558598|ref|ZP_03537674.1| Holliday junction resolvase [Mycobacterium tuberculosis T17]
gi|224990973|ref|YP_002645660.1| Holliday junction resolvase [Mycobacterium bovis BCG str. Tokyo
172]
gi|253798324|ref|YP_003031325.1| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
tuberculosis KZN 1435]
gi|254232712|ref|ZP_04926039.1| crossover junction endodeoxyribonuclease ruvC (holliday junction
nuclease) [Mycobacterium tuberculosis C]
gi|254365263|ref|ZP_04981308.1| crossover junction endodeoxyribonuclease ruvC (holliday junction
nuclease) [Mycobacterium tuberculosis str. Haarlem]
gi|254551645|ref|ZP_05142092.1| Holliday junction resolvase [Mycobacterium tuberculosis '98-R604
INH-RIF-EM']
gi|260187607|ref|ZP_05765081.1| Holliday junction resolvase [Mycobacterium tuberculosis CPHL_A]
gi|260201722|ref|ZP_05769213.1| Holliday junction resolvase [Mycobacterium tuberculosis T46]
gi|260205916|ref|ZP_05773407.1| Holliday junction resolvase [Mycobacterium tuberculosis K85]
gi|289444133|ref|ZP_06433877.1| crossover junction endodeoxyribonuclease RuvC [Mycobacterium
tuberculosis T46]
gi|289448244|ref|ZP_06437988.1| crossover junction endodeoxyribonuclease RuvC [Mycobacterium
tuberculosis CPHL_A]
gi|289553617|ref|ZP_06442827.1| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
tuberculosis KZN 605]
gi|289570765|ref|ZP_06450992.1| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
tuberculosis T17]
gi|289575304|ref|ZP_06455531.1| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
tuberculosis K85]
gi|289746387|ref|ZP_06505765.1| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
tuberculosis 02_1987]
gi|289751218|ref|ZP_06510596.1| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
tuberculosis T92]
gi|289754713|ref|ZP_06514091.1| holliday junction resolvase [Mycobacterium tuberculosis EAS054]
gi|289758725|ref|ZP_06518103.1| holliday junction resolvase [Mycobacterium tuberculosis T85]
gi|289762767|ref|ZP_06522145.1| crossover junction endodeoxyribonuclease ruvC (holliday junction
nuclease) [Mycobacterium tuberculosis GM 1503]
gi|294994297|ref|ZP_06799988.1| Holliday junction resolvase [Mycobacterium tuberculosis 210]
gi|297635204|ref|ZP_06952984.1| Holliday junction resolvase [Mycobacterium tuberculosis KZN 4207]
gi|297732197|ref|ZP_06961315.1| Holliday junction resolvase [Mycobacterium tuberculosis KZN R506]
gi|298526069|ref|ZP_07013478.1| holliday junction nuclease [Mycobacterium tuberculosis 94_M4241A]
gi|306794077|ref|ZP_07432379.1| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
tuberculosis SUMu005]
gi|306798491|ref|ZP_07436793.1| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
tuberculosis SUMu006]
gi|306804354|ref|ZP_07441022.1| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
tuberculosis SUMu008]
gi|306972983|ref|ZP_07485644.1| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
tuberculosis SUMu010]
gi|307080693|ref|ZP_07489863.1| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
tuberculosis SUMu011]
gi|313659532|ref|ZP_07816412.1| Holliday junction resolvase [Mycobacterium tuberculosis KZN V2475]
gi|54039581|sp|P66761|RUVC_MYCBO RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|54042208|sp|P66760|RUVC_MYCTU RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|166233269|sp|A1KLU2|RUVC_MYCBP RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|166233271|sp|A5U5U4|RUVC_MYCTA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|254767479|sp|C1AF63|RUVC_MYCBT RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|1478218|emb|CAB01281.1| PROBABLE CROSSOVER JUNCTION ENDODEOXYRIBONUCLEASE RUVC (HOLLIDAY
JUNCTION NUCLEASE) (HOLLIDAY JUNCTION RESOLVASE)
[Mycobacterium tuberculosis H37Rv]
gi|13882418|gb|AAK46985.1| Holliday junction nuclease [Mycobacterium tuberculosis CDC1551]
gi|31619372|emb|CAD94810.1| PROBABLE CROSSOVER JUNCTION ENDODEOXYRIBONUCLEASE RUVC (HOLLIDAY
JUNCTION NUCLEASE) (HOLLIDAY JUNCTION RESOLVASE)
[Mycobacterium bovis AF2122/97]
gi|121494127|emb|CAL72605.1| Probable crossover junction endodeoxyribonuclease ruvC
[Mycobacterium bovis BCG str. Pasteur 1173P2]
gi|124601771|gb|EAY60781.1| crossover junction endodeoxyribonuclease ruvC (holliday junction
nuclease) [Mycobacterium tuberculosis C]
gi|134150776|gb|EBA42821.1| crossover junction endodeoxyribonuclease ruvC (holliday junction
nuclease) [Mycobacterium tuberculosis str. Haarlem]
gi|148506585|gb|ABQ74394.1| Holliday junction resolvase [Mycobacterium tuberculosis H37Ra]
gi|148722316|gb|ABR06941.1| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
tuberculosis F11]
gi|224774086|dbj|BAH26892.1| Holliday junction resolvase [Mycobacterium bovis BCG str. Tokyo
172]
gi|253319827|gb|ACT24430.1| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
tuberculosis KZN 1435]
gi|289417052|gb|EFD14292.1| crossover junction endodeoxyribonuclease RuvC [Mycobacterium
tuberculosis T46]
gi|289421202|gb|EFD18403.1| crossover junction endodeoxyribonuclease RuvC [Mycobacterium
tuberculosis CPHL_A]
gi|289438249|gb|EFD20742.1| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
tuberculosis KZN 605]
gi|289539735|gb|EFD44313.1| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
tuberculosis K85]
gi|289544519|gb|EFD48167.1| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
tuberculosis T17]
gi|289686915|gb|EFD54403.1| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
tuberculosis 02_1987]
gi|289691805|gb|EFD59234.1| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
tuberculosis T92]
gi|289695300|gb|EFD62729.1| holliday junction resolvase [Mycobacterium tuberculosis EAS054]
gi|289710273|gb|EFD74289.1| crossover junction endodeoxyribonuclease ruvC (holliday junction
nuclease) [Mycobacterium tuberculosis GM 1503]
gi|289714289|gb|EFD78301.1| holliday junction resolvase [Mycobacterium tuberculosis T85]
gi|298495863|gb|EFI31157.1| holliday junction nuclease [Mycobacterium tuberculosis 94_M4241A]
gi|308337557|gb|EFP26408.1| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
tuberculosis SUMu005]
gi|308341224|gb|EFP30075.1| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
tuberculosis SUMu006]
gi|308349031|gb|EFP37882.1| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
tuberculosis SUMu008]
gi|308357599|gb|EFP46450.1| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
tuberculosis SUMu010]
gi|308361541|gb|EFP50392.1| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
tuberculosis SUMu011]
gi|323718790|gb|EGB27947.1| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
tuberculosis CDC1551A]
gi|326904207|gb|EGE51140.1| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
tuberculosis W-148]
gi|328458094|gb|AEB03517.1| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
tuberculosis KZN 4207]
Length = 188
Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats.
Identities = 47/166 (28%), Positives = 81/166 (48%), Gaps = 3/166 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R++G+DPGL R G +++ G L + + + +LA RL + + + +
Sbjct: 1 MRVMGVDPGLTRCGLSLIESGRGRQLTALDVDVVRTPSDAALAQRLLAISDAVEHWLDTH 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
PE A+E+VF + + QA + L+ A + V + P+ +K AV G G DK
Sbjct: 61 HPEVVAIERVFSQLNVTTVMGTAQAGGVIALAAAKRGVDVHFHTPSEVKAAVTGNGSADK 120
Query: 124 KQIHMMLKMLMPES-FFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
Q+ M+ ++ DAADALA+A+CH + A ++A
Sbjct: 121 AQVTAMVTKILALQAKPTPADAADALALAICHCWRA-PTIARMAEA 165
>gi|16332062|ref|NP_442790.1| Holliday juction resolvase RuvC [Synechocystis sp. PCC 6803]
gi|6685944|sp|Q55506|RUVC_SYNY3 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|1001371|dbj|BAA10861.1| Holliday juction resolvase; RuvC [Synechocystis sp. PCC 6803]
Length = 167
Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats.
Identities = 37/148 (25%), Positives = 67/148 (45%), Gaps = 1/148 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGD-NLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
R +GIDPGL GW I+D D + V G I + S RL ++ + + +++ +
Sbjct: 9 RWLGIDPGLAIIGWAILDGQPDLSAHLVDYGIIETSKNLSTPERLVEIEQDIHVLLEEFS 68
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ A+E F ++ A + QA + L + + + K +G G +K
Sbjct: 69 PQAIAMEMPFFSRQIKAAGGVMQALGVINLVIYREKSIQPVFLHQSSWKCHLGNGKANKA 128
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAV 152
++ M++ D+ DA+AIA+
Sbjct: 129 EVAAMVQNFFGLEDLPIDDSVDAIAIAL 156
>gi|294055497|ref|YP_003549155.1| crossover junction endodeoxyribonuclease RuvC [Coraliomargarita
akajimensis DSM 45221]
gi|293614830|gb|ADE54985.1| crossover junction endodeoxyribonuclease RuvC [Coraliomargarita
akajimensis DSM 45221]
Length = 165
Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats.
Identities = 49/152 (32%), Positives = 80/152 (52%), Gaps = 1/152 (0%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
++GIDP LR +G+ +V+ G+ + + + T+ S+ L + + D I +
Sbjct: 9 VLGIDPSLRGSGFAVVEYRGNQQVRLLEATTLHLKRDLSMPECLGAIGNQVEDFIDQHQI 68
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
E AVEQ ++ LG AR AI + A+ +PV EYAP +K+AV+G+G K+Q
Sbjct: 69 EHVAVEQTIYVQNFQTAQVLGAARGAAIAAAAMRGLPVFEYAPLRVKQAVVGMGRASKEQ 128
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYH 157
+ + L K D +DA A+A+CHA+
Sbjct: 129 VARTVHTLTGVDVGKRYDESDAAAVALCHAFT 160
>gi|21220020|ref|NP_625799.1| Holliday junction resolvase [Streptomyces coelicolor A3(2)]
gi|13431870|sp|Q9L289|RUVC_STRCO RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|6822216|emb|CAB70922.1| crossover junction endodeoxyribonuclease [Streptomyces coelicolor
A3(2)]
Length = 188
Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats.
Identities = 47/133 (35%), Positives = 72/133 (54%), Gaps = 1/133 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVD-VAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R++G+DPGL R G G+V+ VAG L + G + + L RL + +G+ +
Sbjct: 1 MRVLGVDPGLTRRGIGVVEGVAGRPLTMIGVGVVRTPADADLGHRLVAVEQGIEQWLDEH 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
RPE AVE+VF + + QA A+AIL + IPV+ + P+ +K AV G G DK
Sbjct: 61 RPEFVAVERVFSQHNVRTVMGTAQASAVAILCASRRGIPVALHTPSEVKAAVTGSGRADK 120
Query: 124 KQIHMMLKMLMPE 136
Q+ M+ L+
Sbjct: 121 AQVGAMVTRLLRL 133
>gi|172034980|ref|YP_001801481.1| Holliday junction resolvase [Cyanothece sp. ATCC 51142]
gi|171696434|gb|ACB49415.1| Holliday junction resolvase [Cyanothece sp. ATCC 51142]
Length = 174
Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats.
Identities = 38/147 (25%), Positives = 64/147 (43%), Gaps = 1/147 (0%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFV-SSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
+GIDPGL GW ++ + L + GTI + + S + RL ++ L +++ + P
Sbjct: 18 WLGIDPGLAIVGWAMLQESEQQLPLIIDYGTIETNKQLSTSQRLLEIESDLGELLTEFEP 77
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+E F N+ A + QA + L + K +G G KK+
Sbjct: 78 QGIAIEMPFFNRTIKAAGGVMQALGVINLVCYRETNIEPIFLHQASWKCHLGDGKAKKKE 137
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAV 152
+ M+ L D+ DA+AIA
Sbjct: 138 VAQMITTLFNLDKLPIDDSVDAIAIAY 164
>gi|83954483|ref|ZP_00963194.1| Holliday junction resolvase [Sulfitobacter sp. NAS-14.1]
gi|83840767|gb|EAP79938.1| Holliday junction resolvase [Sulfitobacter sp. NAS-14.1]
Length = 168
Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats.
Identities = 88/165 (53%), Positives = 111/165 (67%), Gaps = 1/165 (0%)
Query: 4 SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
IR+IGIDPGLR GWG++DVAG + V++G I LA RL L+ LT ++ +
Sbjct: 1 MIRVIGIDPGLRNMGWGVIDVAGSRITHVANG-ICQSEGADLATRLLSLHAQLTRIMVTY 59
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
RP+ AAVEQ FVNKD TLKLGQAR IA+L PA A + V EYAPNT+KK V+GVGH DK
Sbjct: 60 RPDAAAVEQTFVNKDGAGTLKLGQARGIAMLVPAQAGLAVGEYAPNTVKKTVVGVGHADK 119
Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
Q+ M++M +P + G DAADALAIA+CHA+H + A
Sbjct: 120 GQVLHMVRMQLPGAEIAGPDAADALAIAICHAHHGGASTLAQAVA 164
>gi|160872220|ref|ZP_02062352.1| crossover junction endodeoxyribonuclease RuvC [Rickettsiella
grylli]
gi|159121019|gb|EDP46357.1| crossover junction endodeoxyribonuclease RuvC [Rickettsiella
grylli]
Length = 184
Score = 131 bits (329), Expect = 5e-29, Method: Composition-based stats.
Identities = 50/139 (35%), Positives = 91/139 (65%), Gaps = 1/139 (0%)
Query: 2 RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
K+ I+GIDPG TG+G++ + G L ++ SG I V + + RL +++ GL +++
Sbjct: 12 SKNRIILGIDPGSCITGYGLIQMEGSELNYLDSGCIKV-VNVAFSERLEKIFTGLQKLLQ 70
Query: 62 NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
++ P EAA+EQVF++ + A LKLGQAR +A+++ ALA++ + EY+ +K++V+G G
Sbjct: 71 DYTPHEAAIEQVFMHINPHAALKLGQARGVALVAAALAKLRICEYSARQVKQSVVGYGAA 130
Query: 122 DKKQIHMMLKMLMPESFFK 140
K+Q+ M+++L+ +
Sbjct: 131 SKQQVQHMVRVLLHLNCTP 149
>gi|227503510|ref|ZP_03933559.1| Holliday junction resolvase [Corynebacterium accolens ATCC 49725]
gi|227076013|gb|EEI13976.1| Holliday junction resolvase [Corynebacterium accolens ATCC 49725]
Length = 185
Score = 131 bits (329), Expect = 5e-29, Method: Composition-based stats.
Identities = 52/156 (33%), Positives = 81/156 (51%), Gaps = 2/156 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCF-VSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R++GIDPGL R G +V VS G + + + L RL +L + + ++
Sbjct: 1 MRVMGIDPGLTRCGLSVVQAGRGRAILPVSVGVVRTPSDKDLTERLLRLSVAAKEWMDDY 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
P+ A+E+VF ++ + +L+ A IPV Y P+ +KKA+ G G DK
Sbjct: 61 SPDVVAIERVFERGQVSTVMQTAHVVGVLVLAAAERDIPVYMYTPSEVKKAISGNGRADK 120
Query: 124 KQIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHA 158
KQ+ M+ ++ K DAADALA+AVCH + A
Sbjct: 121 KQMTTMITRILGLTEPPKPADAADALALAVCHCWRA 156
>gi|197106546|ref|YP_002131923.1| RuvC [Phenylobacterium zucineum HLK1]
gi|196479966|gb|ACG79494.1| RuvC [Phenylobacterium zucineum HLK1]
Length = 170
Score = 130 bits (328), Expect = 5e-29, Method: Composition-based stats.
Identities = 63/133 (47%), Positives = 87/133 (65%)
Query: 3 KSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
+ +RI+G+DPGLRRTGWG+V G L V+ G I + A RL L G+ +I
Sbjct: 5 RPVRILGLDPGLRRTGWGVVACEGARLSHVAHGVIAPPDKLPFAERLLVLLSGIEAIIAE 64
Query: 63 WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
P+EAAVE+ FVN +A + LKLG ARA+A+++PA A +PV+EYA +KKAV+G G D
Sbjct: 65 HAPDEAAVEETFVNDNARSALKLGHARAMALVAPARAGLPVAEYAATVVKKAVVGTGGAD 124
Query: 123 KKQIHMMLKMLMP 135
K Q+ M+ L+P
Sbjct: 125 KAQVGWMIARLLP 137
>gi|78184289|ref|YP_376724.1| Holliday junction resolvase [Synechococcus sp. CC9902]
gi|116071065|ref|ZP_01468334.1| Holliday junction resolvase RuvC [Synechococcus sp. BL107]
gi|123770968|sp|Q3AYZ7|RUVC_SYNS9 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|78168583|gb|ABB25680.1| Holliday junction endonuclease RuvC [Synechococcus sp. CC9902]
gi|116066470|gb|EAU72227.1| Holliday junction resolvase RuvC [Synechococcus sp. BL107]
Length = 154
Score = 130 bits (328), Expect = 5e-29, Method: Composition-based stats.
Identities = 44/138 (31%), Positives = 74/138 (53%), Gaps = 1/138 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPGL R G+G++D +G + G I + S R+ + L +I+ WR
Sbjct: 1 MRILGIDPGLARVGYGVIDTSGGQQRMLDCGIIRTEPGYSEGDRMVVIASDLRQLIRAWR 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
PE AAVE+ F + T+ + QAR + +++ A ++PV E+ P IK A+ G GH +K
Sbjct: 61 PELAAVEKFFFYRS-STTISVVQARGVVMMTLARFKVPVVEFPPMQIKLALAGFGHAEKD 119
Query: 125 QIHMMLKMLMPESFFKGK 142
++ + + +
Sbjct: 120 EVLEAVMRELNLTDPPRP 137
>gi|320107653|ref|YP_004183243.1| crossover junction endodeoxyribonuclease RuvC [Terriglobus
saanensis SP1PR4]
gi|319926174|gb|ADV83249.1| crossover junction endodeoxyribonuclease RuvC [Terriglobus
saanensis SP1PR4]
Length = 168
Score = 130 bits (328), Expect = 5e-29, Method: Composition-based stats.
Identities = 51/138 (36%), Positives = 76/138 (55%), Gaps = 4/138 (2%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGD----NLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
+R+ GID G TGWG+V+V L +++G I + RL Q+Y LT +I
Sbjct: 1 MRVFGIDCGTEYTGWGVVEVDDSGKRQRLVPIAAGAIKLHKKHKTPERLQQVYVELTGLI 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
+ PE A+E VF +A + LKLG R +A+L+ A + V+EYAP +IK AV+G G
Sbjct: 61 TAYEPEVVAIEDVFFAANAKSALKLGHVRGVAMLAAASCGLQVAEYAPLSIKSAVVGYGL 120
Query: 121 GDKKQIHMMLKMLMPESF 138
K+Q+ M+ L+
Sbjct: 121 AAKEQVQFMVARLLDLEK 138
>gi|85709535|ref|ZP_01040600.1| Holliday junction resolvasome endonuclease subunit [Erythrobacter
sp. NAP1]
gi|85688245|gb|EAQ28249.1| Holliday junction resolvasome endonuclease subunit [Erythrobacter
sp. NAP1]
Length = 157
Score = 130 bits (328), Expect = 5e-29, Method: Composition-based stats.
Identities = 52/131 (39%), Positives = 80/131 (61%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ I+G+DP L TGWG++ G L +++G I + + +A RL L G+ +VI
Sbjct: 1 MIILGLDPSLTCTGWGLIRAEGSRLSHIANGQIKTNSKAPMAERLAALSCGIAEVIAAHG 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
PE AA E+VFVN++ +TLKL QAR + + A + V+E+A +KKA +G G DK
Sbjct: 61 PERAACEEVFVNENPKSTLKLAQARGAVLAACGAAGLSVNEHAARLVKKATVGTGAADKS 120
Query: 125 QIHMMLKMLMP 135
Q+ M+K+L+P
Sbjct: 121 QVAAMIKVLLP 131
>gi|33865249|ref|NP_896808.1| Holliday junction resolvase [Synechococcus sp. WH 8102]
gi|44888399|sp|Q7U8A6|RUVC_SYNPX RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|33632418|emb|CAE07230.1| Holliday junction resolvase RuvC [Synechococcus sp. WH 8102]
Length = 154
Score = 130 bits (328), Expect = 5e-29, Method: Composition-based stats.
Identities = 43/138 (31%), Positives = 76/138 (55%), Gaps = 1/138 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPGL R G+G++D +G + + G I + +S R+ ++ L +I+ WR
Sbjct: 1 MRILGIDPGLARVGYGVIDTSGGHQRMLDCGIIRTDPGRSDGERMVEIASDLRQLIRAWR 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
PE AAVE+ F + + + QAR + +++ A ++PV E+ P IK A+ G GH +K
Sbjct: 61 PELAAVEKFFFYRSSNTINVV-QARGVVMMTLARFKVPVVEFPPMQIKLALAGFGHAEKD 119
Query: 125 QIHMMLKMLMPESFFKGK 142
++ + + +
Sbjct: 120 EVLEAVMRELDLTEPPRP 137
>gi|84501644|ref|ZP_00999816.1| Holliday junction nuclease RuvC [Oceanicola batsensis HTCC2597]
gi|84390265|gb|EAQ02824.1| Holliday junction nuclease RuvC [Oceanicola batsensis HTCC2597]
Length = 167
Score = 130 bits (327), Expect = 6e-29, Method: Composition-based stats.
Identities = 81/159 (50%), Positives = 108/159 (67%), Gaps = 1/159 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+R+IGIDPGLR GWG++ V+G + V++G + +A RL L+ LT V+
Sbjct: 1 MRVIGIDPGLRSLGWGVISVSGSRISHVANGQC-AGSGTEMAERLLSLHAALTAVLIEHA 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ AAVEQVFVN + TLKLGQAR IA+L PA A +PV EYAPNT+KK+V+GVGH K+
Sbjct: 60 PDAAAVEQVFVNTNGAGTLKLGQARGIALLVPAQAGLPVGEYAPNTVKKSVVGVGHAAKE 119
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYY 163
Q+ M+++ +P G DAADALAIA+CHA+H S
Sbjct: 120 QVQHMVRLQLPGVDLSGPDAADALAIAICHAHHLGSAAA 158
>gi|306836242|ref|ZP_07469224.1| crossover junction endoribonuclease subunit C [Corynebacterium
accolens ATCC 49726]
gi|304567834|gb|EFM43417.1| crossover junction endoribonuclease subunit C [Corynebacterium
accolens ATCC 49726]
Length = 190
Score = 130 bits (327), Expect = 7e-29, Method: Composition-based stats.
Identities = 52/156 (33%), Positives = 81/156 (51%), Gaps = 2/156 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCF-VSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R++GIDPGL R G +V VS G + + + L RL +L + + ++
Sbjct: 6 MRVMGIDPGLTRCGLSVVQAGRGRAILPVSVGVVRTPSDKDLTERLLRLSVAAKEWMDDY 65
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
P+ A+E+VF ++ + +L+ A IPV Y P+ +KKA+ G G DK
Sbjct: 66 SPDVVAIERVFERGQVSTVMQTAHVVGVLVLAAAERDIPVYMYTPSEVKKAISGNGRADK 125
Query: 124 KQIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHA 158
KQ+ M+ ++ K DAADALA+AVCH + A
Sbjct: 126 KQMTTMITRILGLTEPPKPADAADALALAVCHCWRA 161
>gi|213966142|ref|ZP_03394329.1| crossover junction endodeoxyribonuclease RuvC [Corynebacterium
amycolatum SK46]
gi|213951240|gb|EEB62635.1| crossover junction endodeoxyribonuclease RuvC [Corynebacterium
amycolatum SK46]
Length = 186
Score = 130 bits (327), Expect = 8e-29, Method: Composition-based stats.
Identities = 38/134 (28%), Positives = 65/134 (48%), Gaps = 1/134 (0%)
Query: 8 IGIDPGLRRTGWGIVD-VAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
+GIDPGL R G I + G + ++ G + SL RL +L + + + P+
Sbjct: 2 MGIDPGLTRCGLSIAEGAQGRKVIPIAVGVARTPTTASLEDRLLRLSNAVEQWMDEYEPD 61
Query: 67 EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
A+E+VF + ++ A + +L+ A + V Y P+ +KKA+ G G DKKQ+
Sbjct: 62 VVAMERVFERGNVSTVMQTAHAVGVLVLAAARRGLEVHMYTPSEVKKALTGNGRADKKQM 121
Query: 127 HMMLKMLMPESFFK 140
MM+ ++
Sbjct: 122 TMMVTRILGLETPP 135
>gi|255325097|ref|ZP_05366203.1| crossover junction endodeoxyribonuclease RuvC [Corynebacterium
tuberculostearicum SK141]
gi|255297662|gb|EET76973.1| crossover junction endodeoxyribonuclease RuvC [Corynebacterium
tuberculostearicum SK141]
Length = 188
Score = 130 bits (327), Expect = 8e-29, Method: Composition-based stats.
Identities = 52/156 (33%), Positives = 81/156 (51%), Gaps = 2/156 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCF-VSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R++GIDPGL R G +V VS G + + + L RL +L + + ++
Sbjct: 6 MRVMGIDPGLTRCGLSVVQAGRGRAILPVSVGVVRTPSDKDLTERLLRLSVAAKEWMDDY 65
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
P+ A+E+VF ++ + +L+ A IPV Y P+ +KKA+ G G DK
Sbjct: 66 SPDVVAIERVFERGQVSTVMQTAHVVGVLVLAAAERDIPVYMYTPSEVKKAISGNGRADK 125
Query: 124 KQIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHA 158
KQ+ M+ ++ K DAADALA+AVCH + A
Sbjct: 126 KQMTTMITRILGLTEPPKPADAADALALAVCHCWRA 161
>gi|315444740|ref|YP_004077619.1| Holliday junction endonuclease RuvC [Mycobacterium sp. Spyr1]
gi|315263043|gb|ADT99784.1| Holliday junction endonuclease RuvC [Mycobacterium sp. Spyr1]
Length = 192
Score = 129 bits (326), Expect = 8e-29, Method: Composition-based stats.
Identities = 48/156 (30%), Positives = 80/156 (51%), Gaps = 2/156 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R++G+DPGL R G +++ G + + + + LA RL + + +
Sbjct: 1 MRVMGVDPGLTRCGLSVIESGRGRQVIALDVDVVRTPSDHPLAHRLLAISNAVEHWLDTH 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
RP+ A+E+VF N++A + QA + L+ A I V + P+ +K AV G G DK
Sbjct: 61 RPDVIAIERVFSNQNANTAMGTAQAGGVVALAAARRDIDVHFHTPSEVKAAVTGNGRADK 120
Query: 124 KQIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHA 158
Q+ M+ ++ DAADALA+A+CH + A
Sbjct: 121 AQVTEMVTRILALQQKPTPADAADALALAICHCWRA 156
>gi|134098595|ref|YP_001104256.1| Holliday junction resolvase [Saccharopolyspora erythraea NRRL 2338]
gi|291008208|ref|ZP_06566181.1| crossover junction endodeoxyribonuclease RuvC [Saccharopolyspora
erythraea NRRL 2338]
gi|166233295|sp|A4FBA6|RUVC_SACEN RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|133911218|emb|CAM01331.1| crossover junction endodeoxyribonuclease RuvC [Saccharopolyspora
erythraea NRRL 2338]
Length = 199
Score = 129 bits (326), Expect = 9e-29, Method: Composition-based stats.
Identities = 41/135 (30%), Positives = 70/135 (51%), Gaps = 1/135 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R++G+DPGL R G G+VD G + V G + Q L+ RL + E + + +
Sbjct: 1 MRVLGVDPGLTRCGIGVVDGGRGRTVTCVGVGVARTPADQELSARLLGVAEAVDEWLDTH 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
RPE A+E+VF + + Q I L+ A +PV+ + P+ +K A+ G G DK
Sbjct: 61 RPEVVAIERVFSQHNVRTVMGTAQVSGIVALAAARRGLPVAFHTPSEVKAAISGSGRADK 120
Query: 124 KQIHMMLKMLMPESF 138
+Q+ M+ ++ +
Sbjct: 121 RQVTTMVTKILGLAE 135
>gi|119961867|ref|YP_948038.1| Holliday junction resolvase [Arthrobacter aurescens TC1]
gi|166231577|sp|A1R726|RUVC_ARTAT RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|119948726|gb|ABM07637.1| crossover junction endodeoxyribonuclease RuvC [Arthrobacter
aurescens TC1]
Length = 189
Score = 129 bits (326), Expect = 9e-29, Method: Composition-based stats.
Identities = 50/166 (30%), Positives = 89/166 (53%), Gaps = 2/166 (1%)
Query: 4 SIRIIGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
++R++G+DPGL R G G+VD+ + V+ G + + +L RL + + + + +
Sbjct: 2 TLRVLGVDPGLTRCGIGVVDIEKNRRATMVAVGVVGTSAELTLDKRLLVIAQAIDEWLDR 61
Query: 63 WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
P+ AVE+VF + + + QA + I + A IPV+ + P+ +K AV G G +
Sbjct: 62 HEPDVVAVERVFSQMNVSTVMGVAQASGVVIAAAARRGIPVALHTPSEVKAAVTGSGTAN 121
Query: 123 KKQIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
K + ++ ++ + K DAADALA+A+ HA+ A SG +
Sbjct: 122 KDAVTKLVTKILRLDAPPKPADAADALALALTHAWRAGSGMGAASG 167
>gi|254516710|ref|ZP_05128769.1| crossover junction endodeoxyribonuclease RuvC [gamma
proteobacterium NOR5-3]
gi|219675133|gb|EED31500.1| crossover junction endodeoxyribonuclease RuvC [gamma
proteobacterium NOR5-3]
Length = 172
Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats.
Identities = 50/137 (36%), Positives = 78/137 (56%), Gaps = 1/137 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG ++TG+GI+ +++SG I L RL + E + ++++ P
Sbjct: 3 IILGIDPGSQKTGFGIISTLNGKNSYITSGVIRLPKGA-LPERLRIIAESVAELVELHGP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
E +VEQVF+ K A A LKLGQAR AI+ + + V+EY+ IK++V+G G DK Q
Sbjct: 62 TELSVEQVFLAKSADAALKLGQARGAAIVPCVIRGMEVAEYSARQIKQSVVGTGAADKAQ 121
Query: 126 IHMMLKMLMPESFFKGK 142
+ M+K L+ +
Sbjct: 122 VQHMVKALLNLPGQPQE 138
>gi|170740566|ref|YP_001769221.1| Holliday junction resolvase [Methylobacterium sp. 4-46]
gi|168194840|gb|ACA16787.1| crossover junction endodeoxyribonuclease RuvC [Methylobacterium sp.
4-46]
Length = 217
Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats.
Identities = 73/135 (54%), Positives = 97/135 (71%)
Query: 2 RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
+RI+GIDPGLRRTGWG++ V G L F + G + S +LA RL L++GL V+
Sbjct: 3 TTPVRILGIDPGLRRTGWGLITVTGTRLAFEACGVLTSDGDDALALRLRDLHDGLVRVVA 62
Query: 62 NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
RP+E AVE+ FVNKDA ATLKLG ARA+A+L PALA +PV+EYA N +KK V+GVGH
Sbjct: 63 AQRPDEVAVEETFVNKDAQATLKLGHARAVALLVPALAGLPVAEYAANLVKKTVVGVGHA 122
Query: 122 DKKQIHMMLKMLMPE 136
+K Q+ M++ L+P+
Sbjct: 123 EKGQVAAMVRFLLPK 137
>gi|322435997|ref|YP_004218209.1| crossover junction endodeoxyribonuclease RuvC [Acidobacterium sp.
MP5ACTX9]
gi|321163724|gb|ADW69429.1| crossover junction endodeoxyribonuclease RuvC [Acidobacterium sp.
MP5ACTX9]
Length = 172
Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats.
Identities = 49/137 (35%), Positives = 78/137 (56%), Gaps = 4/137 (2%)
Query: 5 IRIIGIDPGLRRTGWGIVDVA----GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
+R+ GID G TG+G+V++ L ++GTI +++ RL +++ LT I
Sbjct: 1 MRVFGIDCGTEFTGYGVVEMDARARNSRLVHCAAGTIRLNKKEATPTRLVKIFGELTAQI 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
P+ A+E+VF + +A + LKLGQ R +A+L+ A PV EYAP +IK AV+G G
Sbjct: 61 TLHEPDVVAIEEVFFSANAKSALKLGQVRGVAMLAAATCGKPVVEYAPLSIKSAVVGYGL 120
Query: 121 GDKKQIHMMLKMLMPES 137
K+Q+ M+ L+
Sbjct: 121 AAKEQVQFMVMRLLALE 137
>gi|225872209|ref|YP_002753664.1| crossover junction endodeoxyribonuclease RuvC [Acidobacterium
capsulatum ATCC 51196]
gi|254767452|sp|C1F130|RUVC_ACIC5 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|225791927|gb|ACO32017.1| crossover junction endodeoxyribonuclease RuvC [Acidobacterium
capsulatum ATCC 51196]
Length = 171
Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats.
Identities = 54/180 (30%), Positives = 84/180 (46%), Gaps = 28/180 (15%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDN-------LCFVSSGTIVSCVRQSLAFRLCQLYEGLT 57
+RI GID G TG+GIV+ L ++ G I + +LA RL ++ L
Sbjct: 1 MRIFGIDCGSEITGYGIVECPDGTPRSGQPDLRLIAFGGIRPAKKLTLAERLAFVHRELL 60
Query: 58 DVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIG 117
+ +P+ AVE+VF + +A + LKLG R +A+L+ A A +P++EYAP TIK V G
Sbjct: 61 TQLAAHQPDLVAVEEVFYSVNAKSALKLGHVRGVALLAAATAGLPIAEYAPLTIKSTVTG 120
Query: 118 VGHGDKKQIHMMLKMLMPESFFKGK-----------DAADALAIAVCHAYHANSGYYKIA 166
G K+Q+ M+ L+ CH +HA + + +
Sbjct: 121 YGLAQKEQVQFMVARLLHMPEPPEPADAADALAIAI----------CHIHHAQTIQAQQS 170
>gi|300087334|ref|YP_003757856.1| crossover junction endodeoxyribonuclease RuvC [Dehalogenimonas
lykanthroporepellens BL-DC-9]
gi|299527067|gb|ADJ25535.1| crossover junction endodeoxyribonuclease RuvC [Dehalogenimonas
lykanthroporepellens BL-DC-9]
Length = 166
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 51/136 (37%), Positives = 80/136 (58%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+R++GIDPG R G+GI+D G +L FV SGT+ + + RL +Y L +I ++
Sbjct: 1 MRVLGIDPGTRCLGYGIIDADGADLTFVISGTVKCADKTPMPERLKYIYSELVAIITRYQ 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ AA+E F+ ++A + L LG+A+A+A+L+ A A + V EY P IK V G G K
Sbjct: 61 PQCAAIETPFMAENARSALTLGKAQAVAVLASANAGLEVYEYPPARIKSHVAGFGASAKD 120
Query: 125 QIHMMLKMLMPESFFK 140
QI M+ + + +
Sbjct: 121 QIIRMVTLQLNLAQPP 136
>gi|297243468|ref|ZP_06927400.1| Holliday junction resolvasome, endonuclease subunit [Gardnerella
vaginalis AMD]
gi|296888513|gb|EFH27253.1| Holliday junction resolvasome, endonuclease subunit [Gardnerella
vaginalis AMD]
Length = 193
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 42/139 (30%), Positives = 70/139 (50%), Gaps = 1/139 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+ I+G+DPGL R G G+++ L F+ + S S RL ++Y GL + I+ +
Sbjct: 1 MMILGVDPGLTRCGVGVIEAGVSRRLSFIHVDVLRSEPDLSQDLRLLKIYNGLVEKIERF 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
P+ ++E+VF ++ L Q IA+L+ A IPV+ + P +K AV G G K
Sbjct: 61 SPDTVSIERVFAQENRNTVLGTAQVAGIAMLAAAQRNIPVALHTPTEVKLAVAGNGKAQK 120
Query: 124 KQIHMMLKMLMPESFFKGK 142
Q+ M+ L+ +
Sbjct: 121 PQVERMVARLLGLNVLPTP 139
>gi|218438641|ref|YP_002376970.1| Crossover junction endodeoxyribonuclease [Cyanothece sp. PCC 7424]
gi|218171369|gb|ACK70102.1| Crossover junction endodeoxyribonuclease [Cyanothece sp. PCC 7424]
Length = 162
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 32/148 (21%), Positives = 66/148 (44%), Gaps = 1/148 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
R +G+DPG+ R GW ++D + GTI + + RL ++ +++++ ++
Sbjct: 4 RWLGLDPGIARIGWAVLDNDEQTTPILLDYGTIETSKQCPTPQRLLEIETDISELLSEFK 63
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
PE+ A+E F ++ A + QA + L + + K + G K+
Sbjct: 64 PEKVAIEMPFFSRQIKAAGGVIQALGVLNLVIYRELKIIPILLHQSSWKCHLDHGRATKE 123
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAV 152
++ +++ + D DA+AIA
Sbjct: 124 EVAEVIQSIFHLETLPIDDTVDAIAIAY 151
>gi|299137113|ref|ZP_07030296.1| crossover junction endodeoxyribonuclease RuvC [Acidobacterium sp.
MP5ACTX8]
gi|298601628|gb|EFI57783.1| crossover junction endodeoxyribonuclease RuvC [Acidobacterium sp.
MP5ACTX8]
Length = 167
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 49/138 (35%), Positives = 82/138 (59%), Gaps = 4/138 (2%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGD----NLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
+R+ G+D G TG+G+V+V L ++ +G + + S A RL Q+Y L ++
Sbjct: 1 MRVFGVDCGTEFTGYGVVEVDDSARTPKLRYLCAGAVKLSKKDSTAMRLAQVYSELIALM 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
+ W+PE A+E+VF + +A + LKLGQ R +A+L+ A + V+EYAP +IK +V+G G
Sbjct: 61 QLWQPEMVAIEEVFFSANAKSALKLGQVRGVAMLAAANCGLTVAEYAPLSIKSSVVGYGL 120
Query: 121 GDKKQIHMMLKMLMPESF 138
K+Q+ M+ L+
Sbjct: 121 AAKEQVQFMVARLLELDE 138
>gi|304389422|ref|ZP_07371385.1| crossover junction endoribonuclease subunit C [Mobiluncus curtisii
subsp. curtisii ATCC 35241]
gi|304327232|gb|EFL94467.1| crossover junction endoribonuclease subunit C [Mobiluncus curtisii
subsp. curtisii ATCC 35241]
Length = 213
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 38/137 (27%), Positives = 69/137 (50%), Gaps = 1/137 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R++GIDPG+ R G G+VD V + S + FRL ++ +G+ + I +
Sbjct: 1 MRVLGIDPGITRCGIGVVDFDTSRRCTLVYVDVVRSDPNTATQFRLLKISQGVAEAINRF 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
+P+ A+E+ F ++ + QA IA++ A +PV+ + P+ +K AV G G K
Sbjct: 61 QPDIVALERPFAKENRQSVATTMQAMGIAMVEAARQGLPVAVHTPSEVKAAVSGNGSASK 120
Query: 124 KQIHMMLKMLMPESFFK 140
Q+ M+ ++
Sbjct: 121 AQVQAMVARILRLDKPP 137
>gi|213421205|ref|ZP_03354271.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
serovar Typhi str. E01-6750]
Length = 166
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 46/128 (35%), Positives = 76/128 (59%), Gaps = 1/128 (0%)
Query: 14 LRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQV 73
R TG+G++ G L ++ SG I + L RL +Y G+T++I ++P+ A+EQV
Sbjct: 4 SRITGYGVIRQVGRQLTYLGSGCIRT-KVDDLPSRLKLIYAGVTEIITQFQPDYFAIEQV 62
Query: 74 FVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKML 133
F+ K+A + LKLGQAR +AI++ +PV EYA +K+ V+G+G +K Q+ M++ L
Sbjct: 63 FMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQVQHMVRTL 122
Query: 134 MPESFFKG 141
+
Sbjct: 123 LKLPANPQ 130
>gi|15805467|ref|NP_294163.1| Holliday junction resolvase [Deinococcus radiodurans R1]
gi|20978757|sp|Q9RX75|RUVC_DEIRA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|6458122|gb|AAF10018.1|AE001903_6 Holliday junction resolvase [Deinococcus radiodurans R1]
Length = 179
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 40/134 (29%), Positives = 70/134 (52%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+R++GIDPGL G G+V+ + + + + RL L+E LT ++ +R
Sbjct: 1 MRVLGIDPGLANLGLGLVEGDVRRAKHLYHVCLTTESAWLMPRRLQYLHEELTRLLTEYR 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ A+E + + A K+GQA + L+ A A +P+ Y P +KK+++G G DK+
Sbjct: 61 PDAVAIEDQILRRQADVAFKVGQAFGVVQLACAQAGVPIHAYGPMQVKKSLVGTGRADKE 120
Query: 125 QIHMMLKMLMPESF 138
Q+ M+K +
Sbjct: 121 QVIYMVKASLGIRE 134
>gi|154707139|ref|YP_001423841.1| Holliday junction resolvase [Coxiella burnetii Dugway 5J108-111]
gi|164686123|ref|ZP_01946975.2| crossover junction endodeoxyribonuclease RuvC [Coxiella burnetii
'MSU Goat Q177']
gi|212219279|ref|YP_002306066.1| Holliday junction resolvase [Coxiella burnetii CbuK_Q154]
gi|189046062|sp|A9KF42|RUVC_COXBN RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|226698750|sp|B6J504|RUVC_COXB1 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|154356425|gb|ABS77887.1| crossover junction endodeoxyribonuclease [Coxiella burnetii Dugway
5J108-111]
gi|164601688|gb|EAX32393.2| crossover junction endodeoxyribonuclease RuvC [Coxiella burnetii
'MSU Goat Q177']
gi|212013541|gb|ACJ20921.1| crossover junction endodeoxyribonuclease [Coxiella burnetii
CbuK_Q154]
Length = 172
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 58/139 (41%), Positives = 80/139 (57%), Gaps = 2/139 (1%)
Query: 1 MRKSIRII-GIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDV 59
M RII GIDPG R TG+GI+ G ++ G I + SL FRL Q+ L D+
Sbjct: 1 MDNPRRIIIGIDPGSRITGYGIIWSQGSKQGCIAFGQIKTD-NDSLNFRLHQIERELRDL 59
Query: 60 IKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVG 119
I RP EAA+EQVF + + LKLGQAR A+++ A +PV+EY+ IK+AV+G G
Sbjct: 60 ILIHRPHEAAIEQVFTFHNHQSALKLGQARGAALVATAACALPVAEYSARQIKQAVVGYG 119
Query: 120 HGDKKQIHMMLKMLMPESF 138
K Q+ M+ +L+
Sbjct: 120 AATKAQVQHMVHLLLQLEK 138
>gi|226306410|ref|YP_002766370.1| Holliday junction endonuclease RuvC [Rhodococcus erythropolis PR4]
gi|259495692|sp|C0ZZ46|RUVC_RHOE4 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|226185527|dbj|BAH33631.1| Holliday junction endonuclease RuvC [Rhodococcus erythropolis PR4]
Length = 189
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 39/134 (29%), Positives = 69/134 (51%), Gaps = 1/134 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVD-VAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R++G+DPGL R G G+VD G + ++ + + L RL ++ + I+ +
Sbjct: 1 MRVLGVDPGLTRCGLGVVDGSNGRKVRPIAVDVVRTPPEMDLGSRLLRISDAAELWIEQY 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
+PE A+E+VF + + QA + L+ A IPV + P+ +K AV G G+ DK
Sbjct: 61 KPEVVAIERVFAQHNVSTAMGTAQAGGVVALAAARRGIPVCFHTPSEVKAAVTGSGNADK 120
Query: 124 KQIHMMLKMLMPES 137
Q+ M+ ++
Sbjct: 121 AQVTAMVTRILNLK 134
>gi|283783301|ref|YP_003374055.1| crossover junction endodeoxyribonuclease RuvC [Gardnerella
vaginalis 409-05]
gi|283442088|gb|ADB14554.1| crossover junction endodeoxyribonuclease RuvC [Gardnerella
vaginalis 409-05]
Length = 193
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 42/139 (30%), Positives = 70/139 (50%), Gaps = 1/139 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+ I+G+DPGL R G G+++ L F+ + S S RL ++Y GL + I+ +
Sbjct: 1 MMILGVDPGLTRCGVGVIEAGVSRRLSFIHVDVLRSEPDLSQDLRLLKIYNGLVEKIERF 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
P+ ++E+VF ++ L Q IA+L+ A IPV+ + P +K AV G G K
Sbjct: 61 SPDTVSIERVFAQENRNTVLGTAQVAGIAMLAAAQRNIPVALHTPTEVKLAVAGNGKAQK 120
Query: 124 KQIHMMLKMLMPESFFKGK 142
Q+ M+ L+ +
Sbjct: 121 PQVERMVARLLGLNVLPTP 139
>gi|298346873|ref|YP_003719560.1| crossover junction endodeoxyribonuclease [Mobiluncus curtisii ATCC
43063]
gi|298236934|gb|ADI68066.1| crossover junction endodeoxyribonuclease [Mobiluncus curtisii ATCC
43063]
Length = 213
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 38/137 (27%), Positives = 69/137 (50%), Gaps = 1/137 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R++GIDPG+ R G G+VD V + S + FRL ++ +G+ + I +
Sbjct: 1 MRVLGIDPGITRCGIGVVDFDTSRRCTLVYVDVVRSDPNTATQFRLLKISQGVAEAINRF 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
+P+ A+E+ F ++ + QA IA++ A +PV+ + P+ +K AV G G K
Sbjct: 61 QPDIVALERPFAKENRQSVATTMQAMGIAMVEAARQGLPVAVHTPSEVKAAVSGNGSASK 120
Query: 124 KQIHMMLKMLMPESFFK 140
Q+ M+ ++
Sbjct: 121 AQVQAMVARILRLDKPP 137
>gi|118617339|ref|YP_905671.1| Holliday junction resolvase [Mycobacterium ulcerans Agy99]
gi|183982123|ref|YP_001850414.1| crossover junction endodeoxyribonuclease RuvC [Mycobacterium
marinum M]
gi|166233272|sp|A0PPD1|RUVC_MYCUA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|238690932|sp|B2HN61|RUVC_MYCMM RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|118569449|gb|ABL04200.1| crossover junction endodeoxyribonuclease RuvC [Mycobacterium
ulcerans Agy99]
gi|183175449|gb|ACC40559.1| crossover junction endodeoxyribonuclease RuvC [Mycobacterium
marinum M]
Length = 184
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 46/156 (29%), Positives = 80/156 (51%), Gaps = 2/156 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R++G+DPGL R G +++ G L + + + L+ RL + E + ++
Sbjct: 1 MRVMGVDPGLTRCGLSLIESGQGRQLTALDVDVVRTPSDAPLSSRLLAINEAVEHWLETH 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
RP+ A+E+VF ++ + QA + L+ A + V + P+ +K AV G G DK
Sbjct: 61 RPDVVAIERVFSQQNVKTVMGTAQAGGVVALAAAKRGVEVHFHTPSEVKAAVTGNGTADK 120
Query: 124 KQIHMMLKMLMPES-FFKGKDAADALAIAVCHAYHA 158
Q+ M+ ++ DAADALA+A+CH + A
Sbjct: 121 AQVTAMVTRILALQTKPTPADAADALALAICHCWRA 156
>gi|229491983|ref|ZP_04385800.1| crossover junction endodeoxyribonuclease RuvC [Rhodococcus
erythropolis SK121]
gi|229321115|gb|EEN86919.1| crossover junction endodeoxyribonuclease RuvC [Rhodococcus
erythropolis SK121]
Length = 189
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 39/134 (29%), Positives = 69/134 (51%), Gaps = 1/134 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVD-VAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R++G+DPGL R G G+VD G + ++ + + L RL ++ + I+ +
Sbjct: 1 MRVLGVDPGLTRCGLGVVDGSNGRKVRPIAVDVVRTPAEMDLGSRLLRISDAAELWIEQY 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
+PE A+E+VF + + QA + L+ A IPV + P+ +K AV G G+ DK
Sbjct: 61 KPEVVAIERVFAQHNVSTAMGTAQAGGVVALAAARRGIPVCFHTPSEVKAAVTGSGNADK 120
Query: 124 KQIHMMLKMLMPES 137
Q+ M+ ++
Sbjct: 121 AQVTAMVTRILNLK 134
>gi|62390543|ref|YP_225945.1| Holliday junction resolvase [Corynebacterium glutamicum ATCC 13032]
gi|41325881|emb|CAF20044.1| CROSSOVER JUNCTION ENDODEOXYRIBONUCLEASE [Corynebacterium
glutamicum ATCC 13032]
Length = 213
Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats.
Identities = 52/153 (33%), Positives = 82/153 (53%), Gaps = 2/153 (1%)
Query: 8 IGIDPGLRRTGWGIVDVAGDNLCF-VSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
+GIDPGL R G +V + VS G + + LA RL +L + + + + + P+
Sbjct: 1 MGIDPGLTRCGLSVVQAGRGRTVYPVSVGVVRTPPDAELAERLLRLSKAVGEWMDEYTPD 60
Query: 67 EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
A+E+VF + + A + IL+ A +PV Y P+ +KKA+ G G DKKQ+
Sbjct: 61 VIAIERVFERGNVSTVMNTAHAVGVLILAAAERGLPVHMYTPSEVKKAISGNGRADKKQM 120
Query: 127 HMMLKMLMPE-SFFKGKDAADALAIAVCHAYHA 158
+M+ ++ K DAADAL++AVCH + A
Sbjct: 121 TVMITRILGLGEPPKPADAADALSLAVCHCWRA 153
>gi|88856267|ref|ZP_01130927.1| Holliday junction resolvase [marine actinobacterium PHSC20C1]
gi|88814586|gb|EAR24448.1| Holliday junction resolvase [marine actinobacterium PHSC20C1]
Length = 201
Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats.
Identities = 44/136 (32%), Positives = 71/136 (52%), Gaps = 1/136 (0%)
Query: 4 SIRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
++R+IGIDPGL R G G+VDVA V G + + +L RL + EG+ VI
Sbjct: 2 ALRVIGIDPGLTRCGIGVVDVAADRRATLVHVGVVRTPPEMALEERLRHIGEGIDAVIAE 61
Query: 63 WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
+ P + A+E+VF + + QA +A+ A I V+ + P +K A+ G G +
Sbjct: 62 YAPHQLALERVFAQLNVSTVMGTAQASGVAMYVAAQRGIAVTMHTPTEVKLAITGYGGAE 121
Query: 123 KKQIHMMLKMLMPESF 138
KKQ+ M+ ++ +
Sbjct: 122 KKQVGAMVARVLGLAE 137
>gi|260578828|ref|ZP_05846735.1| Holliday junction nuclease [Corynebacterium jeikeium ATCC 43734]
gi|97274756|sp|Q4JVD7|RUVC_CORJK RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|258603126|gb|EEW16396.1| Holliday junction nuclease [Corynebacterium jeikeium ATCC 43734]
Length = 163
Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats.
Identities = 34/134 (25%), Positives = 64/134 (47%), Gaps = 1/134 (0%)
Query: 8 IGIDPGLRRTGWGIVDVAGDNLCF-VSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
+GIDPGL R G +V + V+ G + + + RL +L++ + +++P
Sbjct: 1 MGIDPGLTRCGLSVVQAGKGRAVYPVAVGVVRTPSDMPVEQRLNKLFDAVEQWFDDYQPH 60
Query: 67 EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
A+E+VF + + A + +L+ A + V Y P+ +KK++ G G DK Q+
Sbjct: 61 VVALERVFERSNVSTVMNTAHASGVLMLAAARRGVDVHMYTPSEVKKSISGNGRADKAQM 120
Query: 127 HMMLKMLMPESFFK 140
M+ ++ S
Sbjct: 121 TRMITRILGLSEAP 134
>gi|113953230|ref|YP_730174.1| Holliday junction resolvase [Synechococcus sp. CC9311]
gi|123327890|sp|Q0IBJ8|RUVC_SYNS3 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|113880581|gb|ABI45539.1| Crossover junction endodeoxyribonuclease ruvC (Hollidayjunction
nuclease ruvC) (Holliday juction resolvase ruvC)
[Synechococcus sp. CC9311]
Length = 160
Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats.
Identities = 41/144 (28%), Positives = 72/144 (50%), Gaps = 7/144 (4%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDN------LCFVSSGTIVSCVRQSLAFRLCQLYEGLTD 58
+RI+GIDPGL R G+G++DV + G I + +S R+ ++ L
Sbjct: 1 MRILGIDPGLARVGYGVIDVEPRKGKQEGSQRMIDCGIIRTDPGRSEGERMVEIARDLRQ 60
Query: 59 VIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGV 118
+I+ +PE A+VE+ F + + + QAR + I++ A +P+ E+ P IK+A+ G
Sbjct: 61 IIRIHQPELASVEKFFFYRSSNTIAVV-QARGVLIMTLARFGLPIVEFPPMQIKQALTGH 119
Query: 119 GHGDKKQIHMMLKMLMPESFFKGK 142
GH DK ++ + +
Sbjct: 120 GHADKDEVLEAVMRELNLDTPPRP 143
>gi|83943910|ref|ZP_00956367.1| Holliday junction resolvase [Sulfitobacter sp. EE-36]
gi|83845157|gb|EAP83037.1| Holliday junction resolvase [Sulfitobacter sp. EE-36]
Length = 168
Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats.
Identities = 88/165 (53%), Positives = 110/165 (66%), Gaps = 1/165 (0%)
Query: 4 SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
IR+IGIDPGLR GWG++DVAG + V++G I LA RL L+ LT ++
Sbjct: 1 MIRVIGIDPGLRNMGWGVIDVAGSRITHVANG-ICQSEGADLATRLLSLHAQLTRIMVTC 59
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
RP+ AAVEQ FVNKD TLKLGQAR IA+L PA A + V EYAPNT+KK V+GVGH DK
Sbjct: 60 RPDAAAVEQTFVNKDGAGTLKLGQARGIAMLVPAQAGLAVGEYAPNTVKKTVVGVGHADK 119
Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
Q+ M++M +P + G DAADALAIA+CHA+H + A
Sbjct: 120 GQVLHMVRMQLPGAEIAGPDAADALAIAICHAHHGGASTLAQAVA 164
>gi|29654858|ref|NP_820550.1| Holliday junction resolvase [Coxiella burnetii RSA 493]
gi|161830597|ref|YP_001597404.1| Holliday junction resolvase [Coxiella burnetii RSA 331]
gi|212212081|ref|YP_002303017.1| Holliday junction resolvase [Coxiella burnetii CbuG_Q212]
gi|44888459|sp|Q83BE3|RUVC_COXBU RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|189046063|sp|A9N9A1|RUVC_COXBR RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|226698751|sp|B6IYU4|RUVC_COXB2 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|29542127|gb|AAO91064.1| crossover junction endodeoxyribonuclease [Coxiella burnetii RSA
493]
gi|161762464|gb|ABX78106.1| crossover junction endodeoxyribonuclease RuvC [Coxiella burnetii
RSA 331]
gi|212010491|gb|ACJ17872.1| crossover junction endodeoxyribonuclease [Coxiella burnetii
CbuG_Q212]
Length = 172
Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats.
Identities = 57/139 (41%), Positives = 79/139 (56%), Gaps = 2/139 (1%)
Query: 1 MRKSIRII-GIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDV 59
M RII GIDPG R TG+GI+ G ++ G I + SL FRL Q+ L D+
Sbjct: 1 MDNPRRIIIGIDPGSRITGYGIIWSQGSKQGCIAFGQIKTD-NDSLNFRLHQIERELRDL 59
Query: 60 IKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVG 119
I RP EAA+EQVF + + LKLGQAR A+++ A + V+EY+ IK+AV+G G
Sbjct: 60 ILIHRPHEAAIEQVFTFHNHQSALKLGQARGAALVATAACALSVAEYSARQIKQAVVGYG 119
Query: 120 HGDKKQIHMMLKMLMPESF 138
K Q+ M+ +L+
Sbjct: 120 AATKAQVQHMVHLLLQLEK 138
>gi|312196176|ref|YP_004016237.1| crossover junction endodeoxyribonuclease RuvC [Frankia sp. EuI1c]
gi|311227512|gb|ADP80367.1| crossover junction endodeoxyribonuclease RuvC [Frankia sp. EuI1c]
Length = 174
Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats.
Identities = 44/138 (31%), Positives = 68/138 (49%), Gaps = 2/138 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDV--AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
+R++G+DPGL R G G+VD AG V G + + +A RL + + +
Sbjct: 1 MRVMGVDPGLTRCGLGVVDGGGAGRRAALVEVGVARTPATEDVAIRLRDISVQIDLWLDR 60
Query: 63 WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
RP+ AVE+VF + + Q A+AI+ A +PV+ Y P+ +K AV G G D
Sbjct: 61 HRPDAVAVERVFSQANVRTVMGTAQVGAVAIVLAARRGLPVALYTPSEVKAAVTGSGRAD 120
Query: 123 KKQIHMMLKMLMPESFFK 140
K Q+ M+ L+
Sbjct: 121 KAQVTFMISKLLDLDTPP 138
>gi|119716612|ref|YP_923577.1| Holliday junction endonuclease RuvC [Nocardioides sp. JS614]
gi|166233275|sp|A1SJA5|RUVC_NOCSJ RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|119537273|gb|ABL81890.1| Holliday junction endonuclease RuvC [Nocardioides sp. JS614]
Length = 177
Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats.
Identities = 50/166 (30%), Positives = 81/166 (48%), Gaps = 3/166 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVD-VAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R++GIDPGL R G G+VD G L V + + + RL + G+ I+
Sbjct: 1 MRVLGIDPGLTRCGMGVVDGSVGRPLTLVDVNVLRTSADLPVPERLVTIERGVEAWIEEH 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
P+ A+E+VF D + QA +A++ A +P+ + P+ +K AV G G K
Sbjct: 61 APDAVAIERVFARSDVSTVMGTAQASGVAMVVAARRGLPIGLHTPSEVKAAVSGNGRAGK 120
Query: 124 KQIHMMLKMLMPES-FFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
Q+ M+ ++ K DAADALA+A+ H + +I +
Sbjct: 121 AQVGAMVTRILRLDVMPKPADAADALALAITHIWRGG-AQARIDAA 165
>gi|15827158|ref|NP_301421.1| Holliday junction resolvase [Mycobacterium leprae TN]
gi|221229636|ref|YP_002503052.1| Holliday junction resolvase [Mycobacterium leprae Br4923]
gi|730697|sp|P40834|RUVC_MYCLE RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|466822|gb|AAA17097.1| ruvC [Mycobacterium leprae]
gi|13092706|emb|CAC29989.1| crossover junction endodeoxyribonuclease [Mycobacterium leprae]
gi|219932743|emb|CAR70574.1| crossover junction endodeoxyribonuclease [Mycobacterium leprae
Br4923]
Length = 188
Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats.
Identities = 44/167 (26%), Positives = 82/167 (49%), Gaps = 3/167 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVD-VAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R++G+DPGL R G +V+ G + + + + ++ RL + + + +
Sbjct: 1 MRVMGVDPGLTRCGLSVVENGRGSQVVALDVDVVRTPSDAPVSKRLLAVSDVVEHWLDAH 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
P+ A+E+VF ++ + QA + L+ A I V + P+ +K AV G G +K
Sbjct: 61 HPDVMAIERVFSQQNVSTVMGTAQAGGVIALAAARRGIDVHFHTPSEVKAAVTGNGAANK 120
Query: 124 KQIHMMLKMLMPES-FFKGKDAADALAIAVCHAYHANSGYYKIASQD 169
Q+ M+ ++ DAADALA+A+CH + A ++A +
Sbjct: 121 AQVTAMVTRILALQAKPTPADAADALALAICHCWRA-PMIARMAEAE 166
>gi|311739558|ref|ZP_07713393.1| crossover junction endoribonuclease subunit C [Corynebacterium
pseudogenitalium ATCC 33035]
gi|311305374|gb|EFQ81442.1| crossover junction endoribonuclease subunit C [Corynebacterium
pseudogenitalium ATCC 33035]
Length = 221
Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats.
Identities = 52/156 (33%), Positives = 81/156 (51%), Gaps = 2/156 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCF-VSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R++GIDPGL R G +V VS G + + + L RL +L + + ++
Sbjct: 39 MRVMGIDPGLTRCGLSVVQAGRGRAILPVSVGVVRTPSDKDLTERLLRLSVAAKEWMDDY 98
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
P+ A+E+VF ++ + +L+ A IPV Y P+ +KKA+ G G DK
Sbjct: 99 SPDVVAIERVFERGQVSTVMQTAHVVGVLVLAAAERDIPVYMYTPSEVKKAISGNGRADK 158
Query: 124 KQIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHA 158
KQ+ M+ ++ K DAADALA+AVCH + A
Sbjct: 159 KQMTTMITRILGLTEPPKPADAADALALAVCHCWRA 194
>gi|256832602|ref|YP_003161329.1| crossover junction endodeoxyribonuclease RuvC [Jonesia
denitrificans DSM 20603]
gi|256686133|gb|ACV09026.1| crossover junction endodeoxyribonuclease RuvC [Jonesia
denitrificans DSM 20603]
Length = 190
Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats.
Identities = 40/135 (29%), Positives = 72/135 (53%), Gaps = 1/135 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVD-VAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R++G+DPGL R G G+VD +AG V+ G S +S+ RL + + L + +
Sbjct: 1 MRVLGVDPGLTRCGIGVVDSIAGRRARLVAVGVARSTHTESIDVRLLAISQQLDEWLDRH 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
P+ A+E+VF + + Q +A+++ A +PV+ + P+ +K AV G G K
Sbjct: 61 IPDVVAIERVFAQNNLSTVMGTAQVAGLAMVAAAKRGVPVALHTPSEVKAAVTGHGGAHK 120
Query: 124 KQIHMMLKMLMPESF 138
+Q+ M+ ++ S
Sbjct: 121 EQVQRMVANILGLSQ 135
>gi|116329113|ref|YP_798833.1| crossover junction endoribonuclease [Leptospira borgpetersenii
serovar Hardjo-bovis L550]
gi|116121857|gb|ABJ79900.1| Crossover junction endoribonuclease [Leptospira borgpetersenii
serovar Hardjo-bovis L550]
Length = 166
Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats.
Identities = 46/162 (28%), Positives = 83/162 (51%), Gaps = 1/162 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RIIGIDPG R G+ I++ + ++ GT+ L L +GLT+++K ++
Sbjct: 1 MRIIGIDPGSHRAGYAILEKTASKIRILAYGTVEVPSGTPSPNNLLVLRKGLTEILKEFK 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P A+VE++F K+ ++ ++R + +++ A I + E + IKK G G+ DKK
Sbjct: 61 PSIASVEEMFFAKNKKTASRVFESRGVLLVTLAEMNIQILEPTVSQIKKGTTGSGNADKK 120
Query: 125 QI-HMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
QI + +L + D+ DA+A A ++S +
Sbjct: 121 QIRQALKLLLDIDLLKGHDDSWDAVAAAYVGLSMSSSPLFAA 162
>gi|163745817|ref|ZP_02153176.1| Holliday junction resolvase [Oceanibulbus indolifex HEL-45]
gi|161380562|gb|EDQ04972.1| Holliday junction resolvase [Oceanibulbus indolifex HEL-45]
Length = 168
Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats.
Identities = 87/165 (52%), Positives = 108/165 (65%), Gaps = 1/165 (0%)
Query: 4 SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
IR+IGIDPGLR GWG++DV+G + V++G I + LA RL L+ LT V+ +
Sbjct: 1 MIRVIGIDPGLRNLGWGVIDVSGSRIAHVANG-ICHSEGEDLAARLLSLHGQLTRVLATY 59
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
RP AAVEQ FVNKD TLKLGQAR IA+L PA + V EYAPN +KK V+GVGH DK
Sbjct: 60 RPGAAAVEQTFVNKDGAGTLKLGQARGIAMLVPAQFGLTVGEYAPNKVKKTVVGVGHADK 119
Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
Q+ M++M MP G DAADALAIA+CHA+H + A
Sbjct: 120 GQVAHMVRMQMPGIEIAGPDAADALAIAICHAHHGGASTLAQAVA 164
>gi|124022603|ref|YP_001016910.1| Holliday junction resolvase [Prochlorococcus marinus str. MIT 9303]
gi|166233282|sp|A2C835|RUVC_PROM3 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|123962889|gb|ABM77645.1| Crossover junction endodeoxyribonuclease RuvC [Prochlorococcus
marinus str. MIT 9303]
Length = 154
Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats.
Identities = 41/138 (29%), Positives = 72/138 (52%), Gaps = 1/138 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPGL R G+G++D + + G I + R+ ++ L +I+ W+
Sbjct: 1 MRILGIDPGLARVGYGVIDTSNGQQQMLDCGIIRTNPGIDDGVRMVEIASDLRQLIRRWK 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ AAVE+ F + T+ + QAR + I++ A R+P+ E+ P IK A+ G GH +K
Sbjct: 61 PQLAAVEKFFFYRS-STTISVVQARGVIIMTLARFRVPMVEFPPMQIKLALAGSGHAEKD 119
Query: 125 QIHMMLKMLMPESFFKGK 142
++ + +
Sbjct: 120 EVLDAVMRELNLDQPPRP 137
>gi|269958336|ref|YP_003328123.1| Holliday (crossover) junction endodeoxyribonuclease [Anaplasma
centrale str. Israel]
gi|269848165|gb|ACZ48809.1| Holliday (crossover) junction endodeoxyribonuclease [Anaplasma
centrale str. Israel]
Length = 162
Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats.
Identities = 55/158 (34%), Positives = 87/158 (55%), Gaps = 3/158 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+ IGIDPGL TGWG+V ++C + SG I + + +L ++Y L V+ +
Sbjct: 1 MITIGIDPGLEFTGWGVVSSLDSHSICLLDSGVISTRGISKESEKLYKIYVSLLSVLGMY 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
R EEA++E+VFVN + +++ L ARA + +S I + EY+ IKK + G G K
Sbjct: 61 RIEEASIEKVFVNSNPRSSMSLCYARAASTISVMSKGINIYEYSSTAIKKCITGNGMAPK 120
Query: 124 KQIHMMLKM-LMPESFFK-GKDAADALAIAVCHAYHAN 159
Q+ M++ L S K ++DA+A A+CH Y+
Sbjct: 121 DQVLFMVRNSLGIGSDIKINNHSSDAIAAALCHIYNTR 158
>gi|284928974|ref|YP_003421496.1| Holliday junction endonuclease RuvC [cyanobacterium UCYN-A]
gi|284809433|gb|ADB95138.1| Holliday junction endonuclease RuvC [cyanobacterium UCYN-A]
Length = 162
Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats.
Identities = 38/149 (25%), Positives = 60/149 (40%), Gaps = 2/149 (1%)
Query: 6 RI-IGIDPGLRRTGWGIVDVAGDNLCF-VSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
RI +GIDPGL TGW I+ + V G I + + S + RL ++ L +++ +
Sbjct: 4 RIWLGIDPGLAITGWAILKAHTKTIPLIVDYGVIQTSKKLSTSQRLLEIEHDLVELLNEF 63
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
++E F N+ A + QA + L + K IG G K
Sbjct: 64 NFYGISIEMPFFNRTIKAAGGVIQAVGVINLVCYRETQIQPVFLHQASWKRHIGSGRATK 123
Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAV 152
+ + L D+ DA+AIA
Sbjct: 124 DSVAQTVSQLFNLQTIPIDDSVDAIAIAY 152
>gi|33863407|ref|NP_894967.1| Holliday junction resolvase [Prochlorococcus marinus str. MIT 9313]
gi|44888414|sp|Q7V6L9|RUVC_PROMM RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|33640856|emb|CAE21311.1| Crossover junction endodeoxyribonuclease RuvC [Prochlorococcus
marinus str. MIT 9313]
Length = 154
Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats.
Identities = 41/138 (29%), Positives = 72/138 (52%), Gaps = 1/138 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPG+ R G+G++D + + G I + R+ ++ L +I+ W+
Sbjct: 1 MRILGIDPGIARVGYGVIDTSNGQQQMLDCGIIRTNPGIDDGERMVEIASDLRQLIRRWK 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ AAVE+ F + T+ + QAR + I++ A R+PV E+ P IK A+ G GH +K
Sbjct: 61 PQLAAVEKFFFYRS-STTISVVQARGVIIMTLARFRVPVMEFPPMQIKLALAGSGHAEKD 119
Query: 125 QIHMMLKMLMPESFFKGK 142
++ + +
Sbjct: 120 EVLDAVMRELNLDQPPRP 137
>gi|258653557|ref|YP_003202713.1| crossover junction endodeoxyribonuclease RuvC [Nakamurella
multipartita DSM 44233]
gi|258556782|gb|ACV79724.1| crossover junction endodeoxyribonuclease RuvC [Nakamurella
multipartita DSM 44233]
Length = 181
Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats.
Identities = 41/135 (30%), Positives = 68/135 (50%), Gaps = 1/135 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R++G+DPGL R G G+VD G V + + LA RL Q+ + ++
Sbjct: 1 MRVLGVDPGLTRCGIGVVDGGPGLPPRAVEVMVVRTPADAPLAERLLQIAVRVEAMMDRH 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
+P+ A+E+VF + + QA + L+ A IPV+ + P+ +K AV G G+ DK
Sbjct: 61 QPDTVAIERVFSQHNVRTVMGTAQASGVVALAAARRGIPVAWHTPSEVKAAVSGHGNADK 120
Query: 124 KQIHMMLKMLMPESF 138
Q+ M+ L+
Sbjct: 121 AQVTAMITRLLKLPE 135
>gi|72382538|ref|YP_291893.1| Holliday junction resolvase [Prochlorococcus marinus str. NATL2A]
gi|110282921|sp|Q46JY8|RUVC_PROMT RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|72002388|gb|AAZ58190.1| Holliday junction endonuclease RuvC [Prochlorococcus marinus str.
NATL2A]
Length = 154
Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats.
Identities = 45/136 (33%), Positives = 70/136 (51%), Gaps = 1/136 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RIIGIDPGL R G+GI+D + G I + Q RL ++ L+ +IK W
Sbjct: 1 MRIIGIDPGLARVGYGIIDEIEGKKIMIDCGIIETKSTQKEEERLVEISNDLSSIIKKWN 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P AAVE+ F + T+ + QAR + +++ ++P+ E+ P IK AV G GH DK
Sbjct: 61 PNSAAVEKFFFYRS-STTISVVQARGVIMMTLGKYKLPIQEFPPMQIKLAVTGYGHSDKN 119
Query: 125 QIHMMLKMLMPESFFK 140
+ + + +
Sbjct: 120 DVLNSVMHELNVTSPP 135
>gi|227549153|ref|ZP_03979202.1| Holliday junction resolvase [Corynebacterium lipophiloflavum DSM
44291]
gi|227078773|gb|EEI16736.1| Holliday junction resolvase [Corynebacterium lipophiloflavum DSM
44291]
Length = 165
Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats.
Identities = 53/162 (32%), Positives = 85/162 (52%), Gaps = 2/162 (1%)
Query: 8 IGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
+GIDPGL R G IV G + ++ G + + L RL +L + + + +++P+
Sbjct: 1 MGIDPGLTRCGLSIVQAGRGRQVIPIAVGVVRTPAASELPQRLVRLSAAVREWLDDYQPD 60
Query: 67 EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
A+E++F + + A + IL+ A +PV Y P+ +KKA+ G G DKKQ+
Sbjct: 61 VIAMERIFERGNVSTVMHTAHAVGVLILAAAERGLPVHMYTPSEVKKAISGNGRADKKQM 120
Query: 127 HMMLKMLMPE-SFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
M+ ++ K DAADALAIAVCH + A +A+
Sbjct: 121 TTMITRILGLAEPPKPADAADALAIAVCHCWRAPLIARGLAA 162
>gi|315656669|ref|ZP_07909556.1| crossover junction endoribonuclease subunit C [Mobiluncus curtisii
subsp. holmesii ATCC 35242]
gi|315492624|gb|EFU82228.1| crossover junction endoribonuclease subunit C [Mobiluncus curtisii
subsp. holmesii ATCC 35242]
Length = 213
Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats.
Identities = 38/137 (27%), Positives = 69/137 (50%), Gaps = 1/137 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R++GIDPG+ R G G+VD V + S + FRL ++ +G+ + I +
Sbjct: 1 MRVLGIDPGITRCGIGVVDFDTSRRCTLVYVDVVRSDPNTATQFRLLKISQGVAEAINRF 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
+P+ A+E+ F ++ + QA IA++ A +PV+ + P+ +K AV G G K
Sbjct: 61 QPDIVALERPFAKENRQSVATTMQAMGIAMVEAARQGLPVAVHTPSEVKAAVSGNGSAAK 120
Query: 124 KQIHMMLKMLMPESFFK 140
Q+ M+ ++
Sbjct: 121 AQVQAMVARILRLDKPP 137
>gi|257068560|ref|YP_003154815.1| Holliday junction endonuclease RuvC [Brachybacterium faecium DSM
4810]
gi|256559378|gb|ACU85225.1| Holliday junction endonuclease RuvC [Brachybacterium faecium DSM
4810]
Length = 197
Score = 128 bits (321), Expect = 4e-28, Method: Composition-based stats.
Identities = 47/134 (35%), Positives = 69/134 (51%), Gaps = 1/134 (0%)
Query: 4 SIRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
++R++G+DPGL R G G+VD G V +G + S L RL + GL ++
Sbjct: 3 TMRVLGVDPGLTRCGIGVVDALGGRRARLVHAGVLRSESDAPLDQRLLTIARGLRAALEE 62
Query: 63 WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
+ P+ AVE+VF + + Q IA+L A IP + + P+ +K AV G G D
Sbjct: 63 FGPDAVAVERVFSQNNISTVMGTAQVSGIALLEAAERGIPAAMHTPSEVKAAVTGSGRAD 122
Query: 123 KKQIHMMLKMLMPE 136
KKQI ML L+
Sbjct: 123 KKQIQTMLVKLLGL 136
>gi|289523151|ref|ZP_06440005.1| crossover junction endodeoxyribonuclease RuvC [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
gi|289503694|gb|EFD24858.1| crossover junction endodeoxyribonuclease RuvC [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
Length = 165
Score = 128 bits (321), Expect = 4e-28, Method: Composition-based stats.
Identities = 42/138 (30%), Positives = 72/138 (52%), Gaps = 1/138 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ +GIDPG+ R G+G V+ G L ++ G I + S+ RL +Y+ + + I R
Sbjct: 1 MLCLGIDPGIGRVGFGYVNEEGSALSGLTFGCIDTDPDLSVQDRLNMIYDEVKNHINTIR 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ A+E++F ++ + QAR + +L A R+P+ E P+ +K AV G G K
Sbjct: 61 PDVLAMERLFFGQNLTTAENVWQARGVILLLAAQERLPIVEPTPSQVKMAVCGYGKASKS 120
Query: 125 QIHMMLKMLMPESF-FKG 141
Q+ M+K ++ K
Sbjct: 121 QVQEMVKCILSLESVPKP 138
>gi|285019191|ref|YP_003376902.1| holliday junction resolvasome, endonuclease subunit protein
[Xanthomonas albilineans GPE PC73]
gi|283474409|emb|CBA16910.1| putative holliday junction resolvasome, endonuclease subunit
protein [Xanthomonas albilineans]
Length = 207
Score = 128 bits (321), Expect = 4e-28, Method: Composition-based stats.
Identities = 64/159 (40%), Positives = 92/159 (57%), Gaps = 1/159 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAG-DNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+RI+GIDPG +RTG GI+DV V + RL +L GL +I+ +
Sbjct: 36 VRILGIDPGSQRTGVGIIDVDAAGRARHVYHAPLRLLGEGDFPQRLKRLLHGLDALIEEY 95
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
RP+E A+E+VF+ K A A LKLG AR AI + L +PV EYA IK A++G G +K
Sbjct: 96 RPQEVAIERVFMGKSADAALKLGHARGAAICAVVLRDLPVHEYAAKEIKLALVGKGAAEK 155
Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGY 162
+Q+ M+ +++ S DAADALA+A+ HA+ +
Sbjct: 156 QQVQHMVGLMLSLSGKLQADAADALAVAITHAHVRATAQ 194
>gi|254443446|ref|ZP_05056922.1| crossover junction endodeoxyribonuclease RuvC [Verrucomicrobiae
bacterium DG1235]
gi|198257754|gb|EDY82062.1| crossover junction endodeoxyribonuclease RuvC [Verrucomicrobiae
bacterium DG1235]
Length = 190
Score = 128 bits (321), Expect = 4e-28, Method: Composition-based stats.
Identities = 44/153 (28%), Positives = 75/153 (49%), Gaps = 1/153 (0%)
Query: 7 IIGIDPGLRRTGWGIVD-VAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDP LR TG +V+ +G + S T+ S+ L + + +++ +
Sbjct: 38 ILGIDPSLRGTGLAVVEFSSGGRSTLLRSETLKQKQSVSMPQCLGNICSRVLEILDTYEI 97
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQ ++ LG AR AI + A+ V EY P +K+AV+G G K+Q
Sbjct: 98 DVVALEQTIYVQNFQTAQILGAARGAAIAAAAMRGKEVFEYPPLRVKQAVVGHGRASKEQ 157
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHA 158
+ ++ L+ D +DA A+A+ HA+
Sbjct: 158 VAKTIRTLLGHGALLELDESDAAAVAMTHAFTG 190
>gi|297626361|ref|YP_003688124.1| Crossover junction endodeoxyribonuclease (Holliday junction
nuclease ) (Holliday junction resolvase)
[Propionibacterium freudenreichii subsp. shermanii
CIRM-BIA1]
gi|296922126|emb|CBL56694.1| Crossover junction endodeoxyribonuclease (Holliday junction
nuclease ) (Holliday junction resolvase)
[Propionibacterium freudenreichii subsp. shermanii
CIRM-BIA1]
Length = 203
Score = 128 bits (321), Expect = 4e-28, Method: Composition-based stats.
Identities = 43/132 (32%), Positives = 71/132 (53%), Gaps = 1/132 (0%)
Query: 8 IGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
+G+DPGL R G GIVD G FV+ G I + A+RL + EGL + +++P+
Sbjct: 1 MGVDPGLTRCGVGIVDGTPGARPQFVAVGVIRTDPHTEHAYRLLAIEEGLGEWFDHYQPQ 60
Query: 67 EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
++E+VF + +GQ IA++ A I V+ + P+ +K AV G G DK Q+
Sbjct: 61 AISIERVFAQHNLSTVTGIGQVAGIAMMLGARHGIDVALHTPSEVKSAVTGSGRADKAQV 120
Query: 127 HMMLKMLMPESF 138
+M+ ++ +
Sbjct: 121 GVMVAQVLHLAK 132
>gi|182414268|ref|YP_001819334.1| crossover junction endodeoxyribonuclease [Opitutus terrae PB90-1]
gi|177841482|gb|ACB75734.1| Crossover junction endodeoxyribonuclease [Opitutus terrae PB90-1]
Length = 200
Score = 128 bits (321), Expect = 4e-28, Method: Composition-based stats.
Identities = 47/153 (30%), Positives = 74/153 (48%), Gaps = 1/153 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
R++GIDP LR TG +++ A G + T+ R +A L +++ + +
Sbjct: 45 RVLGIDPSLRGTGLALIEFAPGRAPVLLRCQTVRVSARLPMAQALAEIHRAVLAFLDGTE 104
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
A+EQ ++ LG AR A+ AL PV EYAP +K+AV+G G K+
Sbjct: 105 VRHVALEQTIFVQNFQTAQILGAARGAAMAVAALQGRPVFEYAPLRVKQAVVGAGRASKE 164
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYH 157
Q+ + L+ D ADA +A+CHA+
Sbjct: 165 QMARTVMALLGHGRPLASDEADAAGVALCHAFT 197
>gi|315655418|ref|ZP_07908318.1| crossover junction endoribonuclease subunit C [Mobiluncus curtisii
ATCC 51333]
gi|315490358|gb|EFU79983.1| crossover junction endoribonuclease subunit C [Mobiluncus curtisii
ATCC 51333]
Length = 213
Score = 128 bits (321), Expect = 4e-28, Method: Composition-based stats.
Identities = 38/137 (27%), Positives = 69/137 (50%), Gaps = 1/137 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R++GIDPG+ R G G+VD V + S + FRL ++ +G+ + I +
Sbjct: 1 MRVLGIDPGITRCGIGVVDFDASRRCTLVYVDVVRSDPNTATQFRLLKISQGVAEAINRF 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
+P+ A+E+ F ++ + QA IA++ A +PV+ + P+ +K AV G G K
Sbjct: 61 QPDIVALERPFAKENRQSVATTMQAMGIAMVEAARQGLPVAVHTPSEVKAAVSGNGSAAK 120
Query: 124 KQIHMMLKMLMPESFFK 140
Q+ M+ ++
Sbjct: 121 AQVQAMVARILRLDKPP 137
>gi|87302129|ref|ZP_01084954.1| Holliday junction resolvase RuvC [Synechococcus sp. WH 5701]
gi|87283054|gb|EAQ75010.1| Holliday junction resolvase RuvC [Synechococcus sp. WH 5701]
Length = 153
Score = 128 bits (321), Expect = 4e-28, Method: Composition-based stats.
Identities = 42/138 (30%), Positives = 72/138 (52%), Gaps = 2/138 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPGL R G+G+++ G + G I + RL ++ L +++ W
Sbjct: 1 MRILGIDPGLARVGYGLIE-TGPPQRLLDCGMIRTEAGTPEGERLVEIARDLRWLVRRWS 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
PE A+VE+ F + T+ + QAR + +++ A R+PV E+ P IK+A+ G GH DK
Sbjct: 60 PELASVEKFFFYRS-STTISVVQARGVVMMTLARLRVPVVEFPPMQIKQALTGSGHADKN 118
Query: 125 QIHMMLKMLMPESFFKGK 142
+ + + +
Sbjct: 119 DVLDAVMRELDLAHPPRP 136
>gi|317970460|ref|ZP_07971850.1| Holliday junction resolvase [Synechococcus sp. CB0205]
Length = 157
Score = 128 bits (321), Expect = 4e-28, Method: Composition-based stats.
Identities = 46/141 (32%), Positives = 75/141 (53%), Gaps = 4/141 (2%)
Query: 5 IRIIGIDPGLRRTGWGIVDVA---GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
+RI+GIDPGL R G+G++DV G + G I + +S R+ ++ + L +I+
Sbjct: 1 MRILGIDPGLARVGYGVIDVEEGPGGAQTMLDCGIIRTDPGRSDGERMVEIAKDLRVLIR 60
Query: 62 NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
NW+P+ AAVE+ F + T+ + QAR + +++ A IPV E+ P IK A+ G GH
Sbjct: 61 NWKPDLAAVEKFFFYRS-STTISVVQARGVLMMTLARFSIPVVEFPPMQIKLALAGHGHA 119
Query: 122 DKKQIHMMLKMLMPESFFKGK 142
DK + + +
Sbjct: 120 DKDDVLDAVMRELNLETPPRP 140
>gi|260903853|ref|ZP_05912175.1| crossover junction endodeoxyribonuclease RuvC [Brevibacterium
linens BL2]
Length = 198
Score = 127 bits (320), Expect = 4e-28, Method: Composition-based stats.
Identities = 39/134 (29%), Positives = 65/134 (48%), Gaps = 1/134 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+RI+G+DPGL R G G++D VS + + S+ RL L E + +
Sbjct: 1 MRILGVDPGLTRCGLGVIDSLPARKAKMVSVDVLRTPSTDSVDLRLGALAEAFDSWLDTY 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
RP+ A+E+VF D + Q + + A +PV+ + P+ +K A+ G G DK
Sbjct: 61 RPDVVAIERVFARNDVSTIMGTAQVSGLTMGLAARRGLPVAMHTPSEVKAAITGSGRADK 120
Query: 124 KQIHMMLKMLMPES 137
KQ+ M+ ++
Sbjct: 121 KQVTNMVTRILELE 134
>gi|225848859|ref|YP_002729023.1| crossover junction endodeoxyribonuclease RuvC (Hollidayjunction
nuclease ruvC) (Holliday junction resolvase ruvC)
[Sulfurihydrogenibium azorense Az-Fu1]
gi|225643382|gb|ACN98432.1| crossover junction endodeoxyribonuclease RuvC (Hollidayjunction
nuclease ruvC) (Holliday junction resolvase ruvC)
[Sulfurihydrogenibium azorense Az-Fu1]
Length = 153
Score = 127 bits (320), Expect = 4e-28, Method: Composition-based stats.
Identities = 42/150 (28%), Positives = 74/150 (49%), Gaps = 4/150 (2%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
++II +DP +TG+ + +V D + + G+I+ ++ L L+E L D I
Sbjct: 1 MKIISLDPSTSKTGYAVAEVYEDKISLIEYGSILLKGKK---NTLKLLFETLQDKINQHS 57
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
E +E F + +A +KLG+ R + +L + + V +Y P +K A G G K+
Sbjct: 58 IEAVILETPFYSINAQTLIKLGEVRGVILLLAQINNLKVFQYTPAEVKIAATGYGRSSKE 117
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCH 154
++ M+ + + D AD+LAI CH
Sbjct: 118 EVINMVNRIFNL-DIQDSDIADSLAILYCH 146
>gi|320332684|ref|YP_004169395.1| Crossover junction endodeoxyribonuclease ruvC [Deinococcus
maricopensis DSM 21211]
gi|319753973|gb|ADV65730.1| Crossover junction endodeoxyribonuclease ruvC [Deinococcus
maricopensis DSM 21211]
Length = 164
Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats.
Identities = 42/135 (31%), Positives = 71/135 (52%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ ++GIDPGL G G+VD + S + + L RL L+E ++ +I+ +
Sbjct: 1 MIVLGIDPGLANLGIGVVDGDARKARHLHSVCLFTASAWELPRRLRYLHEEVSRLIEVFE 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
PE A+E+ ++ K A K+GQA + L+ A A IP+ Y P +K+ ++G G DK+
Sbjct: 61 PEAVAIEEQYLRKQADVAFKVGQAFGVVQLACAQADIPIYTYGPMQVKQTIVGTGRADKE 120
Query: 125 QIHMMLKMLMPESFF 139
Q+ M+K +
Sbjct: 121 QVIYMVKATLGIRDI 135
>gi|116330277|ref|YP_799995.1| crossover junction endoribonuclease [Leptospira borgpetersenii
serovar Hardjo-bovis JB197]
gi|116123966|gb|ABJ75237.1| Crossover junction endoribonuclease [Leptospira borgpetersenii
serovar Hardjo-bovis JB197]
Length = 166
Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats.
Identities = 45/162 (27%), Positives = 82/162 (50%), Gaps = 1/162 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RIIGIDPG R G+ +++ + ++ GT+ L L +GLT+++K ++
Sbjct: 1 MRIIGIDPGSHRAGYAVLEKTASKIRILAYGTVEVPSGTPSPNNLLVLRKGLTEILKEFK 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P A+VE++F K+ ++ ++R + +++ A I + E + IKK G G DKK
Sbjct: 61 PSIASVEEMFFAKNKKTASRVFESRGVLLVTLAEMNIQILEPTVSQIKKGTTGSGTADKK 120
Query: 125 QI-HMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
QI + +L + D+ DA+A A ++S +
Sbjct: 121 QIRQALKLLLDIDLLKGHDDSWDAVAAAYVGLSMSSSPLFAA 162
>gi|307150321|ref|YP_003885705.1| Crossover junction endodeoxyribonuclease [Cyanothece sp. PCC 7822]
gi|306980549|gb|ADN12430.1| Crossover junction endodeoxyribonuclease [Cyanothece sp. PCC 7822]
Length = 162
Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats.
Identities = 33/153 (21%), Positives = 68/153 (44%), Gaps = 3/153 (1%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGD-NLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDV 59
M K R +G+DPGL R GW ++++ + GTI + R RL ++ + ++++
Sbjct: 1 MSK--RWLGLDPGLARIGWAVLEIDEPLPAQLLDYGTIETSKRCPTPERLLEIEKDISEI 58
Query: 60 IKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVG 119
++ ++P+ A+E F + A + QA + L + + K + G
Sbjct: 59 LQEFQPQAVAIEMPFFGRQIKAAGGVIQALGVLNLVIYRELKILPILLHQSSWKCYLDHG 118
Query: 120 HGDKKQIHMMLKMLMPESFFKGKDAADALAIAV 152
K+++ +++ + D DA+ IA
Sbjct: 119 RATKQEVAEIIQNIFNLDSLPIDDTVDAIGIAY 151
>gi|302541122|ref|ZP_07293464.1| crossover junction endodeoxyribonuclease RuvC [Streptomyces
hygroscopicus ATCC 53653]
gi|302458740|gb|EFL21833.1| crossover junction endodeoxyribonuclease RuvC [Streptomyces
himastatinicus ATCC 53653]
Length = 184
Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats.
Identities = 57/150 (38%), Positives = 82/150 (54%), Gaps = 2/150 (1%)
Query: 11 DPGLRRTGWGIVD-VAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAA 69
DPGL R G G+VD VAG L V G I + + RL + G+ + + RPE A
Sbjct: 2 DPGLTRCGIGVVDGVAGRPLRMVGVGVIRTPADAEIGDRLVLVERGIEEWLDAHRPEFVA 61
Query: 70 VEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMM 129
VE+VF + + QA A+A+L A +PV+ + P+ +K AV G G +K Q+ M
Sbjct: 62 VERVFSQHNVQTVMGTAQASAVAMLCAARRGLPVALHTPSEVKAAVTGSGRAEKAQVGAM 121
Query: 130 LKMLMPE-SFFKGKDAADALAIAVCHAYHA 158
+ L+ + K DAADALA+A+CH + A
Sbjct: 122 VTRLLRLDAPPKPADAADALALAICHIWRA 151
>gi|226366280|ref|YP_002784063.1| Holliday junction resolvase [Rhodococcus opacus B4]
gi|254767482|sp|C1B4C9|RUVC_RHOOB RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|226244770|dbj|BAH55118.1| Holliday junction endonuclease RuvC [Rhodococcus opacus B4]
Length = 189
Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats.
Identities = 42/133 (31%), Positives = 68/133 (51%), Gaps = 1/133 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R++G+DPGL R G+G+VD G + V+ + + L+ RL ++ E I
Sbjct: 1 MRVLGVDPGLTRCGFGVVDGGNGRTVTPVAVDVVRTPADLELSSRLLRISEAAESWIDLH 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
RPE A+E+VF + + QA + L+ A IPV + P+ +K AV G G DK
Sbjct: 61 RPEVVAIERVFAQHNVRTAMGTAQAGGVVALAAARRGIPVCFHTPSEVKAAVTGSGSADK 120
Query: 124 KQIHMMLKMLMPE 136
Q+ M+ ++
Sbjct: 121 AQVTAMVTRILKL 133
>gi|194477212|ref|YP_002049391.1| Holliday junction resolvase RuvC [Paulinella chromatophora]
gi|171192219|gb|ACB43181.1| Holliday junction resolvase RuvC [Paulinella chromatophora]
Length = 154
Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats.
Identities = 42/138 (30%), Positives = 73/138 (52%), Gaps = 1/138 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPGL G+G+VD+ + + G I + +++ RL ++ + ++K WR
Sbjct: 1 MRILGIDPGLASLGYGVVDIFNNQKQMLGCGVIQTDKKRAEGDRLVEISRDIRTIVKLWR 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
PE A++EQ F + L QAR +AIL+ A +IP+ E+ P +K ++G G+ K
Sbjct: 61 PELASIEQFFFYRSNNTVSIL-QARGVAILTLAYLKIPIVEFTPMQVKLTLVGSGNAKKY 119
Query: 125 QIHMMLKMLMPESFFKGK 142
Q+ + +
Sbjct: 120 QVLETVMKELQLKSPPSP 137
>gi|308271857|emb|CBX28465.1| hypothetical protein N47_G37890 [uncultured Desulfobacterium sp.]
Length = 167
Score = 127 bits (319), Expect = 6e-28, Method: Composition-based stats.
Identities = 51/162 (31%), Positives = 90/162 (55%), Gaps = 2/162 (1%)
Query: 2 RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
+K I++IGIDPGL TG GI+ AG + S G+I + Q LA RL +Y L ++K
Sbjct: 5 QKMIKVIGIDPGLASTGVGIICGAGLKIQRFSFGSINTSKNQVLAERLDHIYSKLLLLLK 64
Query: 62 NWRPEEAAVEQVF-VNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
+ +P+ +E VF ++ + + LG+ + +LS A + SE A +K + G G+
Sbjct: 65 DEKPDLMVLEDVFSLDTYPKSGINLGKVTGVILLSACHAGVRTSEVAVREVKHVLTGNGN 124
Query: 121 GDKKQIHMMLKMLMPESFF-KGKDAADALAIAVCHAYHANSG 161
+K+Q+ + ++ L+ + K A+DA+A+A+ + N+
Sbjct: 125 ANKEQLELTVRHLLKLNTPIKPYHASDAIALALLGLFRHNNN 166
>gi|320536681|ref|ZP_08036694.1| crossover junction endodeoxyribonuclease RuvC [Treponema phagedenis
F0421]
gi|320146472|gb|EFW38075.1| crossover junction endodeoxyribonuclease RuvC [Treponema phagedenis
F0421]
Length = 161
Score = 127 bits (319), Expect = 6e-28, Method: Composition-based stats.
Identities = 47/142 (33%), Positives = 79/142 (55%), Gaps = 1/142 (0%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
MR+ I I+GIDPGL G+G+V +G L ++ G I + + RL +++ + V+
Sbjct: 1 MREKI-IVGIDPGLASAGYGVVAQSGSRLRCLTYGVIQTKPENTQGERLAIIFDSIGGVL 59
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
K + P+ A +E ++ K+ L + +AR + +L+ A +IPV EYAPN IKK V G+
Sbjct: 60 KEFTPDAAGIETLYFAKNVTNGLSVAEARGVILLAFAQWQIPVREYAPNAIKKTVTGIAQ 119
Query: 121 GDKKQIHMMLKMLMPESFFKGK 142
+K Q+ +K+L+
Sbjct: 120 ANKHQVQESVKILLGLKTAPTP 141
>gi|327398527|ref|YP_004339396.1| crossover junction endodeoxyribonuclease RuvC [Hippea maritima DSM
10411]
gi|327181156|gb|AEA33337.1| crossover junction endodeoxyribonuclease RuvC [Hippea maritima DSM
10411]
Length = 154
Score = 127 bits (319), Expect = 6e-28, Method: Composition-based stats.
Identities = 43/156 (27%), Positives = 76/156 (48%), Gaps = 4/156 (2%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ I+G+DPG T G +D I + S ++ ++E L + IKN++
Sbjct: 1 MLILGVDPGSSITACGFIDPTTKKT---DFDFIKFKQKTSQEEKIFGVFEFLDNAIKNFK 57
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P E VE F + + + + L + +A I++ + V +Y P IK+A+ G G DK
Sbjct: 58 PNEVVVESPFYSVNIKSAMVLSEIKAAVIIAAKQNNLKVFQYTPRQIKQAICGYGAADKN 117
Query: 125 QIHMMLKMLMPESFF-KGKDAADALAIAVCHAYHAN 159
Q+ +L+ + + + D +DALA+A+ H Y
Sbjct: 118 QVRFVLEKTLNINLKDEPLDVSDALAVALTHIYTKG 153
>gi|295112191|emb|CBL28941.1| crossover junction endodeoxyribonuclease RuvC [Synergistetes
bacterium SGP1]
Length = 171
Score = 127 bits (319), Expect = 6e-28, Method: Composition-based stats.
Identities = 42/138 (30%), Positives = 67/138 (48%), Gaps = 1/138 (0%)
Query: 6 RI-IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
R+ +G+DPGL R G+G V +G + G I + + S R+ Q+Y L + ++
Sbjct: 7 RVCLGVDPGLARVGYGAVARSGSRFRALEYGCIETSPKLSFMQRILQIYAKLGEQLERCA 66
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P +VE++F +A + QAR + +L A + V E PN IK AV G G DK+
Sbjct: 67 PAFMSVERLFFGHNATTAEFVWQARGVVMLLAAQRGLAVVEPKPNQIKLAVCGTGGADKR 126
Query: 125 QIHMMLKMLMPESFFKGK 142
Q+ M + +
Sbjct: 127 QVQRMTQRFLGLDRVPSP 144
>gi|296170846|ref|ZP_06852407.1| crossover junction endoribonuclease subunit C [Mycobacterium
parascrofulaceum ATCC BAA-614]
gi|295894502|gb|EFG74243.1| crossover junction endoribonuclease subunit C [Mycobacterium
parascrofulaceum ATCC BAA-614]
Length = 184
Score = 126 bits (318), Expect = 7e-28, Method: Composition-based stats.
