RPSBLAST alignment for GI: 254780554 and conserved domain: TIGR00228

>gnl|CDD|129331 TIGR00228, ruvC, crossover junction endodeoxyribonuclease RuvC. Endonuclease that resolves Holliday junction intermediates in genetic recombination. The active form of the protein is a dimer. Structure studies reveals that the catalytic center, comprised of four acidic residues, lies at the bottom of a cleft that fits a DNA duplex. The model hits a single Synechocystis PCC6803 protein at a score of 30, below the trusted cutoff, that appears orthologous and may act as authentic RuvC. Length = 156
 Score =  130 bits (327), Expect = 3e-31
 Identities = 64/150 (42%), Positives = 96/150 (64%), Gaps = 1/150 (0%)

Query: 7   IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
           I+GIDPG R TG+G++   G  L ++ SG I + V   L  RL  +Y G+T++I  ++P 
Sbjct: 1   ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKV-DDLPSRLKLIYAGVTEIITQFQPN 59

Query: 67  EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
             A+EQVF+ K+A + LKLGQAR +AI++     +PV EYA   +K+ V+G+G  +K Q+
Sbjct: 60  YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 119

Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAY 156
             M++ L+        DAADALAIA+ HA+
Sbjct: 120 QHMVRRLLKLPANPQADAADALAIAITHAH 149