HHsearch alignment for GI: 254780555 and conserved domain: COG3617

>COG3617 Prophage antirepressor [Transcription].
Probab=92.60  E-value=0.045  Score=33.33  Aligned_cols=38  Identities=37%  Similarity=0.814  Sum_probs=32.1

Q ss_pred             CCCCCCCCCCCCCEEEEEECCCCEEEEEEECCCCCEEEE
Q ss_conf             974001002568289999179989999821247602212
Q gi|254780555|r    1 MSDMIPFNLEHNPIRIVVDEDGNYWFMVKDVAGGLDFTS   39 (41)
Q Consensus         1 msdmipfnlehnpirivvdedgnywfmvkdvaggldfts   39 (41)
T Consensus         6 ~~~~~~f~F~~~~vRvv~~d~-epwFva~Dva~~Lg~~n   43 (176)
T COG3617           6 MTMLQPFTFEDHAVRVVLDDG-EPWFVAADVARALGYTN   43 (176)
T ss_pred             CCCCCCEEECCCEEEEEEECC-CEEEEHHHHHHHHCCCC
T ss_conf             144652740683478997589-65576999999977778