Identities = 46/167 (27%), Positives = 84/167 (50%), Gaps = 3/167 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R++G+DPGL R G +V+ G ++ + + + LA RL + + + +
Sbjct: 1 MRVMGVDPGLTRCGLSVVESGRGRSVVALDVDVVRTPSDAPLAKRLLAISDAVEHWLATH 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
+P+ A+E+VF + + QA + L+ A + V + P+ +K AV G G DK
Sbjct: 61 QPDVVAIERVFSQLNVSTVMGTAQAGGVVALAAAKRGVDVHFHTPSEVKAAVTGNGAADK 120
Query: 124 KQIHMMLKMLMPES-FFKGKDAADALAIAVCHAYHANSGYYKIASQD 169
Q+ M+ ++ DAADALA+A+CH + A ++A+ +
Sbjct: 121 AQVTAMVTKILALQAKPTPADAADALALAICHCWRA-PMIARLAAAE 166
>gi|325917781|ref|ZP_08179965.1| Holliday junction endonuclease RuvC [Xanthomonas vesicatoria ATCC
35937]
gi|325535997|gb|EGD07809.1| Holliday junction endonuclease RuvC [Xanthomonas vesicatoria ATCC
35937]
Length = 174
Score = 126 bits (318), Expect = 8e-28, Method: Composition-based stats.
Identities = 64/158 (40%), Positives = 93/158 (58%), Gaps = 1/158 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
RI+GIDPG +RTG GI+DV G V ++ A RL +L GL ++I+ +R
Sbjct: 3 RILGIDPGSQRTGVGIIDVDEGGRSRHVHHAPLLLLGEGDFAQRLKRLLHGLGELIETYR 62
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+E A+E+VF+ K A + LKLG AR AI + + +PV EYA IK A++G G DK
Sbjct: 63 PDEVAIEKVFMGKSADSALKLGHARGAAICAVVMRDLPVHEYAATEIKLALVGKGGADKV 122
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGY 162
Q+ M+ +++ DAADALA+A+ HA+ +
Sbjct: 123 QVQHMVGIMLNLKGKLQADAADALAVAITHAHVRATAQ 160
>gi|172040614|ref|YP_001800328.1| Holliday junction resolvase [Corynebacterium urealyticum DSM 7109]
gi|171851918|emb|CAQ04894.1| ruvC [Corynebacterium urealyticum DSM 7109]
Length = 202
Score = 126 bits (318), Expect = 8e-28, Method: Composition-based stats.
Identities = 41/141 (29%), Positives = 72/141 (51%), Gaps = 4/141 (2%)
Query: 2 RKSI---RIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLT 57
+S+ R++GIDPGL R G +V G + V+ G + + L RL +LY ++
Sbjct: 33 AESMVGKRVMGIDPGLTRCGLSVVQAGQGRAVFPVAVGVVRTESHVPLEQRLQRLYRAVS 92
Query: 58 DVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIG 117
+ I ++ P+ A+E+VF + + A + +L+ A + V Y P+ +KKA+ G
Sbjct: 93 EWIADYSPDVVAIERVFERSNVSTVMNTAHASGVLMLAAAERGLAVESYTPSEVKKAISG 152
Query: 118 VGHGDKKQIHMMLKMLMPESF 138
G DK Q+ M+ ++ S
Sbjct: 153 NGRADKAQMTKMITRILGLSE 173
>gi|159026053|emb|CAO86294.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
Length = 161
Score = 126 bits (318), Expect = 8e-28, Method: Composition-based stats.
Identities = 44/147 (29%), Positives = 63/147 (42%), Gaps = 1/147 (0%)
Query: 7 IIGIDPGLRRTGWGIVDVAGD-NLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
+GIDPGL GW I+ + V GTI + S A RL ++ L ++I ++P
Sbjct: 4 WLGIDPGLAIVGWAILRDNSELVPILVDYGTIETSKNLSTAQRLIEIERDLKELIAEYKP 63
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
E AVE F N+ A + QA I L + K +G G K +
Sbjct: 64 GEIAVEMPFFNRQIKAAGGVLQALGIINLVSCRDGGIEPIFLHQASWKCHLGHGRATKAE 123
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAV 152
+ +K L + DA DA+AIA
Sbjct: 124 VAEQIKYLFGLTKMPINDAVDAIAIAY 150
>gi|288923987|ref|ZP_06418057.1| crossover junction endodeoxyribonuclease RuvC [Frankia sp. EUN1f]
gi|288344665|gb|EFC79124.1| crossover junction endodeoxyribonuclease RuvC [Frankia sp. EUN1f]
Length = 179
Score = 126 bits (318), Expect = 8e-28, Method: Composition-based stats.
Identities = 45/135 (33%), Positives = 72/135 (53%), Gaps = 1/135 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R++G+DPGL R G G+VD G V G + + +A RL + EG+ + +
Sbjct: 1 MRVLGVDPGLTRCGIGVVDGGPGRRASLVDVGVVRTPASDEVAQRLRAVSEGVEEWLDRL 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
RP+ AVE+VF + + QA A+AI++ A +P+ Y P+ +K AV G G DK
Sbjct: 61 RPDAVAVEKVFSQANVRTVMGTAQAGAVAIVAAARRGLPIGLYTPSEVKAAVTGSGRADK 120
Query: 124 KQIHMMLKMLMPESF 138
Q+ M+ L+ +
Sbjct: 121 AQVGFMVTRLLDLAE 135
>gi|226357097|ref|YP_002786837.1| crossover junction endodeoxyribonuclease (Holliday junction
resolvase) [Deinococcus deserti VCD115]
gi|226319087|gb|ACO47083.1| putative crossover junction endodeoxyribonuclease ruvC (Holliday
junction resolvase ruvC) [Deinococcus deserti VCD115]
Length = 169
Score = 126 bits (318), Expect = 9e-28, Method: Composition-based stats.
Identities = 40/135 (29%), Positives = 70/135 (51%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M + ++GIDPGL G G+VD + + + + RL ++E +T ++
Sbjct: 1 MLSDMIVLGIDPGLANLGLGLVDGDIRKARHLHHVCLTTESAWVMPRRLQYIHEEVTRLL 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
++PE A+E + + A K+GQA + L+ A A +P+ Y P +KKA++G G
Sbjct: 61 AEYQPEAVAIEDQILRRQADVAFKVGQAFGVVQLACAQAGVPIHSYGPMQVKKALVGTGR 120
Query: 121 GDKKQIHMMLKMLMP 135
DK+Q+ M+K +
Sbjct: 121 ADKEQVIYMVKASLG 135
>gi|145224408|ref|YP_001135086.1| Holliday junction resolvase [Mycobacterium gilvum PYR-GCK]
gi|145216894|gb|ABP46298.1| Holliday junction endonuclease RuvC [Mycobacterium gilvum PYR-GCK]
Length = 220
Score = 126 bits (317), Expect = 9e-28, Method: Composition-based stats.
Identities = 48/156 (30%), Positives = 80/156 (51%), Gaps = 2/156 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R++G+DPGL R G +++ G + + + + LA RL + + +
Sbjct: 29 VRVMGVDPGLTRCGLSVIESGRGRQVIALDVDVVRTPSDHPLAHRLLAISNAVEHWLDTH 88
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
RP+ A+E+VF N++A + QA + L+ A I V + P+ +K AV G G DK
Sbjct: 89 RPDVIAIERVFSNQNANTAMGTAQAGGVVALAAARRDIDVHFHTPSEVKAAVTGNGRADK 148
Query: 124 KQIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHA 158
Q+ M+ ++ DAADALA+A+CH + A
Sbjct: 149 AQVTEMVTRILALQQKPTPADAADALALAICHCWRA 184
>gi|259507386|ref|ZP_05750286.1| Holliday junction nuclease [Corynebacterium efficiens YS-314]
gi|44888501|sp|Q8FPK3|RUVC_COREF RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|259165011|gb|EEW49565.1| Holliday junction nuclease [Corynebacterium efficiens YS-314]
Length = 223
Score = 126 bits (317), Expect = 9e-28, Method: Composition-based stats.
Identities = 41/135 (30%), Positives = 72/135 (53%), Gaps = 1/135 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCF-VSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R++GIDPGL R G +V + VS G + + LA RL +L + + + + ++
Sbjct: 6 LRVMGIDPGLTRCGLSVVQAGRGRTVYPVSVGVVRTPSDAELADRLLRLSQAVGEWMDDY 65
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
P+ A+E+VF + + A + IL+ A +PV Y P+ +KKA+ G G DK
Sbjct: 66 TPDVIAIERVFERGNVSTVMNTAHAVGVLILAAAERGLPVHMYTPSEVKKAISGNGRADK 125
Query: 124 KQIHMMLKMLMPESF 138
KQ+ +M+ ++ +
Sbjct: 126 KQMTVMITRILGLAE 140
>gi|318040305|ref|ZP_07972261.1| Holliday junction resolvase [Synechococcus sp. CB0101]
Length = 158
Score = 126 bits (317), Expect = 9e-28, Method: Composition-based stats.
Identities = 41/142 (28%), Positives = 72/142 (50%), Gaps = 5/142 (3%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAG----DNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
+ I+GIDPGL R G+G+++V G + G I + +S R+ ++ L +I
Sbjct: 1 MVILGIDPGLARVGYGLIEVEGTPGRGQQRLLDCGIIRTDPGRSEGERMVEIARDLRQLI 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
+ W+P+ A VE+ F + T+ + QAR + +++ A +IPV E+ P IK A+ G GH
Sbjct: 61 RAWQPQLAVVEKFFFYRS-STTISVVQARGVLMMTLARFQIPVVEFPPMQIKLALAGHGH 119
Query: 121 GDKKQIHMMLKMLMPESFFKGK 142
+K + + +
Sbjct: 120 AEKDDVLAAVMRELNLDTPPRP 141
>gi|254524664|ref|ZP_05136719.1| crossover junction endodeoxyribonuclease RuvC [Stenotrophomonas sp.
SKA14]
gi|219722255|gb|EED40780.1| crossover junction endodeoxyribonuclease RuvC [Stenotrophomonas sp.
SKA14]
Length = 173
Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats.
Identities = 62/165 (37%), Positives = 97/165 (58%), Gaps = 2/165 (1%)
Query: 6 RIIGIDPGLRRTGWGIVDVAG-DNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
RI+GIDPG +RTG GI+DV + V +V R+ L GL D+ + ++
Sbjct: 3 RILGIDPGSQRTGVGIIDVDAAGRVSHVHHQPLVLLGADDFPQRMKLLVLGLADLCREYQ 62
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P E A+E+VF+ ++ + LKLGQAR AI + L +PV EYA + IK AV+G G +K+
Sbjct: 63 PNEVAIEKVFMARNPDSALKLGQARGAAISAVVLRDLPVHEYAASEIKLAVVGRGGAEKQ 122
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAY-HANSGYYKIASQ 168
Q+ M+ +++ DAADALA+A+ HA+ A + ++++
Sbjct: 123 QVQHMVGLMLNLKTKLQADAADALAVAITHAHVRATANRLGLSAR 167
>gi|158316902|ref|YP_001509410.1| Holliday junction resolvase [Frankia sp. EAN1pec]
gi|238686854|sp|A8KZE8|RUVC_FRASN RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|158112307|gb|ABW14504.1| crossover junction endodeoxyribonuclease RuvC [Frankia sp. EAN1pec]
Length = 178
Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats.
Identities = 45/135 (33%), Positives = 71/135 (52%), Gaps = 1/135 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R++G+DPGL R G G+VD G V G + + +A RL + EG+ + +
Sbjct: 1 MRVLGVDPGLTRCGLGVVDGGPGRRASLVEVGVVRTPASDEVADRLRAVSEGVDEWLDRV 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
RP+ AVE+VF + + QA A+AI++ A +P+ Y P+ +K AV G G DK
Sbjct: 61 RPDAVAVEKVFSQANVRTVMGTAQAGAVAIVAAARRGLPIGLYTPSEVKAAVTGSGRADK 120
Query: 124 KQIHMMLKMLMPESF 138
Q+ M+ L+
Sbjct: 121 AQVGFMVTKLLDLPE 135
>gi|260435322|ref|ZP_05789292.1| crossover junction endodeoxyribonuclease RuvC [Synechococcus sp. WH
8109]
gi|260413196|gb|EEX06492.1| crossover junction endodeoxyribonuclease RuvC [Synechococcus sp. WH
8109]
Length = 154
Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats.
Identities = 43/138 (31%), Positives = 73/138 (52%), Gaps = 1/138 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPGL R G+G++D+ + G I + +S R+ ++ L +I+ WR
Sbjct: 1 MRILGIDPGLARVGYGVIDIQDGCQRMLDCGIIQTDSGRSDGDRMVEMAGDLRQLIRIWR 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
PE AAVE+ F + + + QAR + +++ A +IP+ E+ P IK AV G GH +K
Sbjct: 61 PELAAVEKFFFYRSSNTINVV-QARGVVVMTLARFKIPMVEFPPMQIKLAVAGFGHAEKD 119
Query: 125 QIHMMLKMLMPESFFKGK 142
++ + +
Sbjct: 120 EVLEAVMRELNLEEPPRP 137
>gi|190575570|ref|YP_001973415.1| Holliday junction resolvase [Stenotrophomonas maltophilia K279a]
gi|229558764|sp|B2FRN7|RUVC_STRMK RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|190013492|emb|CAQ47127.1| putative crossover junction endodeoxyribonuclease [Stenotrophomonas
maltophilia K279a]
Length = 173
Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats.
Identities = 62/165 (37%), Positives = 98/165 (59%), Gaps = 2/165 (1%)
Query: 6 RIIGIDPGLRRTGWGIVDVAG-DNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
RI+GIDPG +RTG GI+DV + +V +V R+ L GL D+ + +
Sbjct: 3 RILGIDPGSQRTGVGIIDVDATGRVSYVHHQPLVLLGADDFPQRMKLLVLGLADLCREYE 62
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+E A+E+VF+ ++ + LKLGQAR AI + L +PV EYA + IK AV+G G +K+
Sbjct: 63 PQEVAIERVFMARNPDSALKLGQARGAAISAVVLRDLPVHEYAASEIKLAVVGRGGAEKQ 122
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAY-HANSGYYKIASQ 168
Q+ M+ +++ DAADALA+A+ HA+ A + ++++
Sbjct: 123 QVQHMVGLMLNLKIKLQADAADALAVAITHAHVRATANRLGLSAR 167
>gi|166363327|ref|YP_001655600.1| holliday juction resolvase [Microcystis aeruginosa NIES-843]
gi|166085700|dbj|BAG00408.1| holliday juction resolvase [Microcystis aeruginosa NIES-843]
Length = 161
Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats.
Identities = 44/147 (29%), Positives = 64/147 (43%), Gaps = 1/147 (0%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNL-CFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
+GIDPGL GW I+ + + V GTI + S A RL ++ L ++I ++P
Sbjct: 4 WLGIDPGLAIVGWAILRDNSELMPILVDYGTIETSKNLSTAQRLIEIERDLKELIAEYKP 63
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
E AVE F N+ A + QA I L + K +G G K +
Sbjct: 64 GEIAVEMPFFNRQIKAAGGVLQALGIINLVSCRDGGIEPIFLHQASWKCHLGHGKATKAE 123
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAV 152
+ +K L + DA DA+AIA
Sbjct: 124 VAEQIKYLFGLTKMPINDAVDAIAIAY 150
>gi|323359951|ref|YP_004226347.1| holliday junction resolvasome, endonuclease subunit [Microbacterium
testaceum StLB037]
gi|323276322|dbj|BAJ76467.1| holliday junction resolvasome, endonuclease subunit [Microbacterium
testaceum StLB037]
Length = 203
Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats.
Identities = 53/169 (31%), Positives = 82/169 (48%), Gaps = 20/169 (11%)
Query: 2 RKSIRIIGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
+S+R++GIDPGL R G G+VDV+ + V G S + RL + G+ V+
Sbjct: 5 SRSLRVLGIDPGLTRCGIGVVDVSPNRTASLVHVGVARSAPSDPIEKRLAAIAAGIRSVL 64
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
+ P+ AVE+VF + + + QA IA+L A IP + + P+ +K A+ G G
Sbjct: 65 REHDPQVVAVERVFAQNNRHSVMGTAQASGIALLLAAEHGIPAATHTPSEVKAAITGYGS 124
Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADAL----------AIAVCHAYHAN 159
DK Q+ M+ ++ DAL AIA+CHA+
Sbjct: 125 ADKLQVQTMVARVLRL---------DALPQPADAADALAIALCHAWRGG 164
>gi|158522218|ref|YP_001530088.1| crossover junction endodeoxyribonuclease [Desulfococcus oleovorans
Hxd3]
gi|158511044|gb|ABW68011.1| Crossover junction endodeoxyribonuclease [Desulfococcus oleovorans
Hxd3]
Length = 161
Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats.
Identities = 45/151 (29%), Positives = 78/151 (51%), Gaps = 2/151 (1%)
Query: 4 SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+++IGIDPGL TG GIV + S G I + SL RL +++ + D++++
Sbjct: 1 MVKVIGIDPGLADTGVGIVKGCDGRVSGYSFGCIQTSKNDSLQCRLHRIFSNVQDLLRDE 60
Query: 64 RPEEAAVEQVFV-NKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
+P+ VE VF K V+ + LG+ + +L+ + + IK+ V G G+
Sbjct: 61 KPDVMVVEDVFFLKKYPVSGIVLGEVTGVILLAGFQENVKAVKVPVREIKQVVTGNGNAG 120
Query: 123 KKQIHMML-KMLMPESFFKGKDAADALAIAV 152
KKQ+ + + L + + A+DALA+A+
Sbjct: 121 KKQLGEAVSRFLGHDGPIRPDHASDALALAI 151
>gi|256825359|ref|YP_003149319.1| Holliday junction endonuclease RuvC [Kytococcus sedentarius DSM
20547]
gi|256688752|gb|ACV06554.1| Holliday junction endonuclease RuvC [Kytococcus sedentarius DSM
20547]
Length = 208
Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats.
Identities = 40/134 (29%), Positives = 70/134 (52%), Gaps = 1/134 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVD-VAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R++G+DPGL R G G+V+ G +L V+ + RL + + D I+ +
Sbjct: 1 MRVLGVDPGLTRCGLGVVEGRRGGSLRMVAVDVARTSADTLPEQRLLSVSRRIEDWIETY 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
P+ AVE++F D + QA +A+++ A A I V ++ P+ +K AV G G K
Sbjct: 61 DPDAVAVERIFARSDVSTIMGTVQASGVALVAAARAGIEVGQHTPSEVKAAVCGNGRAGK 120
Query: 124 KQIHMMLKMLMPES 137
+Q+ M+ ++ S
Sbjct: 121 EQVTSMVVRILSLS 134
>gi|25028331|ref|NP_738385.1| Holliday junction resolvase [Corynebacterium efficiens YS-314]
gi|23493616|dbj|BAC18585.1| crossover junction endodeoxyribonuclease RuvC [Corynebacterium
efficiens YS-314]
Length = 230
Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats.
Identities = 41/135 (30%), Positives = 72/135 (53%), Gaps = 1/135 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCF-VSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R++GIDPGL R G +V + VS G + + LA RL +L + + + + ++
Sbjct: 13 LRVMGIDPGLTRCGLSVVQAGRGRTVYPVSVGVVRTPSDAELADRLLRLSQAVGEWMDDY 72
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
P+ A+E+VF + + A + IL+ A +PV Y P+ +KKA+ G G DK
Sbjct: 73 TPDVIAIERVFERGNVSTVMNTAHAVGVLILAAAERGLPVHMYTPSEVKKAISGNGRADK 132
Query: 124 KQIHMMLKMLMPESF 138
KQ+ +M+ ++ +
Sbjct: 133 KQMTVMITRILGLAE 147
>gi|84687719|ref|ZP_01015592.1| Holliday junction resolvase [Maritimibacter alkaliphilus HTCC2654]
gi|84664302|gb|EAQ10793.1| Holliday junction resolvase [Rhodobacterales bacterium HTCC2654]
Length = 165
Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats.
Identities = 84/154 (54%), Positives = 109/154 (70%), Gaps = 1/154 (0%)
Query: 8 IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEE 67
+GIDPGLR GWG++DV+G + +++G + L RL L++ LTDV+ + P+
Sbjct: 1 MGIDPGLRNLGWGVIDVSGSRISHIANGVCH-GTGEDLGDRLLALFDALTDVVARFAPDT 59
Query: 68 AAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIH 127
AAVEQ FVNKD TLKLGQAR IA+L PA A + V EYAPNTIKK V+GVGH DK+QI
Sbjct: 60 AAVEQTFVNKDGAGTLKLGQARGIAMLVPARAGLSVGEYAPNTIKKTVVGVGHADKRQID 119
Query: 128 MMLKMLMPESFFKGKDAADALAIAVCHAYHANSG 161
M+++ +P G DAADALAIA+CHA+HA +G
Sbjct: 120 HMVRLQLPGVEIAGPDAADALAIALCHAHHARAG 153
>gi|152967000|ref|YP_001362784.1| Holliday junction resolvase [Kineococcus radiotolerans SRS30216]
gi|151361517|gb|ABS04520.1| crossover junction endodeoxyribonuclease RuvC [Kineococcus
radiotolerans SRS30216]
Length = 207
Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats.
Identities = 37/137 (27%), Positives = 69/137 (50%), Gaps = 2/137 (1%)
Query: 8 IGIDPGLRRTGWGIVDVA--GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
+ +DPGL R G G++D G V+ G + + + RL + EGL + + RP
Sbjct: 2 LAVDPGLTRCGIGVIDSVRVGRRAELVAVGVVRTPATDPVEARLLAISEGLEEWLDAHRP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ AVE+VF + + + QA + +++ A +PV+ + P+ +K AV G G +K+Q
Sbjct: 62 DVVAVERVFAQSNVRSVMGTAQAAGLVLVAAARRGLPVAMHTPSEVKAAVTGSGRAEKEQ 121
Query: 126 IHMMLKMLMPESFFKGK 142
+ +M+ ++
Sbjct: 122 VTVMVTRILGLDAPPRP 138
>gi|194366899|ref|YP_002029509.1| Holliday junction resolvase [Stenotrophomonas maltophilia R551-3]
gi|226698767|sp|B4ST35|RUVC_STRM5 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|194349703|gb|ACF52826.1| crossover junction endodeoxyribonuclease RuvC [Stenotrophomonas
maltophilia R551-3]
Length = 173
Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats.
Identities = 62/165 (37%), Positives = 97/165 (58%), Gaps = 2/165 (1%)
Query: 6 RIIGIDPGLRRTGWGIVDVAG-DNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
RI+GIDPG +RTG GI+DV + V +V R+ L GL D+ + +
Sbjct: 3 RILGIDPGSQRTGVGIIDVDATGRVSHVHHQPLVLLGADDFPQRMKLLVLGLADLCREYE 62
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+E A+E+VF+ ++ + LKLGQAR AI + L +PV EYA + IK AV+G G +K+
Sbjct: 63 PQEVAIERVFMARNPDSALKLGQARGAAISAVVLRDLPVHEYAASEIKLAVVGRGGAEKQ 122
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAY-HANSGYYKIASQ 168
Q+ M+ +++ DAADALA+A+ HA+ A + ++++
Sbjct: 123 QVQHMVGLMLNLKTKLQADAADALAVAITHAHVRATANRLGLSAR 167
>gi|325914721|ref|ZP_08177059.1| Holliday junction endonuclease RuvC [Xanthomonas vesicatoria ATCC
35937]
gi|325915803|ref|ZP_08178103.1| Holliday junction endonuclease RuvC [Xanthomonas vesicatoria ATCC
35937]
gi|325918024|ref|ZP_08180187.1| Holliday junction endonuclease RuvC [Xanthomonas vesicatoria ATCC
35937]
gi|325535757|gb|EGD07590.1| Holliday junction endonuclease RuvC [Xanthomonas vesicatoria ATCC
35937]
gi|325537986|gb|EGD09682.1| Holliday junction endonuclease RuvC [Xanthomonas vesicatoria ATCC
35937]
gi|325538998|gb|EGD10656.1| Holliday junction endonuclease RuvC [Xanthomonas vesicatoria ATCC
35937]
Length = 147
Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats.
Identities = 54/135 (40%), Positives = 79/135 (58%), Gaps = 1/135 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
RI+GIDPG +RTG GI+DV G V ++ A RL +L GL ++I+ +R
Sbjct: 3 RILGIDPGSQRTGVGIIDVDEGGRSRHVHHAPLLLLGEGDFAQRLKRLLHGLGELIETYR 62
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+E A+E+VF+ K A + LKLG AR AI + + +PV EYA IK A++G G DK
Sbjct: 63 PDEVAIEKVFMGKSADSALKLGHARGAAICAVVMRDLPVHEYAATEIKLALVGKGGADKV 122
Query: 125 QIHMMLKMLMPESFF 139
Q+ M+ +++
Sbjct: 123 QVQHMVGIMLNLKGK 137
>gi|116073109|ref|ZP_01470371.1| Holliday junction resolvase RuvC [Synechococcus sp. RS9916]
gi|116068414|gb|EAU74166.1| Holliday junction resolvase RuvC [Synechococcus sp. RS9916]
Length = 160
Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats.
Identities = 40/144 (27%), Positives = 72/144 (50%), Gaps = 7/144 (4%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGD------NLCFVSSGTIVSCVRQSLAFRLCQLYEGLTD 58
+RI+GIDPGL R G+G++DV + G I + +S R+ ++ L
Sbjct: 1 MRILGIDPGLARVGYGVIDVDPSAGRGTEGQTMLDCGIIRTDPGRSEGQRMVEIAGDLRQ 60
Query: 59 VIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGV 118
+I+ W+P+ A+VE+ F + + + QAR + I++ +P+ E+ P IK+A+ G
Sbjct: 61 LIRLWKPDMASVEKFFFYRSSNTIAVV-QARGVVIMTLTRFGLPIVEFPPMQIKQALTGN 119
Query: 119 GHGDKKQIHMMLKMLMPESFFKGK 142
GH DK ++ + +
Sbjct: 120 GHADKDEVLESVMRELNLDSPPRP 143
>gi|319786204|ref|YP_004145679.1| crossover junction endodeoxyribonuclease RuvC [Pseudoxanthomonas
suwonensis 11-1]
gi|317464716|gb|ADV26448.1| crossover junction endodeoxyribonuclease RuvC [Pseudoxanthomonas
suwonensis 11-1]
Length = 181
Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats.
Identities = 70/160 (43%), Positives = 97/160 (60%), Gaps = 1/160 (0%)
Query: 4 SIRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
++RI+GIDPG +RTG GI+DV G + V +V A RL +L GLT +I+
Sbjct: 10 AVRILGIDPGSQRTGVGIIDVEAGGRVRHVHHQPLVLLGEGDFAARLKRLLHGLTGLIEE 69
Query: 63 WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
++P+E A+EQVFV + A + LKLGQAR AI + L +PVSEYA +K AV+G G D
Sbjct: 70 YQPQEVAIEQVFVGRSADSALKLGQARGAAISAVVLRDLPVSEYAAREVKLAVVGTGAAD 129
Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGY 162
K Q+ M+ ++ DAADALAIA+ HA+ +
Sbjct: 130 KAQVQHMVAAMLGLPGKLQADAADALAIALTHAHVRATAQ 169
>gi|218246333|ref|YP_002371704.1| Crossover junction endodeoxyribonuclease RuvC [Cyanothece sp. PCC
8801]
gi|257059380|ref|YP_003137268.1| Crossover junction endodeoxyribonuclease RuvC [Cyanothece sp. PCC
8802]
gi|218166811|gb|ACK65548.1| Crossover junction endodeoxyribonuclease RuvC [Cyanothece sp. PCC
8801]
gi|256589546|gb|ACV00433.1| Crossover junction endodeoxyribonuclease RuvC [Cyanothece sp. PCC
8802]
Length = 162
Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats.
Identities = 38/153 (24%), Positives = 65/153 (42%), Gaps = 3/153 (1%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNL-CFVSSGTIVSCVRQSLAFRLCQLYEGLTDV 59
M ++ +GIDPGL GW ++ + + G I + A RL ++ + ++
Sbjct: 1 MEQT--WLGIDPGLAIIGWAVLQGKETEIPQLIDYGIIETNKSLPTAARLLEIEGDMVEI 58
Query: 60 IKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVG 119
I+ ++P A+E F N+ A + QA + L + K +G G
Sbjct: 59 IQEFQPAAIAMEMPFFNRQIKAAGGVIQAVGVINLVIYRETKQIPILLHQASWKCHLGDG 118
Query: 120 HGDKKQIHMMLKMLMPESFFKGKDAADALAIAV 152
DKK++ +K L D+ DA+AIA
Sbjct: 119 KADKKEVAARVKCLFDLPSLPIDDSVDAIAIAY 151
>gi|237785622|ref|YP_002906327.1| crossover junction endodeoxyribonuclease [Corynebacterium
kroppenstedtii DSM 44385]
gi|237758534|gb|ACR17784.1| crossover junction endodeoxyribonuclease [Corynebacterium
kroppenstedtii DSM 44385]
Length = 191
Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats.
Identities = 50/155 (32%), Positives = 80/155 (51%), Gaps = 2/155 (1%)
Query: 6 RIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
R++G+DPGL R G V G ++ V+ G I + L+ RL + + + + +
Sbjct: 18 RVMGVDPGLTRCGISTVQAGRGRSVLPVAVGVIRTDASDDLSTRLLDISVKIDEWMDEYH 77
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ A+E+VF + A + I+ A IPV Y P+ +KKAV G G +KK
Sbjct: 78 PDMLAIERVFERGVVSTVMHTAHAVGVIIVCAARRDIPVYMYTPSEVKKAVSGNGRANKK 137
Query: 125 QIHMMLKMLMPESFFK-GKDAADALAIAVCHAYHA 158
Q+ M+ ++ + DAADALA+A+CH + A
Sbjct: 138 QVTAMVTRVLGLAEPPRPADAADALALAICHCWRA 172
>gi|300787174|ref|YP_003767465.1| crossover junction endodeoxyribonuclease RuvC [Amycolatopsis
mediterranei U32]
gi|299796688|gb|ADJ47063.1| crossover junction endodeoxyribonuclease RuvC [Amycolatopsis
mediterranei U32]
Length = 196
Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats.
Identities = 40/134 (29%), Positives = 68/134 (50%), Gaps = 1/134 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R++G+DPGL R G G+VD G + V+ + + LA RL ++ + + + +
Sbjct: 3 VRVLGVDPGLTRCGLGVVDGGKGRAVRCVAVDVVRTPADADLAHRLLEISDEVERWMDKY 62
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
+P AVE+VF + + QA + L+ A +PV + P+ +K AV G G DK
Sbjct: 63 KPAAVAVERVFAQHNVRTAMGTAQAGGVVALAAARRGLPVVFHTPSEVKAAVSGSGRADK 122
Query: 124 KQIHMMLKMLMPES 137
Q+ M+ L+
Sbjct: 123 AQVTAMVMRLLNLE 136
>gi|78213470|ref|YP_382249.1| Holliday junction endonuclease RuvC [Synechococcus sp. CC9605]
gi|123729675|sp|Q3AI88|RUVC_SYNSC RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|78197929|gb|ABB35694.1| Holliday junction resolvase RuvC [Synechococcus sp. CC9605]
Length = 154
Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats.
Identities = 43/138 (31%), Positives = 73/138 (52%), Gaps = 1/138 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GIDPGL R G+G++D+ + G I + +S R+ ++ L +I+ WR
Sbjct: 1 MRILGIDPGLARVGYGVIDIQDGCQRMLDCGIIQTNSDRSDGDRMVEIAGDLRQLIRIWR 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
PE AAVE+ F + + + QAR + +++ A +IP+ E+ P IK AV G GH +K
Sbjct: 61 PELAAVEKFFFYRSSNTINVV-QARGVVVMTLARFKIPMVEFPPMQIKLAVAGFGHAEKD 119
Query: 125 QIHMMLKMLMPESFFKGK 142
++ + +
Sbjct: 120 EVLEAVMRELSLEEPPRP 137
>gi|218780989|ref|YP_002432307.1| crossover junction endodeoxyribonuclease [Desulfatibacillum
alkenivorans AK-01]
gi|218762373|gb|ACL04839.1| Crossover junction endodeoxyribonuclease [Desulfatibacillum
alkenivorans AK-01]
Length = 168
Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats.
Identities = 49/168 (29%), Positives = 84/168 (50%), Gaps = 6/168 (3%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
++++GIDPGL TG +V+ + S GTI + L RL +Y+ + +V + R
Sbjct: 1 MKVLGIDPGLAATGLALVNGTSTQVFGYSFGTITTPPESPLTDRLIHIYDRIREVAEAER 60
Query: 65 PEEAAVEQVF-VNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
P+ VE +F + K + + LG+ +++ RIPV E A +KK + G G DK
Sbjct: 61 PDLMVVEDIFSLGKYPKSGITLGKVTGAILVAGRHGRIPVREVAVREVKKILTGNGAADK 120
Query: 124 KQIHMMLK-MLMPESFFKGKDAADALAIAVCHAYHA----NSGYYKIA 166
Q+ ++ L E + A+DA+A+A+ Y +G +I+
Sbjct: 121 NQLERAVRQRLGREEAIRPSHASDAMALALIGLYRGDHYLRNGLDRIS 168
>gi|262202230|ref|YP_003273438.1| crossover junction endodeoxyribonuclease RuvC [Gordonia bronchialis
DSM 43247]
gi|262085577|gb|ACY21545.1| crossover junction endodeoxyribonuclease RuvC [Gordonia bronchialis
DSM 43247]
Length = 189
Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats.
Identities = 47/156 (30%), Positives = 78/156 (50%), Gaps = 2/156 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R++G+DPGL R G +V+ G + + + + LA RL +Y I
Sbjct: 1 MRVMGVDPGLTRCGIALVESGRGRAVTALDVDVVRTPTDMELADRLLAVYTAACHWIDVH 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
+P+ A+E+VF + QA + L+ IPV + P+ +K AV G G DK
Sbjct: 61 QPDVVAIERVFAQNQVSTAMGTAQAGGVIALAAGQRGIPVRFHTPSEVKAAVTGSGRADK 120
Query: 124 KQIHMMLKMLMP-ESFFKGKDAADALAIAVCHAYHA 158
Q+ M+ ++ ++ + DAADALA+A+CH +
Sbjct: 121 AQVTAMVTRILGMQTKPRPADAADALALAICHCWRG 156
>gi|124026239|ref|YP_001015355.1| crossover junction endodeoxyribonuclease RuvC [Prochlorococcus
marinus str. NATL1A]
gi|166233281|sp|A2C3N0|RUVC_PROM1 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|123961307|gb|ABM76090.1| Crossover junction endodeoxyribonuclease RuvC [Prochlorococcus
marinus str. NATL1A]
Length = 154
Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats.
Identities = 44/136 (32%), Positives = 71/136 (52%), Gaps = 1/136 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RIIGIDPGL R G+GI+D + G I + + RL ++ L+ +IK W
Sbjct: 1 MRIIGIDPGLARVGYGIIDEIEGKKIMIDCGIIETKSTKKEEERLVEISNDLSSIIKKWN 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P AAVE+ F + T+ + QAR + +++ ++P+ E+ P IK AV G GH DK
Sbjct: 61 PNSAAVEKFFFYRS-STTISVVQARGVIMMTLGKYKLPIQEFPPMQIKLAVTGYGHSDKN 119
Query: 125 QIHMMLKMLMPESFFK 140
++ + + +
Sbjct: 120 EVLNCVMHELSITSPP 135
>gi|183222663|ref|YP_001840659.1| putative crossover junction endodeoxyribonuclease RuvC [Leptospira
biflexa serovar Patoc strain 'Patoc 1 (Paris)']
gi|189912695|ref|YP_001964250.1| crossover junction endoribonuclease [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Ames)']
gi|167777371|gb|ABZ95672.1| Crossover junction endoribonuclease [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Ames)']
gi|167781085|gb|ABZ99383.1| Putative crossover junction endodeoxyribonuclease RuvC (Holliday
junction nuclease ruvC) [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Paris)']
Length = 158
Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats.
Identities = 42/151 (27%), Positives = 79/151 (52%), Gaps = 4/151 (2%)
Query: 5 IRIIGIDPGLRRTGWGIV---DVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
++IIGIDPG R G+ ++ + N ++ GTI + L Q+ L ++
Sbjct: 1 MKIIGIDPGSHRVGYAVLSFPEGMRRNPELLAYGTIEVAPKTPSPVNLLQIRSELQKILS 60
Query: 62 NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
++PE AAVE++F ++ +K+ ++R + +L+ +IP+ IKK + G+
Sbjct: 61 LYQPEHAAVEELFFVQNTTTGMKVSESRGVILLTLGENQIPMVSLTATQIKKGISAKGNA 120
Query: 122 DKKQIHMMLKMLMPESFFKG-KDAADALAIA 151
KK++ ++M++ KG D+ DA+A A
Sbjct: 121 TKKEVRAAIQMILGFKDLKGHDDSWDAIACA 151
>gi|261855147|ref|YP_003262430.1| crossover junction endodeoxyribonuclease RuvC [Halothiobacillus
neapolitanus c2]
gi|261835616|gb|ACX95383.1| crossover junction endodeoxyribonuclease RuvC [Halothiobacillus
neapolitanus c2]
Length = 188
Score = 124 bits (313), Expect = 3e-27, Method: Composition-based stats.
Identities = 54/160 (33%), Positives = 85/160 (53%), Gaps = 1/160 (0%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M + +R++GIDPG G ++D + + ++ S RL +Y + +I
Sbjct: 1 MAR-LRVMGIDPGSVTMGVAVLDFERGSATQIHLQSVSLKPHGSFTARLGAIYAEVDRLI 59
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
P+E A+EQ+F+ + ++LKL QAR +AI + + V EY P +K+AV+G G
Sbjct: 60 DTHAPDEFAIEQIFMYRSPESSLKLAQARGVAIAAAVGHGLTVHEYMPAVVKQAVVGTGR 119
Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
DK Q+ M+K L+ S D ADA A+A+CH Y S
Sbjct: 120 ADKLQVQHMIKRLLSLSESPPADGADAAAVALCHCYRRTS 159
>gi|254821997|ref|ZP_05226998.1| Holliday junction resolvase [Mycobacterium intracellulare ATCC
13950]
Length = 184
Score = 124 bits (313), Expect = 3e-27, Method: Composition-based stats.
Identities = 47/156 (30%), Positives = 77/156 (49%), Gaps = 2/156 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R++G+DPGL R G +V+ G + + + + LA RL + + + +
Sbjct: 1 MRVMGVDPGLTRCGLSVVESGRGRTVVALDVDVVRTPSDAPLAERLLTISDAVEHWLATH 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
P+ AVE+VF + + QA + L+ A I V + P+ +K AV G G DK
Sbjct: 61 EPDVMAVERVFSQLNVSTVMGTAQAGGVVALAAARRGIDVHFHTPSEVKAAVTGNGAADK 120
Query: 124 KQIHMMLKMLMPES-FFKGKDAADALAIAVCHAYHA 158
Q+ M+ ++ DAADALA+A+CH + A
Sbjct: 121 AQVTAMVTRILALQAKPTPADAADALALAICHCWRA 156
>gi|21232456|ref|NP_638373.1| Holliday junction resolvase [Xanthomonas campestris pv. campestris
str. ATCC 33913]
gi|66767460|ref|YP_242222.1| Holliday junction resolvase [Xanthomonas campestris pv. campestris
str. 8004]
gi|188990566|ref|YP_001902576.1| Holliday junction resolvase [Xanthomonas campestris pv. campestris
str. B100]
gi|24638204|sp|Q8P6E4|RUVC_XANCP RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|81306560|sp|Q4UXM1|RUVC_XANC8 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|229558765|sp|B0RPY3|RUVC_XANCB RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|21114238|gb|AAM42297.1| holliday junction resolvase, endodeoxyribonuclease [Xanthomonas
campestris pv. campestris str. ATCC 33913]
gi|66572792|gb|AAY48202.1| holliday junction resolvase, endodeoxyribonuclease [Xanthomonas
campestris pv. campestris str. 8004]
gi|167732326|emb|CAP50518.1| holliday junction resolvase [Xanthomonas campestris pv. campestris]
Length = 174
Score = 124 bits (313), Expect = 3e-27, Method: Composition-based stats.
Identities = 64/158 (40%), Positives = 92/158 (58%), Gaps = 1/158 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
RI+GIDPG +RTG GI+DV V +V A RL +L GL ++I+ ++
Sbjct: 3 RILGIDPGSQRTGIGIIDVDESGRSRHVFHAPLVLLGEGDFAQRLKRLLHGLGELIETYQ 62
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+E A+E+VF+ K A + LKLG AR AI + L +PV EYA IK A++G G DK
Sbjct: 63 PQEVAIEKVFMGKSADSALKLGHARGAAICAVVLRDLPVHEYAATEIKLALVGKGGADKV 122
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGY 162
Q+ M+ +++ DAADALA+A+ HA+ +
Sbjct: 123 QVQHMVGIMLNLKGKLQADAADALAVAITHAHVRATAQ 160
>gi|323180660|gb|EFZ66205.1| crossover junction endodeoxyribonuclease RuvC [Escherichia coli
1180]
Length = 161
Score = 124 bits (313), Expect = 3e-27, Method: Composition-based stats.
Identities = 45/125 (36%), Positives = 75/125 (60%), Gaps = 1/125 (0%)
Query: 17 TGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVN 76
TG+G++ G L ++ SG I + L RL +Y G+T++I ++P+ A+EQVF+
Sbjct: 2 TGYGVIRQVGRQLSYLGSGCIRT-KVDDLPSRLKLIYAGVTEIITQFQPDYFAIEQVFMA 60
Query: 77 KDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPE 136
K+A + LKLGQAR +AI++ +PV EYA +K+ V+G+G +K Q+ M++ L+
Sbjct: 61 KNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQVQHMVRTLLKL 120
Query: 137 SFFKG 141
Sbjct: 121 PANPQ 125
>gi|271967391|ref|YP_003341587.1| Crossover junction endodeoxyribonuclease [Streptosporangium roseum
DSM 43021]
gi|270510566|gb|ACZ88844.1| Crossover junction endodeoxyribonuclease [Streptosporangium roseum
DSM 43021]
Length = 200
Score = 124 bits (312), Expect = 3e-27, Method: Composition-based stats.
Identities = 56/171 (32%), Positives = 89/171 (52%), Gaps = 4/171 (2%)
Query: 1 MRKS-IRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTD 58
MR +R++G+DPGL R G G V+ G L V G + + + RL + G+
Sbjct: 1 MRLPELRVMGVDPGLTRCGLGAVEGRPGAPLSLVKVGVVRTPADDEIGARLVAIEAGIEQ 60
Query: 59 VIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGV 118
+ RP+ AVE+VF + + QA A+AIL + +PV+ + P+ +K A+ G
Sbjct: 61 WLDEIRPDAVAVERVFAQHNLRTVMGTAQASAVAILCASRRGLPVAMHTPSEVKAAITGS 120
Query: 119 GHGDKKQIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
G DK+Q+ M+ L+ + K DAADALA+A+CH + ++A
Sbjct: 121 GTADKQQVGTMVTRLLRLDAMPKPADAADALALAICHVWRGG-AQNRLAEA 170
>gi|227833243|ref|YP_002834950.1| crossover junction endodeoxyribonuclease [Corynebacterium
aurimucosum ATCC 700975]
gi|227454259|gb|ACP33012.1| crossover junction endodeoxyribonuclease [Corynebacterium
aurimucosum ATCC 700975]
Length = 226
Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats.
Identities = 40/135 (29%), Positives = 71/135 (52%), Gaps = 1/135 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R++GIDPGL R G +V G + ++ G + + + L RL L + + + ++
Sbjct: 29 LRVMGIDPGLTRCGLSVVQAGRGRGVIPIAVGVVRTPSDKDLGERLKLLSVAVREWMDDY 88
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
+P+ A+E+VF ++ A + +L+ A IPV Y P+ +KKA+ G G DK
Sbjct: 89 KPDVVALERVFERGQVSTVMQTAHAVGVLVLAAAERDIPVHMYTPSEVKKAISGNGRADK 148
Query: 124 KQIHMMLKMLMPESF 138
KQ+ M+ ++ S
Sbjct: 149 KQMTAMITRILGLSE 163
>gi|285808234|gb|ADC35768.1| crossover junction endodeoxyribonuclease RuvC [uncultured bacterium
293]
Length = 167
Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats.
Identities = 58/163 (35%), Positives = 88/163 (53%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ I+G+DPG R TG+G ++ G + G + RQ L RL ++E L +I R
Sbjct: 1 MIILGVDPGSRHTGYGAIESDGRRHHLLEKGVLSPAPRQDLPLRLHFIHERLAALIVRLR 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P AVE VF + A + L LGQ R + +L+ A A + V + P T+K V G G +K
Sbjct: 61 PAAMAVEDVFHAQSARSALVLGQVRGVVLLAGAQAGLDVRSFPPATVKLQVTGHGQAEKA 120
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
Q+ +M+ L+ + DAADALA+A+CHA+ + +A
Sbjct: 121 QVALMVSHLLALPAQEAGDAADALAVALCHAHCSGPLAAVLAG 163
>gi|227496224|ref|ZP_03926521.1| crossover junction endodeoxyribonuclease RuvC [Actinomyces
urogenitalis DSM 15434]
gi|226834239|gb|EEH66622.1| crossover junction endodeoxyribonuclease RuvC [Actinomyces
urogenitalis DSM 15434]
Length = 167
Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats.
Identities = 48/152 (31%), Positives = 77/152 (50%), Gaps = 2/152 (1%)
Query: 8 IGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
+G+DPGL R G G VD+ V G + + S RL + + L D I P
Sbjct: 2 LGVDPGLTRCGLGCVDIDARRRARLVEVGVVRTPPSMSPELRLAAIADALDDWIARLGPT 61
Query: 67 EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
+VE+VF + + + + Q + +++ A A + V+++ P+ K AV G G DK Q+
Sbjct: 62 SVSVERVFAQDNLRSVISVAQVMGVVMVAGARAGLEVAQHTPSEAKAAVTGSGTADKPQV 121
Query: 127 HMMLKMLMPE-SFFKGKDAADALAIAVCHAYH 157
M+ ++ + K DAADALA A+CH +
Sbjct: 122 QAMVARILGLDAPPKPADAADALAQAICHGWR 153
>gi|325284122|ref|YP_004256663.1| Crossover junction endodeoxyribonuclease ruvC [Deinococcus
proteolyticus MRP]
gi|324315931|gb|ADY27046.1| Crossover junction endodeoxyribonuclease ruvC [Deinococcus
proteolyticus MRP]
Length = 178
Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats.
Identities = 37/139 (26%), Positives = 68/139 (48%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+R++G+DPGL G G+VD + + + Q + RL L+ ++ VI ++
Sbjct: 1 MRVLGVDPGLANLGLGVVDGDVRRAVCLHQECVTTPSSQEMGQRLLTLHRHVSAVIDEFQ 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ A+E + + A K+GQA + L+ +PV Y P +KKA++G G +K+
Sbjct: 61 PDAVALEDQILRRQADVAFKVGQAYGVVQLTCGQRGLPVYGYGPMQVKKALVGTGRAEKE 120
Query: 125 QIHMMLKMLMPESFFKGKD 143
Q+ M++ +
Sbjct: 121 QVIYMVRANLGLRALTNNH 139
>gi|296393858|ref|YP_003658742.1| crossover junction endodeoxyribonuclease RuvC [Segniliparus
rotundus DSM 44985]
gi|296181005|gb|ADG97911.1| crossover junction endodeoxyribonuclease RuvC [Segniliparus
rotundus DSM 44985]
Length = 189
Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats.
Identities = 37/133 (27%), Positives = 67/133 (50%), Gaps = 1/133 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R++G+DPGL R G +V+ +G ++ + + + SL RL ++ + + +
Sbjct: 1 MRVMGVDPGLTRCGLALVETGSGRSVTALDVDVCHTSPQASLQDRLSKIAAEVEHWLDSH 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
RP+ AVEQVF + + + Q + L A IP+ + P+ +K AV G G DK
Sbjct: 61 RPDVVAVEQVFAQHNVRTVMGVAQVSGVVALLSAKRSIPMRTHTPSEVKAAVTGNGRADK 120
Query: 124 KQIHMMLKMLMPE 136
Q+ M+ ++
Sbjct: 121 DQVTAMVTRILGL 133
>gi|84496342|ref|ZP_00995196.1| Holliday junction resolvase [Janibacter sp. HTCC2649]
gi|84383110|gb|EAP98991.1| Holliday junction resolvase [Janibacter sp. HTCC2649]
Length = 165
Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats.
Identities = 50/149 (33%), Positives = 74/149 (49%), Gaps = 1/149 (0%)
Query: 11 DPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAV 70
DPGL R G G+VD V+ G + + + RL L L + + P+ AV
Sbjct: 2 DPGLTRCGLGVVDGRAGRATMVAVGVVRTPSDAVPSQRLIFLERELDGWLDKFTPDVMAV 61
Query: 71 EQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMML 130
E+VF + + + A AIA+L+ IPV + P +K +V G G DK Q+ M+
Sbjct: 62 ERVFADTNVTQVMNTAHATAIALLTAGKRGIPVVFHTPTEVKASVTGSGRADKAQVTAMV 121
Query: 131 KMLMPE-SFFKGKDAADALAIAVCHAYHA 158
++ S K DAADALA+A+CH +
Sbjct: 122 TRILKLDSPPKPADAADALALAICHLWRG 150
>gi|311742329|ref|ZP_07716138.1| crossover junction endoribonuclease subunit C [Aeromicrobium
marinum DSM 15272]
gi|311313957|gb|EFQ83865.1| crossover junction endoribonuclease subunit C [Aeromicrobium
marinum DSM 15272]
Length = 169
Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats.
Identities = 40/132 (30%), Positives = 64/132 (48%), Gaps = 1/132 (0%)
Query: 8 IGIDPGLRRTGWGIVD-VAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
+GIDPGL R G G+V+ G L + + + A RL L +G+ + + RP+
Sbjct: 1 MGIDPGLTRLGLGVVEGSVGRPLTMLDVDVLRTPADLDPARRLRILADGIEERLLLHRPD 60
Query: 67 EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
AVE+VF + + Q +A++ A I V + P+ +K AV G G DK Q+
Sbjct: 61 AVAVERVFSQHNVRTVMGTAQVSGVAMMLAARHGIEVHLHTPSEVKAAVTGSGRADKAQV 120
Query: 127 HMMLKMLMPESF 138
M+ L+ +
Sbjct: 121 TQMVTRLLRLTE 132
>gi|158338360|ref|YP_001519537.1| Holliday junction resolvase [Acaryochloris marina MBIC11017]
gi|189046057|sp|B0C9S0|RUVC_ACAM1 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|158308601|gb|ABW30218.1| crossover junction endodeoxyribonuclease RuvC [Acaryochloris marina
MBIC11017]
Length = 156
Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats.
Identities = 42/142 (29%), Positives = 71/142 (50%), Gaps = 3/142 (2%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M K +I+G+DPGL G+G++ DNL + G I + + + RL +YE L V+
Sbjct: 1 MTK--KILGLDPGLASLGFGVICTESDNLELLDFGIIQTPAKTDIGKRLQIIYEDLHQVL 58
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
+P+ A+E++F + T+ + QAR + +L A ++P+ EY P IK A+ G G
Sbjct: 59 NTHQPDVVAIEKLFFYR-MGNTILVAQARGVVLLVLAQHQLPIIEYTPAQIKLALTGYGA 117
Query: 121 GDKKQIHMMLKMLMPESFFKGK 142
DK + + +
Sbjct: 118 ADKVAVQEAVARELCLDCLPRP 139
>gi|262184229|ref|ZP_06043650.1| crossover junction endodeoxyribonuclease [Corynebacterium
aurimucosum ATCC 700975]
Length = 203
Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats.
Identities = 40/135 (29%), Positives = 71/135 (52%), Gaps = 1/135 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R++GIDPGL R G +V G + ++ G + + + L RL L + + + ++
Sbjct: 6 LRVMGIDPGLTRCGLSVVQAGRGRGVIPIAVGVVRTPSDKDLGERLKLLSVAVREWMDDY 65
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
+P+ A+E+VF ++ A + +L+ A IPV Y P+ +KKA+ G G DK
Sbjct: 66 KPDVVALERVFERGQVSTVMQTAHAVGVLVLAAAERDIPVHMYTPSEVKKAISGNGRADK 125
Query: 124 KQIHMMLKMLMPESF 138
KQ+ M+ ++ S
Sbjct: 126 KQMTAMITRILGLSE 140
>gi|38233962|ref|NP_939729.1| Holliday junction resolvase [Corynebacterium diphtheriae NCTC
13129]
gi|81564835|sp|Q6NGX3|RUVC_CORDI RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|38200224|emb|CAE49908.1| crossover junction endodeoxyribonuclease [Corynebacterium
diphtheriae]
Length = 163
Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats.
Identities = 38/130 (29%), Positives = 67/130 (51%), Gaps = 1/130 (0%)
Query: 8 IGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
+GIDPGL R G +V G ++ V+ G + + L+ RL +L E + I ++P+
Sbjct: 1 MGIDPGLTRCGLSVVQAGKGRSVIPVAVGVVRTPPHAELSQRLLELSEAVNSWIDEYQPD 60
Query: 67 EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
A+E++F + + + +L+ A +PV Y P+ +KKA+ G G DKKQ+
Sbjct: 61 VVAIERIFERGNVSTVMNTAHGVGVLVLAAAQRGLPVHMYTPSEVKKAISGNGRADKKQM 120
Query: 127 HMMLKMLMPE 136
M+ ++
Sbjct: 121 TAMITRILGL 130
>gi|45658715|ref|YP_002801.1| putative holliday junction endodeoxyribonuclease protein
[Leptospira interrogans serovar Copenhageni str. Fiocruz
L1-130]
gi|45601959|gb|AAS71438.1| putative holliday junction endodeoxyribonuclease protein
[Leptospira interrogans serovar Copenhageni str. Fiocruz
L1-130]
Length = 190
Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats.
Identities = 46/149 (30%), Positives = 79/149 (53%), Gaps = 1/149 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RIIGIDPG R G+ +++ + ++ GT+ L L +GL ++++ +
Sbjct: 27 LRIIGIDPGSHRAGYAVLEKNASKIKILNYGTVEVPSGTPSPDNLLMLRKGLREILEEFN 86
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P A+VE++F K+ ++ ++R + +++ A I + E + IKK G G DKK
Sbjct: 87 PSIASVEEMFFAKNKKTASRVFESRGVLLVTLAELNIRILEPTVSQIKKGTTGSGTADKK 146
Query: 125 QIHMMLKMLMPESFFKG-KDAADALAIAV 152
QI LK+L+ KG D+ DA+A A
Sbjct: 147 QIRHALKLLLNVELLKGHDDSWDAIAAAY 175
>gi|54025667|ref|YP_119909.1| Holliday junction resolvase [Nocardia farcinica IFM 10152]
gi|81602597|sp|Q5YTE6|RUVC_NOCFA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|54017175|dbj|BAD58545.1| putative Holliday junction nuclease [Nocardia farcinica IFM 10152]
Length = 189
Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats.
Identities = 37/134 (27%), Positives = 64/134 (47%), Gaps = 1/134 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R++G+DPGL R G +V+ G + + + + LA RL + + +
Sbjct: 1 MRVMGVDPGLTRCGLSMVEGGHGRTVTALDVDVVRTPADMDLAHRLMLVADAAEYWMDTH 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
RP A+E+VF + + QA + L+ A IPV + P+ +K AV G G+ DK
Sbjct: 61 RPGAVAIERVFAQHNVRTAMGTAQAGGVIALAAARRDIPVVFHTPSEVKAAVTGNGNADK 120
Query: 124 KQIHMMLKMLMPES 137
Q+ M+ ++
Sbjct: 121 AQVTAMVTRILGLQ 134
>gi|293192651|ref|ZP_06609605.1| crossover junction endodeoxyribonuclease RuvC [Actinomyces
odontolyticus F0309]
gi|292820158|gb|EFF79155.1| crossover junction endodeoxyribonuclease RuvC [Actinomyces
odontolyticus F0309]
Length = 209
Score = 124 bits (311), Expect = 6e-27, Method: Composition-based stats.
Identities = 40/133 (30%), Positives = 67/133 (50%), Gaps = 1/133 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R++GIDPGL R G G+VDV V G + + FRL + + + VI+ +
Sbjct: 1 MRVMGIDPGLTRCGLGVVDVDASRRASLVYVGVARTDKDLATHFRLRAIADAIDSVIERY 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
PE A+E+VF + + Q A+ A +P++ + P+ +K AV G G+ DK
Sbjct: 61 EPEVVAIERVFAQDNLQSVTTTMQVMGAAMTCVGRAGLPMAVHTPSEVKSAVSGNGNADK 120
Query: 124 KQIHMMLKMLMPE 136
Q+ M+ ++
Sbjct: 121 AQVQAMVARILGL 133
>gi|225164199|ref|ZP_03726474.1| Crossover junction endodeoxyribonuclease [Opitutaceae bacterium
TAV2]
gi|224801173|gb|EEG19494.1| Crossover junction endodeoxyribonuclease [Opitutaceae bacterium
TAV2]
Length = 195
Score = 124 bits (311), Expect = 6e-27, Method: Composition-based stats.
Identities = 47/152 (30%), Positives = 76/152 (50%), Gaps = 1/152 (0%)
Query: 7 IIGIDPGLRRTGWGIVD-VAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
++GIDP LR TG +V+ AG + T+ R ++ L +++ +T I +
Sbjct: 41 VLGIDPSLRGTGLALVEFAAGRRPLLLRCQTLRIPARVPMSGALAEIHRAVTTFITEFTV 100
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
A+EQ ++ LG AR AI + A+ + EYAP +K+AV+G G K+Q
Sbjct: 101 RHVALEQTIYVQNFQTAQILGAARGAAIAAAAVLGKDIYEYAPLRVKQAVVGAGRASKEQ 160
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYH 157
+ + L+ D ADA+ +A+CHAY
Sbjct: 161 MARTVMALLGHGRPLASDEADAVGVALCHAYT 192
>gi|114570974|ref|YP_757654.1| Holliday junction endonuclease RuvC [Maricaulis maris MCS10]
gi|122315333|sp|Q0ALX7|RUVC_MARMM RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|114341436|gb|ABI66716.1| Holliday junction endonuclease RuvC [Maricaulis maris MCS10]
Length = 166
Score = 124 bits (311), Expect = 6e-27, Method: Composition-based stats.
Identities = 70/167 (41%), Positives = 105/167 (62%), Gaps = 1/167 (0%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M S+RI+GIDPGLRR GWG++ V G L ++ G + L+ RL L+ + D++
Sbjct: 1 MALSVRILGIDPGLRRMGWGVIRVEGSRLSAIAHGVVTPPTAAPLSERLMHLFNSVGDLV 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
+ P+EAA+E+ F+ +A + LKLG ARA A+L+PA A +PV+EYA +KK+V+G G
Sbjct: 61 RQHGPDEAAIEEAFMAANAASALKLGHARAAAMLAPARAGLPVAEYAARLVKKSVVGTGA 120
Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIAS 167
DK Q+ M+ +L+P + A ALAIA+CHA+H + A+
Sbjct: 121 ADKAQVAAMVGILLPGTKATADAAD-ALAIAICHAHHRRATSLGSAA 166
>gi|154508895|ref|ZP_02044537.1| hypothetical protein ACTODO_01406 [Actinomyces odontolyticus ATCC
17982]
gi|153798529|gb|EDN80949.1| hypothetical protein ACTODO_01406 [Actinomyces odontolyticus ATCC
17982]
Length = 209
Score = 123 bits (310), Expect = 7e-27, Method: Composition-based stats.
Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 1/133 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R++GIDPGL R G G+VDV V G + + FRL + + + VI+ +
Sbjct: 1 MRVMGIDPGLTRCGLGVVDVDASRRASLVYVGVARTDKDLATHFRLRTIADAIDSVIERY 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
PE AA+E+VF + + Q A+ A +P++ + P+ +K AV G G+ DK
Sbjct: 61 EPEVAAIERVFAQDNLQSVTTTMQVMGAAMTCVGRAGLPMAVHTPSEVKSAVSGNGNADK 120
Query: 124 KQIHMMLKMLMPE 136
Q+ M+ ++
Sbjct: 121 AQVQAMVARILGL 133
>gi|308371067|ref|ZP_07423718.2| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
tuberculosis SUMu003]
gi|308372345|ref|ZP_07428318.2| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
tuberculosis SUMu004]
gi|308375541|ref|ZP_07444274.2| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
tuberculosis SUMu007]
gi|308378400|ref|ZP_07482469.2| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
tuberculosis SUMu009]
gi|308405830|ref|ZP_07494395.2| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
tuberculosis SUMu012]
gi|308329915|gb|EFP18766.1| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
tuberculosis SUMu003]
gi|308333530|gb|EFP22381.1| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
tuberculosis SUMu004]
gi|308346002|gb|EFP34853.1| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
tuberculosis SUMu007]
gi|308352725|gb|EFP41576.1| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
tuberculosis SUMu009]
gi|308365152|gb|EFP54003.1| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
tuberculosis SUMu012]
Length = 185
Score = 123 bits (310), Expect = 7e-27, Method: Composition-based stats.
Identities = 46/163 (28%), Positives = 78/163 (47%), Gaps = 3/163 (1%)
Query: 8 IGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
+G+DPGL R G +++ G L + + + +LA RL + + + + PE
Sbjct: 1 MGVDPGLTRCGLSLIESGRGRQLTALDVDVVRTPSDAALAQRLLAISDAVEHWLDTHHPE 60
Query: 67 EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
A+E+VF + + QA + L+ A + V + P+ +K AV G G DK Q+
Sbjct: 61 VVAIERVFSQLNVTTVMGTAQAGGVIALAAAKRGVDVHFHTPSEVKAAVTGNGSADKAQV 120
Query: 127 HMMLKMLMPES-FFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
M+ ++ DAADALA+A+CH + A ++A
Sbjct: 121 TAMVTKILALQAKPTPADAADALALAICHCWRA-PTIARMAEA 162
>gi|41407134|ref|NP_959970.1| Holliday junction resolvase [Mycobacterium avium subsp.
paratuberculosis K-10]
gi|118464158|ref|YP_882657.1| Holliday junction resolvase [Mycobacterium avium 104]
gi|81571427|sp|Q741Q2|RUVC_MYCPA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|166233268|sp|A0QIB9|RUVC_MYCA1 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|41395485|gb|AAS03353.1| RuvC [Mycobacterium avium subsp. paratuberculosis K-10]
gi|118165445|gb|ABK66342.1| crossover junction endodeoxyribonuclease RuvC [Mycobacterium avium
104]
Length = 188
Score = 123 bits (310), Expect = 7e-27, Method: Composition-based stats.
Identities = 46/167 (27%), Positives = 82/167 (49%), Gaps = 3/167 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R++G+DPGL R G +V+ G + + + + LA RL + + + +
Sbjct: 1 MRVMGVDPGLTRCGLSVVESGRGRTVVALDVDVVRTPSDAPLAERLLSISDAVEHWLATH 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
+P+ A+E+VF + + QA + L+ A I V + P+ +K AV G G +K
Sbjct: 61 QPDVVAIERVFSQLNVTTVMGTAQAGGVVALAAAKRGIGVHFHTPSEVKAAVTGNGAANK 120
Query: 124 KQIHMMLKMLMPES-FFKGKDAADALAIAVCHAYHANSGYYKIASQD 169
Q+ M+ ++ DAADALA+A+CH + A ++A +
Sbjct: 121 AQVTAMVTRILALQAKPTPADAADALALAICHCWRA-PMIARMARAE 166
>gi|296139643|ref|YP_003646886.1| crossover junction endodeoxyribonuclease RuvC [Tsukamurella
paurometabola DSM 20162]
gi|296027777|gb|ADG78547.1| crossover junction endodeoxyribonuclease RuvC [Tsukamurella
paurometabola DSM 20162]
Length = 215
Score = 123 bits (309), Expect = 8e-27, Method: Composition-based stats.
Identities = 35/135 (25%), Positives = 64/135 (47%), Gaps = 1/135 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R++G+DPGL R G+ +V+ +G + + + + L RL ++ +
Sbjct: 1 MRVMGVDPGLTRCGFSVVETGSGRKVVALDVDVVRTPSTMPLPERLLAVWTAAEFWMDTH 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
RP+ AVE+VF + + QA + L+ A I V + P+ +K AV G G+ K
Sbjct: 61 RPDVIAVERVFAQHNVSTAMGTAQAGGVVALAAARRGIDVHFHTPSEVKAAVTGNGNAGK 120
Query: 124 KQIHMMLKMLMPESF 138
Q+ M+ ++
Sbjct: 121 AQVTAMITKILGLQK 135
>gi|240173172|ref|ZP_04751830.1| Holliday junction resolvase [Mycobacterium kansasii ATCC 12478]
Length = 181
Score = 123 bits (309), Expect = 8e-27, Method: Composition-based stats.
Identities = 49/164 (29%), Positives = 81/164 (49%), Gaps = 3/164 (1%)
Query: 8 IGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
+G+DPGL R G +V+ G +L + + + +L+ RL + E + + RP+
Sbjct: 1 MGVDPGLTRCGLSLVESGRGRDLVALDVDVVRTPSDTALSKRLLAINEAVEHWLDTHRPD 60
Query: 67 EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
A+E+VF + + QA + L+ A I V + P+ +K AV G G DK Q+
Sbjct: 61 VLAIERVFSQLNVTTVMGTAQAGGVIALAAAKRDIDVHFHTPSEVKAAVTGNGAADKAQV 120
Query: 127 HMMLKMLMPES-FFKGKDAADALAIAVCHAYHANSGYYKIASQD 169
M+ ++ DAADALA+A+CH + A +IA +
Sbjct: 121 TAMVTRILALQAKPTPADAADALALAICHCWRA-PMIARIARAE 163
>gi|254775924|ref|ZP_05217440.1| Holliday junction resolvase [Mycobacterium avium subsp. avium ATCC
25291]
Length = 188
Score = 123 bits (309), Expect = 8e-27, Method: Composition-based stats.
Identities = 46/167 (27%), Positives = 82/167 (49%), Gaps = 3/167 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R++G+DPGL R G +V+ G + + + + LA RL + + + +
Sbjct: 1 MRVMGVDPGLTRCGLSVVESGRGRTVVALDVDVVRTPSEAPLAERLLSISDAVEHWLATH 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
+P+ A+E+VF + + QA + L+ A I V + P+ +K AV G G +K
Sbjct: 61 QPDVVAIERVFSQLNVTTVMGTAQAGGVVALAAAKRGIGVHFHTPSEVKAAVTGNGAANK 120
Query: 124 KQIHMMLKMLMPES-FFKGKDAADALAIAVCHAYHANSGYYKIASQD 169
Q+ M+ ++ DAADALA+A+CH + A ++A +
Sbjct: 121 AQVTAMVTRILALQAKPTPADAADALALAICHCWRA-PMIARMARAE 166
>gi|308232187|ref|ZP_07415205.2| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
tuberculosis SUMu001]
gi|308369765|ref|ZP_07418969.2| crossover junction endodeoxyribonuclease RuvC [Mycobacterium
tuberculosis SUMu002]
gi|308214723|gb|EFO74122.1| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
tuberculosis SUMu001]
gi|308326463|gb|EFP15314.1| crossover junction endodeoxyribonuclease RuvC [Mycobacterium
tuberculosis SUMu002]
Length = 186
Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats.
Identities = 46/163 (28%), Positives = 78/163 (47%), Gaps = 3/163 (1%)
Query: 8 IGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
+G+DPGL R G +++ G L + + + +LA RL + + + + PE
Sbjct: 2 MGVDPGLTRCGLSLIESGRGRQLTALDVDVVRTPSDAALAQRLLAISDAVEHWLDTHHPE 61
Query: 67 EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
A+E+VF + + QA + L+ A + V + P+ +K AV G G DK Q+
Sbjct: 62 VVAIERVFSQLNVTTVMGTAQAGGVIALAAAKRGVDVHFHTPSEVKAAVTGNGSADKAQV 121
Query: 127 HMMLKMLMPES-FFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
M+ ++ DAADALA+A+CH + A ++A
Sbjct: 122 TAMVTKILALQAKPTPADAADALALAICHCWRA-PTIARMAEA 163
>gi|221632807|ref|YP_002522029.1| crossover junction endodeoxyribonuclease RuvC [Thermomicrobium
roseum DSM 5159]
gi|254767486|sp|B9KZ87|RUVC_THERP RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|221156400|gb|ACM05527.1| crossover junction endodeoxyribonuclease RuvC [Thermomicrobium
roseum DSM 5159]
Length = 163
Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats.
Identities = 42/127 (33%), Positives = 76/127 (59%), Gaps = 1/127 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+R++G+DPG+ G+G+V+ G+ L +S G + + + RL L++ L ++++W+
Sbjct: 1 MRVLGVDPGMALLGYGVVE-GGEPLRALSFGVVSTPAHLPVERRLVVLHDELAQLLEHWQ 59
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ A+EQ+F ++ L +GQAR I +L IPV EY P +K+AV G G K+
Sbjct: 60 PDVVALEQLFFARNVTTALAVGQARGIVLLLCGQRTIPVVEYTPAQVKQAVGGYGRARKR 119
Query: 125 QIHMMLK 131
++ M++
Sbjct: 120 EMQEMVR 126
>gi|108799232|ref|YP_639429.1| Holliday junction resolvase [Mycobacterium sp. MCS]
gi|119868348|ref|YP_938300.1| Holliday junction resolvase [Mycobacterium sp. KMS]
gi|126434890|ref|YP_001070581.1| Holliday junction resolvase [Mycobacterium sp. JLS]
gi|108769651|gb|ABG08373.1| Holliday junction endonuclease RuvC [Mycobacterium sp. MCS]
gi|119694437|gb|ABL91510.1| Holliday junction endonuclease RuvC [Mycobacterium sp. KMS]
gi|126234690|gb|ABN98090.1| Holliday junction endonuclease RuvC [Mycobacterium sp. JLS]
Length = 193
Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats.
Identities = 45/150 (30%), Positives = 74/150 (49%), Gaps = 2/150 (1%)
Query: 11 DPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAA 69
DPGL R G +++ G + + + + + L RL + + + + RP+ A
Sbjct: 15 DPGLTRCGLSVIESGQGRKVIALDVDVVRTPADEQLHRRLLIISDTVEHWMDTHRPDVIA 74
Query: 70 VEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMM 129
+E+VF N +A + QA + L+ A I V + P+ +K AV G G DK Q+ M
Sbjct: 75 IERVFANHNANTAMGTAQAGGVIALAAAKRDIDVHFHTPSEVKAAVTGNGRADKAQVTEM 134
Query: 130 LKMLMPES-FFKGKDAADALAIAVCHAYHA 158
+ ++ DAADALA+A+CH + A
Sbjct: 135 VTRILALQAKPTPADAADALALAICHCWRA 164
>gi|254391314|ref|ZP_05006518.1| crossover junction endodeoxyribonuclease ruvC [Streptomyces
clavuligerus ATCC 27064]
gi|197705005|gb|EDY50817.1| crossover junction endodeoxyribonuclease ruvC [Streptomyces
clavuligerus ATCC 27064]
Length = 196
Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats.
Identities = 56/150 (37%), Positives = 78/150 (52%), Gaps = 2/150 (1%)
Query: 11 DPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAA 69
DPGL R G G+V+ G L + G + S LA RL + +GL + +RPE A
Sbjct: 2 DPGLTRCGVGVVEGEAGRPLAMLGVGVVRSSPDADLAGRLVAIEQGLERWLDEYRPERVA 61
Query: 70 VEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMM 129
VE+VF + + QA A+A+L IPV + P+ +K AV G G DK Q+ M
Sbjct: 62 VERVFSQHNVRTVMGTAQASAVAMLCAGRRGIPVVLHTPSEVKAAVTGTGRADKAQVGAM 121
Query: 130 LKMLMPESFFK-GKDAADALAIAVCHAYHA 158
+ L+ DAADALA+A+CH + A
Sbjct: 122 VTRLLRLDAPPRPADAADALALAICHIWRA 151
>gi|318057103|ref|ZP_07975826.1| Holliday junction resolvase [Streptomyces sp. SA3_actG]
gi|318075776|ref|ZP_07983108.1| Holliday junction resolvase [Streptomyces sp. SA3_actF]
Length = 184
Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats.
Identities = 56/156 (35%), Positives = 85/156 (54%), Gaps = 2/156 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R++G+DPGL R G G+VD L V G + + L+ RL + G+ + +
Sbjct: 1 MRVLGVDPGLTRCGVGVVDGVPGRPLTMVGVGVVRTPADAELSRRLLAVEAGIEEWLDTH 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
RPE A+E+VF + + QA A+A+L A +PV+ + P+ +K AV G G DK
Sbjct: 61 RPEYVAIERVFSQHNVRTVMGTAQASAVAMLCAARRGLPVALHTPSEVKAAVTGSGRADK 120
Query: 124 KQIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHA 158
Q+ M+ L+ K DAADALA+A+CH + A
Sbjct: 121 AQVGAMVTRLLRLAEPPKPADAADALALAICHIWRA 156
>gi|149915609|ref|ZP_01904135.1| Holliday junction resolvase [Roseobacter sp. AzwK-3b]
gi|149810501|gb|EDM70344.1| Holliday junction resolvase [Roseobacter sp. AzwK-3b]
Length = 161
Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats.
Identities = 81/152 (53%), Positives = 103/152 (67%), Gaps = 1/152 (0%)
Query: 8 IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEE 67
+GIDPGLR GWG++DV G L V++G I +A RL L+ LT++ + + P+
Sbjct: 1 MGIDPGLRNLGWGVIDVDGSRLSHVANG-ICKSSGTDMAARLMSLHVQLTEIFRQFAPQT 59
Query: 68 AAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIH 127
AAVEQ FVNKD TLKLGQAR IA+L PA + V EYAPNT+KK V+GVGH K QI
Sbjct: 60 AAVEQTFVNKDGAGTLKLGQARGIALLVPAQFGLAVGEYAPNTVKKTVVGVGHATKDQIA 119
Query: 128 MMLKMLMPESFFKGKDAADALAIAVCHAYHAN 159
M+++ +P G DAADALAIA+CHA+HA
Sbjct: 120 HMVRVQLPGITLAGADAADALAIAICHAHHAR 151
>gi|33240597|ref|NP_875539.1| Holliday junction resolvasome endonuclease subunit [Prochlorococcus
marinus subsp. marinus str. CCMP1375]
gi|44888419|sp|Q7VBE8|RUVC_PROMA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|33238125|gb|AAQ00192.1| Holliday junction resolvasome endonuclease subunit [Prochlorococcus
marinus subsp. marinus str. CCMP1375]
Length = 155
Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats.
Identities = 42/139 (30%), Positives = 72/139 (51%), Gaps = 2/139 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+ I+GIDPGL R G+G+++V + + G I + Q R+ ++ + L +I+ W
Sbjct: 1 MVILGIDPGLARVGYGLIEVNNQRQVKMLDCGIIKTNKNQYEGERMVEIAKDLRVLIRKW 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
+P AAVE+ F K T+ + QAR + I++ A ++P+ E+ P IK AV G GH K
Sbjct: 61 KPGLAAVEKFFFYKS-STTISVVQARGVLIMTLARFKVPIVEFPPMQIKLAVAGSGHAKK 119
Query: 124 KQIHMMLKMLMPESFFKGK 142
++ + +
Sbjct: 120 DEVLEAVMRELRLKVPPRP 138
>gi|297155807|gb|ADI05519.1| Holliday junction resolvase [Streptomyces bingchenggensis BCW-1]
Length = 177
Score = 121 bits (305), Expect = 2e-26, Method: Composition-based stats.
Identities = 57/156 (36%), Positives = 87/156 (55%), Gaps = 2/156 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R++G+DPGL R G G+VD L + G I + + RL ++ GL + ++
Sbjct: 1 MRVLGVDPGLTRCGVGVVDGVAGRPLRMIGVGVIRTPADAPIGDRLVEIERGLEEWLEAH 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
RPE AVE+VF + + QA A+A+L A +PV+ + P+ +K AV G G DK
Sbjct: 61 RPEVVAVERVFSQHNVQTVMGTAQASAVAMLCAARRGLPVALHTPSEVKAAVTGSGRADK 120
Query: 124 KQIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHA 158
Q+ M+ L+ + K DAADALA+A+CH + A
Sbjct: 121 AQVGSMVTRLLRLDAPPKPADAADALALAICHIWRA 156
>gi|294827719|ref|NP_710904.2| putative Holliday junction endodeoxyribonuclease protein
[Leptospira interrogans serovar Lai str. 56601]
gi|293385562|gb|AAN47922.2| putative holliday junction endodeoxyribonuclease protein
[Leptospira interrogans serovar Lai str. 56601]
Length = 171
Score = 121 bits (305), Expect = 2e-26, Method: Composition-based stats.
Identities = 47/149 (31%), Positives = 80/149 (53%), Gaps = 1/149 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RIIGIDPG R G+ +++ + ++ GT+ L L +GL ++++ +
Sbjct: 8 LRIIGIDPGSHRAGYAVLEKNASKIKILNYGTVEVPSGTPSPDNLLMLRKGLREILEEFN 67
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P A+VE++F K+ ++ ++R + +++ A I + E + IKK G G DKK
Sbjct: 68 PSIASVEEMFFAKNKKTASRVFESRGVLLVTLAEMNIRILEPTVSQIKKGTTGSGTADKK 127
Query: 125 QIHMMLKMLMPESFFKG-KDAADALAIAV 152
QIH LK+L+ KG D+ DA+A A
Sbjct: 128 QIHQALKLLLNVELLKGHDDSWDAIAAAY 156
>gi|82703834|ref|YP_413400.1| crossover junction endodeoxyribonuclease RuvC [Nitrosospira
multiformis ATCC 25196]
gi|82411899|gb|ABB76008.1| Holliday junction endonuclease RuvC [Nitrosospira multiformis ATCC
25196]
Length = 133
Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats.
Identities = 50/124 (40%), Positives = 74/124 (59%), Gaps = 1/124 (0%)
Query: 45 LAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVS 104
+ RL + + L +VI +P+ A+EQVFVN + +TL LGQAR AI + L + V+
Sbjct: 1 MPLRLKSIMDHLNEVIAEHKPDHVAIEQVFVNVNPKSTLMLGQARGAAICTAVLNNLSVA 60
Query: 105 EYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYK 164
EY IK+AV+G GH K+Q+ M++ L+ S DAADALA A+CHA+ G
Sbjct: 61 EYTALQIKQAVVGEGHARKEQVQEMVRRLLRLSGQPASDAADALACAICHAH-GGLGLGA 119
Query: 165 IASQ 168
+++
Sbjct: 120 LSTA 123
>gi|296117789|ref|ZP_06836372.1| crossover junction endodeoxyribonuclease RuvC [Corynebacterium
ammoniagenes DSM 20306]
gi|295969020|gb|EFG82262.1| crossover junction endodeoxyribonuclease RuvC [Corynebacterium
ammoniagenes DSM 20306]
Length = 180
Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats.
Identities = 39/132 (29%), Positives = 69/132 (52%), Gaps = 1/132 (0%)
Query: 8 IGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
+GIDPGL R G +V G + +S G + + LA RL +L + + + +++P+
Sbjct: 1 MGIDPGLTRCGLSVVQAGRGRAVIPISVGVARTPPEEDLAKRLLRLSTAVEEWMDDYKPD 60
Query: 67 EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
A+E++F + L + +L+ A IPV Y P+ +KKA+ G G DKKQ+
Sbjct: 61 VVAIERLFERGNVSTVLHTAHGVGVLMLAAAKRDIPVYMYTPSEVKKAISGNGRADKKQM 120
Query: 127 HMMLKMLMPESF 138
+M+ ++ +
Sbjct: 121 TVMITRILGLTE 132
>gi|326780472|ref|ZP_08239737.1| crossover junction endodeoxyribonuclease RuvC [Streptomyces cf.
griseus XylebKG-1]
gi|326660805|gb|EGE45651.1| crossover junction endodeoxyribonuclease RuvC [Streptomyces cf.
griseus XylebKG-1]
Length = 204
Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats.
Identities = 55/156 (35%), Positives = 82/156 (52%), Gaps = 2/156 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R++GIDPGL R G G+V+ L + G + + L RL + G+ +
Sbjct: 1 MRVLGIDPGLTRCGVGVVEGVAGRPLTMIGVGVVRTSSDADLGDRLVAVERGIEQWLDEH 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
P AVE+VF + + QA A+A+L A IPV+ + P+ +K AV G G DK
Sbjct: 61 SPGYVAVERVFAQHNVRTVMGTAQASAVAMLCAARRGIPVALHTPSEVKAAVTGSGRADK 120
Query: 124 KQIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHA 158
Q+ M+ L+ + K DAADALA+A+CH + A
Sbjct: 121 AQVGAMVTRLLRLDAPPKPADAADALALAICHIWRA 156
>gi|254413947|ref|ZP_05027715.1| hypothetical protein MC7420_4064 [Microcoleus chthonoplastes PCC
7420]
gi|196179083|gb|EDX74079.1| hypothetical protein MC7420_4064 [Microcoleus chthonoplastes PCC
7420]
Length = 164
Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats.
Identities = 41/153 (26%), Positives = 65/153 (42%), Gaps = 1/153 (0%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGD-NLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDV 59
M +GIDPGL GW I+ + +C + GTI + S RL +L E L +
Sbjct: 1 MNAEDTWLGIDPGLATVGWSILTTDSNGTVCLIDYGTIETEKTLSTPERLAELEEDLVTL 60
Query: 60 IKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVG 119
++ + P +AA+E F ++ A + QA I L + + KA +G G
Sbjct: 61 MEEFEPTKAALEMPFFSRQIKAAGGVLQAVGIINLVCYREAEIIPVLLHQSSWKAHLGDG 120
Query: 120 HGDKKQIHMMLKMLMPESFFKGKDAADALAIAV 152
K ++ +L L D+ DA+ I
Sbjct: 121 RASKGEVAEILSALFDLENLPVDDSVDAIGIGY 153
>gi|302561706|ref|ZP_07314048.1| crossover junction endodeoxyribonuclease RuvC [Streptomyces
griseoflavus Tu4000]
gi|302479324|gb|EFL42417.1| crossover junction endodeoxyribonuclease RuvC [Streptomyces
griseoflavus Tu4000]
Length = 191
Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats.
Identities = 57/156 (36%), Positives = 85/156 (54%), Gaps = 2/156 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R++G+DPGL R G G+V+ L + G + + L RL + +GL +
Sbjct: 1 MRVLGVDPGLTRCGVGVVEGVAGRPLTMLGVGVVRTPADADLGHRLVAVEQGLEQWLDEH 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
RPE AVE+VF + + QA A+AIL + IPV+ + P+ +K AV G G DK
Sbjct: 61 RPEYVAVERVFSQHNVRTVMGTAQASAVAILCASRRGIPVALHTPSEVKAAVTGSGRADK 120
Query: 124 KQIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHA 158
Q+ M+ L+ + K DAADALA+A+CH + A
Sbjct: 121 AQVGAMVTRLLRLDAPPKPADAADALALAICHIWRA 156
>gi|94984435|ref|YP_603799.1| crossover junction endodeoxyribonuclease RuvC [Deinococcus
geothermalis DSM 11300]
gi|122986717|sp|Q1J1K4|RUVC_DEIGD RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|94554716|gb|ABF44630.1| Crossover junction endodeoxyribonuclease RuvC [Deinococcus
geothermalis DSM 11300]
Length = 168
Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats.
Identities = 36/134 (26%), Positives = 68/134 (50%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ ++G+DPGL G G+V+ + + + + RL L+E + ++ +R
Sbjct: 1 MIVLGVDPGLANLGLGLVEGDVRKARHLYHVCLTTESAWLMPRRLQYLHEEVARLLAEYR 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ A+E + + A K+GQA + L+ A A +P+ Y P +K++++G G DK+
Sbjct: 61 PDAVAIEDQILRRQADVAFKVGQAFGVVQLACAQAGVPIHAYGPMQVKRSLVGTGRADKE 120
Query: 125 QIHMMLKMLMPESF 138
QI M+K +
Sbjct: 121 QIIYMVKATLGIRE 134
>gi|254430887|ref|ZP_05044590.1| crossover junction endodeoxyribonuclease RuvC [Cyanobium sp. PCC
7001]
gi|197625340|gb|EDY37899.1| crossover junction endodeoxyribonuclease RuvC [Cyanobium sp. PCC
7001]
Length = 160
Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats.
Identities = 39/144 (27%), Positives = 73/144 (50%), Gaps = 7/144 (4%)
Query: 5 IRIIGIDPGLRRTGWGIVDVA------GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTD 58
+RI+GIDPGL R G+G+++V + G + + +S R+ ++ L
Sbjct: 1 MRILGIDPGLARVGYGVIEVQEQPGATAQPQQLLDCGILRTDAGRSEGERMVEIAADLRV 60
Query: 59 VIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGV 118
+++ W+P+ A VE+ F + T+ + QAR + I++ A ++PV E P IK+A+ G
Sbjct: 61 LLRRWQPQLAVVEKFFFYRS-STTIAVVQARGVVIMTLARFQVPVMELPPMQIKQALTGN 119
Query: 119 GHGDKKQIHMMLKMLMPESFFKGK 142
GH +K ++ + +
Sbjct: 120 GHAEKAEVLEAVMRELALEAPPRP 143
>gi|227875449|ref|ZP_03993590.1| crossover junction endodeoxyribonuclease [Mobiluncus mulieris ATCC
35243]
gi|269977299|ref|ZP_06184272.1| crossover junction endodeoxyribonuclease RuvC [Mobiluncus mulieris
28-1]
gi|306818761|ref|ZP_07452483.1| crossover junction endoribonuclease subunit C [Mobiluncus mulieris
ATCC 35239]
gi|307700732|ref|ZP_07637757.1| crossover junction endodeoxyribonuclease RuvC [Mobiluncus mulieris
FB024-16]
gi|227844003|gb|EEJ54171.1| crossover junction endodeoxyribonuclease [Mobiluncus mulieris ATCC
35243]
gi|269934602|gb|EEZ91163.1| crossover junction endodeoxyribonuclease RuvC [Mobiluncus mulieris
28-1]
gi|304648447|gb|EFM45750.1| crossover junction endoribonuclease subunit C [Mobiluncus mulieris
ATCC 35239]
gi|307613727|gb|EFN92971.1| crossover junction endodeoxyribonuclease RuvC [Mobiluncus mulieris
FB024-16]
Length = 209
Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats.
Identities = 51/156 (32%), Positives = 82/156 (52%), Gaps = 2/156 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNL-CFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R++GIDPG+ R G G+VD+ + V I S + FRL ++ EG+ I +
Sbjct: 1 MRVLGIDPGITRCGVGVVDIDVSRVASLVYVAVIRSEPNLATQFRLLKISEGIAATITRF 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
PE A+E+ F ++ + QA +A+ A +PV+ + P+ +K AV G G K
Sbjct: 61 SPEIVALERPFAKENRQSVTTTMQAMGVAMAEAGRAGLPVALHTPSEVKAAVSGNGAATK 120
Query: 124 KQIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHA 158
Q+ M+ ++ K DAADALA+A+ HA+
Sbjct: 121 AQVEAMIARILRLDKPPKPADAADALAVAITHAWRG 156
>gi|86607987|ref|YP_476749.1| Holliday junction resolvase [Synechococcus sp. JA-2-3B'a(2-13)]
gi|123751722|sp|Q2JP15|RUVC_SYNJB RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|86556529|gb|ABD01486.1| crossover junction endodeoxyribonuclease RuvC [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 168
Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats.
Identities = 37/137 (27%), Positives = 68/137 (49%), Gaps = 1/137 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
RI+G+DPGL G+G + L V G I + + S+ RL L+E L+ +++ RP
Sbjct: 14 RILGLDPGLGTMGFGCILAGSAGLKPVDYGVISTPSQHSMPERLQTLHEDLSQLLRQLRP 73
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ +E++F K T+ + QAR + +L+ A + E+ P +K+++ G G DK+
Sbjct: 74 HQVGLEKLFFYK-MGNTIAIAQARGVILLTLAQHHLLPVEFTPAQVKQSLTGYGRADKQA 132
Query: 126 IHMMLKMLMPESFFKGK 142
+ + +
Sbjct: 133 VQAAVARELNLPSLPRP 149
>gi|290961820|ref|YP_003493002.1| crossover junction endodeoxyribonuclease [Streptomyces scabiei
87.22]
gi|260651346|emb|CBG74468.1| crossover junction endodeoxyribonuclease [Streptomyces scabiei
87.22]
Length = 176
Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats.
Identities = 56/156 (35%), Positives = 85/156 (54%), Gaps = 2/156 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R++G+DPGL R G G+V+ L + G + + L RL + +G+ +
Sbjct: 1 MRVLGVDPGLTRCGVGVVEGVAGRPLTMLGVGVVRTPPDAELGRRLVAIEQGIEQWLDEH 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
RPE AVE+VF + + QA A+A+L A IPV+ + P+ +K AV G G DK
Sbjct: 61 RPECVAVERVFSQHNVRTVMGTAQASAVAMLCAARRGIPVALHTPSEVKAAVTGSGRADK 120
Query: 124 KQIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHA 158
Q+ M+ L+ + K DAADALA+A+CH + A
Sbjct: 121 AQVGAMVTRLLRLDAPPKPADAADALALAICHIWRA 156
>gi|302550161|ref|ZP_07302503.1| crossover junction endodeoxyribonuclease RuvC [Streptomyces
viridochromogenes DSM 40736]
gi|302467779|gb|EFL30872.1| crossover junction endodeoxyribonuclease RuvC [Streptomyces
viridochromogenes DSM 40736]
Length = 176
Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats.
Identities = 57/156 (36%), Positives = 85/156 (54%), Gaps = 2/156 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R++G+DPGL R G G+V+ L + G + + L RL + +G+ +
Sbjct: 1 MRVLGVDPGLTRCGVGVVEGVAGRPLTMIGVGVVRTPADADLGHRLVAVEQGIEQWLDEH 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
RPE AVE+VF + + QA A+A+L A IPV+ + P+ +K AV G G DK
Sbjct: 61 RPEFVAVERVFSQHNVRTVMGTAQASAVAMLCAARRGIPVALHTPSEVKAAVTGSGRADK 120
Query: 124 KQIHMMLKMLMPES-FFKGKDAADALAIAVCHAYHA 158
Q+ M+ L+ S K DAADALA+A+CH + A
Sbjct: 121 AQVGAMVTRLLRLSAPPKPADAADALALAICHIWRA 156
>gi|262197093|ref|YP_003268302.1| crossover junction endodeoxyribonuclease RuvC [Haliangium ochraceum
DSM 14365]
gi|262080440|gb|ACY16409.1| crossover junction endodeoxyribonuclease RuvC [Haliangium ochraceum
DSM 14365]
Length = 168
Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats.
Identities = 45/139 (32%), Positives = 73/139 (52%), Gaps = 3/139 (2%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNL---CFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
+RI+G+DPG R G+G+++V +V G + + + RL ++ LTDV+
Sbjct: 1 MRILGVDPGSRMCGYGVIEVGAQGPGACAYVECGVLSATRGAPMEQRLGEIACWLTDVVT 60
Query: 62 NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
RP AVE VF +++ + L L QAR + +A +PV YAP +KK V G G
Sbjct: 61 ELRPLVVAVEDVFTHQNVRSALALAQARGTVLAVAGMAGLPVYSYAPAVVKKTVTGRGRA 120
Query: 122 DKKQIHMMLKMLMPESFFK 140
K+Q+ +M++ L+
Sbjct: 121 PKEQVALMVQALVGLRRVP 139
>gi|182439808|ref|YP_001827527.1| Holliday junction resolvase [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|238689024|sp|B1W3G2|RUVC_STRGG RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|178468324|dbj|BAG22844.1| putative Holliday junction nuclease [Streptomyces griseus subsp.
griseus NBRC 13350]
Length = 204
Score = 120 bits (302), Expect = 5e-26, Method: Composition-based stats.
Identities = 55/156 (35%), Positives = 82/156 (52%), Gaps = 2/156 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R++GIDPGL R G G+V+ L + G + + L RL + G+ +
Sbjct: 1 MRVLGIDPGLTRCGVGVVEGVAGRPLTMIGVGVVRTSSDAELGDRLVAVERGIEQWLDEH 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
P AVE+VF + + QA A+A+L A IPV+ + P+ +K AV G G DK
Sbjct: 61 SPGYVAVERVFAQHNVRTVMGTAQASAVAMLCAARRGIPVALHTPSEVKAAVTGSGRADK 120
Query: 124 KQIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHA 158
Q+ M+ L+ + K DAADALA+A+CH + A
Sbjct: 121 AQVGAMVTRLLRLDAPPKPADAADALALAICHIWRA 156
>gi|282864189|ref|ZP_06273245.1| crossover junction endodeoxyribonuclease RuvC [Streptomyces sp.
ACTE]
gi|282560676|gb|EFB66222.1| crossover junction endodeoxyribonuclease RuvC [Streptomyces sp.
ACTE]
Length = 177
Score = 120 bits (302), Expect = 5e-26, Method: Composition-based stats.
Identities = 57/168 (33%), Positives = 87/168 (51%), Gaps = 4/168 (2%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R++G+DPGL R G G+V+ L V G + + L RL + G+ +
Sbjct: 1 MRVLGVDPGLTRCGVGVVEGVAGRPLTMVGVGVVRTPSDAELGHRLVAVERGIEQWLDEH 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
RPE AVE+VF + + QA A+A+L A IPV+ + P+ +K AV G G DK
Sbjct: 61 RPEFVAVERVFSQHNVSTVMGTAQASAVAMLCAARRGIPVALHTPSEVKAAVTGSGRADK 120
Query: 124 KQIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYH--ANSGYYKIASQ 168
Q+ M+ L+ + K DAADALA+A+CH + A + + +
Sbjct: 121 AQVGAMVTRLLRLDAPPKPADAADALALAICHIWRAPAQNRLQRAVAA 168
>gi|113477103|ref|YP_723164.1| Holliday junction resolvase [Trichodesmium erythraeum IMS101]
gi|123351979|sp|Q10YI3|RUVC_TRIEI RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|110168151|gb|ABG52691.1| Holliday junction endonuclease RuvC [Trichodesmium erythraeum
IMS101]
Length = 163
Score = 120 bits (302), Expect = 6e-26, Method: Composition-based stats.
Identities = 45/147 (30%), Positives = 74/147 (50%), Gaps = 10/147 (6%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDN-------LCFVSSGTIVSCVRQSLAFRLCQLY 53
M K I+G+DPGL G+G++ ++ V G I + +Q + RL +Y
Sbjct: 1 MEKL--ILGLDPGLAVLGFGLIKCIYNSKTEKIDSTSLVDFGVIKTTKKQEMGQRLVTIY 58
Query: 54 EGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKK 113
E L ++ N++P+ AA E++F + T+ + QAR I IL+ A IP+ E+ P IK+
Sbjct: 59 EDLHTILNNFKPDLAATEKLFFYR-MGNTILVAQARGILILALAQNEIPLIEFTPAQIKQ 117
Query: 114 AVIGVGHGDKKQIHMMLKMLMPESFFK 140
AV G G+ DK + + +
Sbjct: 118 AVTGYGNADKYDVQQAVARELNLEEIP 144
>gi|294628364|ref|ZP_06706924.1| crossover junction endodeoxyribonuclease RuvC [Streptomyces sp.
e14]
gi|292831697|gb|EFF90046.1| crossover junction endodeoxyribonuclease RuvC [Streptomyces sp.
e14]
Length = 182
Score = 120 bits (302), Expect = 6e-26, Method: Composition-based stats.
Identities = 56/156 (35%), Positives = 85/156 (54%), Gaps = 2/156 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R++G+DPGL R G G+V+ L + G + + L RL + +G+ +
Sbjct: 1 MRVLGVDPGLTRCGVGVVEGVAGRPLTMIGVGVVRTPADADLGHRLVAVEQGIEQWLDEH 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
RPE AVE+VF + + QA A+AIL + +PV+ + P+ +K AV G G DK
Sbjct: 61 RPEFVAVERVFSQHNVRTVMGTAQASAVAILCASRRGLPVALHTPSEVKAAVTGSGRADK 120
Query: 124 KQIHMMLKMLMPES-FFKGKDAADALAIAVCHAYHA 158
Q+ M+ L+ S K DAADALA+A+CH + A
Sbjct: 121 AQVGAMVTRLLRLSAPPKPADAADALALAICHIWRA 156
>gi|300864594|ref|ZP_07109453.1| Crossover junction endodeoxyribonuclease ruvC [Oscillatoria sp. PCC
6506]
gi|300337418|emb|CBN54601.1| Crossover junction endodeoxyribonuclease ruvC [Oscillatoria sp. PCC
6506]
Length = 174
Score = 120 bits (302), Expect = 6e-26, Method: Composition-based stats.
Identities = 40/148 (27%), Positives = 71/148 (47%), Gaps = 11/148 (7%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVA--------GDNLCFVSSGTIVSCVRQSLAFRLCQL 52
M+K RI+G+DPGL G+G++D + + G I + Q + RL +
Sbjct: 1 MKK--RILGLDPGLAILGFGVIDCEIIAGKKDEDYRVSMIDFGVIKTPAGQEMGQRLRTI 58
Query: 53 YEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIK 112
Y+ L +I ++P+ A E++F K + + + QAR + +L A +P+ E+ P IK
Sbjct: 59 YDDLNAIIDQFKPDLAVAEKLFFYK-MGSAIVVAQARGVLMLVLAQQNVPLVEFTPAQIK 117
Query: 113 KAVIGVGHGDKKQIHMMLKMLMPESFFK 140
A+ G G+ DK + + +
Sbjct: 118 LALTGRGNADKYDVQDAVARELELDDIP 145
>gi|209526684|ref|ZP_03275208.1| crossover junction endodeoxyribonuclease RuvC [Arthrospira maxima
CS-328]
gi|209492920|gb|EDZ93251.1| crossover junction endodeoxyribonuclease RuvC [Arthrospira maxima
CS-328]
Length = 172
Score = 120 bits (301), Expect = 7e-26, Method: Composition-based stats.
