RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780554|ref|YP_003064967.1| Holliday junction resolvase
[Candidatus Liberibacter asiaticus str. psy62]
(169 letters)
>1hjr_A Holliday junction resolvase (RUVC); site-specific
recombinase; 2.50A {Escherichia coli} (A:)
Length = 158
Score = 171 bits (436), Expect = 3e-44
Identities = 63/155 (40%), Positives = 98/155 (63%), Gaps = 1/155 (0%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
I+GIDPG R TG+G++ G L ++ SG I + V L RL +Y G+T++I ++P
Sbjct: 2 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDD-LPSRLKLIYAGVTEIITQFQP 60
Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125
+ A+EQVF+ K+A + LKLGQAR +AI++ +PV EYA +K+ V+G+G +K Q
Sbjct: 61 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 120
Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
+ M++ L+ DAADALAIA+ H + + +
Sbjct: 121 VQHMVRTLLKLPANPQADAADALAIAITHCHVSQN 155
>1vhx_A Putative holliday junction resolvase; structural genomics,
hydrolase; 1.96A {Bacillus subtilis} (A:)
Length = 150
Score = 88.0 bits (218), Expect = 5e-19
Identities = 20/126 (15%), Positives = 45/126 (35%), Gaps = 12/126 (9%)
Query: 4 SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
S+RI+G+D G + G + D G + + I L+++IK++
Sbjct: 2 SLRILGLDLGTKTLGVALSDEXGWTAQGIETIKINE-------AEGDYGLSRLSELIKDY 54
Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPV----SEYAPNTIKKAVIGVG 119
++ + N + + ++ A + +PV +K +I
Sbjct: 55 TIDKIVLGFPK-NXNGTVGPRGEASQTFAKVLETTYNVPVVLWDERLTTXAAEKXLIAAD 113
Query: 120 HGDKKQ 125
+K+
Sbjct: 114 VSRQKR 119
>1nu0_A Hypothetical protein YQGF; structural genomics, structure
2 function project, S2F, unknown function; 1.60A
{Escherichia coli} (A:)
Length = 138
Score = 31.0 bits (70), Expect = 0.088
Identities = 3/21 (14%), Positives = 6/21 (28%)
Query: 6 RIIGIDPGLRRTGWGIVDVAG 26
+ D G + G +
Sbjct: 4 TLXAFDFGTKSIGVAVGQRIT 24
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase,
ubiquitination, ring finger, winged-helix; 2.00A
{Saccharomyces cerevisiae} (A:)
Length = 74
Score = 30.8 bits (70), Expect = 0.11
Identities = 5/15 (33%), Positives = 10/15 (66%)
Query: 124 KQIHMMLKMLMPESF 138
+IH LK+ +P+ +
Sbjct: 26 HKIHSFLKITVPKDW 40
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, unknown function; NMR {Thermus
thermophilus} (A:)
Length = 98
Score = 29.7 bits (67), Expect = 0.20
Identities = 12/68 (17%), Positives = 23/68 (33%), Gaps = 15/68 (22%)
Query: 6 RIIGIDPGLRRTGWGIVDVA-GDNLCFVSSG--TIVSCVRQSLAFRLCQLYEGLTDVIKN 62
R+ +D G R G +A G+ ++SG +V + L ++
Sbjct: 2 RVGALDVGEARIG-----LAVGEEGVPLASGRGYLVRKTLEEDVEALLDF-------VRR 49
Query: 63 WRPEEAAV 70
+ V
Sbjct: 50 EGLGKLVV 57
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain,
YQGF domain, transcription, RNA binding protein; 2.27A
{Pseudomonas aeruginosa} (A:326-467)
Length = 142
Score = 29.2 bits (65), Expect = 0.28
Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 7/66 (10%)
Query: 6 RIIGIDPGLR-RTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64
+G+DPGLR +VD G + + T+ ++ + Q L + +
Sbjct: 5 ATLGLDPGLRTGVKVAVVDATGK---LLDTATVYPHAPKN---QWDQTLAVLAALCAKHQ 58
Query: 65 PEEAAV 70
E A+
Sbjct: 59 VELIAI 64
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} (F:1-76)
Length = 76
Score = 26.6 bits (58), Expect = 1.8
