RPSBLAST alignment for GI: 254780554 and conserved domain: cd00529
>gnl|CDD|29627 cd00529, RuvC_resolvase, Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.. Length = 154
Score = 155 bits (393), Expect = 7e-39
Identities = 69/152 (45%), Positives = 98/152 (64%), Gaps = 1/152 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
RI+GIDPG R TG+G+++ G L +++SG I + L RL +Y+GL +VI ++P
Sbjct: 1 RILGIDPGSRNTGYGVIEQEGRKLIYLASGVIRTSSDAPLPSRLKTIYDGLNEVIDQFQP 60
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+E+VF K+ + LKLGQAR IL+ A +PV EY PN +KKAV G G DK Q
Sbjct: 61 DVVAIERVFFAKNPDSALKLGQARGALILALANRNLPVFEYTPNQVKKAVTGYGKADKDQ 120
Query: 126 I-HMMLKMLMPESFFKGKDAADALAIAVCHAY 156
+ HM+ ++L K DAADALA+A+ HA+
Sbjct: 121 VQHMVKRLLNLSEIPKPDDAADALAVAITHAH 152