Identities = 40/145 (27%), Positives = 70/145 (48%), Gaps = 8/145 (5%)
Query: 5 IRIIGIDPGLRRTGWGIVDVA-------GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLT 57
+RI+G+DPGL G+GI++ G + G I + Q L RL +Y L
Sbjct: 3 VRIMGLDPGLATLGFGIIECHTCEEARGGSLFSVMDFGAIQTEANQPLGDRLQTIYADLH 62
Query: 58 DVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIG 117
+++ W+P+ VE++F + T+ + QAR + +L A +P+ E+ P IK+A+ G
Sbjct: 63 TLLEQWQPDLVGVEKLFFYR-MGNTIAVAQARGVLLLVLAQRHLPIFEFTPAQIKQALTG 121
Query: 118 VGHGDKKQIHMMLKMLMPESFFKGK 142
G+ K Q+ + +
Sbjct: 122 YGNAKKYQVQEAVARELNLQAIPQP 146
>gi|297198359|ref|ZP_06915756.1| crossover junction endodeoxyribonuclease RuvC [Streptomyces sviceus
ATCC 29083]
gi|197714416|gb|EDY58450.1| crossover junction endodeoxyribonuclease RuvC [Streptomyces sviceus
ATCC 29083]
Length = 179
Score = 120 bits (301), Expect = 7e-26, Method: Composition-based stats.
Identities = 56/156 (35%), Positives = 85/156 (54%), Gaps = 2/156 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R++G+DPGL R G G+V+ L + G + + L RL + +G+ +
Sbjct: 1 MRVLGVDPGLTRCGVGVVEGVAGRPLTMLGVGVVRTPSDAELGQRLVAVEQGIEQWLDQH 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
RPE AVE+VF + + QA A+A+L A IPV+ + P+ +K AV G G DK
Sbjct: 61 RPEFVAVERVFSQHNVRTVMGTAQASAVAMLCAARRGIPVALHTPSEVKAAVTGSGRADK 120
Query: 124 KQIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHA 158
Q+ M+ L+ + K DAADALA+A+CH + A
Sbjct: 121 AQVGAMVTRLLRLDAPPKPADAADALALAICHIWRA 156
>gi|150005548|ref|YP_001300292.1| Holliday junction resolvase [Bacteroides vulgatus ATCC 8482]
gi|149933972|gb|ABR40670.1| crossover junction endodeoxyribonuclease RuvC [Bacteroides vulgatus
ATCC 8482]
Length = 155
Score = 120 bits (301), Expect = 8e-26, Method: Composition-based stats.
Identities = 41/131 (31%), Positives = 67/131 (51%), Gaps = 3/131 (2%)
Query: 32 VSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAI 91
++ G I +L +++E + +I+ + P+E A+E F K+ + LKLG+A+ +
Sbjct: 1 MTMGVIDLRKYGDHYLKLRRIFERVVGIIEAYLPDELAIEAPFFGKNVQSMLKLGRAQGV 60
Query: 92 AILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESF---FKGKDAADAL 148
A+ + IP++EYAP IK A+ G G K+Q+ MLK ++ DA D L
Sbjct: 61 AMAAALSRDIPITEYAPLKIKMAITGNGQASKEQVADMLKRMLHIPESDMLPFMDATDGL 120
Query: 149 AIAVCHAYHAN 159
A A CH
Sbjct: 121 AAAYCHYLQMG 131
>gi|238063869|ref|ZP_04608578.1| crossover junction endodeoxyribonuclease ruvC [Micromonospora sp.
ATCC 39149]
gi|237885680|gb|EEP74508.1| crossover junction endodeoxyribonuclease ruvC [Micromonospora sp.
ATCC 39149]
Length = 175
Score = 120 bits (301), Expect = 8e-26, Method: Composition-based stats.
Identities = 57/167 (34%), Positives = 88/167 (52%), Gaps = 2/167 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNL-CFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R++G+DPGL R G G+V+ ++ + + + L RL L LTD++
Sbjct: 1 MRVLGVDPGLTRCGVGVVEGVPGRPCTLLAYYVVYTDPGEDLPLRLLHLDRSLTDLVAEH 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
RP+ AVE+VF + + QA IA+L+ A A +PV Y P+ +K A+ G G DK
Sbjct: 61 RPDAVAVERVFSQHNVRTVMGTAQASGIAVLAGARAGLPVQTYTPSEVKAAITGSGQADK 120
Query: 124 KQIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHANSGYYKIASQD 169
Q+ M+ L+ K DAADALA+A+CH + + A+ D
Sbjct: 121 AQMTTMVTRLLRLPEPPKPADAADALALAICHVWRGGTRSKLAAAAD 167
>gi|283853682|ref|ZP_06370913.1| crossover junction endodeoxyribonuclease RuvC [Desulfovibrio sp.
FW1012B]
gi|283570923|gb|EFC18952.1| crossover junction endodeoxyribonuclease RuvC [Desulfovibrio sp.
FW1012B]
Length = 169
Score = 119 bits (300), Expect = 9e-26, Method: Composition-based stats.
Identities = 51/136 (37%), Positives = 79/136 (58%), Gaps = 2/136 (1%)
Query: 1 MRKS--IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTD 58
M S + ++G+DPG R TG+G+V L V++G + + RL +Y + +
Sbjct: 1 MESSQEMMVLGLDPGSRVTGYGVVRERSGVLELVAAGVVRTGSENDFPTRLGVIYTAVAE 60
Query: 59 VIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGV 118
+I P EAAVE VFV+K+A LKLGQAR A+ + A+A +PV Y P IKK+++G
Sbjct: 61 LIGRLAPIEAAVENVFVSKNAGTALKLGQARGAALAACAVAGLPVFSYEPTIIKKSLVGT 120
Query: 119 GHGDKKQIHMMLKMLM 134
G +K Q+ M+ ++
Sbjct: 121 GRAEKSQVAFMVGRVL 136
>gi|302533405|ref|ZP_07285747.1| crossover junction endodeoxyribonuclease RuvC [Streptomyces sp. C]
gi|302442300|gb|EFL14116.1| crossover junction endodeoxyribonuclease RuvC [Streptomyces sp. C]
Length = 179
Score = 119 bits (300), Expect = 9e-26, Method: Composition-based stats.
Identities = 56/156 (35%), Positives = 84/156 (53%), Gaps = 2/156 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R++G+DPGL R G G+V+ L + G + + L RL + G+ + +
Sbjct: 1 MRVLGVDPGLTRCGVGVVEGVAGRPLTMIGVGVVRTPADAELGQRLVAIEAGIEEWLDAH 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
RPE AVE+VF + + QA A+A+L A IPV+ + P+ +K AV G G DK
Sbjct: 61 RPEFVAVERVFSQHNVRTVMGTAQASAVAMLCAARRGIPVALHTPSEVKAAVTGSGRADK 120
Query: 124 KQIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHA 158
Q+ M+ L+ K DAADALA+A+CH + A
Sbjct: 121 AQVGAMVTRLLRLAEPPKPADAADALALAICHIWRA 156
>gi|75906340|ref|YP_320636.1| Holliday junction resolvase [Anabaena variabilis ATCC 29413]
gi|123758952|sp|Q3MGZ5|RUVC_ANAVT RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|75700065|gb|ABA19741.1| Holliday junction endonuclease RuvC [Anabaena variabilis ATCC
29413]
Length = 163
Score = 119 bits (300), Expect = 9e-26, Method: Composition-based stats.
Identities = 40/149 (26%), Positives = 73/149 (48%), Gaps = 10/149 (6%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIV-------DVAGDNLCFVSSGTIVSCVRQSLAFRLCQLY 53
M K RI+G+DPGL G+G + + + + G I + + RLC L+
Sbjct: 1 MEK--RILGLDPGLAILGFGAITCTPGLTQLQSTKVNILDFGVIKTSADIEIGQRLCTLF 58
Query: 54 EGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKK 113
+ L VI N +P+ A+E++F + +T+ + QAR + +L+ A +P E+ P +K
Sbjct: 59 DDLHTVIDNLQPDVVAIEKLFFYR-MSSTIVVAQARGVVMLALAQHHLPYVEFTPAQVKL 117
Query: 114 AVIGVGHGDKKQIHMMLKMLMPESFFKGK 142
A+ G G+ DK ++ + + +
Sbjct: 118 ALTGYGNADKSEVQEAVARELDLAEIPQP 146
>gi|172055297|ref|YP_001806624.1| putative RuvC-like Holliday junction resolvase [Cyanothece sp. ATCC
51142]
gi|171701578|gb|ACB54558.1| putative RuvC-like Holliday junction resolvase [Cyanothece sp. ATCC
51142]
Length = 216
Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats.
Identities = 31/149 (20%), Positives = 61/149 (40%), Gaps = 2/149 (1%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
R +GI P + GW +++ V G I + L +RL ++ L +++ ++
Sbjct: 60 RWLGIKPSISNLGWAVIEGEPTEEPNMVDFGLIETDSHDPLPYRLGEIETDLREILVEYQ 119
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P A+EQ F+ + +T KL Q + L + P T K + +++
Sbjct: 120 PNHIAIEQPFIKAEYPSTTKLLQVLGVVNLVAYRHGCLPTMIYPATWKSNL-DHPKAERE 178
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVC 153
+ +++ L DA+A+A
Sbjct: 179 DLSAIVEELFDLQSILLNQEVDAIAVAYT 207
>gi|86606552|ref|YP_475315.1| Holliday junction resolvase [Synechococcus sp. JA-3-3Ab]
gi|86555094|gb|ABD00052.1| crossover junction endodeoxyribonuclease RuvC [Synechococcus sp.
JA-3-3Ab]
Length = 193
Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats.
Identities = 37/137 (27%), Positives = 68/137 (49%), Gaps = 1/137 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
RI+G+DPGL G+G + L + G I + QS+ RL LYE L ++++ ++P
Sbjct: 39 RILGLDPGLGTVGFGCILAGAGGLRSLDYGVISTPGEQSIPERLQTLYEDLKELLRQFQP 98
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ +E++F K T+ + QAR + +L A + E+ P +K+++ G G DK+
Sbjct: 99 HQVGLEKLFFYK-MGNTIPIAQARGVILLVLAQYHLVPVEFTPAQVKQSLTGYGRADKQA 157
Query: 126 IHMMLKMLMPESFFKGK 142
+ + +
Sbjct: 158 VQAAVARELNLPSLPRP 174
>gi|320011891|gb|ADW06741.1| crossover junction endodeoxyribonuclease RuvC [Streptomyces
flavogriseus ATCC 33331]
Length = 177
Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats.
Identities = 56/156 (35%), Positives = 84/156 (53%), Gaps = 2/156 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R++G+DPGL R G G+V+ L V G + + L RL + G+ +
Sbjct: 1 MRVLGVDPGLTRCGVGVVEGVAGRPLTMVGVGVVRTPADAELGHRLVAIERGIEQWLDEH 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
RPE AVE+VF + + QA A+A+L + IPV+ + P+ +K AV G G DK
Sbjct: 61 RPEYVAVERVFAQHNVRTVMGTAQASAVAMLCASRRGIPVALHTPSEVKAAVTGSGRADK 120
Query: 124 KQIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHA 158
Q+ M+ L+ + K DAADALA+A+CH + A
Sbjct: 121 AQVGAMVTRLLRLDAPPKPADAADALALAICHIWRA 156
>gi|159037422|ref|YP_001536675.1| Holliday junction resolvase [Salinispora arenicola CNS-205]
gi|187611450|sp|A8LXW7|RUVC_SALAI RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|157916257|gb|ABV97684.1| crossover junction endodeoxyribonuclease RuvC [Salinispora
arenicola CNS-205]
Length = 175
Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats.
Identities = 56/159 (35%), Positives = 83/159 (52%), Gaps = 2/159 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNL-CFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R++GIDPGL R G G+V+ ++ + + L RL L LT ++
Sbjct: 1 MRVLGIDPGLTRCGVGVVEGVPGRPCTLIAYHVVRTDPDDELPLRLLHLDRSLTALVAEH 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
RP+ AVE+VF + + QA +A+L+ A A IPV Y P+ +K AV G G DK
Sbjct: 61 RPDGVAVERVFSQHNVRTVMGTAQASGVAVLAGARAGIPVQTYTPSEVKAAVTGSGQADK 120
Query: 124 KQIHMMLKMLMPESFFK-GKDAADALAIAVCHAYHANSG 161
Q+ M+ L+ S DAADALA+A+CH + +
Sbjct: 121 AQMTAMVTRLLRLSEPPRPADAADALALAICHVWRGGTR 159
>gi|239939965|ref|ZP_04691902.1| Holliday junction resolvase [Streptomyces roseosporus NRRL 15998]
gi|239986449|ref|ZP_04707113.1| Holliday junction resolvase [Streptomyces roseosporus NRRL 11379]
gi|291443396|ref|ZP_06582786.1| holliday junction resolvase [Streptomyces roseosporus NRRL 15998]
gi|291346343|gb|EFE73247.1| holliday junction resolvase [Streptomyces roseosporus NRRL 15998]
Length = 246
Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats.
Identities = 54/156 (34%), Positives = 83/156 (53%), Gaps = 2/156 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R++G+DPGL R G G+V+ L + G + + L RL + G+ + +
Sbjct: 1 MRVLGVDPGLTRCGVGVVEGVAGRPLTMLGVGVVRTSSDAELGDRLVAVERGIEAWLDEY 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
P AVE+VF + + QA AIA+L A IPV+ + P+ +K AV G G +K
Sbjct: 61 SPGCVAVERVFAQHNVRTVMGTAQASAIAMLCAARRGIPVALHTPSEVKAAVTGSGRAEK 120
Query: 124 KQIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHA 158
Q+ M+ L+ + K DAADALA+A+CH + A
Sbjct: 121 AQVGAMVTRLLRLDAPPKPADAADALALAICHIWRA 156
>gi|119512861|ref|ZP_01631927.1| Holliday junction resolvase [Nodularia spumigena CCY9414]
gi|119462489|gb|EAW43460.1| Holliday junction resolvase [Nodularia spumigena CCY9414]
Length = 163
Score = 119 bits (298), Expect = 1e-25, Method: Composition-based stats.
Identities = 42/147 (28%), Positives = 77/147 (52%), Gaps = 10/147 (6%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDN-------LCFVSSGTIVSCVRQSLAFRLCQLY 53
M K RI+G+DPGL G+G++ + + + V G I + + + RLC L+
Sbjct: 1 MEK--RILGLDPGLAILGFGLIACSQNQAKILDTSVSMVDFGVIQTSSKMEMGQRLCTLF 58
Query: 54 EGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKK 113
+ L VI +P+ AVE++F + +T+ + QAR + +L+ A ++P E+ P IK+
Sbjct: 59 DDLHTVISELQPDLVAVEKLFFYR-MSSTILVAQARGVLMLALAQHKLPYVEFTPAQIKQ 117
Query: 114 AVIGVGHGDKKQIHMMLKMLMPESFFK 140
A+ G G+ DK ++ + + +
Sbjct: 118 ALTGYGNADKSEVQDAVARELDLDYIP 144
>gi|332295725|ref|YP_004437648.1| Crossover junction endodeoxyribonuclease ruvC [Thermodesulfobium
narugense DSM 14796]
gi|332178828|gb|AEE14517.1| Crossover junction endodeoxyribonuclease ruvC [Thermodesulfobium
narugense DSM 14796]
Length = 158
Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 39/149 (26%), Positives = 75/149 (50%), Gaps = 3/149 (2%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ I+GIDPG+ G+ IV + + S G I S RLC+++E L+ +I +
Sbjct: 1 MIILGIDPGVADIGYAIVKKD-NKIKLESCGLIQVH-GCSQNQRLCRIFEELSFIIDKYN 58
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ ++E++F K+ + + + R + L + I EY P +K+ + G G +K
Sbjct: 59 PDACSIEKIFYFKNQKTVMDVSEGRGVIKLVLSRKNIQYREYTPKEVKRLISGNGLANKD 118
Query: 125 QIHMMLKMLMPES-FFKGKDAADALAIAV 152
Q+ ++ ++ + D DA+A+A+
Sbjct: 119 QVRRSVEYILGSNFNNLQDDVTDAIALAL 147
>gi|309812859|ref|ZP_07706592.1| crossover junction endodeoxyribonuclease RuvC [Dermacoccus sp.
Ellin185]
gi|308433181|gb|EFP57080.1| crossover junction endodeoxyribonuclease RuvC [Dermacoccus sp.
Ellin185]
Length = 213
Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 43/137 (31%), Positives = 69/137 (50%), Gaps = 1/137 (0%)
Query: 2 RKSIRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
R +R++ +DPGL R G G+V G L V+ G I + L RL +L L V
Sbjct: 32 RCDVRVLAVDPGLTRCGVGVVATGQGSTLQIVTVGVIRTSADLPLHERLHELRVELDAVF 91
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
+ +P+ AVE++F D + QA A+ +L+ A +P+ + P+ +K AV G G
Sbjct: 92 ERTQPDAVAVERMFARHDVSTIMGTAQASAVPMLAAAERGLPLGLHTPSEVKAAVTGNGR 151
Query: 121 GDKKQIHMMLKMLMPES 137
DK Q+ M+ ++
Sbjct: 152 ADKAQVTTMVTRILGLE 168
>gi|188996623|ref|YP_001930874.1| Crossover junction endodeoxyribonuclease [Sulfurihydrogenibium sp.
YO3AOP1]
gi|188931690|gb|ACD66320.1| Crossover junction endodeoxyribonuclease [Sulfurihydrogenibium sp.
YO3AOP1]
Length = 154
Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 43/154 (27%), Positives = 73/154 (47%), Gaps = 6/154 (3%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
RI+ IDP +TG+ I + D + G I + L +LY+ L + I +
Sbjct: 3 RILSIDPSSSKTGYVIAKLEKDEALSLDYGLIELKKEK---QPLKKLYQALEEKILKYTI 59
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
E+ +E F + +A +KLG+ R + +L I V E++P +K ++ G G K++
Sbjct: 60 EKIILETPFYSINAQTLIKLGEVRGVILLLAQNYNIKVEEFSPAEVKISITGYGRSGKEE 119
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHAN 159
+ M+ + + K D ADA A+ H Y N
Sbjct: 120 VLEMVNKIFNLN-IKDYDIADAF--AILHCYMLN 150
>gi|284054437|ref|ZP_06384647.1| Holliday junction resolvase [Arthrospira platensis str. Paraca]
Length = 175
Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 40/142 (28%), Positives = 69/142 (48%), Gaps = 7/142 (4%)
Query: 5 IRIIGIDPGLRRTGWGIVDVA------GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTD 58
+RI+G+DPGL G+GI++ G + G I + Q L RL +Y L
Sbjct: 9 VRIMGLDPGLATLGFGIIECQTGEAGGGSLFSVIDFGAIQTEAHQPLGDRLQTIYADLHT 68
Query: 59 VIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGV 118
+++ W+P+ VE++F + T+ + QAR + +L A +P+ E P IK+A+ G
Sbjct: 69 LLEQWQPDLVGVEKLFFYR-MGNTIAVAQARGVLVLVLAQRHLPIFELTPAQIKQALTGY 127
Query: 119 GHGDKKQIHMMLKMLMPESFFK 140
G+ K Q+ + +
Sbjct: 128 GNAKKYQVQEAVARELNLQAIP 149
>gi|148269488|ref|YP_001243948.1| Holliday junction resolvase [Thermotoga petrophila RKU-1]
gi|170288162|ref|YP_001738400.1| crossover junction endodeoxyribonuclease RuvC [Thermotoga sp. RQ2]
gi|281411794|ref|YP_003345873.1| crossover junction endodeoxyribonuclease RuvC [Thermotoga
naphthophila RKU-10]
gi|166233308|sp|A5IJJ9|RUVC_THEP1 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|238688812|sp|B1L8R9|RUVC_THESQ RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|147735032|gb|ABQ46372.1| Holliday junction endonuclease RuvC [Thermotoga petrophila RKU-1]
gi|170175665|gb|ACB08717.1| crossover junction endodeoxyribonuclease RuvC [Thermotoga sp. RQ2]
gi|281372897|gb|ADA66459.1| crossover junction endodeoxyribonuclease RuvC [Thermotoga
naphthophila RKU-10]
Length = 165
Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 48/138 (34%), Positives = 78/138 (56%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+G+DPG G GI++V+G+ + V GTI + RL ++YE V++ +
Sbjct: 1 MRILGVDPGYGIVGIGIIEVSGNRISHVFHGTIETPKDLPAEKRLKRIYEEFLKVLERFS 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+E A+E++F K+ + +G+AR + +L+ A IPV EYAPN +K ++ G G KK
Sbjct: 61 PDECAMEKLFFVKNVTTAIGVGEARGVLLLALAEKNIPVFEYAPNEVKVSLSGYGRASKK 120
Query: 125 QIHMMLKMLMPESFFKGK 142
QI +K + S
Sbjct: 121 QIQENIKRFLNLSEIPRP 138
>gi|223938503|ref|ZP_03630395.1| crossover junction endodeoxyribonuclease RuvC [bacterium Ellin514]
gi|223892765|gb|EEF59234.1| crossover junction endodeoxyribonuclease RuvC [bacterium Ellin514]
Length = 193
Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats.
Identities = 40/136 (29%), Positives = 70/136 (51%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
I+G+DP LR TG+GI+ +A + GTI + L ++ + L DVIK +P
Sbjct: 31 ILGVDPSLRGTGFGIIRLAKPYPQTLVHGTISCPATWEHSRCLVKIAQTLRDVIKQHQPT 90
Query: 67 EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
A+E +F ++ L +G+AR A+ + A + + E AP +K+A++G G K +
Sbjct: 91 VCAIEGLFFAQNLQTALIMGEARGAAMATIGEAGLEIFEIAPRKVKQAIVGYGAAQKMAV 150
Query: 127 HMMLKMLMPESFFKGK 142
M++ ++ S
Sbjct: 151 AKMVQRMLHLSELPEP 166
>gi|315503186|ref|YP_004082073.1| crossover junction endodeoxyribonuclease ruvc [Micromonospora sp.
L5]
gi|315409805|gb|ADU07922.1| crossover junction endodeoxyribonuclease RuvC [Micromonospora sp.
L5]
Length = 175
Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats.
Identities = 58/159 (36%), Positives = 87/159 (54%), Gaps = 2/159 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNL-CFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R++G+DPGL R G G+V+ V+ + + LA RL L LTD++
Sbjct: 1 MRVLGVDPGLTRCGVGVVEGVPGRPCTLVAYYVVYTDPEDDLALRLLHLDRSLTDLVAEH 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
RP+ AVE+VF + + QA +A+L+ A A +PV+ Y P+ +K AV G G DK
Sbjct: 61 RPDAVAVERVFSQHNVRTVMGTAQASGVAVLAGARAGLPVTTYTPSEVKAAVTGSGQADK 120
Query: 124 KQIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHANSG 161
KQ+ M+ L+ K DAADALA+A+CH + +
Sbjct: 121 KQMTTMVTRLLRLPEPPKPADAADALALAICHVWRGGTR 159
>gi|17229789|ref|NP_486337.1| Holliday junction resolvase [Nostoc sp. PCC 7120]
gi|3914945|sp|O52751|RUVC_ANASP RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|2896027|gb|AAC03106.1| holiday junction resolvase [Nostoc sp. PCC 7120]
gi|17131389|dbj|BAB73996.1| holliday junction resolvase [Nostoc sp. PCC 7120]
Length = 163
Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats.
Identities = 40/149 (26%), Positives = 72/149 (48%), Gaps = 10/149 (6%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIV-------DVAGDNLCFVSSGTIVSCVRQSLAFRLCQLY 53
M K RI+G+DPGL G+G + + + + G I + + RLC L+
Sbjct: 1 MEK--RILGLDPGLAILGFGAITCTPGLTQLQSTKVNVLDFGVIKTSADIEIGQRLCTLF 58
Query: 54 EGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKK 113
+ L VI +P+ A+E++F + +T+ + QAR + +L+ A +P E+ P IK
Sbjct: 59 DDLHTVIDQLQPDVVAIEKLFFYR-MSSTIVVAQARGVVMLALAQHHLPYVEFTPAQIKL 117
Query: 114 AVIGVGHGDKKQIHMMLKMLMPESFFKGK 142
A+ G G+ DK ++ + + +
Sbjct: 118 ALTGYGNADKSEVQEAVARELDLAEIPRP 146
>gi|291565685|dbj|BAI87957.1| crossover junction endodeoxyribonuclease RuvC [Arthrospira
platensis NIES-39]
Length = 169
Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats.
Identities = 40/142 (28%), Positives = 69/142 (48%), Gaps = 7/142 (4%)
Query: 5 IRIIGIDPGLRRTGWGIVDVA----GDN--LCFVSSGTIVSCVRQSLAFRLCQLYEGLTD 58
+RI+G+DPGL G+GI++ G + G I + Q L RL +Y L
Sbjct: 3 VRIMGLDPGLATLGFGIIECQTGEAGGRSLFSVIDFGAIQTEAHQPLGDRLQTIYADLHT 62
Query: 59 VIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGV 118
+++ W+P+ VE++F + T+ + QAR + +L A +P+ E P IK+A+ G
Sbjct: 63 LLEQWQPDLVGVEKLFFYR-MGNTIAVAQARGVLVLVLAQRHLPIFELTPAQIKQALTGY 121
Query: 119 GHGDKKQIHMMLKMLMPESFFK 140
G+ K Q+ + +
Sbjct: 122 GNAKKYQVQEAVARELNLQAIP 143
>gi|284991601|ref|YP_003410155.1| crossover junction endodeoxyribonuclease RuvC [Geodermatophilus
obscurus DSM 43160]
gi|284064846|gb|ADB75784.1| crossover junction endodeoxyribonuclease RuvC [Geodermatophilus
obscurus DSM 43160]
Length = 188
Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats.
Identities = 58/156 (37%), Positives = 89/156 (57%), Gaps = 2/156 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R++GIDPGL R GWG+VD G V G + + L RL +L+ +T +++
Sbjct: 1 MRVLGIDPGLTRCGWGVVDGRPGARPTAVGVGVVRTAAELDLELRLLELHTAVTALLREH 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
RP+ A+E+VF + QA +A L+ A A PV+ + P+ +K A+ G G DK
Sbjct: 61 RPDVVAIERVFTQNNKGTATGTAQAAGVAALAAAQADRPVAWHTPSEVKAAISGSGRADK 120
Query: 124 KQIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHA 158
+Q+ +M+ ++ S K DAADALA+AVCHA+
Sbjct: 121 EQVTLMVTRVLELASPPKPADAADALALAVCHAWRG 156
>gi|261337767|ref|ZP_05965651.1| crossover junction endodeoxyribonuclease RuvC [Bifidobacterium
gallicum DSM 20093]
gi|270277220|gb|EFA23074.1| crossover junction endodeoxyribonuclease RuvC [Bifidobacterium
gallicum DSM 20093]
Length = 194
Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats.
Identities = 38/137 (27%), Positives = 66/137 (48%), Gaps = 1/137 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+ I+G+DPGL R G G+++ L F+ + S RL +Y GL + +
Sbjct: 1 MIILGVDPGLTRCGVGVIEAGVNRRLSFMHVDVVRSDSHMPQDLRLLTVYNGLCAKLDEF 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
P+ ++E+VF + L QA +A+L A IPV+ + P+ K A+ G G +K
Sbjct: 61 IPDVVSIERVFAQDNRSTVLGTAQAAGLAMLGAAQRGIPVALHTPSESKLAITGNGRAEK 120
Query: 124 KQIHMMLKMLMPESFFK 140
Q+ M+ ++ +
Sbjct: 121 IQMERMVARILGLNQLP 137
>gi|320105197|ref|YP_004180788.1| Crossover junction endodeoxyribonuclease [Isosphaera pallida ATCC
43644]
gi|319752479|gb|ADV64239.1| Crossover junction endodeoxyribonuclease [Isosphaera pallida ATCC
43644]
Length = 221
Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats.
Identities = 50/171 (29%), Positives = 84/171 (49%), Gaps = 21/171 (12%)
Query: 6 RIIGIDPGLRRTGWGIVD----VAGDN------------LCFVSSGTIVSCVR---QSLA 46
R++GIDPGL TG+ +++ V V +G I S +SLA
Sbjct: 42 RVVGIDPGLGVTGYAVLEPGQVVDRSRVGLNGQPYCRPGPVVVEAGVIRSSRGGVGKSLA 101
Query: 47 FRLCQLYEGLTDVIKNWRPEEAAVEQVFVN-KDAVATLKLGQARAIAILSPALARIPVSE 105
RL L+ G+ DV+ ++ P+ A+EQV + + + + AR + +L+ L +PV
Sbjct: 102 ARLAALHAGILDVLDSYPPQALALEQVHSHPRHPRTAILMAHARGVIVLAAQLRGVPVVG 161
Query: 106 YAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESFFK-GKDAADALAIAVCHA 155
Y+ + IKK + G G K+Q+ +++ + D ADA A+A+CH
Sbjct: 162 YSASRIKKTLTGSGRAPKEQMQHAVRIELGLVRPPEPHDVADACAVALCHY 212
>gi|296270038|ref|YP_003652670.1| crossover junction endodeoxyribonuclease RuvC [Thermobispora
bispora DSM 43833]
gi|296092825|gb|ADG88777.1| crossover junction endodeoxyribonuclease RuvC [Thermobispora
bispora DSM 43833]
Length = 193
Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats.
Identities = 54/162 (33%), Positives = 84/162 (51%), Gaps = 3/162 (1%)
Query: 1 MRKSI-RIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTD 58
MR R++G+DPGL R G G V+ G L V++G + + + RL + +
Sbjct: 1 MRSPEARVLGVDPGLTRCGLGAVEGRPGAPLRLVAAGVVRTSADDDIGTRLLAIEREIER 60
Query: 59 VIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGV 118
+ RP AVE+VF + + QA AIAI+ A +PV+ + P+ +K A+ G
Sbjct: 61 WLDEVRPSTVAVERVFAQHNVRTVMGTAQAAAIAIVCAARRGLPVALHTPSEVKAAITGN 120
Query: 119 GHGDKKQIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHAN 159
G K+Q+ M+ L+ + K DAADALA+A+CH +
Sbjct: 121 GDAGKRQVGAMVTRLLRLDAMPKPADAADALALAICHVWRGG 162
>gi|87308914|ref|ZP_01091052.1| crossover junction endodeoxyribonuclease ruvC [Blastopirellula
marina DSM 3645]
gi|87288257|gb|EAQ80153.1| crossover junction endodeoxyribonuclease ruvC [Blastopirellula
marina DSM 3645]
Length = 147
Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats.
Identities = 40/140 (28%), Positives = 73/140 (52%), Gaps = 2/140 (1%)
Query: 22 VDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNK-DAV 80
++V + + +G + R SL R+ ++Y+G+ DVI +P+ A+EQ++ +
Sbjct: 2 IEVQNRRIRIIEAGVVRGKTRGSLPARVREIYDGVRDVITTLQPQTMAIEQLYSHYERPK 61
Query: 81 ATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESFFK 140
+ +G AR + L+ A +P+ Y+ IKK + G G K Q+ + ++ +
Sbjct: 62 TAIIMGHARGVLCLAAEQAGMPIHHYSATQIKKLLTGSGRAPKNQVQLSVQRELSLPEIP 121
Query: 141 -GKDAADALAIAVCHAYHAN 159
D ADALA+A+CH Y A+
Sbjct: 122 EPPDVADALAVALCHYYLAS 141
>gi|269126343|ref|YP_003299713.1| crossover junction endodeoxyribonuclease RuvC [Thermomonospora
curvata DSM 43183]
gi|268311301|gb|ACY97675.1| crossover junction endodeoxyribonuclease RuvC [Thermomonospora
curvata DSM 43183]
Length = 176
Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats.
Identities = 45/133 (33%), Positives = 69/133 (51%), Gaps = 1/133 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R++G+DPGL R G G+VD A L V I + +A RL + G+ ++
Sbjct: 1 MRVLGVDPGLTRCGVGVVDGAPGKPLHLVHVEVIRTSPDADIAERLLGIERGIEALLDEH 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
P+ AVE+VF + + QA AIAI++ A +PV+ + P+ K AV G G K
Sbjct: 61 APDAVAVERVFAQHNVSTVMGTAQAGAIAIVAAARRGLPVALHTPSEAKAAVTGNGSAGK 120
Query: 124 KQIHMMLKMLMPE 136
Q+ MM+ L+
Sbjct: 121 AQVTMMVTRLLRL 133
>gi|186685412|ref|YP_001868608.1| Holliday junction resolvase [Nostoc punctiforme PCC 73102]
gi|226698760|sp|B2J4H5|RUVC_NOSP7 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|186467864|gb|ACC83665.1| crossover junction endodeoxyribonuclease RuvC [Nostoc punctiforme
PCC 73102]
Length = 163
Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats.
Identities = 41/147 (27%), Positives = 73/147 (49%), Gaps = 10/147 (6%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIV-------DVAGDNLCFVSSGTIVSCVRQSLAFRLCQLY 53
M K RI+G+DPGL G+G++ V + + G I + + RLC L+
Sbjct: 1 MEK--RILGLDPGLATLGFGVITCTQIANKVPETTVNMLDFGVIKTSADVEMGLRLCTLF 58
Query: 54 EGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKK 113
+ L V++ ++P+ A+E++F + +T+ + QAR + IL R+P E+ P IK+
Sbjct: 59 DDLHTVMEEFQPDLVAIEKLFFYR-MSSTILVAQARGVLILVLGQRRLPYVEFTPAQIKQ 117
Query: 114 AVIGVGHGDKKQIHMMLKMLMPESFFK 140
A+ G G+ DK + + +
Sbjct: 118 ALTGYGNADKLDVQEAVARELDLDEIP 144
>gi|183601645|ref|ZP_02963015.1| Holliday junction resolvase [Bifidobacterium animalis subsp. lactis
HN019]
gi|219683821|ref|YP_002470204.1| Holliday junction resolvase [Bifidobacterium animalis subsp. lactis
AD011]
gi|241190857|ref|YP_002968251.1| Holliday junction resolvase [Bifidobacterium animalis subsp. lactis
Bl-04]
gi|241196263|ref|YP_002969818.1| Holliday junction resolvase [Bifidobacterium animalis subsp. lactis
DSM 10140]
gi|254767458|sp|B8DUE9|RUVC_BIFA0 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|183219251|gb|EDT89892.1| Holliday junction resolvase [Bifidobacterium animalis subsp. lactis
HN019]
gi|219621471|gb|ACL29628.1| crossover junction endodeoxyribonuclease RuvC [Bifidobacterium
animalis subsp. lactis AD011]
gi|240249249|gb|ACS46189.1| Holliday junction resolvase [Bifidobacterium animalis subsp. lactis
Bl-04]
gi|240250817|gb|ACS47756.1| Holliday junction resolvase [Bifidobacterium animalis subsp. lactis
DSM 10140]
gi|289178596|gb|ADC85842.1| RuvC [Bifidobacterium animalis subsp. lactis BB-12]
gi|295793846|gb|ADG33381.1| Holliday junction resolvase [Bifidobacterium animalis subsp. lactis
V9]
Length = 193
Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats.
Identities = 38/139 (27%), Positives = 71/139 (51%), Gaps = 1/139 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAG-DNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+ ++G+DPGL R G G+++ L F+ + S +S RL ++Y+GL + +
Sbjct: 1 MIVLGVDPGLTRCGVGVIEAGAYRRLSFIHVDVVRSDPHESQDLRLLKIYDGLCAKMDEF 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
P+ ++E+VF ++ L QA +A+L+ A IPV+ + P K A+ G G +K
Sbjct: 61 IPDTVSIERVFAQENRNTVLGTAQAAGMAMLAAAQRGIPVALHTPTESKMAITGNGKAEK 120
Query: 124 KQIHMMLKMLMPESFFKGK 142
Q+ M+ ++ +
Sbjct: 121 IQMERMVARILNLNALPTP 139
>gi|328881168|emb|CCA54407.1| Crossover junction endodeoxyribonuclease RuvC [Streptomyces
venezuelae ATCC 10712]
Length = 187
Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats.
Identities = 54/169 (31%), Positives = 90/169 (53%), Gaps = 4/169 (2%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R++G+DPGL R G G+V+ L + G + + + RL + G+ + + +
Sbjct: 1 MRVLGVDPGLTRCGVGVVEGVAGRPLSMLGVGVVRTAADDDIGLRLVGIERGIEEWLDRF 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
PE AVE+VF + + QA A+A+L + IPV+ + P+ +K AV G G DK
Sbjct: 61 SPELVAVERVFAQHNVRTVMGTAQASAVAMLCASRRGIPVALHTPSEVKAAVTGSGRADK 120
Query: 124 KQIHMMLKMLMPES-FFKGKDAADALAIAVCHAYH--ANSGYYKIASQD 169
Q+ M+ L+ S K DAADALA+A+CH + A + + +++
Sbjct: 121 AQVGAMVTRLLRLSAPPKPADAADALALAICHIWRAPAQNRLQQAVAEN 169
>gi|212715817|ref|ZP_03323945.1| hypothetical protein BIFCAT_00718 [Bifidobacterium catenulatum DSM
16992]
gi|212661184|gb|EEB21759.1| hypothetical protein BIFCAT_00718 [Bifidobacterium catenulatum DSM
16992]
Length = 193
Score = 118 bits (295), Expect = 4e-25, Method: Composition-based stats.
Identities = 40/137 (29%), Positives = 72/137 (52%), Gaps = 1/137 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAG-DNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+ I+G+DPGL R G G+++ L F+ + S + S RL +Y+GL + I+ +
Sbjct: 1 MIILGVDPGLTRCGVGVIEAGAYRRLSFIHVDVVRSDPKMSQDLRLLAIYDGLVEKIERF 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
P+ ++E+VF ++ L QA +A+L+ A IPV+ + P K A+ G G +K
Sbjct: 61 APDTVSIERVFAQENRNTVLGTAQAAGLAMLAAAQRGIPVALHTPTESKMAITGNGKAEK 120
Query: 124 KQIHMMLKMLMPESFFK 140
Q+ M+ ++ +
Sbjct: 121 IQMERMVSRILGLNTLP 137
>gi|297195495|ref|ZP_06912893.1| crossover junction endodeoxyribonuclease ruvC [Streptomyces
pristinaespiralis ATCC 25486]
gi|197722110|gb|EDY66018.1| crossover junction endodeoxyribonuclease ruvC [Streptomyces
pristinaespiralis ATCC 25486]
Length = 180
Score = 118 bits (295), Expect = 4e-25, Method: Composition-based stats.
Identities = 56/156 (35%), Positives = 85/156 (54%), Gaps = 2/156 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R++G+DPGL R G G+V+ L G + + L RL + +G+ + +
Sbjct: 1 MRVLGVDPGLTRCGVGVVEGVAGRPLTMRGVGVVRTPPDAELGARLVAVEQGIERWLDEY 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
RPE AVE+VF + + QA A+A+L A IPV+ + P+ +K AV G G DK
Sbjct: 61 RPEFVAVERVFSQHNVRTVMGTAQASAVAMLCAARRGIPVALHTPSEVKAAVTGSGRADK 120
Query: 124 KQIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHA 158
Q+ M+ L+ + K DAADALA+A+CH + A
Sbjct: 121 AQVGAMVTRLLRLDAPPKPADAADALALAICHIWRA 156
>gi|319947800|ref|ZP_08021994.1| Holliday junction resolvase [Dietzia cinnamea P4]
gi|319438524|gb|EFV93450.1| Holliday junction resolvase [Dietzia cinnamea P4]
Length = 219
Score = 118 bits (295), Expect = 4e-25, Method: Composition-based stats.
Identities = 36/139 (25%), Positives = 69/139 (49%), Gaps = 1/139 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R++G+DPGL R G +++ A G + + + + + L RL ++ + ++
Sbjct: 1 MRVMGVDPGLTRCGLALIETAPGRAVTALDVDVVRTTSDEPLERRLRAVHSVADEWMEIH 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
RP+ A+E+VF + QA + L+ A IPV+ + P+ +K A+ G G DK
Sbjct: 61 RPDVVAIERVFAQNQVSTAMGTAQAAGVVALAAAYREIPVAFHTPSEVKAAITGSGRADK 120
Query: 124 KQIHMMLKMLMPESFFKGK 142
KQ+ +M+ ++
Sbjct: 121 KQMTLMITRILGLQKPPSP 139
>gi|29833375|ref|NP_828009.1| Holliday junction resolvase [Streptomyces avermitilis MA-4680]
gi|44888447|sp|Q820F5|RUVC_STRAW RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|29610498|dbj|BAC74544.1| putative Holliday junction nuclease [Streptomyces avermitilis
MA-4680]
Length = 176
Score = 117 bits (294), Expect = 4e-25, Method: Composition-based stats.
Identities = 56/156 (35%), Positives = 85/156 (54%), Gaps = 2/156 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R++G+DPGL R G G+V+ L G + + L RL + +G+ + +
Sbjct: 1 MRVLGVDPGLTRCGVGVVEGVAGRPLTMRGVGVVRTPADAELGLRLVAIEQGIEQWLDEY 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
RPE AVE+VF + + QA A+A+L A IPV+ + P+ +K AV G G DK
Sbjct: 61 RPECVAVERVFSQHNVRTVMGTAQASAVAMLCAARRGIPVALHTPSEVKAAVTGSGRADK 120
Query: 124 KQIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHA 158
Q+ M+ L+ + K DAADALA+A+CH + A
Sbjct: 121 AQVGAMVTRLLRLDAPPKPADAADALALAICHIWRA 156
>gi|87124817|ref|ZP_01080665.1| Holliday junction resolvase RuvC [Synechococcus sp. RS9917]
gi|86167696|gb|EAQ68955.1| Holliday junction resolvase RuvC [Synechococcus sp. RS9917]
Length = 160
Score = 117 bits (294), Expect = 4e-25, Method: Composition-based stats.
Identities = 42/144 (29%), Positives = 77/144 (53%), Gaps = 7/144 (4%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDN------LCFVSSGTIVSCVRQSLAFRLCQLYEGLTD 58
+RI+G+DPGL R G+G+++V + + G I + +S R+ ++ L
Sbjct: 1 MRILGLDPGLARVGYGLIEVTAGSGVSAGTQRMLDCGMIRTDPGRSEGERMVEIAHDLRL 60
Query: 59 VIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGV 118
+I++W+P+ AAVE+ F + T+ + QAR + +++ A RIP E+ P IK+A+ G
Sbjct: 61 LIRSWKPDLAAVEKFFFYRS-STTIAVVQARGVLMMTLARFRIPAVEFPPMQIKQALTGH 119
Query: 119 GHGDKKQIHMMLKMLMPESFFKGK 142
GH +K ++ + + S
Sbjct: 120 GHAEKDEVLEAVMRELDLSEPPRP 143
>gi|330466910|ref|YP_004404653.1| crossover junction endodeoxyribonuclease ruvc [Verrucosispora maris
AB-18-032]
gi|328809881|gb|AEB44053.1| crossover junction endodeoxyribonuclease ruvc [Verrucosispora maris
AB-18-032]
Length = 175
Score = 117 bits (294), Expect = 4e-25, Method: Composition-based stats.
Identities = 58/159 (36%), Positives = 84/159 (52%), Gaps = 2/159 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNL-CFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R++G+DPGL R G G+V+ V+ I + L RL L LTD++
Sbjct: 1 MRVLGVDPGLTRCGVGVVEGVPGRPCTLVAYYVIYTDPADELPTRLLHLDRSLTDLVAEH 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
RP+ AVE+VF + + QA IA+L+ A A +PV Y P+ +K AV G G DK
Sbjct: 61 RPDSVAVERVFSQHNVRTVMGTAQASGIAVLAGARAGLPVQTYTPSEVKAAVTGSGQADK 120
Query: 124 KQIHMMLKMLMPESFFK-GKDAADALAIAVCHAYHANSG 161
Q+ M+ L+ S DAADALA+A+CH + +
Sbjct: 121 AQMTAMVTRLLRLSEPPRPADAADALALAICHVWRGGTR 159
>gi|224283113|ref|ZP_03646435.1| Holliday junction resolvase [Bifidobacterium bifidum NCIMB 41171]
gi|310287482|ref|YP_003938740.1| crossover junction endodeoxyribonuclease ruvC [Bifidobacterium
bifidum S17]
gi|313140263|ref|ZP_07802456.1| crossover junction endodeoxyribonuclease ruvC [Bifidobacterium
bifidum NCIMB 41171]
gi|309251418|gb|ADO53166.1| crossover junction endodeoxyribonuclease ruvC [Bifidobacterium
bifidum S17]
gi|313132773|gb|EFR50390.1| crossover junction endodeoxyribonuclease ruvC [Bifidobacterium
bifidum NCIMB 41171]
Length = 193
Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats.
Identities = 41/139 (29%), Positives = 68/139 (48%), Gaps = 1/139 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+ I+G+DPGL R G G+++ A L F+ + S S RL +Y GL + +
Sbjct: 1 MIILGVDPGLTRCGVGVIEAGANRRLSFIHVDVVRSDPHTSQDLRLLTIYNGLCSKMDRF 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
P+ ++E+VF + L QA +A+L+ A IPV+ + P K A+ G G +K
Sbjct: 61 IPDAVSIERVFAQSNRNTVLGTAQAAGMAMLAAAQRGIPVALHTPTEAKLAITGNGKAEK 120
Query: 124 KQIHMMLKMLMPESFFKGK 142
QI M+ ++ +
Sbjct: 121 IQIERMVAKVLGLNTLPQP 139
>gi|119487876|ref|ZP_01621373.1| Holliday junction resolvase [Lyngbya sp. PCC 8106]
gi|119455452|gb|EAW36590.1| Holliday junction resolvase [Lyngbya sp. PCC 8106]
Length = 168
Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats.
Identities = 42/146 (28%), Positives = 75/146 (51%), Gaps = 9/146 (6%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDN------LCFVSSGTIVSCVRQSLAFRLCQLYE 54
M++ RIIG DPGL G+G++ + + G I + Q + RLC +YE
Sbjct: 1 MQR--RIIGFDPGLATLGFGVIHCQNKRERGGYPVSLIDFGVIKTPAHQEMGKRLCTIYE 58
Query: 55 GLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKA 114
L +I+ ++P+ A E++F + T+ L QAR I +L A +IP+ E++P +K+A
Sbjct: 59 DLHTLIEQFKPDLAVAEKLFFYR-MGNTISLAQARGILMLVLAQEKIPLVEFSPPQVKQA 117
Query: 115 VIGVGHGDKKQIHMMLKMLMPESFFK 140
+ G G+ +K ++ + +
Sbjct: 118 LTGYGNANKVEVQNAVARELDLDKIP 143
>gi|117928552|ref|YP_873103.1| Holliday junction endonuclease RuvC [Acidothermus cellulolyticus
11B]
gi|187611410|sp|A0LUK7|RUVC_ACIC1 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|117649015|gb|ABK53117.1| Holliday junction endonuclease RuvC [Acidothermus cellulolyticus
11B]
Length = 178
Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats.
Identities = 44/134 (32%), Positives = 66/134 (49%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
MR R++G+DPGL R G G+VD V + + L RL L +GL +
Sbjct: 8 MRSIRRVMGVDPGLTRCGIGVVDGYPGLARLVGVDVLHTPADAELGDRLAALEDGLVQWL 67
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
P+ AVE+VF + + QA A+A+L A +PV + P+ +K AV G G
Sbjct: 68 DRAAPDVVAVERVFSQHNVRTVMGTAQAGAVALLVAARRGVPVVWHTPSEVKAAVTGQGR 127
Query: 121 GDKKQIHMMLKMLM 134
K Q+ M++ L+
Sbjct: 128 AGKDQVAFMVRRLL 141
>gi|22298680|ref|NP_681927.1| Holliday junction resolvase [Thermosynechococcus elongatus BP-1]
gi|34222864|sp|Q8DJT5|RUVC_THEEB RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|22294860|dbj|BAC08689.1| Holliday juction resolvase [Thermosynechococcus elongatus BP-1]
Length = 159
Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats.
Identities = 36/138 (26%), Positives = 65/138 (47%), Gaps = 1/138 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+G+DPGL G+G ++V D G I + RL LY L +I +
Sbjct: 1 MRILGLDPGLATLGYGCIEVYRDTCQVRDFGVITTSADLPTGDRLQSLYNDLHTLIPILQ 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ A+E++F + T+ + QAR + +L + P+ E P +K+A+ G G+ K
Sbjct: 61 PDLVALERLFFYR-MSHTIGVAQARGVILLVLSQRHCPLLELTPPQVKQALTGYGNATKI 119
Query: 125 QIHMMLKMLMPESFFKGK 142
++ ++ +
Sbjct: 120 EVQRAVQRELHLCTLPQP 137
>gi|119025821|ref|YP_909666.1| Holliday junction resolvase [Bifidobacterium adolescentis ATCC
15703]
gi|154487346|ref|ZP_02028753.1| hypothetical protein BIFADO_01196 [Bifidobacterium adolescentis
L2-32]
gi|166231581|sp|A1A1K1|RUVC_BIFAA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|118765405|dbj|BAF39584.1| crossover junction endodeoxyribonuclease ruvC [Bifidobacterium
adolescentis ATCC 15703]
gi|154083864|gb|EDN82909.1| hypothetical protein BIFADO_01196 [Bifidobacterium adolescentis
L2-32]
Length = 193
Score = 117 bits (293), Expect = 6e-25, Method: Composition-based stats.
Identities = 40/137 (29%), Positives = 71/137 (51%), Gaps = 1/137 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAG-DNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+ I+G+DPGL R G G+++ L F+ + S + S RL +Y GL + I+ +
Sbjct: 1 MIILGVDPGLTRCGVGVIEAGAYRRLSFIHVDVVRSDPKTSQDLRLLAIYNGLVEKIERF 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
P+ ++E+VF ++ L QA +A+L+ A IPV+ + P K A+ G G +K
Sbjct: 61 APDAVSIERVFAQENRNTVLGTAQAAGLAMLAAAQRGIPVALHTPTESKLAITGNGKAEK 120
Query: 124 KQIHMMLKMLMPESFFK 140
Q+ M+ ++ +
Sbjct: 121 IQMERMVARILGLNTLP 137
>gi|254411422|ref|ZP_05025199.1| crossover junction endodeoxyribonuclease RuvC [Microcoleus
chthonoplastes PCC 7420]
gi|196181923|gb|EDX76910.1| crossover junction endodeoxyribonuclease RuvC [Microcoleus
chthonoplastes PCC 7420]
Length = 171
Score = 117 bits (293), Expect = 7e-25, Method: Composition-based stats.
Identities = 41/154 (26%), Positives = 74/154 (48%), Gaps = 17/154 (11%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIV--------------DVAGDNLCFVSSGTIVSCVRQSLA 46
M K RI+G+DPGL G+G + +++ + G I + R L
Sbjct: 1 MGK--RILGLDPGLAILGFGAIICQAEVKPMTKVRGKSTSESVQLLDFGVIQTPARTELG 58
Query: 47 FRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEY 106
RLC +YE L +++ +P+ AVE++F + T+ + QAR + L A ++P+ E+
Sbjct: 59 KRLCTIYEDLHTILEQCQPDLVAVEKLFFYR-MGNTITVAQARGVVTLVLAQHQVPMVEF 117
Query: 107 APNTIKKAVIGVGHGDKKQIHMMLKMLMPESFFK 140
P +K+A+ G G+ DK ++ + +
Sbjct: 118 TPGQVKQALTGYGNADKHEVQQAVARELNLESIP 151
>gi|227495490|ref|ZP_03925806.1| crossover junction endodeoxyribonuclease [Actinomyces coleocanis
DSM 15436]
gi|226831037|gb|EEH63420.1| crossover junction endodeoxyribonuclease [Actinomyces coleocanis
DSM 15436]
Length = 210
Score = 117 bits (293), Expect = 7e-25, Method: Composition-based stats.
Identities = 39/133 (29%), Positives = 69/133 (51%), Gaps = 1/133 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAG-DNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R++GIDPG+ R G G+VDV V S + + FRL + + + VI +
Sbjct: 1 MRVLGIDPGITRCGIGVVDVDAMRRTTLVHVEVARSDQKIATHFRLKTIADAIDRVIAQF 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
+PE A+E+VF ++ + Q A++ A A +P++ + P+ +K AV G G +K
Sbjct: 61 QPEVVAIERVFAQENLQSVTTTMQVMGAAMVCAARAGLPLAIHTPSEVKAAVTGNGVANK 120
Query: 124 KQIHMMLKMLMPE 136
Q+ M+ ++
Sbjct: 121 SQVQAMVARVLGL 133
>gi|220906354|ref|YP_002481665.1| Holliday junction resolvase [Cyanothece sp. PCC 7425]
gi|254767468|sp|B8HX01|RUVC_CYAP4 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|219862965|gb|ACL43304.1| crossover junction endodeoxyribonuclease RuvC [Cyanothece sp. PCC
7425]
Length = 157
Score = 117 bits (293), Expect = 7e-25, Method: Composition-based stats.
Identities = 35/138 (25%), Positives = 74/138 (53%), Gaps = 2/138 (1%)
Query: 6 RIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
RI+G+DPGL G+G + V ++L + G I + + + RL +YE L ++++++
Sbjct: 4 RILGLDPGLATLGFGSITVQPDESLQVLDFGVIKTAAGEEIGSRLLTIYEDLHTLLQHFQ 63
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ A+E+ F + T+ + QAR + +L A + + E+ P +K+ + G G+ DK+
Sbjct: 64 PDLVAIEKFFFYR-MSNTILVAQARGVILLVLAQHHLALMEFTPAQVKQTLTGHGNADKQ 122
Query: 125 QIHMMLKMLMPESFFKGK 142
++ + ++ +
Sbjct: 123 EVQLAVQRELKLESLPRP 140
>gi|296390676|ref|ZP_06880151.1| Holliday junction resolvase [Pseudomonas aeruginosa PAb1]
Length = 134
Score = 116 bits (292), Expect = 7e-25, Method: Composition-based stats.
Identities = 45/116 (38%), Positives = 73/116 (62%)
Query: 45 LAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVS 104
+ RL ++ + +VI+ P ++EQVF+ ++A + LKLGQAR AI++ + V+
Sbjct: 1 MHERLHVVFRSVREVIRTHGPTALSIEQVFMARNADSALKLGQARGAAIVAAMEEGLSVA 60
Query: 105 EYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
EY + +K+AV+G G DK+Q+ MM+ L+ + DA+DALAIA+CHA+ S
Sbjct: 61 EYTASQVKQAVVGTGGADKQQVQMMVMHLLKLTQKPQIDASDALAIALCHAHTQQS 116
>gi|85375731|ref|YP_459793.1| Holliday junction resolvase [Erythrobacter litoralis HTCC2594]
gi|123409472|sp|Q2N5P5|RUVC_ERYLH RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|84788814|gb|ABC64996.1| Holliday junction resolvase [Erythrobacter litoralis HTCC2594]
Length = 163
Score = 116 bits (292), Expect = 7e-25, Method: Composition-based stats.
Identities = 50/130 (38%), Positives = 79/130 (60%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+G+DP L TGWG++ G + V++G + + + +A RL L+ + VI P
Sbjct: 3 IILGLDPSLSCTGWGVIRAEGSRIAHVANGQVKTDAKAPIADRLHHLHAAIAAVIAAHDP 62
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ AA E++F+NK+ +TLKL QAR + + A + V+E+A +KK+V+G G DK Q
Sbjct: 63 DRAAAEEIFINKNPQSTLKLAQARGCVLAACAAGGLAVNEHAARLVKKSVVGTGGADKAQ 122
Query: 126 IHMMLKMLMP 135
+ MLK+LMP
Sbjct: 123 VQAMLKVLMP 132
>gi|302866771|ref|YP_003835408.1| crossover junction endodeoxyribonuclease RuvC [Micromonospora
aurantiaca ATCC 27029]
gi|302569630|gb|ADL45832.1| crossover junction endodeoxyribonuclease RuvC [Micromonospora
aurantiaca ATCC 27029]
Length = 175
Score = 116 bits (292), Expect = 8e-25, Method: Composition-based stats.
Identities = 57/159 (35%), Positives = 86/159 (54%), Gaps = 2/159 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNL-CFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R++G+DPGL R G G+V+ V+ + + LA RL L LT ++
Sbjct: 1 MRVLGVDPGLTRCGVGVVEGVPGRPCTLVAYYVVYTDPEGDLALRLLHLDRSLTGLVAEH 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
RP+ AVE+VF + + QA +A+L+ A A +PV+ Y P+ +K AV G G DK
Sbjct: 61 RPDAVAVERVFSQHNVRTVMGTAQASGVAVLAGARAGLPVTTYTPSEVKAAVTGSGQADK 120
Query: 124 KQIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHANSG 161
KQ+ M+ L+ K DAADALA+A+CH + +
Sbjct: 121 KQMTTMVTRLLRLPEPPKPADAADALALAICHVWRGGTR 159
>gi|171742913|ref|ZP_02918720.1| hypothetical protein BIFDEN_02030 [Bifidobacterium dentium ATCC
27678]
gi|283456065|ref|YP_003360629.1| Crossover junction endodeoxyribonuclease ruvC [Bifidobacterium
dentium Bd1]
gi|306822724|ref|ZP_07456102.1| crossover junction endoribonuclease subunit C [Bifidobacterium
dentium ATCC 27679]
gi|309800829|ref|ZP_07694961.1| crossover junction endodeoxyribonuclease RuvC [Bifidobacterium
dentium JCVIHMP022]
gi|171278527|gb|EDT46188.1| hypothetical protein BIFDEN_02030 [Bifidobacterium dentium ATCC
27678]
gi|283102699|gb|ADB09805.1| Crossover junction endodeoxyribonuclease ruvC [Bifidobacterium
dentium Bd1]
gi|304554269|gb|EFM42178.1| crossover junction endoribonuclease subunit C [Bifidobacterium
dentium ATCC 27679]
gi|308222365|gb|EFO78645.1| crossover junction endodeoxyribonuclease RuvC [Bifidobacterium
dentium JCVIHMP022]
Length = 193
Score = 116 bits (292), Expect = 8e-25, Method: Composition-based stats.
Identities = 40/137 (29%), Positives = 71/137 (51%), Gaps = 1/137 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAG-DNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+ I+G+DPGL R G G+++ L F+ + S + S RL +Y GL + I+ +
Sbjct: 1 MIILGVDPGLTRCGVGVIEAGAYRRLSFIHVDVVRSDPKMSQDLRLLAIYNGLVEKIERF 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
P+ ++E+VF ++ L QA +A+L+ A IPV+ + P K A+ G G +K
Sbjct: 61 APDTVSIERVFAQENRNTVLGTAQAAGLAMLAAAQRGIPVALHTPTESKMAITGNGKAEK 120
Query: 124 KQIHMMLKMLMPESFFK 140
Q+ M+ ++ +
Sbjct: 121 IQMERMVARMLGLNTLP 137
>gi|37522869|ref|NP_926246.1| Holliday junction resolvase [Gloeobacter violaceus PCC 7421]
gi|44888386|sp|Q7NG73|RUVC_GLOVI RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|35213871|dbj|BAC91241.1| crossover junction endodeoxyribonuclease [Gloeobacter violaceus PCC
7421]
Length = 173
Score = 116 bits (292), Expect = 8e-25, Method: Composition-based stats.
Identities = 38/139 (27%), Positives = 70/139 (50%), Gaps = 3/139 (2%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFV-SSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+RI+G+DPG+ G+G++D V G + + + + RL +YE + +
Sbjct: 4 MRILGLDPGVAILGYGVLDFFDSAPPVVCDYGIVQTSAKTAFEARLAAIYEDINSLFSAH 63
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
+P+ A+E++F K T+ + QAR + +L A +P E++P +K A+ G G DK
Sbjct: 64 KPDLVAIEKLFFYK-MGNTISVAQARGVVLLCAAQHGVPYVEFSPPQVKLALTGDGRADK 122
Query: 124 KQIHMMLKM-LMPESFFKG 141
+ I ++ L + K
Sbjct: 123 RAIQEAVQRELGLITMPKP 141
>gi|289674669|ref|ZP_06495559.1| Holliday junction resolvase [Pseudomonas syringae pv. syringae FF5]
Length = 137
Score = 116 bits (292), Expect = 9e-25, Method: Composition-based stats.
Identities = 47/117 (40%), Positives = 74/117 (63%)
Query: 44 SLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPV 103
L RL +Y G+ +VIK + P +E+VF+ ++A + LKLGQAR AI++ A + +
Sbjct: 3 ELHERLQIVYRGVREVIKTYGPVTMGIEKVFMARNADSALKLGQARGAAIVAGAEEALEI 62
Query: 104 SEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
+EY +K+AV G G +K+Q+ MM+ L+ + DA+DALAIA+CHA+ +S
Sbjct: 63 AEYTATQVKQAVAGTGGANKEQVMMMVMHLLKLTQKPQIDASDALAIALCHAHTRSS 119
>gi|307326760|ref|ZP_07605952.1| crossover junction endodeoxyribonuclease RuvC [Streptomyces
violaceusniger Tu 4113]
gi|306887523|gb|EFN18517.1| crossover junction endodeoxyribonuclease RuvC [Streptomyces
violaceusniger Tu 4113]
Length = 201
Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats.
Identities = 54/156 (34%), Positives = 86/156 (55%), Gaps = 2/156 (1%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R++G+DPGL R G G+V+ L + G + + ++ RL + G+ + +
Sbjct: 1 MRVLGVDPGLTRCGVGVVEGVAGRPLRMLGVGVVRTGADLAIGDRLVLIERGIEEWLDAH 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
RPE AVE+VF + + QA A+A+L A +PV+ + P+ +K AV G G DK
Sbjct: 61 RPESVAVERVFSQHNVRTVMGTAQASAVAMLCAARRGLPVALHTPSEVKAAVTGSGRADK 120
Query: 124 KQIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYHA 158
Q+ M+ L+ + K DAADALA+A+CH + A
Sbjct: 121 AQVGSMVTRLLRLDAPPKPADAADALALAICHIWRA 156
>gi|238926805|ref|ZP_04658565.1| crossover junction endodeoxyribonuclease [Selenomonas flueggei ATCC
43531]
gi|238885337|gb|EEQ48975.1| crossover junction endodeoxyribonuclease [Selenomonas flueggei ATCC
43531]
Length = 126
Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats.
Identities = 36/123 (29%), Positives = 67/123 (54%), Gaps = 1/123 (0%)
Query: 43 QSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIP 102
+ RL ++Y L ++I+ + PE VEQ+F N++ + +GQAR + +L+ A +
Sbjct: 1 MPVEKRLLKIYTALDELIQKYHPEAMGVEQLFFNRNVTTAIPVGQARGVVLLAAAQNNLV 60
Query: 103 VSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESF-FKGKDAADALAIAVCHAYHANSG 161
+ E P +K++V G G K+Q+ M+ L+ D ADALA+A+ A+ ++
Sbjct: 61 LIERTPLQVKQSVTGYGKATKEQVIYMVTKLLHLPEAPHPDDTADALAVAISAAHCMDTI 120
Query: 162 YYK 164
++
Sbjct: 121 AWR 123
>gi|296454196|ref|YP_003661339.1| crossover junction endodeoxyribonuclease RuvC [Bifidobacterium
longum subsp. longum JDM301]
gi|312132688|ref|YP_004000027.1| ruvc [Bifidobacterium longum subsp. longum BBMN68]
gi|317483237|ref|ZP_07942232.1| crossover junction endodeoxyribonuclease RuvC [Bifidobacterium sp.
12_1_47BFAA]
gi|322689209|ref|YP_004208943.1| holliday junction resolvase [Bifidobacterium longum subsp. infantis
157F]
gi|322691275|ref|YP_004220845.1| holliday junction resolvase [Bifidobacterium longum subsp. longum
JCM 1217]
gi|296183627|gb|ADH00509.1| crossover junction endodeoxyribonuclease RuvC [Bifidobacterium
longum subsp. longum JDM301]
gi|311773646|gb|ADQ03134.1| RuvC [Bifidobacterium longum subsp. longum BBMN68]
gi|316915306|gb|EFV36733.1| crossover junction endodeoxyribonuclease RuvC [Bifidobacterium sp.
12_1_47BFAA]
gi|320456131|dbj|BAJ66753.1| holliday junction resolvase [Bifidobacterium longum subsp. longum
JCM 1217]
gi|320460545|dbj|BAJ71165.1| holliday junction resolvase [Bifidobacterium longum subsp. infantis
157F]
Length = 194
Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats.
Identities = 38/139 (27%), Positives = 68/139 (48%), Gaps = 1/139 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+ I+G+DPGL R G G+++ L F+ + S + RL +Y GL++ + +
Sbjct: 1 MIILGVDPGLTRCGVGVIEAGEHRRLSFIHVDVVRSSPDITQDLRLLAIYNGLSEKMDRF 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
P+ ++E+VF + L QA +A+L+ A IPV+ + P K A+ G G K
Sbjct: 61 APDAVSIERVFAQSNRNTVLGTAQAAGLAMLAAAQRNIPVALHTPTEAKLAITGNGQAQK 120
Query: 124 KQIHMMLKMLMPESFFKGK 142
Q+ M+ ++ +
Sbjct: 121 IQVERMVTRILNLTKMPTP 139
>gi|23335125|ref|ZP_00120363.1| COG0817: Holliday junction resolvasome, endonuclease subunit
[Bifidobacterium longum DJO10A]
gi|23465305|ref|NP_695908.1| Holliday junction resolvase [Bifidobacterium longum NCC2705]
gi|189439314|ref|YP_001954395.1| Holliday junction resolvase [Bifidobacterium longum DJO10A]
gi|227547259|ref|ZP_03977308.1| crossover junction endodeoxyribonuclease [Bifidobacterium longum
subsp. infantis ATCC 55813]
gi|239621473|ref|ZP_04664504.1| holliday junction resolvase [Bifidobacterium longum subsp. infantis
CCUG 52486]
gi|44888507|sp|Q8G6B9|RUVC_BIFLO RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|238692056|sp|B3DRX8|RUVC_BIFLD RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|23325943|gb|AAN24544.1| crossover junction endodeoxyribonuclease RuvC [Bifidobacterium
longum NCC2705]
gi|189427749|gb|ACD97897.1| Holliday junction resolvasome endonuclease subunit [Bifidobacterium
longum DJO10A]
gi|227212218|gb|EEI80114.1| crossover junction endodeoxyribonuclease [Bifidobacterium longum
subsp. infantis ATCC 55813]
gi|239515934|gb|EEQ55801.1| holliday junction resolvase [Bifidobacterium longum subsp. infantis
CCUG 52486]
Length = 194
Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats.
Identities = 38/139 (27%), Positives = 68/139 (48%), Gaps = 1/139 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+ I+G+DPGL R G G+++ L F+ + S + RL +Y GL++ + +
Sbjct: 1 MIILGVDPGLTRCGVGVIEAGEHRRLSFIHVDVVRSSPDITQDLRLLAIYNGLSEKMDRF 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
P+ ++E+VF + L QA +A+L+ A IPV+ + P K A+ G G K
Sbjct: 61 APDAVSIERVFAQSNRNTVLGTAQAAGLAMLAAAQRNIPVALHTPTEAKLAITGNGQAQK 120
Query: 124 KQIHMMLKMLMPESFFKGK 142
Q+ M+ ++ +
Sbjct: 121 IQVERMVTRILNLTKMPTP 139
>gi|288574887|ref|ZP_06393244.1| Crossover junction endodeoxyribonuclease [Dethiosulfovibrio
peptidovorans DSM 11002]
gi|288570628|gb|EFC92185.1| Crossover junction endodeoxyribonuclease [Dethiosulfovibrio
peptidovorans DSM 11002]
Length = 151
Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats.
Identities = 35/126 (27%), Positives = 59/126 (46%)
Query: 17 TGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVN 76
G+G+V+ G S G + + S+ RL +LY GL + I P AVE+++
Sbjct: 1 MGFGVVEKIGSKYRACSFGCLETPSDMSVPQRLDELYRGLREQINGCSPHFMAVEKLYFG 60
Query: 77 KDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPE 136
++ + QAR +A+L A + V E P+ K V G G +K QI M+++++
Sbjct: 61 RNTTTAENVWQARGVALLVGAQNDLFVLEPKPSEAKITVCGDGRAEKSQIQRMVQVILSL 120
Query: 137 SFFKGK 142
Sbjct: 121 KEIPRP 126
>gi|296122691|ref|YP_003630469.1| crossover junction endodeoxyribonuclease RuvC [Planctomyces
limnophilus DSM 3776]
gi|296015031|gb|ADG68270.1| crossover junction endodeoxyribonuclease RuvC [Planctomyces
limnophilus DSM 3776]
Length = 170
Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats.
Identities = 40/144 (27%), Positives = 68/144 (47%), Gaps = 6/144 (4%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ IIGIDPGL TG+ ++ G L +G I S SLA R+ ++ GL +V+ +++
Sbjct: 1 MFIIGIDPGLNTTGYAVLACHGRQLVLHEAGVIRSTKGCSLASRVTEIGRGLREVLADYQ 60
Query: 65 P-----EEAAVEQVFVNKD-AVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGV 118
A+EQVF + + + AR + + + A IP+ Y P IK + G
Sbjct: 61 SAGHELRAIAIEQVFSHTSFPKTAILMAHARGAILYAASEANIPIVHYMPRQIKSLLTGS 120
Query: 119 GHGDKKQIHMMLKMLMPESFFKGK 142
G K+Q+ +++ +
Sbjct: 121 GKASKEQVQRAVQLELKLPSILEP 144
>gi|15643341|ref|NP_228385.1| Holliday junction resolvase [Thermotoga maritima MSB8]
gi|6685947|sp|Q9WZ45|RUVC_THEMA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|4981092|gb|AAD35660.1|AE001732_5 crossover junction endodeoxyribonuclease [Thermotoga maritima MSB8]
Length = 168
Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats.
Identities = 49/139 (35%), Positives = 78/139 (56%)
Query: 4 SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
S+RI+G+DPG G GI++V+G+ + V GTI + RL ++YE V++ +
Sbjct: 3 SLRILGVDPGYGIVGIGIIEVSGNRISHVFHGTIETPKNLPAEKRLKRIYEEFLKVLERF 62
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
P+E A+E++F K+ + +G+AR + L+ A IPV EYAPN +K ++ G G K
Sbjct: 63 SPDECAMEKLFFVKNVTTAIGVGEARGVLFLALAEKNIPVFEYAPNEVKVSLSGYGRASK 122
Query: 124 KQIHMMLKMLMPESFFKGK 142
KQI +K + S
Sbjct: 123 KQIQENVKRFLNLSEIPRP 141
>gi|254383614|ref|ZP_04998964.1| crossover junction endodeoxyribonuclease ruvC [Streptomyces sp.
Mg1]
gi|194342509|gb|EDX23475.1| crossover junction endodeoxyribonuclease ruvC [Streptomyces sp.
Mg1]
Length = 176
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 44/133 (33%), Positives = 69/133 (51%), Gaps = 1/133 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R++G+DPGL R G G+V+ L + G + + L RL + G+ + +
Sbjct: 1 MRVLGVDPGLTRCGVGVVEGVAGRPLTMIGVGVVRTPADTELGNRLVAIERGIEEWLDEH 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
RPE AVE+VF + + QA A+A+L A IPV+ + P+ +K AV G G DK
Sbjct: 61 RPEVVAVERVFSQHNVSTVMGTAQASAVAMLCAARRGIPVALHTPSEVKAAVTGSGRADK 120
Query: 124 KQIHMMLKMLMPE 136
Q+ M+ L+
Sbjct: 121 AQVGAMVTRLLRL 133
>gi|229817633|ref|ZP_04447915.1| hypothetical protein BIFANG_02903 [Bifidobacterium angulatum DSM
20098]
gi|229785422|gb|EEP21536.1| hypothetical protein BIFANG_02903 [Bifidobacterium angulatum DSM
20098]
Length = 193
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 39/139 (28%), Positives = 67/139 (48%), Gaps = 1/139 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAG-DNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+ I+G+DPGL R G G+++ L F+ + S S RL +Y GL + + +
Sbjct: 1 MIILGVDPGLTRCGVGVIEAGAYRRLSFIHVDVVRSAPDVSQDLRLLAIYNGLVEKMDRF 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
P+ ++E+VF + L QA +A+L+ A IPV+ + P K A+ G G K
Sbjct: 61 VPDVVSIERVFAQSNHNTVLGTAQAAGLAMLAAAQRGIPVALHTPTEAKLAITGDGRAQK 120
Query: 124 KQIHMMLKMLMPESFFKGK 142
Q+ M+ ++ +
Sbjct: 121 IQVERMVTRILNLNTMPTP 139
>gi|291456788|ref|ZP_06596178.1| crossover junction endodeoxyribonuclease RuvC [Bifidobacterium
breve DSM 20213]
gi|291382065|gb|EFE89583.1| crossover junction endodeoxyribonuclease RuvC [Bifidobacterium
breve DSM 20213]
Length = 194
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 38/139 (27%), Positives = 68/139 (48%), Gaps = 1/139 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+ I+G+DPGL R G G+++ L F+ + S + RL +Y GL++ + +
Sbjct: 1 MIILGVDPGLTRCGVGVIEAGEHRRLSFIHVDVVRSSPDITQDLRLLAIYNGLSEKMDRF 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
P+ ++E+VF + L QA +A+L+ A IPV+ + P K A+ G G K
Sbjct: 61 APDAVSIERVFAQSNRNTVLGTAQAAGLAMLAAAQRNIPVALHTPTEAKLAITGNGQAQK 120
Query: 124 KQIHMMLKMLMPESFFKGK 142
Q+ M+ ++ +
Sbjct: 121 IQVERMVTRILNLTKMPTP 139
>gi|184201012|ref|YP_001855219.1| Holliday junction endonuclease RuvC [Kocuria rhizophila DC2201]
gi|183581242|dbj|BAG29713.1| Holliday junction endonuclease RuvC [Kocuria rhizophila DC2201]
Length = 222
Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats.
Identities = 50/167 (29%), Positives = 86/167 (51%), Gaps = 2/167 (1%)
Query: 4 SIRIIGIDPGLRRTGWGIVDVAGDNL-CFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
+ R++ +DPGL R G+ +VD++ FV S ++L R+ + E ++++
Sbjct: 9 TRRVLAVDPGLTRCGFAVVDMSAQRTGTFVHVQVSGSRAHEALERRVLTIMEAAEELMER 68
Query: 63 WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
+ P+ AVE+VF +A + QA + I + A IPV+ + P+ +K AV G G D
Sbjct: 69 FAPDVVAVERVFAQNNAPTVVGTAQATGVVIAAAARRGIPVAWHTPSEVKAAVTGDGSAD 128
Query: 123 KKQIHMMLKMLMPESFFK-GKDAADALAIAVCHAYHANSGYYKIASQ 168
K+ ++ M+ ++ DAADALA+AVCH + A+
Sbjct: 129 KESVNRMVVRILRLDAPPRPADAADALALAVCHGWRGGVAGMDAAAA 175
>gi|308177528|ref|YP_003916934.1| crossover junction endodeoxyribonuclease RuvC [Arthrobacter
arilaitensis Re117]
gi|307744991|emb|CBT75963.1| crossover junction endodeoxyribonuclease RuvC [Arthrobacter
arilaitensis Re117]
Length = 199
Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats.
Identities = 46/156 (29%), Positives = 79/156 (50%), Gaps = 2/156 (1%)
Query: 4 SIRIIGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
++R++G+DPGL R G +VDVA + + V + L RL ++ + + +
Sbjct: 2 ALRVVGVDPGLTRCGLAVVDVAANRQVSLVDVTVAGTPPGTPLDARLLKIADAIDAWLDL 61
Query: 63 WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
+P+ A+E+VF + + + Q + I + A IPV+ + P +K AV G G
Sbjct: 62 HKPDVLALERVFASANVSTVIGTAQVTGVVITAAARRGIPVAMHTPTEVKAAVTGSGQAT 121
Query: 123 KKQIHMML-KMLMPESFFKGKDAADALAIAVCHAYH 157
K I M+ K+ + K DAADA+A+A+ H +
Sbjct: 122 KVAIGKMVAKICRLDEPPKPADAADAVALAITHGWR 157
>gi|213692038|ref|YP_002322624.1| crossover junction endodeoxyribonuclease RuvC [Bifidobacterium
longum subsp. infantis ATCC 15697]
gi|254767459|sp|B7GR16|RUVC_BIFLI RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|213523499|gb|ACJ52246.1| crossover junction endodeoxyribonuclease RuvC [Bifidobacterium
longum subsp. infantis ATCC 15697]
gi|320458150|dbj|BAJ68771.1| holliday junction resolvase [Bifidobacterium longum subsp. infantis
ATCC 15697]
Length = 194
Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats.
Identities = 38/139 (27%), Positives = 68/139 (48%), Gaps = 1/139 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+ I+G+DPGL R G G+++ L F+ + S + RL +Y GL++ + +
Sbjct: 1 MIILGVDPGLTRCGVGVIEAGEHRRLSFIHVDVVRSSPDITQDLRLLAIYNGLSEKMDRF 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
P+ ++E+VF + L QA +A+L+ A IPV+ + P K A+ G G K
Sbjct: 61 APDAVSIERVFAQSNRNTVLGTAQAAGLAMLAAAQRGIPVALHTPTEAKLAITGNGQAQK 120
Query: 124 KQIHMMLKMLMPESFFKGK 142
Q+ M+ ++ +
Sbjct: 121 VQVERMVTRVLNLTKMPTP 139
>gi|257055536|ref|YP_003133368.1| Holliday junction resolvase [Saccharomonospora viridis DSM 43017]
gi|256585408|gb|ACU96541.1| Holliday junction endonuclease RuvC [Saccharomonospora viridis DSM
43017]
Length = 196
Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats.
Identities = 41/139 (29%), Positives = 71/139 (51%), Gaps = 1/139 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R++G+DPGL R G G+VD + V+ + + V +A RL ++ + + + + +
Sbjct: 1 MRVLGVDPGLTRCGLGVVDGGVGRSITGVAVDVVRTPVEAEVAQRLLRIGDAVEEWLDTY 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
RP+ AVE+VF + + QA + L A +PV+ + P+ +K AV G G DK
Sbjct: 61 RPDVVAVERVFSQHNVRTVMGTAQAGGVVALCAARRGLPVAFHTPSEVKAAVTGSGRADK 120
Query: 124 KQIHMMLKMLMPESFFKGK 142
Q+ M+ L+ S
Sbjct: 121 AQVTAMVTRLLGLSKKPSP 139
>gi|329938966|ref|ZP_08288340.1| Holliday junction resolvase [Streptomyces griseoaurantiacus M045]
gi|329301851|gb|EGG45744.1| Holliday junction resolvase [Streptomyces griseoaurantiacus M045]
Length = 186
Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats.
Identities = 58/168 (34%), Positives = 91/168 (54%), Gaps = 4/168 (2%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R++G+DPGL R G G+V+ L + G + + L RL + +G+ + +
Sbjct: 1 MRVLGVDPGLTRCGVGVVEGVPGRPLTMLGVGVVRTPADAELGHRLVAVEQGIEEWLDAH 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
RPE AVE+VF + + QA A+A+L A IPV+ + P+ +K AV G G DK
Sbjct: 61 RPEYVAVERVFSQHNVRTVMGTAQASAVAMLCAARRGIPVALHTPSEVKAAVTGSGRADK 120
Query: 124 KQIHMMLKMLMPE-SFFKGKDAADALAIAVCHAYH--ANSGYYKIASQ 168
Q+ M+ L+ + K DAADALA+A+CH + A + + A+Q
Sbjct: 121 AQVGAMVTRLLRLAAPPKPADAADALALAICHIWRAPAQNRLQRAAAQ 168
>gi|326382126|ref|ZP_08203818.1| Holliday junction resolvase [Gordonia neofelifaecis NRRL B-59395]
gi|326198856|gb|EGD56038.1| Holliday junction resolvase [Gordonia neofelifaecis NRRL B-59395]
Length = 193
Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats.
Identities = 49/153 (32%), Positives = 79/153 (51%), Gaps = 2/153 (1%)
Query: 8 IGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
+G+DPGL R G +V+ AG + + + + LA RL ++ G + P+
Sbjct: 1 MGVDPGLTRCGIALVESGAGRKVTALDVDVVRTPADMDLAERLLAIHVGAVHWLDTHGPD 60
Query: 67 EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
A+E+VF + + QA + L+ A IPV + P+ +K AV G G DK Q+
Sbjct: 61 VVAIERVFAQRQVSTAMGTAQAAGVIALAAAQREIPVRFHTPSEVKAAVTGSGRADKAQV 120
Query: 127 HMMLKMLMP-ESFFKGKDAADALAIAVCHAYHA 158
MM+ ++ ++ K DAADALA+A+CH +
Sbjct: 121 TMMVTRILGMQTPPKPADAADALALAICHCWRG 153
>gi|225352128|ref|ZP_03743151.1| hypothetical protein BIFPSEUDO_03743 [Bifidobacterium
pseudocatenulatum DSM 20438]
gi|225157375|gb|EEG70714.1| hypothetical protein BIFPSEUDO_03743 [Bifidobacterium
pseudocatenulatum DSM 20438]
Length = 194
Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats.
Identities = 41/138 (29%), Positives = 71/138 (51%), Gaps = 1/138 (0%)
Query: 4 SIRIIGIDPGLRRTGWGIVDVAG-DNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
I I+G+DPGL R G G+++ L F+ + S + S RL +Y GL + I+
Sbjct: 1 MIIILGVDPGLTRCGVGVIEAGAYRRLSFIHVDVVRSDPKMSQDLRLLAIYNGLVEKIER 60
Query: 63 WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
+ P+ ++E+VF ++ L QA +A+L+ A IPV+ + P K A+ G G +
Sbjct: 61 FAPDTVSIERVFAQENRNTVLGTAQAAGLAMLAAAQRGIPVALHTPTESKMAITGNGKAE 120
Query: 123 KKQIHMMLKMLMPESFFK 140
K Q+ M+ ++ +
Sbjct: 121 KIQMERMVARILGLNTLP 138
>gi|304436499|ref|ZP_07396473.1| crossover junction endoribonuclease subunit C [Selenomonas sp. oral
taxon 149 str. 67H29BP]
gi|304370545|gb|EFM24196.1| crossover junction endoribonuclease subunit C [Selenomonas sp. oral
taxon 149 str. 67H29BP]
Length = 126
Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats.
Identities = 35/123 (28%), Positives = 67/123 (54%), Gaps = 1/123 (0%)
Query: 43 QSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIP 102
+ RL +++ L ++I+ +RP+ VEQ+F N++ + +GQAR + +L+ A +
Sbjct: 1 MPVEQRLLKIHTVLDELIQKYRPDAMGVEQLFFNRNVTTAIPVGQARGVVLLAAAKNNLL 60
Query: 103 VSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESF-FKGKDAADALAIAVCHAYHANSG 161
+ E P +K++V G G K+Q+ M+ L+ D ADALA+A+ A+ ++
Sbjct: 61 LIERTPLQVKQSVTGYGKATKEQVIYMVTKLLHLPEAPHPDDTADALAVAISAAHCMDTI 120
Query: 162 YYK 164
+
Sbjct: 121 ALR 123
>gi|149923022|ref|ZP_01911440.1| crossover junction endodeoxyribonuclease RuvC [Plesiocystis
pacifica SIR-1]
gi|149816143|gb|EDM75653.1| crossover junction endodeoxyribonuclease RuvC [Plesiocystis
pacifica SIR-1]
Length = 190
Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats.
Identities = 53/169 (31%), Positives = 84/169 (49%), Gaps = 11/169 (6%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGD----------NLCFVSSGTIVSCVRQSLAFRLC 50
M + RI+GIDPG R G+ +V+V +V G + + R + RL
Sbjct: 1 MSCT-RILGIDPGTRVVGYALVEVPTRSKSSAGPGPARFDYVECGVLRARARDEMHVRLV 59
Query: 51 QLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNT 110
++ GL +++ ++P E A+E+ F +A + L L +AR L + V+EYAP
Sbjct: 60 EIASGLRELLAEFQPHELAIERAFHGLNAASALTLAEARGAFKLIALEHGLSVAEYAPAM 119
Query: 111 IKKAVIGVGHGDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHAN 159
IK+AV G G K ++ +++L + DAADALA A+CH
Sbjct: 120 IKRAVTGRGRATKAEVQARVQLLCRLAKEPQADAADALATAICHVQARR 168
>gi|311113690|ref|YP_003984912.1| crossover junction endoribonuclease subunit C [Rothia dentocariosa
ATCC 17931]
gi|310945184|gb|ADP41478.1| crossover junction endoribonuclease subunit C [Rothia dentocariosa
ATCC 17931]
Length = 221
Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats.
Identities = 33/136 (24%), Positives = 64/136 (47%), Gaps = 1/136 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
RI+G+DPGL R G ++D+ F++ G + + L R+ +++ + ++
Sbjct: 22 RIMGVDPGLTRCGLSMIDMTANRKASFINVGIAGTAAAEPLDERILRIFTVTQTWLDTYQ 81
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ A+E++F + + A I + A+ IPV + P+ +K AV G G DK
Sbjct: 82 PDALAIERIFAQEQVNTVIGTAHASGAVISAAAVRGIPVFFHTPSEVKAAVTGSGRADKA 141
Query: 125 QIHMMLKMLMPESFFK 140
+ M+ ++
Sbjct: 142 SVGRMVTKILGLEKIP 157
>gi|239932396|ref|ZP_04689349.1| Holliday junction resolvase [Streptomyces ghanaensis ATCC 14672]
Length = 176
Score = 113 bits (284), Expect = 6e-24, Method: Composition-based stats.
Identities = 45/133 (33%), Positives = 70/133 (52%), Gaps = 1/133 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R++G+DPGL R G G+V+ L + G + + L RL L +GL ++
Sbjct: 1 MRVLGVDPGLTRCGVGVVEGVAGRPLTMLGVGVVRTPAGADLGHRLVVLEQGLEQWLEEH 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
RPE AVE+VF + + QA A+A+L + IPV+ + P+ +K AV G G DK
Sbjct: 61 RPEYVAVERVFSQHNVRTVMGTAQASAVALLCASRRGIPVALHTPSEVKAAVTGSGRADK 120
Query: 124 KQIHMMLKMLMPE 136
Q+ M+ L+
Sbjct: 121 AQVGAMVTRLLRL 133
>gi|282897446|ref|ZP_06305448.1| Crossover junction endodeoxyribonuclease RuvC [Raphidiopsis brookii
D9]
gi|281198098|gb|EFA72992.1| Crossover junction endodeoxyribonuclease RuvC [Raphidiopsis brookii
D9]
Length = 192
Score = 113 bits (284), Expect = 8e-24, Method: Composition-based stats.
Identities = 35/149 (23%), Positives = 68/149 (45%), Gaps = 10/149 (6%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDN-------LCFVSSGTIVSCVRQSLAFRLCQLY 53
M + I+G+DPGL G+G + + + + V G I + + RL L+
Sbjct: 27 MTRQ--ILGLDPGLAIVGFGAISLEQRSAKLSDTTITMVDFGVIRTPSDMEITQRLSTLF 84
Query: 54 EGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKK 113
+ L ++ +P+ A+E++F + T+ + QAR + +L R+P E+AP IK+
Sbjct: 85 DDLHTLLDELQPDVVAIERLFFYR-MANTILVAQARGVIMLVLGQRRLPYLEFAPPQIKQ 143
Query: 114 AVIGVGHGDKKQIHMMLKMLMPESFFKGK 142
A+ G +K ++ + +
Sbjct: 144 ALTSYGKAEKIEVQEAVMRELDLEEIPQP 172
>gi|262165956|ref|ZP_06033693.1| crossover junction endodeoxyribonuclease RuvC [Vibrio mimicus
VM223]
gi|262025672|gb|EEY44340.1| crossover junction endodeoxyribonuclease RuvC [Vibrio mimicus
VM223]
Length = 122
Score = 113 bits (284), Expect = 8e-24, Method: Composition-based stats.
Identities = 46/113 (40%), Positives = 71/113 (62%), Gaps = 1/113 (0%)
Query: 56 LTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAV 115
++++I ++P+ A+EQVF+ K+A + LKLGQAR AI++ A +PV EYA IK+AV
Sbjct: 1 MSEIITQFQPDAFAIEQVFMAKNADSALKLGQARGSAIVAAVNANLPVYEYAARLIKQAV 60
Query: 116 IGVGHGDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
+G G DK Q+ M++ ++ DAADAL +A+CHA + +A Q
Sbjct: 61 VGTGAADKSQVQHMVQQMLKLPGKPQADAADALGVAICHANTNKT-LIALAGQ 112
>gi|298492708|ref|YP_003722885.1| crossover junction endodeoxyribonuclease RuvC ['Nostoc azollae'
0708]
gi|298234626|gb|ADI65762.1| crossover junction endodeoxyribonuclease RuvC ['Nostoc azollae'
0708]
Length = 163
Score = 113 bits (283), Expect = 8e-24, Method: Composition-based stats.
Identities = 36/147 (24%), Positives = 69/147 (46%), Gaps = 10/147 (6%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDN-------LCFVSSGTIVSCVRQSLAFRLCQLY 53
M K RI+G+DPGL G+G + + + G I + ++ RL L+
Sbjct: 1 MEK--RILGLDPGLAIIGFGAISWNQSQAKVQYTTVKMLDFGVIRTSADMEMSQRLSTLF 58
Query: 54 EGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKK 113
+ L ++ + +P+ A+E++F + T+ + QAR + +L ++P E+AP IK+
Sbjct: 59 DDLHTLMDDLQPDLVAIEKLFFYR-MANTIVVAQARGVLMLVLGQRKLPYVEFAPPQIKQ 117
Query: 114 AVIGVGHGDKKQIHMMLKMLMPESFFK 140
A+ G DK ++ + +
Sbjct: 118 ALTNYGKADKGEVQDAVMRELDLDEIP 144
>gi|170077253|ref|YP_001733891.1| Holliday juction resolvase [Synechococcus sp. PCC 7002]
gi|169884922|gb|ACA98635.1| Holliday juction resolvase [Synechococcus sp. PCC 7002]
Length = 160
Score = 113 bits (283), Expect = 9e-24, Method: Composition-based stats.
Identities = 35/143 (24%), Positives = 61/143 (42%), Gaps = 1/143 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNL-CFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
R +GIDPGL GW +++ G L + G I + S RL ++ + T+++ +
Sbjct: 3 RWLGIDPGLAIIGWAVLEEQGQTLPQILDYGIIETAKDLSTPQRLLEIEQDYTEILGEFH 62
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
PE A+E F ++ A + Q I L Y + K IG DK+
Sbjct: 63 PEAIAIEMPFFSRQIKAAGGVLQGLGILNLVSLRELNIEPIYLHQSSWKCHIGNAKADKR 122
Query: 125 QIHMMLKMLMPESFFKGKDAADA 147
++ +++ + D+ DA
Sbjct: 123 EVATLVQSIFGMETMPIDDSVDA 145
>gi|206895287|ref|YP_002247235.1| crossover junction endodeoxyribonuclease RuvC (Hollidayjunction
nuclease ruvC) (Holliday junction resolvase ruvC)
[Coprothermobacter proteolyticus DSM 5265]
gi|206737904|gb|ACI16982.1| crossover junction endodeoxyribonuclease RuvC (Hollidayjunction
nuclease ruvC) (Holliday junction resolvase ruvC)
[Coprothermobacter proteolyticus DSM 5265]
Length = 159
Score = 112 bits (281), Expect = 1e-23, Method: Composition-based stats.
Identities = 40/162 (24%), Positives = 67/162 (41%), Gaps = 10/162 (6%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ + G+DPG R G ++D N V + R + + + +
Sbjct: 1 MVVFGVDPGSTRVGLALLDDESRNWLHVQCLELT---GLPEHLRYTTIERYVGALCDVFN 57
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
PEE A+E++ K+ L++ + R + L I V EY P +K G GH +K
Sbjct: 58 PEEMAIEKLIWGKNRNNLLQISECRGVVKLVAYKRAIKVFEYFPTEVKSFTTGYGHEEK- 116
Query: 125 QIHMMLKMLMPESF----FKGKDAADALAIAVCHAYHANSGY 162
+++ L E+ DA+DA+AIA H N+
Sbjct: 117 --AGIVRTLQAETGFDLLPLFDDASDAMAIAWIHVLMRNNRA 156
>gi|56750749|ref|YP_171450.1| Holliday junction resolvase [Synechococcus elongatus PCC 6301]
gi|81299609|ref|YP_399817.1| Holliday junction resolvase [Synechococcus elongatus PCC 7942]
gi|81596412|sp|Q5N440|RUVC_SYNP6 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|123557188|sp|Q31Q39|RUVC_SYNE7 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|56685708|dbj|BAD78930.1| holliday junction resolvase RuvC [Synechococcus elongatus PCC 6301]
gi|81168490|gb|ABB56830.1| Holliday junction endonuclease RuvC [Synechococcus elongatus PCC
7942]
Length = 161
Score = 112 bits (281), Expect = 1e-23, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 67/140 (47%), Gaps = 4/140 (2%)
Query: 6 RIIGIDPGLRRTGWGIV---DVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
RI+G+DPGL G+G + D +L + G I + + RL +Y+ L +I
Sbjct: 4 RILGLDPGLAIVGFGALLCPDSRQGSLELLDFGVISTPAGAEIGDRLETIYQDLHQLIDL 63
Query: 63 WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
+P+ AVE++F + T+ + QAR + +L R+P E+ P +K+A+ G G+
Sbjct: 64 VQPDAVAVEKLFFYR-MGNTIAVAQARGVLMLVLRQRRLPYCEFTPAQVKQALTGYGNAP 122
Query: 123 KKQIHMMLKMLMPESFFKGK 142
K + ++ +
Sbjct: 123 KLAVQQAVQRELQLDAIPRP 142
>gi|282900755|ref|ZP_06308697.1| Crossover junction endodeoxyribonuclease RuvC [Cylindrospermopsis
raciborskii CS-505]
gi|281194555|gb|EFA69510.1| Crossover junction endodeoxyribonuclease RuvC [Cylindrospermopsis
raciborskii CS-505]
Length = 192
Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats.
Identities = 36/149 (24%), Positives = 69/149 (46%), Gaps = 10/149 (6%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDN-------LCFVSSGTIVSCVRQSLAFRLCQLY 53
M + I+G+DPGL G+G + + + + V G I + + RLC L+
Sbjct: 27 MTRQ--ILGLDPGLAIVGFGAISLEQRSAKLSDTTITMVDFGVIHTPSDMEITQRLCTLF 84
Query: 54 EGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKK 113
+ L ++ +P+ A+E++F + T+ + QAR + +L R+P E+AP IK+
Sbjct: 85 DDLHTLLDQLQPDVVAIERLFFYR-MANTILVAQARGVIMLVLGQRRLPYLEFAPPQIKQ 143
Query: 114 AVIGVGHGDKKQIHMMLKMLMPESFFKGK 142
A+ G +K ++ + +
Sbjct: 144 ALTSYGKAEKIEVQEAVMRELDLEEIPQP 172
>gi|311064397|ref|YP_003971122.1| crossover junction endodeoxyribonuclease RuvC [Bifidobacterium
bifidum PRL2010]
gi|310866716|gb|ADP36085.1| RuvC Crossover junction endodeoxyribonuclease [Bifidobacterium
bifidum PRL2010]
Length = 132
Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats.
Identities = 41/132 (31%), Positives = 65/132 (49%), Gaps = 1/132 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+ I+G+DPGL R G G+++ A L F+ + S S RL +Y GL + +
Sbjct: 1 MIILGVDPGLTRCGVGVIEAGANRRLSFIHVDVVRSDPHTSQDLRLLTIYNGLCSKMDRF 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
P+ ++E+VF + L QA +A+L+ A IPV+ + P K A+ G G +K
Sbjct: 61 IPDAVSIERVFAQSNRNTVLGTAQAAGMAMLAAAQRGIPVALHTPTEAKLAITGNGKAEK 120
Query: 124 KQIHMMLKMLMP 135
QI M+
Sbjct: 121 IQIERMVAKCWG 132
>gi|224370136|ref|YP_002604300.1| RuvC [Desulfobacterium autotrophicum HRM2]
gi|223692853|gb|ACN16136.1| RuvC [Desulfobacterium autotrophicum HRM2]
Length = 164
Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats.
