HHsearch alignment for GI: 254780555 and conserved domain: COG3617
>COG3617 Prophage antirepressor [Transcription].
Probab=92.60 E-value=0.045 Score=33.33 Aligned_cols=38 Identities=37% Similarity=0.814 Sum_probs=32.1
Q ss_pred CCCCCCCCCCCCCEEEEEECCCCEEEEEEECCCCCEEEE
Q ss_conf 974001002568289999179989999821247602212
Q gi|254780555|r 1 MSDMIPFNLEHNPIRIVVDEDGNYWFMVKDVAGGLDFTS 39 (41)
Q Consensus 1 msdmipfnlehnpirivvdedgnywfmvkdvaggldfts 39 (41)
T Consensus 6 ~~~~~~f~F~~~~vRvv~~d~-epwFva~Dva~~Lg~~n 43 (176)
T COG3617 6 MTMLQPFTFEDHAVRVVLDDG-EPWFVAADVARALGYTN 43 (176)
T ss_pred CCCCCCEEECCCEEEEEEECC-CEEEEHHHHHHHHCCCC
T ss_conf 144652740683478997589-65576999999977778