RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254780554|ref|YP_003064967.1| Holliday junction resolvase
[Candidatus Liberibacter asiaticus str. psy62]
(169 letters)
>d1hjra_ c.55.3.6 (A:) RuvC resolvase {Escherichia coli [TaxId:
562]}
Length = 158
Score = 143 bits (361), Expect = 1e-35
Identities = 62/154 (40%), Positives = 97/154 (62%), Gaps = 1/154 (0%)
Query: 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66
I+GIDPG R TG+G++ G L ++ SG I + L RL +Y G+T++I ++P+
Sbjct: 3 ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTK-VDDLPSRLKLIYAGVTEIITQFQPD 61
Query: 67 EAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQI 126
A+EQVF+ K+A + LKLGQAR +AI++ +PV EYA +K+ V+G+G +K Q+
Sbjct: 62 YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 121
Query: 127 HMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160
M++ L+ DAADALAIA+ H + + +
Sbjct: 122 QHMVRTLLKLPANPQADAADALAIAITHCHVSQN 155
>d1vhxa_ c.55.3.8 (A:) Hypothetical protein YrrK (RuvX) {Bacillus
subtilis [TaxId: 1423]}
Length = 140
Score = 31.2 bits (70), Expect = 0.048
Identities = 14/68 (20%), Positives = 31/68 (45%), Gaps = 9/68 (13%)
Query: 4 SIRIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62
S+RI+G+D G + G VA D + + + G + + L+++IK+
Sbjct: 1 SLRILGLDLGTKTLG-----VALSDEMGWTAQGIETIKINE---AEGDYGLSRLSELIKD 52
Query: 63 WRPEEAAV 70
+ ++ +
Sbjct: 53 YTIDKIVL 60
>d1ldda_ a.4.5.34 (A:) Anaphase promoting complex (APC) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 74
Score = 30.1 bits (68), Expect = 0.098
Identities = 5/14 (35%), Positives = 10/14 (71%)
Query: 125 QIHMMLKMLMPESF 138
+IH LK+ +P+ +
Sbjct: 27 KIHSFLKITVPKDW 40
>d1nu0a_ c.55.3.8 (A:) Hypothetical protein YqgF (RuvX)
{Escherichia coli [TaxId: 562]}
Length = 138
Score = 30.0 bits (67), Expect = 0.11
Identities = 9/66 (13%), Positives = 20/66 (30%), Gaps = 9/66 (13%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65
++ D G + G + + A + + ++K W+P
Sbjct: 4 TLMAFDFGTKSIGVAVGQ---------RITGTARPLPAIKAQDGTPDWNIIERLLKEWQP 54
Query: 66 EEAAVE 71
+E V
Sbjct: 55 DEIIVG 60
>d1iv0a_ c.55.3.8 (A:) Hypothetical protein, YqgF homologue
{Thermus thermophilus [TaxId: 274]}
Length = 98
Score = 26.8 bits (59), Expect = 0.95
Identities = 5/13 (38%), Positives = 7/13 (53%)
Query: 6 RIIGIDPGLRRTG 18
R+ +D G R G
Sbjct: 2 RVGALDVGEARIG 14
>d1xy7a_ d.32.1.9 (A:) Hypothetical protein At5g48480 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 135
Score = 26.8 bits (58), Expect = 1.1
Identities = 3/23 (13%), Positives = 8/23 (34%)
Query: 127 HMMLKMLMPESFFKGKDAADALA 149
H++ + + DA+
Sbjct: 1 HLVFTEFKQMLLVEAQKVGDAVT 23
>d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin
hydrogenase, HMD {Archaeon Methanocaldococcus
jannaschii [TaxId: 2190]}
Length = 242
Score = 26.5 bits (58), Expect = 1.2
Identities = 7/41 (17%), Positives = 12/41 (29%), Gaps = 2/41 (4%)
Query: 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCV 41
+ S G L + +V + CF +V
Sbjct: 39 LTHSSITYGA--ELLHLVPDVKEVIVSDPCFAEEPGLVVID 77
>d1uqwa_ c.94.1.1 (A:) Hypothetical protein YliB {Escherichia coli
[TaxId: 562]}
Length = 487
Score = 24.7 bits (52), Expect = 3.9
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 51 QLYEGLTDVIKNWRPEEAAVEQVFVNKDA-VATLKL 85
Y+GL + K + + E V+ D T+KL
Sbjct: 32 SFYQGLFGLDKEMKLKNVLAESYTVSDDGITYTVKL 67
>d1kcfa2 c.55.3.7 (A:39-256) Mitochondrial resolvase ydc2
catalytic domain {Fission yeast (Schizosaccharomyces
pombe) [TaxId: 4896]}
Length = 218
Score = 25.0 bits (54), Expect = 3.9
Identities = 6/39 (15%), Positives = 19/39 (48%)
Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQS 44
R++GID G++ + D+ + + ++ + ++
Sbjct: 3 RVLGIDLGIKNFSYCFASQNEDSKVIIHNWSVENLTEKN 41
>d3bzka5 c.55.3.13 (A:325-473) Transcriptional accessory factor
Tex {Pseudomonas aeruginosa [TaxId: 287]}
Length = 149
Score = 24.4 bits (53), Expect = 5.2
Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 3/24 (12%)
Query: 6 RIIGIDPGLRRTG--WGIVDVAGD 27
+G+DPGL RTG +VD G
Sbjct: 6 ATLGLDPGL-RTGVKVAVVDATGK 28
>d1y7ta2 d.162.1.1 (A:154-332) Malate dehydrogenase {Thermus
thermophilus [TaxId: 274]}
Length = 173
Score = 24.3 bits (52), Expect = 5.3
Identities = 7/45 (15%), Positives = 13/45 (28%), Gaps = 6/45 (13%)
Query: 85 LGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMM 129
L RA A L+ + I++ + H +
Sbjct: 4 LDHNRAKAQLAKKT------GTGVDRIRRMTVWGNHSSTMFPDLF 42
>d2i7ta1 d.157.1.10 (A:9-459) Cleavage and polyadenylation
specificity factor subunit 3 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 451
Score = 24.4 bits (51), Expect = 6.2
Identities = 5/21 (23%), Positives = 8/21 (38%)
Query: 119 GHGDKKQIHMMLKMLMPESFF 139
H D +Q ++ L P
Sbjct: 387 AHTDYQQTSEFIRALKPPHVI 407
>d2p0la1 d.104.1.3 (A:4-272) Lipoate-protein ligase A {Streptococcus
agalactiae [TaxId: 1311]}
Length = 269
Score = 24.2 bits (52), Expect = 6.4
Identities = 11/55 (20%), Positives = 19/55 (34%), Gaps = 4/55 (7%)
Query: 9 GIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63
G +P +R G V L F ++V + Y + D I++
Sbjct: 78 GYEPVVRNFGGLAVVADEGILNF----SLVIPDVFERKLSISDGYLIMVDFIRSI 128
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.136 0.406
Gapped
Lambda K H
0.267 0.0635 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 644,793
Number of extensions: 27720
Number of successful extensions: 68
Number of sequences better than 10.0: 1
Number of HSP's gapped: 66
Number of HSP's successfully gapped: 14
Length of query: 169
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 90
Effective length of database: 1,322,926
Effective search space: 119063340
Effective search space used: 119063340
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.2 bits)