Identities = 34/140 (24%), Positives = 67/140 (47%), Gaps = 1/140 (0%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M +++IG+DPGL TG G+++ G ++ S G+I + RL ++ + D +
Sbjct: 1 MSLMVKVIGLDPGLAGTGIGVIEGRGTDIADYSFGSISTHKDDPTHSRLNTIFTRVCDFL 60
Query: 61 KNWRPEEAAVEQVF-VNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVG 119
+P+ +E VF + K + + LG+ + +++ A V E + K+ V G G
Sbjct: 61 CQEKPDLVVIEDVFSLEKYPGSGIMLGKVSGVLLVAAFKAGARVEELSVREAKRVVTGSG 120
Query: 120 HGDKKQIHMMLKMLMPESFF 139
DK Q+ ++ ++
Sbjct: 121 SADKNQVEKSVRNILNHPHP 140
>gi|333028330|ref|ZP_08456394.1| putative holliday junction resolvase [Streptomyces sp. Tu6071]
gi|332748182|gb|EGJ78623.1| putative holliday junction resolvase [Streptomyces sp. Tu6071]
Length = 198
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 44/134 (32%), Positives = 71/134 (52%), Gaps = 1/134 (0%)
Query: 4 SIRIIGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
++R++G+DPGL R G G+VD L V G + + L+ RL + G+ + +
Sbjct: 14 AVRVLGVDPGLTRCGVGVVDGVPGRPLTMVGVGVVRTPADAELSRRLLAVEAGIEEWLDT 73
Query: 63 WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
RPE A+E+VF + + QA A+A+L A +PV+ + P+ +K AV G G D
Sbjct: 74 HRPEYVAIERVFSQHNVRTVMGTAQASAVAMLCAARRGLPVALHTPSEVKAAVTGSGRAD 133
Query: 123 KKQIHMMLKMLMPE 136
K Q+ M+ L+
Sbjct: 134 KAQVGAMVTRLLRL 147
>gi|107100422|ref|ZP_01364340.1| hypothetical protein PaerPA_01001447 [Pseudomonas aeruginosa PACS2]
gi|313105852|ref|ZP_07792115.1| Holliday junction resolvase RuvC [Pseudomonas aeruginosa 39016]
gi|310878617|gb|EFQ37211.1| Holliday junction resolvase RuvC [Pseudomonas aeruginosa 39016]
Length = 128
Score = 111 bits (279), Expect = 2e-23, Method: Composition-based stats.
Identities = 43/109 (39%), Positives = 70/109 (64%)
Query: 52 LYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTI 111
++ + +VI+ P ++EQVF+ ++A + LKLGQAR AI++ + V+EY + +
Sbjct: 2 VFRSVREVIRTHGPTALSIEQVFMARNADSALKLGQARGAAIVAAMEEGLSVAEYTASQV 61
Query: 112 KKAVIGVGHGDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
K+AV+G G DK+Q+ MM+ L+ + DA+DALAIA+CHA+ S
Sbjct: 62 KQAVVGTGGADKQQVQMMVMHLLKLTQKPQIDASDALAIALCHAHTQQS 110
>gi|91227615|ref|ZP_01261919.1| Holliday junction resolvase [Vibrio alginolyticus 12G01]
gi|91188508|gb|EAS74801.1| Holliday junction resolvase [Vibrio alginolyticus 12G01]
Length = 120
Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats.
Identities = 45/111 (40%), Positives = 69/111 (62%), Gaps = 1/111 (0%)
Query: 58 DVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIG 117
++I ++P+ A+EQVF+ K+A + LKLGQAR AI++ A +PV EYA IK+AV+G
Sbjct: 1 EIITQFQPDVFAIEQVFMAKNADSALKLGQARGSAIVAAVNAELPVFEYAARLIKQAVVG 60
Query: 118 VGHGDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
G DK Q+ M++ ++ DAADAL +A+CHA + +A +
Sbjct: 61 TGGADKAQVQHMVQQMLKLPAKPQADAADALGVAICHANTNKT-LVALAGK 110
>gi|255327195|ref|ZP_05368270.1| crossover junction endodeoxyribonuclease RuvC [Rothia mucilaginosa
ATCC 25296]
gi|255295813|gb|EET75155.1| crossover junction endodeoxyribonuclease RuvC [Rothia mucilaginosa
ATCC 25296]
Length = 229
Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats.
Identities = 36/138 (26%), Positives = 68/138 (49%), Gaps = 2/138 (1%)
Query: 6 RIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
RI+G+DPGL R G+ ++D+ FV+ G + +SL R+ ++ + + ++
Sbjct: 29 RIMGVDPGLTRCGFSMLDMTADRKAHFVNVGVAGTIPAESLDQRILWIFNAASHWLDTYK 88
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ A+E++F + + A I + A+ +PV + P+ +K AV G G DK
Sbjct: 89 PDALAIERIFAQEQVNTVIGTAHASGAVISAAAMRGVPVFFHTPSEVKAAVTGSGRADKA 148
Query: 125 QIHMMLKMLMPE-SFFKG 141
+ M+ ++ S K
Sbjct: 149 SVGRMVTRILGLDSMPKP 166
>gi|291440763|ref|ZP_06580153.1| holliday junction resolvase [Streptomyces ghanaensis ATCC 14672]
gi|291343658|gb|EFE70614.1| holliday junction resolvase [Streptomyces ghanaensis ATCC 14672]
Length = 188
Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats.
Identities = 45/135 (33%), Positives = 71/135 (52%), Gaps = 1/135 (0%)
Query: 3 KSIRIIGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
++R++G+DPGL R G G+V+ L + G + + L RL L +GL ++
Sbjct: 11 SAVRVLGVDPGLTRCGVGVVEGVAGRPLTMLGVGVVRTPAGADLGHRLVVLEQGLEQWLE 70
Query: 62 NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
RPE AVE+VF + + QA A+A+L + IPV+ + P+ +K AV G G
Sbjct: 71 EHRPEYVAVERVFSQHNVRTVMGTAQASAVALLCASRRGIPVALHTPSEVKAAVTGSGRA 130
Query: 122 DKKQIHMMLKMLMPE 136
DK Q+ M+ L+
Sbjct: 131 DKAQVGAMVTRLLRL 145
>gi|283457991|ref|YP_003362598.1| holliday junction resolvasome, endonuclease subunit [Rothia
mucilaginosa DY-18]
gi|283134013|dbj|BAI64778.1| holliday junction resolvasome, endonuclease subunit [Rothia
mucilaginosa DY-18]
Length = 228
Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats.
Identities = 35/138 (25%), Positives = 68/138 (49%), Gaps = 2/138 (1%)
Query: 6 RIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
RI+G+DPGL R G+ ++D+ FV+ G + ++L R+ ++ + + +R
Sbjct: 28 RIMGVDPGLTRCGFSMLDMTADRKAHFVNVGVAGTDPARTLDQRILWIFNAASHWLDTYR 87
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ A+E++F + + A I + A+ +PV + P+ +K AV G G DK
Sbjct: 88 PDALAIERIFAQEQVNTVIGTAHASGAVISAAAMRGVPVFFHTPSEVKAAVTGSGRADKA 147
Query: 125 QIHMMLKMLMPE-SFFKG 141
+ M+ ++ + K
Sbjct: 148 SVGRMVTRILGLNAMPKP 165
>gi|149197374|ref|ZP_01874425.1| crossover junction endodeoxyribonuclease RuvC [Lentisphaera
araneosa HTCC2155]
gi|149139392|gb|EDM27794.1| crossover junction endodeoxyribonuclease RuvC [Lentisphaera
araneosa HTCC2155]
Length = 151
Score = 110 bits (276), Expect = 6e-23, Method: Composition-based stats.
Identities = 38/131 (29%), Positives = 69/131 (52%), Gaps = 1/131 (0%)
Query: 25 AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLK 84
++ + G + + + S L +L+ +T +I+ ++P+ ++E F +K A +
Sbjct: 5 ENGSMNAIDCGVVKNKAKLSQLDCLKRLHVAITQLIELYKPDHISIEGTFYSKFAKTAMI 64
Query: 85 LGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMP-ESFFKGKD 143
LG AR + + A +PV EY+P K+A+ G G K+Q+ M+ ++ + D
Sbjct: 65 LGMARGSVLSALAGTDLPVWEYSPKRAKQAITGSGDASKEQVAFMIAGILQADVSQINDD 124
Query: 144 AADALAIAVCH 154
A DALA+AVCH
Sbjct: 125 ATDALALAVCH 135
>gi|222099064|ref|YP_002533632.1| Crossover junction endodeoxyribonuclease ruvC [Thermotoga
neapolitana DSM 4359]
gi|221571454|gb|ACM22266.1| Crossover junction endodeoxyribonuclease ruvC [Thermotoga
neapolitana DSM 4359]
Length = 170
Score = 110 bits (275), Expect = 8e-23, Method: Composition-based stats.
Identities = 41/138 (29%), Positives = 75/138 (54%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+G+DPG G GI++++G+ + V G I + RL Q++E +++ +
Sbjct: 6 LRILGVDPGYGIVGIGIIEISGNRISHVFHGAIETSKDLPRGKRLKQIHEEFLRILEKFS 65
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+E A+E +F K+ + +G+AR + +L+ +PV EYAPN +K ++ G G K+
Sbjct: 66 PDECAMETLFFVKNVTTAIGVGEARGVILLALEEKGVPVFEYAPNEVKISLTGYGRASKR 125
Query: 125 QIHMMLKMLMPESFFKGK 142
Q+ +K + S
Sbjct: 126 QVQENVKRFLGLSEIPRP 143
>gi|172034829|ref|YP_001798606.1| putative RuvC-like Holliday junction resolvase [Cyanothece sp. ATCC
51142]
gi|171701593|gb|ACB54572.1| putative RuvC-like Holliday junction resolvase [Cyanothece sp. ATCC
51142]
Length = 215
Score = 109 bits (274), Expect = 9e-23, Method: Composition-based stats.
Identities = 37/148 (25%), Positives = 66/148 (44%), Gaps = 2/148 (1%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
R +GI P + + GW I++ V G I + L RL ++ L ++IK+++
Sbjct: 59 RWLGIKPSISQLGWAILEGETTEDPQMVDFGLISTNSDDPLPCRLAEIEADLQEIIKDYQ 118
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P + A+E+ F+N + +T KL Q + L P T K + +++
Sbjct: 119 PTQIAIEKTFINPEFPSTAKLLQVLGVLNLVAYRHGCLPLMVNPATWKSNL-DNPKAERE 177
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAV 152
I +L+ + + K DA+AIA
Sbjct: 178 DIADILEQMFYLNPLKRDAQVDAIAIAY 205
>gi|163937883|ref|YP_001642769.1| crossover junction endodeoxyribonuclease RuvC [Bacillus
weihenstephanensis KBAB4]
gi|163865738|gb|ABY46794.1| crossover junction endodeoxyribonuclease RuvC [Bacillus
weihenstephanensis KBAB4]
Length = 166
Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats.
Identities = 39/159 (24%), Positives = 69/159 (43%), Gaps = 5/159 (3%)
Query: 4 SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
S R +G+D L G I+D+ L V I + +Q RL ++ L ++ +
Sbjct: 3 SRRFLGLDMSLASAGIAIIDIVDGELRIVHKQRIKTNPKQRHGERLHKIATELKSILIEY 62
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
+P + + + ++ A T L + ++ L + E +P TIK + G G DK
Sbjct: 63 QPFDTIIREQGFSRFAKTTQALFKVVGVSDLVL--RDYAIVEISPTTIKLVMTGDGKADK 120
Query: 124 KQIHMMLKMLMPES---FFKGKDAADALAIAVCHAYHAN 159
K++ ++ +M F D +DA AI + H N
Sbjct: 121 KEVEKAVRKIMRLDDDYIFISDDESDACAIILTHLIQNN 159
>gi|300741596|ref|ZP_07071617.1| crossover junction endodeoxyribonuclease RuvC [Rothia dentocariosa
M567]
gi|300380781|gb|EFJ77343.1| crossover junction endodeoxyribonuclease RuvC [Rothia dentocariosa
M567]
Length = 198
Score = 108 bits (269), Expect = 3e-22, Method: Composition-based stats.
Identities = 31/134 (23%), Positives = 62/134 (46%), Gaps = 1/134 (0%)
Query: 8 IGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
+G+DPGL R G ++D+ F++ G + + L R+ +++ + ++P+
Sbjct: 1 MGVDPGLTRCGLSMIDMTANRKASFINVGIAGTAAAEPLDERILRIFTVTQTWLDTYQPD 60
Query: 67 EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
A+E++F + + A I + A+ IPV + P+ +K AV G G DK +
Sbjct: 61 ALAIERIFAQEQVNTVIGTAHASGAVISAAAVRGIPVFFHTPSEVKAAVTGSGRADKASV 120
Query: 127 HMMLKMLMPESFFK 140
M+ ++
Sbjct: 121 GRMVTKILGLEKIP 134
>gi|295839915|ref|ZP_06826848.1| crossover junction endodeoxyribonuclease RuvC [Streptomyces sp.
SPB74]
gi|295827705|gb|EDY43677.2| crossover junction endodeoxyribonuclease RuvC [Streptomyces sp.
SPB74]
Length = 182
Score = 108 bits (269), Expect = 3e-22, Method: Composition-based stats.
Identities = 42/130 (32%), Positives = 67/130 (51%), Gaps = 1/130 (0%)
Query: 8 IGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
+G+DPGL R G G+V+ L V G + + L+ RL + G+ + + RPE
Sbjct: 2 LGVDPGLTRCGVGVVEGVPGRPLTMVGVGVVRTPADAELSRRLLAVEAGIEEWLDTHRPE 61
Query: 67 EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
A+E+VF + + QA A+A+L A +PV+ + P+ +K AV G G DK Q+
Sbjct: 62 YVAIERVFSQHNVRTVMGTAQASAVAMLCAARRGLPVALHTPSEVKAAVTGSGRADKAQV 121
Query: 127 HMMLKMLMPE 136
M+ L+
Sbjct: 122 GAMVTRLLRL 131
>gi|86740075|ref|YP_480475.1| Holliday junction resolvase [Frankia sp. CcI3]
gi|123737624|sp|Q2JD96|RUVC_FRASC RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|86566937|gb|ABD10746.1| Holliday junction endonuclease RuvC [Frankia sp. CcI3]
Length = 172
Score = 108 bits (269), Expect = 4e-22, Method: Composition-based stats.
Identities = 46/135 (34%), Positives = 70/135 (51%), Gaps = 1/135 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGD-NLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R++G+DPGL R G G+VD V G + + +A RLC + +G+ +
Sbjct: 1 MRVLGVDPGLTRCGLGVVDGGLGIRAHLVEVGVVRTPATAEVAERLCAVSDGIDAWLDRT 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
RPE AVE+VF + + QA A+AI+ A +PV Y P+ +K AV G G DK
Sbjct: 61 RPEAVAVEKVFSQANMRTVMGTAQAGAVAIVLAARRGLPVGLYTPSEVKAAVTGSGRADK 120
Query: 124 KQIHMMLKMLMPESF 138
Q+ M+ L+ +
Sbjct: 121 AQVSFMITRLLGLTE 135
>gi|302517992|ref|ZP_07270334.1| crossover junction endodeoxyribonuclease RuvC [Streptomyces sp.
SPB78]
gi|302426887|gb|EFK98702.1| crossover junction endodeoxyribonuclease RuvC [Streptomyces sp.
SPB78]
Length = 179
Score = 108 bits (269), Expect = 4e-22, Method: Composition-based stats.
Identities = 54/150 (36%), Positives = 79/150 (52%), Gaps = 2/150 (1%)
Query: 11 DPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAA 69
DPGL R G G+VD L V G + + L+ RL + G+ + + RPE A
Sbjct: 2 DPGLTRCGVGVVDGVPGRPLTMVGVGVVRTPADAELSRRLLAVEAGIEEWLDTHRPEYVA 61
Query: 70 VEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMM 129
+E+VF + + QA A+A+L A +PV+ + P+ +K AV G G DK Q+ M
Sbjct: 62 IERVFSQHNVRTVMGTAQASAVAMLCAARRGLPVALHTPSEVKAAVTGSGRADKAQVGAM 121
Query: 130 LKMLMPE-SFFKGKDAADALAIAVCHAYHA 158
+ L+ K DAADALA+A+CH + A
Sbjct: 122 VTRLLRLAEPPKPADAADALALAICHIWRA 151
>gi|329120925|ref|ZP_08249557.1| crossover junction endoribonuclease subunit C [Dialister
micraerophilus DSM 19965]
gi|327471384|gb|EGF16835.1| crossover junction endoribonuclease subunit C [Dialister
micraerophilus DSM 19965]
Length = 129
Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats.
Identities = 30/97 (30%), Positives = 57/97 (58%)
Query: 4 SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
++R +GIDPG R G+GIVD G+++ V G I + SL+ RL ++ G+ ++I+ +
Sbjct: 33 NMRALGIDPGTGRCGFGIVDKKGNSISAVDYGVIETTKEYSLSERLNIIFTGVNELIEIY 92
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALAR 100
+P+ +E ++ NK+ + + QAR + L+ +
Sbjct: 93 KPDVMGIETLYFNKNITTAISVAQARGVIQLAGFQKK 129
>gi|50842638|ref|YP_055865.1| Holliday junction resolvase [Propionibacterium acnes KPA171202]
gi|81611699|sp|Q6A8K9|RUVC_PROAC RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|50840240|gb|AAT82907.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
acnes KPA171202]
Length = 196
Score = 107 bits (267), Expect = 6e-22, Method: Composition-based stats.
Identities = 51/169 (30%), Positives = 85/169 (50%), Gaps = 12/169 (7%)
Query: 6 RIIGIDPGLRRTGWGIVDVAG------DNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDV 59
R++G+DPGL R V +L ++ G I + A RL ++++GL +
Sbjct: 14 RVMGVDPGLTRC-----GVGVVEGGLGSSLKLIAVGVIRTPADLDHAHRLLRIHDGLEEW 68
Query: 60 IKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVG 119
+ RP+ AVE+VF + QA IA++ A +PV+ + P+ +K A+ G G
Sbjct: 69 RDHTRPDAIAVEKVFAQHNRNTVAGTAQAAGIAMMIAARHGLPVALHTPSEVKAAISGSG 128
Query: 120 HGDKKQIHMMLKMLMPES-FFKGKDAADALAIAVCHAYHANSGYYKIAS 167
DK Q+ M+ ++ S K DAADA+A+A+CH + + A+
Sbjct: 129 RADKAQVGFMVARVLRLSAPPKPADAADAVALAICHLWRGGAARRIEAA 177
>gi|118594337|ref|ZP_01551684.1| Crossover junction endodeoxyribonuclease RuvC [Methylophilales
bacterium HTCC2181]
gi|118440115|gb|EAV46742.1| Crossover junction endodeoxyribonuclease RuvC [Methylophilales
bacterium HTCC2181]
Length = 118
Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats.
Identities = 44/111 (39%), Positives = 66/111 (59%), Gaps = 1/111 (0%)
Query: 59 VIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGV 118
+I + PE A+E+VFVN + +TL LGQAR AI + + +PV EY IKK+V+G
Sbjct: 1 MISQFNPECVAIEKVFVNTNPQSTLLLGQARGAAISAAVIHDLPVFEYTALQIKKSVVGQ 60
Query: 119 GHGDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIASQD 169
GH K+Q+ +M+K L+ D++DALA +CHA N+ K+ +
Sbjct: 61 GHAKKEQVQLMVKKLLGLPSVASTDSSDALACGLCHAN-INASIAKLGVSN 110
>gi|295130716|ref|YP_003581379.1| Crossover junction endodeoxyribonuclease RuvC [Propionibacterium
acnes SK137]
gi|291375442|gb|ADD99296.1| Crossover junction endodeoxyribonuclease RuvC [Propionibacterium
acnes SK137]
gi|332675561|gb|AEE72377.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
acnes 266]
Length = 196
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 50/169 (29%), Positives = 84/169 (49%), Gaps = 12/169 (7%)
Query: 6 RIIGIDPGLRRTGWGIVDVAG------DNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDV 59
R++G+DPGL R V L ++ G I + A RL ++++GL +
Sbjct: 14 RVMGVDPGLTRC-----GVGVVEGGLGSPLKLIAVGVIRTPADLDHAHRLLRIHDGLEEW 68
Query: 60 IKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVG 119
+ RP+ AVE+VF + QA +A++ A +PV+ + P+ +K A+ G G
Sbjct: 69 RDHTRPDAVAVEKVFAQHNRNTVTGTAQAAGMAMMIAARHGLPVALHTPSEVKAAISGSG 128
Query: 120 HGDKKQIHMMLKMLMPES-FFKGKDAADALAIAVCHAYHANSGYYKIAS 167
DK Q+ M+ ++ S K DAADA+A+A+CH + + A+
Sbjct: 129 RADKAQVGFMVARVLRLSAPPKPADAADAVALAICHLWRGGAARRIEAA 177
>gi|289425336|ref|ZP_06427113.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
acnes SK187]
gi|289154314|gb|EFD03002.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
acnes SK187]
Length = 196
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 50/169 (29%), Positives = 84/169 (49%), Gaps = 12/169 (7%)
Query: 6 RIIGIDPGLRRTGWGIVDVAG------DNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDV 59
R++G+DPGL R V L ++ G I + A RL ++++GL +
Sbjct: 14 RVMGVDPGLTRC-----GVGVVEGGLGSPLKLIAVGVIRTPADLDHAHRLLRIHDGLEEW 68
Query: 60 IKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVG 119
+ RP+ AVE+VF + QA +A++ A +PV+ + P+ +K A+ G G
Sbjct: 69 RDHTRPDAVAVEKVFAQHNRNTVTGTAQAAGMAMMIAARHGLPVALHTPSEVKAAISGSG 128
Query: 120 HGDKKQIHMMLKMLMPES-FFKGKDAADALAIAVCHAYHANSGYYKIAS 167
DK Q+ M+ ++ S K DAADA+A+A+CH + + A+
Sbjct: 129 RADKAQVGFMVARVLRLSAPPKPADAADAVALAICHLWRGGAARRIEAA 177
>gi|327540431|gb|EGF27016.1| crossover junction endodeoxyribonuclease ruvC [Rhodopirellula
baltica WH47]
Length = 149
Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 47/148 (31%), Positives = 76/148 (51%), Gaps = 2/148 (1%)
Query: 22 VDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKD-AV 80
+ G LC +G I S +L RL +++ GL++V + A+EQ+F + D
Sbjct: 2 ISREGPRLCLREAGVIKSRRSDTLPERLREIHVGLSEVFAAHAVDLMALEQLFSHYDRPR 61
Query: 81 ATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPE-SFF 139
+ +G AR + L+ A A +PV Y P +KK + G G K QI + +KM + S
Sbjct: 62 TAILMGHARGVICLAAASAGVPVEHYEPTRVKKVMTGNGRAPKSQIQLAVKMQLNLQSVP 121
Query: 140 KGKDAADALAIAVCHAYHANSGYYKIAS 167
+ D ADA+AI++C Y AN+ + +
Sbjct: 122 EPADVADAMAISLCGHYLANNPIDQALA 149
>gi|111023844|ref|YP_706816.1| Holliday junction resolvase [Rhodococcus jostii RHA1]
gi|123339588|sp|Q0S1C8|RUVC_RHOSR RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|110823374|gb|ABG98658.1| crossover junction endoribonuclease [Rhodococcus jostii RHA1]
Length = 189
Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 1/133 (0%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDN-LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R++G+DPGL R G+G+VD G + ++ + + L+ RL ++ E I
Sbjct: 1 MRVLGVDPGLTRCGFGVVDGGGGRTVTPIAVDVVRTPADLELSSRLLRISEAAESWIDLH 60
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
RPE A+E+VF + + QA + L+ A IPV + P+ +K AV G G DK
Sbjct: 61 RPEVVAIERVFSQHNVRTAMGTAQAGGVVALAAARRGIPVCFHTPSEVKAAVTGSGSADK 120
Query: 124 KQIHMMLKMLMPE 136
Q+ M+ ++
Sbjct: 121 AQVTAMVTRILKL 133
>gi|297183319|gb|ADI19456.1| holliday junction resolvasome, endonuclease subunit [uncultured
bacterium HF0500_16O16]
Length = 132
Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats.
Identities = 40/113 (35%), Positives = 62/113 (54%), Gaps = 1/113 (0%)
Query: 52 LYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTI 111
+++G+ +V++ +P+ A+E F KDA A KLG+AR + L+ L I Y+P I
Sbjct: 1 MFDGVNEVLQTHKPDAVAIEGSFYGKDADAAAKLGEARGVLRLAVTLTGIESVVYSPAEI 60
Query: 112 KKAVIGVGHGDKKQIHMML-KMLMPESFFKGKDAADALAIAVCHAYHANSGYY 163
KKA+ G G K+ + M+ + L + DA+DALAIA+CH S
Sbjct: 61 KKALTGNGQATKESVQYMVAQTLKMKKLPTPLDASDALAIALCHLQRPASSSS 113
>gi|282853889|ref|ZP_06263226.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
acnes J139]
gi|282583342|gb|EFB88722.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
acnes J139]
gi|314923585|gb|EFS87416.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
acnes HL001PA1]
gi|314966630|gb|EFT10729.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
acnes HL082PA2]
gi|314981359|gb|EFT25453.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
acnes HL110PA3]
gi|315092025|gb|EFT64001.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
acnes HL110PA4]
gi|315092848|gb|EFT64824.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
acnes HL060PA1]
gi|315103632|gb|EFT75608.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
acnes HL050PA2]
gi|315105681|gb|EFT77657.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
acnes HL030PA1]
gi|327327454|gb|EGE69230.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
acnes HL103PA1]
Length = 181
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 50/167 (29%), Positives = 83/167 (49%), Gaps = 12/167 (7%)
Query: 8 IGIDPGLRRTGWGIVDVAG------DNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
+G+DPGL R V +L ++ G I + A RL ++++GL +
Sbjct: 1 MGVDPGLTRC-----GVGVVEGGLGSSLKLIAVGVIRTPADLDHAHRLLRIHDGLEEWRD 55
Query: 62 NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
+ RP+ AVE+VF + QA IA++ A +PV+ + P+ +K A+ G G
Sbjct: 56 HTRPDAIAVEKVFAQHNRNTVAGTAQAAGIAMMIAARHGLPVALHTPSEVKAAISGSGRA 115
Query: 122 DKKQIHMMLKMLMPES-FFKGKDAADALAIAVCHAYHANSGYYKIAS 167
DK Q+ M+ ++ S K DAADA+A+A+CH + + A+
Sbjct: 116 DKAQVGFMVARVLRLSAPPKPADAADAVALAICHLWRGGAARRIEAA 162
>gi|169629968|ref|YP_001703617.1| crossover junction endodeoxyribonuclease RuvC [Mycobacterium
abscessus ATCC 19977]
gi|169241935|emb|CAM62963.1| Probable crossover junction endodeoxyribonuclease RuvC
[Mycobacterium abscessus]
Length = 169
Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats.
Identities = 41/147 (27%), Positives = 70/147 (47%), Gaps = 2/147 (1%)
Query: 24 VAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATL 83
+G + + + + Q L RL + E + ++ RP+ A+E+VF ++ +
Sbjct: 5 SSGRKVVALDVDVVRTPANQPLPQRLLVISEVVEHWMETHRPDVVAIERVFAQQNVSTVM 64
Query: 84 KLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPES-FFKGK 142
QA + L A I V + P+ +K AV G G DK Q+ M+ ++ K
Sbjct: 65 GTAQAGGVIALCAAKRGIEVYFHTPSEVKAAVTGNGRADKSQVTAMVTRILNLQAAPKPA 124
Query: 143 DAADALAIAVCHAYHANSGYYKIASQD 169
DAADALA+A+CH + A ++A +
Sbjct: 125 DAADALALAICHCWRA-PMLARMAKAE 150
>gi|297517034|ref|ZP_06935420.1| Holliday junction resolvase [Escherichia coli OP50]
Length = 90
Score = 101 bits (251), Expect = 5e-20, Method: Composition-based stats.
Identities = 39/88 (44%), Positives = 58/88 (65%), Gaps = 1/88 (1%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G L ++ SG I + L RL +Y G+T++I ++P
Sbjct: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRT-KVDDLPSRLKLIYAGVTEIITQFQP 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAI 93
+ A+EQVF+ K+A + LKLGQAR +AI
Sbjct: 62 DYFAIEQVFMAKNADSALKLGQARGVAI 89
>gi|145594352|ref|YP_001158649.1| Holliday junction resolvase [Salinispora tropica CNB-440]
gi|145303689|gb|ABP54271.1| Holliday junction endonuclease RuvC [Salinispora tropica CNB-440]
Length = 160
Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats.
Identities = 48/143 (33%), Positives = 72/143 (50%), Gaps = 2/143 (1%)
Query: 26 GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKL 85
G V+ + + L RL L LT ++ RP+ AVE+VF + +
Sbjct: 7 GRPCTLVAYHVVHTDPDDELPLRLLTLDRSLTALVAEHRPDSVAVERVFSQHNVRTVMGT 66
Query: 86 GQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESFFK-GKDA 144
QA +A+L+ A A +PV Y P+ +K AV G G DK Q+ M+ L+ S DA
Sbjct: 67 AQASGVAVLAGARAGLPVQTYTPSEVKAAVTGSGQADKAQMTAMVTRLLRLSAPPRPADA 126
Query: 145 ADALAIAVCHAYHANSGYYKIAS 167
ADALA+A+CH + + K+A+
Sbjct: 127 ADALALAICHVWRGGT-RSKLAT 148
>gi|167945544|ref|ZP_02532618.1| crossover junction endodeoxyribonuclease RuvC [Endoriftia
persephone 'Hot96_1+Hot96_2']
Length = 94
Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats.
Identities = 39/94 (41%), Positives = 58/94 (61%), Gaps = 1/94 (1%)
Query: 4 SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+RI+GIDPG R TG+G++D G V GT+ +L RL +++ L++VI+ +
Sbjct: 1 MLRILGIDPGSRVTGFGVIDSDGVRSSHVVHGTLRLE-GNALPPRLGEIFSRLSEVIETY 59
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPA 97
RP+ A+EQVFV K+ + LKLGQ R AI +
Sbjct: 60 RPQVMAIEQVFVAKNPQSALKLGQVRGAAICAGV 93
>gi|310830401|ref|YP_003965502.1| Crossover junction endodeoxyribonuclease ruvC [Paenibacillus
polymyxa SC2]
gi|309249868|gb|ADO59434.1| Crossover junction endodeoxyribonuclease ruvC [Paenibacillus
polymyxa SC2]
Length = 194
Score = 100 bits (249), Expect = 7e-20, Method: Composition-based stats.
Identities = 38/162 (23%), Positives = 72/162 (44%), Gaps = 16/162 (9%)
Query: 15 RRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVF 74
G+ ++ + G+ L + SGTI + + SL R+ +Y LT++ + P+ E++F
Sbjct: 19 ANCGFSVIQLIGNELLVLKSGTIETDSKLSLPQRISLIYSLLTELANTYNPKIIGCEKLF 78
Query: 75 VN------------KDAVATLKLG-QARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
N ++ A++ + + L +I + ++ P T+KK V G G
Sbjct: 79 FNPRQRVPSDGKKGRNKSASIVMTNMVTGVVHLIAGQKQIMLRDFVPGTVKKYVAGNGRA 138
Query: 122 DKKQIHMMLKMLMPESFFKGKDAADALAIAVC--HAYHANSG 161
K+ + +K L+ K + ADA AI + Y +G
Sbjct: 139 TKENVIAAVKYLLQREDVK-EHEADATAIGITAVKFYRDTNG 179
>gi|289428319|ref|ZP_06430006.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
acnes J165]
gi|289158468|gb|EFD06684.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
acnes J165]
gi|313764322|gb|EFS35686.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
acnes HL013PA1]
gi|313772295|gb|EFS38261.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
acnes HL074PA1]
gi|313792008|gb|EFS40109.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
acnes HL110PA1]
gi|313802042|gb|EFS43276.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
acnes HL110PA2]
gi|313807653|gb|EFS46140.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
acnes HL087PA2]
gi|313810160|gb|EFS47881.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
acnes HL083PA1]
gi|313812812|gb|EFS50526.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
acnes HL025PA1]
gi|313815860|gb|EFS53574.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
acnes HL059PA1]
gi|313818690|gb|EFS56404.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
acnes HL046PA2]
gi|313820460|gb|EFS58174.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
acnes HL036PA1]
gi|313822734|gb|EFS60448.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
acnes HL036PA2]
gi|313825332|gb|EFS63046.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
acnes HL063PA1]
gi|313827627|gb|EFS65341.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
acnes HL063PA2]
gi|313830491|gb|EFS68205.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
acnes HL007PA1]
gi|313833527|gb|EFS71241.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
acnes HL056PA1]
gi|313838863|gb|EFS76577.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
acnes HL086PA1]
gi|314915312|gb|EFS79143.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
acnes HL005PA4]
gi|314918137|gb|EFS81968.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
acnes HL050PA1]
gi|314920214|gb|EFS84045.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
acnes HL050PA3]
gi|314925069|gb|EFS88900.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
acnes HL036PA3]
gi|314931737|gb|EFS95568.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
acnes HL067PA1]
gi|314955638|gb|EFT00040.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
acnes HL027PA1]
gi|314958034|gb|EFT02137.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
acnes HL002PA1]
gi|314960394|gb|EFT04496.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
acnes HL002PA2]
gi|314962664|gb|EFT06764.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
acnes HL082PA1]
gi|314967470|gb|EFT11569.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
acnes HL037PA1]
gi|314973491|gb|EFT17587.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
acnes HL053PA1]
gi|314976171|gb|EFT20266.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
acnes HL045PA1]
gi|314978570|gb|EFT22664.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
acnes HL072PA2]
gi|314983807|gb|EFT27899.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
acnes HL005PA1]
gi|314987988|gb|EFT32079.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
acnes HL005PA2]
gi|314989798|gb|EFT33889.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
acnes HL005PA3]
gi|315077880|gb|EFT49931.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
acnes HL053PA2]
gi|315080505|gb|EFT52481.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
acnes HL078PA1]
gi|315084176|gb|EFT56152.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
acnes HL027PA2]
gi|315085519|gb|EFT57495.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
acnes HL002PA3]
gi|315088424|gb|EFT60400.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
acnes HL072PA1]
gi|315096038|gb|EFT68014.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
acnes HL038PA1]
gi|315098666|gb|EFT70642.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
acnes HL059PA2]
gi|315101331|gb|EFT73307.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
acnes HL046PA1]
gi|315108549|gb|EFT80525.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
acnes HL030PA2]
gi|327326318|gb|EGE68108.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
acnes HL096PA2]
gi|327330389|gb|EGE72138.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
acnes HL097PA1]
gi|327331807|gb|EGE73544.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
acnes HL096PA3]
gi|327443584|gb|EGE90238.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
acnes HL013PA2]
gi|327445788|gb|EGE92442.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
acnes HL043PA2]
gi|327448229|gb|EGE94883.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
acnes HL043PA1]
gi|327450650|gb|EGE97304.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
acnes HL087PA3]
gi|327453273|gb|EGE99927.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
acnes HL092PA1]
gi|327454012|gb|EGF00667.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
acnes HL083PA2]
gi|328753270|gb|EGF66886.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
acnes HL025PA2]
gi|328753339|gb|EGF66955.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
acnes HL020PA1]
gi|328754068|gb|EGF67684.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
acnes HL087PA1]
gi|328760720|gb|EGF74286.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
acnes HL099PA1]
Length = 181
Score = 100 bits (249), Expect = 8e-20, Method: Composition-based stats.
Identities = 49/167 (29%), Positives = 82/167 (49%), Gaps = 12/167 (7%)
Query: 8 IGIDPGLRRTGWGIVDVAG------DNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
+G+DPGL R V L ++ G I + A RL ++++GL +
Sbjct: 1 MGVDPGLTRC-----GVGVVEGGLGSPLKLIAVGVIRTPADLDHAHRLLRIHDGLEEWRD 55
Query: 62 NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
+ RP+ AVE+VF + QA +A++ A +PV+ + P+ +K A+ G G
Sbjct: 56 HTRPDAVAVEKVFAQHNRNTVTGTAQAAGMAMMIAARHGLPVALHTPSEVKAAISGSGRA 115
Query: 122 DKKQIHMMLKMLMPES-FFKGKDAADALAIAVCHAYHANSGYYKIAS 167
DK Q+ M+ ++ S K DAADA+A+A+CH + + A+
Sbjct: 116 DKAQVGFMVARVLRLSAPPKPADAADAVALAICHLWRGGAARRIEAA 162
>gi|239917791|ref|YP_002957349.1| Holliday junction endonuclease RuvC [Micrococcus luteus NCTC 2665]
gi|239838998|gb|ACS30795.1| Holliday junction endonuclease RuvC [Micrococcus luteus NCTC 2665]
Length = 211
Score = 99.2 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 41/133 (30%), Positives = 63/133 (47%), Gaps = 1/133 (0%)
Query: 11 DPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAA 69
DPGL R G +VDV V + L RL ++ E ++ V+ RP+ AA
Sbjct: 2 DPGLTRCGIAVVDVDARRRAALVHVEVAGTPPTAPLDERLLRIDEAVSAVLAAHRPDRAA 61
Query: 70 VEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMM 129
VE++F N + L QA +AI + A A +PV + P+ +K AV G G K+Q+ M
Sbjct: 62 VERMFANTNTPTVLGTAQAAGVAIAAAARAGVPVGLHTPSEVKAAVTGHGDAGKEQVTTM 121
Query: 130 LKMLMPESFFKGK 142
+ ++
Sbjct: 122 VTRILRLDAPPRP 134
>gi|254449901|ref|ZP_05063338.1| crossover junction endodeoxyribonuclease RuvC [Octadecabacter
antarcticus 238]
gi|198264307|gb|EDY88577.1| crossover junction endodeoxyribonuclease RuvC [Octadecabacter
antarcticus 238]
Length = 173
Score = 99.2 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 75/144 (52%), Positives = 93/144 (64%), Gaps = 1/144 (0%)
Query: 22 VDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVA 81
+ V G L V++G S LA RL L++ L VI + P+ AAVEQ FVN + A
Sbjct: 2 ILVNGSRLTHVANGVCKSGKG-DLAQRLLALHDQLVAVIAEFAPDAAAVEQTFVNSNGAA 60
Query: 82 TLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESFFKG 141
TLKLGQAR IA+L PA A + V EYAPN IKKAV+GVGH DK QI M+K+ +P G
Sbjct: 61 TLKLGQARGIAMLVPARAGLAVGEYAPNAIKKAVVGVGHADKAQIAHMIKLQLPGVELAG 120
Query: 142 KDAADALAIAVCHAYHANSGYYKI 165
DAADALAIA+CHA+H S ++
Sbjct: 121 PDAADALAIAICHAHHLQSASARV 144
>gi|281413716|ref|ZP_06245458.1| Holliday junction endonuclease RuvC [Micrococcus luteus NCTC 2665]
Length = 193
Score = 98.8 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 41/133 (30%), Positives = 63/133 (47%), Gaps = 1/133 (0%)
Query: 11 DPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAA 69
DPGL R G +VDV V + L RL ++ E ++ V+ RP+ AA
Sbjct: 2 DPGLTRCGIAVVDVDARRRAALVHVEVAGTPPTAPLDERLLRIDEAVSAVLAAHRPDRAA 61
Query: 70 VEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMM 129
VE++F N + L QA +AI + A A +PV + P+ +K AV G G K+Q+ M
Sbjct: 62 VERMFANTNTPTVLGTAQAAGVAIAAAARAGVPVGLHTPSEVKAAVTGHGDAGKEQVTTM 121
Query: 130 LKMLMPESFFKGK 142
+ ++
Sbjct: 122 VTRILRLDAPPRP 134
>gi|99034737|ref|ZP_01314667.1| hypothetical protein Wendoof_01000516 [Wolbachia endosymbiont of
Drosophila willistoni TSC#14030-0811.24]
Length = 110
Score = 98.4 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 42/107 (39%), Positives = 66/107 (61%), Gaps = 1/107 (0%)
Query: 56 LTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAV 115
+ + I + P EAAVE++ + K ++L LG AR + IL+ + ++ ++EY N +KK++
Sbjct: 3 IKESISLYSPNEAAVEKILLIKS-KSSLTLGYARGVVILALKITKLTMNEYDANYVKKSI 61
Query: 116 IGVGHGDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGY 162
G GH DK QI M+K ++ K AADALA+A+CHAY S +
Sbjct: 62 TGNGHADKDQIIFMVKQIVKNLSIKCHHAADALAVAICHAYTKGSCF 108
>gi|255068675|ref|ZP_05320530.1| crossover junction endodeoxyribonuclease RuvC [Neisseria sicca
ATCC 29256]
gi|255047075|gb|EET42539.1| crossover junction endodeoxyribonuclease RuvC [Neisseria sicca
ATCC 29256]
Length = 82
Score = 98.0 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 34/82 (41%), Positives = 55/82 (67%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M ++RI+GIDPG R TG+G++DV G + +V+SG I + LA R+ + + +V+
Sbjct: 1 MAATVRILGIDPGSRVTGFGVIDVRGRDHFYVASGCIKTPADAPLADRIAVIVRHIGEVV 60
Query: 61 KNWRPEEAAVEQVFVNKDAVAT 82
++P++AAVEQVFVN + +T
Sbjct: 61 AVYKPQQAAVEQVFVNVNPAST 82
>gi|218290751|ref|ZP_03494833.1| Holliday junction resolvasome endonuclease subunit-like protein
[Alicyclobacillus acidocaldarius LAA1]
gi|218239289|gb|EED06488.1| Holliday junction resolvasome endonuclease subunit-like protein
[Alicyclobacillus acidocaldarius LAA1]
Length = 210
Score = 96.5 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 34/133 (25%), Positives = 59/133 (44%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+GID G R GW ++D+ GD ++ G I +L + L+ + ++I+N+
Sbjct: 1 MRILGIDHGTRYAGWAVLDIKGDKHEWLGYGLITLTDEDTLDATMGALHTSVENLIQNYE 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P A+E+ + T L + A L+ L IP+ + P +K G G +K
Sbjct: 61 PTIVALEEPMAMRSGKVTRVLIEMYTTARLAAVLRHIPIIDVTPQKLKLYTAGHGGAEKD 120
Query: 125 QIHMMLKMLMPES 137
+ L
Sbjct: 121 DVARALCEHYGLE 133
>gi|313837774|gb|EFS75488.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
acnes HL037PA2]
gi|314927344|gb|EFS91175.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
acnes HL044PA1]
gi|314972426|gb|EFT16523.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
acnes HL037PA3]
gi|328907429|gb|EGG27195.1| crossover junction endodeoxyribonuclease RuvC [Propionibacterium
sp. P08]
Length = 181
Score = 96.1 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 46/158 (29%), Positives = 79/158 (50%), Gaps = 12/158 (7%)
Query: 8 IGIDPGLRRTGWGIVDVAGDNL------CFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
+G+DPGL R V ++ G I + A RL ++++GL +
Sbjct: 1 MGVDPGLTRC-----GVGVVEGGLGVPVKLIAVGVIRTPADLDHAHRLLRIHDGLEEWRD 55
Query: 62 NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
+ RP+ A+E+VF + QA +A++ A +PV+ + P+ +K A+ G G
Sbjct: 56 HTRPDAIAIEKVFAQHNRNTVTGTAQAAGMAMMIAARHGLPVALHTPSEVKAAISGSGRA 115
Query: 122 DKKQIHMMLKMLMPES-FFKGKDAADALAIAVCHAYHA 158
DK Q+ +M+ ++ S K DAADA+A+A+CH +
Sbjct: 116 DKAQVGLMVARVLRLSAPPKPADAADAVALAICHLWRG 153
>gi|124516216|gb|EAY57724.1| probable crossover junction endodeoxyribonuclease (RuvC)
[Leptospirillum rubarum]
Length = 158
Score = 96.1 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 35/147 (23%), Positives = 65/147 (44%), Gaps = 3/147 (2%)
Query: 8 IGIDPGLRRTGWGIVDVAG-DNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
+G+DPGL TG+ +++ D L ++ GT+ + ++ R+ L++ L ++ + +
Sbjct: 2 LGVDPGLAATGFAVLEGPSLDRLRVLAQGTVRTEPAFPVSRRIGILFDRLDGLLSEYPVK 61
Query: 67 EAAVEQVFVNK-DAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
A+E F + A L LG I L IP+ +P +K + G G K+
Sbjct: 62 GIALEDHFSRRASPGAGLMLGPVVGIVALLADRHGIPLLPISPRELKHRITGTGAASKEA 121
Query: 126 IHMMLKM-LMPESFFKGKDAADALAIA 151
+ L + L DA+ +A
Sbjct: 122 VQRALSVWLGNGLRIGSTHEGDAMGLA 148
>gi|329945622|ref|ZP_08293355.1| crossover junction endodeoxyribonuclease [Actinomyces sp. oral
taxon 170 str. F0386]
gi|328528625|gb|EGF55590.1| crossover junction endodeoxyribonuclease [Actinomyces sp. oral
taxon 170 str. F0386]
Length = 189
Score = 95.7 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 37/134 (27%), Positives = 63/134 (47%), Gaps = 1/134 (0%)
Query: 27 DNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLG 86
+ V G + + QS RL + E + D I P ++E+VF + + + +
Sbjct: 7 RQVRLVEVGVVRTPPSQSPELRLLTITETIEDWIARLGPSVVSIERVFAQDNLRSVIGVA 66
Query: 87 QARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESFFK-GKDAA 145
Q A+ + A + + V+++ P+ K AV G G DK Q+ M+ ++ DAA
Sbjct: 67 QVMGTAMATAARSGLEVAQHTPSEAKAAVTGSGTADKTQVQAMVTRVLGLDAPPRPADAA 126
Query: 146 DALAIAVCHAYHAN 159
DALA A+CH +
Sbjct: 127 DALAQAICHGWRGG 140
>gi|206603016|gb|EDZ39496.1| Probable crossover junction endodeoxyribonuclease (RuvC)
[Leptospirillum sp. Group II '5-way CG']
Length = 158
Score = 95.7 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 33/147 (22%), Positives = 65/147 (44%), Gaps = 3/147 (2%)
Query: 8 IGIDPGLRRTGWGIVDVAG-DNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
+G+DPGL TG+ +++ D L ++ GT+ + ++ R+ L++ L ++ + +
Sbjct: 2 LGVDPGLAATGFAVLEGPSLDRLRVLAQGTVRTDSTLPVSRRIGLLFDRLDALLSEYPVK 61
Query: 67 EAAVEQVFVNK-DAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
A+E F + A L LG I L +P+ +P +K + G G K+
Sbjct: 62 GIALEDHFSRRASPGAGLMLGPVVGIVALLADRHGVPLLPISPRELKHRITGTGAASKEA 121
Query: 126 IHMMLKMLMP-ESFFKGKDAADALAIA 151
+ L + + DA+ +A
Sbjct: 122 VQNALSVWLGAGLRIGSTHEGDAMGLA 148
>gi|126641559|ref|YP_001084543.1| holliday junction nuclease [Acinetobacter baumannii ATCC 17978]
Length = 141
Score = 95.3 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 48/116 (41%), Positives = 73/116 (62%)
Query: 45 LAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVS 104
+ RL +++ G+ ++K P EAAVEQVF+ ++ + LKLGQAR AI + + V+
Sbjct: 1 MPERLKRIFAGVERIVKFHGPTEAAVEQVFMAQNPDSALKLGQARGAAIAALVNLDLQVA 60
Query: 105 EYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
EY IK++V+G G DK+Q+ MM+ L+ + DAADALA A+CHA+ + S
Sbjct: 61 EYTARQIKQSVVGYGAADKEQVQMMVMRLLNLTIKPQADAADALAAAICHAHASGS 116
>gi|225076157|ref|ZP_03719356.1| hypothetical protein NEIFLAOT_01189 [Neisseria flavescens
NRL30031/H210]
gi|224952500|gb|EEG33709.1| hypothetical protein NEIFLAOT_01189 [Neisseria flavescens
NRL30031/H210]
Length = 107
Score = 94.6 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 35/93 (37%), Positives = 53/93 (56%)
Query: 73 VFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKM 132
+FVN + ATL LGQAR AI + + +PV EY +K+AV+G G K+Q+ M+
Sbjct: 1 MFVNVNPAATLMLGQARGAAIAALVMHDLPVFEYTALQVKQAVVGKGKAAKEQVQHMVVQ 60
Query: 133 LMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
++ S DAAD LA+A+ HA + ++
Sbjct: 61 MLALSGTPQADAADGLAVALTHALRNHGLASQL 93
>gi|332756764|gb|EGJ87111.1| crossover junction endodeoxyribonuclease RuvC [Shigella flexneri
4343-70]
Length = 136
Score = 93.8 bits (232), Expect = 7e-18, Method: Composition-based stats.
Identities = 37/99 (37%), Positives = 61/99 (61%)
Query: 43 QSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIP 102
L RL +Y G+T++I ++P+ A+EQVF+ K+A + LKLGQAR +AI++ +P
Sbjct: 2 DDLPSRLKLIYAGVTEIITQFQPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELP 61
Query: 103 VSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESFFKG 141
V EYA +K+ V+G+G +K Q+ M++ L+
Sbjct: 62 VFEYAARQVKQTVVGMGSAEKSQVQHMVRTLLKLPANPQ 100
>gi|332095256|gb|EGJ00283.1| crossover junction endodeoxyribonuclease RuvC [Shigella dysenteriae
155-74]
Length = 136
Score = 93.4 bits (231), Expect = 9e-18, Method: Composition-based stats.
Identities = 38/99 (38%), Positives = 62/99 (62%)
Query: 43 QSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIP 102
L FRL +Y G+T++I ++P+ A+EQVF+ K+A + LKLGQAR +AI++ +P
Sbjct: 2 DDLPFRLKLIYAGVTEIITQFQPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELP 61
Query: 103 VSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESFFKG 141
V EYA +K+ V+G+G +K Q+ M++ L+
Sbjct: 62 VFEYAARQVKQTVVGIGSAEKSQVQHMVRTLLKLPANPQ 100
>gi|309789259|ref|ZP_07683852.1| crossover junction endodeoxyribonuclease RuvC [Shigella dysenteriae
1617]
gi|308923013|gb|EFP68527.1| crossover junction endodeoxyribonuclease RuvC [Shigella dysenteriae
1617]
Length = 136
Score = 93.4 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 37/99 (37%), Positives = 61/99 (61%)
Query: 43 QSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIP 102
L RL +Y G+T++I ++P+ A+EQVF+ K+A + LKLGQAR +AI++ +P
Sbjct: 2 DDLPSRLKLIYAGVTEIITQFQPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELP 61
Query: 103 VSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESFFKG 141
V EYA +K+ V+G+G +K Q+ M++ L+
Sbjct: 62 VFEYAARQVKQTVVGIGSAEKSQVQHMVRTLLKLPANPQ 100
>gi|251771976|gb|EES52548.1| probable crossover junction endodeoxyribonuclease (RuvC)
[Leptospirillum ferrodiazotrophum]
Length = 157
Score = 93.0 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 41/147 (27%), Positives = 54/147 (36%), Gaps = 3/147 (2%)
Query: 8 IGIDPGLRRTGWGIVDVAG-DNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
+G+DPGL RTGW +V L F GTI + L R+ + L + I+
Sbjct: 1 MGVDPGLARTGWAVVSGESFQRLSFDDGGTIKTAAGGLLHERIGAICGELEEAIRRHGVS 60
Query: 67 EAAVEQVFVNKDAVAT-LKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
AVE F + A LG L R+ P +K V G G K
Sbjct: 61 ALAVEDHFSRRSAPGVGHLLGPVIGAVALLAFRNRLTFLLIPPKELKHRVTGTGEAGKAA 120
Query: 126 IHMMLKMLM-PESFFKGKDAADALAIA 151
+ L PE DAL +A
Sbjct: 121 LIRSLSFWFGPEIDIGTTHEGDALGLA 147
>gi|292670921|ref|ZP_06604347.1| crossover junction endoribonuclease subunit C [Selenomonas noxia
ATCC 43541]
gi|292647542|gb|EFF65514.1| crossover junction endoribonuclease subunit C [Selenomonas noxia
ATCC 43541]
Length = 126
Score = 93.0 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 30/95 (31%), Positives = 51/95 (53%)
Query: 48 RLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYA 107
RL ++Y L +I+ + P+ VEQ+F N++ + +GQAR I +L+ A IP+ E
Sbjct: 6 RLLKIYTELEVLIQKYAPDAMGVEQLFFNRNVTTAIPVGQARGIVLLAAAQNNIPIVERT 65
Query: 108 PNTIKKAVIGVGHGDKKQIHMMLKMLMPESFFKGK 142
P +K++V G G K+Q+ M+ L+
Sbjct: 66 PLQVKQSVTGYGKATKEQVIYMVTKLLNLPAPPHP 100
>gi|311068886|ref|YP_003973809.1| crossover junction endodeoxyribonuclease RuvC [Bacillus atrophaeus
1942]
gi|310869403|gb|ADP32878.1| crossover junction endodeoxyribonuclease RuvC [Bacillus atrophaeus
1942]
Length = 167
Score = 91.5 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 40/160 (25%), Positives = 73/160 (45%), Gaps = 11/160 (6%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSC--VRQSLAFRLCQLYEGLTDVIKN 62
+ II D L TG+ + +V G +L + G+I + ++S FRL + + + + K
Sbjct: 1 MIIIAFDLSLSNTGYAVGEVKGRSLKLIEVGSIGTKRFAKRSTGFRLNYIAKEIRGLYKK 60
Query: 63 WRPEEAAVEQVFVNKDAVATLKLGQARAI-AILSPALARIPVSEYAPNTIKKAVIGVGHG 121
+ ++ E+ F N VAT ++ + + +++ SE P +IKK + G G
Sbjct: 61 YEIDKVVKERSFSNARIVATQQIYKVNGVFELMTHIANHDDFSEITPPSIKKQLTGNGKA 120
Query: 122 DKKQIHMMLKMLMPE------SFFKGKDAADALA--IAVC 153
K ++ + + FK D +DA+A IA C
Sbjct: 121 TKNEVADAVLKQFRDIMGNTTVKFKNNDESDAVAVLIAYC 160
>gi|225631047|ref|ZP_03787789.1| crossover junction endodeoxyribonuclease RuvC [Wolbachia
endosymbiont of Muscidifurax uniraptor]
gi|225591255|gb|EEH12395.1| crossover junction endodeoxyribonuclease RuvC [Wolbachia
endosymbiont of Muscidifurax uniraptor]
Length = 108
Score = 91.1 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 41/107 (38%), Positives = 68/107 (63%), Gaps = 1/107 (0%)
Query: 4 SIRIIGIDPGLRRTGWGIVDV-AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
++IIG+DPG+ +TGW I+ + +N+ F+ GTI + + RL ++E L VI
Sbjct: 1 MVKIIGLDPGISKTGWAIISLNEKNNIEFLGGGTISTDGKLGTGERLHTIFEQLKKVISL 60
Query: 63 WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPN 109
+ P EAAVE++FVNK+ ++L LG AR + IL+ + ++ ++EY N
Sbjct: 61 YSPNEAAVEKIFVNKNPKSSLTLGYARGVVILALKITKLTMNEYDAN 107
>gi|320534405|ref|ZP_08034888.1| crossover junction endodeoxyribonuclease [Actinomyces sp. oral
taxon 171 str. F0337]
gi|320133380|gb|EFW25845.1| crossover junction endodeoxyribonuclease [Actinomyces sp. oral
taxon 171 str. F0337]
Length = 178
Score = 90.7 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 37/129 (28%), Positives = 62/129 (48%), Gaps = 1/129 (0%)
Query: 32 VSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAI 91
+ G + + QS RL + E + D I P ++E+VF + + + + Q
Sbjct: 1 MEVGVVRTPPSQSPELRLLTITEAIEDWIARLGPTVVSIERVFAQDNLRSVIGVAQVMGT 60
Query: 92 AILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESFFK-GKDAADALAI 150
A+ + A A + V+++ P+ K AV G G DK Q+ M+ ++ DAADALA
Sbjct: 61 AMTTAARAGLEVAQHTPSEAKAAVTGSGIADKAQVQTMVTRILGLDAPPRPADAADALAQ 120
Query: 151 AVCHAYHAN 159
A+CH +
Sbjct: 121 AICHGWRGG 129
>gi|126659978|ref|ZP_01731101.1| Holliday juction resolvase; RuvC [Cyanothece sp. CCY0110]
gi|126618743|gb|EAZ89489.1| Holliday juction resolvase; RuvC [Cyanothece sp. CCY0110]
Length = 130
Score = 89.9 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 22/123 (17%), Positives = 49/123 (39%), Gaps = 1/123 (0%)
Query: 31 FVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARA 90
V G + + L +RL ++ L ++++ ++ A+EQ F+ + + KL Q
Sbjct: 1 MVDFGLVETDSHDPLPYRLGEIEADLREILQEYQVTNIAIEQPFIQPEFPSMTKLLQVLG 60
Query: 91 IAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESFFKGKDAADALAI 150
+ L + P T K + +++ + +++ L DA+A+
Sbjct: 61 VINLVAYRHGCLPTMIYPATWKSNL-DHPKAEREDLTAIVEELFDLQSILLNQEVDAIAV 119
Query: 151 AVC 153
A
Sbjct: 120 AYT 122
>gi|269219376|ref|ZP_06163230.1| crossover junction endodeoxyribonuclease RuvC [Actinomyces sp. oral
taxon 848 str. F0332]
gi|269211169|gb|EEZ77509.1| crossover junction endodeoxyribonuclease RuvC [Actinomyces sp. oral
taxon 848 str. F0332]
Length = 197
Score = 89.2 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 33/124 (26%), Positives = 60/124 (48%), Gaps = 1/124 (0%)
Query: 20 GIVDVAG-DNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKD 78
G VD G + V + S + RL + +GL VI ++P+ AVE+VF +
Sbjct: 2 GTVDAGGARRVSLVDMRVVRSPAELAPHKRLLIIADGLQKVIDAFKPDVVAVERVFAQSN 61
Query: 79 AVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESF 138
+ Q I +L+ A A + ++ + P+ +K AV G G DK+Q+ +M++ ++ +
Sbjct: 62 VRSVTGTAQVAGIVMLAAARAGLRLAMHTPSEVKAAVTGNGRADKRQVQVMVQRILGLAS 121
Query: 139 FKGK 142
Sbjct: 122 LPRP 125
>gi|227488785|ref|ZP_03919101.1| crossover junction endodeoxyribonuclease [Corynebacterium
glucuronolyticum ATCC 51867]
gi|227091207|gb|EEI26519.1| crossover junction endodeoxyribonuclease [Corynebacterium
glucuronolyticum ATCC 51867]
Length = 175
Score = 88.8 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 31/96 (32%), Positives = 52/96 (54%)
Query: 45 LAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVS 104
+ RL +LYE +TD I ++P+ A+E++F + L A + IL+ + A + V
Sbjct: 1 MGDRLKELYEAITDWIAEYKPDVVAMERLFERGEVSTVLHTAHAVGVLILAASQANLDVH 60
Query: 105 EYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESFFK 140
EY P+ +KKA+ G G DKKQ+ M+ ++
Sbjct: 61 EYTPSQVKKAITGNGRADKKQMTAMVTRILGLENPP 96
>gi|284800174|ref|ZP_06390579.1| crossover junction endodeoxyribonuclease RuvC [Neisseria subflava
NJ9703]
gi|284795773|gb|EFC51120.1| crossover junction endodeoxyribonuclease RuvC [Neisseria subflava
NJ9703]
Length = 96
Score = 88.0 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 29/82 (35%), Positives = 45/82 (54%)
Query: 84 KLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESFFKGKD 143
LGQAR AI + + +PV EY +K+AV+G G K+Q+ M+ ++ S D
Sbjct: 1 MLGQARGAAIAALVMHDLPVFEYTALQVKQAVVGKGKAAKEQVQHMVVQMLALSGTPQAD 60
Query: 144 AADALAIAVCHAYHANSGYYKI 165
AAD LA+A+ HA + ++
Sbjct: 61 AADGLAVALTHALRNHGLASQL 82
>gi|325068882|ref|ZP_08127555.1| Holliday junction resolvase [Actinomyces oris K20]
Length = 106
Score = 87.6 bits (216), Expect = 5e-16, Method: Composition-based stats.
Identities = 27/106 (25%), Positives = 50/106 (47%)
Query: 32 VSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAI 91
+ G + + QS RL + E + D I P ++E+VF + + + + Q
Sbjct: 1 MEVGVVRTPPSQSPELRLLTITEAIEDWIARLGPSVVSIERVFAQDNLRSVIGVAQVMGT 60
Query: 92 AILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPES 137
A+ + A A + V+++ P+ K AV G G DK Q+ M+ ++
Sbjct: 61 AMATAARAGLEVAQHTPSEAKAAVTGSGTADKAQVQAMVTRILGLD 106
>gi|298252761|ref|ZP_06976555.1| Holliday junction resolvasome, endonuclease subunit [Gardnerella
vaginalis 5-1]
gi|297533125|gb|EFH72009.1| Holliday junction resolvasome, endonuclease subunit [Gardnerella
vaginalis 5-1]
Length = 161
Score = 86.1 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 31/106 (29%), Positives = 52/106 (49%)
Query: 37 IVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSP 96
+ S S RL ++Y GL + I+ + P+ ++E+VF ++ L Q IA+L+
Sbjct: 2 LRSEPDLSQDLRLLKIYNGLVEKIERFSPDTVSIERVFAQENRNTVLGTAQVAGIAMLAA 61
Query: 97 ALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESFFKGK 142
A IPV+ + P +K AV G G K Q+ M+ L+ +
Sbjct: 62 AQRNIPVALHTPTEVKLAVAGNGKAQKPQVERMVARLLGLNVLPTP 107
>gi|307149943|ref|YP_003890986.1| Holliday junction resolvasome endonuclease subunit-like protein
[Cyanothece sp. PCC 7822]
gi|306986743|gb|ADN18621.1| Holliday junction resolvasome endonuclease subunit-like protein
[Cyanothece sp. PCC 7822]
Length = 392
Score = 84.9 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 32/159 (20%), Positives = 64/159 (40%), Gaps = 13/159 (8%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCF---VSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
R +GIDP L W +++ AG++ + GTI + ++ + RL +L + L ++++
Sbjct: 231 RTLGIDPALGTLRWAVLEEAGNDYDLPLILDYGTITTTPKRPTSQRLSELEQDLVEILRE 290
Query: 63 WRPEEAAVEQVFVN----KDAVATLKLGQARAIAILSPALARIPVSEY-APNTIKKAVIG 117
+ P + A+E ++N ++ + + L + V K V
Sbjct: 291 FNPTDVAIEIPYLNTESEQNPKNIQNALEVIGVVDLVCFREKQIVPVRLYSGQWKSHVCD 350
Query: 118 VGHGDKKQIHMMLKMLMPESFFKGKDAADALAI---AVC 153
D ++I L + DA+ I A+C
Sbjct: 351 Y-RADNEEITDTFVGLFNLQVRPTERL-DAIGIAYAAIC 387
>gi|228983127|ref|ZP_04143386.1| Crossover junction endodeoxyribonuclease ruvC [Bacillus
thuringiensis Bt407]
gi|228777310|gb|EEM25618.1| Crossover junction endodeoxyribonuclease ruvC [Bacillus
thuringiensis Bt407]
Length = 163
Score = 84.5 bits (208), Expect = 4e-15, Method: Composition-based stats.
Identities = 26/149 (17%), Positives = 58/149 (38%), Gaps = 12/149 (8%)
Query: 17 TGWGIVD--VAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVF 74
G+ ++ + + + +GT+ + + L RL +YE + + + A E++F
Sbjct: 1 MGYAFIEYDIDTNQYMKLDTGTLKTKSSELLEDRLLTIYEMIKTYNLKYNTDIIACEKLF 60
Query: 75 VN-------KDAV-ATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
N ++ + + + L + + ++ P T+KK V G G K+ +
Sbjct: 61 YNPKQKNDNRNKSASIMTTNMVTGVVFLVAGELGLWIKDFVPGTVKKHVAGYGRATKEDL 120
Query: 127 HMMLKML--MPESFFKGKDAADALAIAVC 153
++ K DA+ IA+
Sbjct: 121 QKAIEDFCEQHGIKAKTNHETDAIGIALT 149
>gi|156564173|ref|YP_001429683.1| RuvC [Bacillus phage 0305phi8-36]
gi|154622870|gb|ABS83750.1| RuvC [Bacillus phage 0305phi8-36]
Length = 177
Score = 84.5 bits (208), Expect = 4e-15, Method: Composition-based stats.
Identities = 44/182 (24%), Positives = 73/182 (40%), Gaps = 25/182 (13%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFR---LCQLYEGLTDVIK 61
+RI+GID L TG+ I D + + I + ++++ R + L L+ ++
Sbjct: 1 MRIMGIDASLSTTGYAIYDTEIGDFILID--KIRTSIKKATPTRSKRIQYLCAELSHIMF 58
Query: 62 NWRPEEAAVEQVFVNKDAVATLKLGQARAIA-ILSPALARIPVSEYAPNTIKKAVIGVGH 120
+ E ++V + A L LG R L L + +KKAV G G+
Sbjct: 59 WNYVDVVVTEDIYVAQ-KSAALPLGMVRGAIEQLVYDLEFEGLHIIESTKMKKAVTGNGN 117
Query: 121 GDKKQIHMMLKMLMPESF----------------FKGKDAADALAIAVCHAYHANSGYYK 164
+K + LK + +S K +D ADA + + HAY A+
Sbjct: 118 ANKLLTYETLKEIYKDSPLVMEALGKELISDNSAKKNEDMADA--VGLVHAYKADPSQAH 175
Query: 165 IA 166
IA
Sbjct: 176 IA 177
>gi|227504980|ref|ZP_03935029.1| Holliday junction resolvase [Corynebacterium striatum ATCC 6940]
gi|227198430|gb|EEI78478.1| Holliday junction resolvase [Corynebacterium striatum ATCC 6940]
Length = 160
Score = 84.5 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 41/136 (30%), Positives = 72/136 (52%), Gaps = 2/136 (1%)
Query: 32 VSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAI 91
++ G + + L RL +L + + +++++P+ A+E+VF + ++ +
Sbjct: 1 MAVGVARTPSDKELTERLLRLSIAVKEWMEDYKPDVIAIERVFERGEVSTVMQTAHVVGV 60
Query: 92 AILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPE-SFFKGKDAADALAI 150
+L+ A IPV Y P+ +KKA+ G G DKKQ+ M+ ++ K DAADALA+
Sbjct: 61 VVLAAAERDIPVHMYTPSEVKKAISGNGRADKKQMTAMITRILGLGEPPKPADAADALAL 120
Query: 151 AVCHAYHANSGYYKIA 166
AVCH + A +I
Sbjct: 121 AVCHCWRA-PALARIG 135
>gi|194100519|ref|YP_002003844.1| gp5 [Mycobacterium phage Nigel]
gi|192758235|gb|ACF05008.1| gp5 [Mycobacterium phage Nigel]
Length = 193
Score = 83.8 bits (206), Expect = 7e-15, Method: Composition-based stats.
Identities = 28/163 (17%), Positives = 60/163 (36%), Gaps = 19/163 (11%)
Query: 5 IRIIGIDPGLRRTGWGIVD------------------VAGDNLCFVSSGTIVSCVRQSLA 46
+RI+GID L TG +D D + G ++++
Sbjct: 1 MRILGIDTSLTGTGLARIDLATWPPSNPPRQDDETVVFTADTATVSAPGPTKDKSKRAMC 60
Query: 47 FRLCQLYEGLTDVIKN-WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSE 105
R+ L + + ++ +P+ +E + + L I +P++
Sbjct: 61 RRVNALIDQIEWCFQDGEKPDAVGMEALAYGAKGASAWVLPWVFGRVIELCEKYDVPLTI 120
Query: 106 YAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESFFKGKDAADAL 148
+ K G G+ DK+ + + + +P++ + + ADAL
Sbjct: 121 VGTSQRAKFATGKGNADKETVLLAIAKALPQADPRNNNEADAL 163
>gi|169836416|ref|ZP_02869604.1| crossover junction endodeoxyribonuclease RuvC [candidate division
TM7 single-cell isolate TM7a]
Length = 99
Score = 83.0 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 46/94 (48%)
Query: 27 DNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLG 86
VS+G + + L RL ++Y L ++I P+ +VE++F K+ + +
Sbjct: 4 GKYKMVSAGVVRTPPHTPLPDRLEEIYNSLKEIIHETNPDIMSVEKLFFAKNVTTAISVS 63
Query: 87 QARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
AR + +L+ A I ++EY P IK + G G
Sbjct: 64 HARGVVLLTAKQAGIKIAEYTPLQIKNTLTGYGK 97
>gi|228904800|ref|ZP_04068854.1| Crossover junction endodeoxyribonuclease ruvC [Bacillus
thuringiensis IBL 4222]
gi|228854814|gb|EEM99418.1| Crossover junction endodeoxyribonuclease ruvC [Bacillus
thuringiensis IBL 4222]
Length = 143
Score = 80.7 bits (198), Expect = 6e-14, Method: Composition-based stats.
Identities = 20/128 (15%), Positives = 41/128 (32%), Gaps = 3/128 (2%)
Query: 28 NLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQ 87
+ +G I + ++ E + + + + + E F + KL +
Sbjct: 4 KHDIIEAGKIDIPSKGDEGDKIIYQIERIEALFEKYDITKILCEDQFSKLNIDTLKKLTR 63
Query: 88 ARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLM---PESFFKGKDA 144
+ ++ + P + +K G G K+ + L F K D
Sbjct: 64 VSGTILYLAKKHKLEIELIYPTSWRKIFHGSGKAKKEDTFHKVVALYEFENLEFKKDNDL 123
Query: 145 ADALAIAV 152
DA+ IA
Sbjct: 124 TDAIGIAW 131
>gi|255103337|ref|ZP_05332314.1| crossover junction endodeoxyribonuclease ruvC [Clostridium
difficile QCD-63q42]
gi|255652437|ref|ZP_05399339.1| crossover junction endodeoxyribonuclease ruvC [Clostridium
difficile QCD-37x79]
Length = 164
Score = 80.7 bits (198), Expect = 7e-14, Method: Composition-based stats.
Identities = 29/156 (18%), Positives = 65/156 (41%), Gaps = 13/156 (8%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQ--SLAFRLCQLYEGLTDVIKNWR 64
++ +D + TGW ++ N + G IV+ + S R+C + + ++I
Sbjct: 2 VLALDISMSSTGWAVI---NRNKKVLKYGKIVTKKDKFKSEDERMCYICNTIQEIITTHN 58
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
+ VE F ++++ L L + + + L I + P +I+K ++ G K+
Sbjct: 59 IQIVLVEDQFTSRNSKTILSLRKLLGAIMRTVKLNNIEIEYMYPVSIRKYLMNNGKAKKE 118
Query: 125 QIHMMLKM--------LMPESFFKGKDAADALAIAV 152
++ ++ + K D DA+A+ +
Sbjct: 119 EVAAYVRENIIDIGEYIDRTCKAKTSDIYDAIALGI 154
>gi|296169771|ref|ZP_06851386.1| possible gp67 [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295895565|gb|EFG75264.1| possible gp67 [Mycobacterium parascrofulaceum ATCC BAA-614]
Length = 205
Score = 80.3 bits (197), Expect = 8e-14, Method: Composition-based stats.
Identities = 36/168 (21%), Positives = 57/168 (33%), Gaps = 13/168 (7%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNL-CFVSSGTIVSCVRQSLAFRLCQLYEGLTD----- 58
+ + GIDP L TG ++ L + GT+ + R+ +
Sbjct: 1 MIVAGIDPSLTNTGIAVLHNGQPMLLRSIGHGTLSVRSYAHRSDRIVAECRAVMAVLADE 60
Query: 59 -------VIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTI 111
R + A +E +T + RIP+ AP T
Sbjct: 61 CDERNTLRAARSRIDLAVIEGPAYGACNASTHDGSGLWWGLYSTLRARRIPIVVVAPTTR 120
Query: 112 KKAVIGVGHGDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHAN 159
K G G+ DK+ I ++ P + D ADAL +A A+H
Sbjct: 121 AKWATGKGNADKRAILTTVRSWWPNTHIANHDQADALVLAAIGAFHHG 168
>gi|325474388|gb|EGC77576.1| crossover junction endodeoxyribonuclease ruvC [Treponema
denticola F0402]
Length = 98
Score = 79.5 bits (195), Expect = 2e-13, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 49/84 (58%)
Query: 15 RRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVF 74
TG+GI+ + + + G+I + RL ++++ ++++I+ +RP+EA +E ++
Sbjct: 2 ANTGYGIISFSNNRFECIEYGSISTEPHLLQGERLLKIFDRVSELIEKYRPKEAGIETLY 61
Query: 75 VNKDAVATLKLGQARAIAILSPAL 98
K+A + + + +AR + +L+ A
Sbjct: 62 FAKNATSAMSVSEARGVVLLALAQ 85
>gi|327197966|ref|YP_004306283.1| putative Holliday junction resolvase [Lactococcus phage 949]
gi|306009286|gb|ADM73681.1| putative Holliday junction resolvase [Lactococcus phage 949]
Length = 226
Score = 78.8 bits (193), Expect = 2e-13, Method: Composition-based stats.
Identities = 36/167 (21%), Positives = 72/167 (43%), Gaps = 18/167 (10%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSL---------AFRLCQLYEG 55
+ I G+DP L+ +G I+D + V G I + + +L +YE
Sbjct: 1 MYIYGLDPSLKNSGIVIIDKDTKEIVHV--GGIRTDNIKDYKNLPEEMRNPKKLRFIYEE 58
Query: 56 LTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAV 115
LT + + + P A +E+ + +T + + I + + + Y TI++ +
Sbjct: 59 LTKLTRKYPPSVAVIER-GFTRFNKSTQVVFRVHG--IFNLVFSEVDNIYYPAKTIRETL 115
Query: 116 IGVGHGDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGY 162
G+ K+++ +L + + F D +DA+A+A AY +G
Sbjct: 116 Y-KGNASKEEVADILSKHLNIT-FNSDDESDAMAVAY--AYLVKNGL 158
>gi|307591332|ref|YP_003900131.1| Holliday junction resolvasome endonuclease subunit-like protein
[Cyanothece sp. PCC 7822]
gi|306986186|gb|ADN18065.1| Holliday junction resolvasome endonuclease subunit-like protein
[Cyanothece sp. PCC 7822]
Length = 388
Score = 78.4 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 25/144 (17%), Positives = 49/144 (34%), Gaps = 7/144 (4%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCF---VSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
R +GIDP L W +++ A + GTI + + + RL +L + L +++
Sbjct: 227 RTLGIDPALGTLRWAVLERADSECELPPLLDYGTITTTPKCPTSQRLSELEQDLVVLLRE 286
Query: 63 WRPEEAAVEQVFVNK----DAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGV 118
+ P E A+E F+N + + + L V K +
Sbjct: 287 FCPTEVAIEIPFLNTDSEINPKHLQNALEVIGVVDLVCYRECSIVPIRLYRNQWKCHVCD 346
Query: 119 GHGDKKQIHMMLKMLMPESFFKGK 142
+ + + L +
Sbjct: 347 FRASDEDVTDTIAGLFDLQVKPSE 370
>gi|307149815|ref|YP_003890858.1| Holliday junction resolvasome endonuclease subunit-like protein
[Cyanothece sp. PCC 7822]
gi|306986615|gb|ADN18493.1| Holliday junction resolvasome endonuclease subunit-like protein
[Cyanothece sp. PCC 7822]
Length = 391
Score = 77.6 bits (190), Expect = 5e-13, Method: Composition-based stats.
Identities = 27/144 (18%), Positives = 56/144 (38%), Gaps = 8/144 (5%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDN--LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
R +GIDP L W +++ D + GTI + ++ + RL +L + L +++K +
Sbjct: 231 RTLGIDPALGTLRWAVLEPDDDYDLPRLLDYGTITTTPKRPTSQRLSELEQDLVEILKEF 290
Query: 64 RPEEAAVEQVFVN----KDAVATLKLGQARAIAILSPAL-ARIPVSEYAPNTIKKAVIGV 118
P + A+E ++N ++ +A + L +I K +
Sbjct: 291 APSDVAIEIPYLNTESEQNPKNIQNALEAIGVVDLVCFRERQISPVRLYAGQWKSHICDY 350
Query: 119 GHGDKKQIHMMLKMLMPESFFKGK 142
D ++I + L +
Sbjct: 351 -RADTEEITDTIAGLFNLQVRPTE 373
>gi|307150953|ref|YP_003886337.1| Holliday junction resolvasome endonuclease subunit-like protein
[Cyanothece sp. PCC 7822]
gi|306981181|gb|ADN13062.1| Holliday junction resolvasome endonuclease subunit-like protein
[Cyanothece sp. PCC 7822]
Length = 170
Score = 77.6 bits (190), Expect = 6e-13, Method: Composition-based stats.
Identities = 31/154 (20%), Positives = 58/154 (37%), Gaps = 10/154 (6%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
IIG+DPGL ++D + I ++L + + T N+ E
Sbjct: 6 IIGVDPGLNYLAVSLLDSNK---KLMDFNCIEQEQEKNLENKYNNINRKFTKWFSNFNKE 62
Query: 67 EAAV--EQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK- 123
+ + E T K+ +A I I + + + + APN +K + G K
Sbjct: 63 KTIIILEFPVFMIKTENTKKVDKATEIIINAANKFDLKIHKIAPNHVKFLITGNSRISKV 122
Query: 124 ---KQIHMMLKMLMP-ESFFKGKDAADALAIAVC 153
+Q+ M+ + S + D++AI +
Sbjct: 123 GLFEQVKGMVSNIPSTLSAYTNNHITDSIAIGLT 156
>gi|254496521|ref|ZP_05109392.1| truncated crossover junction endodeoxyribonuclease ruvC [Legionella
drancourtii LLAP12]
gi|254354260|gb|EET12924.1| truncated crossover junction endodeoxyribonuclease ruvC [Legionella
drancourtii LLAP12]
Length = 118
Score = 77.2 bits (189), Expect = 8e-13, Method: Composition-based stats.
Identities = 42/101 (41%), Positives = 69/101 (68%)
Query: 60 IKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVG 119
+ ++ PEE A+EQVF++++ + LKLG AR +A+++ A R+ VSEY+ IK+ V+G G
Sbjct: 1 MDHYSPEEVAIEQVFMHQNPNSALKLGHARGVAMVAAASHRVNVSEYSARAIKQTVVGYG 60
Query: 120 HGDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
+K Q++ M+ L+ + DAADALAIA+CH++ +S
Sbjct: 61 AAEKTQVNHMVVSLLSLNSAPQSDAADALAIAICHSHMRHS 101
>gi|289706229|ref|ZP_06502592.1| crossover junction endodeoxyribonuclease [Micrococcus luteus SK58]
gi|289557068|gb|EFD50396.1| crossover junction endodeoxyribonuclease [Micrococcus luteus SK58]
Length = 200
Score = 76.8 bits (188), Expect = 9e-13, Method: Composition-based stats.
Identities = 33/116 (28%), Positives = 54/116 (46%)
Query: 27 DNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLG 86
V + SL RL ++ E ++ V+ RP+ AAVE++F N + L
Sbjct: 8 RRAALVHVEVAGTPPTASLDQRLLRIDEAVSAVLVAHRPDRAAVERMFANTNTPTVLGTA 67
Query: 87 QARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESFFKGK 142
QA +AI + A A +PV + P+ +K AV G G K+Q+ M+ ++
Sbjct: 68 QAAGVAIAAAARAGVPVGLHTPSEVKAAVTGHGDAGKEQVTTMVTRILRLDAPPRP 123
>gi|218680786|ref|ZP_03528683.1| Holliday junction resolvase [Rhizobium etli CIAT 894]
Length = 113
Score = 74.9 bits (183), Expect = 3e-12, Method: Composition-based stats.
Identities = 75/109 (68%), Positives = 90/109 (82%)
Query: 58 DVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIG 117
+V+ ++P+EAAVEQ FVNKDAVATLKLGQAR IA+L PA A + VSEYAPN +KKAVIG
Sbjct: 2 EVVHAYKPDEAAVEQTFVNKDAVATLKLGQARGIAMLVPARAGLHVSEYAPNAVKKAVIG 61
Query: 118 VGHGDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKIA 166
VGHG+K QIHMMLK+LMP+ FKG DAADALAIA+CHA++ S + A
Sbjct: 62 VGHGEKHQIHMMLKILMPKVEFKGDDAADALAIAICHAHNRGSNRMRQA 110
>gi|168069733|ref|XP_001786559.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162661008|gb|EDQ48630.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 225
Score = 74.1 bits (181), Expect = 6e-12, Method: Composition-based stats.
Identities = 28/154 (18%), Positives = 59/154 (38%), Gaps = 10/154 (6%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
R++G+D G ++V +++ ++ + + A R + ++ I RP
Sbjct: 55 RVLGLDLSSSP-GAAAIEVRNRTPYLIAASSVATTNDDTDAVRNVAVESFISQFIYENRP 113
Query: 66 EEAAV-EQVFVNKDAVATLKLGQARAIAILSPALARIPV----SEYAPNTIKKAVIGVGH 120
+ V E ++ AT + + A A + +P +KKAV G G
Sbjct: 114 FDIVVREDFTTGRNKRATQLVFGSWAAADRALLAFGYRAEDLDPPLSPTYVKKAVTGDGK 173
Query: 121 GDKKQIHMMLKMLMPESFFKG----KDAADALAI 150
+K ++ ++ + D +DA A+
Sbjct: 174 AEKSEVAKAVRKWLRLPDDYPFRAGYDDSDACAV 207
>gi|255928226|gb|ACU41843.1| gp6 [Mycobacterium phage Puhltonio]
Length = 184
Score = 72.2 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 30/165 (18%), Positives = 58/165 (35%), Gaps = 9/165 (5%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVS---------CVRQSLAFRLCQLYEGLT 57
++GID LR TG +V + G V+ ++++A R+ L + +
Sbjct: 4 VLGIDTSLRATGMCLVSLPPSVELGSWHGQCVTVGAPAATPDKSKRAMARRVKALVDQIQ 63
Query: 58 DVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIG 117
V RP+ +E + L I + + + +KK G
Sbjct: 64 WVFAEDRPDLVVMETLAFAAKGEGVWVLPWIFGKVIELCEGFDVELLCAGTSQVKKYATG 123
Query: 118 VGHGDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGY 162
G+ DK + + + P+ + ADA +A ++
Sbjct: 124 KGNADKDTVMLTVAKRWPDLAPANNNEADAACLAAIGCHYLGQPL 168
>gi|317130960|ref|YP_004097242.1| hypothetical protein Bcell_4284 [Bacillus cellulosilyticus DSM
2522]
gi|315475908|gb|ADU32511.1| hypothetical protein Bcell_4284 [Bacillus cellulosilyticus DSM
2522]
Length = 170
Score = 72.2 bits (176), Expect = 3e-11, Method: Composition-based stats.
Identities = 28/168 (16%), Positives = 63/168 (37%), Gaps = 8/168 (4%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
R++ +D + G+ I ++ + + GTI + R+ L L +++K++
Sbjct: 3 RLLSLDQSITSCGYSIFEIHNNQSELIDYGTIKLNTKLDYFERIICLENILNEMVKDYNI 62
Query: 66 EEAAVEQV--FVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKA---VIGVGH 120
+ A VE + KL I NT + V G+
Sbjct: 63 KLAIVEDIQKHRGTGLTTYKKLSSLLFFLQYFFYYRNIECQVVHVNTWRNGYRNVFGLPR 122
Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHA---NSGYYKI 165
+K ++ + ++ E +D++A+ + H +H +G + +
Sbjct: 123 INKDIVYEHIFNILGEPSDFDNHQSDSIAMGLFHCHHNLVLRNGLFNL 170
>gi|242310241|ref|ZP_04809396.1| crossover junction endodeoxyribonuclease ruvC [Helicobacter
pullorum MIT 98-5489]
gi|239523538|gb|EEQ63404.1| crossover junction endodeoxyribonuclease ruvC [Helicobacter
pullorum MIT 98-5489]
Length = 55
Score = 71.8 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 109 NTIKKAVIGVGHGDKKQIHMMLKMLMPES-FFKGKDAADALAIAVCHAYH 157
+KKA+ G G K+Q+ M+K L+ K D DA+AIA+ HA
Sbjct: 1 MQVKKALTGNGKAQKEQVAFMVKRLLGIKGEIKPLDITDAIAIAITHAQR 50
>gi|167464754|ref|ZP_02329843.1| crossover junction endodeoxyribonuclease RuvC [Paenibacillus
larvae subsp. larvae BRL-230010]
Length = 55
Score = 71.4 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 28/54 (51%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTD 58
+RI+GIDPG+ G+G +D L V G+I + RL Q+YE +
Sbjct: 1 MRILGIDPGIAIVGFGFIDKVSSRLVPVQYGSIQTEAYTDPGLRLKQVYEATGE 54
>gi|38638409|ref|NP_943784.1| gp6 [Mycobacterium phage PG1]
gi|109391852|ref|YP_655102.1| gp6 [Mycobacterium phage Orion]
gi|206600296|ref|YP_002241316.1| gp6 [Mycobacterium phage Chah]
gi|33334024|gb|AAQ12083.1| gp6 [Mycobacterium phage PG1]
gi|88910394|gb|ABD58322.1| gp6 [Mycobacterium phage Orion]
gi|206287384|gb|ACI12726.1| gp6 [Mycobacterium phage Chah]
gi|255927530|gb|ACU41152.1| gp6 [Mycobacterium phage Colbert]
gi|255928468|gb|ACU42083.1| gp6 [Mycobacterium phage UncleHowie]
gi|282721386|gb|ADA83834.1| gp6 [Mycobacterium phage Fang]
gi|282721489|gb|ADA83936.1| gp6 [Mycobacterium phage Scoot17C]
Length = 184
Score = 71.1 bits (173), Expect = 6e-11, Method: Composition-based stats.
Identities = 33/160 (20%), Positives = 59/160 (36%), Gaps = 11/160 (6%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVS---------CVRQSLAFRLCQLYEGLT 57
++GID LR TG +V + G V+ ++++A R+ L + +
Sbjct: 4 VLGIDTSLRATGMCLVSLPPSVELGSWHGQCVTVGAPAATPDKSKRAMARRVKALVDQIR 63
Query: 58 DVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIG 117
V + RP+ +E + L I + + + +KK G
Sbjct: 64 WVFDDDRPDLVVMETLAFAAKGEGVWVLPWIFGKVIELCEEFDVELLCAGTSQVKKYATG 123
Query: 118 VGHGDKKQIHMMLKMLMPESFFKGKDAAD-ALAIAV-CHA 155
G+ DK + + + PE + AD A A+ CH
Sbjct: 124 KGNADKDTVMLTVAKRWPELAPANNNEADSACLAAIGCHY 163
>gi|109521767|ref|YP_655689.1| gp9 [Mycobacterium phage Qyrzula]
gi|91980711|gb|ABE67429.1| gp9 [Mycobacterium phage Qyrzula]
Length = 230
Score = 70.7 bits (172), Expect = 7e-11, Method: Composition-based stats.
Identities = 30/160 (18%), Positives = 62/160 (38%), Gaps = 15/160 (9%)
Query: 6 RIIGIDPGLRRTGWG--IV-DVAGD---------NLCFVSSGTIVSCVRQSL---AFRLC 50
RI+GID L TG ++ DV + + G + + R+
Sbjct: 42 RILGIDTSLTGTGLARAVLPDVQRGVDMPREWPAQVDLATVGASKPKKGDTWLARSRRVH 101
Query: 51 QLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNT 110
++ +G+ + + + +E++ A + L + L IP+ +
Sbjct: 102 EVLDGIAGALDDGHYDAVGLEELAYGAKGDAVVVLHWLWGEVVNLVRLRDIPLYLVNVSG 161
Query: 111 IKKAVIGVGHGDKKQIHMMLKMLMPESFFKGKDAADALAI 150
+KK G G+ K ++ + + P+ K + +DALA+
Sbjct: 162 VKKFATGNGNAKKDEVMLAMANRFPQYTIKDNNQSDALAV 201
>gi|226305768|ref|YP_002765728.1| hypothetical protein RER_22810 [Rhodococcus erythropolis PR4]
gi|226184885|dbj|BAH32989.1| conserved hypothetical protein [Rhodococcus erythropolis PR4]
Length = 185
Score = 69.1 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 37/162 (22%), Positives = 62/162 (38%), Gaps = 10/162 (6%)
Query: 7 IIGIDPGLRRTGWGIVDVAG-----DNLCFVSSGTIVSCVRQ--SLAFRLCQLYEGLTDV 59
++G+DP L G I+ G + V+ G S + R+ +E +
Sbjct: 4 VVGLDPSLTAAGIAILGSPGTTDTPNVPKLVTVGVSGSESATLAERSTRIGDQFERIIRS 63
Query: 60 IKNWRPEEAAVEQVFVNKDAVATLKL--GQARAIAILSPALARIPVSEYAPNTIKKAVIG 117
+ + +EQ+ A A +IPV E T+KK G
Sbjct: 64 MPS-SVRLVVIEQLPFTAPKFAAKYQERCALYYRVTEFLARRKIPVVEVGATTLKKYATG 122
Query: 118 VGHGDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHAN 159
G DK+++ ++ L P + + + ADALA+A A H
Sbjct: 123 DGRADKREVVNAMRDLWPHAKVRNDNEADALALATIGAMHLG 164
>gi|315644187|ref|ZP_07897357.1| hypothetical protein PVOR_01530 [Paenibacillus vortex V453]
gi|315280562|gb|EFU43851.1| hypothetical protein PVOR_01530 [Paenibacillus vortex V453]
Length = 181
Score = 68.4 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 27/153 (17%), Positives = 63/153 (41%), Gaps = 5/153 (3%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+R + D L R G+ IV+ A D++ ++ G + + RL ++ + L +I+ +
Sbjct: 1 MRTLFCDQSLLRFGFSIVEKASDHVQIIAYGLLQLDAKLHYIERLGEIEKWLIRMIREYG 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKA-----VIGVG 119
E+ E++ ++ KL ++ I ++ + + ++ +
Sbjct: 61 IEQIVCEEIQFQRNVQTFRKLAVLQSAIEAVCYHNGISYAKPLQVHVWRTKGVRRILQLP 120
Query: 120 HGDKKQIHMMLKMLMPESFFKGKDAADALAIAV 152
G K+ + L + + ADAL +A+
Sbjct: 121 DGSKQTLFQYLNHYLNAPPAFDMNQADALGMAI 153
>gi|83648330|ref|YP_436765.1| Holliday junction resolvasome, endonuclease subunit [Hahella
chejuensis KCTC 2396]
gi|83636373|gb|ABC32340.1| Holliday junction resolvasome, endonuclease subunit [Hahella
chejuensis KCTC 2396]
Length = 159
Score = 67.2 bits (163), Expect = 6e-10, Method: Composition-based stats.
Identities = 31/149 (20%), Positives = 50/149 (33%), Gaps = 10/149 (6%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGT--IVSCVRQSLAFRLCQLYEGLTD-VIKNW 63
++ +D G R TGW A + SG + R + LT+
Sbjct: 5 VLALDLGTR-TGWA----AKGKDRAIVSGVMNFKPQRFEGGGMRFLRFKRWLTELKANLD 59
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
+ E+V + + G A IP TIK+ V G G+ K
Sbjct: 60 GIDALYFEEVRRHVSTDSAHAYGGFLATLTAWCEHHEIPYQGVPVGTIKRHVSGKGNASK 119
Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAV 152
+ + ++ + ADALAI +
Sbjct: 120 EDVIAAVRK--RGFNPSDDNEADALAIML 146
>gi|269103019|ref|ZP_06155716.1| crossover junction endodeoxyribonuclease RuvC [Photobacterium
damselae subsp. damselae CIP 102761]
gi|268162917|gb|EEZ41413.1| crossover junction endodeoxyribonuclease RuvC [Photobacterium
damselae subsp. damselae CIP 102761]
Length = 103
Score = 67.2 bits (163), Expect = 7e-10, Method: Composition-based stats.
Identities = 40/94 (42%), Positives = 59/94 (62%), Gaps = 1/94 (1%)
Query: 75 VNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLM 134
+ K+A + LKLGQAR AI++ A +PV+EYA IK+AV+G+G DK Q+ M+ ++
Sbjct: 1 MGKNASSALKLGQARGSAIVAAVNADLPVNEYAARLIKQAVVGIGSADKLQVQHMVCSML 60
Query: 135 PESFFKGKDAADALAIAVCHAYHANSGYYKIASQ 168
DAADALA+A+CHA+ + +A Q
Sbjct: 61 KLEGKPQADAADALAVAICHAHTNRT-LVAMAGQ 93
>gi|117925359|ref|YP_865976.1| bacteriophage-related protein [Magnetococcus sp. MC-1]
gi|117609115|gb|ABK44570.1| putative bacteriophage-related protein [Magnetococcus sp. MC-1]
Length = 166
Score = 67.2 bits (163), Expect = 7e-10, Method: Composition-based stats.
Identities = 29/146 (19%), Positives = 57/146 (39%), Gaps = 9/146 (6%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRL--CQLYEGLTDVIKNWR 64
++ +D G + GW + G ++SGT+ + + + + L ++
Sbjct: 17 VLALDLGTQ-MGWALYHPDGT----ITSGTVSFKLGRFEGGGMQWVRFKAWLAEMHFTSD 71
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
+ E+V + A+ G A +P +IKK+ G G+ K+
Sbjct: 72 VGQILFEEVRRHSGVGASHVYGGFLAHLTAWAEHHEVPYMGVPVGSIKKSATGKGNASKE 131
Query: 125 QIHMMLKMLMPESFFKGKDAADALAI 150
Q+ +K L + + ADALA+
Sbjct: 132 QVIHAMKRLGY--TPEDDNEADALAL 155
>gi|167462366|ref|ZP_02327455.1| crossover junction endodeoxyribonuclease RuvC [Paenibacillus larvae
subsp. larvae BRL-230010]
Length = 102
Score = 66.8 bits (162), Expect = 9e-10, Method: Composition-based stats.
Identities = 20/95 (21%), Positives = 43/95 (45%), Gaps = 6/95 (6%)
Query: 71 EQVFVNKDAVATLKLGQARAIAILSPALARIPVSEY-APNTIKKAVIGVGHGDKKQIHMM 129
E + K+ A + + V+++ +P+T+K+ V G G +K+ +
Sbjct: 6 EAWPPARSFENNDKVHGAWSAVDRALERFGQRVTDHLSPSTVKRLVTGSGKAEKEDVAES 65
Query: 130 LKMLMPESF---FKGKDAADALAIAVCHAYHANSG 161
++ L+ F+ D +DA A+A+ A+ +G
Sbjct: 66 VRKLLGLPPDYEFESDDESDACAVAL--AWLIQNG 98
>gi|117924540|ref|YP_865157.1| hypothetical protein Mmc1_1240 [Magnetococcus sp. MC-1]
gi|117608296|gb|ABK43751.1| conserved hypothetical protein [Magnetococcus sp. MC-1]
Length = 166
Score = 65.7 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 29/146 (19%), Positives = 56/146 (38%), Gaps = 9/146 (6%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRL--CQLYEGLTDVIKNWR 64
++ +D G + GW + G ++SGT+ + + + + L ++
Sbjct: 17 VLALDLGTQ-LGWALHHPDGT----ITSGTVSFKLGRFEGGGMQWVRFKAWLDEMHFTSD 71
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
+ E+V + A G A +P +IKK+ G G+ K+
Sbjct: 72 VGQILFEEVRRHIGTTAAHVYGGFLAHLTAWAEHHEVPYMGVPVGSIKKSATGKGNASKE 131
Query: 125 QIHMMLKMLMPESFFKGKDAADALAI 150
Q+ +K L + + ADALA+
Sbjct: 132 QVTHAMKRLGY--TPEDDNEADALAL 155
>gi|49475162|ref|YP_033203.1| hypothetical protein BH03610 [Bartonella henselae str. Houston-1]
gi|49237967|emb|CAF27172.1| hypothetical prophage protein [Bartonella henselae str. Houston-1]
Length = 158
Score = 65.7 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 38/154 (24%), Positives = 60/154 (38%), Gaps = 11/154 (7%)
Query: 1 MRKSIR-IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVR--QSLAFRLCQLYEGLT 57
M + R I+ +D G +TGW I G + SG + R + R + + LT
Sbjct: 1 MINNTRTILCLDLGS-KTGWAICGADG----HIFSGVMNFQPRRFEGGGMRYLRFKQWLT 55
Query: 58 DV-IKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVI 116
++ + R + E+V + A G A +IP TIKK
Sbjct: 56 EMKMTARRIDAVYFEEVRRHVGTDAAHVYGGLLATLTAWCEHHQIPYEGIPVGTIKKETT 115
Query: 117 GVGHGDKKQIHMMLKMLMPESFFKGKDAADALAI 150
G G+ K+++ + K + ADALAI
Sbjct: 116 GKGNASKEEMIKAVCA--KGHAPKDDNEADALAI 147
>gi|222435678|ref|YP_002564106.1| gp8 [Mycobacterium phage Phlyer]
gi|222088231|gb|ACM42172.1| gp8 [Mycobacterium phage Phlyer]
Length = 205
Score = 64.9 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 28/151 (18%), Positives = 46/151 (30%), Gaps = 5/151 (3%)
Query: 6 RIIGIDPGLRRTGWGIVDV--AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK-- 61
R++ +DP L TG VD+ + + + E + D ++
Sbjct: 27 RVLSVDPSLTSTGLCRVDLLHEPVRAEILLHAVKSKPTADKSYAAMSRRIEKIADTVRAA 86
Query: 62 NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSP-ALARIPVSEYAPNTIKKAVIGVGH 120
+ +E T + IPV P+ K G G+
Sbjct: 87 MDGCDLIVIEGPSFGSKGQHTHSRDWLWGKIFDAARVNWGIPVLVVTPSQRMKYATGKGN 146
Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAIA 151
K + P+ G D ADAL +A
Sbjct: 147 AQKDAVLAAAIKRWPDVEIDGNDQADALILA 177
>gi|49475479|ref|YP_033520.1| hypothetical protein BH06960 [Bartonella henselae str. Houston-1]
gi|49238285|emb|CAF27499.1| hypothetical genomic island protein [Bartonella henselae str.
Houston-1]
Length = 159
Score = 64.9 bits (157), Expect = 4e-09, Method: Composition-based stats.