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 10/32 (31%)
Query: 122 DKKQIHMM---LKMLMPESFFKGKDAADALAI 150
+K+ + + LK+ D+A ALAI
Sbjct: 18 EKQALKKLQASLKLYAD-------DSAPALAI 42
>1kcf_A Hypothetical 30.2 KD protein C25G10.02 in chromosome I;
beta-alpha-beta motif, RUVC resolvase family,
hydrolase; 2.30A {Schizosaccharomyces pombe} (A:)
Length = 258
Score = 26.5 bits (58), Expect = 2.1
Identities = 6/31 (19%), Positives = 14/31 (45%)
Query: 2 RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFV 32
+ R++GID G++ + D+ +
Sbjct: 37 YPTSRVLGIDLGIKNFSYCFASQNEDSKVII 67
>2z51_A NIFU-like protein 2, chloroplast; CNFU, iron-sulfur
cluster biosynthesis, metal transport; 1.35A
{Arabidopsis thaliana} PDB: 2jnv_A (A:82-154)
Length = 73
Score = 25.8 bits (57), Expect = 3.3
Identities = 12/67 (17%), Positives = 24/67 (35%), Gaps = 12/67 (17%)
Query: 10 IDPGLRRTGWG---IVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
I P L T G +V++ + +G + + +T ++ P
Sbjct: 16 IRPYLIGTADGSLDLVEIEDPIVKIRITGPAAGVM---------TVRVAVTQKLREKIPS 66
Query: 67 EAAVEQV 73
AAV+ +
Sbjct: 67 IAAVQLI 73
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae} (B:1772-1800,B:1916-2006)
Length = 120
Score = 25.5 bits (56), Expect = 4.0
Identities = 8/41 (19%), Positives = 15/41 (36%), Gaps = 16/41 (39%)
Query: 33 SSGTIVSCVRQ--SLAFRLCQLYEGLTDVIKNWRPEEAAVE 71
S ++S + + F Y G+T ++ AV
Sbjct: 1 SLADVMS-IESLVEVVF-----YRGMT--MQV------AVP 27
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine,
structural genomics, NPPSFA; HET: CIT; 1.70A
{Methanosarcina mazei} (A:1-190)
Length = 190
Score = 24.4 bits (51), Expect = 8.3
Identities = 4/15 (26%), Positives = 5/15 (33%)
Query: 121 GDKKQIHMMLKMLMP 135
G H L+P
Sbjct: 2 GSSHHHHHHSSGLVP 16
>1e25_A Extended-spectrum beta-lactamase PER-1; hydrolase,
antibiotic resistance, class A cephalosporinase; 1.9A
{Pseudomonas aeruginosa} (A:39-161)
Length = 123
Score = 24.3 bits (52), Expect = 8.9
Identities = 9/69 (13%), Positives = 17/69 (24%), Gaps = 6/69 (8%)
Query: 100 RIPVSEYAPNTIKKA---VIGVGHGDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156
+ V+ A G + +L+ + S A D L V
Sbjct: 31 TVIVNRAKVLQNTWAPIMKAYQGDEFSVPVQQLLQYSVSHSD---NVACDLLFELVGGPA 87
Query: 157 HANSGYYKI 165
+ +
Sbjct: 88 ALHDYIQSM 96
>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion,
hydrolase; HET: NAD; 2.3A {Flavobacterium
meningosepticum} PDB: 2ixb_A* (A:1-152,A:366-444)
Length = 231
Score = 24.2 bits (52), Expect = 9.8
Identities = 8/41 (19%), Positives = 17/41 (41%)
Query: 92 AILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKM 132
L P+ + ++ P ++ A I VG + + M +
Sbjct: 2 GALIPSSTLFNIFDFNPKKVRIAFIAVGLRGQTHVENMARR 42
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.323 0.136 0.406
Gapped
Lambda K H
0.267 0.0592 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,319,630
Number of extensions: 54608
Number of successful extensions: 165
Number of sequences better than 10.0: 1
Number of HSP's gapped: 160
Number of HSP's successfully gapped: 20
Length of query: 169
Length of database: 4,956,049
Length adjustment: 82
Effective length of query: 87
Effective length of database: 2,184,039
Effective search space: 190011393
Effective search space used: 190011393
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.7 bits)