RPSBLAST alignment for GI: 254780554 and conserved domain: TIGR00228
>gnl|CDD|129331 TIGR00228, ruvC, crossover junction endodeoxyribonuclease RuvC. Endonuclease that resolves Holliday junction intermediates in genetic recombination. The active form of the protein is a dimer. Structure studies reveals that the catalytic center, comprised of four acidic residues, lies at the bottom of a cleft that fits a DNA duplex. The model hits a single Synechocystis PCC6803 protein at a score of 30, below the trusted cutoff, that appears orthologous and may act as authentic RuvC. Length = 156
Score = 130 bits (327), Expect = 3e-31
Identities = 64/150 (42%), Positives = 96/150 (64%), Gaps = 1/150 (0%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
I+GIDPG R TG+G++ G L ++ SG I + V L RL +Y G+T++I ++P
Sbjct: 1 ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKV-DDLPSRLKLIYAGVTEIITQFQPN 59
Query: 67 EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
A+EQVF+ K+A + LKLGQAR +AI++ +PV EYA +K+ V+G+G +K Q+
Sbjct: 60 YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 119
Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAY 156
M++ L+ DAADALAIA+ HA+
Sbjct: 120 QHMVRRLLKLPANPQADAADALAIAITHAH 149