Identities = 36/147 (24%), Positives = 57/147 (38%), Gaps = 10/147 (6%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVR--QSLAFRLCQLYEGLTDV-IKNW 63
I+ +D G +TGW I G + SG + R + R + + LT++ +
Sbjct: 8 ILCLDLGS-KTGWAICGADG----HIFSGVMNFQPRRFEGGGMRYLRFKQWLTEMKMTAR 62
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
R + E+V + A G A +IP TIKK G G+ K
Sbjct: 63 RIDAVYFEEVRRHVGTDAAHVYGGLLATLTAWCEHHQIPYEGIPVGTIKKETTGKGNASK 122
Query: 124 KQIHMMLKMLMPESFFKGKDAADALAI 150
+++ + K + ADALAI
Sbjct: 123 EEMIKAVCA--KGHAPKDDNEADALAI 147
>gi|326570548|gb|EGE20588.1| hypothetical protein E9U_04158 [Moraxella catarrhalis BC8]
Length = 173
Score = 64.9 bits (157), Expect = 4e-09, Method: Composition-based stats.
Identities = 36/170 (21%), Positives = 61/170 (35%), Gaps = 20/170 (11%)
Query: 2 RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLC------QLYEG 55
+ + IIG DP LR G+ I A + L F G I S L QLY
Sbjct: 3 NQPVTIIGFDPSLRNWGYCIATYADNKLTFHQGGVIHSRPNTKQKQNLQDLLSATQLYSQ 62
Query: 56 LTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPAL---ARIPVSEYAPNTIK 112
L ++ +P+ E ++ + A + ++ + P P +K
Sbjct: 63 LKQLMTTHKPDYIVAELPVGSQSSRAMVSYATCISLCSVLAFNDGIKTRPFINIPPQEVK 122
Query: 113 KAVIGVGHGDKKQI-HMMLKM-------LMPESFFKGKDAADALAIAVCH 154
K V G + K ++ +++ L K + DA+ +A H
Sbjct: 123 KTV-GKKNATKDEVIQWVVENYPDTKGWLDNLPKSKKEHICDAI-VA-TH 169
>gi|163797573|ref|ZP_02191523.1| hypothetical protein BAL199_00475 [alpha proteobacterium BAL199]
gi|159177172|gb|EDP61732.1| hypothetical protein BAL199_00475 [alpha proteobacterium BAL199]
Length = 162
Score = 64.9 bits (157), Expect = 4e-09, Method: Composition-based stats.
Identities = 33/146 (22%), Positives = 53/146 (36%), Gaps = 10/146 (6%)
Query: 8 IGIDPGLRRTGWGIVDVAGDNLCFVSSGTI--VSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
+ +D G TGW + ++SGT+ R + LT++ + P
Sbjct: 11 LALDLGTT-TGWALRAAD----SLITSGTVSFRPSRYDGGGMRYLRFTNWLTEIDRLSGP 65
Query: 66 EEAAV-EQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
A E+V + A G A L +P T K+ + G G+ K
Sbjct: 66 IAAIWFEEVRRHAGTDAAHVYGGLMATLTAWAELRGVPYEGVPVGTWKRCLCGKGNASKG 125
Query: 125 QIHMMLKMLMPESFFKGKDAADALAI 150
++ + + G D ADALAI
Sbjct: 126 EVTEAV--IAKGFSPAGSDEADALAI 149
>gi|319408868|emb|CBI82525.1| conserved hypothetical protein [Bartonella schoenbuchensis R1]
Length = 155
Score = 64.9 bits (157), Expect = 4e-09, Method: Composition-based stats.
Identities = 35/147 (23%), Positives = 58/147 (39%), Gaps = 10/147 (6%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTI--VSCVRQSLAFRLCQLYEGLTDV-IKNW 63
I+ +D G +TGW I G ++SGT+ + + R + + LT+
Sbjct: 8 ILCLDLG-TKTGWAISSEDGT----IASGTVNFSTRRFEGGGMRYLRFKQWLTETKAILE 62
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
+ E+V + A G AI + P TIKKA+ G G+ K
Sbjct: 63 HIDAVYFEEVRCHIGTDAAHVYGGLLAILTSWCEHHQTPYQGIPIATIKKAMTGRGNAPK 122
Query: 124 KQIHMMLKMLMPESFFKGKDAADALAI 150
++ ++ + + ADALAI
Sbjct: 123 TEMIKAVRA--KGHEPEDDNEADALAI 147
>gi|326567435|gb|EGE17550.1| hypothetical protein E9Q_06008 [Moraxella catarrhalis BC1]
gi|326573192|gb|EGE23161.1| hypothetical protein E9W_07071 [Moraxella catarrhalis CO72]
Length = 173
Score = 64.5 bits (156), Expect = 5e-09, Method: Composition-based stats.
Identities = 36/170 (21%), Positives = 59/170 (34%), Gaps = 20/170 (11%)
Query: 2 RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLC------QLYEG 55
+ + IIG DP LR G+ I A + L F G I S L QLY
Sbjct: 3 NQPVTIIGFDPSLRNWGYCIATYADNKLTFHQGGVIHSRPNTKQKQNLQDLLSATQLYSQ 62
Query: 56 LTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPAL---ARIPVSEYAPNTIK 112
L ++ +P+ E ++ + A + ++ + P P +K
Sbjct: 63 LKQLMTTHKPDYIVAELPVGSQSSRAMVSYATCISLCSVLAFNDGIKTRPFINIPPQEVK 122
Query: 113 KAVIGVGHGDKKQIHMMLKM--------LMPESFFKGKDAADALAIAVCH 154
K V G + K ++ + L K + DA+ +A H
Sbjct: 123 KTV-GKKNATKDEVIQWVAENYPDTKGWLDNLPKSKKEHICDAI-VA-TH 169
>gi|319408082|emb|CBI81735.1| conserved hypothetical protein [Bartonella schoenbuchensis R1]
Length = 155
Score = 64.5 bits (156), Expect = 5e-09, Method: Composition-based stats.
Identities = 36/147 (24%), Positives = 59/147 (40%), Gaps = 10/147 (6%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTI--VSCVRQSLAFRLCQLYEGLTDV-IKNW 63
I+ +D G +TGW I G ++SGT+ + + R + + LT+
Sbjct: 8 ILCLDLG-TKTGWAISSEDGT----IASGTVNFSTRRFEGGGMRYLRFKQWLTETKAILE 62
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
+ E+V + A G AI +IP TIKKA+ G G+ K
Sbjct: 63 HIDAVYFEEVRCHIGTDAAHVYGGLLAILTSWCEHHQIPYQGIPIATIKKAMTGRGNAPK 122
Query: 124 KQIHMMLKMLMPESFFKGKDAADALAI 150
++ ++ + + ADALAI
Sbjct: 123 TEMIKAVRA--KGHEPEDDNEADALAI 147
>gi|109521848|ref|YP_655285.1| gp8 [Mycobacterium phage Pipefish]
gi|88910579|gb|ABD58505.1| gp8 [Mycobacterium phage Pipefish]
Length = 216
Score = 64.1 bits (155), Expect = 6e-09, Method: Composition-based stats.
Identities = 27/168 (16%), Positives = 50/168 (29%), Gaps = 20/168 (11%)
Query: 2 RKSIRIIGIDPGLRRTGWGIVDVAGD-------------NLCFVSSGTIVSCVRQS---- 44
++ R++ +DP L TG VD+ +
Sbjct: 23 QRMTRVLSVDPSLTSTGLCRVDLIPRPTSSEPRGDNEPVRAEILLHAVKSKPTADKSYLA 82
Query: 45 LAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSP-ALARIPV 103
++ R+ ++ + + + + +E T + IPV
Sbjct: 83 MSRRIEKIADTVRAAMDGC--DLIVIEGPSFGSKGQHTHSRDWLWGKIFDAARVNWGIPV 140
Query: 104 SEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESFFKGKDAADALAIA 151
P+ K G G+ K + P+ G D ADAL +A
Sbjct: 141 LVVTPSQRMKYATGKGNAQKDAVLAAAIKRWPDVEIDGNDQADALILA 188
>gi|308172799|ref|YP_003919504.1| hypothetical protein BAMF_0908 [Bacillus amyloliquefaciens DSM 7]
gi|307605663|emb|CBI42034.1| hypothetical protein predicted by Glimmer/Critica [Bacillus
amyloliquefaciens DSM 7]
Length = 187
Score = 64.1 bits (155), Expect = 6e-09, Method: Composition-based stats.
Identities = 26/168 (15%), Positives = 54/168 (32%), Gaps = 17/168 (10%)
Query: 2 RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
K IR + D + G +++V + + +S A R + +
Sbjct: 4 AKPIRCLAFDTSMTCPGVAVIEVRNRKPTIKALSHVKPNSSRSHAHRAEVIEGWAMMFLD 63
Query: 62 NWRPEEA---AVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYA----------- 107
P + V + F K + + + A + + + +Y
Sbjct: 64 KNYPRDGFDYVVREDFAGKTSTSNYPVLAAWNACERATSRFELTFDKYWKTPNAKQPQLG 123
Query: 108 --PNTIKKAVIGVGHGDKKQIHMMLKMLMPES-FFKGKDAADALAIAV 152
+K V G G +K + ++ + + F D +DA AI +
Sbjct: 124 ISATRVKALVAGSGSAEKDAVKTAVRRMTGYTGEFANFDESDAAAIGL 171
>gi|117926122|ref|YP_866739.1| hypothetical protein Mmc1_2840 [Magnetococcus sp. MC-1]
gi|117609878|gb|ABK45333.1| conserved hypothetical protein [Magnetococcus sp. MC-1]
Length = 166
Score = 64.1 bits (155), Expect = 6e-09, Method: Composition-based stats.
Identities = 29/146 (19%), Positives = 56/146 (38%), Gaps = 9/146 (6%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRL--CQLYEGLTDVIKNWR 64
++ +D G + GW + G ++SGT+ + + + + L ++
Sbjct: 17 VLALDLGTQ-LGWALHHPDGT----ITSGTVSFKLGRFEGGGMQWVRFKAWLDEMHFTSD 71
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
+ E+V + A G A +P +IKK+ G G+ K+
Sbjct: 72 VGQILFEEVRRHIGTTAAHVYGGFLAHLTAWAEHHEVPYMGVPVGSIKKSATGKGNASKE 131
Query: 125 QIHMMLKMLMPESFFKGKDAADALAI 150
Q+ +K L + + ADALA+
Sbjct: 132 QVIHAMKHLGY--APEDDNEADALAL 155
>gi|319408675|emb|CBI82330.1| conserved hypothetical protein [Bartonella schoenbuchensis R1]
Length = 156
Score = 63.7 bits (154), Expect = 9e-09, Method: Composition-based stats.
Identities = 36/147 (24%), Positives = 59/147 (40%), Gaps = 10/147 (6%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTI--VSCVRQSLAFRLCQLYEGLTDV-IKNW 63
I+ +D G +TGW I G ++SGT+ + + R + + LT+
Sbjct: 8 ILCLDLG-TKTGWAISSEDGT----IASGTVNFSTRRFEGGGMRYLRFKQWLTETKAILE 62
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
+ E+V + A G AI +IP TIKKA+ G G+ K
Sbjct: 63 HIDAVYFEEVRCHIGTDAAHVYGGLLAILTSWCEHHQIPYQGIPIATIKKAMTGRGNAPK 122
Query: 124 KQIHMMLKMLMPESFFKGKDAADALAI 150
++ ++ + + ADALAI
Sbjct: 123 TEMIKAVRA--KGHEPEDDNEADALAI 147
>gi|117926047|ref|YP_866664.1| bacteriophage-related protein [Magnetococcus sp. MC-1]
gi|117609803|gb|ABK45258.1| putative bacteriophage-related protein [Magnetococcus sp. MC-1]
Length = 166
Score = 63.0 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 29/149 (19%), Positives = 56/149 (37%), Gaps = 9/149 (6%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRL--CQLYEGLTDVIKNWR 64
++ +D G + GW + G ++SGT+ + + + + L ++
Sbjct: 17 VLALDLGTQ-MGWALRHPDGT----ITSGTVSFKLGRFEGGGMQWVRFKAWLDEMHFTSD 71
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
+ E+V + A G A +P +IKK+ G G+ K+
Sbjct: 72 VGQILFEEVRRHIGTTAAHVYGGFLAHLTAWAEHHEVPYMGVPVGSIKKSAAGKGNASKE 131
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVC 153
Q+ +K L + +DALA+ C
Sbjct: 132 QVIHAMKRLGHN--PADDNESDALALLHC 158
>gi|240850005|ref|YP_002971398.1| phage related protein [Bartonella grahamii as4aup]
gi|240267128|gb|ACS50716.1| phage related protein [Bartonella grahamii as4aup]
Length = 158
Score = 62.6 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 36/148 (24%), Positives = 55/148 (37%), Gaps = 10/148 (6%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGT--IVSCVRQSLAFRLCQLYEGLTD-VIKN 62
I+ +D G +TGW I G ++S T S + R + LT+
Sbjct: 7 IILCLDLG-TKTGWAICGANG----HITSDTEDFQSRRFEGGGMRYLRFKRWLTELKRSV 61
Query: 63 WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
+ E+V + A+ G A +IP TIKKA G G+
Sbjct: 62 DEIDAVYFEEVRRHVGTDASHIYGGFLATLTAWCEHHQIPYEGIPVGTIKKATTGKGNAS 121
Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAI 150
K+++ + K + ADALAI
Sbjct: 122 KEEMIKAICS--KGHTPKDDNEADALAI 147
>gi|321272265|gb|ADW80150.1| putative holliday junction resolvasome [Wolbachia endosymbiont
wVitA of Nasonia vitripennis phage WOVitA1]
gi|321272322|gb|ADW80204.1| putative holliday junction resolvasome [Wolbachia endosymbiont
wVitB of Nasonia vitripennis phage WOVitB]
Length = 155
Score = 62.6 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/154 (19%), Positives = 56/154 (36%), Gaps = 21/154 (13%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRL-------CQLYEGLT 57
+ I+ +D G ++TGW I ++ G I S + R + L
Sbjct: 1 MSILTLDLG-KQTGWAI----------LTDGVIESGSKSFHGSRFSGGGMHFLKFRSWLN 49
Query: 58 DVIKNW-RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVI 116
++ + + E E+V + A G A+ +P TIK+ +
Sbjct: 50 EMKEKFSNIEAVYFEEVRRHLGTDAAHCYGGFLAVLSAWCEEHHVPYQGVNVKTIKRFIT 109
Query: 117 GVGHGDKKQIHMMLKMLMPESFFKGKDAADALAI 150
G G+ K ++ +K + + DALA+
Sbjct: 110 GKGNASKSEVIEAVKK--KGVSPRDDNEGDALAL 141
>gi|163867626|ref|YP_001608825.1| hypothetical protein Btr_0369 [Bartonella tribocorum CIP 105476]
gi|161017272|emb|CAK00830.1| phage-related conserved hypothetical protein [Bartonella tribocorum
CIP 105476]
Length = 159
Score = 62.6 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 39/148 (26%), Positives = 60/148 (40%), Gaps = 12/148 (8%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGT--IVSCVRQSLAFRLCQLYEGLTD-VIKNW 63
I+ +D G +TGW + D G F++S T S + R + + LT+ +
Sbjct: 8 ILCLDLG-TKTGWALRDADG----FITSDTEHFQSRRFEGGGMRYLRFKKWLTELKRSVY 62
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
+ E+V + A+ G A +IP TIKKA G G+ K
Sbjct: 63 EIDAVYFEEVRRHVGTDASHVYGGFLATLTAWCEHHQIPYEGIPVGTIKKATTGKGNASK 122
Query: 124 KQIHMMLKMLMPESFFKGKD-AADALAI 150
+ M+K + + D ADALAI
Sbjct: 123 E---EMIKAMRAKGHAPCDDNEADALAI 147
>gi|169838587|ref|ZP_02871775.1| hypothetical protein cdivTM_16026 [candidate division TM7
single-cell isolate TM7a]
Length = 42
Score = 62.6 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAG-DNLCFVSSGTIVSCVRQSL 45
+RI+GIDPG G+G++D VS+G + + L
Sbjct: 1 MRILGIDPGTGILGFGVIDCVNYGKYKMVSAGVVRTPPHTPL 42
>gi|288817848|ref|YP_003432195.1| hypothetical protein HTH_0531 [Hydrogenobacter thermophilus TK-6]
gi|288787247|dbj|BAI68994.1| hypothetical protein HTH_0531 [Hydrogenobacter thermophilus TK-6]
gi|308751445|gb|ADO44928.1| hypothetical protein Hydth_0528 [Hydrogenobacter thermophilus TK-6]
Length = 154
Score = 62.2 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 24/108 (22%), Positives = 43/108 (39%), Gaps = 7/108 (6%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
RI+ IDPG G+ + G+ + GT+ ++ RL ++Y + ++I+ P
Sbjct: 3 RIMTIDPGYSALGYAV----GEENKLIEYGTVYFKGKEET--RLTEIYLKIKELIQRHNP 56
Query: 66 EEAAVEQVFVNKD-AVATLKLGQARAIAILSPALARIPVSEYAPNTIK 112
+ +E V KD K I +I + N+ K
Sbjct: 57 DTVLIEDYRVYKDGYKGKHKTAIVVGIICAIAYEHKIKPTFVFHNSWK 104
>gi|319406618|emb|CBI80260.1| conserved hypothetical protein [Bartonella sp. 1-1C]
Length = 159
Score = 62.2 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 35/147 (23%), Positives = 56/147 (38%), Gaps = 10/147 (6%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVR--QSLAFRLCQLYEGLTDV-IKNW 63
I+ D G +TGW I G + SG + R + R + + L ++ +
Sbjct: 8 ILCFDLG-TKTGWAICGADG----HIISGVMNFQPRRFEGGGMRYLRFKQWLNEIKLTAG 62
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
R + E+V + A G A +IP +TIKK G G+ K
Sbjct: 63 RIDAVYFEEVRRHIGTDAAHVYGGLLATLTAWCEYYQIPYEGIPVSTIKKETTGKGNASK 122
Query: 124 KQIHMMLKMLMPESFFKGKDAADALAI 150
+++ + K + ADALAI
Sbjct: 123 EEMIKAVCA--KGHAPKDDNEADALAI 147
>gi|163868155|ref|YP_001609359.1| hypothetical protein Btr_0969 [Bartonella tribocorum CIP 105476]
gi|161017806|emb|CAK01364.1| phage-related conserved hypothetical protein [Bartonella tribocorum
CIP 105476]
Length = 158
Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 36/154 (23%), Positives = 62/154 (40%), Gaps = 11/154 (7%)
Query: 1 MRKSIR-IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVR--QSLAFRLCQLYEGLT 57
M + R I+ +D G +TGW I G + SG + R + R + L+
Sbjct: 1 MINNTRTILCLDLGS-KTGWAICGADG----HIVSGVMNFQPRRFEGGGMRYLRFKRCLS 55
Query: 58 DVIKNW-RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVI 116
++ + + E+V + A+ G A +IP TIKKA
Sbjct: 56 EIKQAVGSIDAVYFEEVRRHVGTDASHVYGGFLATLTAWCEHHQIPYEGIPVCTIKKATT 115
Query: 117 GVGHGDKKQIHMMLKMLMPESFFKGKDAADALAI 150
G G+ K+++ +++ + + ADALAI
Sbjct: 116 GKGNASKEEMIKVMRA--KGHAPEDDNEADALAI 147
>gi|309781006|ref|ZP_07675745.1| holliday junction resolvasome, endonuclease subunit [Ralstonia sp.
5_7_47FAA]
gi|330824597|ref|YP_004387900.1| hypothetical protein Alide2_2009 [Alicycliphilus denitrificans
K601]
gi|308920309|gb|EFP65967.1| holliday junction resolvasome, endonuclease subunit [Ralstonia sp.
5_7_47FAA]
gi|329309969|gb|AEB84384.1| hypothetical protein Alide2_2009 [Alicycliphilus denitrificans
K601]
Length = 158
Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 32/155 (20%), Positives = 56/155 (36%), Gaps = 13/155 (8%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGT--IVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
I+ +D G TGW + G ++SG+ + R + L+++ ++
Sbjct: 5 ILALDLGTT-TGWALRGSDG----HITSGSERFRPQRFEGGGMRFLRFKRWLSEIKQSCD 59
Query: 65 -PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
+ E+V + A G A +IP TIKK G G+ K
Sbjct: 60 GIDCLHFEEVRRHVSTDAAHAYGGFLATLTAWCEHHQIPYQGVPVGTIKKHATGKGNAGK 119
Query: 124 KQIHMMLKMLMPESFFKGKDAADALAI---AVCHA 155
+ + + + ADALA+ A+ H
Sbjct: 120 EDVIASVTA--RGHAPVDDNEADALALLHWAIQHH 152
>gi|17547947|ref|NP_521349.1| bacteriophage-related protein [Ralstonia solanacearum GMI1000]
gi|17430253|emb|CAD17016.1| putative bacteriophage-related protein [Ralstonia solanacearum
GMI1000]
Length = 154
Score = 61.0 bits (147), Expect = 6e-08, Method: Composition-based stats.
Identities = 33/153 (21%), Positives = 52/153 (33%), Gaps = 12/153 (7%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGT--IVSCVRQSLAFRLCQLYEGLTD 58
M + I+ +D G +TGW + + G ++SGT + R + L +
Sbjct: 1 MTTT--ILALDLG-TKTGWALQYLDGS----ITSGTQDFKPKRFEGGGMRFLRFKRWLNE 53
Query: 59 VIKNWR-PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIG 117
+ + E+V + A G IP TIKK G
Sbjct: 54 LKLSCSDINVVYFEEVRRHAGVDAAHIYGGLLGHLSAWCEHHNIPYIGVPVGTIKKHATG 113
Query: 118 VGHGDKKQIHMMLKMLMPESFFKGKDAADALAI 150
G+ K +I + + ADALAI
Sbjct: 114 KGNASKDEIIASVSK--RGHEPTDDNEADALAI 144
>gi|163867791|ref|YP_001608995.1| hypothetical protein Btr_0550 [Bartonella tribocorum CIP 105476]
gi|161017442|emb|CAK01000.1| phage-related conserved hypothetical protein [Bartonella tribocorum
CIP 105476]
Length = 159
Score = 60.7 bits (146), Expect = 7e-08, Method: Composition-based stats.
Identities = 38/148 (25%), Positives = 59/148 (39%), Gaps = 12/148 (8%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVR--QSLAFRLCQLYEGLTD-VIKNW 63
I+ +D G +TGW + D G F++S T R + R + + L++
Sbjct: 8 ILCLDLG-TKTGWALCDADG----FITSDTEHFQSRRFEGGGMRYLRFKKWLSELKRSVD 62
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
+ E+V + A+ G A +IP TIKKA G G+ K
Sbjct: 63 EIDAVYFEEVRRHVGTDASHVYGGFLATLTAWCEHHQIPYEGIPVGTIKKATTGKGNASK 122
Query: 124 KQIHMMLKMLMPESFFKGKD-AADALAI 150
+ M+K + + D ADALAI
Sbjct: 123 E---EMIKTMRAKGHAPCDDNEADALAI 147
>gi|117925885|ref|YP_866502.1| hypothetical protein Mmc1_2600 [Magnetococcus sp. MC-1]
gi|117609641|gb|ABK45096.1| conserved hypothetical protein [Magnetococcus sp. MC-1]
Length = 166
Score = 60.7 bits (146), Expect = 8e-08, Method: Composition-based stats.
Identities = 30/149 (20%), Positives = 56/149 (37%), Gaps = 9/149 (6%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRL--CQLYEGLTDVIKNWR 64
++ +D G + GW + G ++SGT+ + + + + L ++
Sbjct: 17 VLALDLGTQ-MGWALYHPDGT----ITSGTVSFKLGRFEGGGMQWVRFKAWLAEMHFTSD 71
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
+ E+V + A+ G A + +P TIKK G G+ K
Sbjct: 72 VGQILFEEVRRHSGVGASHVYGGFLAHLTAWAESSEVPYQGVPVGTIKKHATGKGNASKA 131
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVC 153
Q+ +K L + +DALA+ C
Sbjct: 132 QVIHAMKRLGHN--PADDNESDALALLHC 158
>gi|189043138|ref|YP_001936079.1| RuvC [Mycobacterium phage BPs]
gi|239590060|ref|YP_002941909.1| gp51 [Mycobacterium phage Angel]
gi|171909253|gb|ACB58210.1| RuvC [Mycobacterium phage BPs]
gi|238890592|gb|ACR77581.1| gp51 [Mycobacterium phage Angel]
gi|255927895|gb|ACU41515.1| gp51 [Mycobacterium phage Hope]
Length = 196
Score = 60.3 bits (145), Expect = 9e-08, Method: Composition-based stats.
Identities = 26/164 (15%), Positives = 46/164 (28%), Gaps = 20/164 (12%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLY-----EGLTDV 59
+ +GIDP L TG ++ V G + G + + E
Sbjct: 1 MIAVGIDPSLTSTGVAVL-VDGKLAHYGRYG--RPGQNGASYTTRSRRVRRMIREVTKAA 57
Query: 60 IKNWRPEEAAVEQVFVN-KDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGV 118
+ RP+ +E+ + + +P +T K V G
Sbjct: 58 LTAGRPDVFVIEEHPYAVGNQGNEFDRAAIWHGIYGNLDAHEVPGVVVNNSTGKAWVTGA 117
Query: 119 GHGDKKQIHMMLKMLMPESFFK-----------GKDAADALAIA 151
G K+ + ++ D ADA+ A
Sbjct: 118 GRASKEDVIAVIDDWYAGQIDPPLAKWRKTVDHPDDVADAIGYA 161
>gi|117924605|ref|YP_865222.1| hypothetical protein Mmc1_1305 [Magnetococcus sp. MC-1]
gi|117608361|gb|ABK43816.1| conserved hypothetical protein [Magnetococcus sp. MC-1]
Length = 166
Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 30/160 (18%), Positives = 58/160 (36%), Gaps = 12/160 (7%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRL--CQLYEGLTDVIKNWR 64
++ +D G + GW + G ++SGT+ + + + + L ++
Sbjct: 17 VLALDLGTQ-MGWALYHPDGT----ITSGTVSFKLGRFEGGGMQWVRFKAWLAEMHFTSD 71
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
+ E+V + A+ G A + +P TIKK G G+ K
Sbjct: 72 VGQILFEEVRRHSGVGASHVYGGFLAHLTAWAESSEVPYQGVPVGTIKKHATGKGNASKA 131
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYK 164
Q+ +K L + +DALA+ + G +
Sbjct: 132 QVIHAMKRLGHN--PADDNESDALALL---HWQIGQGGAR 166
>gi|240850489|ref|YP_002971888.1| phage related protein [Bartonella grahamii as4aup]
gi|240267612|gb|ACS51200.1| phage related protein [Bartonella grahamii as4aup]
Length = 160
Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 36/148 (24%), Positives = 54/148 (36%), Gaps = 10/148 (6%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGT--IVSCVRQSLAFRLCQLYEGLTD-VIKN 62
I+ +D G +TGW I G ++S T S + R + LT+
Sbjct: 7 IILCLDLG-TKTGWAICGADG----HITSDTEDFQSRRFEGGGMRYLRFKRWLTELKRSV 61
Query: 63 WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
+ E+V + A+ G A +IP TIKKA G G+
Sbjct: 62 DEIDAVYFEEVRRHVGTDASHIYGGFLATLTAWCEHHQIPYEGIPVGTIKKATTGKGNAS 121
Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAI 150
K ++ + K + ADALAI
Sbjct: 122 KVKMIKAICA--KGHVPKDDNEADALAI 147
>gi|109392339|ref|YP_655569.1| gp52 [Mycobacterium phage Halo]
gi|91980589|gb|ABE67309.1| RuvC [Mycobacterium phage Halo]
Length = 196
Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/164 (15%), Positives = 46/164 (28%), Gaps = 20/164 (12%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLY-----EGLTDV 59
+ +GIDP L TG ++ V G + G + + E
Sbjct: 1 MIAVGIDPSLTSTGVAVL-VDGKLAHYGRYG--RPGQNGASYTTRSRRVRRMIREVTKAA 57
Query: 60 IKNWRPEEAAVEQVFVN-KDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGV 118
+ RP+ +E+ + + +P +T K V G
Sbjct: 58 LTAGRPDVFVIEEHPYAVGNQGNEFDRAAIWHGIYGNLDAHEVPGVVVNNSTGKAWVTGA 117
Query: 119 GHGDKKQIHMMLKMLMPESFFK-----------GKDAADALAIA 151
G K+ + ++ D ADA+ A
Sbjct: 118 GRASKEDVIAVIDDWYAGQIDPPLAKWRKTVDHPDDVADAIGYA 161
>gi|134297350|ref|YP_001121085.1| hypothetical protein Bcep1808_3260 [Burkholderia vietnamiensis G4]
gi|134140507|gb|ABO56250.1| conserved hypothetical protein [Burkholderia vietnamiensis G4]
Length = 157
Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 30/150 (20%), Positives = 55/150 (36%), Gaps = 10/150 (6%)
Query: 4 SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGT--IVSCVRQSLAFRLCQLYEGLTDVIK 61
++ I +D G + TGW + G ++SG+ + R + LTD+ +
Sbjct: 3 TMTIFALDLGTQ-TGWALTSRDGS----ITSGSQSFKPQRFEGGGMRFLRFKRWLTDIKQ 57
Query: 62 NWR-PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
++ E+V + A G +IP TIKK G G+
Sbjct: 58 CNDGIDQVVFEEVRRHVGVDAAHAYGGFMGQLTAWCEHHQIPYQGIPVGTIKKHATGKGN 117
Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAI 150
K ++ ++ + ADA+A+
Sbjct: 118 ASKDEMVASVRA--RGHAPTDDNEADAIAL 145
>gi|257453062|ref|ZP_05618361.1| hypothetical protein F3_08386 [Fusobacterium sp. 3_1_5R]
gi|317059599|ref|ZP_07924084.1| predicted protein [Fusobacterium sp. 3_1_5R]
gi|313685275|gb|EFS22110.1| predicted protein [Fusobacterium sp. 3_1_5R]
Length = 251
Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/143 (18%), Positives = 49/143 (34%), Gaps = 7/143 (4%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
++ ID TG V TI + R ++ E L ++K + +
Sbjct: 104 VLAIDLSTTSTGIA----YSQKGEIVRWKTIK-AEDKDFRKRGAKIIEELVKILKKGKID 158
Query: 67 EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
+E V++ ++ L + R + I + P K + GV ++Q
Sbjct: 159 FVVLEDVYLGLNSSVLTMLSEVRGMLTYPLVKLNIDILIVPPVLWKHRIEGVPFHREEQK 218
Query: 127 HMMLKMLM--PESFFKGKDAADA 147
M+K + D ADA
Sbjct: 219 EFMMKKFLEYTGENPDSDDVADA 241
>gi|302035480|ref|YP_003795802.1| putative polynucleotidyl transferase [Candidatus Nitrospira
defluvii]
gi|300603544|emb|CBK39874.1| putative Polynucleotidyl transferase (phage related) [Candidatus
Nitrospira defluvii]
Length = 154
Score = 59.5 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/151 (18%), Positives = 48/151 (31%), Gaps = 8/151 (5%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDV- 59
M + I+ +D G TGW + + G + R + L ++
Sbjct: 1 MNTT--ILALDLG-THTGWALQHLDGTTTSGTEH--FKPQRFEGGGMRFLRFKRWLNELL 55
Query: 60 IKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVG 119
+ E+V + A G IP TIKK G G
Sbjct: 56 STSNHINAVFFEEVRRHAGVDAAHAYGGFMGHLTAWCEHHNIPYQGVPVGTIKKHATGKG 115
Query: 120 HGDKKQIHMMLKMLMPESFFKGKDAADALAI 150
+ K+++ ++ + ADALA+
Sbjct: 116 NAGKEEMIASVRK--RGHAPADDNEADALAL 144
>gi|163869078|ref|YP_001610312.1| hypothetical protein Btr_2296 [Bartonella tribocorum CIP 105476]
gi|161018759|emb|CAK02317.1| phage-related conserved hypothetical protein [Bartonella tribocorum
CIP 105476]
Length = 155
Score = 59.5 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 36/148 (24%), Positives = 56/148 (37%), Gaps = 12/148 (8%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVR--QSLAFRLCQLYEGLTDV-IKNW 63
I+ D G + GW I G+ + SGT+ R + R + + L ++
Sbjct: 5 ILCFDLG-TKMGWAI--RGGNG--HIFSGTMSLQPRRFEGGGMRYLRFKQWLNEIKHTAG 59
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
+ E+V + A G A IP +TIKKA G G+ K
Sbjct: 60 DIDAVYFEEVRRHVGTDAAHVYGGLLAALTAWCEDHEIPYEGIPVSTIKKATTGKGNASK 119
Query: 124 KQIHMMLKMLMPESFFKGKD-AADALAI 150
+ M++ + + D ADALAI
Sbjct: 120 E---EMIEAMRSKGHVPCDDNEADALAI 144
>gi|213019358|ref|ZP_03335164.1| putative phage related protein [Wolbachia endosymbiont of Culex
quinquefasciatus JHB]
gi|212994780|gb|EEB55422.1| putative phage related protein [Wolbachia endosymbiont of Culex
quinquefasciatus JHB]
Length = 168
Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/150 (18%), Positives = 50/150 (33%), Gaps = 17/150 (11%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ I+ +D G ++TGW I ++ G I S R +
Sbjct: 15 MSILTLDLG-KQTGWAI----------LTDGVIESGSESFHTSRFSGGGMCFLNFRNWLN 63
Query: 65 ----PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
E+V + A G A+ +P TIK+ + G G+
Sbjct: 64 SLKEISVVYFEEVRRHLGTDAAHCYGGFLAVLSAWCEEHHVPYKGVNVKTIKRFIAGNGN 123
Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAI 150
K ++ +K + + +DALA+
Sbjct: 124 ASKSEVIEAVKE--KGFLPRDDNESDALAL 151
>gi|190571684|ref|YP_001976042.1| putative phage related protein [Wolbachia endosymbiont of Culex
quinquefasciatus Pel]
gi|213019340|ref|ZP_03335147.1| putative phage related protein [Wolbachia endosymbiont of Culex
quinquefasciatus JHB]
gi|190357956|emb|CAQ55419.1| putative phage related protein [Wolbachia endosymbiont of Culex
quinquefasciatus Pel]
gi|212995449|gb|EEB56090.1| putative phage related protein [Wolbachia endosymbiont of Culex
quinquefasciatus JHB]
Length = 154
Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/150 (18%), Positives = 50/150 (33%), Gaps = 17/150 (11%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ I+ +D G ++TGW I ++ G I S R +
Sbjct: 1 MSILTLDLG-KQTGWAI----------LTDGVIESGSESFHTSRFSGGGMCFLNFRNWLN 49
Query: 65 ----PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
E+V + A G A+ +P TIK+ + G G+
Sbjct: 50 SLKEISVVYFEEVRRHLGTDAAHCYGGFLAVLSAWCEEHHVPYKGVNVKTIKRFIAGNGN 109
Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAI 150
K ++ +K + + +DALA+
Sbjct: 110 ASKSEVIEAVKE--KGFLPRDDNESDALAL 137
>gi|300689922|ref|YP_003750917.1| bacteriophage-related protein [Ralstonia solanacearum PSI07]
gi|299076982|emb|CBM09938.1| putative bacteriophage-related protein [Ralstonia solanacearum
PSI07]
Length = 154
Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 33/153 (21%), Positives = 51/153 (33%), Gaps = 12/153 (7%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGT--IVSCVRQSLAFRLCQLYEGLTD 58
M + I+ +D G +TGW + + G ++SGT + R + L
Sbjct: 1 MTTT--ILALDLG-TKTGWALQYLDGS----IASGTQNFKPQRFEGGGMRFLRFKRWLNG 53
Query: 59 VIKNWR-PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIG 117
+ + E+V + A G IP TIKK G
Sbjct: 54 LKLSCSDINVVYFEEVRRHAGVDAAHIYGGLLGHLSAWCEHHNIPYIGVPVGTIKKHATG 113
Query: 118 VGHGDKKQIHMMLKMLMPESFFKGKDAADALAI 150
G+ K +I + + ADALAI
Sbjct: 114 KGNASKDEIIASVSK--RGHKPTDDNEADALAI 144
>gi|190570855|ref|YP_001975213.1| putative phage related protein [Wolbachia endosymbiont of Culex
quinquefasciatus Pel]
gi|190357127|emb|CAQ54538.1| putative phage related protein [Wolbachia endosymbiont of Culex
quinquefasciatus Pel]
Length = 154
Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/150 (18%), Positives = 51/150 (34%), Gaps = 17/150 (11%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ I+ +D G ++TGW I ++ G I S R +
Sbjct: 1 MSILTLDLG-KQTGWAI----------LTDGVIESGSESFHTSRFSGGGMCFLNFRNWLN 49
Query: 65 ----PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
+E+V + A G A+ +P TIK+ + G G+
Sbjct: 50 SLKEISVVYLEEVRRHLGTDAAHCYGGFLAVLSAWCEEHHVPYKGVNVKTIKRFIAGNGN 109
Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAI 150
K ++ +K + + +DALA+
Sbjct: 110 ASKSEVIEAVKE--KGFLPRDDNESDALAL 137
>gi|322384973|ref|ZP_08058626.1| hypothetical protein PL1_2911 [Paenibacillus larvae subsp. larvae
B-3650]
gi|321150182|gb|EFX43692.1| hypothetical protein PL1_2911 [Paenibacillus larvae subsp. larvae
B-3650]
Length = 196
Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/125 (20%), Positives = 53/125 (42%), Gaps = 11/125 (8%)
Query: 4 SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
S+R +GIDP +TG+ +D G+ + + + + R+ L + + D I
Sbjct: 11 SMRFVGIDP-STKTGFVALDQFGNVIKAKEL----TGINRPDPIRMITLVDEIMDHI--- 62
Query: 64 RP-EEAAVEQV-FVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
+P ++ +E K G I + + ++ +E P+ +KK G G+
Sbjct: 63 QPGDQVFIEGFAHAAKGNYVGQMFGIGWGIRM-ALTRRKVQYTEVTPSQLKKFASGKGNA 121
Query: 122 DKKQI 126
K+ +
Sbjct: 122 KKEDL 126
>gi|315122904|ref|YP_004063393.1| hypothetical protein CKC_05800 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313496306|gb|ADR52905.1| hypothetical protein CKC_05800 [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 145
Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/148 (20%), Positives = 55/148 (37%), Gaps = 13/148 (8%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVR--QSLAFRLCQLYEGLTDVIKN 62
+ I+ +D G + G+ + + SG + + R + L +
Sbjct: 1 MGILALDLGS-KMGFAV-----QKDNQIFSGVVKFENGRFEGGGMRFLKFQNWLDGLKG- 53
Query: 63 WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
E+V + A+ G +I +IP S TIKK + G G+ +
Sbjct: 54 --ISVVWFEEVRRHLGVDASHAYGGFLSILSSWCERNKIPYSGIPVQTIKKHITGKGNAN 111
Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAI 150
K + + +K L + + ADALA+
Sbjct: 112 KALVILAVKGLGFK--PIDDNEADALAL 137
>gi|261736026|ref|YP_003257368.1| hypothetical protein pZL12-4 [Streptomyces sp. ZL12]
gi|261349149|gb|ACX71081.1| hypothetical protein pZL12-4 [Streptomyces sp. ZL12]
Length = 201
Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/150 (18%), Positives = 48/150 (32%), Gaps = 15/150 (10%)
Query: 7 IIGIDPGLRRTGWG-------IVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDV 59
++G+DP L TG ++ G + RL + + V
Sbjct: 19 VVGLDPSLTATGIASTRGWCEVIGYRKARAK--DPGI----TQLPHTERLTAMRNLVDQV 72
Query: 60 IKNW-RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGV 118
+ P+ +E V++ + G ++P+ +PN G
Sbjct: 73 VTAIGHPDLVVIELPAVSRSGGGAHERGWFWWQLYNQLHNTQLPIGLLSPNQRALYATGK 132
Query: 119 GHGDKKQIHMMLKMLMPESFFKGKD-AADA 147
G+ K + + P G D AADA
Sbjct: 133 GNAAKGAVIDQVSRRFPAWSTDGNDNAADA 162
>gi|285019152|ref|YP_003376863.1| bacteriophage-related protein [Xanthomonas albilineans GPE PC73]
gi|283474370|emb|CBA16871.1| putative bacteriophage-related protein [Xanthomonas albilineans]
Length = 154
Score = 58.7 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 33/147 (22%), Positives = 50/147 (34%), Gaps = 10/147 (6%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGT--IVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
I+ +D G R TGW + G ++SGT + R + L +V+
Sbjct: 5 ILALDLGTR-TGWALQHSDGT----ITSGTEPFTPQRFEGGGMRFLRFKRWLNEVLSTAN 59
Query: 65 PEEAA-VEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
P E+V + A G +IP TIKK G G+ K
Sbjct: 60 PIHTVYFEEVRRHAGVDAAHAYGGFMGHLTAWCEHHQIPYQGVPVGTIKKHATGKGNAGK 119
Query: 124 KQIHMMLKMLMPESFFKGKDAADALAI 150
+ + + ADALA+
Sbjct: 120 DDMIASARR--RGHTPIDDNQADALAL 144
>gi|33601194|ref|NP_888754.1| hypothetical protein BB2210 [Bordetella bronchiseptica RB50]
gi|33602484|ref|NP_890044.1| hypothetical protein BB3509 [Bordetella bronchiseptica RB50]
gi|33575629|emb|CAE32707.1| phage-related conserved hypothetical protein [Bordetella
bronchiseptica RB50]
gi|33576923|emb|CAE34003.1| phage-related conserved hypothetical protein [Bordetella
bronchiseptica RB50]
Length = 227
Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 32/147 (21%), Positives = 50/147 (34%), Gaps = 5/147 (3%)
Query: 4 SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
++ I+ +D G + GW + + S R + L +VI
Sbjct: 75 NVTILALDLG-TKLGWAV-RGRDGRTSH-GTEVFTPRASWSPGQRWLRARSFLVEVITQR 131
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
+ A E V + A G I + R+ + TIKK G G+ DK
Sbjct: 132 QVHAIAYEDVKRHTGTDAAHAYGAFLCIVEMLADSHRLRLLPVGVGTIKKHWTGKGNADK 191
Query: 124 KQIHMMLKMLMPESFFKGKDAADALAI 150
+ K + + ADALAI
Sbjct: 192 ADMIAEAKA--RGFRPETDNDADALAI 216
>gi|6723241|dbj|BAA89637.1| hypothetical protein [Wolbachia phage WO]
Length = 151
Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 29/150 (19%), Positives = 52/150 (34%), Gaps = 17/150 (11%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ I+ +D G ++TGW I +++G I S + R +
Sbjct: 1 MSILTLDLG-KQTGWAI----------LTNGVIKSGSKSFHGSRFSGGGMCFLNFRNWLN 49
Query: 65 ----PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
E+V + A G A+ IP TIK+ + G G+
Sbjct: 50 SLKDISAVYFEEVRRHLGTDAAHCYGGFLAVLSAWCEENNIPYQGVNVKTIKRFIAGKGN 109
Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAI 150
K ++ ++ + + ADALA+
Sbjct: 110 ASKSEVIEAIRE--KSFSPRDDNEADALAL 137
>gi|163784663|ref|ZP_02179489.1| hypothetical protein HG1285_11048 [Hydrogenivirga sp. 128-5-R1-1]
gi|159880062|gb|EDP73740.1| hypothetical protein HG1285_11048 [Hydrogenivirga sp. 128-5-R1-1]
Length = 179
Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLA-FRLCQLYEGLTDVIKNW 63
+ II IDPG+ +TG+ + G N + GTI + + R+ ++ E + D+I
Sbjct: 1 MSIIAIDPGIEKTGYAV----GANNKVLEIGTIKTSKKDGTDFDRVSKIKEAVRDLILKH 56
Query: 64 RPEEAAVEQVFVNKDA 79
+ +E+ V +
Sbjct: 57 QVSLMLIEEYHVYGNP 72
>gi|319406622|emb|CBI80263.1| conserved hypothetical protein [Bartonella sp. 1-1C]
Length = 159
Score = 58.0 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 34/147 (23%), Positives = 55/147 (37%), Gaps = 10/147 (6%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVR--QSLAFRLCQLYEGLTDV-IKNW 63
I+ D G +TGW I G + SG + R + R + + L ++ +
Sbjct: 8 ILCFDLG-TKTGWAICGADG----HIISGVMNFQPRRFEGGGMRYLRFKQWLNEIKLTAG 62
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
R + E+V + A G A +IP +TIKK G G+ K
Sbjct: 63 RIDAVYFEEVRRHIGTDAAHVYGGLLATLTAWCEYYQIPYEGIPVSTIKKETTGKGNASK 122
Query: 124 KQIHMMLKMLMPESFFKGKDAADALAI 150
+++ + + ADALAI
Sbjct: 123 EEMIKAVCA--KGHAPCDDNEADALAI 147
>gi|237732990|ref|ZP_04563471.1| predicted protein [Mollicutes bacterium D7]
gi|229383894|gb|EEO33985.1| predicted protein [Coprobacillus sp. D7]
Length = 172
Score = 58.0 bits (139), Expect = 5e-07, Method: Composition-based stats.
Identities = 23/108 (21%), Positives = 45/108 (41%), Gaps = 4/108 (3%)
Query: 47 FRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDA-VATLKLGQARAIAILSPALARIPVSE 105
++ + + D IK + P+ E +F+ K+ ++ L + + I P+
Sbjct: 46 EKMRYISTYINDFIKKYPPKSFTAEGIFIKKEFLASSETLMKVHGMVIEKFINY--PIKY 103
Query: 106 YAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESFFKGKDAADALAIAVC 153
P IKK + G G+ K+ + + + D ADALA+ +
Sbjct: 104 IPPANIKKNITGKGNASKELVRQNICKKLNIQGI-NYDEADALALMLT 150
>gi|29566202|ref|NP_817770.1| gp9 [Mycobacterium phage Rosebush]
gi|29424927|gb|AAN01851.1| gp9 [Mycobacterium phage Rosebush]
Length = 162
Score = 57.6 bits (138), Expect = 5e-07, Method: Composition-based stats.
Identities = 20/120 (16%), Positives = 47/120 (39%), Gaps = 3/120 (2%)
Query: 34 SGTIVSCVRQSL---AFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARA 90
G + + R+ ++ +G+ + + + +E++ A + L
Sbjct: 14 VGASKPKKGDTWLARSRRVHEVLDGIAGALDDGHYDAVGLEELAYGAKGDAVVVLHWLWG 73
Query: 91 IAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESFFKGKDAADALAI 150
+ L IP+ + +KK G G+ K ++ + + P+ K + +DALA+
Sbjct: 74 EVVNLVRLRDIPLYLVNVSGVKKFATGNGNAKKDEVMLAMANRFPQYTIKDNNQSDALAV 133
>gi|294678257|ref|YP_003578872.1| hypothetical protein RCAP_rcc02736 [Rhodobacter capsulatus SB 1003]
gi|294477077|gb|ADE86465.1| conserved hypothetical protein [Rhodobacter capsulatus SB 1003]
Length = 173
Score = 57.6 bits (138), Expect = 6e-07, Method: Composition-based stats.
Identities = 36/147 (24%), Positives = 54/147 (36%), Gaps = 10/147 (6%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVR--QSLAFRLCQLYEGLTDVIKNWR 64
I+ +D G TGW I + ++SGT+ R +L LT++ +
Sbjct: 22 ILALDLG-TSTGWAI----RSHDALITSGTVSLRPGRFDGGGMRYLRLTNWLTEIDRLSG 76
Query: 65 PEEAAV-EQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
P A E+V + A G A L IP TIK+ G G+ DK
Sbjct: 77 PIAAIWFEEVRRHVGTDAAHVYGGLMATLTAWAELRGIPYQGVPVGTIKRHATGKGNADK 136
Query: 124 KQIHMMLKMLMPESFFKGKDAADALAI 150
+ + + ADA+AI
Sbjct: 137 DAMVAAARA--RGFSPADDNEADAIAI 161
>gi|322382742|ref|ZP_08056588.1| hypothetical protein PL1_2744 [Paenibacillus larvae subsp. larvae
B-3650]
gi|321153286|gb|EFX45728.1| hypothetical protein PL1_2744 [Paenibacillus larvae subsp. larvae
B-3650]
Length = 196
Score = 57.2 bits (137), Expect = 7e-07, Method: Composition-based stats.
Identities = 26/124 (20%), Positives = 51/124 (41%), Gaps = 11/124 (8%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+R +GIDP +TG+ +D G + + +S + R+ L + + D I +
Sbjct: 12 MRFVGIDP-STKTGFVALDQLGKVSKAKEL----TGINKSDSIRIITLVDEIMDHI---Q 63
Query: 65 P-EEAAVEQV-FVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
P + +E K + G + ++P +E P+ +KK G G+
Sbjct: 64 PGDRVCIEGFAHAAKGNYVSQMFGIGWG-IRTALTRRKVPYTEVTPSQLKKFATGKGNAK 122
Query: 123 KKQI 126
K+ +
Sbjct: 123 KEDL 126
>gi|319405049|emb|CBI78658.1| conserved hypothetical protein [Bartonella sp. AR 15-3]
Length = 157
Score = 57.2 bits (137), Expect = 9e-07, Method: Composition-based stats.
Identities = 33/147 (22%), Positives = 55/147 (37%), Gaps = 10/147 (6%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVR--QSLAFRLCQLYEGLTDVIKNWR 64
I+ +D G +TGW + G + S T R + R + + L ++ ++
Sbjct: 5 ILCLDLG-TKTGWALCGADG----HIISDTEHFPSRCFEGGGMRYLRFKQWLMEINRSVD 59
Query: 65 -PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
+ E+V + A G A +IP TIKKA G G+ K
Sbjct: 60 GIDAVYFEEVRRHVGTDAAHVYGGFLATLTAWCEHHQIPYEGIPVGTIKKATTGKGNASK 119
Query: 124 KQIHMMLKMLMPESFFKGKDAADALAI 150
+++ + + ADALAI
Sbjct: 120 EEMIEAMCS--KGHSPCDDNEADALAI 144
>gi|167461747|ref|ZP_02326836.1| hypothetical protein Plarl_04195 [Paenibacillus larvae subsp.
larvae BRL-230010]
Length = 185
Score = 56.8 bits (136), Expect = 9e-07, Method: Composition-based stats.
Identities = 26/124 (20%), Positives = 51/124 (41%), Gaps = 11/124 (8%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+R +GIDP +TG+ +D G + + +S + R+ L + + D I +
Sbjct: 1 MRFVGIDP-STKTGFVALDQLGKVSKAKEL----TGINKSDSIRIITLVDEIMDHI---Q 52
Query: 65 P-EEAAVEQV-FVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
P + +E K + G + ++P +E P+ +KK G G+
Sbjct: 53 PGDRVCIEGFAHAAKGNYVSQMFGIGWG-IRTALTRRKVPYTEVTPSQLKKFATGKGNAK 111
Query: 123 KKQI 126
K+ +
Sbjct: 112 KEDL 115
>gi|117926194|ref|YP_866811.1| hypothetical protein Mmc1_2914 [Magnetococcus sp. MC-1]
gi|117609950|gb|ABK45405.1| conserved hypothetical protein [Magnetococcus sp. MC-1]
Length = 168
Score = 56.8 bits (136), Expect = 9e-07, Method: Composition-based stats.
Identities = 31/149 (20%), Positives = 55/149 (36%), Gaps = 9/149 (6%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRL--CQLYEGLTDVIKNWR 64
I+ +D G + GW + G + SGT+ + + + + L ++
Sbjct: 19 ILSLDLGTQ-MGWALRHPDGT----IVSGTVSFKLGRFEGGGMQWVRFKHWLDELGAAVV 73
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
+ E+V + A+ G A + +P TIKK G G+ K
Sbjct: 74 LGKIYFEEVRRHSGVGASHVYGGFLAHLTAWAESSEVPYQGVPVGTIKKHATGKGNASKA 133
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAVC 153
Q+ +K L + +DALA+ C
Sbjct: 134 QVIHAMKRLGHN--PADDNESDALALLHC 160
>gi|167461708|ref|ZP_02326797.1| hypothetical protein Plarl_04000 [Paenibacillus larvae subsp.
larvae BRL-230010]
gi|167461721|ref|ZP_02326810.1| hypothetical protein Plarl_04065 [Paenibacillus larvae subsp.
larvae BRL-230010]
gi|167461732|ref|ZP_02326821.1| hypothetical protein Plarl_04120 [Paenibacillus larvae subsp.
larvae BRL-230010]
Length = 185
Score = 56.8 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 26/124 (20%), Positives = 51/124 (41%), Gaps = 11/124 (8%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+R +GIDP +TG+ +D G + + +S + R+ L + + D I +
Sbjct: 1 MRFVGIDP-STKTGFVALDQLGKVSKAKEL----TGINKSDSIRIITLVDEIMDHI---Q 52
Query: 65 P-EEAAVEQV-FVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
P + +E K + G + ++P +E P+ +KK G G+
Sbjct: 53 PGDRVFIEGFAHAAKGNYVSQMFGIGWG-IRTALTRRKVPYTEVTPSQLKKFATGKGNAK 111
Query: 123 KKQI 126
K+ +
Sbjct: 112 KEDL 115
>gi|152982142|ref|YP_001354387.1| bacteriophage-related protein [Janthinobacterium sp. Marseille]
gi|151282219|gb|ABR90629.1| bacteriophage-related protein [Janthinobacterium sp. Marseille]
Length = 158
Score = 56.8 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 29/147 (19%), Positives = 50/147 (34%), Gaps = 10/147 (6%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGT--IVSCVRQSLAFRLCQLYEGLTDVIKNW- 63
I+ +D G TGW + + ++SGT + R + L +++
Sbjct: 9 ILALDLG-THTGWALHQLD----STITSGTEHFKPQRFEGGGMRFLRFKRWLAELLTTSG 63
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
E+V + A G IP TIKK G G+ K
Sbjct: 64 HINAVYFEEVRRHAGVDAAHAYGGFMGHLTAWCEHHNIPYQGVPVGTIKKHATGKGNAGK 123
Query: 124 KQIHMMLKMLMPESFFKGKDAADALAI 150
++ ++ + + ADALA+
Sbjct: 124 DEMIASVQ--LRGHVPCDDNEADALAL 148
>gi|319405071|emb|CBI78678.1| conserved hypothetical protein [Bartonella sp. AR 15-3]
Length = 159
Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 36/148 (24%), Positives = 58/148 (39%), Gaps = 12/148 (8%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVR--QSLAFRLCQLYEGLTDVIKNW- 63
I+ +D G +TGW + G + S T R + R + + L ++ ++
Sbjct: 8 ILCLDLG-TKTGWALCGADG----HIISDTEHFPSRRFEGGGMRYLRFKQWLMEINRSVD 62
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
R + E+V + A G A +IP TIKKA G G+ K
Sbjct: 63 RIDAVYFEEVRRHIGTDAAHVYGGFLATLTAWCEHHQIPYEGIPVGTIKKATTGKGNASK 122
Query: 124 KQIHMMLKMLMPESFFKGKD-AADALAI 150
+ M++ + + D ADALAI
Sbjct: 123 E---EMIEAMCSKGHAPCDDNEADALAI 147
>gi|194015195|ref|ZP_03053811.1| hypothetical protein BAT_0150 [Bacillus pumilus ATCC 7061]
gi|194012599|gb|EDW22165.1| hypothetical protein BAT_0150 [Bacillus pumilus ATCC 7061]
Length = 186
Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 29/168 (17%), Positives = 60/168 (35%), Gaps = 18/168 (10%)
Query: 2 RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
K IR + D + G I++V + + +S A R ++ EG +
Sbjct: 4 AKPIRCLAFDTSMTCPGVAIIEVRKGKPIIKALSHVKPNTSRSHAHR-AEVIEGWAMLFL 62
Query: 62 NWRPEEA----AVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEY----------- 106
+ A V + F K + + + A + + + +Y
Sbjct: 63 DKHVGTAGFDYVVREDFAGKTSRSNYPVLSAWNACERATSRFGLTFDKYKKPGKKTEDLG 122
Query: 107 -APNTIKKAVIGVGHGDKKQIHMMLKML-MPESFFKGKDAADALAIAV 152
+ +K V G G+ +K ++ ++ + + F D +DA AI +
Sbjct: 123 ISATRVKSLVAGSGNAEKDEVEAGVRRITGYDGTFANFDESDAAAIGL 170
>gi|46201154|ref|ZP_00207990.1| hypothetical protein Magn03010367 [Magnetospirillum magnetotacticum
MS-1]
Length = 190
Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/147 (21%), Positives = 52/147 (35%), Gaps = 10/147 (6%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGT--IVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
++ +D G TGW ++ G + SGT + R + L ++ + +
Sbjct: 39 VLALDLGST-TGWAMLLADGT----LVSGTMQFRPSRYEGGGMRYLRFRSWLDHLLNSAK 93
Query: 65 -PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
E+V + A G A L IP TIK+ G G+ K
Sbjct: 94 EIGSVCFEEVRRHAGTDAAHLYGGFLAHLSAWCELNDIPYQGVPVGTIKRHATGKGNAGK 153
Query: 124 KQIHMMLKMLMPESFFKGKDAADALAI 150
+ ++ + + ADALAI
Sbjct: 154 DAVIAAMRA--KGFNPEDDNEADALAI 178
>gi|209883956|ref|YP_002287813.1| holliday junction resolvasome, endonuclease subunit [Oligotropha
carboxidovorans OM5]
gi|209872152|gb|ACI91948.1| holliday junction resolvasome, endonuclease subunit [Oligotropha
carboxidovorans OM5]
Length = 178
Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 32/147 (21%), Positives = 55/147 (37%), Gaps = 10/147 (6%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGT--IVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
I+ +D G TGW + D G ++SG + + L+++ +
Sbjct: 27 ILALDLGST-TGWALRDTTG----VITSGVQQFRPNRFEGGGMAFLRFNHWLSELAGSPG 81
Query: 65 PEEAAV-EQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
P A E+V + +A G A +P TIK+ + G G+ DK
Sbjct: 82 PIAAVFFEEVRAHAGTLAAHVYGGFLAHLEAWAEFRDVPYQGVPVGTIKRFIAGKGNADK 141
Query: 124 KQIHMMLKMLMPESFFKGKDAADALAI 150
+ + +K + ADA+AI
Sbjct: 142 QAVIAAVKA--RGFAPIDDNEADAIAI 166
>gi|225630342|ref|YP_002727133.1| Putative Holliday junction resolvasome, endonuclease subunit
[Wolbachia sp. wRi]
gi|225630736|ref|YP_002727527.1| Holliday junction resolvasome, endonuclease subunit [Wolbachia sp.
wRi]
gi|225592323|gb|ACN95342.1| Putative Holliday junction resolvasome, endonuclease subunit
[Wolbachia sp. wRi]
gi|225592717|gb|ACN95736.1| Holliday junction resolvasome, endonuclease subunit [Wolbachia sp.
wRi]
Length = 151
Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/150 (19%), Positives = 51/150 (34%), Gaps = 17/150 (11%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ I+ +D G ++TGW I ++ G I S + R +
Sbjct: 1 MSILTLDLG-KQTGWAI----------LTDGIIESGSKSFHGSRFSGGGMCFLNFCNWLN 49
Query: 65 ----PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
E+V + A G A+ IP TIK+ + G G+
Sbjct: 50 SLKDISAVYFEEVRRHLGTDAAHCYGGFLAVLSAWCEENNIPYQGVNVKTIKRFIAGKGN 109
Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAI 150
K ++ ++ + + ADALA+
Sbjct: 110 ASKSEVIEAIRE--KSFSPRDDNEADALAL 137
>gi|326425033|ref|YP_004286256.1| holliday junction resolvase [Tsukamurella phage TPA2]
gi|323145685|gb|ADX31929.1| holliday junction resolvase [Tsukamurella phage TPA2]
Length = 191
Score = 55.7 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/153 (16%), Positives = 47/153 (30%), Gaps = 14/153 (9%)
Query: 6 RIIGIDPGLRRTGWGIVDV------AGDNLCFVSSGTIVSCVR-----QSLAFRLCQLYE 54
++G+DP L TG +++V + + T+ + L R+ + +
Sbjct: 3 IVVGVDPSLTATGLCVLNVAEPAFMDDPAPGY-DARTLTVPSKSSKTWHDLYLRIHGVAQ 61
Query: 55 GLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKA 114
+ D + + +EQ A IPV P
Sbjct: 62 TINDAVDYA--DVIVMEQPAFASRTGKQHDRSWLWGEVYTRFADRNIPVLTARPQDRCLY 119
Query: 115 VIGVGHGDKKQIHMMLKMLMPESFFKGKDAADA 147
G G+ K+++ E + ADA
Sbjct: 120 ATGKGNAKKEEVMAATIRRYTEIDIPNNNVADA 152
>gi|297518840|ref|ZP_06937226.1| Holliday junction resolvase [Escherichia coli OP50]
Length = 89
Score = 55.7 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 29/53 (54%)
Query: 89 RAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESFFKG 141
R +AI++ +PV EYA +K+ V+G+G +K Q+ M++ L+
Sbjct: 1 RGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQVQHMVRTLLKLPANPQ 53
>gi|119472455|ref|ZP_01614554.1| Holliday junction nuclease [Alteromonadales bacterium TW-7]
gi|119444892|gb|EAW26191.1| Holliday junction nuclease [Alteromonadales bacterium TW-7]
Length = 85
Score = 55.7 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/73 (42%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 96 PALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHA 155
A+A +PV EY+ IK+AV+G G DK Q+ M+K ++ DAADALAIA+CHA
Sbjct: 3 AAMADLPVFEYSARQIKQAVVGNGGADKSQVQHMVKNILKLPGTPQADAADALAIAICHA 62
Query: 156 YHANSGYYKIASQ 168
+ + K+A
Sbjct: 63 HSEQN-LIKLAGS 74
>gi|317508631|ref|ZP_07966287.1| hypothetical protein HMPREF9336_02659 [Segniliparus rugosus ATCC
BAA-974]
gi|316253034|gb|EFV12448.1| hypothetical protein HMPREF9336_02659 [Segniliparus rugosus ATCC
BAA-974]
Length = 194
Score = 55.7 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/153 (18%), Positives = 53/153 (34%), Gaps = 10/153 (6%)
Query: 9 GIDPGLRRTGWGIVDVAGDNLCFVS-SGT--------IVSCVRQSLAFRLCQLYEGLTDV 59
GID L TG ++ FV+ G+ +SL R+
Sbjct: 3 GIDLSLASTGVALLGADPTQPPFVTTVGSKACPDRLDAHLARHRSLVDRIATAVFDRCKS 62
Query: 60 IKNWRPEEAAVEQVFV-NKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGV 118
+ +E +K ++ + +P++ P+ +KK V G
Sbjct: 63 VAPDGVALVVLEGPSYASKADTSSWRRAHIWWELAGRFHDLGVPIAVCPPSVLKKFVTGK 122
Query: 119 GHGDKKQIHMMLKMLMPESFFKGKDAADALAIA 151
G K ++ + ++ PE D ADA+ +A
Sbjct: 123 GTAKKLEVALAVQRAWPELAISLDDEADAIGLA 155
>gi|83310255|ref|YP_420519.1| hypothetical protein amb1156 [Magnetospirillum magneticum AMB-1]
gi|82945096|dbj|BAE49960.1| hypothetical protein [Magnetospirillum magneticum AMB-1]
Length = 155
Score = 55.7 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 33/147 (22%), Positives = 53/147 (36%), Gaps = 10/147 (6%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGT--IVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
I+ +D G TGW + G + SGT + R + L ++ +
Sbjct: 4 ILALDLGTT-TGWAMCLADGS----IVSGTMEFKPGRYEGGGMRFLRFRSWLDHLLNGAK 58
Query: 65 -PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
+ E+V + A G A L IP TIK+ V G G+ K
Sbjct: 59 AIDLLHFEEVRRHAGTDAAHIYGGFLAHLTAWCELKSIPYQGVPVGTIKRHVTGKGNAGK 118
Query: 124 KQIHMMLKMLMPESFFKGKDAADALAI 150
+ + ++ + + ADALAI
Sbjct: 119 EAVIAAMRS--KGFNPEDDNEADALAI 143
>gi|220926727|ref|YP_002502029.1| putative bacteriophage-like protein [Methylobacterium nodulans ORS
2060]
gi|219951334|gb|ACL61726.1| putative bacteriophage-related protein [Methylobacterium nodulans
ORS 2060]
Length = 174
Score = 55.3 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 32/151 (21%), Positives = 49/151 (32%), Gaps = 11/151 (7%)
Query: 5 IR-IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCV-RQSLAFRLCQLYEGLTDVIKN 62
+R I+ +D + TGW + GD + G + L + L+ I
Sbjct: 1 MRKILALDLSVASTGWALGSPDGDP----AFGHYTLPSTGNDIGKLLAAFQDWLSLKIAG 56
Query: 63 WRPEEAAVEQVFVN---KDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVG 119
E + KL + L A I E T KK G G
Sbjct: 57 EDIAIVVFEAPILTPGKTHITTARKLMCLAGVTELVCHQAEIRCIEENIQTNKKRFAGHG 116
Query: 120 HGDKKQIHMMLKMLMPESFFKGKDAADALAI 150
DK+ + + + + D ADALA+
Sbjct: 117 RADKETMMHVARR--YGWDVQRDDEADALAL 145
>gi|152982978|ref|YP_001354444.1| hypothetical protein mma_2754 [Janthinobacterium sp. Marseille]
gi|151283055|gb|ABR91465.1| Hypothetical protein mma_2754 [Janthinobacterium sp. Marseille]
Length = 258
Score = 54.9 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 33/152 (21%), Positives = 53/152 (34%), Gaps = 20/152 (13%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFR-------LCQLYEGLTDV 59
I+ +D G TGW + G + GTI S R + LT++
Sbjct: 109 ILALDLGTT-TGWAL---RGRD------GTICSSSEAFKPQRFEGGGMRYLRFKRWLTEI 158
Query: 60 IKNWR-PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGV 118
++ + E+V + A G A +IP TIKK G
Sbjct: 159 KQSCDGIDAVFFEEVRRHAGVDAAHAYGGFMAHLTAWCEHHKIPYQGVPVGTIKKHATGK 218
Query: 119 GHGDKKQIHMMLKMLMPESFFKGKDAADALAI 150
G+ K ++ ++ + +DALAI
Sbjct: 219 GNASKDEMIGAMRQ--RGFQPGDDNESDALAI 248
>gi|213019865|ref|ZP_03335665.1| putative phage related protein [Wolbachia endosymbiont of Culex
quinquefasciatus JHB]
gi|212994549|gb|EEB55197.1| putative phage related protein [Wolbachia endosymbiont of Culex
quinquefasciatus JHB]
Length = 147
Score = 54.9 bits (131), Expect = 4e-06, Method: Composition-based stats.
Identities = 25/138 (18%), Positives = 42/138 (30%), Gaps = 16/138 (11%)
Query: 17 TGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR----PEEAAVEQ 72
TGW I ++ G I S R + E+
Sbjct: 12 TGWAI----------LTDGVIESGSESFHTSRFSGGGMCFLNFRNWLNSLKEISVVYFEE 61
Query: 73 VFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKM 132
V + A G A+ +P TIK+ + G G+ K ++ +K
Sbjct: 62 VRRHLGTDAAHCYGGFLAVLSAWCEEHHVPYKGVNVKTIKRFIAGNGNASKSEVIEAVKE 121
Query: 133 LMPESFFKGKDAADALAI 150
+ + +DALA+
Sbjct: 122 --KGFLPRDDNESDALAL 137
>gi|190570707|ref|YP_001975065.1| Putative phage related protein [Wolbachia endosymbiont of Culex
quinquefasciatus Pel]
gi|190570761|ref|YP_001975119.1| Putative phage related protein [Wolbachia endosymbiont of Culex
quinquefasciatus Pel]
gi|190356979|emb|CAQ54367.1| Putative phage related protein [Wolbachia endosymbiont of Culex
quinquefasciatus Pel]
gi|190357033|emb|CAQ54426.1| Putative phage related protein [Wolbachia endosymbiont of Culex
quinquefasciatus Pel]
Length = 154
Score = 54.9 bits (131), Expect = 4e-06, Method: Composition-based stats.
Identities = 25/138 (18%), Positives = 42/138 (30%), Gaps = 16/138 (11%)
Query: 17 TGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR----PEEAAVEQ 72
TGW I ++ G I S R + E+
Sbjct: 12 TGWAI----------LTDGVIESGSESFHTSRFSGGGMCFLNFRNWLNSLKEISVVYFEE 61
Query: 73 VFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKM 132
V + A G A+ +P TIK+ + G G+ K ++ +K
Sbjct: 62 VRRHLGTDAAHCYGGFLAVLSAWCEEHHVPYKGVNVKTIKRFIAGNGNASKSEVIEAVKE 121
Query: 133 LMPESFFKGKDAADALAI 150
+ + +DALA+
Sbjct: 122 --KGFLPRDDNESDALAL 137
>gi|188581957|ref|YP_001925402.1| hypothetical protein Mpop_2712 [Methylobacterium populi BJ001]
gi|179345455|gb|ACB80867.1| hypothetical protein Mpop_2712 [Methylobacterium populi BJ001]
Length = 185
Score = 54.9 bits (131), Expect = 4e-06, Method: Composition-based stats.
Identities = 30/127 (23%), Positives = 49/127 (38%), Gaps = 13/127 (10%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+R++GIDPG G+ + G SGTI S + L + ++I +
Sbjct: 1 MRVLGIDPGGAS-GYA-YGLPGQKPK---SGTIRLDSGFSNGRKFATLEGRVRNIIGVYE 55
Query: 65 PEEAAVEQVFVNKDAV----ATLKLGQARAIAILSPALAR----IPVSEYAPNTIKKAVI 116
+ +E ++ D ++LG AIL +S PN +K I
Sbjct: 56 IDAVFIEAPYIQTDPRKFDIQVVRLGYGYQAAILMACEKEGIGPERISLVEPNLWRKFAI 115
Query: 117 GVGHGDK 123
G G+ K
Sbjct: 116 GRGNAPK 122
>gi|86136188|ref|ZP_01054767.1| hypothetical protein MED193_18734 [Roseobacter sp. MED193]
gi|85827062|gb|EAQ47258.1| hypothetical protein MED193_18734 [Roseobacter sp. MED193]
Length = 299
Score = 54.5 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 31/146 (21%), Positives = 51/146 (34%), Gaps = 10/146 (6%)
Query: 8 IGIDPGLRRTGWGIVDVAGDNLCFVSSGT--IVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
+ +D G TGW + G ++SGT + R + L ++ + P
Sbjct: 149 LALDLGTT-TGWALHGADG----LITSGTASFRNGRFDGGGMRYLRFTNWLGELERLSGP 203
Query: 66 EEAAV-EQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
A E+V + A G A L +P TIK+ G G+ +K
Sbjct: 204 IAAIWFEEVRRHAGTDAAHVYGGLMATLTAWAELRGVPYEGVPVGTIKRHATGKGNANKD 263
Query: 125 QIHMMLKMLMPESFFKGKDAADALAI 150
+ + + ADA+AI
Sbjct: 264 AMIAAARA--RGFSPVDDNEADAIAI 287
>gi|163868176|ref|YP_001609384.1| hypothetical protein Btr_0993 [Bartonella tribocorum CIP 105476]
gi|161017831|emb|CAK01389.1| phage-related conserved hypothetical protein [Bartonella tribocorum
CIP 105476]
Length = 158
Score = 54.5 bits (130), Expect = 5e-06, Method: Composition-based stats.
Identities = 37/147 (25%), Positives = 58/147 (39%), Gaps = 12/147 (8%)
Query: 8 IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVR--QSLAFRLCQLYEGLTDV-IKNWR 64
+ D G +TGW I G + + SGT+ R + R + + LT++
Sbjct: 6 LCFDLG-TKTGWAI---RGGDDSII-SGTMSFQPRRFEGGGMRYLRFKQWLTEIKHTAGG 60
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
+ E+V + A G A +IP +TIKKA G G+ K+
Sbjct: 61 IDAVYFEEVRRHVGTDAAHVYGGLLATLTAWCEHHQIPYEGIPVSTIKKATTGKGNASKE 120
Query: 125 QIHMMLKMLMPESFFKGKD-AADALAI 150
M++ + + D ADALAI
Sbjct: 121 ---EMIEAMCIKGHKPCDDNEADALAI 144
>gi|190573867|ref|YP_001971712.1| hypothetical protein Smlt1885 [Stenotrophomonas maltophilia K279a]
gi|190011789|emb|CAQ45409.1| conserved hypothetical protein [Stenotrophomonas maltophilia K279a]
Length = 158
Score = 54.5 bits (130), Expect = 5e-06, Method: Composition-based stats.
Identities = 32/153 (20%), Positives = 55/153 (35%), Gaps = 12/153 (7%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGT--IVSCVRQSLAFRLCQLYEGLTD 58
M + I+ +D G TGW + G ++SG+ + R + LT+
Sbjct: 1 MTTT--ILALDLGTT-TGWALQGCDG----HITSGSESFKPQRFEGGGMRFLRFKRWLTE 53
Query: 59 VIKNWR-PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIG 117
+ ++ + E+V + A G A +IP TIKK G
Sbjct: 54 IKQSCDGIDCLHFEEVRRHVSTDAAHAYGGFLATLTAWCEHHQIPYQGVPVGTIKKYATG 113
Query: 118 VGHGDKKQIHMMLKMLMPESFFKGKDAADALAI 150
G+ K ++ + + ADALA+
Sbjct: 114 KGNASKDEMVASARA--RGHAPVDDNEADALAL 144
>gi|239941245|ref|ZP_04693182.1| hypothetical protein SrosN15_09646 [Streptomyces roseosporus NRRL
15998]
gi|239987701|ref|ZP_04708365.1| hypothetical protein SrosN1_10383 [Streptomyces roseosporus NRRL
11379]
Length = 205
Score = 54.5 bits (130), Expect = 6e-06, Method: Composition-based stats.
Identities = 29/125 (23%), Positives = 50/125 (40%), Gaps = 11/125 (8%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RIIG+D L TG + V+ I + + RL + + + + R
Sbjct: 27 LRIIGLDLSLTSTGVCL-------PTGVTY-RIKTRQKDG-DRRLLVIRDRIRAALAEHR 77
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P A VE + V+ A+A + G + A +P + P T+K G+ DK
Sbjct: 78 PHLAVVEDLPVH--AMAAGRTGHVHGVVKAELLDADVPYALVVPATLKSYACDHGNADKA 135
Query: 125 QIHMM 129
++
Sbjct: 136 RMSAA 140
>gi|291444687|ref|ZP_06584077.1| Pas46 [Streptomyces roseosporus NRRL 15998]
gi|291347634|gb|EFE74538.1| Pas46 [Streptomyces roseosporus NRRL 15998]
Length = 219
Score = 54.1 bits (129), Expect = 6e-06, Method: Composition-based stats.
Identities = 29/125 (23%), Positives = 50/125 (40%), Gaps = 11/125 (8%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RIIG+D L TG + V+ I + + RL + + + + R
Sbjct: 41 LRIIGLDLSLTSTGVCL-------PTGVTY-RIKTRQKDG-DRRLLVIRDRIRAALAEHR 91
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P A VE + V+ A+A + G + A +P + P T+K G+ DK
Sbjct: 92 PHLAVVEDLPVH--AMAAGRTGHVHGVVKAELLDADVPYALVVPATLKSYACDHGNADKA 149
Query: 125 QIHMM 129
++
Sbjct: 150 RMSAA 154
>gi|218782409|ref|YP_002433727.1| hypothetical protein Dalk_4581 [Desulfatibacillum alkenivorans
AK-01]
gi|218763793|gb|ACL06259.1| hypothetical protein Dalk_4581 [Desulfatibacillum alkenivorans
AK-01]
Length = 189
Score = 54.1 bits (129), Expect = 7e-06, Method: Composition-based stats.
Identities = 28/141 (19%), Positives = 44/141 (31%), Gaps = 13/141 (9%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCV--------RQSLAFRLCQLYEGLTD 58
I+ +D GL TG+ + + G + A R L +
Sbjct: 2 ILALDVGLSNTGYCVFENGKPQ----EWGVCTTSPVKKKTVRVADDRADRSASLARQIRA 57
Query: 59 VIKNWRPEEAAVEQVFVN-KDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIG 117
V++ E + A A + QA I + AL IP P +KKA G
Sbjct: 58 VVEKHGVTGIVGELPSGGAQSAKAMGDMTQAVGIVAATAALLGIPAEWCTPTDVKKAATG 117
Query: 118 VGHGDKKQIHMMLKMLMPESF 138
K++I +
Sbjct: 118 KASASKEEIADAMAKKYGLEK 138
>gi|41057228|ref|NP_958254.1| hypothetical protein VWBp12 [Streptomyces phage VWB]
gi|39656051|gb|AAR29702.1| hypothetical protein [Streptomyces phage VWB]
Length = 258
Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/125 (20%), Positives = 48/125 (38%), Gaps = 11/125 (8%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+R++G+D L TG + G + I + + RL Q+ + + + R
Sbjct: 85 LRVLGLDLSLTSTGVCL--PDGSTVR------IKTRQKDG-DRRLVQVRDFIRAAVAGDR 135
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P A +E + K A++ + + A +P + P T+K G DK
Sbjct: 136 PHVAVIEDLP--KHAMSAGLTARVHGPVVCELIDAGVPYAYVVPATLKSYACDHGAADKS 193
Query: 125 QIHMM 129
++
Sbjct: 194 RMSAA 198
>gi|109392360|ref|YP_654904.1| gp7 [Mycobacterium phage Cooper]
gi|88910194|gb|ABD58124.1| gp7 [Mycobacterium phage Cooper]
Length = 158
Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 21/117 (17%), Positives = 44/117 (37%), Gaps = 1/117 (0%)
Query: 35 GTIVSCVRQSLAFRLCQLYEGLT-DVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAI 93
G ++++ R+ L E + + RP+ +E + + L I
Sbjct: 14 GPTKDKSKRAMCRRVNALLEQIEWCFTDDERPDAMGIEALAYGAKGASAWVLPWIFGRVI 73
Query: 94 LSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESFFKGKDAADALAI 150
+P++ + K G G+ DK+ + + +PE+ + ADAL +
Sbjct: 74 ELAEKYDVPLTTVSTAGRAKFATGKGNADKETVLLAAARAVPEAAVTNNNEADALIV 130
>gi|167465488|ref|ZP_02330577.1| crossover junction endodeoxyribonuclease RuvC [Paenibacillus larvae
subsp. larvae BRL-230010]
gi|167465629|ref|ZP_02330718.1| crossover junction endodeoxyribonuclease RuvC [Paenibacillus larvae
subsp. larvae BRL-230010]
Length = 76
Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 16/72 (22%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Query: 94 LSPALARIPVSEY-APNTIKKAVIGVGHGDKKQIHMMLKMLMPES---FFKGKDAADALA 149
+ V+++ +P+T+K+ V G G +K+ + ++ L+ F D +DA A
Sbjct: 3 RALERFGQHVTDHLSPSTVKRIVAGNGKAEKEDVAEEVRKLLGLPLDHVFASDDESDACA 62
Query: 150 IAVCHAYHANSG 161
+ + A+ +G
Sbjct: 63 VVL--AWLIQNG 72
>gi|222112385|ref|YP_002554649.1| hypothetical protein Dtpsy_3220 [Acidovorax ebreus TPSY]
gi|221731829|gb|ACM34649.1| conserved hypothetical protein [Acidovorax ebreus TPSY]
Length = 158
Score = 52.6 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/147 (21%), Positives = 53/147 (36%), Gaps = 10/147 (6%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGT--IVSCVRQSLAFRLCQLYEGLTDVIKNW- 63
I+ +D G TGW + G ++SG+ + R + LT++ ++
Sbjct: 5 ILALDLG-TMTGWALRGSDG----HITSGSESFRPQRFEGGGMRFLRFKRWLTEIKQSCD 59
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
+ E+V + A G A +IP TIKK G G+ K
Sbjct: 60 EIDCLHFEEVRRHVSTDAAHAYGGFLATLTAWCEHHQIPYQGVPVGTIKKHATGKGNASK 119
Query: 124 KQIHMMLKMLMPESFFKGKDAADALAI 150
++ + + ADALA+
Sbjct: 120 DEMVASARA--RGHAPADDNEADALAL 144
>gi|220926080|ref|YP_002501382.1| putative bacteriophage-like protein [Methylobacterium nodulans ORS
2060]
gi|219950687|gb|ACL61079.1| putative bacteriophage-related protein [Methylobacterium nodulans
ORS 2060]
Length = 175
Score = 52.6 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 33/151 (21%), Positives = 50/151 (33%), Gaps = 11/151 (7%)
Query: 5 IR-IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCV-RQSLAFRLCQLYEGLTDVIKN 62
+R I+ +D + TGW + GD + G + L + L+ I
Sbjct: 1 MRKILALDLSVASTGWALGSPDGDP----AFGHYALPSTGNDIGKLLAAFQDWLSLKIAG 56
Query: 63 WRPEEAAVEQVFVNKDAV---ATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVG 119
E +++ KL + L A I E T KK G G
Sbjct: 57 EDIALCVFEAPILSRGKTHVLTARKLMGLAGVTELICHRAAIRCVEEHLQTNKKRFAGHG 116
Query: 120 HGDKKQIHMMLKMLMPESFFKGKDAADALAI 150
H DK + + + D ADALA+
Sbjct: 117 HADKHTMMHVARR--YGWDVTRDDEADALAL 145
>gi|291165086|gb|ADD81113.1| gp08 [Rhodococcus phage ReqiPine5]
Length = 223
Score = 52.6 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/164 (15%), Positives = 50/164 (30%), Gaps = 23/164 (14%)
Query: 7 IIGIDPGLRRTGWGIV-----DVAGDNLCFVSSGTIVSCVR---------QSLAFRLCQL 52
++GIDP L ++ GD + ++ + R+ +
Sbjct: 7 VVGIDPSLTGCAVAVLPRRAAREFGDPILHLTKTRATPAKKGAPKVEPSWADRQRRILYV 66
Query: 53 YEGLTDVIKNWRPEEAA-VEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTI 111
+ V+ PE +E + + + + + V PN
Sbjct: 67 ARQVLAVVP---PEATVFIEAPAYSSNMGSAFDRYRLWEQIVERLQRQYCTVVPVLPNHR 123
Query: 112 KKAVIGVGHGDKKQIHMMLKMLMPESFF----KGKD-AADALAI 150
GVG+ K+ + + P K D ADA+A+
Sbjct: 124 AMWATGVGNPSKEDVIRNIAAKFPTLDITWRGKADDNLADAVAL 167
>gi|240850358|ref|YP_002971751.1| phage related protein [Bartonella grahamii as4aup]
gi|240267481|gb|ACS51069.1| phage related protein [Bartonella grahamii as4aup]
Length = 128
Score = 52.2 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/107 (24%), Positives = 43/107 (40%), Gaps = 5/107 (4%)
Query: 46 AFRLCQLYEGLTDVIKNW-RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVS 104
R + + L+++ + + + E+V + A G A +IP
Sbjct: 12 GMRYLRFKQWLSEIKQTAGQIDVVYFEEVRRHVGTDAAHVYGGLLATLTAWCEHHQIPYE 71
Query: 105 EYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESFFKGKD-AADALAI 150
+TIKKA G G+ K+ M+K + + D ADALAI
Sbjct: 72 GIPVSTIKKATTGKGNASKE---EMIKAMRSKGHAPCDDNEADALAI 115
>gi|75675014|ref|YP_317435.1| hypothetical protein Nwi_0818 [Nitrobacter winogradskyi Nb-255]
gi|74419884|gb|ABA04083.1| conserved hypothetical protein [Nitrobacter winogradskyi Nb-255]
Length = 177
Score = 52.2 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/141 (19%), Positives = 52/141 (36%), Gaps = 10/141 (7%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGT--IVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
I+ +D G R TGW ++ +G ++SG + + + L D+ ++
Sbjct: 25 ILALDLGTR-TGWAVLPRSGR----IASGVTEFRPGRFEGAGMAFLRFEKFLADLNRDAG 79
Query: 65 PEEAAV-EQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
P +A V E+V + +A G A P TIK+ G G+ K
Sbjct: 80 PFDAVVFEEVRAHAGTLAAQVYGGFLAHLTAWCERKAAPYLGVPVATIKRHATGKGNAPK 139
Query: 124 KQIHMMLKMLMPESFFKGKDA 144
+ + ++ K +
Sbjct: 140 EDVIRAVRAQGFL--PKDDNE 158
>gi|163798339|ref|ZP_02192265.1| hypothetical protein BAL199_00750 [alpha proteobacterium BAL199]
gi|159176396|gb|EDP60985.1| hypothetical protein BAL199_00750 [alpha proteobacterium BAL199]
Length = 171
Score = 51.8 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 35/148 (23%), Positives = 54/148 (36%), Gaps = 12/148 (8%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGT--IVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
++ +D G TGW + G ++SG R + LT++ +
Sbjct: 20 VLALDLGTT-TGWALRTPEG----LITSGIARFRPGRYDGGGMRYLRFTNWLTEIDRLSG 74
Query: 65 PEEAAV-EQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
P A E+V + A G A L +P + A TIK+ G G+ K
Sbjct: 75 PVAAIWFEEVRRHAGTDAAQVYGGLMATLTAWAELRGVPYAGAAVGTIKRHATGKGNAPK 134
Query: 124 KQIHMMLKMLMPESFFKGKD-AADALAI 150
M++ F D ADA+AI
Sbjct: 135 ---LAMIQAARARGFSPADDNEADAIAI 159
>gi|257468541|ref|ZP_05632635.1| hypothetical protein FulcA4_04319 [Fusobacterium ulcerans ATCC
49185]
gi|317062800|ref|ZP_07927285.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
gi|313688476|gb|EFS25311.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
Length = 251
Score = 51.8 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 27/143 (18%), Positives = 51/143 (35%), Gaps = 7/143 (4%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
++ ID TG N V TI S R ++ + L ++++ +
Sbjct: 104 VLSIDLSTTSTGIA----YSKNGTIVRWKTIKSD-YIDFRERGLEIVKQLVEILEKGMID 158
Query: 67 EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
+E V++ ++ KL + R + + + K + GV ++Q
Sbjct: 159 VVILEDVYLGLNSDVLTKLSEVRGMLTYHIKKLNLDLLLVPAVLWKHRIEGVPTHRQEQK 218
Query: 127 HMMLKMLM--PESFFKGKDAADA 147
M+K E D+ADA
Sbjct: 219 EFMMKKFFEYTEVEADSDDSADA 241
>gi|237711872|ref|ZP_04542353.1| predicted protein [Bacteroides sp. 9_1_42FAA]
gi|317474986|ref|ZP_07934255.1| hypothetical protein HMPREF1016_01234 [Bacteroides eggerthii
1_2_48FAA]
gi|229454567|gb|EEO60288.1| predicted protein [Bacteroides sp. 9_1_42FAA]
gi|316908889|gb|EFV30574.1| hypothetical protein HMPREF1016_01234 [Bacteroides eggerthii
1_2_48FAA]
Length = 161
Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats.
Identities = 31/164 (18%), Positives = 57/164 (34%), Gaps = 23/164 (14%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIV-SCVRQSLAFRLC-QLYEGLTDVIKNWR 64
++ +D TG+ +GT + ++ ++ L +++ +
Sbjct: 16 VLALDIA-THTGY---------FSLHEAGTWNFTESKRRNGNKMHGAFRTTLLSLLRRYG 65
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTI-KKAVIGVGHGDK 123
E V VN+ +L + R I + IP E+ + KK G GH K
Sbjct: 66 IRRVVAEDVSVNRHFYDMRRLSELRGILLEVCDELDIPEPEFVNPAVLKKWATGDGHATK 125
Query: 124 KQIHMMLKMLMPESFFKGKD--AADALAIAVCHAYHANSGYYKI 165
Q M+ D AADA CH ++ +++
Sbjct: 126 TQ---MVAACKDRYGIVPVDDNAADA-----CHLFYYYIRRHRL 161
>gi|294340227|emb|CAZ88599.1| putative Holliday junction resolvasome, endonuclease subunit
[Thiomonas sp. 3As]
Length = 166
Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats.
Identities = 32/147 (21%), Positives = 52/147 (35%), Gaps = 10/147 (6%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGT--IVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
I+ +D G + TGW ++ G ++SG+ R + +T+V ++
Sbjct: 17 ILALDLGTQ-TGWALLGRDG----AITSGSELFKPQRFDGGGMRYLRFKRWITEVKQSAD 71
Query: 65 -PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
E+V + A G A +IP TIKK G G+ K
Sbjct: 72 GLNAVFFEEVRRHAGVDAAHAYGGFMAHLTAWCEHHQIPYQGVPVGTIKKHATGRGNASK 131
Query: 124 KQIHMMLKMLMPESFFKGKDAADALAI 150
+ + + ADALAI
Sbjct: 132 DDMVAAARC--RGHAPADDNEADALAI 156
>gi|302520901|ref|ZP_07273243.1| conserved hypothetical protein [Streptomyces sp. SPB78]
gi|302429796|gb|EFL01612.1| conserved hypothetical protein [Streptomyces sp. SPB78]
Length = 197
Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats.
Identities = 30/145 (20%), Positives = 45/145 (31%), Gaps = 14/145 (9%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
R++G+D LR TG G+ I RL L + + + I
Sbjct: 25 RVVGLDLSLRCTGVA-----GEGWT----DVIRPASGMRGHPRLQFLLDAIGEAITGA-- 73
Query: 66 EEAAVEQVFVNKDAVA-TLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
+ +E L R +A + RIP + P+ G G G K
Sbjct: 74 DLVVIEGPSFGAGVKHRHEDLAGLRVMARHACWKRRIPYALVPPSCRALYATGRGSGSKG 133
Query: 125 QIHMMLKMLMPE--SFFKGKDAADA 147
+ + L D ADA
Sbjct: 134 AVRSAVADLFGIETEGRGRYDEADA 158
>gi|319404454|emb|CBI78057.1| conserved hypothetical protein [Bartonella rochalimae ATCC
BAA-1498]
Length = 116
Score = 50.6 bits (120), Expect = 6e-05, Method: Composition-based stats.
Identities = 24/106 (22%), Positives = 40/106 (37%), Gaps = 3/106 (2%)
Query: 46 AFRLCQLYEGLTDV-IKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVS 104
R + + L ++ + R + E+V + A G A +IP
Sbjct: 12 GMRYLRFKQWLNEIKLTAGRIDAVYFEEVRRHIGTDAAHVYGGLLATLTAWCEYYQIPYE 71
Query: 105 EYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESFFKGKDAADALAI 150
+TIKK G G+ K+++ + K + ADALAI
Sbjct: 72 GIPVSTIKKETTGKGNASKEEMIKAVCA--KGHAPKDDNEADALAI 115
>gi|223933579|ref|ZP_03625560.1| unknown phage protein [Streptococcus suis 89/1591]
gi|223897775|gb|EEF64155.1| unknown phage protein [Streptococcus suis 89/1591]
Length = 172
Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats.
Identities = 26/150 (17%), Positives = 51/150 (34%), Gaps = 15/150 (10%)
Query: 8 IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEG-----LTDVIKN 62
+ +D TGW + D + + SG ++S R + L + +
Sbjct: 6 LSLDVSTTGTGWAVFDGS----TLIQSGV-SKPKQKSFYERAKAIASELKTIQLRAIQEY 60
Query: 63 WRPEE-AAVE-QVFVNKDAVATLKLGQARAIAILSPALARIPVSEY--APNTIKKAVIGV 118
+P E VE + + +++K+G A + + + K +
Sbjct: 61 DKPFEDIVVEQNTVLGPNQQSSIKIGIATGVILGRLLSEEVYFVNVSTWRKYWKFSYKDR 120
Query: 119 GHGDKKQIHMMLKMLMPESFFKGKDAADAL 148
KQ +L +L + D ADA+
Sbjct: 121 SKKSMKQ-QSVLTVLREFNKQVKDDEADAI 149
>gi|139473504|ref|YP_001128220.1| phage membrane protein [Streptococcus pyogenes str. Manfredo]
gi|134271751|emb|CAM29984.1| putative phage membrane protein [Streptococcus pyogenes str.
Manfredo]
Length = 170
Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats.
Identities = 21/151 (13%), Positives = 46/151 (30%), Gaps = 15/151 (9%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVR------QSLAFRLCQLYEGLTDVI 60
++ +D TGW + + + SG + + + +A +L +
Sbjct: 5 VLSLDISTSGTGWALFKGSD----LIQSGVLKHKSKSYFERGRYMASQLRLIQSRALKKY 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEY--APNTIKKAVIGV 118
+ A + + + + LK+G I + + K +
Sbjct: 61 DCYFSTIAVEKNSVMGTNQQSMLKIGIVTGIILGGLIADNVVFINVSTWRKYWKFSYKDR 120
Query: 119 GHGD-KKQIHMMLKMLMPESFFKGKDAADAL 148
K Q ++ +S D ADA+
Sbjct: 121 SKKSMKLQSKTKVEQEFNKSVK--DDEADAI 149
>gi|94994706|ref|YP_602804.1| phage protein [Streptococcus pyogenes MGAS10750]
gi|94548214|gb|ABF38260.1| phage protein [Streptococcus pyogenes MGAS10750]
Length = 170
Score = 49.9 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/151 (18%), Positives = 50/151 (33%), Gaps = 17/151 (11%)
Query: 8 IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEG-----LTDVIKN 62
+ +D TGW I D + + SG ++S R + L + K+
Sbjct: 6 LSLDVSTTGTGWAIFDGS----TLIQSGA-SKPKQKSFYERAKSMTSELKTIQLRAIQKH 60
Query: 63 WRPEE-AAVE-QVFVNKDAVATLKLGQARAIAILSPALARIPVSEY--APNTIKKAVIGV 118
+P E +E + + +++K+G A I + I K +
Sbjct: 61 DKPFEDIVIEQNTVLGPNQQSSIKIGIATGIILGRLLAEEIYFVNVSTWRKYWKFSYKDR 120
Query: 119 GHGD-KKQIHMMLKMLMPESFFKGKDAADAL 148
KKQ + + D ADA+
Sbjct: 121 SKKSMKKQAINAVAAEFNKQVK--DDEADAI 149
>gi|237747831|ref|ZP_04578311.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
gi|229379193|gb|EEO29284.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
Length = 151
Score = 49.9 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 32/150 (21%), Positives = 52/150 (34%), Gaps = 8/150 (5%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M + + I+ ID G +TGW + G ++ GT +++ + +
Sbjct: 1 MNE-VNILAIDIG-TKTGWAKYERGGK----ITGGTQHFKPKKTERQAIRWARFKEWTQM 54
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
E V + +A G AI + IP IKK G G+
Sbjct: 55 ALDGVHIVYFEDVKAHAGVLAAHAYGGYLAILEMLCVTRNIPCHPVGVGVIKKYWTGKGN 114
Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADALAI 150
DK+ + K + ADALA+
Sbjct: 115 ADKEAMINEAKR--RGFNIVDDNHADALAL 142
>gi|21910664|ref|NP_664932.1| hypothetical protein SpyM3_1128 [Streptococcus pyogenes MGAS315]
gi|28876298|ref|NP_795506.1| hypothetical protein SpyM3_1128 [Streptococcus pyogenes phage
315.3]
gi|28895648|ref|NP_801998.1| hypothetical protein SPs0736 [Streptococcus pyogenes SSI-1]
gi|50914576|ref|YP_060548.1| unknown phage protein [Streptococcus pyogenes MGAS10394]
gi|21904866|gb|AAM79735.1| conserved hypothetical protein - phage-associated [Streptococcus
pyogenes MGAS315]
gi|28810897|dbj|BAC63831.1| conserved hypothetical protein (phage associated) [Streptococcus
pyogenes SSI-1]
gi|50903650|gb|AAT87365.1| unknown phage protein [Streptococcus pyogenes MGAS10394]
Length = 170
Score = 49.9 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/151 (18%), Positives = 50/151 (33%), Gaps = 17/151 (11%)
Query: 8 IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEG-----LTDVIKN 62
+ +D TGW I D + + SG ++S R + L + K+
Sbjct: 6 LSLDVSTTGTGWAIFDGS----TLIQSGA-SKPKQKSFYERAKSMASELKTIQLRAIQKH 60
Query: 63 WRPEE-AAVE-QVFVNKDAVATLKLGQARAIAILSPALARIPVSEY--APNTIKKAVIGV 118
+P E +E + + +++K+G A I + I K +
Sbjct: 61 DKPFEDIVIEQNTVLGPNQQSSIKIGIATGIILGRLLAEEIYFVNVSTWRKYWKFSYKDR 120
Query: 119 GHGD-KKQIHMMLKMLMPESFFKGKDAADAL 148
KKQ + + D ADA+
Sbjct: 121 SKKSMKKQAINAVAAEFNKQVK--DDEADAI 149
>gi|15675379|ref|NP_269553.1| hypothetical protein SPy_1473 [Streptococcus pyogenes M1 GAS]
gi|71911013|ref|YP_282563.1| phage protein [Streptococcus pyogenes MGAS5005]
gi|13622564|gb|AAK34274.1| conserved hypotehetical protein - phage associated [Streptococcus
pyogenes M1 GAS]
gi|71853795|gb|AAZ51818.1| phage protein [Streptococcus pyogenes MGAS5005]
Length = 170
Score = 49.5 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/151 (13%), Positives = 47/151 (31%), Gaps = 15/151 (9%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVR------QSLAFRLCQLYEGLTDVI 60
++ +D TGW + + + SG + + + +A +L +
Sbjct: 5 VLSLDISTSGTGWALFKGSD----LIQSGVLKHKSKSYFERGRYMASQLRLIQSRALKKY 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEY--APNTIKKAVIGV 118
+ A + + + + LK+G I + + K +
Sbjct: 61 DCYFSTIAVEKNSVMGPNQQSMLKIGIVTGIILGRLIADNVVFINVSTWRKYWKFSYKDR 120
Query: 119 GHGD-KKQIHMMLKMLMPESFFKGKDAADAL 148
K Q + ++ +S D ADA+
Sbjct: 121 SKKSMKLQSKIKVEQEFNKSVK--DDEADAI 149
>gi|91975509|ref|YP_568168.1| CRISPR-associated Cas5e family protein [Rhodopseudomonas
palustris BisB5]
gi|91681965|gb|ABE38267.1| CRISPR-associated endonuclease, Csn1 family [Rhodopseudomonas
palustris BisB5]
Length = 1064
Score = 49.5 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 1 MRK--SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGT 36
M + + RI+GID G+ GWG+++V + ++SG
Sbjct: 1 MSECVTRRILGIDLGIASCGWGVIEVGEASGSIIASGV 38
>gi|194303204|ref|YP_002014618.1| gp7 [Mycobacterium phage Phaedrus]
gi|194150936|gb|ACF33971.1| gp7 [Mycobacterium phage Phaedrus]
Length = 156
Score = 49.5 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/113 (16%), Positives = 36/113 (31%), Gaps = 3/113 (2%)
Query: 40 CVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSP-AL 98
+++ R+ ++ + + + + +E T +
Sbjct: 18 KSYAAMSRRIEKIADTVRAAMDGC--DLIVIEGPSFGSKGQHTHSRDWLWGKIFDAARVN 75
Query: 99 ARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESFFKGKDAADALAIA 151
IPV P+ K G G+ K + P+ G D ADAL +A
Sbjct: 76 WGIPVLVVTPSQRMKYATGKGNAQKDAVLAAAIKRWPDVEIDGNDQADALILA 128
>gi|265763460|ref|ZP_06092028.1| predicted protein [Bacteroides sp. 2_1_16]
gi|299145844|ref|ZP_07038912.1| putative crossover junction endodeoxyribonuclease RuvC [Bacteroides
sp. 3_1_23]
gi|263256068|gb|EEZ27414.1| predicted protein [Bacteroides sp. 2_1_16]
gi|298516335|gb|EFI40216.1| putative crossover junction endodeoxyribonuclease RuvC [Bacteroides
sp. 3_1_23]
Length = 166
Score = 49.5 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/110 (26%), Positives = 44/110 (40%), Gaps = 11/110 (10%)
Query: 50 CQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIP-VSEYAP 108
Y+ L + I+ + + E V V+K +A KL + R I L A +P
Sbjct: 56 KMFYDTLVEFIQKYNIKLIIAEDVCVSKHFIAARKLSEFRGILYLICAQLGLPEPKFINV 115
Query: 109 NTIKKAVIGVGHGDKKQIHMMLKMLMPESFFKGKD--AADALAIAVCHAY 156
+T+KK G G DKK M++ + D ADA H +
Sbjct: 116 STVKKWATGDGKADKK---KMIEYCIKRWNITPVDDNMADA-----THIF 157
>gi|251782551|ref|YP_002996853.1| phage protein [Streptococcus dysgalactiae subsp. equisimilis
GGS_124]
gi|242391180|dbj|BAH81639.1| phage protein [Streptococcus dysgalactiae subsp. equisimilis
GGS_124]
Length = 170
Score = 49.5 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/151 (13%), Positives = 44/151 (29%), Gaps = 15/151 (9%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVR------QSLAFRLCQLYEGLTDVI 60
++ +D TGW + + + SG + + +A +L +
Sbjct: 5 VLSLDISTSGTGWALFKGSD----LIQSGVLKHNSDSYFERGRYMASQLRLIQSRALKKY 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEY--APNTIKKAVIGV 118
A + + + + LK+G I + + K +
Sbjct: 61 DCHFSTIAVEKNSVMGPNQQSMLKIGIVTGIILGRLIADNVAFINVSTWRKHWKFSYKDR 120
Query: 119 GHGD-KKQIHMMLKMLMPESFFKGKDAADAL 148
K Q ++ +S D ADA+
Sbjct: 121 SKKSMKLQSKTKVEQEFNKSVK--DDEADAI 149
>gi|157311084|ref|YP_001469079.1| gp080 [Lactococcus phage KSY1]
gi|108861424|gb|ABG21623.1| gp080 [Lactococcus phage KSY1]
Length = 173
Score = 49.5 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/150 (18%), Positives = 51/150 (34%), Gaps = 9/150 (6%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+ +D TG+ D L + S +S A R+ + L +
Sbjct: 1 MRILALDYSSASTGFCWYDTEDGTLI-LDSIV---PEEESKADRIQNITYKLLRLPT--- 53
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P+ VE+V +A L + I + V P +K+ G +
Sbjct: 54 PDYMVVEEVKSMINADTLRTLLRGVGYTIGQLNVCYRDVEFVGPGQWRKSAWGKSPRKRD 113
Query: 125 QIHMMLKMLMPESFFK--GKDAADALAIAV 152
+ ++ + D A+AL I +
Sbjct: 114 DAKQLAMDMLWDWCIPYSNDDEAEALGIML 143
>gi|220923479|ref|YP_002498781.1| putative bacteriophage-like protein [Methylobacterium nodulans ORS
2060]
gi|219948086|gb|ACL58478.1| putative bacteriophage-related protein [Methylobacterium nodulans
ORS 2060]
Length = 172
Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/148 (20%), Positives = 45/148 (30%), Gaps = 10/148 (6%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYE-GLTDVIKNWR 64
+I+ +D R GW G + GT V R + L D+I
Sbjct: 5 KILTLDLATR-CGWAC-GAPGSEPTY---GTKVLPSTGEDIGRFADAFNTWLLDMITLEN 59
Query: 65 PEEAAVEQVFVNKDAV--ATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
P E + KL + + E ++KK G G D
Sbjct: 60 PALIVFEAPILAGQTTLATARKLTGLAWHTEFVCRVREVRCKEAHLQSVKKFFAGSGRAD 119
Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAI 150
K+ + + K D ADAL +
Sbjct: 120 KEAMIAAARRF--GWAPKTSDEADALGL 145
>gi|19746428|ref|NP_607564.1| hypothetical protein spyM18_1491 [Streptococcus pyogenes MGAS8232]
gi|19748629|gb|AAL98063.1| conserved hypothetical phage protein [Streptococcus pyogenes
MGAS8232]
Length = 170
Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/154 (16%), Positives = 46/154 (29%), Gaps = 21/154 (13%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVR--------QSLAFRLCQLYEGLTD 58
++ +D TGW + + + SG + + + RL Q L
Sbjct: 5 VLSLDISTSGTGWALFKGSD----LIQSGVLKHKSKSYFERGRYMASQLRLIQ-SRALKK 59
Query: 59 VIKNWRPEEAAVE-QVFVNKDAVATLKLGQARAIAILSPALARIPVSEY--APNTIKKAV 115
+ AVE + + + LK+G I + + K +
Sbjct: 60 YYCCF--STIAVEKNSVMGTNQQSMLKIGIVTGIILGRLIADNVAFINVSTWRKYWKFSY 117
Query: 116 IGVGHGD-KKQIHMMLKMLMPESFFKGKDAADAL 148
K Q ++ +S D ADA+
Sbjct: 118 KDRSKKSMKLQSKTKVEQEFNKSVK--DDEADAI 149
>gi|294674019|ref|YP_003574635.1| Csn1 family CRISPR-associated protein [Prevotella ruminicola 23]
gi|294472455|gb|ADE81844.1| CRISPR-associated protein, Csn1 family [Prevotella ruminicola 23]
Length = 1204
Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGT 36
RI+GID G GW IVD + V+ GT
Sbjct: 3 RILGIDTGTNSLGWAIVDKDENQYHLVAKGT 33
>gi|187477948|ref|YP_785972.1| phage protein [Bordetella avium 197N]
gi|115422534|emb|CAJ49059.1| phage protein [Bordetella avium 197N]
Length = 217
Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 31/149 (20%), Positives = 55/149 (36%), Gaps = 13/149 (8%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGT--IVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
I+ +D G +TG+ + G ++ GT + + + L+ +I +
Sbjct: 59 ILALDLG-TKTGYALRRRDGR----ITHGTEAFTPRASWTHGQKWQRYRAWLSRMITDHA 113
Query: 65 PEEAAVEQVFVNKDAV--ATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
A E V + + A G RA+ + I + +KK G G+ D
Sbjct: 114 VGIIAFEDVKAHGKSGVLAAHAYGGYRAMLEMVADQHNIELVPVGVGVVKKHWTGKGNAD 173
Query: 123 KKQIHMML-KMLMPESFFKGKDAADALAI 150
K M+ + + + ADALAI
Sbjct: 174 K---AAMVAQAKARGYRPETDNDADALAI 199
>gi|319938079|ref|ZP_08012479.1| hypothetical protein HMPREF9488_03315 [Coprobacillus sp. 29_1]
gi|319806985|gb|EFW03624.1| hypothetical protein HMPREF9488_03315 [Coprobacillus sp. 29_1]
Length = 189
Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/148 (17%), Positives = 52/148 (35%), Gaps = 10/148 (6%)
Query: 10 IDPGLRRTGWGIVDVAGDNLCF--VSSGTIVSCVRQSLAF----RLCQLYEGLTDVIKNW 63
+D TG I + + ++ I ++ + + L + +
Sbjct: 22 LDASTSNTGVVIYEEKSKRILLDDINLSKIKKPLQMKPEDFEKLKFGCIKNYLDTLKNQY 81
Query: 64 RPEEAAVEQVF-VNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
+E +F K ++ L + + P +P+ IKK + G GH
Sbjct: 82 FITGVYMEGIFIYPKRLKSSQTLLKLHGFLMS--YFIDTPQYFLSPSVIKKNITGDGHAK 139
Query: 123 KKQIHMMLKMLMPESFFKGKDAADALAI 150
K+ + +L L F +D +DA A+
Sbjct: 140 KETVREILG-LKYGYIFPNEDISDAFAL 166
>gi|302519903|ref|ZP_07272245.1| conserved hypothetical protein [Streptomyces sp. SPB78]
gi|302428798|gb|EFL00614.1| conserved hypothetical protein [Streptomyces sp. SPB78]
Length = 249
Score = 48.3 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/119 (21%), Positives = 47/119 (39%), Gaps = 9/119 (7%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+R+IG+D + TG + G I + RL + + + D + R
Sbjct: 68 VRVIGLDLSITSTGVCL--PDGTTYR------IKTRA-ADADRRLLHIRDAVADDLAEHR 118
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
P A +E + A A +G+ + + + +P + P T+K+ G+ DK
Sbjct: 119 PHLAVIEDLPTKMHAAALKIIGKLHGVVVGALLDTDVPYAYVPPATLKQFACDKGNADK 177
>gi|83309458|ref|YP_419722.1| hypothetical protein amb0359 [Magnetospirillum magneticum AMB-1]
gi|82944299|dbj|BAE49163.1| hypothetical protein [Magnetospirillum magneticum AMB-1]
Length = 170
Score = 48.3 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 32/147 (21%), Positives = 51/147 (34%), Gaps = 10/147 (6%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVR--QSLAFRLCQLYEGLTDVIKNWR 64
++ +D G TGW + G + SGT+ + R + L ++ +
Sbjct: 19 VLALDLGTT-TGWAMRLADGATV----SGTMEFRPGRFEGGGMRYLRFRSWLDHLLGGAK 73
Query: 65 -PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
E+V + A G A L IP TIK+ G G+ K
Sbjct: 74 GISAVYFEEVRRHAGTDAAHIFGGFLAHLTAWCELNHIPYQGVPVGTIKRHATGKGNAGK 133
Query: 124 KQIHMMLKMLMPESFFKGKDAADALAI 150
+ +K + + ADALAI
Sbjct: 134 DAVIAAMKA--RGFNPEDDNEADALAI 158
>gi|138896480|ref|YP_001126933.1| hypothetical protein GTNG_2843 [Geobacillus thermodenitrificans
NG80-2]
gi|134267993|gb|ABO68188.1| Putative phage protein [Geobacillus thermodenitrificans NG80-2]
Length = 186
Score = 48.3 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/123 (21%), Positives = 50/123 (40%), Gaps = 10/123 (8%)
Query: 4 SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+R +GIDP L TG I+ G + + I S R+ L + +T +
Sbjct: 23 PMRFVGIDPSL-HTGLVILSGQG---KIIEAKEI--SKDGSDPARMNALIQEVTYYV--- 73
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
+P++ + F L G + + +P + AP+ +KK G+ +K
Sbjct: 74 QPDDFVAIEGFGYASQRGFLLGGIGWGMRME-LYRRGVPYIDVAPSLVKKFAGAKGNANK 132
Query: 124 KQI 126
+++
Sbjct: 133 EKV 135
>gi|39653698|ref|NP_945263.1| hypothetical protein EJ-1p24 [Streptococcus phage EJ-1]
gi|38638866|emb|CAE82106.1| hypothetical protein [Streptococcus phage EJ-1]
Length = 171
Score = 48.3 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/150 (11%), Positives = 36/150 (24%), Gaps = 15/150 (10%)
Query: 8 IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFR------LCQLYEGLTDVIK 61
+ +D TGW + + V SG + + L +
Sbjct: 6 LSLDISTTATGWAVFHGSD----LVQSGVLKHKSKSFFERGRFMASELRAIQSRALQKYD 61
Query: 62 NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAP--NTIKKAVIGVG 119
+ + + + + +G I + + K +
Sbjct: 62 CHFESIVVEKNSVMGPNQQSMISIGIVTGIILGRLIADNVYFVNVWTWRKYWKFSYKDRS 121
Query: 120 HGD-KKQIHMMLKMLMPESFFKGKDAADAL 148
K Q + + D ADA+
Sbjct: 122 KKSMKLQAVAKVSDEFDLNVK--DDEADAI 149
>gi|172055189|ref|YP_001806516.1| hypothetical protein cce_5104 [Cyanothece sp. ATCC 51142]
gi|171701470|gb|ACB54450.1| hypothetical protein cce_5104 [Cyanothece sp. ATCC 51142]
Length = 70
Score = 48.3 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 10/63 (15%), Positives = 21/63 (33%), Gaps = 1/63 (1%)
Query: 91 IAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESFFKGKDAADALAI 150
+ L + P T K + D++ + +++ L DA+A+
Sbjct: 1 MVNLIAYRHGCLPTMIYPATWKSNL-DHPRADREDLTAIVEELFNLQSILLNQEVDAIAV 59
Query: 151 AVC 153
A
Sbjct: 60 AYT 62
>gi|196251057|ref|ZP_03149738.1| conserved hypothetical protein [Geobacillus sp. G11MC16]
gi|196209429|gb|EDY04207.1| conserved hypothetical protein [Geobacillus sp. G11MC16]
Length = 163
Score = 48.3 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 50/122 (40%), Gaps = 10/122 (8%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+R +GIDP L TG I+ G + + I S R+ L + +T + +
Sbjct: 1 MRFVGIDPSL-HTGLVILSGQG---KIIEAKEI--SKDGSDPARMNALIQEVTYYV---Q 51
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
P++ + F L G + + +P + AP+ +KK G+ +K+
Sbjct: 52 PDDFVAIEGFGYASQRGFLLGGIGWGMRME-LYRRGVPYIDVAPSLVKKFAGAKGNANKE 110
Query: 125 QI 126
++
Sbjct: 111 KV 112
>gi|53803175|ref|YP_115053.1| hypothetical protein MCA2649 [Methylococcus capsulatus str. Bath]
gi|53756936|gb|AAU91227.1| conserved hypothetical protein [Methylococcus capsulatus str. Bath]
Length = 158
Score = 47.9 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 27/135 (20%), Positives = 45/135 (33%), Gaps = 10/135 (7%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGT--IVSCVRQSLAFRLCQLYEGLTD 58
M + I+ +D G TGW + G ++SG+ + R + LT+
Sbjct: 1 MTTT--ILALDLGTT-TGWALRGGDG----HITSGSESFRPQRFEGGGMRFLRFKRWLTE 53
Query: 59 -VIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIG 117
E+V + A G A +IP TIKK G
Sbjct: 54 LKGHVDGIGALYFEEVRRHASTDAAHAYGGFLATLTAWCEHHQIPYQGVPVGTIKKHATG 113
Query: 118 VGHGDKKQIHMMLKM 132
G+ K+ + ++
Sbjct: 114 KGNAGKEGVIASVRA 128
>gi|317506645|ref|ZP_07964436.1| hypothetical protein HMPREF9336_00806 [Segniliparus rugosus ATCC
BAA-974]
gi|316255077|gb|EFV14356.1| hypothetical protein HMPREF9336_00806 [Segniliparus rugosus ATCC
BAA-974]
Length = 208
Score = 47.9 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 38/89 (42%)
Query: 67 EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
+E + A + + +PV+ AP+T+KK +G G+ K ++
Sbjct: 85 MIVIEDLSHVSAADSPQCRAHVWWELVNRLHCLGVPVAVCAPSTLKKFAVGTGNAKKLEV 144
Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHA 155
+ L PE K D ADA+ +A+ A
Sbjct: 145 FGAAQHLYPELVLKKDDEADAIFLALIGA 173
>gi|255020313|ref|ZP_05292381.1| hypothetical protein ACA_2131 [Acidithiobacillus caldus ATCC 51756]
gi|254970233|gb|EET27727.1| hypothetical protein ACA_2131 [Acidithiobacillus caldus ATCC 51756]
Length = 155
Score = 47.9 bits (113), Expect = 5e-04, Method: Composition-based stats.
Identities = 31/145 (21%), Positives = 50/145 (34%), Gaps = 6/145 (4%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDV-IKNWRP 65
I+ +D G+ TGW ++ G L S + + R + L D+
Sbjct: 5 ILALDLGIT-TGWALLGRDG--LISGGSESFRPQRFEGGGMRFLRFKRWLADIKRCADGI 61
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ E+V + A G A IP TIK+ G G+ +K +
Sbjct: 62 DWVVFEEVRKHAGVDAAHAYGGFLATLTSWCEHHGIPYQGVPVGTIKRHATGRGNANKAE 121
Query: 126 IHMMLKMLMPESFFKGKDAADALAI 150
+ K + ADALA+
Sbjct: 122 MIAAAKA--RGITPVDDNHADALAL 144
>gi|209884694|ref|YP_002288551.1| holliday junction resolvasome, endonuclease subunit [Oligotropha
carboxidovorans OM5]
gi|209872890|gb|ACI92686.1| holliday junction resolvasome, endonuclease subunit [Oligotropha
carboxidovorans OM5]
Length = 174
Score = 47.9 bits (113), Expect = 5e-04, Method: Composition-based stats.
Identities = 36/157 (22%), Positives = 52/157 (33%), Gaps = 12/157 (7%)
Query: 5 IRIIGIDPGL---RRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
+RI GI L TGW + N F TI + L L ++
Sbjct: 1 MRIDGIILSLDVATNTGWCAGEPGNPNPDF-GHFTIPPTGDDVGTYGLKY-SAWLKGQLE 58
Query: 62 NWRPEEAAVEQVFVNKD--AVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVG 119
+P E + K KL + ++ I V E +T+KK G G
Sbjct: 59 GLKPALVIFEAPILPKKTTPTTARKLMGLAMLTEMAARHRGITVREGRASTVKKHFTGNG 118
Query: 120 HGDKKQIHMMLKMLMPESFFKGKDAADALAI---AVC 153
K + + + D ADA A+ AVC
Sbjct: 119 WAKKADTMAIARR--YGWAVRTDDEADACALWAYAVC 153
>gi|162454552|ref|YP_001616919.1| crossover junction endodeoxyribonuclease ruvC [Sorangium
cellulosum 'So ce 56']
gi|161165134|emb|CAN96439.1| Crossover junction endodeoxyribonuclease ruvC [Sorangium
cellulosum 'So ce 56']
Length = 182
Score = 47.6 bits (112), Expect = 6e-04, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
++G DPG R GW +DV V SG + + L L ++ +RP
Sbjct: 4 IVLGFDPGAARVGWAALDVDAAGARHVGSGVLPVDLAGDPG--LEALRTAAGALLSRYRP 61
Query: 66 EEAAVEQVF 74
AVE+V
Sbjct: 62 ALVAVERVV 70
>gi|303237415|ref|ZP_07323981.1| putative CRISPR-associated protein, Csn1 family [Prevotella
disiens FB035-09AN]
gi|302482365|gb|EFL45394.1| putative CRISPR-associated protein, Csn1 family [Prevotella
disiens FB035-09AN]
Length = 795
Score = 47.2 bits (111), Expect = 7e-04, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCF 31
M K RI+G+DPG GW ++D +
Sbjct: 1 MEKQ-RILGLDPGTNSLGWAVLDFDNSKQEY 30
>gi|194015314|ref|ZP_03053930.1| conserved hypothetical protein [Bacillus pumilus ATCC 7061]
gi|194012718|gb|EDW22284.1| conserved hypothetical protein [Bacillus pumilus ATCC 7061]
Length = 163
Score = 47.2 bits (111), Expect = 8e-04, Method: Composition-based stats.
Identities = 30/148 (20%), Positives = 54/148 (36%), Gaps = 10/148 (6%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+R +GIDP +TG I D G+ + I + + + + +I
Sbjct: 1 MRFVGIDP-STKTGLVIQDANGN--VILDKEIISAVKGDP-----QRFMDLASQIINLIE 52
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILS-PALARIPVSEYAPNTIKKAVIGVGHGDK 123
P + + F A++ + I + +I + P T+KK G G+ K
Sbjct: 53 PNDFVCIEGFSYGSKGASVDIQYGIGWLIRARLINKKIDYVDVPPTTLKKFATGKGNVKK 112
Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIA 151
QI + + K + DA +A
Sbjct: 113 DQIPVPVYKRWGFEH-KSDNVIDAFVLA 139
>gi|318057461|ref|ZP_07976184.1| hypothetical protein SSA3_05943 [Streptomyces sp. SA3_actG]
gi|318076915|ref|ZP_07984247.1| hypothetical protein SSA3_09375 [Streptomyces sp. SA3_actF]
Length = 197
Score = 47.2 bits (111), Expect = 8e-04, Method: Composition-based stats.
Identities = 31/152 (20%), Positives = 53/152 (34%), Gaps = 19/152 (12%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
+IG+D L TG G+ I + + RL + + + I+ +
Sbjct: 28 VIGLDLSLTSTGVA-----GEGWT----DNIRT--KLPGDARLVHVIDTVKTFIR--SAD 74
Query: 67 EAAVEQVFVNKDAVATLK-LGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+E A+A + L R + IP + P+T+K V G G K +
Sbjct: 75 LVVMEGPAYGHAALAGHEDLAGLRVLVRTYCYRQGIPYAAVPPSTLKLYVAGYGKASKGE 134
Query: 126 IHMMLKMLMPE--SFFKGKDAADA---LAIAV 152
+ ++ D ADA +A A
Sbjct: 135 VRSAVRDRYGIECEGPARYDEADAYSLVAAAY 166
>gi|322412186|gb|EFY03094.1| phage protein [Streptococcus dysgalactiae subsp. dysgalactiae ATCC
27957]
Length = 170
Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 25/154 (16%), Positives = 46/154 (29%), Gaps = 21/154 (13%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVR--------QSLAFRLCQLYEGLTD 58
++ +D TGW + + + SG + + RL Q L
Sbjct: 5 VLSLDISTSGTGWALFKGSD----LIQSGVLKHKSDSYFERGRYMASQLRLIQ-SRALKK 59
Query: 59 VIKNWRPEEAAVE-QVFVNKDAVATLKLGQARAIAILSPALARIPVSEY--APNTIKKAV 115
++ AVE + + + LK+G I + + K +
Sbjct: 60 YDCSF--STIAVEKNSVMGPNQQSMLKIGIVTGIILGRLIADNVVFVNVSTWRKHWKFSY 117
Query: 116 IGVGHGD-KKQIHMMLKMLMPESFFKGKDAADAL 148
K Q ++ +S D ADA+
Sbjct: 118 KDRSKKSMKLQSKTKVEQEFNKSVK--DDEADAI 149
>gi|15674977|ref|NP_269151.1| hypothetical protein SPy_0962 [Streptococcus phage 370.3]
gi|13622123|gb|AAK33872.1| hypothetical protein - phage associated [Streptococcus phage 370.3]
Length = 170
Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 23/150 (15%), Positives = 46/150 (30%), Gaps = 13/150 (8%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVR------QSLAFRLCQLYEGLTDVI 60
++ +D TGW + + + SG + + + +A +L +
Sbjct: 5 VLSLDISTSGTGWALFKGSD----LIQSGVLKHKSKSYFERGRYMASQLGLIQSRALKKY 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
+ A + + + + LK+G I + + + K
Sbjct: 61 DCYFSTIAVEKNSVMGPNQQSMLKIGIVTGIILGRLIADNVAFINVST-WRKHWKFSYKD 119
Query: 121 GDKKQIHMMLKMLMPESFFKG--KDAADAL 148
KK + K E K D ADA+
Sbjct: 120 RSKKAMKAQSKEKALEYCGKTVKDDEADAI 149
>gi|282599459|ref|YP_003358349.1| N4 gp46-like protein [Pseudomonas phage LUZ7]
gi|259048558|emb|CAZ66208.1| N4 gp46-like protein [Pseudomonas phage LUZ7]
Length = 184
Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 32/170 (18%), Positives = 55/170 (32%), Gaps = 22/170 (12%)
Query: 1 MRKSIRIIGIDPGLRRTGWGI----VDVAGDNLCFVSSGTIVSCVRQSLAFRL----CQL 52
M K I ++G+DP L WGI +D + + F I + + R+
Sbjct: 1 MPK-INVLGMDPSLSN--WGIACGNLDTSTGLIEFKHVEVIQTSKSKDKQIRVNSADLLR 57
Query: 53 YEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALA-RIPVSEYAPNTI 111
E + + + P A+ A I +L+ A P T+
Sbjct: 58 VEPIAERLIELAPHAKAIFVEVPVGSQSADAMKSYGVCIGLLAYMRALGYPFFPVTAATL 117
Query: 112 KKAVIGVGHGDKKQIHM-MLKMLMPESFF---------KGKDAADALAIA 151
K K+++ K ++ K + ADA+A A
Sbjct: 118 KVHACNSATASKQEMIEWATKKYPDLNWPRQNGRVVANKSEHIADAIAAA 167
>gi|29135076|ref|NP_803706.1| ORF140 [Pseudomonas phage phiKZ]
gi|18996605|gb|AAL83041.1|AF399011_140 PHIKZ140 [Pseudomonas phage phiKZ]
Length = 187
Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 28/172 (16%), Positives = 56/172 (32%), Gaps = 28/172 (16%)
Query: 6 RIIGIDPGLRRTGWGIVD--VAGDNLCFVSSGTIVSCVRQSLAF-----------RLCQL 52
R++ +DPG + G I++ + G N ++ T R+ Q+
Sbjct: 12 RVLALDPGSQNLGIAILEDKLDGSNKVVRNAFTCHLKDTNPAYAAISEVHGSRFTRMQQM 71
Query: 53 YEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYA----- 107
+ + +++ +P VE ++ K A + L + + + Y
Sbjct: 72 SDVVLNILHTEKPHAVIVESNYLGKFAQSFAVLVECVTYVHRALYEYDRFIPLYMIDPTT 131
Query: 108 --PNTIKKAVIGVGHGDKKQIHMMLK-----MLMPESFFKGKDAADALAIAV 152
N K V G K + ++ + + DA AIA
Sbjct: 132 VKINAGMKKVKGT---TKDDVKEAMRSRTDITWNIDIDSLDDHSMDACAIAY 180
>gi|163867685|ref|YP_001608886.1| hypothetical protein Btr_0437 [Bartonella tribocorum CIP 105476]
gi|161017333|emb|CAK00891.1| phage-related conserved hypothetical protein [Bartonella tribocorum
CIP 105476]
Length = 149
Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 28/129 (21%), Positives = 48/129 (37%), Gaps = 8/129 (6%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGT--IVSCVRQSLAFRLCQLYEGLTD-VIKNW 63
I+ +D G +TGW I G F++S T S + R + + L++
Sbjct: 8 ILCLDLG-TKTGWAICGADG----FITSDTEHFQSRRFEGGGMRYLRFKKWLSELKRSVD 62
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
+ E+V + A G A +IP TIKK G G+ K
Sbjct: 63 EIDTVYFEEVRRHVGTDAAHVYGGFLATLTAWCEHHQIPYEGIPVGTIKKVTTGKGNASK 122
Query: 124 KQIHMMLKM 132
+++ ++
Sbjct: 123 EEMIKAMRA 131
>gi|152994801|ref|YP_001339636.1| RNA-binding S1 domain-containing protein [Marinomonas sp. MWYL1]
gi|150835725|gb|ABR69701.1| RNA binding S1 domain protein [Marinomonas sp. MWYL1]
Length = 720
Score = 45.6 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 17/81 (20%), Positives = 32/81 (39%), Gaps = 9/81 (11%)
Query: 6 RIIGIDPGLRRTGW--GIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
R++G+DPG R G ++D G + G I R + L+ +I+
Sbjct: 325 RVLGVDPGFRN-GVKLAVIDEQGS---LLDHGVIYPHG---PQNRTQEASTMLSQLIRKH 377
Query: 64 RPEEAAVEQVFVNKDAVATLK 84
A+ +++ A +K
Sbjct: 378 NIGWVAIGNGTASRETEALVK 398
>gi|23013774|ref|ZP_00053634.1| hypothetical protein Magn03008224 [Magnetospirillum magnetotacticum
MS-1]
Length = 155
Score = 45.6 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 32/147 (21%), Positives = 50/147 (34%), Gaps = 10/147 (6%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAF--RLCQLYEGLTDVIKNWR 64
I+ +D G GW + G + SGT+ + R + L + +
Sbjct: 4 ILALDLGSTA-GWAMRLADG----VIVSGTMEFRPGRFEGGGIRFLRFRSWLDHLEAGAK 58
Query: 65 -PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
VE+V + A G A L IP TIK+ G G+ K
Sbjct: 59 GIGTVYVEEVRRHAGTDAAHIYGGFLAHLTAWCELKHIPYQGVPVGTIKRHATGKGNAGK 118
Query: 124 KQIHMMLKMLMPESFFKGKDAADALAI 150
+ ++ + + ADALAI
Sbjct: 119 DAVIAAMRS--RGFNPEDDNEADALAI 143
>gi|296531891|ref|ZP_06894694.1| hypothetical protein HMPREF0731_0174 [Roseomonas cervicalis ATCC
49957]
gi|296267757|gb|EFH13579.1| hypothetical protein HMPREF0731_0174 [Roseomonas cervicalis ATCC
49957]
Length = 181
Score = 45.6 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 39/120 (32%), Gaps = 8/120 (6%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGT--IVSCVRQSLAFRLCQLYEGLTDVIKN-W 63
I+ +D G TGW + ++SG + R + + L ++ +
Sbjct: 30 ILALDLGTA-TGWA-LRFDTGR---ITSGVETFKPRRFEGGGMRYVRFVDWLVEIATHAH 84
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
E+V + A G A IP TIK+ G G+ DK
Sbjct: 85 GIGRLVFEEVRRHAGTDAAHVYGGFLATLTSWCEEHEIPYEGVPVGTIKRFATGRGNADK 144
>gi|94988445|ref|YP_596546.1| phage protein [Streptococcus phage 9429.2]
gi|94541953|gb|ABF32002.1| phage protein [Streptococcus phage 9429.2]
Length = 170
Score = 45.6 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/150 (15%), Positives = 46/150 (30%), Gaps = 13/150 (8%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVR------QSLAFRLCQLYEGLTDVI 60
++ +D TGW + + + SG + + + +A +L +
Sbjct: 5 VLSLDISTSGTGWALFKGSD----LIQSGVLKHKSKSYFERGRYMASQLGLIQSRALKKY 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
+ A + + + + LK+G I + + + K
Sbjct: 61 DCYFSTIAVEKNSVMEPNQQSMLKIGIVTGIILGRLIADNVAFINVST-WRKHWKFSYKD 119
Query: 121 GDKKQIHMMLKMLMPESFFKG--KDAADAL 148
KK + K E K D ADA+
Sbjct: 120 RSKKAMKAQSKEKALEYCGKTVKDDEADAI 149
>gi|58699244|ref|ZP_00374044.1| conserved hypothetical protein [Wolbachia endosymbiont of
Drosophila ananassae]
gi|225630512|ref|YP_002727303.1| hypothetical protein WRi_007630 [Wolbachia sp. wRi]
gi|58534237|gb|EAL58436.1| conserved hypothetical protein [Wolbachia endosymbiont of
Drosophila ananassae]
gi|225592493|gb|ACN95512.1| hypothetical protein WRi_007630 [Wolbachia sp. wRi]
Length = 156
Score = 45.6 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 28/140 (20%), Positives = 44/140 (31%), Gaps = 16/140 (11%)
Query: 17 TGW-----GIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW-RPEEAAV 70
TGW GIV G VS + L + + E
Sbjct: 10 TGWTILNDGIVQS-GSKSFHVS----RFSGG---GMQFLNFRNWLNSLKYKFPGIEVVYF 61
Query: 71 EQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMML 130
E+V + A G A + IP + TIK+ + G G+ K + +
Sbjct: 62 EEVRRHLGTDAAHIYGGFLAHLSAWCEESNIPYQGVSVKTIKRFITGKGNASKADVIEAV 121
Query: 131 KMLMPESFFKGKDAADALAI 150
+ + AD+LA+
Sbjct: 122 QK--KGFCPTDDNEADSLAL 139
>gi|23016417|ref|ZP_00056173.1| hypothetical protein Magn03010869 [Magnetospirillum magnetotacticum
MS-1]
Length = 155
Score = 45.3 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 31/147 (21%), Positives = 49/147 (33%), Gaps = 10/147 (6%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVR--QSLAFRLCQLYEGLTDVIKNWR 64
I+ +D G TGW + G + SGT+ + R + L + +
Sbjct: 4 ILALDLGST-TGWAMRLADG----IIVSGTMEFRPGRFEGGGMRFLRFRSWLDHLEAGAK 58
Query: 65 -PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
E+V + A G A L IP TIK+ G + K
Sbjct: 59 GIGTVYFEEVRRHAGTDAAHLYGGFVAHLAAWCELKHIPYQGVPVGTIKRHATGKSNAGK 118
Query: 124 KQIHMMLKMLMPESFFKGKDAADALAI 150
+ ++ + + ADALAI
Sbjct: 119 DAVIAAMRS--RGFNPEDDNEADALAI 143
>gi|325474387|gb|EGC77575.1| crossover junction endodeoxyribonuclease ruvC [Treponema denticola
F0402]
Length = 68
Score = 45.3 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 101 IPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESFFKGKD 143
+ V EYAPN+IKKAV G+ +K+Q+ +K+++ D
Sbjct: 1 MRVGEYAPNSIKKAVTGIAQAEKRQVQEAVKLILGLKEIPRPD 43
>gi|222825058|dbj|BAH22216.1| hypothetical protein [Wolbachia endosymbiont of Cadra cautella]
Length = 156
Score = 44.9 bits (105), Expect = 0.004, Method: Composition-based stats.
Identities = 28/140 (20%), Positives = 44/140 (31%), Gaps = 16/140 (11%)
Query: 17 TGW-----GIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW-RPEEAAV 70
TGW GIV G VS + L + + E
Sbjct: 10 TGWTILNDGIVQS-GSKSFHVS----RFSGG---GMQFLNFRNWLNSLKYKFPGIEVVYF 61
Query: 71 EQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMML 130
E+V + A G A + IP + TIK+ + G G+ K + +
Sbjct: 62 EEVRRHLGTDAAHIYGGFLAHLSAWCEESNIPYQGVSVKTIKRFITGKGNASKADVIEAV 121
Query: 131 KMLMPESFFKGKDAADALAI 150
+ + AD+LA+
Sbjct: 122 QE--KGFCPTDDNEADSLAL 139
>gi|99034325|ref|ZP_01314361.1| hypothetical protein Wendoof_01000837 [Wolbachia endosymbiont of
Drosophila willistoni TSC#14030-0811.24]
Length = 101
Score = 44.5 bits (104), Expect = 0.005, Method: Composition-based stats.
Identities = 18/86 (20%), Positives = 31/86 (36%), Gaps = 2/86 (2%)
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
E+V + A G A+ IP TIK+ + G G+ K
Sbjct: 4 ISAVYFEEVRRHLGTDAAHCYGGFLAVLSAWCEENNIPYQGVNVKTIKRFIAGKGNASKS 63
Query: 125 QIHMMLKMLMPESFFKGKDAADALAI 150
++ ++ + + ADALA+
Sbjct: 64 EVIEAIRE--KSFSPRDDNEADALAL 87
>gi|238027634|ref|YP_002911865.1| hypothetical protein bglu_1g20550 [Burkholderia glumae BGR1]
gi|237876828|gb|ACR29161.1| Hypothetical protein bglu_1g20550 [Burkholderia glumae BGR1]
Length = 179
Score = 44.5 bits (104), Expect = 0.005, Method: Composition-based stats.
Identities = 26/144 (18%), Positives = 45/144 (31%), Gaps = 13/144 (9%)
Query: 15 RRTGWGIVDVAGDNLCFVSSGTIVSCVR--QSLAFRLCQLYEGLTDVIKNW-RPEEAAVE 71
+ GW + ++ GT + R + L + E
Sbjct: 30 TQCGWAL-----SKGGVLTYGTKNFSAKRTDGPGQRWLKFRAMLGNHFAAAGEIHAIYYE 84
Query: 72 QVFVNK-----DAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
V + + +A G A + R+ + + T+KKA G G K+ +
Sbjct: 85 HVMAHGTKDHPNTIAAHVYGGFLAHLEAWCDVQRVRLVAVSVGTVKKAWTGNGKASKEAM 144
Query: 127 HMMLKMLMPESFFKGKDAADALAI 150
+ + D ADALAI
Sbjct: 145 IDEARRRGFRVGAEEDDTADALAI 168
>gi|295402332|ref|ZP_06812287.1| conserved hypothetical protein [Geobacillus thermoglucosidasius
C56-YS93]
gi|294975605|gb|EFG51228.1| conserved hypothetical protein [Geobacillus thermoglucosidasius
C56-YS93]
Length = 163
Score = 44.5 bits (104), Expect = 0.006, Method: Composition-based stats.
Identities = 30/146 (20%), Positives = 52/146 (35%), Gaps = 11/146 (7%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
R +GIDP LR TG+ + G + I R+ L + + D +
Sbjct: 5 RFVGIDPSLR-TGFVALSPYG---EVIEMKEIERDGDDP--ARMSDLIQAVVDAV--HDT 56
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+E + LG + IP + AP+ +KK G+ K+Q
Sbjct: 57 DFVAIEGFGYA--SQKGFLLGGIGWGIRIGLYRRGIPYVDVAPSLLKKFAGAKGNAKKEQ 114
Query: 126 IHMMLKMLMPESFFKGKDAADALAIA 151
+ + + + DA +A
Sbjct: 115 VVLEVYKRWGFEH-DSNNVTDAYVLA 139
>gi|34557790|ref|NP_907605.1| hypothetical protein WS1445 [Wolinella succinogenes DSM 1740]
gi|34483507|emb|CAE10505.1| conserved hypothetical protein [Wolinella succinogenes]
Length = 1059
Score = 44.1 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 17/105 (16%), Positives = 39/105 (37%), Gaps = 8/105 (7%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDN---LCFVSSGT-----IVSCVRQSLAFRLCQLYEGLT 57
RI+G+D G+ GW IV+ D+ + G + ++ + + G+
Sbjct: 4 RILGVDLGISSLGWAIVEYDKDDEAANRIIDCGVRLFTAAETPKKKESPNKARREARGIR 63
Query: 58 DVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIP 102
V+ R ++++F+ + + L + A +
Sbjct: 64 RVLNRRRVRMNMIKKLFLRAGLIQDVDLDGEGGMFYSKANRADVW 108
>gi|222825124|dbj|BAH22281.1| hypothetical protein [Wolbachia endosymbiont of Cadra cautella]
Length = 153
Score = 44.1 bits (103), Expect = 0.007, Method: Composition-based stats.
Identities = 22/139 (15%), Positives = 47/139 (33%), Gaps = 17/139 (12%)
Query: 17 TGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRL---CQLYEGLTDVIKNWRPEEAAVEQV 73
TGW ++ G + S + R + + + + + + +E V
Sbjct: 10 TGW----------TILNDGIVQSGSKSFHVSRFSGGGMQFLNFRNWLNSLKYKFPGIEVV 59
Query: 74 FVN--KDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLK 131
+ + + G A + IP + TIK+ + G G+ K + ++
Sbjct: 60 YFEEVRRHLGAHIYGGFLAHLSAWCEESNIPYQGVSVKTIKRFITGKGNASKADVIEAVQ 119
Query: 132 MLMPESFFKGKDAADALAI 150
+ AD+LA+
Sbjct: 120 E--KGFCPTDDNEADSLAL 136
>gi|170742227|ref|YP_001770882.1| putative bacteriophage-related protein [Methylobacterium sp. 4-46]
gi|168196501|gb|ACA18448.1| putative bacteriophage-related protein [Methylobacterium sp. 4-46]
Length = 170
Score = 43.7 bits (102), Expect = 0.008, Method: Composition-based stats.
Identities = 34/158 (21%), Positives = 53/158 (33%), Gaps = 13/158 (8%)
Query: 5 IR-IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYE-GLTDVIKN 62
+R I+ +D R GW G + GT V R + L D+I
Sbjct: 1 MRKILALDLATR-CGWAC-GAPGSEPTY---GTKVLPSTGEDIGRFADAFNTWLLDMITL 55
Query: 63 WRPEEAAVEQVFVNKDAVATLK---LGQARAIAILSPALARIPVSEYAPNTIKKAVIGVG 119
P E ++ G A + L ++ V E+ ++KK G G
Sbjct: 56 EDPGVVVFEAPVMSGTTSLAAARKLYGLAWHTE-FACRLRQVRVMEHHLQSVKKFFAGSG 114
Query: 120 HGDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYH 157
DK + + K +AADAL + C +
Sbjct: 115 RADKAAMIAAAER--QGWAPKDDNAADALGLWACAVHQ 150
>gi|42520153|ref|NP_966068.1| hypothetical protein WD0262 [Wolbachia endosymbiont of Drosophila
melanogaster]
gi|42409890|gb|AAS14002.1| conserved hypothetical protein, interruption-C [Wolbachia
endosymbiont of Drosophila melanogaster]
Length = 108
Score = 43.7 bits (102), Expect = 0.009, Method: Composition-based stats.
Identities = 21/87 (24%), Positives = 31/87 (35%), Gaps = 4/87 (4%)
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
E E+V + A G A IP TIK+ + G G+ K
Sbjct: 8 IEAVYFEEVRRHLGTDAAHCYGGFLAHLTAWCEENNIPYQGVPVKTIKRFITGKGNASKS 67
Query: 125 QIHMMLKMLMPESFFKGKD-AADALAI 150
++ +K + F D DALA+
Sbjct: 68 EVIEAVK---GKGFIPQDDNEGDALAL 91
>gi|320107286|ref|YP_004182876.1| Tex-like protein [Terriglobus saanensis SP1PR4]
gi|319925807|gb|ADV82882.1| Tex-like protein [Terriglobus saanensis SP1PR4]
Length = 750
Score = 43.7 bits (102), Expect = 0.009, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 11/69 (15%)
Query: 4 SIRIIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
I ++GIDPGLR TG IVD G F++ I R + + L V+K
Sbjct: 323 PISVLGIDPGLR-TGCKIAIVDETG---KFLAHDVIY-----PHTGRTNEATQKLDAVMK 373
Query: 62 NWRPEEAAV 70
+ A+
Sbjct: 374 SHNVRAIAI 382
>gi|328545673|ref|YP_004305782.1| polynucleotidyl transferase (phage related) [polymorphum gilvum
SL003B-26A1]
gi|326415413|gb|ADZ72476.1| Putative Polynucleotidyl transferase (Phage related) [Polymorphum
gilvum SL003B-26A1]
Length = 179
Score = 43.7 bits (102), Expect = 0.010, Method: Composition-based stats.
Identities = 30/147 (20%), Positives = 47/147 (31%), Gaps = 10/147 (6%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTI--VSCVRQSLAFRLCQLYEGLTDVIKNWR 64
I+ +D G TGW + G ++SGT+ R + L + +
Sbjct: 28 ILSLDLGTT-TGWALRSHDG----LITSGTVSFRPSRYDGGGMRYLRFRSWLDQIAADAG 82
Query: 65 -PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
E+V + A G A I TIK+ V G+ DK
Sbjct: 83 GLAAIYFEEVRRHVGTDAAHLYGGFLATLSAWCESHAIAYQGVPVGTIKRHVAAKGNADK 142
Query: 124 KQIHMMLKMLMPESFFKGKDAADALAI 150
+ + + ADA+AI
Sbjct: 143 AAVMA--AVRARGFSPADDNEADAIAI 167
>gi|270491024|ref|ZP_06208097.1| conserved hypothetical protein [Yersinia pestis KIM D27]
gi|270335005|gb|EFA45783.1| conserved hypothetical protein [Yersinia pestis KIM D27]
Length = 191
Score = 43.3 bits (101), Expect = 0.011, Method: Composition-based stats.
Identities = 34/169 (20%), Positives = 62/169 (36%), Gaps = 20/169 (11%)
Query: 1 MRKSIRIIGIDPGLRRTGWGI--VDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLY-EGLT 57
M K+IR++G+DP + G I +D+ D L + + + + ++ + L
Sbjct: 1 MSKTIRVVGVDPSMSNFGLAIGTLDLETDKLDIHGLTLVETETKAGGNKKTVRVNSDDLR 60
Query: 58 DVIKNWRPEEAAVEQVFVN----KDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKK 113
+ WR + +EQ + + + + I I A P+ + PN IK
Sbjct: 61 RANEIWRTAKPIIEQAHMVFCELPVGSQSSRAQTSYGICIGVLACVDKPLIQVTPNEIKH 120
Query: 114 AVIGVGHGDKKQIHMMLKMLMPESF-------------FKGKDAADALA 149
V K++I P + K + ADA+A
Sbjct: 121 YVGNKLTTSKEEIIQWATQKQPNAPWLRRKQSGKEVLVNKNEHLADAVA 169
>gi|169349750|ref|ZP_02866688.1| hypothetical protein CLOSPI_00488 [Clostridium spiroforme DSM
1552]
gi|169293825|gb|EDS75958.1| hypothetical protein CLOSPI_00488 [Clostridium spiroforme DSM
1552]
Length = 1116
Score = 43.3 bits (101), Expect = 0.013, Method: Composition-based stats.
Identities = 11/39 (28%), Positives = 21/39 (53%), Gaps = 7/39 (17%)
Query: 3 KSIRI-----IGIDPGLRRTGWGIVDVAGDNLCFVSSGT 36
K ++I +G+D G+ G+G++D+ + FV G
Sbjct: 7 KEMKIMGRLVLGLDIGITSVGYGVIDIDKN--EFVDYGV 43
>gi|327398794|ref|YP_004339663.1| hypothetical protein Hipma_0634 [Hippea maritima DSM 10411]
gi|327181423|gb|AEA33604.1| hypothetical protein Hipma_0634 [Hippea maritima DSM 10411]
Length = 158
Score = 42.9 bits (100), Expect = 0.013, Method: Composition-based stats.
Identities = 24/150 (16%), Positives = 48/150 (32%), Gaps = 21/150 (14%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
I+ DPG + + + L I + +S +L + L +
Sbjct: 2 ILACDPGTKHCAFAL--YKDGKL-------IATYKVKSTFDKLKGFFSALNIKNYIF--- 49
Query: 67 EAAVEQVFVNKDAVATLKLGQARAIAILSP-ALARIPVSEYAPNTIKKAVIG-VGHGDKK 124
+E ++N + L + RA + P ++ ++G ++
Sbjct: 50 --VIEDQYLNLNVRTLKALVEIRATVLTLARIYNASNCIVVPPQKWQRTMLGVHIKSKRE 107
Query: 125 QIHMMLKML----MPESFFKGKDAADALAI 150
Q L + + K D ADA+ I
Sbjct: 108 Q-RKNASRLAASEIAKEKVKDSDVADAICI 136
>gi|260429804|ref|ZP_05783780.1| holliday junction resolvasome, endonuclease subunit [Citreicella
sp. SE45]
gi|260419287|gb|EEX12541.1| holliday junction resolvasome, endonuclease subunit [Citreicella
sp. SE45]
Length = 173
Score = 42.9 bits (100), Expect = 0.014, Method: Composition-based stats.
Identities = 32/147 (21%), Positives = 51/147 (34%), Gaps = 10/147 (6%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGT--IVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
I+ +D G TGW + G ++SGT R + LT++ +
Sbjct: 22 ILALDLG-TSTGWALRSPEG----LITSGTASFRPGRYDGGGMRYLRFTNWLTEIDRLSG 76
Query: 65 PEEAAV-EQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
P A E+V + A G A L +P + TIK+ G G+ K
Sbjct: 77 PIAAIWFEEVRRHAGTDAAHVYGGLMATLTAWAELRGVPYAGVPVGTIKRHATGKGNAPK 136
Query: 124 KQIHMMLKMLMPESFFKGKDAADALAI 150
+ + ADA+A+
Sbjct: 137 AAMIA--AARARGFSPADDNEADAIAL 161
>gi|225869622|ref|YP_002745569.1| phage protein [Streptococcus equi subsp. equi 4047]
gi|225699026|emb|CAW92129.1| hypothetical phage protein [Streptococcus equi subsp. equi 4047]
Length = 170
Score = 42.9 bits (100), Expect = 0.014, Method: Composition-based stats.
Identities = 25/165 (15%), Positives = 48/165 (29%), Gaps = 18/165 (10%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVR------QSLAFRLCQLYEGLTDVI 60
++ +D TGW + + + SG + + +A +L +
Sbjct: 5 VLSLDISTSGTGWALFKGSD----LIQSGVLKHKSDSYFERGRYMASQLRAIQSRALKKY 60
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEY--APNTIKKAVIGV 118
A + + + + LK+G I + + K +
Sbjct: 61 DCSFSTIAVEKNSVMGPNQQSMLKIGIVTGIILGRLIADNVVFINVSTWRKHWKFSYKDR 120
Query: 119 G-HGDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGY 162
K Q + D ADA+ + AY+ N GY
Sbjct: 121 SKKAMKAQSKAKAAENFGKIVK--DDEADAV---LIGAYYVNQGY 160
>gi|189426995|ref|YP_001950094.1| RuvC_resolvase like protein [Ralstonia phage RSL1]
gi|189233307|dbj|BAG41664.1| RuvC_resolvase like protein [Ralstonia phage RSL1]
Length = 200
Score = 42.9 bits (100), Expect = 0.016, Method: Composition-based stats.
Identities = 18/118 (15%), Positives = 40/118 (33%), Gaps = 14/118 (11%)
Query: 4 SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAF---RLCQLYEGLTDVI 60
+IR++ DPG R G V + +++ +IV+ L + + +
Sbjct: 25 TIRVLSFDPGSRNFGISCVATKNGKVRVMAN-SIVTNPIFDLTRFEVQKKTFLAEIGQWV 83
Query: 61 KNWRPEEAAVEQVFVNKDAVATLKLGQARAIA--ILSPALARIPVSE--YAPNTIKKA 114
+ ++P+ E+ G I + + A ++ + K A
Sbjct: 84 ELYKPQALIAERF------QTRGIGGPLIEIVTTMNALVSAHFGLNTLLIVASQWKLA 135
>gi|319650103|ref|ZP_08004252.1| hypothetical protein HMPREF1013_00857 [Bacillus sp. 2_A_57_CT2]
gi|317398284|gb|EFV78973.1| hypothetical protein HMPREF1013_00857 [Bacillus sp. 2_A_57_CT2]
Length = 193
Score = 42.9 bits (100), Expect = 0.016, Method: Composition-based stats.
Identities = 33/161 (20%), Positives = 55/161 (34%), Gaps = 25/161 (15%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+R +GIDP +TG+ +D G+ L + V R+ L + I +
Sbjct: 1 MRFVGIDPSS-KTGFVALDEHGEVLRAKEL----TGVSDEDPRRMVTLINEVVAHI---K 52
Query: 65 P-EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKA--VIGV--- 118
P + +E D + G ++ E APN +KK V G
Sbjct: 53 PGDFICIEGFPF--DTQKAMFAGGLHHGIRNELFKRKLDYYEVAPNAVKKFVNVTGWVGE 110
Query: 119 --------GHGDKKQIHMMLKMLMPESFFKGKDAADALAIA 151
G KK + ++ + K + DA +A
Sbjct: 111 KGSKKRLTGPQKKKVVMAAVQEHFGFTH-KSDNVVDAYVLA 150
>gi|322412541|gb|EFY03449.1| hypothetical protein SDD27957_09250 [Streptococcus dysgalactiae
subsp. dysgalactiae ATCC 27957]
Length = 170
Score = 42.6 bits (99), Expect = 0.018, Method: Composition-based stats.
Identities = 27/153 (17%), Positives = 46/153 (30%), Gaps = 19/153 (12%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVR--------QSLAFRLCQLYEGLTD 58
++ +D TGW + + + SG + + RL Q L
Sbjct: 5 VLSLDISTSGTGWALFKGSD----LIQSGVLKHTSDSYFERGRYMASQLRLIQ-SRALKK 59
Query: 59 VIKNWRPEEAAVE-QVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIG 117
++ AVE + + + LK+G I + + + K
Sbjct: 60 YDCSF--STIAVEKNSVMGPNQQSMLKIGIVTGIILGRLIADNVAFINVST-WRKHWKFS 116
Query: 118 VGHGDKKQIHMMLKMLMPESFFKG--KDAADAL 148
KK + K E K D ADA+
Sbjct: 117 YKDRSKKAMKAQSKEKALEYCGKTVKDDEADAI 149
>gi|225872519|ref|YP_002753974.1| S1 RNA binding domain protein [Acidobacterium capsulatum ATCC
51196]
gi|225793377|gb|ACO33467.1| S1 RNA binding domain protein [Acidobacterium capsulatum ATCC
51196]
Length = 753
Score = 42.6 bits (99), Expect = 0.019, Method: Composition-based stats.
Identities = 20/116 (17%), Positives = 44/116 (37%), Gaps = 16/116 (13%)
Query: 4 SIRIIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
I ++GIDPGLR TG +VD G ++ I + + + + + +I+
Sbjct: 323 PISVLGIDPGLR-TGCKMAVVDETG---KLLAHDVIYPHTSK---HGIAEAQQKVEALIR 375
Query: 62 NWRPEEAAV-------EQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNT 110
+ A+ E ++ + K+ + ++ + + S+ A
Sbjct: 376 QHQVRAIAIGNGTASRETDAFVREFMREKKIQEIFSVTVSEAGASVYSASDVARQE 431
>gi|326804572|ref|YP_004327443.1| putative uncharacterised protein [Salmonella phage Vi01]
gi|301795222|emb|CBW37940.1| putative uncharacterised protein [Salmonella phage Vi01]
Length = 203
Score = 42.6 bits (99), Expect = 0.019, Method: Composition-based stats.
Identities = 18/128 (14%), Positives = 45/128 (35%), Gaps = 14/128 (10%)
Query: 36 TIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVN--KDAVATLKLGQARAIAI 93
+ +S R + + V+ +P+ +E + K++ + + ++
Sbjct: 54 ILRQPKYESPEERFYNISKWAEAVLLTEKPDFITLEGYAMGNSKNSNNICQTAENTSLLK 113
Query: 94 LSPALARIPVSEYAPNTIKKAVIGVGHGDK-------KQIH--MM--LKMLMPESFFKG- 141
+ + P+ +KK G G+ DK +++ M + ++ K
Sbjct: 114 QAMRRNNMEFQIVTPSFVKKHFCGKGNADKLVMIDHFEKLFNVKMRGIMDMLDVKDPKPI 173
Query: 142 KDAADALA 149
D D+ A
Sbjct: 174 DDLVDSFA 181
>gi|18466788|ref|NP_569595.1| hypothetical protein HCM2.0123c [Salmonella enterica subsp.
enterica serovar Typhi str. CT18]
gi|16506104|emb|CAD09990.1| hypothetical protein [Salmonella enterica subsp. enterica serovar
Typhi str. CT18]
Length = 189
Score = 42.6 bits (99), Expect = 0.020, Method: Composition-based stats.
Identities = 34/168 (20%), Positives = 60/168 (35%), Gaps = 20/168 (11%)
Query: 1 MRKSIRIIGIDPGLRRTGWGI--VDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTD 58
M K+IR++G+DP + G I +D+ D L + + + + + L
Sbjct: 1 MSKTIRVVGVDPSMSNFGLAIGTLDLETDKLDIHGLTLVETKAGGN-KKTVRVNSDDLRR 59
Query: 59 VIKNWRPEEAAVEQVFVN----KDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKA 114
+ WR + +EQ + + + + I I A P+ + PN IK
Sbjct: 60 ANEIWRTAKPIIEQTHMVFCELPVGSQSSRAQTSYGICIGVLACVDKPLIQVTPNEIKHY 119
Query: 115 VIGVGHGDKKQIHMMLKMLMPESF-------------FKGKDAADALA 149
V K++I P + K + ADA+A
Sbjct: 120 VGNKLTTSKEEIIQWATQKQPNAPWLRRKQSGKEVLVNKNEHLADAVA 167
>gi|299137090|ref|ZP_07030273.1| Tex-like protein-like protein [Acidobacterium sp. MP5ACTX8]
gi|298601605|gb|EFI57760.1| Tex-like protein-like protein [Acidobacterium sp. MP5ACTX8]
Length = 752
Score = 42.2 bits (98), Expect = 0.023, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 11/66 (16%)
Query: 7 IIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
++GIDPGLR TG IVD G F++ I R + + L ++
Sbjct: 326 VLGIDPGLR-TGCKIAIVDETG---KFLAHDVIY-----PHTGRTTEATQKLAALVAKHN 376
Query: 65 PEEAAV 70
A+
Sbjct: 377 VRAIAI 382
>gi|88798566|ref|ZP_01114150.1| Transcriptional accessory protein [Reinekea sp. MED297]
gi|88778666|gb|EAR09857.1| Transcriptional accessory protein [Reinekea sp. MED297]
Length = 775
Score = 42.2 bits (98), Expect = 0.023, Method: Composition-based stats.
Identities = 27/112 (24%), Positives = 41/112 (36%), Gaps = 16/112 (14%)
Query: 8 IGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
IG+DPGLR TG VD G + G I R+ + + L + +
Sbjct: 326 IGLDPGLR-TGVKVACVDATG---KVLDHGAIFP---TPPQNRIKEAEQVLVAMCAKYNV 378
Query: 66 EEAAV-------EQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNT 110
E A+ E KD + +A+A+ + + SEYA
Sbjct: 379 ELIAIGNGTASRETERFVKDMLKNYPQIKAQAVVVNESGASIYSASEYAARE 430
>gi|285019384|ref|YP_003377095.1| resolvase (endonuclease) protein [Xanthomonas albilineans GPE PC73]
gi|283474602|emb|CBA17102.1| putative resolvase (endonuclease) protein [Xanthomonas albilineans]
Length = 118
Score = 42.2 bits (98), Expect = 0.024, Method: Composition-based stats.
Identities = 21/98 (21%), Positives = 31/98 (31%), Gaps = 3/98 (3%)
Query: 54 EGLTDVIKNWRPEEAA-VEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIK 112
L +V+ P E+V + A G +IP TIK
Sbjct: 13 RWLNEVLSTANPIHTVYFEEVRRHAGVDAAHAYGGFMGHLTAWCEHHQIPYQGVPVGTIK 72
Query: 113 KAVIGVGHGDKKQIHMMLKMLMPESFFKGKDAADALAI 150
K G G+ K + + + ADALA+
Sbjct: 73 KHATGKGNAGKDDMIASARR--RGHTPIDDNQADALAL 108
>gi|31795214|ref|NP_857674.1| hypothetical protein YPKMT037 [Yersinia pestis KIM]
gi|2996318|gb|AAC13198.1| unknown [Yersinia pestis KIM 10]
Length = 195
Score = 42.2 bits (98), Expect = 0.024, Method: Composition-based stats.
Identities = 34/168 (20%), Positives = 60/168 (35%), Gaps = 20/168 (11%)
Query: 1 MRKSIRIIGIDPGLRRTGWGI--VDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTD 58
M K+IR++G+DP + G I +D+ D L + + + + + L
Sbjct: 1 MSKTIRVVGVDPSMSNFGLAIGTLDLETDKLDIHGLTLVETKAGGN-KKTVRVNSDDLRR 59
Query: 59 VIKNWRPEEAAVEQVFVN----KDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKA 114
+ WR + +EQ + + + + I I A P+ + PN IK
Sbjct: 60 ANEIWRTAKPIIEQAHMVFCELPVGSQSSRAQTSYGICIGVLACVDKPLIQVTPNEIKHY 119
Query: 115 VIGVGHGDKKQIHMMLKMLMPESF-------------FKGKDAADALA 149
V K++I P + K + ADA+A
Sbjct: 120 VGNKLTTSKEEIIQWATQKQPNAPWLRRKQSGKEVLVNKNEHLADAVA 167
>gi|90425961|ref|YP_534331.1| hypothetical protein RPC_4489 [Rhodopseudomonas palustris BisB18]
gi|90107975|gb|ABD90012.1| CRISPR-associated endonuclease, Csn1 family [Rhodopseudomonas
palustris BisB18]
Length = 1066
Score = 42.2 bits (98), Expect = 0.024, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
Query: 1 MRKSI--RIIGIDPGLRRTGWGIVDVA 25
M + + RI+GID G+ GWG+VD++
Sbjct: 1 MSERVVRRILGIDLGIASCGWGVVDIS 27
>gi|16082823|ref|NP_395377.1| hypothetical protein YPMT1.38c [Yersinia pestis CO92]
gi|31795342|ref|NP_857794.1| hypothetical protein Y1010 [Yersinia pestis KIM]
gi|45478635|ref|NP_995491.1| hypothetical protein YP_pMT048 [Yersinia pestis biovar Microtus
str. 91001]
gi|108793571|ref|YP_636721.1| hypothetical protein YPA_MT0039 [Yersinia pestis Antiqua]
gi|108793773|ref|YP_636611.1| hypothetical protein YPN_MT0041 [Yersinia pestis Nepal516]
gi|149192758|ref|YP_001293989.1| hypothetical protein YPE_4275 [Yersinia pestis CA88-4125]
gi|167466704|ref|ZP_02331408.1| hypothetical protein YpesF_02170 [Yersinia pestis FV-1]
gi|229896976|ref|ZP_04512135.1| hypothetical protein YPS_4820 [Yersinia pestis Pestoides A]
gi|229897737|ref|ZP_04512892.1| hypothetical protein YPH_4770 [Yersinia pestis biovar Orientalis
str. PEXU2]
gi|229900313|ref|ZP_04515448.1| hypothetical protein YPF_4840 [Yersinia pestis biovar Orientalis
str. India 195]
gi|229904836|ref|ZP_04519946.1| hypothetical protein YP516_4677 [Yersinia pestis Nepal516]
gi|294502027|ref|YP_003565764.1| hypothetical protein YPZ3_pMT0035 [Yersinia pestis Z176003]
gi|3883012|gb|AAC82672.1| unknown [Yersinia pestis KIM 10]
gi|5834723|emb|CAB55220.1| hypothetical protein YPMT1.38c [Yersinia pestis CO92]
gi|45357288|gb|AAS58682.1| hypothetical protein YP_pMT048 [Yersinia pestis biovar Microtus
str. 91001]
gi|108777837|gb|ABG20355.1| hypothetical protein YPN_MT0041 [Yersinia pestis Nepal516]
gi|108782118|gb|ABG16175.1| hypothetical protein YPA_MT0039 [Yersinia pestis Antiqua]
gi|148872416|gb|ABR14905.1| hypothetical protein YPMT1.38c [Yersinia pestis CA88-4125]
gi|229678151|gb|EEO74257.1| hypothetical protein YP516_4677 [Yersinia pestis Nepal516]
gi|229686672|gb|EEO78753.1| hypothetical protein YPF_4840 [Yersinia pestis biovar Orientalis
str. India 195]
gi|229693318|gb|EEO83368.1| hypothetical protein YPH_4770 [Yersinia pestis biovar Orientalis
str. PEXU2]
gi|229700012|gb|EEO88052.1| hypothetical protein YPS_4820 [Yersinia pestis Pestoides A]
gi|262363921|gb|ACY60640.1| hypothetical protein YPD4_pMT0035 [Yersinia pestis D106004]
gi|262364077|gb|ACY64413.1| hypothetical protein YPD8_pMT0035 [Yersinia pestis D182038]
gi|294352498|gb|ADE66554.1| hypothetical protein YPZ3_pMT0035 [Yersinia pestis Z176003]
gi|320017563|gb|ADW01133.1| hypothetical protein YPC_4805 [Yersinia pestis biovar Medievalis
str. Harbin 35]
Length = 189
Score = 42.2 bits (98), Expect = 0.026, Method: Composition-based stats.
Identities = 34/168 (20%), Positives = 60/168 (35%), Gaps = 20/168 (11%)
Query: 1 MRKSIRIIGIDPGLRRTGWGI--VDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTD 58
M K+IR++G+DP + G I +D+ D L + + + + + L
Sbjct: 1 MSKTIRVVGVDPSMSNFGLAIGTLDLETDKLDIHGLTLVETKAGGN-KKTVRVNSDDLRR 59
Query: 59 VIKNWRPEEAAVEQVFVN----KDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKA 114
+ WR + +EQ + + + + I I A P+ + PN IK
Sbjct: 60 ANEIWRTAKPIIEQAHMVFCELPVGSQSSRAQTSYGICIGVLACVDKPLIQVTPNEIKHY 119
Query: 115 VIGVGHGDKKQIHMMLKMLMPESF-------------FKGKDAADALA 149
V K++I P + K + ADA+A
Sbjct: 120 VGNKLTTSKEEIIQWATQKQPNAPWLRRKQSGKEVLVNKNEHLADAVA 167
>gi|185178893|ref|ZP_02964664.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 5
str. ATCC 27817]
gi|188024465|ref|ZP_02997113.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 7
str. ATCC 27819]
gi|188518212|ref|ZP_03003749.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 11
str. ATCC 33695]
gi|188524430|ref|ZP_03004450.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 12
str. ATCC 33696]
gi|198273747|ref|ZP_03206281.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 4
str. ATCC 27816]
gi|209554216|ref|YP_002284789.1| hypothetical protein UUR10_0396 [Ureaplasma urealyticum serovar 10
str. ATCC 33699]
gi|225551390|ref|ZP_03772336.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 8
str. ATCC 27618]
gi|184209150|gb|EDU06193.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 5
str. ATCC 27817]
gi|188018574|gb|EDU56614.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 7
str. ATCC 27819]
gi|188998010|gb|EDU67107.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 11
str. ATCC 33695]
gi|195659963|gb|EDX53343.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 12
str. ATCC 33696]
gi|198249502|gb|EDY74284.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 4
str. ATCC 27816]
gi|209541717|gb|ACI59946.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 10
str. ATCC 33699]
gi|225379205|gb|EEH01570.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 8
str. ATCC 27618]
Length = 225
Score = 41.8 bits (97), Expect = 0.031, Method: Composition-based stats.
Identities = 27/167 (16%), Positives = 44/167 (26%), Gaps = 34/167 (20%)
Query: 7 IIGIDPGLRRTGWGIVD-----------VAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEG 55
+IGID TG I+ N + + I +L L +
Sbjct: 5 VIGIDLSTTITGVAILRNEQIIKTFAVAFDNFNEKNLYNNVIRLIKEINLNVWLLADDD- 63
Query: 56 LTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAI----LSPALARIPVSEYAPNTI 111
+E + + T + + I + N
Sbjct: 64 ----------YYIGIEVANFS-NPKLTQRFSIYAGMIIALMSQVLRDFNAEFKMFNANAW 112
Query: 112 KKAV----IGVGHGDKKQIHM--MLKMLMPESFFKGKDAADALAIAV 152
+ + D+K I M+K +D DALAIA
Sbjct: 113 QLKIPQIQYNTLRKDRKLITKNLMIKT-FNIKSNLNEDEYDALAIAY 158
>gi|13357714|ref|NP_077988.1| hypothetical protein UU157 [Ureaplasma parvum serovar 3 str. ATCC
700970]
gi|170762238|ref|YP_001752240.1| hypothetical protein UPA3_0165 [Ureaplasma parvum serovar 3 str.
ATCC 27815]
gi|14195374|sp|Q9PQY7|Y157_UREPA RecName: Full=Uncharacterized protein UU157
gi|11345911|pir||F82928 hypothetical protein UU157 [imported] - Ureaplasma urealyticum
gi|6899117|gb|AAF30563.1|AE002115_15 unique hypothetical [Ureaplasma parvum serovar 3 str. ATCC 700970]
gi|168827815|gb|ACA33077.1| conserved hypothetical protein [Ureaplasma parvum serovar 3 str.
ATCC 27815]
Length = 225
Score = 41.8 bits (97), Expect = 0.031, Method: Composition-based stats.
Identities = 27/167 (16%), Positives = 44/167 (26%), Gaps = 34/167 (20%)
Query: 7 IIGIDPGLRRTGWGIVD-----------VAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEG 55
+IGID TG I+ N + + I +L L +
Sbjct: 5 VIGIDLSTTITGVAILRNEQIIKTFAVAFDNFNEKNLYNNVIRLIKEINLNVWLLADDD- 63
Query: 56 LTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAI----LSPALARIPVSEYAPNTI 111
+E + + T + + I + N
Sbjct: 64 ----------YYIGIEVANFS-NPKLTQRFSIYAGMIIALMSQVLRDFNAEFKMFNANAW 112
Query: 112 KKAV----IGVGHGDKKQIHM--MLKMLMPESFFKGKDAADALAIAV 152
+ + D+K I M+K +D DALAIA
Sbjct: 113 QLKIPQIQYNTLRKDRKLITKNLMIKT-FNIKSNLNEDEYDALAIAY 158
>gi|52788094|ref|YP_093922.1| hypothetical protein pG8786_042 [Yersinia pestis]
gi|145597236|ref|YP_001154700.1| hypothetical protein YPDSF_4072 [Yersinia pestis Pestoides F]
gi|52538023|emb|CAG27448.1| hypothetical protein [Yersinia pestis]
gi|145213004|gb|ABP42409.1| hypothetical protein YPDSF_4072 [Yersinia pestis Pestoides F]
Length = 189
Score = 41.8 bits (97), Expect = 0.031, Method: Composition-based stats.
Identities = 34/168 (20%), Positives = 60/168 (35%), Gaps = 20/168 (11%)
Query: 1 MRKSIRIIGIDPGLRRTGWGI--VDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTD 58
M K+IR++G+DP + G I +D+ D L + + + + + L
Sbjct: 1 MSKTIRVVGVDPSMSNFGLAIGTLDLETDKLDIHGLTLVETKAGGN-KKTVRVNSDDLRR 59
Query: 59 VIKNWRPEEAAVEQVFVN----KDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKA 114
+ WR + +EQ + + + + I I A P+ + PN IK
Sbjct: 60 ANEIWRTAKPIIEQAHMVFCELPVGSQSSRAQTSYGICIGVLACVDKPLIQVTPNEIKNY 119
Query: 115 VIGVGHGDKKQIHMMLKMLMPESF-------------FKGKDAADALA 149
V K++I P + K + ADA+A
Sbjct: 120 VGNKLTTSKEEIIQWATQKQPNAPWLRRKQSGKEVLVNKNEHLADAVA 167
>gi|319405079|emb|CBI78683.1| conserved hypothetical protein [Bartonella sp. AR 15-3]
Length = 89
Score = 41.8 bits (97), Expect = 0.032, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 28/77 (36%), Gaps = 2/77 (2%)
Query: 74 FVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKML 133
V D A G A +IP TIKKA G G+ K+++ +
Sbjct: 4 HVGTDTDAAHIYGGFLATLTAWCEHHQIPHEGIPVGTIKKATTGKGNASKEEMIEAMCS- 62
Query: 134 MPESFFKGKDAADALAI 150
+ ADALAI
Sbjct: 63 -KGHAPCDDNEADALAI 78
>gi|297528626|ref|YP_003669901.1| hypothetical protein GC56T3_0256 [Geobacillus sp. C56-T3]
gi|297251878|gb|ADI25324.1| hypothetical protein GC56T3_0256 [Geobacillus sp. C56-T3]
Length = 166
Score = 41.8 bits (97), Expect = 0.033, Method: Composition-based stats.
Identities = 25/121 (20%), Positives = 46/121 (38%), Gaps = 10/121 (8%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
R +GIDP LR TG+ + G + + I R+ +L + + V
Sbjct: 5 RFVGIDPSLR-TGFVALSPLG---EVIEAKEIE--KEGDDPARMSELIQAV--VDSVHDT 56
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+E L G + + I + AP+ +KK G+ +K++
Sbjct: 57 DFVAIEGFGYA-SQRGFLLGGIGWGMRME-LYRRGIQYIDVAPSLVKKFAGAKGNANKEK 114
Query: 126 I 126
+
Sbjct: 115 V 115
>gi|218508891|ref|ZP_03506769.1| Holliday junction resolvase [Rhizobium etli Brasil 5]
Length = 64
Score = 41.8 bits (97), Expect = 0.037, Method: Composition-based stats.
Identities = 42/61 (68%), Positives = 50/61 (81%)
Query: 106 YAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGYYKI 165
YAPN +KKAVIGVGHG+K QIHMMLK+LMP+ FKG DAADALAIA+CHA++ S +
Sbjct: 1 YAPNAVKKAVIGVGHGEKHQIHMMLKILMPKVEFKGDDAADALAIAICHAHNRGSNRMRQ 60
Query: 166 A 166
A
Sbjct: 61 A 61
>gi|196249492|ref|ZP_03148189.1| hypothetical protein G11MC16DRAFT_1946 [Geobacillus sp. G11MC16]
gi|196210786|gb|EDY05548.1| hypothetical protein G11MC16DRAFT_1946 [Geobacillus sp. G11MC16]
Length = 222
Score = 41.4 bits (96), Expect = 0.039, Method: Composition-based stats.
Identities = 29/146 (19%), Positives = 54/146 (36%), Gaps = 11/146 (7%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
R +GIDP LR TG+ + G + + I R+ +L + + V
Sbjct: 60 RFVGIDPSLR-TGFVALSPFG---EVIEAKEIEREGDDP--ARMSELIQAV--VDSVHDT 111
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+E L G + + IP + AP+ +KK G+ +K++
Sbjct: 112 DFVAIEGFGYA-SQRGFLLGGIGWGMRME-LYRRGIPYIDVAPSLLKKFAGAKGNANKEK 169
Query: 126 IHMMLKMLMPESFFKGKDAADALAIA 151
+ + + + DA +A
Sbjct: 170 VVLEVYKRWGFES-DSNNVVDAFILA 194
>gi|19745770|ref|NP_606906.1| hypothetical protein spyM18_0735 [Streptococcus pyogenes MGAS8232]
gi|139474127|ref|YP_001128843.1| hypothetical protein SpyM51303 [Streptococcus pyogenes str.
Manfredo]
gi|306827702|ref|ZP_07460976.1| phage protein [Streptococcus pyogenes ATCC 10782]
gi|19747911|gb|AAL97405.1| hypothetical phage protein [Streptococcus pyogenes MGAS8232]
gi|134272374|emb|CAM30630.1| hypothetical phage protein [Streptococcus pyogenes str. Manfredo]
gi|304430103|gb|EFM33138.1| phage protein [Streptococcus pyogenes ATCC 10782]
Length = 170
Score = 41.4 bits (96), Expect = 0.039, Method: Composition-based stats.
Identities = 26/150 (17%), Positives = 42/150 (28%), Gaps = 13/150 (8%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAF-RLCQLYEGLTDVI----K 61
++ +D TGW + + SG + R L
Sbjct: 5 VLSLDISTSGTGWALFKGSD----LFQSGVLKHNSDSYFERGRYMASQLRLIQSRALKKY 60
Query: 62 NWRPEEAAVE-QVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
+ R AVE + + + LK+G I + + + K
Sbjct: 61 DCRFSTIAVEKNSVMGPNQQSMLKIGIVTGIILGRLIADNVVFINVST-WRKHWKFSYKD 119
Query: 121 GDKKQIHMMLKMLMPESFFKG--KDAADAL 148
KK + K E K D ADA+
Sbjct: 120 RSKKAMKAQSKEKALEYCGKTVKDDEADAI 149
>gi|186701824|ref|ZP_02971494.1| conserved hypothetical protein [Ureaplasma parvum serovar 6 str.
ATCC 27818]
gi|186701111|gb|EDU19393.1| conserved hypothetical protein [Ureaplasma parvum serovar 6 str.
ATCC 27818]
Length = 227
Score = 41.4 bits (96), Expect = 0.042, Method: Composition-based stats.
Identities = 28/157 (17%), Positives = 47/157 (29%), Gaps = 14/157 (8%)
Query: 7 IIGIDPGLRRTGWGIVDVAG-DNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
+IGID TG I+ V+ + RL + + L +
Sbjct: 5 VIGIDLSTTITGVAILKNEQLVKTFAVAFDNFDEKNLYNNVLRLVKEIK-LNIWLLPDDS 63
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSP--------ALARIPVSEYAPNTIKKAVIG 117
+E + + T + + I A ++ + I +
Sbjct: 64 YYTGIEVANFS-NPKLTQRFSIYAGMIIALMSQILKEFNAEFKMFNANAWQLKIPQIQYN 122
Query: 118 VGHGDKKQIHM--MLKMLMPESFFKGKDAADALAIAV 152
D+K I M+K +D DALAIA
Sbjct: 123 TLRKDRKLITKNLMIKT-FNVKSTLNEDEYDALAIAY 158
>gi|307944537|ref|ZP_07659877.1| crossover junction endodeoxyribonuclease RuvC [Roseibium sp.
TrichSKD4]
gi|307772286|gb|EFO31507.1| crossover junction endodeoxyribonuclease RuvC [Roseibium sp.
TrichSKD4]
Length = 97
Score = 41.4 bits (96), Expect = 0.042, Method: Composition-based stats.
Identities = 35/60 (58%), Positives = 46/60 (76%)
Query: 99 ARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHA 158
A + V+EYAPN +KK V+G GH +K QI M+K+LMP++ F DAADALAIA+CHA+H
Sbjct: 25 AGLSVAEYAPNLVKKTVVGTGHAEKDQIRAMVKVLMPKAVFNSDDAADALAIAICHAHHR 84
>gi|301116926|ref|XP_002906191.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262107540|gb|EEY65592.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 306
Score = 41.4 bits (96), Expect = 0.047, Method: Composition-based stats.
Identities = 21/161 (13%), Positives = 44/161 (27%), Gaps = 20/161 (12%)
Query: 2 RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVR-----QSLAFRLCQLYEGL 56
+R++G+D TG+ IV G + G I + + + +L +
Sbjct: 33 SPPLRVLGLDVNTNSTGFAIVTERGRVCRW---GHIPTAQFPSAEVMHIGGAVDELLADV 89
Query: 57 TDVIKNWRPE---EAAVEQVF-----VNKDAVATLKLGQARAIAILSPALARIPVSEYAP 108
+P+ +E +L Q I + + +
Sbjct: 90 HAAELQQQPDAQWVVGIEAFMRMFRSGRFHNAGIFQLAQLNGIVSFACWKRFDVLPLHTH 149
Query: 109 NTIKKAVIG----VGHGDKKQIHMMLKMLMPESFFKGKDAA 145
+ + G K I + + + AA
Sbjct: 150 PSAARGFFGLSAPTSKSKKTSIKHQVMSFLEQQEPDLTQAA 190
>gi|254481001|ref|ZP_05094247.1| S1 RNA binding domain protein [marine gamma proteobacterium
HTCC2148]
gi|214038796|gb|EEB79457.1| S1 RNA binding domain protein [marine gamma proteobacterium
HTCC2148]
Length = 772
Score = 41.4 bits (96), Expect = 0.049, Method: Composition-based stats.
Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 9/72 (12%)
Query: 8 IGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
IG+DPGLR TG ++D G + G I R+ + L +I+ +
Sbjct: 328 IGLDPGLR-TGVKVAVIDANG---KVLDHGAIFPN---PPQKRIQEAGATLLHMIRQHKV 380
Query: 66 EEAAVEQVFVNK 77
E A+ +
Sbjct: 381 ELIAIGNGTAGR 392
>gi|41582344|gb|AAS07958.1| S1 RNA binding domain protein [uncultured marine bacterium 463]
Length = 772
Score = 41.4 bits (96), Expect = 0.049, Method: Composition-based stats.
Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 9/72 (12%)
Query: 8 IGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
IG+DPGLR TG ++D G + G I R+ + L +I+ +
Sbjct: 328 IGLDPGLR-TGVKVAVIDANG---KVLDHGAIFPN---PPQKRIQEAGATLLHMIRQHKV 380
Query: 66 EEAAVEQVFVNK 77
E A+ +
Sbjct: 381 ELIAIGNGTAGR 392
>gi|160700716|ref|YP_001552396.1| gp67 [Mycobacterium phage Giles]
gi|159136666|gb|ABW88462.1| gp67 [Mycobacterium phage Giles]
Length = 230
Score = 41.0 bits (95), Expect = 0.049, Method: Composition-based stats.
Identities = 27/164 (16%), Positives = 51/164 (31%), Gaps = 20/164 (12%)
Query: 7 IIGIDPGLRRTGWGIV--DVAGDNL------CFVSSGTIVSCVRQSLAFRLCQLYEGLTD 58
++G+D L G +V D D + G R ++
Sbjct: 31 VVGLDLSLTSAGIAVVSDDRQADRMGVAWPWHLRCCGE-TGSKDDDYRRRSRRVRRQSAA 89
Query: 59 VIKNWRP----EEAAVEQVFVNKD-AVATLKLGQARAIAILSPALARIPVSEYAPNTIKK 113
V++ P + A +E + + + ++P++ +P
Sbjct: 90 VMRLLEPAGHIDLAVIEGPIYGGNFMPSYFDRAALFHAVYGALDSRKVPIAVISPTAGHV 149
Query: 114 AVIGVGHGDKK------QIHMMLKMLMPESFFKGKDAADALAIA 151
G G K I ++ L+P+ D ADAL +A
Sbjct: 150 FTTGKGSLPKDPKRLKGLILDSVRALVPDVHVANDDIADALGLA 193
>gi|282880052|ref|ZP_06288774.1| CRISPR-associated protein, Csn1 family [Prevotella timonensis
CRIS 5C-B1]
gi|281306166|gb|EFA98204.1| CRISPR-associated protein, Csn1 family [Prevotella timonensis
CRIS 5C-B1]
Length = 1218
Score = 41.0 bits (95), Expect = 0.053, Method: Composition-based stats.
Identities = 16/87 (18%), Positives = 31/87 (35%), Gaps = 11/87 (12%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVA--GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTD 58
M K RI+G+D G GW +VD + + G ++ ++ +G+
Sbjct: 1 MNK--RILGLDTGTNSLGWAVVDWDEHAQSYELIKYGDVIFQEG-------VKIEKGIES 51
Query: 59 VIKNWRPEEAAVEQVFVNKDAVATLKL 85
R A+ + + + L
Sbjct: 52 SKAAERSGYKAIRKQYFRRRLRKIQVL 78
>gi|282878504|ref|ZP_06287286.1| CRISPR-associated protein, Csn1 family [Prevotella buccalis ATCC
35310]
gi|281299376|gb|EFA91763.1| CRISPR-associated protein, Csn1 family [Prevotella buccalis ATCC
35310]
Length = 1218
Score = 41.0 bits (95), Expect = 0.053, Method: Composition-based stats.
Identities = 16/87 (18%), Positives = 31/87 (35%), Gaps = 11/87 (12%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVA--GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTD 58
M K RI+G+D G GW +VD + + G ++ ++ +G+
Sbjct: 1 MNK--RILGLDTGTNSLGWAVVDWDEHAQSYELIKYGDVIFQEG-------VKIEKGIES 51
Query: 59 VIKNWRPEEAAVEQVFVNKDAVATLKL 85
R A+ + + + L
Sbjct: 52 SKAAERSGYKAIRKQYFRRRLRKIQVL 78
>gi|239502690|ref|ZP_04662000.1| hypothetical protein AbauAB_10287 [Acinetobacter baumannii AB900]
Length = 200
Score = 41.0 bits (95), Expect = 0.056, Method: Composition-based stats.
Identities = 29/141 (20%), Positives = 50/141 (35%), Gaps = 20/141 (14%)
Query: 5 IRI--IGIDPGLRRTGWGI--VDVAGDN--LCFVSSGTIVS----------CVRQSLAFR 48
++I IGIDP LR G + +D++ D+ + R
Sbjct: 1 MKIKAIGIDPSLRNFGLVVAEIDISNDDYPFEIKDMMLAQTESSKETKKTVRKNSDDLRR 60
Query: 49 LCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAP 108
L++G+ +I + A VE ++ A A G I P P+ + P
Sbjct: 61 AKILHDGMMHMINKHKVTFAFVEIPTGSQTARAMSSYGICIGILSACPV----PMIQLTP 116
Query: 109 NTIKKAVIGVGHGDKKQIHMM 129
+K A G+ K ++
Sbjct: 117 FEVKLAGTGIKTATKHEMIEA 137
>gi|296446027|ref|ZP_06887976.1| CRISPR-associated protein, Csn1 family [Methylosinus
trichosporium OB3b]
gi|296256386|gb|EFH03464.1| CRISPR-associated protein, Csn1 family [Methylosinus
trichosporium OB3b]
Length = 1082
Score = 41.0 bits (95), Expect = 0.058, Method: Composition-based stats.
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTI 37
+R++G+D G+ GW ++++ N +S GTI
Sbjct: 1 MRVLGLDAGIASLGWALIEIEESNRGELSQGTI 33
>gi|48697447|ref|YP_024832.1| Pas46 [Actinoplanes phage phiAsp2]
gi|47679665|gb|AAT36794.1| Pas46 [Actinoplanes phage phiAsp2]
Length = 164
Score = 41.0 bits (95), Expect = 0.058, Method: Composition-based stats.
Identities = 27/143 (18%), Positives = 56/143 (39%), Gaps = 12/143 (8%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
++++G+D + +TG V G V I + RL ++ + + + +
Sbjct: 1 MKVVGLDLSMTQTGVC-HTVEGAACWHV----IKPKRVKD--ARLPEIVDQVLEYVTGA- 52
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
+ A +E + + G + I L A IP + P+++KK G G K
Sbjct: 53 -DLALLEMLP--PNMKGAGITGMVQGIVRLELQRAGIPYGDIGPSSLKKYATGKGGASKT 109
Query: 125 QIHMMLKMLMPESFFKGKDAADA 147
++ + + + +A DA
Sbjct: 110 EMALA-ALTRGGAEISNDNACDA 131
>gi|293411955|ref|ZP_06654680.1| conserved hypothetical protein [Escherichia coli B354]
gi|309797909|ref|ZP_07692290.1| conserved hypothetical protein [Escherichia coli MS 145-7]
gi|220980070|emb|CAP72262.1| Hypothetical protein [Escherichia coli LF82]
gi|291469510|gb|EFF11999.1| conserved hypothetical protein [Escherichia coli B354]
gi|308118517|gb|EFO55779.1| conserved hypothetical protein [Escherichia coli MS 145-7]
gi|323934218|gb|EGB30642.1| hypothetical protein ERCG_04379 [Escherichia coli E1520]
Length = 189
Score = 41.0 bits (95), Expect = 0.059, Method: Composition-based stats.
Identities = 31/175 (17%), Positives = 59/175 (33%), Gaps = 29/175 (16%)
Query: 1 MRKSIRIIGIDPGLRRTGWGI--VDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTD 58
M K I ++G+DP + G + +D+ D L + + + + + L
Sbjct: 1 MSKKISVVGVDPSMSNFGLAVGTLDLETDELEIHGLTLVETKAGSN-KKTVRVNSDDLRR 59
Query: 59 VIKNWRP--------EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNT 110
+ WR E ++++ + G + A P+ + PN
Sbjct: 60 ASEIWRVAKPIIDKANMVFCELPVGSQNSRSQTSYGICIGV----LACVDKPLIQVTPNE 115
Query: 111 IKKAVIGVGHGDKKQIHMMLKMLMPESF-------------FKGKDAADALAIAV 152
IK V K++I P++ K + ADA+A A+
Sbjct: 116 IKHFVGNKLTTSKEEIIQWATKKHPKAPWLRRKQSGQDVLVNKNEHLADAVA-AI 169
>gi|302390897|ref|YP_003826717.1| Tex-like protein [Acetohalobium arabaticum DSM 5501]
gi|302202974|gb|ADL11652.1| Tex-like protein [Acetohalobium arabaticum DSM 5501]
Length = 718
Score = 41.0 bits (95), Expect = 0.063, Method: Composition-based stats.
Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 9/67 (13%)
Query: 6 RIIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
R++GIDPG R TG +VD G+ +++ I ++ + E L ++I +
Sbjct: 318 RVLGIDPGFR-TGSKVAVVDEIGN---LLATAAIYP---HPPQKKVSEAKEQLEELITEY 370
Query: 64 RPEEAAV 70
+ A+
Sbjct: 371 NVDLIAI 377
>gi|134298988|ref|YP_001112484.1| RNA-binding S1 domain-containing protein [Desulfotomaculum reducens
MI-1]
gi|134051688|gb|ABO49659.1| RNA binding S1 domain protein [Desulfotomaculum reducens MI-1]
Length = 724
Score = 40.6 bits (94), Expect = 0.065, Method: Composition-based stats.
Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 9/67 (13%)
Query: 6 RIIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
++G+DP R TG W +VD G + G I ++ + ++ ++ +
Sbjct: 320 IVLGLDPAYR-TGCKWAVVDNTG---KLLEVGVIYP---TPPQKKIQEARAEISRLVDKY 372
Query: 64 RPEEAAV 70
+ A+
Sbjct: 373 EIDIIAI 379
>gi|307594227|ref|YP_003900544.1| hypothetical protein Vdis_0078 [Vulcanisaeta distributa DSM 14429]
gi|307549428|gb|ADN49493.1| Protein of unknown function DUF460 [Vulcanisaeta distributa DSM
14429]
Length = 652
Score = 40.6 bits (94), Expect = 0.068, Method: Composition-based stats.
Identities = 30/146 (20%), Positives = 49/146 (33%), Gaps = 36/146 (24%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
I+GIDPG+ TG ++D+ G+ + ++L+ R L V + P
Sbjct: 257 IVGIDPGI-VTGVAVLDLNGN--------VLTLQSGKNLSRR-----HVLRIVYQYGTPV 302
Query: 67 EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
AV+ K + KL I Y + +K +I
Sbjct: 303 LIAVDT---AKPSDYAKKLAAMVGAVI-----------YYPDRDLSI-------AEKSEI 341
Query: 127 HMMLKMLMPESFFKGKDAADALAIAV 152
+ + + K DALA A
Sbjct: 342 AIKISREQGIAV-KDPHMRDALAAAY 366
>gi|260172929|ref|ZP_05759341.1| CRISPR-associated endonuclease Csn1 family protein [Bacteroides
sp. D2]
gi|315921212|ref|ZP_07917452.1| crispr-associated endonuclease csn1 family protein [Bacteroides
sp. D2]
gi|313695087|gb|EFS31922.1| crispr-associated endonuclease csn1 family protein [Bacteroides
sp. D2]
Length = 1510
Score = 40.6 bits (94), Expect = 0.074, Method: Composition-based stats.
Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 7/47 (14%)
Query: 6 RIIGIDPGLRRTGWGIVDVA-------GDNLCFVSSGTIVSCVRQSL 45
RI+G+D G GW +VD G + + G + + +
Sbjct: 3 RILGLDLGTNSIGWALVDSEEQRILGMGSRIIPMDQGVLDTFSGGNP 49
>gi|313892334|ref|ZP_07825926.1| conserved hypothetical protein [Dialister microaerophilus UPII
345-E]
gi|313119193|gb|EFR42393.1| conserved hypothetical protein [Dialister microaerophilus UPII
345-E]
Length = 144
Score = 40.6 bits (94), Expect = 0.076, Method: Composition-based stats.
Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 13/72 (18%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
I+ IDPG +TG +V G+ V I + L E + + K +
Sbjct: 2 ILSIDPGSEKTGIAVVKKDGN---LVMKKIIKTE----------CLEEEIKILSKKFEII 48
Query: 67 EAAVEQVFVNKD 78
E A+ +K+
Sbjct: 49 ETAIGNGTHHKN 60
>gi|251795620|ref|YP_003010351.1| hypothetical protein Pjdr2_1596 [Paenibacillus sp. JDR-2]
gi|247543246|gb|ACT00265.1| hypothetical protein Pjdr2_1596 [Paenibacillus sp. JDR-2]
Length = 190
Score = 40.2 bits (93), Expect = 0.088, Method: Composition-based stats.
Identities = 34/163 (20%), Positives = 52/163 (31%), Gaps = 22/163 (13%)
Query: 4 SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSS-GTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
+R +GIDP +TG ++ GD + V G + +L L L +I
Sbjct: 1 MVRFVGIDPA-TKTGVVALNERGDVVLEVELKGAGKAEKGGITIAQLVDLENQLYQII-- 57
Query: 63 WRP-EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKA--VIGV- 118
P +E +EQ + G + E P KK V G
Sbjct: 58 -EPGDETVIEQAAAG--TQKGITTGMVHGGLRSIIHRKGLVYHEINPLQTKKYVGVTGWK 114
Query: 119 GHGD----------KKQIHMMLKMLMPESFFKGKDAADALAIA 151
G K+ + ++ L K + DA IA
Sbjct: 115 GEAGSKVRLKDKEKKEAVGKAVQELFGYRH-KSDNVVDAYIIA 156
>gi|323702560|ref|ZP_08114223.1| Tex-like protein [Desulfotomaculum nigrificans DSM 574]
gi|323532534|gb|EGB22410.1| Tex-like protein [Desulfotomaculum nigrificans DSM 574]
Length = 713
Score = 40.2 bits (93), Expect = 0.092, Method: Composition-based stats.
Identities = 13/66 (19%), Positives = 28/66 (42%), Gaps = 9/66 (13%)
Query: 7 IIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
++G+DP R TG W +VD G + G I ++ + + ++ ++
Sbjct: 315 VLGLDPAYR-TGCKWAVVDATG---KLLEVGVIYP---TPPQNKVAESRTEIIRLVDKYK 367
Query: 65 PEEAAV 70
+ A+
Sbjct: 368 VDIIAI 373
>gi|167628523|ref|YP_001679022.1| hypothetical protein HM1_0392 [Heliobacterium modesticaldum Ice1]
gi|167591263|gb|ABZ83011.1| conserved domain protein [Heliobacterium modesticaldum Ice1]
Length = 729
Score = 40.2 bits (93), Expect = 0.094, Method: Composition-based stats.
Identities = 21/100 (21%), Positives = 35/100 (35%), Gaps = 14/100 (14%)
Query: 1 MRKSI---RIIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEG 55
M+ I R++GIDPG R TG W + G + G I R +
Sbjct: 315 MQPPIGRRRVLGIDPGFR-TGCKWAALTETGS---LLEVGVIYP---HEPQKRWEEAKGN 367
Query: 56 LTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILS 95
L ++K E A+ ++ + +A +
Sbjct: 368 LCQIVKKHGIELIAIGNGTASR--ETEALVAEAIGEMEQA 405
>gi|119475503|ref|ZP_01615856.1| Transcriptional accessory protein [marine gamma proteobacterium
HTCC2143]
gi|119451706|gb|EAW32939.1| Transcriptional accessory protein [marine gamma proteobacterium
HTCC2143]
Length = 777
Score = 40.2 bits (93), Expect = 0.10, Method: Composition-based stats.
Identities = 19/90 (21%), Positives = 35/90 (38%), Gaps = 15/90 (16%)
Query: 8 IGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
IG+DPGLR TG +VD G + G I ++ + + + K ++
Sbjct: 331 IGLDPGLR-TGVKVAVVDGNG---KVLDHGAIYP---TPPQNKIAEASATIVAMAKKYQI 383
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILS 95
E A+ + A+ + + I +
Sbjct: 384 ELIAI------GNGTASRETDRFVGDIITA 407
>gi|295402741|ref|ZP_06812681.1| peptidase M22 glycoprotease [Geobacillus thermoglucosidasius
C56-YS93]
gi|312112516|ref|YP_003990832.1| peptidase M22 glycoprotease [Geobacillus sp. Y4.1MC1]
gi|294975205|gb|EFG50843.1| peptidase M22 glycoprotease [Geobacillus thermoglucosidasius
C56-YS93]
gi|311217617|gb|ADP76221.1| peptidase M22 glycoprotease [Geobacillus sp. Y4.1MC1]
Length = 246
Score = 40.2 bits (93), Expect = 0.11, Method: Composition-based stats.
Identities = 20/116 (17%), Positives = 42/116 (36%), Gaps = 12/116 (10%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
++I+ ID G +V+ + G IV+ +++ + RL + L
Sbjct: 1 MKILAIDTSNMAMGVALVEED------IVKGEIVTNIKKDHSARLMPAIQSLLK-DCGVS 53
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
P E + + V + + + IA +IP++ + + A G
Sbjct: 54 PHELGL--IVVARGPGSYTGVRIGTTIAKTLAWALKIPIAGVSSLEVLAA---NGR 104
>gi|225387769|ref|ZP_03757533.1| hypothetical protein CLOSTASPAR_01539 [Clostridium asparagiforme
DSM 15981]
gi|225046130|gb|EEG56376.1| hypothetical protein CLOSTASPAR_01539 [Clostridium asparagiforme
DSM 15981]
Length = 151
Score = 40.2 bits (93), Expect = 0.11, Method: Composition-based stats.
Identities = 23/148 (15%), Positives = 56/148 (37%), Gaps = 19/148 (12%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+G+D G + G + D G +++ T+ + VR+ +L + + ++I +
Sbjct: 1 MRIMGLDYGSKTVGVAVCDPLG-----ITAQTVETIVRKD-ENKLRKTLARIEELIGAYE 54
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKK 124
E + K+ T+ +A + + R + + V D+
Sbjct: 55 IERIVL---GYPKNMNNTVGERAQKAEELKAALERRTGLPVILWDERLTTVA----ADRV 107
Query: 125 QIHMMLKMLMPESFFKGKDAADALAIAV 152
+ ++ + + D +A A+
Sbjct: 108 LMESGVRREHRKE------SVDQIAAAM 129
>gi|49475549|ref|YP_033590.1| hypothetical protein BH07790 [Bartonella henselae str. Houston-1]
gi|49238355|emb|CAF27579.1| hypothetical protein BH07790 [Bartonella henselae str. Houston-1]
Length = 95
Score = 39.9 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 31/83 (37%), Gaps = 2/83 (2%)
Query: 67 EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
E+V + A G A +IP TIKK + G G+ K++I
Sbjct: 1 MVYFEEVRRHIRIDAAHVYGGLLATLTALYEYHQIPYEGIPVGTIKKKMTGKGNASKEEI 60
Query: 127 HMMLKMLMPESFFKGKDAADALA 149
++ S + ADALA
Sbjct: 61 IKVVCAKGHASC--DDNEADALA 81
>gi|332975263|gb|EGK12163.1| hypothetical protein HMPREF0476_0162 [Kingella kingae ATCC 23330]
Length = 67
Score = 39.9 bits (92), Expect = 0.12, Method: Composition-based stats.
Identities = 9/32 (28%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 7 IIGIDPGLRRTGWGIVDVA--GDNLCFVSSGT 36
I+G+D G+ GW +V++ + L + G
Sbjct: 9 ILGLDLGIASCGWAVVEMDEQENPLRLIDVGV 40
>gi|296242340|ref|YP_003649827.1| butyrate kinase [Thermosphaera aggregans DSM 11486]
gi|296094924|gb|ADG90875.1| butyrate kinase [Thermosphaera aggregans DSM 11486]
Length = 396
Score = 39.9 bits (92), Expect = 0.12, Method: Composition-based stats.
Identities = 14/69 (20%), Positives = 25/69 (36%), Gaps = 4/69 (5%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+R++GIDPG + ++D V +I + S + + L
Sbjct: 1 MRVLGIDPGTKTMDLCLLDNG----EVVGEASIETSKVASNPETVLEEISELKPFDVVVV 56
Query: 65 PEEAAVEQV 73
P VE +
Sbjct: 57 PSGYGVEPM 65
>gi|118580106|ref|YP_901356.1| RNA-binding S1 domain-containing protein [Pelobacter propionicus
DSM 2379]
gi|118502816|gb|ABK99298.1| RNA binding S1 domain protein [Pelobacter propionicus DSM 2379]
Length = 723
Score = 39.9 bits (92), Expect = 0.13, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 9/74 (12%)
Query: 6 RIIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
R++GIDPG R TG +D G + V TI + R+ Q + L +++ +
Sbjct: 325 RVLGIDPGFR-TGSKLAALDATGRFMEHV---TIYPHTGE---ARIHQARQELLRLVETF 377
Query: 64 RPEEAAVEQVFVNK 77
E AV +
Sbjct: 378 DIEMIAVGNGTAGR 391
>gi|257456747|ref|ZP_05621933.1| CRISPR-associated protein, Csn1 family [Treponema vincentii ATCC
35580]
gi|257445851|gb|EEV20908.1| CRISPR-associated protein, Csn1 family [Treponema vincentii ATCC
35580]
Length = 281
Score = 39.9 bits (92), Expect = 0.14, Method: Composition-based stats.
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGT 36
++ +G+D G GWGIVD + + G
Sbjct: 1 MKTLGLDIGTNSIGWGIVDETANKIE--DCGV 30
>gi|240949037|ref|ZP_04753391.1| CRISPR-associated endonuclease Csn1 family protein
[Actinobacillus minor NM305]
gi|240296624|gb|EER47242.1| CRISPR-associated endonuclease Csn1 family protein
[Actinobacillus minor NM305]
Length = 1056
Score = 39.9 bits (92), Expect = 0.14, Method: Composition-based stats.
Identities = 9/32 (28%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNL--CFVSSGT 36
I+G+D G+ GW +V++ + L + G
Sbjct: 7 ILGLDLGIASVGWAVVEIDQNELPIRLIDLGV 38
>gi|9628684|ref|NP_043550.1| holin [Lactococcus phage c2]
gi|1146300|gb|AAA92181.1| holin [Lactococcus phage c2]
Length = 161
Score = 39.5 bits (91), Expect = 0.15, Method: Composition-based stats.
Identities = 24/160 (15%), Positives = 53/160 (33%), Gaps = 23/160 (14%)
Query: 1 MRKSIRIIGIDPGLRR-----TGWGIVDVAGDNLCFVSSGTIVS-CVRQSLAFRLCQLYE 54
M+K I+ ID TG+ G + G+I + +++ R +
Sbjct: 1 MKK---ILAIDFSTASKKDEGTGYAF-RKDGQ----LYVGSIKAYNAKKNAWERTFDIVN 52
Query: 55 GLTDVIKNW--RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIK 112
+ D+I + + A+E + ++ ++ L I + + +
Sbjct: 53 AIKDIIDEFDLKDYHMAIETPIMGRNRKHSITLANCNGYFIGAIDGLVNGYTFIDNSKWC 112
Query: 113 KAVIGVGHGDKKQIHMMLKMLMPESFFKGKDA-----ADA 147
+ G ++Q L+ ++ D ADA
Sbjct: 113 SYHLISGK--REQRKEESLELLKQTGLVPLDCKDDNMADA 150
>gi|331005891|ref|ZP_08329243.1| Transcription accessory protein (S1 RNA-binding domain) [gamma
proteobacterium IMCC1989]
gi|330420335|gb|EGG94649.1| Transcription accessory protein (S1 RNA-binding domain) [gamma
proteobacterium IMCC1989]
Length = 780
Score = 39.5 bits (91), Expect = 0.16, Method: Composition-based stats.
Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 9/76 (11%)
Query: 8 IGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
IG+DPGLR TG ++D G + G I RL + L + + +
Sbjct: 326 IGLDPGLR-TGVKVAVIDETG---KVLDHGAIFPNQ---PQKRLQEAEAVLVNFCQKYNV 378
Query: 66 EEAAVEQVFVNKDAVA 81
E A+ +++ +
Sbjct: 379 ELIAIGNGTASRETES 394
>gi|293374256|ref|ZP_06620584.1| RNAse YqgF [Turicibacter sanguinis PC909]
gi|325844837|ref|ZP_08168289.1| RNAse H domain protein, YqgF family [Turicibacter sp. HGF1]
gi|292647089|gb|EFF65071.1| RNAse YqgF [Turicibacter sanguinis PC909]
gi|325489024|gb|EGC91412.1| RNAse H domain protein, YqgF family [Turicibacter sp. HGF1]
Length = 143
Score = 39.1 bits (90), Expect = 0.19, Method: Composition-based stats.
Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 4/61 (6%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
++I+G+D G R G I D G ++ G ++ + Q + L K +
Sbjct: 1 MKILGLDLGTRTCGIAISDALG----MMAHGVETFRFEENHYKKAIQHVQELVKTHKISK 56
Query: 65 P 65
Sbjct: 57 I 57
>gi|319900142|ref|YP_004159870.1| ROK family protein [Bacteroides helcogenes P 36-108]
gi|319415173|gb|ADV42284.1| ROK family protein [Bacteroides helcogenes P 36-108]
Length = 326
Score = 39.1 bits (90), Expect = 0.19, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 6/46 (13%)
Query: 1 MRKSIR---IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQ 43
M S+ ++GID G T +GIVD G ++SG+I + +
Sbjct: 1 MNSSMEKPYVVGIDIGGTNTVFGIVDARG---TIIASGSIKTGAYE 43
>gi|212638053|ref|YP_002314573.1| glycoprotease family enzyme [Anoxybacillus flavithermus WK1]
gi|212559533|gb|ACJ32588.1| Glycoprotease family enzyme [Anoxybacillus flavithermus WK1]
Length = 240
Score = 39.1 bits (90), Expect = 0.19, Method: Composition-based stats.
Identities = 19/116 (16%), Positives = 47/116 (40%), Gaps = 11/116 (9%)
Query: 1 MRK--SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTD 58
MR+ +++++ ID G +VD + G +++ ++++ + R+ E L
Sbjct: 1 MRRFLTMKVLAIDTSTFVMGVAVVDGQ------IVKGEMITNLKKNHSIRVMPAIESLLQ 54
Query: 59 VIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKA 114
P++ ++++ V K + + IA IP+ + + A
Sbjct: 55 QCDM-NPQD--LDRIVVAKGPGSYTGVRIGVTIAKTLAWTLNIPLVGISSLEVMAA 107
>gi|269123857|ref|YP_003306434.1| RNA binding S1 domain-containing protein [Streptobacillus
moniliformis DSM 12112]
gi|268315183|gb|ACZ01557.1| RNA binding S1 domain protein [Streptobacillus moniliformis DSM
12112]
Length = 762
Score = 39.1 bits (90), Expect = 0.20, Method: Composition-based stats.
Identities = 15/77 (19%), Positives = 29/77 (37%), Gaps = 6/77 (7%)
Query: 7 IIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
I+G+DPG R TG I+D G F S + +L + + +
Sbjct: 322 ILGLDPGYR-TGAKLAIIDKDG---FFKESDVVYLVKEMHSEKQLETARNKILKYLSKYD 377
Query: 65 PEEAAVEQVFVNKDAVA 81
+ A+ +++ +
Sbjct: 378 VDIVAIGNGTASRETES 394
>gi|9631339|ref|NP_048177.1| ORF MSV106 putative vaccinia A22R homolog, similar to SW:P20997
[Melanoplus sanguinipes entomopoxvirus]
gi|4049692|gb|AAC97652.1| ORF MSV106 putative vaccinia A22R homolog, similar to SW:P20997
[Melanoplus sanguinipes entomopoxvirus]
Length = 163
Score = 39.1 bits (90), Expect = 0.20, Method: Composition-based stats.
Identities = 8/36 (22%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSC 40
+ I+GID G++ G I+++ + + I +
Sbjct: 1 MNILGIDVGIKNLGLCIINIKDNKYNII---CIKTD 33
>gi|329121339|ref|ZP_08249965.1| ribonuclease RNase H fold domain protein [Dialister
micraerophilus DSM 19965]
gi|327469748|gb|EGF15214.1| ribonuclease RNase H fold domain protein [Dialister
micraerophilus DSM 19965]
Length = 144
Score = 39.1 bits (90), Expect = 0.20, Method: Composition-based stats.
Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 6/71 (8%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI---KNW 63
I+ IDPG +TG +V G+ V I + + L + E I +
Sbjct: 2 ILSIDPGSEKTGIAVVKKDGN---LVMKKIIKTERLEEEIKTLTKKIEITETAIGNGTHH 58
Query: 64 RPEEAAVEQVF 74
+ E +E+++
Sbjct: 59 KKLEKRIEKLY 69
>gi|325578067|ref|ZP_08148261.1| CRISPR-associated endonuclease Csn1 family protein [Haemophilus
parainfluenzae ATCC 33392]
gi|325160300|gb|EGC72428.1| CRISPR-associated endonuclease Csn1 family protein [Haemophilus
parainfluenzae ATCC 33392]
Length = 1054
Score = 39.1 bits (90), Expect = 0.21, Method: Composition-based stats.
Identities = 9/32 (28%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 7 IIGIDPGLRRTGWGIVDVA--GDNLCFVSSGT 36
I+G+D G+ GW +V++ + L + G
Sbjct: 9 ILGLDLGIASVGWAVVEIDEKENPLRLIDVGV 40
>gi|301156486|emb|CBW15957.1| unnamed protein product [Haemophilus parainfluenzae T3T1]
Length = 1052
Score = 39.1 bits (90), Expect = 0.21, Method: Composition-based stats.
Identities = 9/32 (28%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 7 IIGIDPGLRRTGWGIVDVA--GDNLCFVSSGT 36
I+G+D G+ GW +V++ + L + G
Sbjct: 9 ILGLDLGIASVGWAVVEIDEKENPLRLIDVGV 40
>gi|189485225|ref|YP_001956166.1| CRISPR-associated protein Csn1 [uncultured Termite group 1
bacterium phylotype Rs-D17]
gi|170287184|dbj|BAG13705.1| CRISPR-associated protein Csn1 [uncultured Termite group 1
bacterium phylotype Rs-D17]
Length = 1032
Score = 39.1 bits (90), Expect = 0.22, Method: Composition-based stats.
Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 9/51 (17%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVA------GDNLCFVSSGT-IVSCVRQS 44
M+K RI+G+D G+ GW +V+ + SG I +
Sbjct: 1 MKK--RILGLDIGIASVGWALVEFDDEFQDNKKKGTIIKSGVRIFTRAETP 49
>gi|329964732|ref|ZP_08301786.1| putative glucokinase [Bacteroides fluxus YIT 12057]
gi|328525132|gb|EGF52184.1| putative glucokinase [Bacteroides fluxus YIT 12057]
Length = 338
Score = 39.1 bits (90), Expect = 0.23, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 6/46 (13%)
Query: 1 MRKSIR---IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQ 43
M ++ ++GID G T +GIVD G ++SG+I + +
Sbjct: 13 MNSNMEKPYVVGIDIGGTNTVFGIVDARG---TIIASGSIKTGAYE 55
>gi|282598912|ref|YP_003358462.1| N4 gp46-like protein [Pseudomonas phage LIT1]
gi|259048672|emb|CAZ66321.1| N4 gp46-like protein [Pseudomonas phage LIT1]
Length = 186
Score = 39.1 bits (90), Expect = 0.23, Method: Composition-based stats.
Identities = 31/181 (17%), Positives = 58/181 (32%), Gaps = 24/181 (13%)
Query: 7 IIGIDPGLRRTGWGI----VDVAGDNLCFVSSGTIVSCVRQSLAFR-----LCQLYEGLT 57
++G+DP + WG+ D + L I + + R L + E T
Sbjct: 6 VVGMDPSMSN--WGLACGQYDTTSNTLSLRHIEVIKTSKTKDKQIRVNSDDLNRSTEITT 63
Query: 58 DVIKNWR-PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVI 116
V++ + VE ++ A A G + + + P P +K
Sbjct: 64 RVMEVIKEANVIFVEVPVGSQSAAAMKSYGMCIG-ILSAVRASGKPFHLLTPTDLKVMAC 122
Query: 117 GVGHGDKKQIHM-MLKMLMPESFF----------KGKDAADALAIAVCHAYHANSGYYKI 165
K+ + +K ++ + + ADA A A +H N +
Sbjct: 123 NSKTASKEAMIEWAVKKYPHLNWPMTPKGEVIASRAEHMADACAAAEYGVFHHNDFKLAL 182
Query: 166 A 166
A
Sbjct: 183 A 183
>gi|167761816|ref|ZP_02433943.1| hypothetical protein BACSTE_00157 [Bacteroides stercoris ATCC
43183]
gi|167700322|gb|EDS16901.1| hypothetical protein BACSTE_00157 [Bacteroides stercoris ATCC
43183]
Length = 326
Score = 38.7 bits (89), Expect = 0.25, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
Query: 1 MRKSIR---IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQS 44
M ++ ++GID G T +GIVD G ++SG+I +
Sbjct: 1 MNSNMEKPYVVGIDIGGTNTVFGIVDARG---TILASGSIKTGAYDE 44
>gi|282855412|ref|ZP_06264733.1| polynucleotidyl transferase, ribonuclease H family
[Pyramidobacter piscolens W5455]
gi|282586708|gb|EFB91955.1| polynucleotidyl transferase, ribonuclease H family
[Pyramidobacter piscolens W5455]
Length = 145
Score = 38.7 bits (89), Expect = 0.25, Method: Composition-based stats.
Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 8 IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
+GIDPG ++ GW + AG V+SG + + + A + + + +
Sbjct: 3 LGIDPGRQKFGWAL---AGGEGKLVASGIVPAEKLEDFALKAARSCKDCEEWR 52
>gi|213963251|ref|ZP_03391508.1| conserved hypothetical protein [Capnocytophaga sputigena Capno]
gi|213954113|gb|EEB65438.1| conserved hypothetical protein [Capnocytophaga sputigena Capno]
Length = 136
Score = 38.7 bits (89), Expect = 0.25, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 28/77 (36%), Gaps = 4/77 (5%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+ ID G +RTG + D L ++SG LAF E + +
Sbjct: 1 MRILAIDYGTKRTGIAVTD----PLQIIASGLCTVETPTLLAFLKQYTTEEAVEGFVIGQ 56
Query: 65 PEEAAVEQVFVNKDAVA 81
P+ E V
Sbjct: 57 PKRLNNEDSSVETHIQQ 73
>gi|118462497|ref|YP_879576.1| gp6 protein [Mycobacterium avium 104]
gi|118163784|gb|ABK64681.1| gp6 protein [Mycobacterium avium 104]
Length = 203
Score = 38.7 bits (89), Expect = 0.26, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 43/121 (35%), Gaps = 4/121 (3%)
Query: 7 IIGIDPGLRRTGWGIVD-VAGDNLCFVS-SGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
++G+D L G D V GD V S S + R L +G+
Sbjct: 11 VVGLDLSLTGAGIAAFDLVTGDLSTAVHRSQAPKSDTLGAHVARHRALVDGIVQQTIGCD 70
Query: 65 PEEAAVEQVFVNKDAV--ATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGD 122
P VE + + A + + G + A PV E P+ IK+ G G+
Sbjct: 71 PALVVVEGLRFSVSAQDSSLSRRGFLWWAVVEGLVNAGAPVLEVTPSQIKQLATGKGNAS 130
Query: 123 K 123
K
Sbjct: 131 K 131
>gi|162448419|ref|YP_001610786.1| hypothetical protein sce0149 [Sorangium cellulosum 'So ce 56']
gi|161159001|emb|CAN90306.1| hypothetical protein sce0149 [Sorangium cellulosum 'So ce 56']
Length = 163
Score = 38.7 bits (89), Expect = 0.27, Method: Composition-based stats.
Identities = 22/113 (19%), Positives = 35/113 (30%), Gaps = 5/113 (4%)
Query: 19 WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAV---EQVFV 75
W +VD D V + T + RL + LT ++ ++P AV E
Sbjct: 24 WAVVDGTIDRPVLVDAKTTSAPKGWDEPARLNWYRKELTRILNLYQPRRLAVRDAEAFGP 83
Query: 76 NKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHM 128
+ + +AI + V A +G KK I
Sbjct: 84 KGRNKSLQDRARIEGVAIELAYSLGVEVQS-GAMKTISARLGS-KAGKKHIAE 134
>gi|213019712|ref|ZP_03335517.1| putative phage related protein [Wolbachia endosymbiont of Culex
quinquefasciatus JHB]
gi|212994753|gb|EEB55396.1| putative phage related protein [Wolbachia endosymbiont of Culex
quinquefasciatus JHB]
Length = 65
Score = 38.7 bits (89), Expect = 0.27, Method: Composition-based stats.
Identities = 11/45 (24%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 106 YAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESFFKGKDAADALAI 150
TIK+ + G G+ K ++ +K + + +DALA+
Sbjct: 6 VNVKTIKRFIAGNGNASKSEVIEAVKE--KGFLPRDDNESDALAL 48
>gi|209963404|ref|YP_002296319.1| hypothetical protein RC1_0056 [Rhodospirillum centenum SW]
gi|209956870|gb|ACI97506.1| conserved hypothetical protein [Rhodospirillum centenum SW]
Length = 179
Score = 38.7 bits (89), Expect = 0.27, Method: Composition-based stats.
Identities = 23/132 (17%), Positives = 39/132 (29%), Gaps = 8/132 (6%)
Query: 4 SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGT--IVSCVRQSLAFRLCQLYEGLTDVIK 61
++ ++ +D G GW + G + SGT R + L +V
Sbjct: 24 TLVVLALDLGST-MGWALRSADG----AIVSGTEAFRQDRWSGGGMRYLRFRRWLGEVAT 78
Query: 62 NWR-PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
E+V + A G A I TIK+ G G+
Sbjct: 79 MTGGLGLVVYEEVRRHVGTDAAHVYGGFLATLTAWCEDRGIAYEGVPVGTIKRFATGKGN 138
Query: 121 GDKKQIHMMLKM 132
K + ++
Sbjct: 139 AGKDAVIAAVRA 150
>gi|258648111|ref|ZP_05735580.1| CRISPR-associated protein, Csn1 family [Prevotella tannerae ATCC
51259]
gi|260851984|gb|EEX71853.1| CRISPR-associated protein, Csn1 family [Prevotella tannerae ATCC
51259]
Length = 1234
Score = 38.7 bits (89), Expect = 0.28, Method: Composition-based stats.
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 6 RIIGIDPGLRRTGWGIVDVA-GDNLCFVSSG 35
RI+G+D G GW +VD + + G
Sbjct: 20 RILGLDTGTNSLGWAVVDRDENNQYTPICRG 50
>gi|239825790|ref|YP_002948414.1| peptidase M22 glycoprotease [Geobacillus sp. WCH70]
gi|239806083|gb|ACS23148.1| peptidase M22 glycoprotease [Geobacillus sp. WCH70]
Length = 246
Score = 38.7 bits (89), Expect = 0.28, Method: Composition-based stats.
Identities = 20/116 (17%), Positives = 42/116 (36%), Gaps = 12/116 (10%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
++I+ ID G +V+ + G IV+ +++ + R+ + L
Sbjct: 1 MKILAIDTSNVVMGVALVEDD------IVKGEIVTNIKKDHSTRVMPAIQSLLK-DCGVS 53
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
P E +E + V + + + IA +IP+ + + A G
Sbjct: 54 PSE--LELIVVARGPGSYTGVRIGVTIAKTLAWALKIPIVGVSSLEVLAA---NGR 104
>gi|119952222|ref|YP_950524.1| gp46 [Enterobacteria phage N4]
gi|117650941|gb|ABK54414.1| gp46 [Enterobacteria phage N4]
Length = 185
Score = 38.7 bits (89), Expect = 0.30, Method: Composition-based stats.
Identities = 29/166 (17%), Positives = 57/166 (34%), Gaps = 19/166 (11%)
Query: 7 IIGIDPGLRRTGW--GIVDVAGDNLCFVSSGTIVSCVRQSLAFR-----LCQLYEGLTDV 59
++G+DP R G G++D+ L + + + + R + + V
Sbjct: 5 VLGVDPSFRNWGLARGMLDLETGILSGLDLKLVETKPDGTKQVRQNSKDMQAAEDITAGV 64
Query: 60 IKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVG 119
I ++ + +V V + +K + + + E P K A+ G+
Sbjct: 65 IDWFKEAKVIFVEVPVGSQSANGMKSYGVCVGILGALRALGHEIIEVTPIENKVALSGIK 124
Query: 120 HGDKKQIHMMLKMLMPESF----------FKGKDAADALAIAVCHA 155
K + PE+ K + ADA+ A+ HA
Sbjct: 125 TASKDVMIRAATGFYPEANWLKDTKGRLLNKNEHLADAVG-AI-HA 168
>gi|312880395|ref|ZP_07740195.1| conserved hypothetical protein [Aminomonas paucivorans DSM 12260]
gi|310783686|gb|EFQ24084.1| conserved hypothetical protein [Aminomonas paucivorans DSM 12260]
Length = 163
Score = 38.7 bits (89), Expect = 0.30, Method: Composition-based stats.
Identities = 28/159 (17%), Positives = 48/159 (30%), Gaps = 18/159 (11%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSS-----GTIVSCVRQSLAFRLCQLYEGLT-- 57
+RI GIDPGLR I++ G G V + R +
Sbjct: 1 MRICGIDPGLRGA-VAILEADGSPWRIEDMPLRSLGKTRQEVDGAALARFLVEAGEIRLA 59
Query: 58 -DVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVI 116
+ P + ++ + + +A + +L + + +
Sbjct: 60 VVEAVHAMPGQGVSSCFSFGRNVGVVVGVLEALGVPLLEVSPRT------WQGDVLRGTP 113
Query: 117 GVG--HGDKKQIHMMLKMLMPESFFKGKDA-ADALAIAV 152
G G + + KG D ADALA+A
Sbjct: 114 GDGKERALRWASLAFPGASLFTPRGKGLDGRADALALAW 152
>gi|237736046|ref|ZP_04566527.1| N-acetylmannosamine kinase [Fusobacterium mortiferum ATCC 9817]
gi|229421860|gb|EEO36907.1| N-acetylmannosamine kinase [Fusobacterium mortiferum ATCC 9817]
Length = 302
Score = 38.7 bits (89), Expect = 0.31, Method: Composition-based stats.
Identities = 10/56 (17%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
+R+IGID G +G+++ G + SG + + + + + + +
Sbjct: 1 MRVIGIDIGGTAVKYGLLEEDG---KLLESGEFPTEAGKGIENLFENMCKIIDKYM 53
>gi|313894648|ref|ZP_07828211.1| conserved hypothetical protein [Veillonella sp. oral taxon 158
str. F0412]
gi|313440838|gb|EFR59267.1| conserved hypothetical protein [Veillonella sp. oral taxon 158
str. F0412]
Length = 175
Score = 38.7 bits (89), Expect = 0.31, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 3/61 (4%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
M ++ I+ +DPG +TG IV G V I + RL Y G+ ++
Sbjct: 1 MTENTYILAVDPGNEKTGVAIVTPDGS---MVCRNIISTKTFNDDIERLLTEYYGIVHIV 57
Query: 61 K 61
Sbjct: 58 C 58
>gi|1881288|dbj|BAA19315.1| ydcI [Bacillus subtilis]
Length = 670
Score = 38.3 bits (88), Expect = 0.32, Method: Composition-based stats.
Identities = 19/156 (12%), Positives = 47/156 (30%), Gaps = 24/156 (15%)
Query: 1 MRKSIR---IIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEG 55
++ ++ ++G+DP R TG + D G L I + + +E
Sbjct: 314 LQPPMKGKTVLGVDPAFR-TGCKLAVSDETGKVLKI---DVIYPHA---PVNKTKEAHEK 366
Query: 56 LTDVIKNWRPEEAAV-------EQVFVNKD-----AVATLKLGQARAIAILSPALARIPV 103
+ +++ ++ E A+ E + + A +
Sbjct: 367 VKKILEQYQVEMVAIGNGTASRETEQFIVNVLRDMPRKIYYVIYPHAPVNKTKEAHEKVK 426
Query: 104 SEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESFF 139
++ IG G ++ ++ +L
Sbjct: 427 KILEQYQVEMVAIGNGTASRETEQFIVNVLRDMPRK 462
>gi|329956822|ref|ZP_08297391.1| putative glucokinase [Bacteroides clarus YIT 12056]
gi|328523861|gb|EGF50948.1| putative glucokinase [Bacteroides clarus YIT 12056]
Length = 326
Score = 38.3 bits (88), Expect = 0.33, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 6/46 (13%)
Query: 1 MRKSIR---IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQ 43
M ++ ++GID G T +GIVD G ++SG+I + +
Sbjct: 1 MNSNMEKPYVVGIDIGGTNTVFGIVDARG---TILASGSIKTGAYE 43
>gi|52549635|gb|AAU83484.1| conserved hypothetical protein [uncultured archaeon GZfos28G7]
Length = 431
Score = 38.3 bits (88), Expect = 0.33, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSS 34
I+GIDPG G I+D+ G+ + SS
Sbjct: 12 IIVGIDPGTTI-GVAIIDLEGNPIEVFSS 39
>gi|256845423|ref|ZP_05550881.1| glucokinase [Fusobacterium sp. 3_1_36A2]
gi|294785281|ref|ZP_06750569.1| glucokinase [Fusobacterium sp. 3_1_27]
gi|256718982|gb|EEU32537.1| glucokinase [Fusobacterium sp. 3_1_36A2]
gi|294486995|gb|EFG34357.1| glucokinase [Fusobacterium sp. 3_1_27]
Length = 315
Score = 38.3 bits (88), Expect = 0.34, Method: Composition-based stats.
Identities = 18/84 (21%), Positives = 31/84 (36%), Gaps = 8/84 (9%)
Query: 8 IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEG-----LTDVIKN 62
IGID G T G+VD G+ ++S I + Q++ L +++E L I
Sbjct: 5 IGIDLGGTNTKIGVVDSEGN---LINSKIIKTHSHQNVDKTLERIWETAKKLILEKEIPL 61
Query: 63 WRPEEAAVEQVFVNKDAVATLKLG 86
+ + K+
Sbjct: 62 FSVVGIGIGIPGPVKNQSTVGFFA 85
>gi|237742087|ref|ZP_04572568.1| glucokinase [Fusobacterium sp. 4_1_13]
gi|229429735|gb|EEO39947.1| glucokinase [Fusobacterium sp. 4_1_13]
Length = 315
Score = 38.3 bits (88), Expect = 0.34, Method: Composition-based stats.
Identities = 18/84 (21%), Positives = 31/84 (36%), Gaps = 8/84 (9%)
Query: 8 IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEG-----LTDVIKN 62
IGID G T G+VD G+ ++S I + Q++ L +++E L I
Sbjct: 5 IGIDLGGTNTKIGVVDSEGN---LINSKIIKTHSHQNVDKTLERIWETAKKLILEKEIPL 61
Query: 63 WRPEEAAVEQVFVNKDAVATLKLG 86
+ + K+
Sbjct: 62 FSVVGIGIGIPGPVKNQSTVGFFA 85
>gi|19704499|ref|NP_604061.1| glucokinase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
gi|296328377|ref|ZP_06870903.1| glucokinase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726]
gi|19714775|gb|AAL95360.1| Glucokinase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
gi|296154451|gb|EFG95243.1| glucokinase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726]
Length = 315
Score = 38.3 bits (88), Expect = 0.34, Method: Composition-based stats.
Identities = 18/84 (21%), Positives = 31/84 (36%), Gaps = 8/84 (9%)
Query: 8 IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEG-----LTDVIKN 62
IGID G T G+VD G+ ++S I + Q++ L +++E L I
Sbjct: 5 IGIDLGGTNTKIGVVDSEGN---LINSKIIKTHSHQNVDKTLERIWETAKKLILEKEIPL 61
Query: 63 WRPEEAAVEQVFVNKDAVATLKLG 86
+ + K+
Sbjct: 62 FSVVGIGIGIPGPVKNQSTVGFFA 85
>gi|34762403|ref|ZP_00143404.1| Glucokinase; Xylose repressor [Fusobacterium nucleatum subsp.
vincentii ATCC 49256]
gi|27887928|gb|EAA24995.1| Glucokinase; Xylose repressor [Fusobacterium nucleatum subsp.
vincentii ATCC 49256]
Length = 315
Score = 38.3 bits (88), Expect = 0.34, Method: Composition-based stats.
Identities = 18/84 (21%), Positives = 31/84 (36%), Gaps = 8/84 (9%)
Query: 8 IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEG-----LTDVIKN 62
IGID G T G+VD G+ ++S I + Q++ L +++E L I
Sbjct: 5 IGIDLGGTNTKIGVVDSEGN---LINSKIIKTHSHQNVDKTLERIWETAKKLILEKEIPL 61
Query: 63 WRPEEAAVEQVFVNKDAVATLKLG 86
+ + K+
Sbjct: 62 FSVVGIGIGIPGPVKNQSTVGFFA 85
>gi|160915782|ref|ZP_02077990.1| hypothetical protein EUBDOL_01797 [Eubacterium dolichum DSM 3991]
gi|158432258|gb|EDP10547.1| hypothetical protein EUBDOL_01797 [Eubacterium dolichum DSM 3991]
Length = 1096
Score = 38.3 bits (88), Expect = 0.34, Method: Composition-based stats.
Identities = 9/30 (30%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGT 36
++G+D G+ G+GI+D+ + V G
Sbjct: 10 VLGLDIGITSVGFGIIDLDESEI--VDYGV 37
>gi|229825002|ref|ZP_04451071.1| hypothetical protein GCWU000182_00351 [Abiotrophia defectiva ATCC
49176]
gi|229790749|gb|EEP26863.1| hypothetical protein GCWU000182_00351 [Abiotrophia defectiva ATCC
49176]
Length = 140
Score = 38.3 bits (88), Expect = 0.36, Method: Composition-based stats.
Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 2/55 (3%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDV 59
+RI+G+D G + G + D G L I L L ++ E +
Sbjct: 1 MRIMGLDLGSKTCGVAVTDGLG--LTAQGLEVIRRKEENKLRQTLARITELTEEY 53
>gi|254787791|ref|YP_003075220.1| transcriptional accessory protein [Teredinibacter turnerae T7901]
gi|237685533|gb|ACR12797.1| putative transcriptional accessory protein [Teredinibacter turnerae
T7901]
Length = 773
Score = 38.3 bits (88), Expect = 0.36, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 9/65 (13%)
Query: 8 IGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
IG+DPGLR TG +VD G + G I R+ + L + K
Sbjct: 329 IGLDPGLR-TGVKVAVVDATGQ---VLDHGAIFP---TPPQNRVMEAEATLVALCKKHNV 381
Query: 66 EEAAV 70
A+
Sbjct: 382 SLIAI 386
>gi|307945029|ref|ZP_07660365.1| hypothetical protein TRICHSKD4_3702 [Roseibium sp. TrichSKD4]
gi|307770902|gb|EFO30127.1| hypothetical protein TRICHSKD4_3702 [Roseibium sp. TrichSKD4]
Length = 209
Score = 38.3 bits (88), Expect = 0.37, Method: Composition-based stats.
Identities = 34/193 (17%), Positives = 63/193 (32%), Gaps = 55/193 (28%)
Query: 9 GIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQL------------YEGL 56
G+D TGWG++ G +SSGT+ +++ ++ L
Sbjct: 6 GLDVSKTCTGWGLITPEG-----ISSGTMRCKIKRPFELPAGKIDAAYAGKVGDWYQREL 60
Query: 57 TDVIKNWRPEEAAVEQV----------------FVNKDAVATLKLG----------QARA 90
+ +P+ A+EQ +A +K+G + A
Sbjct: 61 DAWLVKHKPDTIAIEQPQPGSLERTKTEINHATMFAGEAKKKVKVGGTSFEVTHFLISLA 120
Query: 91 IAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKM-----------LMPESFF 139
+ + + R Y P+ + +G+G + + L
Sbjct: 121 FLMSTVCIRRGLQPVYVPSNEWRGTVGIGK-PPHTVEAKNRRDWYKKKARETALARGHET 179
Query: 140 KGKDAADALAIAV 152
K DAA+AL IA+
Sbjct: 180 KSGDAAEALCIAL 192
>gi|290968959|ref|ZP_06560494.1| conserved hypothetical protein [Megasphaera genomosp. type_1 str.
28L]
gi|290780915|gb|EFD93508.1| conserved hypothetical protein [Megasphaera genomosp. type_1 str.
28L]
Length = 138
Score = 38.3 bits (88), Expect = 0.38, Method: Composition-based stats.
Identities = 15/79 (18%), Positives = 30/79 (37%), Gaps = 13/79 (16%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCV------RQSLAFRLCQLYEGLTDVI 60
I IDPG +TG ++ G V I + ++ + + + +
Sbjct: 2 IFSIDPGSEKTGIAVIRQDG---TLVEKHIIPTAALLSVLQDKTQQYTIAHI---VMGDG 55
Query: 61 KNWRPEEAAVEQVFVNKDA 79
N +P + VEQ ++ +
Sbjct: 56 TNHKPLQVQVEQ-WLQSNR 73
>gi|325182070|emb|CCA16523.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 299
Score = 38.3 bits (88), Expect = 0.39, Method: Composition-based stats.
Identities = 31/201 (15%), Positives = 59/201 (29%), Gaps = 47/201 (23%)
Query: 2 RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCV-----RQSLAFR----LCQL 52
R ++R++GID TG +++ +G I + S+ R L Q
Sbjct: 32 RSNVRVLGIDINTNSTGLVVLNESG---KLDHCDKISTASLCNSDIVSIGHRIEEILIQT 88
Query: 53 YEGLTDVIKNWRPE-----EAAVEQVF-----VNKDAVATLKLGQARAIAILSPALARIP 102
+ L + +P+ +E ++L Q I S
Sbjct: 89 RDKLQGAQQLIQPDKPIVWFIGIEDFMRAFVAGRFHTKGLIQLAQLNGIVSYSCWQNFDA 148
Query: 103 VSEYAPNTIKKAVIGVGHGD-------------KKQIHMMLKMLMPE------------S 137
+ T+ ++ G+ K + ++ L P
Sbjct: 149 KPTHYHPTLARSYFGLSKPSVKSKTDNFSKQLIKDIVLEYVQDLDPLIRQSMTSTRTGRP 208
Query: 138 FFKGKDAADALAIAVCHAYHA 158
+ D ADA IA+ +
Sbjct: 209 TEQNYDIADAYIIALYTYFQR 229
>gi|51894064|ref|YP_076755.1| ribosomal protein S1-like protein [Symbiobacterium thermophilum IAM
14863]
gi|51857753|dbj|BAD41911.1| ribosomal protein S1-like RNA-binding domain [Symbiobacterium
thermophilum IAM 14863]
Length = 764
Score = 38.3 bits (88), Expect = 0.40, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 7/58 (12%)
Query: 3 KSIRIIGIDPGLRRTG--WGIVDVAGDNLC----FVSSGTIVSCVRQSLAFRLCQLYE 54
K + ++GIDPG R TG +VD G L +V+ G + + RL ++
Sbjct: 318 KGMTVMGIDPGYR-TGCKVAVVDETGRVLETGVIYVTLGERQRQQGEEVLVRLVDKHK 374
>gi|262273561|ref|ZP_06051375.1| transcription accessory protein [Grimontia hollisae CIP 101886]
gi|262222539|gb|EEY73850.1| transcription accessory protein [Grimontia hollisae CIP 101886]
Length = 775
Score = 38.3 bits (88), Expect = 0.41, Method: Composition-based stats.
Identities = 22/110 (20%), Positives = 45/110 (40%), Gaps = 10/110 (9%)
Query: 8 IGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
+GIDPGLR TG +VD G + + TI ++ + + +IK +
Sbjct: 329 LGIDPGLR-TGCKVAVVDATG---KLLDTATIYP---TPPQNKIAESARVVMALIKKHKV 381
Query: 66 EEAAVEQVFVNKDAVA-TLKLGQARAIAILSPALARIPVSEYAPNTIKKA 114
+ A+ +++ A + + I + ++ S Y+ + + A
Sbjct: 382 DLIAIGNGTASRETDAFVAAMLKDAGEKIQTVMVSEAGASVYSASELAAA 431
>gi|261378287|ref|ZP_05982860.1| CRISPR-associated protein, Csn1 family [Neisseria cinerea ATCC
14685]
gi|269145378|gb|EEZ71796.1| CRISPR-associated protein, Csn1 family [Neisseria cinerea ATCC
14685]
Length = 1082
Score = 37.9 bits (87), Expect = 0.42, Method: Composition-based stats.
Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 7 IIGIDPGLRRTGWGI--VDVAGDNLCFVSSGT 36
I+G+D G+ GW I +D + + + G
Sbjct: 12 ILGLDIGIASVGWAIVEIDEEENPIRLIDLGV 43
>gi|30387422|ref|NP_848251.1| crossover junction endodeoxyribonuclease [Enterobacteria phage
epsilon15]
gi|30266077|gb|AAO06106.1| crossover junction endodeoxyribonuclease [Salmonella phage
epsilon15]
Length = 154
Score = 37.9 bits (87), Expect = 0.43, Method: Composition-based stats.
Identities = 30/152 (19%), Positives = 56/152 (36%), Gaps = 15/152 (9%)
Query: 7 IIGIDPGLRRTG-WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
++GIDPG +G ++ G + ++ TI + + ++ +
Sbjct: 4 VLGIDPG--CSGSLVLITEQGHYIDHLAMPTIKVGTKS------RVNGAAVAAWVRQYVI 55
Query: 66 EEAAVEQVFV--NKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAV----IGVG 119
A +EQV + + G A +A IP + P KK+
Sbjct: 56 THAYLEQVGAMPGQGTASMFTFGHAAGVAEGILQGLNIPYTLVTPQAWKKSAGLIGSDKD 115
Query: 120 HGDKKQIHMMLKMLMPESFFKGKDAADALAIA 151
+ I + ++ ++ KG+ ADAL IA
Sbjct: 116 AARSRAIQLYPELRALDAKAKGQAIADALLIA 147
>gi|218200389|gb|EEC82816.1| hypothetical protein OsI_27603 [Oryza sativa Indica Group]
Length = 3400
Score = 37.9 bits (87), Expect = 0.45, Method: Composition-based stats.
Identities = 23/146 (15%), Positives = 48/146 (32%), Gaps = 24/146 (16%)
Query: 39 SCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPAL 98
+ +++ R+ L E L I P +E + ++ T + + +++
Sbjct: 1295 LKLDENMPRRIQSLVEKLDAGIWIQIP---CIELSCSEQSSLPTFIMSKISKCNLIA--- 1348
Query: 99 ARIPVSEYAPNTIKKAVIGV----GHGDK----KQIHMMLKMLMPESFFKGKDA------ 144
+ AV G K + + + ++ E D+
Sbjct: 1349 --EDLYFVDGMEAVFAVTDELISIGKASKLYKGNALQFLEQRILNEESPGPNDSINITVS 1406
Query: 145 -ADALAIAVCHAYHANSGYYKIASQD 169
+D LAI CH+ KIA+ +
Sbjct: 1407 VSD-LAIFFCHSKDKGLALEKIANAN 1431
>gi|325968479|ref|YP_004244671.1| hypothetical protein VMUT_0959 [Vulcanisaeta moutnovskia 768-28]
gi|323707682|gb|ADY01169.1| hypothetical protein VMUT_0959 [Vulcanisaeta moutnovskia 768-28]
Length = 652
Score = 37.9 bits (87), Expect = 0.47, Method: Composition-based stats.
Identities = 29/146 (19%), Positives = 49/146 (33%), Gaps = 36/146 (24%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
I+GIDPG+ TG ++D+ G+ + ++L+ R L V + P
Sbjct: 257 IVGIDPGI-VTGVAVLDLNGN--------VLALHSGKNLSRR-----HVLKIVYQYGIPI 302
Query: 67 EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
AV+ K + KL + +P +K +I
Sbjct: 303 LIAVDT---AKPSDYAKKLAAMVGAVLYNPDRDLSI------------------AEKSEI 341
Query: 127 HMMLKMLMPESFFKGKDAADALAIAV 152
+ + + K DALA A
Sbjct: 342 AIKISREQGVTV-KDPHMRDALAAAY 366
>gi|237736431|ref|ZP_04566912.1| transcription accessory protein [Fusobacterium mortiferum ATCC
9817]
gi|229421473|gb|EEO36520.1| transcription accessory protein [Fusobacterium mortiferum ATCC
9817]
Length = 721
Score = 37.9 bits (87), Expect = 0.47, Method: Composition-based stats.
Identities = 14/86 (16%), Positives = 34/86 (39%), Gaps = 9/86 (10%)
Query: 1 MRKSIR---IIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEG 55
M+ ++ I+ +DPG R TG I+D G ++ + +L +
Sbjct: 310 MQAPLKEKSILALDPGYR-TGCKVAIIDKNG---FYIGNDVFFLVADMHTPKQLETAEKK 365
Query: 56 LTDVIKNWRPEEAAVEQVFVNKDAVA 81
+ D +K + + + +++ +
Sbjct: 366 IVDYVKKYNIDIIVIGNGTASRETES 391
>gi|220930482|ref|YP_002507391.1| CRISPR-associated protein, Csn1 family [Clostridium
cellulolyticum H10]
gi|220000810|gb|ACL77411.1| CRISPR-associated protein, Csn1 family [Clostridium
cellulolyticum H10]
Length = 1021
Score = 37.9 bits (87), Expect = 0.49, Method: Composition-based stats.
Identities = 7/38 (18%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 8 IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSL 45
+G+D G+ GW ++D + + + G +
Sbjct: 5 LGLDVGIASVGWAVIDKDNNKI--IDLGVRCFDKAEES 40
>gi|9627924|ref|NP_042322.1| hypothetical protein [Lactococcus phage bIL67]
gi|522267|gb|AAA74336.1| unknown [Lactococcus phage bIL67]
Length = 161
Score = 37.9 bits (87), Expect = 0.52, Method: Composition-based stats.
Identities = 26/160 (16%), Positives = 53/160 (33%), Gaps = 23/160 (14%)
Query: 1 MRKSIRIIGIDPGLRR-----TGWGIVDVAGDNLCFVSSGTIVS-CVRQSLAFRLCQLYE 54
M+K I+ ID TG+ G V G+I + +++ R +
Sbjct: 1 MKK---ILAIDFSTASKKGEGTGYAF-RKDGQ----VYVGSIKAYNPKKTAWERTFDIVN 52
Query: 55 GLTDVIKNWRP--EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIK 112
+ D+I + A+E + ++ ++ L I + + +
Sbjct: 53 AIKDIIDEFDLKGYHLAIETPIMGRNRKHSITLANCNGYFIGAIDGLVNGYTFIDNSKWC 112
Query: 113 KAVIGVGHGDKKQIHMMLKMLMP-----ESFFKGKDAADA 147
+ G ++Q L+ +S K + ADA
Sbjct: 113 SYHLISGK--REQRKEESLELLKATGLVDSNCKDDNIADA 150
>gi|188994244|ref|YP_001928496.1| partial ROK family transcriptional repressor with glucose kinase
domain [Porphyromonas gingivalis ATCC 33277]
gi|188593924|dbj|BAG32899.1| partial ROK family transcriptional repressor with glucose kinase
domain [Porphyromonas gingivalis ATCC 33277]
Length = 259
Score = 37.5 bits (86), Expect = 0.55, Method: Composition-based stats.
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
++G+D G T +G+VD G+ V S +I + L + L G+ +I+
Sbjct: 6 VLGVDVGGTNTVFGVVDARGN---LVISSSIKTGAHNDLNDYIKDLTAGINQLIEQ 58
>gi|330814399|ref|YP_004358638.1| crossover junction endodeoxyribonuclease [Candidatus Pelagibacter
sp. IMCC9063]
gi|327487494|gb|AEA81899.1| crossover junction endodeoxyribonuclease [Candidatus Pelagibacter
sp. IMCC9063]
Length = 165
Score = 37.5 bits (86), Expect = 0.55, Method: Composition-based stats.
Identities = 30/152 (19%), Positives = 54/152 (35%), Gaps = 12/152 (7%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDN--LCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
+ + GIDPG+ G + V D F T++ + QL + + +
Sbjct: 1 MIVFGIDPGVS----GAISVFEDKKITTFFDMPTMIEGKKNKRQVNAAQLAHEIKSRVVD 56
Query: 63 WRPEEAAVEQVFV--NKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKA--VIGV 118
+EQV + + GQ+ + + IP+ P KK +IG
Sbjct: 57 RDNSAVLIEQVGAMPGQGVTSMFNFGQSFGVIKGICSALGIPIYFIRPVKWKKHFNLIGT 116
Query: 119 GH-GDKKQIHMMLKMLMP-ESFFKGKDAADAL 148
+ ++ M L P + K + DA+
Sbjct: 117 EKDASRTKVIEMFPDLSPQLTKKKDSNKTDAI 148
>gi|256026560|ref|ZP_05440394.1| glucokinase [Fusobacterium sp. D11]
gi|289764567|ref|ZP_06523945.1| glucokinase [Fusobacterium sp. D11]
gi|289716122|gb|EFD80134.1| glucokinase [Fusobacterium sp. D11]
Length = 315
Score = 37.5 bits (86), Expect = 0.55, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 8 IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYE 54
IGID G T G+VD G+ ++S I + Q++ L +++E
Sbjct: 5 IGIDLGGTNTKIGVVDSEGN---LINSKIIKTHSHQNVDRTLERIWE 48
>gi|284048258|ref|YP_003398597.1| Holliday junction resolvase YqgF [Acidaminococcus fermentans DSM
20731]
gi|283952479|gb|ADB47282.1| Holliday junction resolvase YqgF [Acidaminococcus fermentans DSM
20731]
Length = 139
Score = 37.5 bits (86), Expect = 0.56, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGT--IVSCVRQSLAFRLCQLYEG 55
+RI+G+D G R G + D G F++ G I ++ RL +L E
Sbjct: 1 MRIMGLDLGTRTIGVSVSDETG----FIARGVETIRRKGLENDLKRLGELVEQ 49
>gi|160946420|ref|ZP_02093629.1| hypothetical protein PEPMIC_00380 [Parvimonas micra ATCC 33270]
gi|158447536|gb|EDP24531.1| hypothetical protein PEPMIC_00380 [Parvimonas micra ATCC 33270]
Length = 697
Score = 37.5 bits (86), Expect = 0.58, Method: Composition-based stats.
Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 12/75 (16%)
Query: 1 MRKSI---RIIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEG 55
M+ I ++GIDPG R TG ++ G L V+ I ++ + E
Sbjct: 307 MQSPILDRVVLGIDPGYR-TGCKVAVISKTGSVLDHVN---IYPTK---PQEKIKESKEI 359
Query: 56 LTDVIKNWRPEEAAV 70
L +IK + A+
Sbjct: 360 LAKLIKKYDVSLIAI 374
>gi|323490580|ref|ZP_08095786.1| hypothetical protein GPDM_14501 [Planococcus donghaensis MPA1U2]
gi|323395846|gb|EGA88686.1| hypothetical protein GPDM_14501 [Planococcus donghaensis MPA1U2]
Length = 721
Score = 37.5 bits (86), Expect = 0.59, Method: Composition-based stats.
Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 7/63 (11%)
Query: 1 MRKSIRIIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTD 58
M+ + ++G+DP R TG ++D G + I +S ++ E LT
Sbjct: 314 MKNKM-VLGVDPAYR-TGCKLAVIDETG---KLLEVAVIYPHPPKSDQAGSKKIMERLTA 368
Query: 59 VIK 61
Sbjct: 369 KYP 371
>gi|32266975|ref|NP_861007.1| hypothetical protein HH1476 [Helicobacter hepaticus ATCC 51449]
gi|32263027|gb|AAP78073.1| conserved hypothetical protein [Helicobacter hepaticus ATCC
51449]
Length = 131
Score = 37.5 bits (86), Expect = 0.60, Method: Composition-based stats.
Identities = 10/41 (24%), Positives = 15/41 (36%), Gaps = 5/41 (12%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGT-IVSCVRQS 44
+RI+G D G+ GW V+ G I +
Sbjct: 1 MRILGFDIGITSIGWAYVESN----ELKDCGVRIFTKAENP 37
>gi|239627761|ref|ZP_04670792.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239517907|gb|EEQ57773.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 150
Score = 37.5 bits (86), Expect = 0.62, Method: Composition-based stats.
Identities = 23/149 (15%), Positives = 52/149 (34%), Gaps = 19/149 (12%)
Query: 4 SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
++RI+G+D G + G + D G +++ T+ + R+ +L Q + +I +
Sbjct: 2 NMRIMGLDFGSKTVGVAVCDPLG-----ITAQTVETITRKD-ENKLRQTLARIEALIGQY 55
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
E + K+ TL + + R + + V +
Sbjct: 56 EIERIVL---GYPKNMNNTLGERAVKTEEFKTSLERRTGLPVVLWDERLTTVA----ASR 108
Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAV 152
I ++ + + D +A A+
Sbjct: 109 VLIESGVRREHRKE------SVDQIAAAM 131
>gi|332878326|ref|ZP_08446052.1| RNAse H domain protein, YqgF family [Capnocytophaga sp. oral
taxon 329 str. F0087]
gi|332683777|gb|EGJ56648.1| RNAse H domain protein, YqgF family [Capnocytophaga sp. oral
taxon 329 str. F0087]
Length = 136
Score = 37.5 bits (86), Expect = 0.62, Method: Composition-based stats.
Identities = 20/77 (25%), Positives = 28/77 (36%), Gaps = 4/77 (5%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+ ID G +RTG + D L ++SG Q L F E +
Sbjct: 1 MRILSIDYGTKRTGLAVTD----PLKLIASGLTTVDTPQLLPFLEKYTAEEAVEAFVIGL 56
Query: 65 PEEAAVEQVFVNKDAVA 81
P+ E V D
Sbjct: 57 PKRLNNEDSAVEADIQQ 73
>gi|313680200|ref|YP_004057939.1| butyrate kinase [Oceanithermus profundus DSM 14977]
gi|313152915|gb|ADR36766.1| butyrate kinase [Oceanithermus profundus DSM 14977]
Length = 357
Score = 37.5 bits (86), Expect = 0.63, Method: Composition-based stats.
Identities = 14/64 (21%), Positives = 26/64 (40%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+R+ I+PG T +++V + + SLA L + E + + W
Sbjct: 6 VRVFAINPGSTSTKLALLEVDASEARLLEEEVVRHAPAPSLAADLERRREQVLTQAQAWA 65
Query: 65 PEEA 68
P +A
Sbjct: 66 PFDA 69
>gi|224537710|ref|ZP_03678249.1| hypothetical protein BACCELL_02592 [Bacteroides cellulosilyticus
DSM 14838]
gi|224520686|gb|EEF89791.1| hypothetical protein BACCELL_02592 [Bacteroides cellulosilyticus
DSM 14838]
Length = 322
Score = 37.5 bits (86), Expect = 0.64, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQ 43
++GID G T +GIVD G ++SG+I +
Sbjct: 6 VVGIDIGGTNTVFGIVDARG---TIIASGSIKTGAHD 39
>gi|152978060|ref|YP_001343689.1| CRISPR-associated endonuclease Csn1 family protein
[Actinobacillus succinogenes 130Z]
gi|150839783|gb|ABR73754.1| CRISPR-associated protein, Csn1 family [Actinobacillus
succinogenes 130Z]
Length = 1062
Score = 37.5 bits (86), Expect = 0.70, Method: Composition-based stats.
Identities = 8/32 (25%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 7 IIGIDPGLRRTGWGIVDVA--GDNLCFVSSGT 36
I+G+D G+ GW +V++ + + G
Sbjct: 6 ILGLDLGIASVGWAVVEIDEQENPQRLIDVGV 37
>gi|258515025|ref|YP_003191247.1| RNA binding S1 domain-containing protein [Desulfotomaculum
acetoxidans DSM 771]
gi|257778730|gb|ACV62624.1| RNA binding S1 domain protein [Desulfotomaculum acetoxidans DSM
771]
Length = 718
Score = 37.2 bits (85), Expect = 0.71, Method: Composition-based stats.
Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 9/66 (13%)
Query: 7 IIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
++G+DPG R TG W +VD G G + ++ + E + +
Sbjct: 320 VLGVDPGFR-TGCKWAVVDDTG---KLWEVGVVYP---TPPQKKITETKEIFRQLADRYG 372
Query: 65 PEEAAV 70
A+
Sbjct: 373 ITVIAI 378
>gi|333029758|ref|ZP_08457819.1| Glucokinase [Bacteroides coprosuis DSM 18011]
gi|332740355|gb|EGJ70837.1| Glucokinase [Bacteroides coprosuis DSM 18011]
Length = 321
Score = 37.2 bits (85), Expect = 0.72, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLA 46
++GID G T +GIVD G+ + SG++ + S
Sbjct: 6 VVGIDIGGTNTVFGIVDARGN---IIDSGSVKTQTYLSPD 42
>gi|255009863|ref|ZP_05281989.1| ROK family transcriptional repressor [Bacteroides fragilis
3_1_12]
Length = 326
Score = 37.2 bits (85), Expect = 0.72, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 6/42 (14%)
Query: 1 MRKSIR---IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVS 39
M S+ ++GID G T +GIVD G ++SG + +
Sbjct: 1 MNSSMEKPYVVGIDIGGTNTVFGIVDARG---TIIASGAVKT 39
>gi|171854446|dbj|BAG16449.1| glucose kinase [Porphyromonas gingivalis]
Length = 319
Score = 37.2 bits (85), Expect = 0.73, Method: Composition-based stats.
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
++G+D G T +G+VD G+ V S +I + L + L G+ +I+
Sbjct: 6 VLGVDVGGTNTVFGVVDARGN---LVISSSIKTGAHNDLNDYIKDLTAGINQLIEQ 58
>gi|171854442|dbj|BAG16447.1| glucose kinase [Porphyromonas gingivalis]
Length = 319
Score = 37.2 bits (85), Expect = 0.73, Method: Composition-based stats.
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
++G+D G T +G+VD G+ V S +I + L + L G+ +I+
Sbjct: 6 VLGVDVGGTNTVFGVVDARGN---LVISSSIKTGAHNDLNDYIKDLTAGINQLIEQ 58
>gi|171854440|dbj|BAG16446.1| glucose kinase [Porphyromonas gingivalis]
Length = 319
Score = 37.2 bits (85), Expect = 0.74, Method: Composition-based stats.
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
++G+D G T +G+VD G+ V S +I + L + L G+ +I+
Sbjct: 6 VLGVDVGGTNTVFGVVDARGN---LVISSSIKTGAHNDLNDYIKDLTAGINQLIEQ 58
>gi|257469004|ref|ZP_05633098.1| transcription accessory protein [Fusobacterium ulcerans ATCC 49185]
gi|317063251|ref|ZP_07927736.1| transcription accessory protein [Fusobacterium ulcerans ATCC 49185]
gi|313688927|gb|EFS25762.1| transcription accessory protein [Fusobacterium ulcerans ATCC 49185]
Length = 721
Score = 37.2 bits (85), Expect = 0.75, Method: Composition-based stats.
Identities = 12/86 (13%), Positives = 34/86 (39%), Gaps = 9/86 (10%)
Query: 1 MRKSIR---IIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEG 55
M+ ++ ++ +DPG R TG ++D G ++ +L + +
Sbjct: 310 MQAPLKEKSVLALDPGYR-TGCKVAVIDRNG---FYIEKDVFFLVEEMHSPRQLAEAEKR 365
Query: 56 LTDVIKNWRPEEAAVEQVFVNKDAVA 81
+ D +K + + + +++ +
Sbjct: 366 IVDYVKKYEIDIIVIGNGTASRETES 391
>gi|189464241|ref|ZP_03013026.1| hypothetical protein BACINT_00578 [Bacteroides intestinalis DSM
17393]
gi|189438031|gb|EDV07016.1| hypothetical protein BACINT_00578 [Bacteroides intestinalis DSM
17393]
Length = 322
Score = 37.2 bits (85), Expect = 0.75, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQ 43
++GID G T +GIVD G ++SG+I + +
Sbjct: 6 VVGIDIGGTNTVFGIVDARG---TIIASGSIKTGAHE 39
>gi|120553401|ref|YP_957752.1| RNA-binding S1 domain-containing protein [Marinobacter aquaeolei
VT8]
gi|120323250|gb|ABM17565.1| RNA binding S1 domain protein [Marinobacter aquaeolei VT8]
Length = 774
Score = 37.2 bits (85), Expect = 0.75, Method: Composition-based stats.
Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 9/65 (13%)
Query: 8 IGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
+G+DPGLR TG ++D G V G I + Q + + ++
Sbjct: 328 LGLDPGLR-TGVKVAVIDGTGQ---VVDHGAIFPHA---PQNKWDQSIAQMAAWCQKYKI 380
Query: 66 EEAAV 70
E A+
Sbjct: 381 ELVAI 385
>gi|330827877|ref|YP_004390829.1| paral putative RNase R [Aeromonas veronii B565]
gi|328803013|gb|AEB48212.1| Paral putative RNase R [Aeromonas veronii B565]
Length = 785
Score = 37.2 bits (85), Expect = 0.78, Method: Composition-based stats.
Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 12/72 (16%)
Query: 1 MRKSIRIIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTD 58
MR ++ G+DPG+R TG +VD G V TI ++ Q + L++
Sbjct: 337 MRCTM---GLDPGIR-TGVKVAVVDATG---KLVDHATIYP---FEPKRQIDQSLKTLSE 386
Query: 59 VIKNWRPEEAAV 70
+ + + E ++
Sbjct: 387 LCQKHKVELISI 398
>gi|171854448|dbj|BAG16450.1| glucose kinase [Porphyromonas gingivalis]
Length = 319
Score = 37.2 bits (85), Expect = 0.79, Method: Composition-based stats.
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
++G+D G T +G+VD G+ V S +I + L + L G+ +I+
Sbjct: 6 VLGVDVGGTNTVFGVVDARGN---LVISSSIKTGAHNDLNDYIKDLTAGINQLIEQ 58
>gi|327438483|dbj|BAK14848.1| transcriptional accessory protein [Solibacillus silvestris StLB046]
Length = 723
Score = 37.2 bits (85), Expect = 0.80, Method: Composition-based stats.
Identities = 20/129 (15%), Positives = 40/129 (31%), Gaps = 17/129 (13%)
Query: 1 MRKSIRIIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTD 58
MR + ++G+DP R TG +VD G + G I + + +
Sbjct: 316 MRGKM-VLGVDPAYR-TGCKLAVVDETG---KMIEVGVIYPHTTSDPS----KAKATVKA 366
Query: 59 VIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGV 118
++K + A+ + A+ + Q A + V + V
Sbjct: 367 LLKKYPISIIAI------GNGTASRETEQFIAELLKEADGNIAYVIVNEAGASVYSASEV 420
Query: 119 GHGDKKQIH 127
+ +
Sbjct: 421 ARAEFPDLQ 429
>gi|53711853|ref|YP_097845.1| putative transcriptional repressor [Bacteroides fragilis YCH46]
gi|60680081|ref|YP_210225.1| ROK family transcriptional repressor [Bacteroides fragilis NCTC
9343]
gi|253564093|ref|ZP_04841550.1| RokA [Bacteroides sp. 3_2_5]
gi|265765219|ref|ZP_06093494.1| RokA [Bacteroides sp. 2_1_16]
gi|52214718|dbj|BAD47311.1| putative transcriptional repressor [Bacteroides fragilis YCH46]
gi|56156936|gb|AAV80416.1| RokA [Bacteroides fragilis]
gi|60491515|emb|CAH06267.1| putative ROK family transcriptional repressor [Bacteroides
fragilis NCTC 9343]
gi|251947869|gb|EES88151.1| RokA [Bacteroides sp. 3_2_5]
gi|263254603|gb|EEZ26037.1| RokA [Bacteroides sp. 2_1_16]
gi|301161609|emb|CBW21149.1| putative ROK family transcriptional repressor [Bacteroides
fragilis 638R]
Length = 326
Score = 37.2 bits (85), Expect = 0.81, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 6/42 (14%)
Query: 1 MRKSIR---IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVS 39
M S+ ++GID G T +GIVD G ++SG + +
Sbjct: 1 MNSSMEKPYVVGIDIGGTNTVFGIVDARG---TIIASGAVKT 39
>gi|325278915|ref|YP_004251457.1| Glucokinase [Odoribacter splanchnicus DSM 20712]
gi|324310724|gb|ADY31277.1| Glucokinase [Odoribacter splanchnicus DSM 20712]
Length = 320
Score = 37.2 bits (85), Expect = 0.82, Method: Composition-based stats.
Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 8 IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTD 58
+GID G T +G +D G+ +++ G I + + + L +LY +
Sbjct: 7 LGIDIGGTNTAFGFIDREGN---YLTEGNIPTAKHEDINDYLKELYLEIEK 54
>gi|171854444|dbj|BAG16448.1| glucose kinase [Porphyromonas gingivalis]
Length = 319
Score = 37.2 bits (85), Expect = 0.84, Method: Composition-based stats.
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
++G+D G T +G+VD G+ V S +I + L + L G+ +I+
Sbjct: 6 VLGVDVGGTNTVFGVVDARGN---LVISSSIKTGAHNDLNDYIKDLTAGINQLIEQ 58
>gi|319940744|ref|ZP_08015085.1| transcriptional accessory protein [Sutterella wadsworthensis
3_1_45B]
gi|319805804|gb|EFW02578.1| transcriptional accessory protein [Sutterella wadsworthensis
3_1_45B]
Length = 778
Score = 37.2 bits (85), Expect = 0.84, Method: Composition-based stats.
Identities = 14/66 (21%), Positives = 29/66 (43%), Gaps = 9/66 (13%)
Query: 7 IIGIDPGLRRTGW--GIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
++G+DPG R TG ++D G ++ ++ + R L D+ + ++
Sbjct: 337 VLGLDPGFR-TGVKTAVIDSTG---RVLAHDVLMMHTSAAQKQR---AEAQLIDLCRKYK 389
Query: 65 PEEAAV 70
P A+
Sbjct: 390 PAFIAI 395
>gi|288870608|ref|ZP_06114688.2| putative holliday junction resolvase [Clostridium hathewayi DSM
13479]
gi|288866578|gb|EFC98876.1| putative holliday junction resolvase [Clostridium hathewayi DSM
13479]
Length = 161
Score = 37.2 bits (85), Expect = 0.85, Method: Composition-based stats.
Identities = 16/82 (19%), Positives = 36/82 (43%), Gaps = 11/82 (13%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
MR +RI+G+D G + G + D G +++ + + R+ +L + + ++I
Sbjct: 14 MR--MRIMGLDYGSKTVGVAVSDSLG-----LTAQALETITRED-ENKLRKTCARIEELI 65
Query: 61 KNWRPEEAAVEQVFVNKDAVAT 82
+ + E + K+ T
Sbjct: 66 REYEIETIVL---GYPKNMNNT 84
>gi|160934895|ref|ZP_02082281.1| hypothetical protein CLOLEP_03770 [Clostridium leptum DSM 753]
gi|156866348|gb|EDO59720.1| hypothetical protein CLOLEP_03770 [Clostridium leptum DSM 753]
Length = 722
Score = 37.2 bits (85), Expect = 0.86, Method: Composition-based stats.
Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 9/65 (13%)
Query: 8 IGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
+G+DPG R TG +VD G + +G I R+ + ++ +I+ ++
Sbjct: 317 MGLDPGYR-TGCKVAVVDATG---RVLDTGVIYP---THSQSRVQEAKALVSRMIQKYQV 369
Query: 66 EEAAV 70
E A+
Sbjct: 370 EVIAI 374
>gi|256820223|ref|YP_003141502.1| Holliday junction resolvase YqgF [Capnocytophaga ochracea DSM
7271]
gi|256581806|gb|ACU92941.1| Holliday junction resolvase YqgF [Capnocytophaga ochracea DSM
7271]
Length = 143
Score = 37.2 bits (85), Expect = 0.92, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 28/71 (39%), Gaps = 4/71 (5%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+R++ ID G +RTG + D L ++SG LAF E + +
Sbjct: 1 MRLLAIDYGTKRTGIAVTD----PLQIIASGLCTVETSTLLAFLKQYTAEEAVEAFVIGQ 56
Query: 65 PEEAAVEQVFV 75
P+ E V
Sbjct: 57 PKRMNSEDSSV 67
>gi|237744826|ref|ZP_04575307.1| glucokinase [Fusobacterium sp. 7_1]
gi|260494624|ref|ZP_05814754.1| glucokinase [Fusobacterium sp. 3_1_33]
gi|229432055|gb|EEO42267.1| glucokinase [Fusobacterium sp. 7_1]
gi|260197786|gb|EEW95303.1| glucokinase [Fusobacterium sp. 3_1_33]
Length = 315
Score = 36.8 bits (84), Expect = 0.94, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 8 IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYE 54
IGID G T G+VD G+ ++S I + Q++ L +++E
Sbjct: 5 IGIDLGGTNTKIGVVDSEGN---LINSKIIKTHSHQNVDKTLERIWE 48
>gi|332163332|ref|YP_004299909.1| putative transcription accessory protein [Yersinia enterocolitica
subsp. palearctica 105.5R(r)]
gi|325667562|gb|ADZ44206.1| putative transcription accessory protein [Yersinia enterocolitica
subsp. palearctica 105.5R(r)]
gi|330862987|emb|CBX73120.1| protein yhgF [Yersinia enterocolitica W22703]
Length = 794
Score = 36.8 bits (84), Expect = 0.95, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 9/45 (20%)
Query: 1 MRKSIRIIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQ 43
MR ++ G+DPGLR TG +VD G V+ TI Q
Sbjct: 325 MRATM---GLDPGLR-TGVKVAVVDATG---KLVAYDTIYPHTGQ 362
>gi|238783100|ref|ZP_04627126.1| hypothetical protein yberc0001_1830 [Yersinia bercovieri ATCC
43970]
gi|238715896|gb|EEQ07882.1| hypothetical protein yberc0001_1830 [Yersinia bercovieri ATCC
43970]
Length = 788
Score = 36.8 bits (84), Expect = 0.95, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 9/45 (20%)
Query: 1 MRKSIRIIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQ 43
MR ++ G+DPGLR TG +VD G V+ TI Q
Sbjct: 325 MRATM---GLDPGLR-TGVKVAVVDATG---KLVAYDTIYPHTGQ 362
>gi|291087071|ref|ZP_06345320.2| putative Holliday junction resolvase [Clostridium sp. M62/1]
gi|291076386|gb|EFE13750.1| putative Holliday junction resolvase [Clostridium sp. M62/1]
Length = 175
Score = 36.8 bits (84), Expect = 0.96, Method: Composition-based stats.
Identities = 19/83 (22%), Positives = 39/83 (46%), Gaps = 10/83 (12%)
Query: 1 MRK-SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDV 59
M K +RI+G+D G + TG + D G +++ + + VR+ +L Q + ++
Sbjct: 31 MEKYQMRIMGLDFGSKTTGVAVSDPLG-----LTAQGLETIVRKD-ENKLRQTCARIEEL 84
Query: 60 IKNWRPEEAAVEQVFVNKDAVAT 82
I+ ++ E + K+ T
Sbjct: 85 IEEYQIEAIVL---GYPKNMNNT 104
>gi|262068091|ref|ZP_06027703.1| glucokinase [Fusobacterium periodonticum ATCC 33693]
gi|291378177|gb|EFE85695.1| glucokinase [Fusobacterium periodonticum ATCC 33693]
Length = 315
Score = 36.8 bits (84), Expect = 0.98, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 8 IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEE 67
IGID G T G+VD+ G+ + S I + +Q + L +++E +++
Sbjct: 5 IGIDLGGTNTKIGVVDLEGN---LIISKIIKTHSKQKVDKTLERIWETSKELLAKCDIPI 61
Query: 68 AAV 70
+V
Sbjct: 62 FSV 64
>gi|150010166|ref|YP_001304909.1| putative transcriptional repressor [Parabacteroides distasonis
ATCC 8503]
gi|149938590|gb|ABR45287.1| putative transcriptional repressor [Parabacteroides distasonis
ATCC 8503]
Length = 328
Score = 36.8 bits (84), Expect = 0.98, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQS 44
++GID G T +G+VD G + SG+I +
Sbjct: 6 VVGIDIGGTNTVFGVVDARG---TILYSGSIKTGKYAD 40
>gi|124026983|ref|YP_001012303.1| hypothetical protein Hbut_0082 [Hyperthermus butylicus DSM 5456]
gi|123977677|gb|ABM79958.1| conserved archaeal protein [Hyperthermus butylicus DSM 5456]
Length = 715
Score = 36.8 bits (84), Expect = 0.98, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVS 33
IIGIDPG+ TG I+D+ G + +S
Sbjct: 279 IIIGIDPGI-STGVAIIDIHGRFVTALS 305
>gi|318607824|emb|CBY29322.1| transcription accessory protein (S1 RNA-binding domain) [Yersinia
enterocolitica subsp. palearctica Y11]
Length = 794
Score = 36.8 bits (84), Expect = 0.99, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 9/45 (20%)
Query: 1 MRKSIRIIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQ 43
MR ++ G+DPGLR TG +VD G V+ TI Q
Sbjct: 325 MRATM---GLDPGLR-TGVKVAVVDATG---KLVAYDTIYPHTGQ 362
>gi|255012574|ref|ZP_05284700.1| putative transcriptional repressor [Bacteroides sp. 2_1_7]
gi|256838987|ref|ZP_05544497.1| conserved hypothetical protein [Parabacteroides sp. D13]
gi|262382547|ref|ZP_06075684.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
gi|298374534|ref|ZP_06984492.1| glucokinase [Bacteroides sp. 3_1_19]
gi|301308215|ref|ZP_07214169.1| glucokinase [Bacteroides sp. 20_3]
gi|256739906|gb|EEU53230.1| conserved hypothetical protein [Parabacteroides sp. D13]
gi|262295425|gb|EEY83356.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
gi|298268902|gb|EFI10557.1| glucokinase [Bacteroides sp. 3_1_19]
gi|300833685|gb|EFK64301.1| glucokinase [Bacteroides sp. 20_3]
Length = 328
Score = 36.8 bits (84), Expect = 0.99, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQS 44
++GID G T +G+VD G + SG+I +
Sbjct: 6 VVGIDIGGTNTVFGVVDARG---TILYSGSIKTGKYAD 40
>gi|123444176|ref|YP_001008146.1| putative transcription accessory protein [Yersinia enterocolitica
subsp. enterocolitica 8081]
gi|122091137|emb|CAL14020.1| putative transcription accessory protein [Yersinia enterocolitica
subsp. enterocolitica 8081]
Length = 794
Score = 36.8 bits (84), Expect = 0.99, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 9/45 (20%)
Query: 1 MRKSIRIIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQ 43
MR ++ G+DPGLR TG +VD G V+ TI Q
Sbjct: 325 MRATM---GLDPGLR-TGVKVAVVDATG---KLVAYDTIYPHTGQ 362
>gi|9964476|ref|NP_064944.1| hypothetical protein AMV162 [Amsacta moorei entomopoxvirus 'L']
gi|9944685|gb|AAG02868.1|AF250284_162 AMV162 [Amsacta moorei entomopoxvirus 'L']
Length = 163
Score = 36.8 bits (84), Expect = 0.99, Method: Composition-based stats.
Identities = 10/73 (13%), Positives = 29/73 (39%), Gaps = 3/73 (4%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+ I+ ID G++ G ++ + + + I + + +L + + +
Sbjct: 1 MIILSIDIGVKNLGLSMISLIDNKCNII---CIKENLPPLTSCKLYNKLNNIYNKYCIYN 57
Query: 65 PEEAAVEQVFVNK 77
++ +EQ F +
Sbjct: 58 VDKVIIEQQFRGR 70
>gi|118476006|ref|YP_893157.1| O-sialoglycoprotein endopeptidase [Bacillus thuringiensis str. Al
Hakam]
gi|118415231|gb|ABK83650.1| O-sialoglycoprotein endopeptidase [Bacillus thuringiensis str. Al
Hakam]
Length = 266
Score = 36.8 bits (84), Expect = 1.00, Method: Composition-based stats.
Identities = 17/111 (15%), Positives = 42/111 (37%), Gaps = 9/111 (8%)
Query: 4 SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
++++ ID G +++ G+ + G I++ + ++ + RL E L
Sbjct: 36 KMKVLAIDTSNYVMGVSLIE-EGNVI-----GEIITNLTKNHSVRLMPAVEQLLKECGV- 88
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKA 114
+P+E ++ V + + A +IP+ + + A
Sbjct: 89 KPKELT--KIVVAAGPGSYTGVRIGVTAAKTLAWSLQIPIVGVSSLEVVAA 137
>gi|326938030|gb|AEA13926.1| glycoprotease family protein [Bacillus thuringiensis serovar
chinensis CT-43]
Length = 230
Score = 36.8 bits (84), Expect = 1.0, Method: Composition-based stats.
Identities = 17/110 (15%), Positives = 42/110 (38%), Gaps = 9/110 (8%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
++++ ID G +++ G+ + G I++ + ++ + RL E L +
Sbjct: 1 MKVLAIDTSNYVMGVSLIE-EGNVI-----GEIITNLTKNHSVRLMPAVEQLLKECGV-K 53
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKA 114
P+E ++ V + + A +IP+ + + A
Sbjct: 54 PKELT--KIVVAAGPGSYTGVRIGVTAAKTLAWSLQIPIVGVSSLEVVAA 101
>gi|324324260|gb|ADY19520.1| hypothetical protein YBT020_01340 [Bacillus thuringiensis serovar
finitimus YBT-020]
Length = 230
Score = 36.8 bits (84), Expect = 1.0, Method: Composition-based stats.
Identities = 17/110 (15%), Positives = 42/110 (38%), Gaps = 9/110 (8%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
++++ ID G +++ G+ + G I++ + ++ + RL E L +
Sbjct: 1 MKVLAIDTSNYVMGVSLIE-EGNVI-----GEIITNLTKNHSVRLMPAVEQLLKECGV-K 53
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKA 114
P+E ++ V + + A +IP+ + + A
Sbjct: 54 PKELT--KIVVAAGPGSYTGVRIGVTAAKTLAWSLQIPIVGVSSLEVVAA 101
>gi|301051981|ref|YP_003790192.1| putative O-sialoglycoprotein endopeptidase [Bacillus anthracis CI]
gi|300374150|gb|ADK03054.1| putative O-sialoglycoprotein endopeptidase [Bacillus cereus biovar
anthracis str. CI]
Length = 230
Score = 36.8 bits (84), Expect = 1.0, Method: Composition-based stats.
Identities = 17/110 (15%), Positives = 42/110 (38%), Gaps = 9/110 (8%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
++++ ID G +++ G+ + G I++ + ++ + RL E L +
Sbjct: 1 MKVLAIDTSNYVMGVSLIE-EGNVI-----GEIITNLTKNHSVRLMPAVEQLLKECGV-K 53
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKA 114
P+E ++ V + + A +IP+ + + A
Sbjct: 54 PKELT--KIVVAAGPGSYTGVRIGVTAAKTLAWSLQIPIVGVSSLEVVAA 101
>gi|196046210|ref|ZP_03113437.1| conserved hypothetical protein [Bacillus cereus 03BB108]
gi|225862300|ref|YP_002747678.1| hypothetical protein BCA_0312 [Bacillus cereus 03BB102]
gi|196022955|gb|EDX61635.1| conserved hypothetical protein [Bacillus cereus 03BB108]
gi|225789842|gb|ACO30059.1| conserved hypothetical protein [Bacillus cereus 03BB102]
Length = 230
Score = 36.8 bits (84), Expect = 1.0, Method: Composition-based stats.
Identities = 17/110 (15%), Positives = 42/110 (38%), Gaps = 9/110 (8%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
++++ ID G +++ G+ + G I++ + ++ + RL E L +
Sbjct: 1 MKVLAIDTSNYVMGVSLIE-EGNVI-----GEIITNLTKNHSVRLMPAVEQLLKECGV-K 53
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKA 114
P+E ++ V + + A +IP+ + + A
Sbjct: 54 PKELT--KIVVAAGPGSYTGVRIGVTAAKTLAWSLQIPIVGVSSLEVVAA 101
>gi|206978306|ref|ZP_03239182.1| conserved hypothetical protein [Bacillus cereus H3081.97]
gi|217957818|ref|YP_002336362.1| hypothetical protein BCAH187_A0309 [Bacillus cereus AH187]
gi|222094018|ref|YP_002528070.1| o-sialoglycoprotein endopeptidase (glycoprotease) [Bacillus cereus
Q1]
gi|206743474|gb|EDZ54905.1| conserved hypothetical protein [Bacillus cereus H3081.97]
gi|217066671|gb|ACJ80921.1| conserved hypothetical protein [Bacillus cereus AH187]
gi|221238068|gb|ACM10778.1| probable O-sialoglycoprotein endopeptidase (glycoprotease)
[Bacillus cereus Q1]
Length = 230
Score = 36.8 bits (84), Expect = 1.0, Method: Composition-based stats.
Identities = 17/110 (15%), Positives = 42/110 (38%), Gaps = 9/110 (8%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
++++ ID G +++ G+ + G I++ + ++ + RL E L +
Sbjct: 1 MKVLAIDTSNYVMGVSLIE-EGNVI-----GEIITNLTKNHSVRLMPAVEQLLKECGV-K 53
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKA 114
P+E ++ V + + A +IP+ + + A
Sbjct: 54 PKELT--KIVVAAGPGSYTGVRIGVTAAKTLAWSLQIPIVGVSSLEVVAA 101
>gi|90023181|ref|YP_529008.1| general secretion pathway protein J [Saccharophagus degradans 2-40]
gi|89952781|gb|ABD82796.1| RNA binding S1 [Saccharophagus degradans 2-40]
Length = 772
Score = 36.8 bits (84), Expect = 1.0, Method: Composition-based stats.
Identities = 16/65 (24%), Positives = 24/65 (36%), Gaps = 9/65 (13%)
Query: 8 IGIDPGLRRTGW--GIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
IG+DPGLR TG +V G + G I R+ + + + K
Sbjct: 327 IGLDPGLR-TGVKLAVVGATG---EILDHGAIFP---TPPQNRIAEAEAVIVALCKKHNV 379
Query: 66 EEAAV 70
A+
Sbjct: 380 GLIAI 384
>gi|49479117|ref|YP_034585.1| O-sialoglycoprotein endopeptidase (glycoprotease) [Bacillus
thuringiensis serovar konkukian str. 97-27]
gi|196036851|ref|ZP_03104239.1| conserved hypothetical protein [Bacillus cereus W]
gi|196041068|ref|ZP_03108364.1| conserved hypothetical protein [Bacillus cereus NVH0597-99]
gi|218901451|ref|YP_002449285.1| hypothetical protein BCAH820_0285 [Bacillus cereus AH820]
gi|300119519|ref|ZP_07057071.1| O-sialoglycoprotein endopeptidase [Bacillus cereus SJ1]
gi|49330673|gb|AAT61319.1| probable O-sialoglycoprotein endopeptidase (glycoprotease)
[Bacillus thuringiensis serovar konkukian str. 97-27]
gi|195990533|gb|EDX54513.1| conserved hypothetical protein [Bacillus cereus W]
gi|196028003|gb|EDX66614.1| conserved hypothetical protein [Bacillus cereus NVH0597-99]
gi|218538095|gb|ACK90493.1| conserved hypothetical protein [Bacillus cereus AH820]
gi|298723109|gb|EFI63999.1| O-sialoglycoprotein endopeptidase [Bacillus cereus SJ1]
Length = 230
Score = 36.8 bits (84), Expect = 1.0, Method: Composition-based stats.
Identities = 17/110 (15%), Positives = 42/110 (38%), Gaps = 9/110 (8%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
++++ ID G +++ G+ + G I++ + ++ + RL E L +
Sbjct: 1 MKVLAIDTSNYVMGVSLIE-EGNVI-----GEIITNLTKNHSVRLMPAVEQLLKECGV-K 53
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKA 114
P+E ++ V + + A +IP+ + + A
Sbjct: 54 PKELT--KIVVAAGPGSYTGVRIGVTAAKTLAWSLQIPIVGVSSLEVVAA 101
>gi|52144983|ref|YP_081847.1| O-sialoglycoprotein endopeptidase (glycoprotease) [Bacillus cereus
E33L]
gi|51978452|gb|AAU20002.1| probable O-sialoglycoprotein endopeptidase (glycoprotease)
[Bacillus cereus E33L]
Length = 230
Score = 36.8 bits (84), Expect = 1.0, Method: Composition-based stats.
Identities = 17/110 (15%), Positives = 42/110 (38%), Gaps = 9/110 (8%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
++++ ID G +++ G+ + G I++ + ++ + RL E L +
Sbjct: 1 MKVLAIDTSNYVMGVSLIE-EGNVI-----GEIITNLTKNHSVRLMPAVEQLLKECGV-K 53
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKA 114
P+E ++ V + + A +IP+ + + A
Sbjct: 54 PKELT--KIVVAAGPGSYTGVRIGVTAAKTLAWSLQIPIVGVSSLEVVAA 101
>gi|42779361|ref|NP_976608.1| hypothetical protein BCE_0280 [Bacillus cereus ATCC 10987]
gi|42735276|gb|AAS39216.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
Length = 230
Score = 36.8 bits (84), Expect = 1.0, Method: Composition-based stats.
Identities = 17/110 (15%), Positives = 42/110 (38%), Gaps = 9/110 (8%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
++++ ID G +++ G+ + G I++ + ++ + RL E L +
Sbjct: 1 MKVLAIDTSNYVMGVSLIE-EGNVI-----GEIITNLTKNHSVRLMPAVEQLLKECGV-K 53
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKA 114
P+E ++ V + + A +IP+ + + A
Sbjct: 54 PKELT--KIVVAAGPGSYTGVRIGVTAAKTLAWSLQIPIVGVSSLEVVAA 101
>gi|47567498|ref|ZP_00238210.1| glycoprotease protein family [Bacillus cereus G9241]
gi|47555900|gb|EAL14239.1| glycoprotease protein family [Bacillus cereus G9241]
Length = 230
Score = 36.8 bits (84), Expect = 1.0, Method: Composition-based stats.
Identities = 17/110 (15%), Positives = 42/110 (38%), Gaps = 9/110 (8%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
++++ ID G +++ G+ + G I++ + ++ + RL E L +
Sbjct: 1 MKVLAIDTSNYVMGVSLIE-EGNVI-----GEIITNLTKNHSVRLMPAVEQLLKECGV-K 53
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKA 114
P+E ++ V + + A +IP+ + + A
Sbjct: 54 PKELT--KIVVAAGPGSYTGVRIGVTAAKTLAWSLQIPIVGVSSLEVVAA 101
>gi|30260435|ref|NP_842812.1| hypothetical protein BA_0259 [Bacillus anthracis str. Ames]
gi|47525518|ref|YP_016867.1| hypothetical protein GBAA_0259 [Bacillus anthracis str. 'Ames
Ancestor']
gi|49183277|ref|YP_026529.1| hypothetical protein BAS0245 [Bacillus anthracis str. Sterne]
gi|65317686|ref|ZP_00390645.1| COG1214: Inactive homolog of metal-dependent proteases, putative
molecular chaperone [Bacillus anthracis str. A2012]
gi|165873319|ref|ZP_02217923.1| conserved hypothetical protein [Bacillus anthracis str. A0488]
gi|167634111|ref|ZP_02392433.1| conserved hypothetical protein [Bacillus anthracis str. A0442]
gi|167640095|ref|ZP_02398362.1| conserved hypothetical protein [Bacillus anthracis str. A0193]
gi|170687710|ref|ZP_02878925.1| conserved hypothetical protein [Bacillus anthracis str. A0465]
gi|170709444|ref|ZP_02899850.1| conserved hypothetical protein [Bacillus anthracis str. A0389]
gi|177655760|ref|ZP_02937035.1| conserved hypothetical protein [Bacillus anthracis str. A0174]
gi|190567425|ref|ZP_03020339.1| conserved hypothetical protein [Bacillus anthracis Tsiankovskii-I]
gi|227812926|ref|YP_002812935.1| hypothetical protein BAMEG_0304 [Bacillus anthracis str. CDC 684]
gi|229603031|ref|YP_002864885.1| hypothetical protein BAA_0302 [Bacillus anthracis str. A0248]
gi|254686655|ref|ZP_05150513.1| hypothetical protein BantC_22825 [Bacillus anthracis str.
CNEVA-9066]
gi|254724722|ref|ZP_05186505.1| hypothetical protein BantA1_20014 [Bacillus anthracis str. A1055]
gi|254735448|ref|ZP_05193156.1| hypothetical protein BantWNA_09821 [Bacillus anthracis str. Western
North America USA6153]
gi|254744192|ref|ZP_05201874.1| hypothetical protein BantKB_24846 [Bacillus anthracis str. Kruger
B]
gi|254756022|ref|ZP_05208053.1| hypothetical protein BantV_26449 [Bacillus anthracis str. Vollum]
gi|254761672|ref|ZP_05213690.1| hypothetical protein BantA9_25459 [Bacillus anthracis str.
Australia 94]
gi|30253756|gb|AAP24298.1| conserved hypothetical protein [Bacillus anthracis str. Ames]
gi|47500666|gb|AAT29342.1| conserved hypothetical protein [Bacillus anthracis str. 'Ames
Ancestor']
gi|49177204|gb|AAT52580.1| conserved hypothetical protein [Bacillus anthracis str. Sterne]
gi|164710939|gb|EDR16512.1| conserved hypothetical protein [Bacillus anthracis str. A0488]
gi|167511906|gb|EDR87285.1| conserved hypothetical protein [Bacillus anthracis str. A0193]
gi|167530425|gb|EDR93140.1| conserved hypothetical protein [Bacillus anthracis str. A0442]
gi|170125648|gb|EDS94569.1| conserved hypothetical protein [Bacillus anthracis str. A0389]
gi|170668237|gb|EDT18985.1| conserved hypothetical protein [Bacillus anthracis str. A0465]
gi|172079989|gb|EDT65091.1| conserved hypothetical protein [Bacillus anthracis str. A0174]
gi|190561552|gb|EDV15523.1| conserved hypothetical protein [Bacillus anthracis Tsiankovskii-I]
gi|227005496|gb|ACP15239.1| conserved hypothetical protein [Bacillus anthracis str. CDC 684]
gi|229267439|gb|ACQ49076.1| conserved hypothetical protein [Bacillus anthracis str. A0248]
Length = 230
Score = 36.8 bits (84), Expect = 1.0, Method: Composition-based stats.
Identities = 17/110 (15%), Positives = 42/110 (38%), Gaps = 9/110 (8%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
++++ ID G +++ G+ + G I++ + ++ + RL E L +
Sbjct: 1 MKVLAIDTSNYVMGVSLIE-EGNVI-----GEIITNLTKNHSVRLMPAVEQLLKECGV-K 53
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKA 114
P+E ++ V + + A +IP+ + + A
Sbjct: 54 PKELT--KIVVAAGPGSYTGVRIGVTAAKTLAWSLQIPIVGVSSLEVVAA 101
>gi|311693107|gb|ADP95980.1| transcriptional accessory protein [marine bacterium HP15]
Length = 779
Score = 36.8 bits (84), Expect = 1.0, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 9/65 (13%)
Query: 8 IGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
+G+DPGLR TG ++D G G I Q+ R E L + ++
Sbjct: 328 LGLDPGLR-TGVKVAVIDGTGQVA---GHGAIFPHAPQNQWDR---SIEQLAAWCREYKI 380
Query: 66 EEAAV 70
E A+
Sbjct: 381 ELVAI 385
>gi|126666628|ref|ZP_01737606.1| Transcriptional accessory protein [Marinobacter sp. ELB17]
gi|126629016|gb|EAZ99635.1| Transcriptional accessory protein [Marinobacter sp. ELB17]
Length = 483
Score = 36.8 bits (84), Expect = 1.1, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 26/67 (38%), Gaps = 13/67 (19%)
Query: 8 IGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQL--YEGLTDVIKNW 63
+G+DPGLR TG ++D G + G I A R E L + +
Sbjct: 326 LGLDPGLR-TGVKVAVIDGIGQ---VLDHGAI-----FPHAPRNQWEASIEQLRKWCRQY 376
Query: 64 RPEEAAV 70
E A+
Sbjct: 377 NIELVAI 383
>gi|238797303|ref|ZP_04640804.1| hypothetical protein ymoll0001_3680 [Yersinia mollaretii ATCC
43969]
gi|238718940|gb|EEQ10755.1| hypothetical protein ymoll0001_3680 [Yersinia mollaretii ATCC
43969]
Length = 788
Score = 36.8 bits (84), Expect = 1.1, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 9/45 (20%)
Query: 1 MRKSIRIIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQ 43
MR ++ G+DPGLR TG +VD G V+ TI Q
Sbjct: 325 MRATM---GLDPGLR-TGVKVAVVDATG---KLVAYDTIYPHTGQ 362
>gi|254302990|ref|ZP_04970348.1| glucokinase [Fusobacterium nucleatum subsp. polymorphum ATCC
10953]
gi|148323182|gb|EDK88432.1| glucokinase [Fusobacterium nucleatum subsp. polymorphum ATCC
10953]
Length = 315
Score = 36.8 bits (84), Expect = 1.1, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 8 IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYE 54
IGID G T GIVD G+ ++S I + Q++ L +++E
Sbjct: 5 IGIDLGGTNTKIGIVDSEGN---LINSKIIKTHSHQNVDKTLERIWE 48
>gi|15602992|ref|NP_246064.1| hypothetical protein PM1127 [Pasteurella multocida subsp.
multocida str. Pm70]
gi|12721472|gb|AAK03211.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
Length = 1056
Score = 36.8 bits (84), Expect = 1.1, Method: Composition-based stats.
Identities = 8/32 (25%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDN--LCFVSSGT 36
I+G+D G+ GW +V++ + + + G
Sbjct: 9 ILGLDLGIASVGWAVVEINENEDPIGLIDVGV 40
>gi|227498473|ref|ZP_03928619.1| conserved hypothetical protein [Acidaminococcus sp. D21]
gi|226903931|gb|EEH89849.1| conserved hypothetical protein [Acidaminococcus sp. D21]
Length = 138
Score = 36.8 bits (84), Expect = 1.1, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 6/52 (11%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSG--TIVSCVRQSLAFRLCQLYE 54
+RI+G+D G R G + D G ++ G TI ++ RL +L +
Sbjct: 1 MRIMGLDLGTRTIGVAVSDEMG----LIARGIETIRRSGTKNDLARLHELVQ 48
>gi|322514772|ref|ZP_08067796.1| hypothetical protein HMPREF0027_1548 [Actinobacillus ureae ATCC
25976]
gi|322119268|gb|EFX91396.1| hypothetical protein HMPREF0027_1548 [Actinobacillus ureae ATCC
25976]
Length = 400
Score = 36.8 bits (84), Expect = 1.2, Method: Composition-based stats.
Identities = 9/32 (28%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 7 IIGIDPGLRRTGWGIVDVA--GDNLCFVSSGT 36
I+G+D G+ GW +V++ + L + G
Sbjct: 9 ILGLDLGIASVGWAVVEIDEQENPLGLIDVGV 40
>gi|307256472|ref|ZP_07538254.1| CRISPR-associated protein, Csn1 family [Actinobacillus
pleuropneumoniae serovar 10 str. D13039]
gi|306865102|gb|EFM97003.1| CRISPR-associated protein, Csn1 family [Actinobacillus
pleuropneumoniae serovar 10 str. D13039]
Length = 1054
Score = 36.8 bits (84), Expect = 1.2, Method: Composition-based stats.
Identities = 9/32 (28%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 7 IIGIDPGLRRTGWGIVDVA--GDNLCFVSSGT 36
I+G+D G+ GW +V++ + L + G
Sbjct: 9 ILGLDLGIASVGWAVVEIDEQENPLGLIDVGV 40
>gi|109948104|ref|YP_665332.1| phage-related CUP0950-like protein [Helicobacter acinonychis str.
Sheeba]
gi|109715325|emb|CAK00333.1| phage-related CUP0950-like protein [Helicobacter acinonychis str.
Sheeba]
Length = 517
Score = 36.8 bits (84), Expect = 1.2, Method: Composition-based stats.
Identities = 18/79 (22%), Positives = 29/79 (36%), Gaps = 3/79 (3%)
Query: 76 NKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMP 135
NK+ + + + I + Y + + G + +QI L P
Sbjct: 416 NKELLNDAIVCYTPSRKISKVDKIKAMRPFYNTGFLVFSHSGN---NTEQIEKELFSFNP 472
Query: 136 ESFFKGKDAADALAIAVCH 154
+ FK D DALA A+ H
Sbjct: 473 DKPFKKDDCIDALASAITH 491
>gi|295402568|ref|ZP_06812517.1| Tex-like protein-like protein [Geobacillus thermoglucosidasius
C56-YS93]
gi|294975416|gb|EFG51045.1| Tex-like protein-like protein [Geobacillus thermoglucosidasius
C56-YS93]
Length = 728
Score = 36.8 bits (84), Expect = 1.2, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 9/67 (13%)
Query: 6 RIIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
++GIDP R TG +VD G L I R+ + E L +I+ +
Sbjct: 321 IVLGIDPAYR-TGCKLAVVDETGKLLK------IDVIYPHPPQPRIEEAKEKLIRMIEEY 373
Query: 64 RPEEAAV 70
E A+
Sbjct: 374 NVEMIAI 380
>gi|312112520|ref|YP_003990836.1| Tex-like protein [Geobacillus sp. Y4.1MC1]
gi|311217621|gb|ADP76225.1| Tex-like protein [Geobacillus sp. Y4.1MC1]
Length = 728
Score = 36.8 bits (84), Expect = 1.2, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 9/67 (13%)
Query: 6 RIIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
++GIDP R TG +VD G L I R+ + E L +I+ +
Sbjct: 321 IVLGIDPAYR-TGCKLAVVDETGKLLK------IDVIYPHPPQPRIEEAKEKLIRMIEEY 373
Query: 64 RPEEAAV 70
E A+
Sbjct: 374 NVEMIAI 380
>gi|160887996|ref|ZP_02068999.1| hypothetical protein BACUNI_00400 [Bacteroides uniformis ATCC
8492]
gi|270295631|ref|ZP_06201832.1| conserved hypothetical protein [Bacteroides sp. D20]
gi|317478614|ref|ZP_07937771.1| ROK family protein [Bacteroides sp. 4_1_36]
gi|156862495|gb|EDO55926.1| hypothetical protein BACUNI_00400 [Bacteroides uniformis ATCC
8492]
gi|270274878|gb|EFA20739.1| conserved hypothetical protein [Bacteroides sp. D20]
gi|290770241|gb|ADD61997.1| putative protein [uncultured organism]
gi|316905255|gb|EFV27052.1| ROK family protein [Bacteroides sp. 4_1_36]
Length = 326
Score = 36.4 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
Query: 1 MRKSIR---IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQS 44
M ++ ++GID G T +GIVD G ++S +I + +
Sbjct: 1 MNSNMEKPYVVGIDIGGTNTVFGIVDARG---TIIASSSIKTGAYED 44
>gi|119719648|ref|YP_920143.1| hypothetical protein Tpen_0738 [Thermofilum pendens Hrk 5]
gi|119524768|gb|ABL78140.1| Protein of unknown function DUF460 [Thermofilum pendens Hrk 5]
Length = 662
Score = 36.4 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 22/92 (23%), Positives = 36/92 (39%), Gaps = 17/92 (18%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
I+G+DPG+ TG+ ++D +G L V S RL + + ++ RP
Sbjct: 257 IVGVDPGMA-TGFAVLDFSGRVL-AVDS------------RRLLGRGQLVRELYGFGRPA 302
Query: 67 EAAVEQVFVNKDAVATLKLGQARAIAILSPAL 98
A + VN KL + P+
Sbjct: 303 IVATD---VNPPPAYVKKLASTLGAVLYVPSR 331
>gi|78221406|ref|YP_383153.1| RNA binding S1 [Geobacter metallireducens GS-15]
gi|78192661|gb|ABB30428.1| RNA binding S1 [Geobacter metallireducens GS-15]
Length = 757
Score = 36.4 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 25/106 (23%), Positives = 40/106 (37%), Gaps = 11/106 (10%)
Query: 8 IGIDPGLRRTG--WGIVDVAGDNLCFV----SSGTIVSCVRQSLAFRLCQLYE----GLT 57
+GIDPGLR TG VD G L V +G + RL + ++ +
Sbjct: 327 LGIDPGLR-TGSKLAAVDGTGRFLEHVTIYPHTGEARVAGAKKDFLRLVEAHDVEMIAVG 385
Query: 58 DVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPV 103
+ E+ A E + V + + +A A + +AR
Sbjct: 386 NGTAGREIEQFAKETLAEAGKRVPVVMVSEAGASVYSASEIAREEF 431
>gi|15613109|ref|NP_241412.1| glycoprotein endopeptidase [Bacillus halodurans C-125]
gi|10173159|dbj|BAB04265.1| glycoprotein endopeptidase [Bacillus halodurans C-125]
Length = 236
Score = 36.4 bits (83), Expect = 1.3, Method: Composition-based stats.
Identities = 18/108 (16%), Positives = 40/108 (37%), Gaps = 9/108 (8%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
++ + ID G I+D G+ L G + + ++++ + RL E L +
Sbjct: 1 MKTLAIDTSTYVMGVAILD--GNQL----VGEVTTNLKKNHSLRLMPAIESLMKEVGV-A 53
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIK 112
P E +E++ V + + + A I + + +
Sbjct: 54 PNE--LERIVVAQGPGSYTGVRIGVTTAKTLAWSLGISLVGVSSLEVM 99
>gi|315659848|ref|ZP_07912707.1| conserved hypothetical protein [Staphylococcus lugdunensis
M23590]
gi|315495136|gb|EFU83472.1| conserved hypothetical protein [Staphylococcus lugdunensis
M23590]
Length = 1054
Score = 36.4 bits (83), Expect = 1.3, Method: Composition-based stats.
Identities = 9/30 (30%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGT 36
I+G+D G+ G+G++D N+ + +G
Sbjct: 6 ILGLDIGITSVGYGLIDYETKNI--IDAGV 33
>gi|237740763|ref|ZP_04571244.1| glucokinase [Fusobacterium sp. 2_1_31]
gi|229422780|gb|EEO37827.1| glucokinase [Fusobacterium sp. 2_1_31]
Length = 315
Score = 36.4 bits (83), Expect = 1.3, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 8 IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEE 67
IGID G T G+VD+ G+ + S I + +Q + L +++E +++
Sbjct: 5 IGIDLGGTNTKIGVVDLEGN---LIISKIIKTHSKQKVDKTLERIWETSKELLVKCDIPL 61
Query: 68 AAV 70
+V
Sbjct: 62 FSV 64
>gi|219667445|ref|YP_002457880.1| RNA binding S1 domain protein [Desulfitobacterium hafniense DCB-2]
gi|219537705|gb|ACL19444.1| RNA binding S1 domain protein [Desulfitobacterium hafniense DCB-2]
Length = 721
Score = 36.4 bits (83), Expect = 1.3, Method: Composition-based stats.
Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 9/66 (13%)
Query: 7 IIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
++G+DPG R TG + +VD G G I + + + L D I ++
Sbjct: 314 VLGLDPGFR-TGCKFAVVDDTG---KLFHVGVIYP---HPPQNKREEAKKVLRDTIAKYQ 366
Query: 65 PEEAAV 70
E A+
Sbjct: 367 VEVIAI 372
>gi|89896725|ref|YP_520212.1| hypothetical protein DSY3979 [Desulfitobacterium hafniense Y51]
gi|89336173|dbj|BAE85768.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 721
Score = 36.4 bits (83), Expect = 1.3, Method: Composition-based stats.
Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 9/66 (13%)
Query: 7 IIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
++G+DPG R TG + +VD G G I + + + L D I ++
Sbjct: 314 VLGLDPGFR-TGCKFAVVDDTG---KLFHVGVIYP---HPPQNKREEAKKVLRDTIAKYQ 366
Query: 65 PEEAAV 70
E A+
Sbjct: 367 VEVIAI 372
>gi|315225648|ref|ZP_07867456.1| Holliday junction resolvase [Capnocytophaga ochracea F0287]
gi|314944375|gb|EFS96416.1| Holliday junction resolvase [Capnocytophaga ochracea F0287]
Length = 143
Score = 36.4 bits (83), Expect = 1.3, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 28/71 (39%), Gaps = 4/71 (5%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+R++ ID G +RTG + D L ++SG LAF E + +
Sbjct: 1 MRLLAIDYGTKRTGIAVTD----PLQIIASGLCTVETPTLLAFLKQYTAEEAVEAFVIGQ 56
Query: 65 PEEAAVEQVFV 75
P+ E V
Sbjct: 57 PKRMNSEDSSV 67
>gi|330814160|ref|YP_004358399.1| putative Holliday junction resolvase [Candidatus Pelagibacter sp.
IMCC9063]
gi|327487255|gb|AEA81660.1| putative Holliday junction resolvase [Candidatus Pelagibacter sp.
IMCC9063]
Length = 156
Score = 36.4 bits (83), Expect = 1.3, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 9/65 (13%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
R++GIDPG R G I D + I + A +L L E L +I
Sbjct: 21 RLLGIDPGKRNVGIAICD-----PSHL----IATPYETIQAKKLKNLLEELDKIIIENNI 71
Query: 66 EEAAV 70
+ V
Sbjct: 72 KGIVV 76
>gi|313669044|ref|YP_004049328.1| hypothetical protein NLA_17660 [Neisseria lactamica ST-640]
gi|313006506|emb|CBN87970.1| hypothetical protein NLA_17660 [Neisseria lactamica 020-06]
Length = 1082
Score = 36.4 bits (83), Expect = 1.3, Method: Composition-based stats.
Identities = 8/32 (25%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 7 IIGIDPGLRRTGWGIVDVAG--DNLCFVSSGT 36
I+G+D G+ GW +V++ + + + G
Sbjct: 12 ILGLDIGIASVGWAMVEIDKEENPIRLIDLGV 43
>gi|309378418|emb|CBX22971.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 241
Score = 36.4 bits (83), Expect = 1.3, Method: Composition-based stats.
Identities = 8/32 (25%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 7 IIGIDPGLRRTGWGIVDVAG--DNLCFVSSGT 36
I+G+D G+ GW +V++ + + + G
Sbjct: 12 ILGLDIGIASVGWAMVEIDKEENPIRLIDLGV 43
>gi|296120510|ref|YP_003628288.1| ATP-binding region ATPase domain protein [Planctomyces limnophilus
DSM 3776]
gi|296012850|gb|ADG66089.1| ATP-binding region ATPase domain protein [Planctomyces limnophilus
DSM 3776]
Length = 567
Score = 36.4 bits (83), Expect = 1.4, Method: Composition-based stats.
Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 7/75 (9%)
Query: 10 IDPGLRRT-------GWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
ID GL +T GWGIVD + + + + +L QL + DV++
Sbjct: 358 IDLGLGKTDTELIRKGWGIVDKNQGKIYNLVMDMLTFSKERQPEMKLSQLNDVAQDVVEL 417
Query: 63 WRPEEAAVEQVFVNK 77
+P+ VE + +
Sbjct: 418 MQPQAGEVETKLIFQ 432
>gi|197119399|ref|YP_002139826.1| S1 RNA-binding domain-containing transcriptional accessory protein
[Geobacter bemidjiensis Bem]
gi|197088759|gb|ACH40030.1| S1 RNA-binding domain-containing transcriptional accessory protein
[Geobacter bemidjiensis Bem]
Length = 754
Score = 36.4 bits (83), Expect = 1.5, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
Query: 6 RIIGIDPGLRRTG--WGIVDVAGDNLCFV 32
R++GIDPGLR TG + G L V
Sbjct: 323 RVLGIDPGLR-TGCKLAAISETGRFLEHV 350
>gi|297527129|ref|YP_003669153.1| Protein of unknown function DUF460 [Staphylothermus hellenicus DSM
12710]
gi|297256045|gb|ADI32254.1| Protein of unknown function DUF460 [Staphylothermus hellenicus DSM
12710]
Length = 671
Score = 36.4 bits (83), Expect = 1.5, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSS 34
IIGIDPG+ TG ++D+ G L SS
Sbjct: 258 IIGIDPGI-STGIAVIDLDGTPLFLHSS 284
>gi|253699853|ref|YP_003021042.1| RNA binding S1 domain protein [Geobacter sp. M21]
gi|251774703|gb|ACT17284.1| RNA binding S1 domain protein [Geobacter sp. M21]
Length = 756
Score = 36.4 bits (83), Expect = 1.5, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
Query: 6 RIIGIDPGLRRTG--WGIVDVAGDNLCFV 32
R++GIDPGLR TG + G L V
Sbjct: 325 RVLGIDPGLR-TGCKLAAISETGRFLEHV 352
>gi|169842557|ref|ZP_02875662.1| hypothetical protein cdivTM_35644 [candidate division TM7
single-cell isolate TM7a]
Length = 64
Score = 36.4 bits (83), Expect = 1.5, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 103 VSEYAPNTIKKAVIGVGHGDKKQIH 127
++EY P IK + G G DK+Q+
Sbjct: 5 IAEYTPLQIKNTLTGYGKADKRQVQ 29
>gi|1353077|sp|P13004|YLYS_BPPHV RecName: Full=Uncharacterized protein near lysin gene
gi|312420|emb|CAA34299.1| unnamed protein product [Lactococcus phage phi-vML3]
Length = 152
Score = 36.4 bits (83), Expect = 1.5, Method: Composition-based stats.
Identities = 19/139 (13%), Positives = 46/139 (33%), Gaps = 15/139 (10%)
Query: 17 TGWGIVDVAGDNLCFVSSGTIVS-CVRQSLAFRLCQLYEGLTDVIKNW--RPEEAAVEQV 73
TG+ G + G+I + +++ R + + D+I + + A+E
Sbjct: 10 TGYAF-RKDGQ----LYVGSIKAYNAKKNAWERTFDIVNAIKDIIDEFDLKDYHMAIETP 64
Query: 74 FVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKML 133
+ ++ ++ L I + + + + G ++Q L
Sbjct: 65 IMGRNRKHSITLANCNGYFIGAIDGLVNGYTFIDNSKWCSYHLISGK--REQRKEESLEL 122
Query: 134 MPESFFKGKDA-----ADA 147
+ ++ D ADA
Sbjct: 123 LKQTGLVPLDCKDDNMADA 141
>gi|327405121|ref|YP_004345959.1| CRISPR-associated protein, Csn1 family [Fluviicola taffensis DSM
16823]
gi|327320629|gb|AEA45121.1| CRISPR-associated protein, Csn1 family [Fluviicola taffensis DSM
16823]
Length = 1458
Score = 36.4 bits (83), Expect = 1.5, Method: Composition-based stats.
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 4/37 (10%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIV--DVAGDNLCFVSSG 35
M K+ I+G+D G GW ++ D + G
Sbjct: 1 MTKT--ILGLDLGTNSIGWALINQDFDNKKGEILGMG 35
>gi|189425601|ref|YP_001952778.1| RNA binding S1 domain protein [Geobacter lovleyi SZ]
gi|189421860|gb|ACD96258.1| RNA binding S1 domain protein [Geobacter lovleyi SZ]
Length = 762
Score = 36.4 bits (83), Expect = 1.5, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 30/74 (40%), Gaps = 9/74 (12%)
Query: 6 RIIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
R++GIDPGLR G VD G L V TI A R+ Q L +++
Sbjct: 325 RVLGIDPGLRA-GSKLAAVDQTGRFLEHV---TIYPHTG---AGRVDQARADLLRLVEAH 377
Query: 64 RPEEAAVEQVFVNK 77
E A+ +
Sbjct: 378 GIEMIAIGNGTAGR 391
>gi|88703318|ref|ZP_01101034.1| S1 RNA binding domain protein [Congregibacter litoralis KT71]
gi|88702032|gb|EAQ99135.1| S1 RNA binding domain protein [Congregibacter litoralis KT71]
Length = 792
Score = 36.4 bits (83), Expect = 1.5, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 9/65 (13%)
Query: 8 IGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
+G+DPGLR TG +VD G V GTI + + L +I+
Sbjct: 328 MGLDPGLR-TGVKVAVVDATG---KLVDQGTIYP---TPPQNKTREAAATLMTMIRRHSV 380
Query: 66 EEAAV 70
E ++
Sbjct: 381 ELISI 385
>gi|330720456|gb|EGG98764.1| Transcription accessory protein (S1 RNA-binding domain) [gamma
proteobacterium IMCC2047]
Length = 561
Score = 36.0 bits (82), Expect = 1.6, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 24/65 (36%), Gaps = 9/65 (13%)
Query: 8 IGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
IG+DPGLR TG +VD G + TI R+ + L +
Sbjct: 115 IGLDPGLR-TGVKVAVVDETG---KLLDYDTIYP---TPPQKRVREAEAVLLMFCRKHAV 167
Query: 66 EEAAV 70
A+
Sbjct: 168 NLIAI 172
>gi|298504349|gb|ADI83072.1| S1 RNA-binding domain-containing transcriptional accessory protein
[Geobacter sulfurreducens KN400]
Length = 761
Score = 36.0 bits (82), Expect = 1.7, Method: Composition-based stats.
Identities = 21/87 (24%), Positives = 31/87 (35%), Gaps = 8/87 (9%)
Query: 6 RIIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
R++G+DPGLR TG VD G L V TI ++ +++
Sbjct: 325 RVLGVDPGLR-TGSKLAAVDGTGRFLEHV---TIYPHAGGE--GKVAAAKREFLRLVECH 378
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARA 90
E AV ++ K A
Sbjct: 379 GIEMVAVGNGTAGREMEQFAKETLAEG 405
>gi|295092198|emb|CBK78305.1| conserved hypothetical protein TIGR00250 [Clostridium cf.
saccharolyticum K10]
Length = 140
Score = 36.0 bits (82), Expect = 1.7, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 37/78 (47%), Gaps = 9/78 (11%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+G+D G + TG + D G +++ + + VR+ +L Q + ++I+ ++
Sbjct: 1 MRIMGLDFGSKTTGVAVSDPLG-----LTAQGLETIVRKD-ENKLRQTCARIEELIEEYQ 54
Query: 65 PEEAAVEQVFVNKDAVAT 82
E + K+ T
Sbjct: 55 IEAIVL---GYPKNMNNT 69
>gi|39995345|ref|NP_951296.1| S1 RNA-binding domain-containing protein [Geobacter sulfurreducens
PCA]
gi|39982107|gb|AAR33569.1| S1 RNA binding domain protein [Geobacter sulfurreducens PCA]
Length = 761
Score = 36.0 bits (82), Expect = 1.7, Method: Composition-based stats.
Identities = 21/87 (24%), Positives = 31/87 (35%), Gaps = 8/87 (9%)
Query: 6 RIIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
R++G+DPGLR TG VD G L V TI ++ +++
Sbjct: 325 RVLGVDPGLR-TGSKLAAVDGTGRFLEHV---TIYPHAGGE--GKVAAAKREFLRLVECH 378
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARA 90
E AV ++ K A
Sbjct: 379 GIEMVAVGNGTAGREMEQFAKETLAEG 405
>gi|27363759|ref|NP_759287.1| D-alanyl-D-alanine carboxypeptidase [Vibrio vulnificus CMCP6]
gi|320157161|ref|YP_004189540.1| D-alanyl-D-alanine carboxypeptidase [Vibrio vulnificus MO6-24/O]
gi|27359875|gb|AAO08814.1| D-alanyl-D-alanine carboxypeptidase [Vibrio vulnificus CMCP6]
gi|319932473|gb|ADV87337.1| D-alanyl-D-alanine carboxypeptidase [Vibrio vulnificus MO6-24/O]
Length = 393
Score = 36.0 bits (82), Expect = 1.7, Method: Composition-based stats.
Identities = 15/83 (18%), Positives = 30/83 (36%), Gaps = 4/83 (4%)
Query: 3 KSIRIIGIDPG-LRRTGWGIVD-VAGDNLCFVS--SGTIVSCVRQSLAFRLCQLYEGLTD 58
KS+ + GI G G+ +V + ++ GT R+S + +L +
Sbjct: 226 KSMNVDGIKTGHTSNAGYSLVSSATEGKMRLIAVVMGTKDMNARKSESKKLLSYGFRFFE 285
Query: 59 VIKNWRPEEAAVEQVFVNKDAVA 81
+ + E VE+ +
Sbjct: 286 TVAPHKAGETFVEEKIWMGNKDT 308
>gi|37679087|ref|NP_933696.1| D-alanyl-D-alanine carboxypeptidase [Vibrio vulnificus YJ016]
gi|37197829|dbj|BAC93667.1| D-alanyl-D-alanine carboxypeptidase [Vibrio vulnificus YJ016]
Length = 393
Score = 36.0 bits (82), Expect = 1.7, Method: Composition-based stats.
Identities = 15/83 (18%), Positives = 30/83 (36%), Gaps = 4/83 (4%)
Query: 3 KSIRIIGIDPG-LRRTGWGIVD-VAGDNLCFVS--SGTIVSCVRQSLAFRLCQLYEGLTD 58
KS+ + GI G G+ +V + ++ GT R+S + +L +
Sbjct: 226 KSMNVDGIKTGHTSNAGYSLVSSATEGKMRLIAVVMGTKDMNARKSESKKLLSYGFRFFE 285
Query: 59 VIKNWRPEEAAVEQVFVNKDAVA 81
+ + E VE+ +
Sbjct: 286 TVAPHKAGETFVEEKIWMGNKDT 308
>gi|332712311|ref|ZP_08432239.1| putative endonuclease involved in recombination [Lyngbya
majuscula 3L]
gi|332349117|gb|EGJ28729.1| putative endonuclease involved in recombination [Lyngbya
majuscula 3L]
Length = 133
Score = 36.0 bits (82), Expect = 1.7, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCF--VSSG 35
I+G DPG + G +++ G L V+SG
Sbjct: 2 ILGFDPGRDKCGVAVMEKDGQLLTHEVVASG 32
>gi|291279040|ref|YP_003495875.1| transcription accessory protein [Deferribacter desulfuricans SSM1]
gi|290753742|dbj|BAI80119.1| transcription accessory protein [Deferribacter desulfuricans SSM1]
Length = 707
Score = 36.0 bits (82), Expect = 1.7, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 6/34 (17%)
Query: 6 RIIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTI 37
RI+GIDP R TG + VD G +S G I
Sbjct: 312 RIMGIDPAFR-TGCKYACVDETG---KLLSYGVI 341
>gi|126466187|ref|YP_001041296.1| hypothetical protein Smar_1297 [Staphylothermus marinus F1]
gi|126015010|gb|ABN70388.1| Protein of unknown function DUF460 [Staphylothermus marinus F1]
Length = 678
Score = 36.0 bits (82), Expect = 1.7, Method: Composition-based stats.
Identities = 11/20 (55%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Query: 7 IIGIDPGLRRTGWGIVDVAG 26
IIGIDPG+ TG ++D+ G
Sbjct: 258 IIGIDPGI-STGIAVIDLEG 276
>gi|149376223|ref|ZP_01893987.1| Transcriptional accessory protein [Marinobacter algicola DG893]
gi|149359420|gb|EDM47880.1| Transcriptional accessory protein [Marinobacter algicola DG893]
Length = 776
Score = 36.0 bits (82), Expect = 1.8, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 13/67 (19%)
Query: 8 IGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLC--QLYEGLTDVIKNW 63
+G+DPGLR TG I+D G V G I A R Q E L + + +
Sbjct: 328 LGLDPGLR-TGVKVAIIDGTGQ---VVGHGGI-----FPHAPRNQWDQSIEQLANWCRQY 378
Query: 64 RPEEAAV 70
R E A+
Sbjct: 379 RIELVAI 385
>gi|260172111|ref|ZP_05758523.1| hypothetical protein BacD2_09633 [Bacteroides sp. D2]
gi|315920422|ref|ZP_07916662.1| crispr-associated protein [Bacteroides sp. D2]
gi|313694297|gb|EFS31132.1| crispr-associated protein [Bacteroides sp. D2]
Length = 1436
Score = 36.0 bits (82), Expect = 1.8, Method: Composition-based stats.
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDN 28
RI+G+D G GW +VD A +
Sbjct: 3 RILGLDLGTNSIGWALVDEAENK 25
>gi|148264302|ref|YP_001231008.1| RNA-binding S1 domain-containing protein [Geobacter uraniireducens
Rf4]
gi|146397802|gb|ABQ26435.1| RNA binding S1 domain protein [Geobacter uraniireducens Rf4]
Length = 757
Score = 36.0 bits (82), Expect = 1.8, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
Query: 6 RIIGIDPGLRRTG--WGIVDVAGDNLCF 31
R++GIDPGLR TG VD G L
Sbjct: 325 RVLGIDPGLR-TGSKLAAVDETGRFLSH 351
>gi|294782090|ref|ZP_06747416.1| glucokinase [Fusobacterium sp. 1_1_41FAA]
gi|294480731|gb|EFG28506.1| glucokinase [Fusobacterium sp. 1_1_41FAA]
Length = 315
Score = 36.0 bits (82), Expect = 1.8, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 8 IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYE 54
IGID G T G+VD+ G+ + S I + +Q + L +++E
Sbjct: 5 IGIDLGGTNTKIGVVDLEGN---LIISKIIKTHSKQKVDKTLERIWE 48
>gi|269215120|ref|ZP_06159049.1| CRISPR-associated protein, Csn1 family [Neisseria lactamica ATCC
23970]
gi|269208233|gb|EEZ74688.1| CRISPR-associated protein, Csn1 family [Neisseria lactamica ATCC
23970]
Length = 666
Score = 36.0 bits (82), Expect = 1.9, Method: Composition-based stats.
Identities = 9/32 (28%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 7 IIGIDPGLRRTGWGIVDVA--GDNLCFVSSGT 36
I+G+D G+ GW +V+V + + + G
Sbjct: 12 ILGLDIGIASVGWAMVEVDEEENPIRLIDLGV 43
>gi|332533241|ref|ZP_08409108.1| transcription accessory protein [Pseudoalteromonas haloplanktis
ANT/505]
gi|332037320|gb|EGI73775.1| transcription accessory protein [Pseudoalteromonas haloplanktis
ANT/505]
Length = 797
Score = 36.0 bits (82), Expect = 1.9, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 6/55 (10%)
Query: 8 IGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
+G+DPGLR TG +VD G +++ TI Q+ + + E L
Sbjct: 326 LGLDPGLR-TGCKIAVVDSTG---KLLATQTIFPHAPQNHWDKSVRTLEQLCRQH 376
>gi|330718559|ref|ZP_08313159.1| transcriptional accessory protein [Leuconostoc fallax KCTC 3537]
Length = 727
Score = 36.0 bits (82), Expect = 1.9, Method: Composition-based stats.
Identities = 22/130 (16%), Positives = 44/130 (33%), Gaps = 20/130 (15%)
Query: 1 MRKSIR---IIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEG 55
M++ ++ ++G DPG R TG I+D G F+ S I + R +
Sbjct: 324 MQRPLKNKIVMGFDPGYR-TGSKLAIIDENG---KFLCSQVIYPHKPANKQQR-QEAVTL 378
Query: 56 LTDVIKNWRPEEAAV----------EQVFVNKDAVATLKLGQARAIAILSPALARIPVSE 105
+I + + A+ E V ++K + ++ S +
Sbjct: 379 FQQLITQYGVQLVAIGNGTASRESEEFVAMHKPDHVQYAIVNEAGASVYSASKEAREEFP 438
Query: 106 YAPNTIKKAV 115
+ A+
Sbjct: 439 NLHVEERSAI 448
>gi|196006616|ref|XP_002113174.1| hypothetical protein TRIADDRAFT_57059 [Trichoplax adhaerens]
gi|190583578|gb|EDV23648.1| hypothetical protein TRIADDRAFT_57059 [Trichoplax adhaerens]
Length = 796
Score = 36.0 bits (82), Expect = 2.0, Method: Composition-based stats.
Identities = 16/119 (13%), Positives = 40/119 (33%), Gaps = 7/119 (5%)
Query: 7 IIGIDPGL-RRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG I+D L ++ + + + R+ + L ++++ ++
Sbjct: 344 ILGIDPGYKNGCKLAIID----KLGVITGEVLHATIIYIHDARISEAEATLVNLVQGFKC 399
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAP--NTIKKAVIGVGHGD 122
A+ +D L +R + + ++ +G +
Sbjct: 400 SLIAIGNGCACRDVETLLSNLTSRRAFNFQKVKYCKMSFSFVNESGSSWYSISELGRAE 458
>gi|189490380|ref|YP_001956948.1| hypothetical protein 201phi2-1p225 [Pseudomonas phage 201phi2-1]
gi|164609445|gb|ABY63054.1| hypothetical protein 201phi2-1p225 [Pseudomonas phage 201phi2-1]
Length = 187
Score = 36.0 bits (82), Expect = 2.0, Method: Composition-based stats.
Identities = 31/176 (17%), Positives = 58/176 (32%), Gaps = 30/176 (17%)
Query: 6 RIIGIDPGLRRTGWGIVD--VAGDNLCFVSSGTIVSCV-----------RQSLAFRLCQL 52
RI G DPG G ++ + G N T + RL +
Sbjct: 12 RIAGFDPG-ANLGLTYLEDALDGSNPIVRRVETEKLNPAEYGYKEIAEVHGNRVVRLMIM 70
Query: 53 YEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYA----- 107
Y+ +T ++ +P VE ++ + A A L + + + ++ +
Sbjct: 71 YDRVTQFLREVKPHGVVVEGNYLGRFANAFGSLVECVQVIRSAVYAYDPFMTLHLVDPTT 130
Query: 108 --PNTIKKAVIGVGHGDKKQIHMMLKMLMPES------FFKGKDAADALAIAVCHA 155
N + G DK+ + L L + + D++AIA +A
Sbjct: 131 VKTNIGMVKIRGT---DKEDVRKALSNLKSLDWDGINIDDLDEHSIDSVAIAYYYA 183
>gi|319400876|gb|EFV89095.1| glycine cleavage system T protein [Staphylococcus epidermidis
FRI909]
Length = 363
Score = 36.0 bits (82), Expect = 2.0, Method: Composition-based stats.
Identities = 16/67 (23%), Positives = 29/67 (43%)
Query: 13 GLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQ 72
G+ RTG+ ++D + + FV+SGT +S+A + + + VE
Sbjct: 294 GIARTGYEVLDENSNQIGFVTSGTQSPSSGKSIALAIIDRGAFEMGKKVIVQIRKRQVEA 353
Query: 73 VFVNKDA 79
V K+
Sbjct: 354 KIVKKNQ 360
>gi|296274213|ref|YP_003656844.1| Tex-like protein [Arcobacter nitrofigilis DSM 7299]
gi|296098387|gb|ADG94337.1| Tex-like protein [Arcobacter nitrofigilis DSM 7299]
Length = 702
Score = 36.0 bits (82), Expect = 2.0, Method: Composition-based stats.
Identities = 22/101 (21%), Positives = 36/101 (35%), Gaps = 18/101 (17%)
Query: 7 IIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIV-SCVRQSLAFRLCQLYEGLTDVIKNW 63
I+GIDPG R TG ++ G F+ S I + ++ A + L +IK
Sbjct: 317 ILGIDPGFR-TGCKVAVISDDG---LFLDSAVIYPTKPKEDFAN----SAKTLLALIKKH 368
Query: 64 RPEEAAV-------EQVFVNKDAVATLKLGQARAIAILSPA 97
+ A+ E + + L A+ A
Sbjct: 369 KVNSIAIGNGTASNETASFVSNFIKENSLDVKFAVVSEIGA 409
>gi|242242809|ref|ZP_04797254.1| glycine cleavage system aminomethyltransferase T [Staphylococcus
epidermidis W23144]
gi|242233710|gb|EES36022.1| glycine cleavage system aminomethyltransferase T [Staphylococcus
epidermidis W23144]
Length = 363
Score = 36.0 bits (82), Expect = 2.0, Method: Composition-based stats.
Identities = 16/67 (23%), Positives = 29/67 (43%)
Query: 13 GLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQ 72
G+ RTG+ ++D + + FV+SGT +S+A + + + VE
Sbjct: 294 GIARTGYEVLDENSNQIGFVTSGTQSPSSGKSIALAIIDRGAFEMGKKVIVQIRKRQVEA 353
Query: 73 VFVNKDA 79
V K+
Sbjct: 354 KIVKKNQ 360
>gi|322434828|ref|YP_004217040.1| Tex-like protein protein [Acidobacterium sp. MP5ACTX9]
gi|321162555|gb|ADW68260.1| Tex-like protein protein [Acidobacterium sp. MP5ACTX9]
Length = 765
Score = 35.6 bits (81), Expect = 2.1, Method: Composition-based stats.
Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 11/66 (16%)
Query: 7 IIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
++G+DPGLR TG +VD G F++ I + + + + ++K
Sbjct: 326 VLGLDPGLR-TGCKVAVVDETG---KFLAHDVIY-----PHTGQTAKSNQVMAGLVKAHN 376
Query: 65 PEEAAV 70
A+
Sbjct: 377 VRAIAI 382
>gi|315128002|ref|YP_004070005.1| hypothetical protein PSM_A2941 [Pseudoalteromonas sp. SM9913]
gi|315016516|gb|ADT69854.1| hypothetical protein PSM_A2941 [Pseudoalteromonas sp. SM9913]
Length = 774
Score = 35.6 bits (81), Expect = 2.1, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 6/55 (10%)
Query: 8 IGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
+G+DPGLR TG +VD G +++ TI Q+ + + E L
Sbjct: 326 LGLDPGLR-TGCKIAVVDSTG---KLLATQTIFPHAPQNHWDKSLRTLEQLCRQH 376
>gi|33240546|ref|NP_875488.1| ABC-type multidrug transport system ATPase and permease components
[Prochlorococcus marinus subsp. marinus str. CCMP1375]
gi|33238074|gb|AAQ00141.1| ABC-type multidrug transport system ATPase and permease components
[Prochlorococcus marinus subsp. marinus str. CCMP1375]
Length = 593
Score = 35.6 bits (81), Expect = 2.1, Method: Composition-based stats.
Identities = 23/147 (15%), Positives = 41/147 (27%), Gaps = 19/147 (12%)
Query: 13 GLRRTGWGIVDVAGD----------NLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
G GIV G L + SG I + L L + V +
Sbjct: 380 GTTV---GIVGSTGSGKSSLVKLILRLYPIKSGEIKLDGIGIDKYNLLDLRRSIALVSQE 436
Query: 63 WRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAP--NTIKKAVIGVGH 120
+E+ + A+ K AI + Y + + G
Sbjct: 437 VYLFHGTIEENISYGNNSASQKQIHEAAILSEAADFIEKLPEGYQTLVGERGQKLSG--- 493
Query: 121 GDKKQIHMMLKMLMPESFFKGKDAADA 147
+ Q + + ++ ++ D A A
Sbjct: 494 -GQCQRIALARAILKDAPILILDEATA 519
>gi|327398201|ref|YP_004339070.1| Holliday junction resolvase [Hippea maritima DSM 10411]
gi|327180830|gb|AEA33011.1| Holliday junction resolvase [Hippea maritima DSM 10411]
Length = 136
Score = 35.6 bits (81), Expect = 2.2, Method: Composition-based stats.
Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVR 42
+RI+GID G ++ G I N + G I +
Sbjct: 1 MRILGIDYGTKKIGIAI--SDETNTIALPHGVIDTDGE 36
>gi|298369677|ref|ZP_06980994.1| CRISPR-associated protein, Csn1 family [Neisseria sp. oral taxon
014 str. F0314]
gi|298282234|gb|EFI23722.1| CRISPR-associated protein, Csn1 family [Neisseria sp. oral taxon
014 str. F0314]
Length = 1089
Score = 35.6 bits (81), Expect = 2.3, Method: Composition-based stats.
Identities = 8/32 (25%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 7 IIGIDPGLRRTGWGIVDVAG--DNLCFVSSGT 36
I+G+D G+ GW +V++ + + + G
Sbjct: 12 ILGLDIGIASVGWAMVEIDDKENPVRLIDLGV 43
>gi|323483777|ref|ZP_08089157.1| hypothetical protein HMPREF9474_00906 [Clostridium symbiosum
WAL-14163]
gi|323692750|ref|ZP_08106978.1| hypothetical protein HMPREF9475_01841 [Clostridium symbiosum
WAL-14673]
gi|323402968|gb|EGA95286.1| hypothetical protein HMPREF9474_00906 [Clostridium symbiosum
WAL-14163]
gi|323503192|gb|EGB19026.1| hypothetical protein HMPREF9475_01841 [Clostridium symbiosum
WAL-14673]
Length = 163
Score = 35.6 bits (81), Expect = 2.3, Method: Composition-based stats.
Identities = 16/81 (19%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
Query: 2 RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
++ +R++G+D G + TG + D G F + G + + R+ +L + + ++I+
Sbjct: 12 KQLMRVLGLDFGSKTTGVAVSDPLG----FTAQG-LETITRED-ENKLRRTCARIEELIR 65
Query: 62 NWRPEEAAVEQVFVNKDAVAT 82
++ E + K+ T
Sbjct: 66 EYQIETIVL---GYPKNMNNT 83
>gi|297616549|ref|YP_003701708.1| Holliday junction resolvase YqgF [Syntrophothermus lipocalidus
DSM 12680]
gi|297144386|gb|ADI01143.1| Holliday junction resolvase YqgF [Syntrophothermus lipocalidus
DSM 12680]
Length = 144
Score = 35.6 bits (81), Expect = 2.3, Method: Composition-based stats.
Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 9/66 (13%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+G+DPG +R G I D G ++S I L E + + + ++
Sbjct: 1 MRILGLDPGEKRIGVAISDALGITAQPLTS--IQRSS-------LKADIEAIRQICETYQ 51
Query: 65 PEEAAV 70
E +
Sbjct: 52 VEHIVL 57
>gi|330832269|ref|YP_004401094.1| phage protein [Streptococcus suis ST3]
gi|329306492|gb|AEB80908.1| phage protein [Streptococcus suis ST3]
Length = 154
Score = 35.6 bits (81), Expect = 2.4, Method: Composition-based stats.
Identities = 15/99 (15%), Positives = 33/99 (33%), Gaps = 7/99 (7%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+ IDP R ++ + + + + +VS R +V ++
Sbjct: 1 MRILAIDPSSNR-----IETSTTGIVLLDNAGLVSYWVVPFGAR--NFSRWFREVGRDLE 53
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPV 103
+ VE+ V + + A+ + V
Sbjct: 54 YDVVIVEEYQVRDNDYSRDNSVAETVEAVQACFPNVELV 92
>gi|218282450|ref|ZP_03488711.1| hypothetical protein EUBIFOR_01293 [Eubacterium biforme DSM 3989]
gi|218216595|gb|EEC90133.1| hypothetical protein EUBIFOR_01293 [Eubacterium biforme DSM 3989]
Length = 579
Score = 35.6 bits (81), Expect = 2.4, Method: Composition-based stats.
Identities = 22/160 (13%), Positives = 49/160 (30%), Gaps = 16/160 (10%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFV-SSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+ I+G+D G + +V G + + G V+ S+ + L
Sbjct: 1 MTILGVDLGTTNS-LAVVYKEGKPIRIPNAYGEFVTPSAVSILDG-KIVVGKLAKERLIT 58
Query: 64 RPEEAAVEQVFVNKDAVATLKL---------GQARAIAILSPALARIPVSEYAPNTIKKA 114
PE +A ++ + + + + + + +
Sbjct: 59 HPECSA---SLFKRNMGTDVTYKLDKKEYDSAALSSFIVKQLIEDAQNYLHESIDEVVIS 115
Query: 115 VIGVGHGDKKQIHMMLKMLMPESFFKGKDAADALAIAVCH 154
V + ++Q + L+ + + A AIA CH
Sbjct: 116 VPAYFNARQRQDTKRIGELLGIKVERLINEPSAAAIA-CH 154
>gi|166031235|ref|ZP_02234064.1| hypothetical protein DORFOR_00922 [Dorea formicigenerans ATCC
27755]
gi|166029082|gb|EDR47839.1| hypothetical protein DORFOR_00922 [Dorea formicigenerans ATCC
27755]
Length = 144
Score = 35.6 bits (81), Expect = 2.4, Method: Composition-based stats.
Identities = 12/74 (16%), Positives = 32/74 (43%), Gaps = 6/74 (8%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+G+D G R G + D G +++ + + R+ +L + + +++ +
Sbjct: 1 MRIMGLDYGSRTVGVAVSDPLG-----ITAQAVETICRKD-ENKLRKTCARIEELVAEYE 54
Query: 65 PEEAAVEQVFVNKD 78
E+ + +
Sbjct: 55 VEKIVLGLPKHMNN 68
>gi|325127576|gb|EGC50499.1| hypothetical protein NMXN1568_1685 [Neisseria meningitidis N1568]
Length = 1081
Score = 35.6 bits (81), Expect = 2.5, Method: Composition-based stats.
Identities = 8/32 (25%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 7 IIGIDPGLRRTGWGI--VDVAGDNLCFVSSGT 36
I+G+D G+ GW + +D + + + G
Sbjct: 12 ILGLDIGIASVGWAMVEIDEEENPIRLIDLGV 43
>gi|304388355|ref|ZP_07370468.1| csn1 family CRISPR-associated protein [Neisseria meningitidis
ATCC 13091]
gi|304337672|gb|EFM03828.1| csn1 family CRISPR-associated protein [Neisseria meningitidis
ATCC 13091]
Length = 1082
Score = 35.6 bits (81), Expect = 2.5, Method: Composition-based stats.
Identities = 8/32 (25%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 7 IIGIDPGLRRTGWGI--VDVAGDNLCFVSSGT 36
I+G+D G+ GW + +D + + + G
Sbjct: 12 ILGLDIGIASVGWAMVEIDEEENPIRLIDLGV 43
>gi|261393167|emb|CAX50779.1| conserved hypothetical protein [Neisseria meningitidis 8013]
Length = 1082
Score = 35.6 bits (81), Expect = 2.5, Method: Composition-based stats.
Identities = 8/32 (25%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 7 IIGIDPGLRRTGWGI--VDVAGDNLCFVSSGT 36
I+G+D G+ GW + +D + + + G
Sbjct: 12 ILGLDIGIASVGWAMVEIDEEENPIRLIDLGV 43
>gi|254804356|ref|YP_003082577.1| putative CRISPR-associated protein [Neisseria meningitidis
alpha14]
gi|254667898|emb|CBA04028.1| putative CRISPR-associated protein [Neisseria meningitidis
alpha14]
Length = 1082
Score = 35.6 bits (81), Expect = 2.5, Method: Composition-based stats.
Identities = 8/32 (25%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 7 IIGIDPGLRRTGWGI--VDVAGDNLCFVSSGT 36
I+G+D G+ GW + +D + + + G
Sbjct: 12 ILGLDIGIASVGWAMVEIDEEENPIRLIDLGV 43
>gi|241759613|ref|ZP_04757714.1| CRISPR-associated protein, Csn1 family [Neisseria flavescens
SK114]
gi|241319985|gb|EER56366.1| CRISPR-associated protein, Csn1 family [Neisseria flavescens
SK114]
Length = 1081
Score = 35.6 bits (81), Expect = 2.5, Method: Composition-based stats.
Identities = 8/32 (25%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 7 IIGIDPGLRRTGWGI--VDVAGDNLCFVSSGT 36
I+G+D G+ GW + +D + + + G
Sbjct: 12 ILGLDIGIASVGWAMVEIDEEENPIRLIDLGV 43
>gi|160880429|ref|YP_001559397.1| Holliday junction resolvase YqgF [Clostridium phytofermentans
ISDg]
gi|189046094|sp|A9KKS6|RUVX_CLOPH RecName: Full=Putative Holliday junction resolvase
gi|160429095|gb|ABX42658.1| Holliday junction resolvase YqgF [Clostridium phytofermentans
ISDg]
Length = 150
Score = 35.6 bits (81), Expect = 2.5, Method: Composition-based stats.
Identities = 12/55 (21%), Positives = 19/55 (34%), Gaps = 2/55 (3%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDV 59
+RI+G+D G G I L I L L ++ E + +
Sbjct: 1 MRIMGLDYGSVTVGVAI--SDSLKLTAQGIEVIRRKSETKLRQTLARIEELIKEY 53
>gi|126667875|ref|ZP_01738841.1| hypothetical protein MELB17_08019 [Marinobacter sp. ELB17]
gi|126627691|gb|EAZ98322.1| hypothetical protein MELB17_08019 [Marinobacter sp. ELB17]
Length = 434
Score = 35.6 bits (81), Expect = 2.6, Method: Composition-based stats.
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVS 33
+ + +RI IDPG + TG +V G ++
Sbjct: 36 ITQPVRI-KIDPGSKTTGIAVVRENGQKQHVLA 67
>gi|126666739|ref|ZP_01737716.1| hypothetical protein MELB17_19836 [Marinobacter sp. ELB17]
gi|126628784|gb|EAZ99404.1| hypothetical protein MELB17_19836 [Marinobacter sp. ELB17]
Length = 434
Score = 35.6 bits (81), Expect = 2.6, Method: Composition-based stats.
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVS 33
+ + +RI IDPG + TG +V G ++
Sbjct: 36 ITQPVRI-KIDPGSKTTGIAVVRENGQKQHVLA 67
>gi|240102087|ref|YP_002958395.1| hypothetical protein TGAM_0029 [Thermococcus gammatolerans EJ3]
gi|239909640|gb|ACS32531.1| Conserved hypothetical protein [Thermococcus gammatolerans EJ3]
Length = 668
Score = 35.6 bits (81), Expect = 2.6, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCF 31
I+GIDPG+ G ++D+ G+ L
Sbjct: 246 IVGIDPGITV-GIAVIDLNGNVLAL 269
>gi|288905632|ref|YP_003430854.1| CRISPR-associated protein, Csn1 family [Streptococcus
gallolyticus UCN34]
gi|288732358|emb|CBI13930.1| CRISPR-associated protein, Csn1 family [Streptococcus
gallolyticus UCN34]
Length = 1130
Score = 35.6 bits (81), Expect = 2.6, Method: Composition-based stats.
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCF 31
+I+G+D G+ G GI++ +
Sbjct: 5 KILGLDIGIASVGVGIIEAKTGKVVH 30
>gi|269837236|ref|YP_003319464.1| LAO/AO transport system ATPase [Sphaerobacter thermophilus DSM
20745]
gi|269786499|gb|ACZ38642.1| LAO/AO transport system ATPase [Sphaerobacter thermophilus DSM
20745]
Length = 322
Score = 35.2 bits (80), Expect = 2.7, Method: Composition-based stats.
Identities = 24/145 (16%), Positives = 48/145 (33%), Gaps = 13/145 (8%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSS----GT-IVSCVRQSLAFRLCQLYEGLTDVIK 61
++ IDP TG + GD + + + G I S + L G ++
Sbjct: 77 VLAIDPSSAITGGATL---GDRIRMMENHADEGVYIRSMATRGQMGGLALAATGAIHLLD 133
Query: 62 NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
+ + VE V V +D V + + + I + I ++
Sbjct: 134 AYGFDVILVETVGVGQDEVDIAETADTTLLVQVPGLGDSIQTIKAGIMEIADILVVN-KA 192
Query: 122 DKKQIHMMLK----MLMPESFFKGK 142
D+ +++ ML+ +G
Sbjct: 193 DRPDARQLVRDLRNMLLLGETPEGD 217
>gi|296110337|ref|YP_003620718.1| transcription accessory protein [Leuconostoc kimchii IMSNU 11154]
gi|295831868|gb|ADG39749.1| transcription accessory protein [Leuconostoc kimchii IMSNU 11154]
Length = 731
Score = 35.2 bits (80), Expect = 2.8, Method: Composition-based stats.
Identities = 26/133 (19%), Positives = 47/133 (35%), Gaps = 21/133 (15%)
Query: 1 MRKSIR---IIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEG 55
M+ ++ ++G DPG R TG I+D G F+ I +L R E
Sbjct: 321 MQAPLKGQIVMGFDPGFR-TGSKLAIIDENG---KFLKKQVIYPHKPANLQQR-EAAAET 375
Query: 56 LTDVIKNWRPEEAAV---------EQVFVNK--DAVATLKLGQARAIAILSPALARIPVS 104
+++++ + A+ E+ N + V + +A A + AR
Sbjct: 376 FKTLVQDYHVQLVAIGNGTASRESEEFVANNLPNGVHYTIVNEAGASVYSASDEARAEFP 435
Query: 105 EYAPNTIKKAVIG 117
+ IG
Sbjct: 436 DLHVEERSAISIG 448
>gi|70726380|ref|YP_253294.1| glycine cleavage system aminomethyltransferase T [Staphylococcus
haemolyticus JCSC1435]
gi|123660300|sp|Q4L6N7|GCST_STAHJ RecName: Full=Aminomethyltransferase; AltName: Full=Glycine
cleavage system T protein
gi|68447104|dbj|BAE04688.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
Length = 363
Score = 35.2 bits (80), Expect = 2.8, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 27/45 (60%)
Query: 10 IDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYE 54
+D G+ RTG+ ++D+ G+ + V+SGT +S+A + + E
Sbjct: 291 LDKGIARTGYPVLDLDGNEIGEVTSGTQAPSSGKSIAMAIIKRDE 335
>gi|27468140|ref|NP_764777.1| glycine cleavage system aminomethyltransferase T [Staphylococcus
epidermidis ATCC 12228]
gi|57867047|ref|YP_188678.1| glycine cleavage system aminomethyltransferase T [Staphylococcus
epidermidis RP62A]
gi|251810953|ref|ZP_04825426.1| glycine cleavage system aminomethyltransferase T [Staphylococcus
epidermidis BCM-HMP0060]
gi|282876037|ref|ZP_06284904.1| aminomethyltransferase [Staphylococcus epidermidis SK135]
gi|293366502|ref|ZP_06613179.1| aminomethyltransferase [Staphylococcus epidermidis M23864:W2(grey)]
gi|31340123|sp|Q8CSF4|GCST_STAES RecName: Full=Aminomethyltransferase; AltName: Full=Glycine
cleavage system T protein
gi|61213208|sp|Q5HP12|GCST_STAEQ RecName: Full=Aminomethyltransferase; AltName: Full=Glycine
cleavage system T protein
gi|27315686|gb|AAO04821.1|AE016748_55 aminomethyltransferase [Staphylococcus epidermidis ATCC 12228]
gi|57637705|gb|AAW54493.1| glycine cleavage system T protein [Staphylococcus epidermidis
RP62A]
gi|251805463|gb|EES58120.1| glycine cleavage system aminomethyltransferase T [Staphylococcus
epidermidis BCM-HMP0060]
gi|281295062|gb|EFA87589.1| aminomethyltransferase [Staphylococcus epidermidis SK135]
gi|291319271|gb|EFE59640.1| aminomethyltransferase [Staphylococcus epidermidis M23864:W2(grey)]
gi|329725328|gb|EGG61811.1| aminomethyltransferase [Staphylococcus epidermidis VCU144]
gi|329735347|gb|EGG71639.1| aminomethyltransferase [Staphylococcus epidermidis VCU045]
gi|329737286|gb|EGG73540.1| aminomethyltransferase [Staphylococcus epidermidis VCU028]
Length = 363
Score = 35.2 bits (80), Expect = 2.8, Method: Composition-based stats.
Identities = 16/67 (23%), Positives = 29/67 (43%)
Query: 13 GLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQ 72
G+ RTG+ ++D + + FV+SGT +S+A + + + VE
Sbjct: 294 GIARTGYDVLDENSNEIGFVTSGTQSPSSGKSIALAIIDRDAFEMGKKVIVQIRKRQVEA 353
Query: 73 VFVNKDA 79
V K+
Sbjct: 354 KIVKKNQ 360
>gi|138893888|ref|YP_001124341.1| glycoprotein endopeptidase [Geobacillus thermodenitrificans NG80-2]
gi|134265401|gb|ABO65596.1| Glycoprotein endopeptidase [Geobacillus thermodenitrificans NG80-2]
Length = 246
Score = 35.2 bits (80), Expect = 2.8, Method: Composition-based stats.
Identities = 23/116 (19%), Positives = 43/116 (37%), Gaps = 12/116 (10%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
++I+GID GI + G+ + G I++ V++ + R E L
Sbjct: 1 MKILGID--TSNMPLGIALMDGNVIK----GEIITNVKKDHSARAMPAIESLLRQCGI-T 53
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGH 120
P+E + + V K + + IA IP++ + + A G
Sbjct: 54 PDELDL--IVVAKGPGSYTGVRIGVTIAKTLAWSLGIPIAGVSSLEVLAA---NGR 104
>gi|316972430|gb|EFV56108.1| putative integrin alpha pat-2 [Trichinella spiralis]
Length = 1101
Score = 35.2 bits (80), Expect = 2.9, Method: Composition-based stats.
Identities = 18/89 (20%), Positives = 31/89 (34%), Gaps = 3/89 (3%)
Query: 10 IDPGLRRTGWGI---VDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
IDP LR GW + VD+ ++ V G S R G ++ W+
Sbjct: 390 IDPSLRTFGWSVTGGVDIDNNDYPDVLVGAYSSDRSVLFRTRPVVSVSGFVKILLIWKIS 449
Query: 67 EAAVEQVFVNKDAVATLKLGQARAIAILS 95
+ + D + L + I+ +
Sbjct: 450 FVGFFEQKMLHDFRIIVSLDPKKGISSRA 478
>gi|238754100|ref|ZP_04615458.1| hypothetical protein yruck0001_27010 [Yersinia ruckeri ATCC 29473]
gi|238707596|gb|EEP99955.1| hypothetical protein yruck0001_27010 [Yersinia ruckeri ATCC 29473]
Length = 782
Score = 35.2 bits (80), Expect = 3.0, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 9/45 (20%)
Query: 1 MRKSIRIIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQ 43
MR ++ G+DPGLR TG +VD G V+ T+ Q
Sbjct: 325 MRATM---GLDPGLR-TGVKVAVVDSTG---KLVAYDTVYPHTGQ 362
>gi|239825786|ref|YP_002948410.1| RNA binding S1 domain protein [Geobacillus sp. WCH70]
gi|239806079|gb|ACS23144.1| RNA binding S1 domain protein [Geobacillus sp. WCH70]
Length = 728
Score = 35.2 bits (80), Expect = 3.0, Method: Composition-based stats.
Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 9/67 (13%)
Query: 6 RIIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
++GIDP R TG +VD G L I ++ + E L +I+ +
Sbjct: 321 IVLGIDPAYR-TGCKLAVVDETGKLLK------IDVIYPHPPQQQIEEAREKLIRIIEEY 373
Query: 64 RPEEAAV 70
E A+
Sbjct: 374 HVEMIAI 380
>gi|323139312|ref|ZP_08074365.1| CRISPR-associated protein, Csn1 family [Methylocystis sp. ATCC
49242]
gi|322395460|gb|EFX98008.1| CRISPR-associated protein, Csn1 family [Methylocystis sp. ATCC
49242]
Length = 1080
Score = 35.2 bits (80), Expect = 3.0, Method: Composition-based stats.
Identities = 9/60 (15%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Query: 5 IRIIGIDPGLRRTGWGIVDV----AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
+R++G+D G+ GW ++++ + + +G + + + +L L +
Sbjct: 1 MRVLGLDGGIASIGWALIEIFEDHEPSDGRIIDTGAWMFDAPEEKSQTGTKLKSELRRIF 60
>gi|253699739|ref|YP_003020928.1| butyrate kinase [Geobacter sp. M21]
gi|251774589|gb|ACT17170.1| butyrate kinase [Geobacter sp. M21]
Length = 361
Score = 35.2 bits (80), Expect = 3.2, Method: Composition-based stats.
Identities = 12/72 (16%), Positives = 24/72 (33%), Gaps = 10/72 (13%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+ IDPG T GI ++ G I + + + + +
Sbjct: 1 MRILAIDPGSTSTKIGIYQDG-----HITKGGIEHPRPE-----ISRFASVMDQFEYRMQ 50
Query: 65 PEEAAVEQVFVN 76
+ +E+
Sbjct: 51 VVQQYLEREGFG 62
>gi|168698657|ref|ZP_02730934.1| hypothetical protein GobsU_03989 [Gemmata obscuriglobus UQM 2246]
Length = 499
Score = 35.2 bits (80), Expect = 3.2, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 46/136 (33%), Gaps = 11/136 (8%)
Query: 19 WGIV---DVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFV 75
+ ++ D G +L V I + + +L + V + + P+ VE+ FV
Sbjct: 330 YSVIQVWDCIGGHLVLVH--QIRKRLDGT------KLVPAIASVHRTYNPQFVCVEEQFV 381
Query: 76 NKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMP 135
+ + L+ + A +A D+ + + K L+
Sbjct: 382 GRFVIDQLRAESVPVKRFNAKGHGDKETRAVAAQIRMEAGSVWFPADQDWVSDLQKELLA 441
Query: 136 ESFFKGKDAADALAIA 151
D DAL++A
Sbjct: 442 FPASTHDDQVDALSMA 457
>gi|294625321|ref|ZP_06703958.1| transcription-related protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|292600390|gb|EFF44490.1| transcription-related protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
Length = 439
Score = 35.2 bits (80), Expect = 3.3, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 48/117 (41%), Gaps = 15/117 (12%)
Query: 7 IIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVS-CVRQSLAFRLCQLYEGLTDVIKNW 63
++G+DPG+R TG +VD G V++ TI ++ L + +
Sbjct: 331 VLGLDPGIR-TGCKIAVVDATG---KLVATETIYPHEPKRQWDQSLQT----IKKLCMQH 382
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAIL-SPALARIPVSEYAPNTIKKAVIGVG 119
E A+ +++ G RAIA+ + ++ VSE A I+ G G
Sbjct: 383 NVELIAIGNGTASRENRQA---GPVRAIALCGAANYRKVVVSERAHRCIRPRSRGQG 436
>gi|167756782|ref|ZP_02428909.1| hypothetical protein CLORAM_02331 [Clostridium ramosum DSM 1402]
gi|237734500|ref|ZP_04564981.1| conserved hypothetical protein [Mollicutes bacterium D7]
gi|167702957|gb|EDS17536.1| hypothetical protein CLORAM_02331 [Clostridium ramosum DSM 1402]
gi|229382320|gb|EEO32411.1| conserved hypothetical protein [Coprobacillus sp. D7]
Length = 139
Score = 35.2 bits (80), Expect = 3.3, Method: Composition-based stats.
Identities = 14/56 (25%), Positives = 21/56 (37%), Gaps = 4/56 (7%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61
RI+G+D G R G I D G ++ G R R + L + +
Sbjct: 3 RILGLDLGSRTCGIAISDTLG----MLAHGIETYRFRDDDYDRAAKHVVALINEHQ 54
>gi|254173218|ref|ZP_04879891.1| conserved hypothetical protein [Thermococcus sp. AM4]
gi|214032627|gb|EEB73456.1| conserved hypothetical protein [Thermococcus sp. AM4]
Length = 662
Score = 35.2 bits (80), Expect = 3.3, Method: Composition-based stats.
Identities = 9/25 (36%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCF 31
I+GIDPG+ G ++D++G+ +
Sbjct: 245 IVGIDPGITV-GIAVIDLSGNVIAL 268
>gi|313147649|ref|ZP_07809842.1| ROK family transcriptional repressor [Bacteroides fragilis
3_1_12]
gi|313136416|gb|EFR53776.1| ROK family transcriptional repressor [Bacteroides fragilis
3_1_12]
Length = 322
Score = 35.2 bits (80), Expect = 3.3, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVS 39
++GID G T +GIVD G ++SG + +
Sbjct: 6 VVGIDIGGTNTVFGIVDARG---TIIASGAVKT 35
>gi|260175131|ref|ZP_05761543.1| ROK family transcriptional repressor [Bacteroides sp. D2]
gi|293373456|ref|ZP_06619811.1| ROK family protein [Bacteroides ovatus SD CMC 3f]
gi|299147593|ref|ZP_07040657.1| glucokinase [Bacteroides sp. 3_1_23]
gi|292631594|gb|EFF50217.1| ROK family protein [Bacteroides ovatus SD CMC 3f]
gi|298514380|gb|EFI38265.1| glucokinase [Bacteroides sp. 3_1_23]
Length = 326
Score = 35.2 bits (80), Expect = 3.3, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 6/43 (13%)
Query: 1 MRKSIR---IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSC 40
M ++ ++GID G T +GIVD G ++S +I +
Sbjct: 1 MNSNMEKPYVVGIDIGGTNTVFGIVDARG---TIIASSSIKTS 40
>gi|262067760|ref|ZP_06027372.1| hypothetical protein FUSPEROL_02045 [Fusobacterium periodonticum
ATCC 33693]
gi|291378486|gb|EFE86004.1| hypothetical protein FUSPEROL_02045 [Fusobacterium periodonticum
ATCC 33693]
Length = 257
Score = 35.2 bits (80), Expect = 3.4, Method: Composition-based stats.
Identities = 25/152 (16%), Positives = 45/152 (29%), Gaps = 11/152 (7%)
Query: 3 KSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYE-----GLT 57
K+I ++ ID R G V TI + + + E +
Sbjct: 100 KNINVLSIDLATRSVGIA----YSCKGKIVRWKTIKADLEDFRERGYLIVNEIVNVLETS 155
Query: 58 DVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIG 117
IK + +E V++ ++ L + R + + I + K
Sbjct: 156 KKIKGAAIDLVVIEDVYLGLNSSILSILSEIRGMLTYNLKKLNIGLLLVPAVFWKNKFNN 215
Query: 118 VGHGDKKQIHMMLKML--MPESFFKGKDAADA 147
+ K+Q M+ D ADA
Sbjct: 216 LPLERKEQKEFMMNKFSEFTGKIADSDDVADA 247
>gi|226312529|ref|YP_002772423.1| hypothetical protein BBR47_29420 [Brevibacillus brevis NBRC 100599]
gi|226314937|ref|YP_002774833.1| hypothetical protein BBR47_53520 [Brevibacillus brevis NBRC 100599]
gi|226095477|dbj|BAH43919.1| hypothetical protein [Brevibacillus brevis NBRC 100599]
gi|226097887|dbj|BAH46329.1| hypothetical protein [Brevibacillus brevis NBRC 100599]
Length = 109
Score = 35.2 bits (80), Expect = 3.4, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 118 VGHGDKKQIHMMLKMLMPESFFKGKDAADAL 148
GH D+ +I ++ + S K +DAADA+
Sbjct: 31 WGHEDQDKIQQFIEAIRSNSSLKPEDAADAI 61
>gi|319957206|ref|YP_004168469.1| CRISPR-associated protein, csn1 family [Nitratifractor salsuginis
DSM 16511]
gi|319419610|gb|ADV46720.1| CRISPR-associated protein, Csn1 family [Nitratifractor salsuginis
DSM 16511]
Length = 1132
Score = 35.2 bits (80), Expect = 3.5, Method: Composition-based stats.
Identities = 10/38 (26%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNL-CFVSSGTI 37
M+K I+G+D G+ G+ I+ G +L + + +
Sbjct: 1 MKK---ILGVDLGITSFGYAILQETGKDLYRCLDNSVV 35
>gi|196251110|ref|ZP_03149790.1| peptidase M22 glycoprotease [Geobacillus sp. G11MC16]
gi|196209404|gb|EDY04183.1| peptidase M22 glycoprotease [Geobacillus sp. G11MC16]
Length = 246
Score = 35.2 bits (80), Expect = 3.5, Method: Composition-based stats.
Identities = 22/110 (20%), Positives = 42/110 (38%), Gaps = 9/110 (8%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
++I+GID GI + G+ + G I++ V++ + R E L
Sbjct: 1 MKILGID--TSNMPLGIALMDGNVIK----GEIITNVKKDHSARAMPAIESLLRQCGI-T 53
Query: 65 PEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKA 114
P+E + + V K + + IA IP++ + + A
Sbjct: 54 PDELDL--IVVAKGPGSYTGVRIGVTIAKTLAWSLGIPIAGVSSLEVLAA 101
>gi|294645772|ref|ZP_06723457.1| ROK family protein [Bacteroides ovatus SD CC 2a]
gi|294810312|ref|ZP_06768974.1| ROK family protein [Bacteroides xylanisolvens SD CC 1b]
gi|298482283|ref|ZP_07000470.1| glucokinase [Bacteroides sp. D22]
gi|292638903|gb|EFF57236.1| ROK family protein [Bacteroides ovatus SD CC 2a]
gi|294442511|gb|EFG11316.1| ROK family protein [Bacteroides xylanisolvens SD CC 1b]
gi|295085311|emb|CBK66834.1| glucokinase [Bacteroides xylanisolvens XB1A]
gi|298271570|gb|EFI13144.1| glucokinase [Bacteroides sp. D22]
Length = 326
Score = 34.9 bits (79), Expect = 3.5, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 6/43 (13%)
Query: 1 MRKSIR---IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSC 40
M ++ ++GID G T +GIVD G ++S +I +
Sbjct: 1 MNSNMEKPYVVGIDIGGTNTVFGIVDARG---TIIASSSIKTS 40
>gi|190151432|ref|YP_001974343.1| hypothetical protein phiPH15_gp17 [Streptococcus phage PH15]
gi|190014426|emb|CAQ57812.1| hypothetical protein [Streptococcus phage PH15]
Length = 161
Score = 34.9 bits (79), Expect = 3.7, Method: Composition-based stats.
Identities = 11/77 (14%), Positives = 29/77 (37%), Gaps = 7/77 (9%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+ IDP R ++ + + + + ++++ + + DV
Sbjct: 1 MRIMAIDPASNR-----IETSTTGIVLLDNA--RLIDNWAVSYGVKGFRKWFDDVGSTLD 53
Query: 65 PEEAAVEQVFVNKDAVA 81
P+ VE+ + +
Sbjct: 54 PDVVVVEEYRARDNDKS 70
>gi|315231945|ref|YP_004072381.1| hypothetical protein TERMP_02184 [Thermococcus barophilus MP]
gi|315184973|gb|ADT85158.1| hypothetical protein TERMP_02184 [Thermococcus barophilus MP]
Length = 355
Score = 34.9 bits (79), Expect = 3.7, Method: Composition-based stats.
Identities = 7/27 (25%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCF 31
+R+IG+DPG R + ++ + +
Sbjct: 1 MRVIGVDPGTRS--FDVIGLKDGKIKL 25
>gi|189461817|ref|ZP_03010602.1| hypothetical protein BACCOP_02483 [Bacteroides coprocola DSM
17136]
gi|189431411|gb|EDV00396.1| hypothetical protein BACCOP_02483 [Bacteroides coprocola DSM
17136]
Length = 138
Score = 34.9 bits (79), Expect = 3.8, Method: Composition-based stats.
Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
RI+ ID G +RTG + D L ++SG Q + F L + + + I P
Sbjct: 3 RILAIDYGRKRTGIAV----SDPLQIIASGLTTVPTHQLMDFLLNYIKQEQVECIIIGHP 58
Query: 66 EEAAVEQVFVNKD 78
++ E K+
Sbjct: 59 KQLNNEDSENMKN 71
>gi|303288361|ref|XP_003063469.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226455301|gb|EEH52605.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 459
Score = 34.9 bits (79), Expect = 3.8, Method: Composition-based stats.
Identities = 9/37 (24%), Positives = 14/37 (37%), Gaps = 6/37 (16%)
Query: 120 HGDKKQIHMMLKMLMPESFFKGKDAA------DALAI 150
+ + M+K L+P + AA DA A
Sbjct: 358 RASDEDVAAMVKTLLPLAMRPPLAAAGEVDTPDARAA 394
>gi|37524230|ref|NP_927574.1| hypothetical protein plu0210 [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|36783653|emb|CAE12505.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
TTO1]
Length = 776
Score = 34.9 bits (79), Expect = 3.8, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 9/45 (20%)
Query: 1 MRKSIRIIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQ 43
MR ++ G+DPGLR TG ++D G +++ TI Q
Sbjct: 325 MRATM---GLDPGLR-TGVKVAVIDATG---KLIATDTIYPHTGQ 362
>gi|269926779|ref|YP_003323402.1| LAO/AO transport system ATPase [Thermobaculum terrenum ATCC
BAA-798]
gi|269790439|gb|ACZ42580.1| LAO/AO transport system ATPase [Thermobaculum terrenum ATCC
BAA-798]
Length = 312
Score = 34.9 bits (79), Expect = 3.8, Method: Composition-based stats.
Identities = 24/143 (16%), Positives = 48/143 (33%), Gaps = 12/143 (8%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSS----GT-IVSCVRQSLAFRLCQLYEGLTDVIK 61
++ IDP TG I+ GD + + G I S + L + + V+
Sbjct: 70 VVAIDPSSSITGGAIL---GDRIRMLRMQSDPGVFIRSMATRGNLGGLTKSTRDVVRVLD 126
Query: 62 NWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHG 121
+ +E V V +D V K Q + + + + I ++
Sbjct: 127 ASGKDVVIIETVGVGQDEVDIAKTAQTIVLVNMPGMGDDVQTIKAGILEIADILVIN-KA 185
Query: 122 DK---KQIHMMLKMLMPESFFKG 141
D +++ L+ ++ S
Sbjct: 186 DMPGVEELANNLRQMLSLSKPSP 208
>gi|332558439|ref|ZP_08412761.1| Transcriptional regulator, GntR family protein [Rhodobacter
sphaeroides WS8N]
gi|332276151|gb|EGJ21466.1| Transcriptional regulator, GntR family protein [Rhodobacter
sphaeroides WS8N]
Length = 467
Score = 34.9 bits (79), Expect = 3.9, Method: Composition-based stats.
Identities = 20/101 (19%), Positives = 39/101 (38%), Gaps = 3/101 (2%)
Query: 36 TIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEE-AAVEQVFVNKDAVATLKLGQARAIAIL 94
I S V+ + A RL + GL W+P ++ V + ++ +A + +
Sbjct: 359 EIRSRVQSAFADRLKAIVNGLGSHDLVWQPGLPFVWLRLPVGWRTSSFTRMAEAEGVLLR 418
Query: 95 SPALARIPVSEYAPNTIKKAVIGV-GHGDKKQIHMMLKMLM 134
S + V +PN ++ A+ G + L L+
Sbjct: 419 SADEYAL-VHGRSPNAVRLAIAGQVPRARLEAAVDRLSRLL 458
>gi|167031288|ref|YP_001666519.1| RNA-binding S1 domain-containing protein [Pseudomonas putida GB-1]
gi|166857776|gb|ABY96183.1| RNA binding S1 domain protein [Pseudomonas putida GB-1]
Length = 774
Score = 34.9 bits (79), Expect = 3.9, Method: Composition-based stats.
Identities = 14/55 (25%), Positives = 21/55 (38%), Gaps = 6/55 (10%)
Query: 8 IGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
+G DPGLR TG +VD G + T+ ++ R + L
Sbjct: 326 LGFDPGLR-TGCKIAVVDATG---KLLDYTTVYPHAPKNDWDRTLSVMAALCAKH 376
>gi|325272397|ref|ZP_08138792.1| RNA-binding S1 domain-containing protein [Pseudomonas sp. TJI-51]
gi|324102474|gb|EGB99925.1| RNA-binding S1 domain-containing protein [Pseudomonas sp. TJI-51]
Length = 774
Score = 34.9 bits (79), Expect = 4.0, Method: Composition-based stats.
Identities = 14/55 (25%), Positives = 21/55 (38%), Gaps = 6/55 (10%)
Query: 8 IGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
+G DPGLR TG +VD G + T+ ++ R + L
Sbjct: 326 LGFDPGLR-TGCKIAVVDATG---KLLDHTTVYPHAPKNDWDRTIAIMAALCAKH 376
>gi|298246428|ref|ZP_06970234.1| HNH endonuclease [Ktedonobacter racemifer DSM 44963]
gi|297553909|gb|EFH87774.1| HNH endonuclease [Ktedonobacter racemifer DSM 44963]
Length = 429
Score = 34.9 bits (79), Expect = 4.0, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 10 IDPGLRRTGWGIVDVAGDNLCF 31
+DPG R TG +VD A + F
Sbjct: 59 LDPGSRTTGIAVVDDANGKIVF 80
>gi|126462415|ref|YP_001043529.1| GntR family transcriptional regulator [Rhodobacter sphaeroides ATCC
17029]
gi|221639424|ref|YP_002525686.1| GntR family transcriptional regulator [Rhodobacter sphaeroides
KD131]
gi|126104079|gb|ABN76757.1| transcriptional regulator, GntR family [Rhodobacter sphaeroides
ATCC 17029]
gi|221160205|gb|ACM01185.1| Transcriptional regulator, GntR family [Rhodobacter sphaeroides
KD131]
Length = 467
Score = 34.9 bits (79), Expect = 4.0, Method: Composition-based stats.
Identities = 20/101 (19%), Positives = 38/101 (37%), Gaps = 3/101 (2%)
Query: 36 TIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEE-AAVEQVFVNKDAVATLKLGQARAIAIL 94
I S V+ + A RL + GL W+P ++ V + + +A + +
Sbjct: 359 EIRSRVQSAFADRLKAIVNGLGAHDLVWQPGLPFVWLRLPVGWRTSSFTRTAEAEGVLLR 418
Query: 95 SPALARIPVSEYAPNTIKKAVIGV-GHGDKKQIHMMLKMLM 134
S + V +PN ++ A+ G + L L+
Sbjct: 419 SADEYAL-VHGRSPNAVRLAIAGQVPRARLEAAVDRLSRLL 458
>gi|297543768|ref|YP_003676070.1| hypothetical protein Tmath_0277 [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
gi|296841543|gb|ADH60059.1| protein of unknown function UPF0075 [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
Length = 402
Score = 34.9 bits (79), Expect = 4.1, Method: Composition-based stats.
Identities = 28/169 (16%), Positives = 49/169 (28%), Gaps = 30/169 (17%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTD----VIKN 62
+I D G ++D + G + LA R E L +
Sbjct: 211 VIAFDTGPGNM---VIDEVVKRITH---GEMKFDKDGELASRGKVNEEFLAELLKDEFFE 264
Query: 63 WRPEEAAVEQVFVNKDAVATLK-------------LGQARAIAILSPALARIPVSEYAPN 109
+P + + K+ V L + A+ S +
Sbjct: 265 IKPPKTTGRE-HFGKNYVDNLMKRASYLEINKYDLVATVTALTAYSVVRSYERFIFPYYK 323
Query: 110 TIKKAVIGVGHGDKKQIHMMLKMLMPESFFKGKDA---AD---ALAIAV 152
K + G G +K + M+ K L +D +D A+A A+
Sbjct: 324 VDKVVIGGGGSFNKTLVQMIKKQLPQVRVITQEDIGFNSDAKEAVAFAI 372
>gi|77463583|ref|YP_353087.1| GntR family transcriptional regulator [Rhodobacter sphaeroides
2.4.1]
gi|77388001|gb|ABA79186.1| transcriptional regulator, GntR family [Rhodobacter sphaeroides
2.4.1]
Length = 467
Score = 34.9 bits (79), Expect = 4.2, Method: Composition-based stats.
Identities = 20/101 (19%), Positives = 38/101 (37%), Gaps = 3/101 (2%)
Query: 36 TIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEE-AAVEQVFVNKDAVATLKLGQARAIAIL 94
I S V+ + A RL + GL W+P ++ V + + +A + +
Sbjct: 359 EIRSRVQSAFADRLKAIVNGLGAHDLVWQPGLPFVWLRLPVGWRTSSFTRTAEAEGVLLR 418
Query: 95 SPALARIPVSEYAPNTIKKAVIGV-GHGDKKQIHMMLKMLM 134
S + V +PN ++ A+ G + L L+
Sbjct: 419 SADEYAL-VHGRSPNAVRLAIAGQVPRARLEAAVDRLSRLL 458
>gi|301059600|ref|ZP_07200512.1| conserved hypothetical protein [delta proteobacterium NaphS2]
gi|300446365|gb|EFK10218.1| conserved hypothetical protein [delta proteobacterium NaphS2]
Length = 153
Score = 34.9 bits (79), Expect = 4.3, Method: Composition-based stats.
Identities = 27/148 (18%), Positives = 43/148 (29%), Gaps = 14/148 (9%)
Query: 8 IGIDPGLRRTGWGIVDVAGDNLCFVSS-GTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
IGIDPG +TG + + G V + ++L + + RP
Sbjct: 7 IGIDPG--KTGAAALITDEGTHEILDYPGDPSLIVAKFTEWKLHHHIVMVALEKVSARPG 64
Query: 67 EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
+ V ++ + A I + P + G
Sbjct: 65 QGVVSMFSFGRNLGTWEGIISAFGIPFMMPTPRQWQQGLIDQKAG-----GDPKARSLNT 119
Query: 127 HMMLKMLMP---ESFFKGKDAADALAIA 151
+ L P S K ADAL +A
Sbjct: 120 A---RRLFPDAELSRKKDHGRADALLMA 144
>gi|291276265|ref|YP_003516037.1| CRISPR associated protein [Helicobacter mustelae 12198]
gi|290963459|emb|CBG39289.1| Putative CRISPR associated protein [Helicobacter mustelae 12198]
Length = 1024
Score = 34.9 bits (79), Expect = 4.3, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 5/50 (10%)
Query: 4 SIRIIGIDPGLRRTGWGIVDVAGD-----NLCFVSSGTIVSCVRQSLAFR 48
IR +GID G+ GW +++ N V+SG V ++ +
Sbjct: 1 MIRTLGIDIGIASIGWAVIEGEYTDKGLENKEIVASGVRVFTKAENPKNK 50
>gi|317013627|gb|ADU81063.1| phage-related CUP0950-like protein [Helicobacter pylori
Gambia94/24]
Length = 518
Score = 34.9 bits (79), Expect = 4.5, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCH 154
+QI L P+ FK D DALA A+ H
Sbjct: 461 EQIEKELFSFNPDKPFKKDDCIDALASAITH 491
>gi|317009833|gb|ADU80413.1| phage-related CUP0950-like protein [Helicobacter pylori India7]
Length = 518
Score = 34.9 bits (79), Expect = 4.5, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCH 154
+QI L P+ FK D DALA A+ H
Sbjct: 461 EQIEKELFSFNPDKPFKKDDCIDALASAITH 491
>gi|308061499|gb|ADO03387.1| phage-related CUP0950-like protein [Helicobacter pylori Cuz20]
Length = 519
Score = 34.9 bits (79), Expect = 4.5, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAVCH 154
+QI L P+ FK D DALA A+ H
Sbjct: 462 EQIEKELFSFNPDKPFKKDDCIDALASAITH 492
>gi|332970136|gb|EGK09130.1| glycoprotease [Desmospora sp. 8437]
Length = 237
Score = 34.5 bits (78), Expect = 4.7, Method: Composition-based stats.
Identities = 10/46 (21%), Positives = 22/46 (47%), Gaps = 6/46 (13%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLC 50
++I+ ID G +++ G L G + + +R++ + RL
Sbjct: 1 MKILAIDTSTLVLGVAVLE-EGSLL-----GEVTTNLRKNHSVRLM 40
>gi|95931126|ref|ZP_01313851.1| RNA binding S1 [Desulfuromonas acetoxidans DSM 684]
gi|95132816|gb|EAT14490.1| RNA binding S1 [Desulfuromonas acetoxidans DSM 684]
Length = 747
Score = 34.5 bits (78), Expect = 4.7, Method: Composition-based stats.
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 6/56 (10%)
Query: 7 IIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVI 60
++GIDPGLR TG +V G F+ TI +++ + + L +
Sbjct: 350 VLGIDPGLR-TGSKLAVVSATG---AFLDHVTIYPHTQKAQQPQFSRQISALIEKY 401
>gi|284929439|ref|YP_003421961.1| hypothetical protein UCYN_08960 [cyanobacterium UCYN-A]
gi|284809883|gb|ADB95580.1| hypothetical protein UCYN_08960 [cyanobacterium UCYN-A]
Length = 56
Score = 34.5 bits (78), Expect = 4.9, Method: Composition-based stats.
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 2 RKSIRIIGIDPGLRRTGWGIVDVAGD 27
+K + I+G DPG + G ++ G
Sbjct: 4 KKPLFILGFDPGRDKCGIAVISEDGK 29
>gi|197119523|ref|YP_002139950.1| butyrate kinase [Geobacter bemidjiensis Bem]
gi|197088883|gb|ACH40154.1| butyrate kinase [Geobacter bemidjiensis Bem]
Length = 357
Score = 34.5 bits (78), Expect = 5.4, Method: Composition-based stats.
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 5 IRIIGIDPGLRRTGWGI 21
+RI+ IDPG T G+
Sbjct: 1 MRILAIDPGSTSTKIGV 17
>gi|224023748|ref|ZP_03642114.1| hypothetical protein BACCOPRO_00464 [Bacteroides coprophilus DSM
18228]
gi|224016970|gb|EEF74982.1| hypothetical protein BACCOPRO_00464 [Bacteroides coprophilus DSM
18228]
Length = 142
Score = 34.5 bits (78), Expect = 5.5, Method: Composition-based stats.
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
RII ID G +RTG + D + +++G Q + F L + + + I P
Sbjct: 3 RIIAIDYGRKRTGIAVTD----PMQIIANGLTTVPTHQLMDFLLKYVTQESVERIIVGHP 58
Query: 66 EEAAVEQVFVNKD 78
++ E K+
Sbjct: 59 KQMNNEDSENMKN 71
>gi|160940886|ref|ZP_02088226.1| hypothetical protein CLOBOL_05778 [Clostridium bolteae ATCC
BAA-613]
gi|158436130|gb|EDP13897.1| hypothetical protein CLOBOL_05778 [Clostridium bolteae ATCC
BAA-613]
Length = 171
Score = 34.5 bits (78), Expect = 5.5, Method: Composition-based stats.
Identities = 24/149 (16%), Positives = 54/149 (36%), Gaps = 19/149 (12%)
Query: 4 SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
++RI+G+D G + G + D G +++ T+ + R S ++ Q + +I +
Sbjct: 30 NMRIMGLDFGSKTVGVAVCDPLG-----ITAQTVETITRAS-ENKMRQTLARIEQLIGEY 83
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDK 123
E + K+ T+ + + R + + V ++
Sbjct: 84 EIERIVL---GYPKNMNNTVGERGEKTQEFKAALERRTGLEVILWDERLTTVA----AER 136
Query: 124 KQIHMMLKMLMPESFFKGKDAADALAIAV 152
I ++ E+ K D +A A+
Sbjct: 137 VLIESGVRR---ENRKKSVDQ---IAAAM 159
>gi|296241938|ref|YP_003649425.1| hypothetical protein Tagg_0193 [Thermosphaera aggregans DSM 11486]
gi|296094522|gb|ADG90473.1| Protein of unknown function DUF460 [Thermosphaera aggregans DSM
11486]
Length = 643
Score = 34.5 bits (78), Expect = 5.5, Method: Composition-based stats.
Identities = 17/92 (18%), Positives = 34/92 (36%), Gaps = 17/92 (18%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
I+GIDPG+ G ++D+ G + + +R YE ++ + +
Sbjct: 242 IMGIDPGMTV-GVALIDLEGRP--------VFTKS-----WRTIDRYEIISAISSYGKVV 287
Query: 67 EAAVEQVFVNKDAVATLKLGQARAIAILSPAL 98
A + V+ K+G + +P
Sbjct: 288 VIATD---VSNPPELVKKIGSLLGAIVYAPER 316
>gi|317049904|ref|YP_004117552.1| Tex-like protein [Pantoea sp. At-9b]
gi|316951521|gb|ADU70996.1| Tex-like protein [Pantoea sp. At-9b]
Length = 777
Score = 34.5 bits (78), Expect = 5.5, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 9/45 (20%)
Query: 1 MRKSIRIIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQ 43
MR ++ G+DPGLR TG +VD G V++ TI Q
Sbjct: 326 MRSTM---GLDPGLR-TGVKVAVVDATG---KLVATDTIYPHTGQ 363
>gi|188535335|ref|YP_001909132.1| Putative RNA binding protein [Erwinia tasmaniensis Et1/99]
gi|188030377|emb|CAO98268.1| Putative RNA binding protein [Erwinia tasmaniensis Et1/99]
Length = 777
Score = 34.5 bits (78), Expect = 5.6, Method: Composition-based stats.
Identities = 15/72 (20%), Positives = 28/72 (38%), Gaps = 14/72 (19%)
Query: 1 MRKSIRIIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTD 58
MR ++ G+DPGLR TG +VD G + + + + +
Sbjct: 326 MRATM---GLDPGLR-TGVKVAVVDATGK--------VVATDTIYPHTGQAAKAAAAVAA 373
Query: 59 VIKNWRPEEAAV 70
+ ++ E A+
Sbjct: 374 LCTKYQVELVAI 385
>gi|292670676|ref|ZP_06604102.1| YhgF like protein [Selenomonas noxia ATCC 43541]
gi|292647703|gb|EFF65675.1| YhgF like protein [Selenomonas noxia ATCC 43541]
Length = 729
Score = 34.5 bits (78), Expect = 5.7, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 6/39 (15%)
Query: 7 IIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQ 43
++G+DPG R TG +VD G+ ++SG I +
Sbjct: 320 VLGLDPGYR-TGCKMAVVDATGN---VLASGVIQITKSE 354
>gi|258645767|ref|ZP_05733236.1| conserved hypothetical protein [Dialister invisus DSM 15470]
gi|260403138|gb|EEW96685.1| conserved hypothetical protein [Dialister invisus DSM 15470]
Length = 144
Score = 34.5 bits (78), Expect = 5.8, Method: Composition-based stats.
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 7 IIGIDPGLRRTGWGIVDVAGD 27
I+ +DPG +TG +V G
Sbjct: 2 ILALDPGSVKTGVAVVHKDGS 22
>gi|15807398|ref|NP_296129.1| cobW protein [Deinococcus radiodurans R1]
gi|6460223|gb|AAF11951.1|AE002071_5 cobW protein, putative [Deinococcus radiodurans R1]
Length = 320
Score = 34.5 bits (78), Expect = 5.9, Method: Composition-based stats.
Identities = 20/138 (14%), Positives = 45/138 (32%), Gaps = 22/138 (15%)
Query: 9 GIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEA 68
G+D G +++ D++ +++G + R L L ++ ++ +P+
Sbjct: 55 GVD-GS------LIERLDDDVTELAAGCLCCTGRDDLLRALMEI------SMREHKPDAL 101
Query: 69 AVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHM 128
VE V T L ++ + V+ + + + + Q+
Sbjct: 102 IVELSGVA---DPTPVLTTLLERSVRAAFRLTTLVAVVDARHVMQTLQDHPEAAR-QLAY 157
Query: 129 MLKMLMPESFFKGKDAAD 146
DAAD
Sbjct: 158 A-----NLVVINKTDAAD 170
>gi|319409849|emb|CBY90161.1| conserved hypothetical protein [Neisseria meningitidis WUE 2594]
Length = 1082
Score = 34.5 bits (78), Expect = 6.0, Method: Composition-based stats.
Identities = 9/32 (28%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 7 IIGIDPGLRRTGWGI--VDVAGDNLCFVSSGT 36
I+G+D G+ GW + +D + +C + G
Sbjct: 12 ILGLDIGIASVGWAMVEIDEDENPICLIDLGV 43
>gi|161869390|ref|YP_001598557.1| hypothetical protein NMCC_0397 [Neisseria meningitidis 053442]
gi|161594943|gb|ABX72603.1| conserved hypothetical protein [Neisseria meningitidis 053442]
Length = 1082
Score = 34.5 bits (78), Expect = 6.0, Method: Composition-based stats.
Identities = 9/32 (28%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 7 IIGIDPGLRRTGWGI--VDVAGDNLCFVSSGT 36
I+G+D G+ GW + +D + +C + G
Sbjct: 12 ILGLDIGIASVGWAMVEIDEDENPICLIDLGV 43
>gi|218767588|ref|YP_002342100.1| hypothetical protein NMA0631 [Neisseria meningitidis Z2491]
gi|121051596|emb|CAM07896.1| hypothetical protein NMA0631 [Neisseria meningitidis Z2491]
Length = 1082
Score = 34.5 bits (78), Expect = 6.0, Method: Composition-based stats.
Identities = 9/32 (28%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 7 IIGIDPGLRRTGWGI--VDVAGDNLCFVSSGT 36
I+G+D G+ GW + +D + +C + G
Sbjct: 12 ILGLDIGIASVGWAMVEIDEDENPICLIDLGV 43
>gi|160895347|ref|ZP_02076118.1| hypothetical protein CLOL250_02906 [Clostridium sp. L2-50]
gi|156863040|gb|EDO56471.1| hypothetical protein CLOL250_02906 [Clostridium sp. L2-50]
Length = 165
Score = 34.1 bits (77), Expect = 6.1, Method: Composition-based stats.
Identities = 17/82 (20%), Positives = 38/82 (46%), Gaps = 9/82 (10%)
Query: 3 KSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
K++RIIG+D G + G + + +++ + + R+S A +L Q + +I+
Sbjct: 19 KNMRIIGLDYGTKTVGVAV-----SDALMITAQPLETIERKS-ANKLRQTLARIESIIEE 72
Query: 63 WRPEEAAVEQVFVNKDAVATLK 84
++ E + K+ T+
Sbjct: 73 YQAERIVL---GYPKNMNNTIG 91
>gi|317485315|ref|ZP_07944195.1| phage/plasmid primase [Bilophila wadsworthia 3_1_6]
gi|316923441|gb|EFV44647.1| phage/plasmid primase [Bilophila wadsworthia 3_1_6]
Length = 563
Score = 34.1 bits (77), Expect = 6.3, Method: Composition-based stats.
Identities = 21/140 (15%), Positives = 43/140 (30%), Gaps = 12/140 (8%)
Query: 15 RRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVF 74
R G+G++ D++ + G + +L + + L + P E ++
Sbjct: 239 RLLGYGLIRERKDHIFMIFHGEHGRNGKDTL---IKLITTTLGKALSGDVPVEMLLQTPN 295
Query: 75 VNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKA----VIGVGHGDKKQIHMML 130
V + + + + R + I A K + + G K++
Sbjct: 296 VKNSSGPSPDVMRLRGMCIAWINEAEENQKFALAKLKKLSGGSYITGRSPYSKEETSWKQ 355
Query: 131 KML-----MPESFFKGKDAA 145
L K DAA
Sbjct: 356 THLPIMTTNELPKAKADDAA 375
>gi|29347903|ref|NP_811406.1| ROK family transcriptional repressor [Bacteroides
thetaiotaomicron VPI-5482]
gi|253572496|ref|ZP_04849898.1| ROK family transcriptional repressor [Bacteroides sp. 1_1_6]
gi|298387848|ref|ZP_06997398.1| glucokinase [Bacteroides sp. 1_1_14]
gi|29339805|gb|AAO77600.1| ROK family transcriptional repressor, with glucokinase domain
[Bacteroides thetaiotaomicron VPI-5482]
gi|251837911|gb|EES66000.1| ROK family transcriptional repressor [Bacteroides sp. 1_1_6]
gi|298259453|gb|EFI02327.1| glucokinase [Bacteroides sp. 1_1_14]
Length = 326
Score = 34.1 bits (77), Expect = 6.3, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 6/42 (14%)
Query: 1 MRKSIR---IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVS 39
M ++ ++GID G T +GIVD G ++S +I +
Sbjct: 1 MNSNMEKPYVVGIDIGGTNTVFGIVDARG---TIIASSSIKT 39
>gi|86158074|ref|YP_464859.1| LAO/AO transport system ATPase [Anaeromyxobacter dehalogenans
2CP-C]
gi|85774585|gb|ABC81422.1| LAO/AO transport system ATPase [Anaeromyxobacter dehalogenans
2CP-C]
Length = 344
Score = 34.1 bits (77), Expect = 6.4, Method: Composition-based stats.
Identities = 28/161 (17%), Positives = 52/161 (32%), Gaps = 20/161 (12%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCF----VSSGT-IVSCVRQSLAFRLCQLYEG 55
M K++ +I +DP +G I+ GD + + G I S + L +
Sbjct: 73 MGKTVGVIAVDPTSAFSGGAIL---GDRIRMQDHALDEGVFIRSLGTRGHLGGLSRSTSD 129
Query: 56 LTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAV 115
L V+ + VE V V +D + L + + + + I
Sbjct: 130 LVQVMDAMGKDVILVETVGVGQDEIEVATLAHTVVVVAVPGLGDDVQAIKAGVLEIADVF 189
Query: 116 IGVGHGDKK-------QIHMMLK----MLMPESFFKGKDAA 145
D++ + ML+ ++ DAA
Sbjct: 190 AVN-KADREGADRTVRDLQTMLEVRRTVMGLGPAPADHDAA 229
>gi|118431527|ref|NP_148048.2| hypothetical protein APE_1599.1 [Aeropyrum pernix K1]
gi|116062852|dbj|BAA80599.2| conserved hypothetical protein [Aeropyrum pernix K1]
Length = 667
Score = 34.1 bits (77), Expect = 6.9, Method: Composition-based stats.
Identities = 10/21 (47%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Query: 7 IIGIDPGLRRTGWGIVDVAGD 27
I+GIDPG+ TG ++D+ G
Sbjct: 255 IVGIDPGIT-TGLAVLDINGR 274
>gi|308188423|ref|YP_003932554.1| RNA binding protein [Pantoea vagans C9-1]
gi|308058933|gb|ADO11105.1| putative RNA binding protein [Pantoea vagans C9-1]
Length = 775
Score = 34.1 bits (77), Expect = 7.0, Method: Composition-based stats.
Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 14/72 (19%)
Query: 1 MRKSIRIIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTD 58
MR ++ G+DPGLR TG +VD G + + + + +
Sbjct: 325 MRATM---GLDPGLR-TGVKVAVVDATGK--------VVATDTVYPHTGQTAKAAAAVAA 372
Query: 59 VIKNWRPEEAAV 70
+ + E A+
Sbjct: 373 LCIKHQVELVAI 384
>gi|304397826|ref|ZP_07379702.1| Tex-like protein [Pantoea sp. aB]
gi|304354537|gb|EFM18908.1| Tex-like protein [Pantoea sp. aB]
Length = 775
Score = 34.1 bits (77), Expect = 7.4, Method: Composition-based stats.
Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 14/72 (19%)
Query: 1 MRKSIRIIGIDPGLRRTG--WGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTD 58
MR ++ G+DPGLR TG +VD G + + + + +
Sbjct: 325 MRATM---GLDPGLR-TGVKVAVVDATGK--------VVATDTVYPHTGQTAKAAAAVAA 372
Query: 59 VIKNWRPEEAAV 70
+ + E A+
Sbjct: 373 LCIKHQVELVAI 384
>gi|282598962|ref|YP_003358879.1| hypothetical protein [Deftia phage phiW-14]
gi|257219032|gb|ACV50047.1| conserved hypothetical protein [Deftia phage phiW-14]
Length = 183
Score = 34.1 bits (77), Expect = 7.4, Method: Composition-based stats.
Identities = 19/110 (17%), Positives = 32/110 (29%), Gaps = 10/110 (9%)
Query: 47 FRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEY 106
R L + +K E+ +E + + + A+ L A I
Sbjct: 64 ERYTILSDWAMSKLKQHGVEQVYLEGYALGSTTGLVFNIAENTALLKLKMWQAGIKFETP 123
Query: 107 APNTIKKAVIGVGHGDKKQIHMMLKMLMPES----------FFKGKDAAD 146
P+ +KK G G K + + L+ D AD
Sbjct: 124 TPSQVKKFYTGNGAAKKPMMCDRFEALLGVRVSDECGCKRGDAPENDIAD 173
>gi|260221111|emb|CBA29350.1| hypothetical protein Csp_A11700 [Curvibacter putative symbiont of
Hydra magnipapillata]
Length = 1159
Score = 34.1 bits (77), Expect = 7.6, Method: Composition-based stats.
Identities = 5/21 (23%), Positives = 8/21 (38%)
Query: 126 IHMMLKMLMPESFFKGKDAAD 146
+ M+K + DA D
Sbjct: 541 VQAMVKRIFGSDNPPPLDAYD 561
>gi|94310836|ref|YP_584046.1| aldehyde dehydrogenase [Cupriavidus metallidurans CH34]
gi|93354688|gb|ABF08777.1| aldehyde dehydrogenase [Cupriavidus metallidurans CH34]
Length = 471
Score = 33.7 bits (76), Expect = 8.7, Method: Composition-based stats.
Identities = 14/76 (18%), Positives = 30/76 (39%), Gaps = 13/76 (17%)
Query: 76 NKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMP 135
++ L G+ R + + + + +A N ++ A +++I +
Sbjct: 337 QQEGATLLAGGEGRPDGMHAGWFVKPTLFTHANNQMRIA--------REEIFGPV----- 383
Query: 136 ESFFKGKDAADALAIA 151
+ D ADA+AIA
Sbjct: 384 LTIIPYDDEADAIAIA 399
>gi|291563945|emb|CBL42761.1| conserved hypothetical protein TIGR00250 [butyrate-producing
bacterium SS3/4]
Length = 144
Score = 33.7 bits (76), Expect = 9.0, Method: Composition-based stats.
Identities = 11/66 (16%), Positives = 29/66 (43%), Gaps = 6/66 (9%)
Query: 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+RI+G+D G + G + G +++ + + R+ +L + + ++I +
Sbjct: 1 MRILGLDFGSKTVGVAV--SDG---LLLTAQGVETIERKD-ENKLRKTCARIEELIAEYE 54
Query: 65 PEEAAV 70
E +
Sbjct: 55 VTEIVL 60
>gi|154247608|ref|YP_001418566.1| hypothetical protein Xaut_3682 [Xanthobacter autotrophicus Py2]
gi|154161693|gb|ABS68909.1| conserved hypothetical protein [Xanthobacter autotrophicus Py2]
Length = 336
Score = 33.7 bits (76), Expect = 9.2, Method: Composition-based stats.
Identities = 11/64 (17%), Positives = 26/64 (40%), Gaps = 4/64 (6%)
Query: 93 ILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESFF----KGKDAADAL 148
I + E + ++K + G + +K+++ + ++ K A DAL
Sbjct: 83 IDACRKHVRDTLETWRDEVRKPLTGWENAEKERVQAHERAILRLDQLADMGKQNVAVDAL 142
Query: 149 AIAV 152
+A+
Sbjct: 143 QLAL 146
>gi|224542878|ref|ZP_03683417.1| hypothetical protein CATMIT_02072 [Catenibacterium mitsuokai DSM
15897]
gi|224524208|gb|EEF93313.1| hypothetical protein CATMIT_02072 [Catenibacterium mitsuokai DSM
15897]
Length = 140
Score = 33.7 bits (76), Expect = 9.6, Method: Composition-based stats.
Identities = 10/58 (17%), Positives = 21/58 (36%), Gaps = 4/58 (6%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
+I+G+D G R G I D G ++ G ++ + + + +
Sbjct: 3 KILGLDLGSRTCGVAISDTLG----MLAHGVETYHFSENAYKKCAYHIKNIVEENNIH 56
>gi|3360392|gb|AAC27925.1| unknown [Clostridium pasteurianum]
Length = 602
Score = 33.7 bits (76), Expect = 9.6, Method: Composition-based stats.
Identities = 18/103 (17%), Positives = 39/103 (37%), Gaps = 6/103 (5%)
Query: 9 GIDPGLRRTGWGI--VDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
GID G T I ++ G+ + FVSSG + + + + + + L ++
Sbjct: 6 GIDIGNATTEVAIAKIE-DGNKIEFVSSGIVKTTGIKGTKQNIKGVIDSLNQALEKCS-- 62
Query: 67 EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPN 109
+E + + + A +G I + + + P+
Sbjct: 63 -TDIENLGLIRINEAAPVIGDVAMETITETIITESTMIGHNPS 104
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.311 0.152 0.494
Lambda K H
0.267 0.0467 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,591,223,390
Number of Sequences: 14124377
Number of extensions: 65739195
Number of successful extensions: 230487
Number of sequences better than 10.0: 2028
Number of HSP's better than 10.0 without gapping: 1680
Number of HSP's successfully gapped in prelim test: 348
Number of HSP's that attempted gapping in prelim test: 226873
Number of HSP's gapped (non-prelim): 2076
length of query: 169
length of database: 4,842,793,630
effective HSP length: 128
effective length of query: 41
effective length of database: 3,034,873,374
effective search space: 124429808334
effective search space used: 124429808334
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.1 bits)
S2: 76 (33.7 bits)