BLAST/PSIBLAST alignment of GI: 254780555 and GI: 28199601 at iteration 2
>gi|28199601|ref|NP_779915.1| hypothetical protein PD1726 [Xylella fastidiosa Temecula1] Length = 503
>gi|77747679|ref|NP_779339.2| hypothetical protein PD1133 [Xylella fastidiosa Temecula1] Length = 503
>gi|28057716|gb|AAO29564.1| phage-related protein [Xylella fastidiosa Temecula1] Length = 503
 Score = 54.3 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 17/39 (43%), Positives = 25/39 (64%)

Query: 1   MSDMIPFNLEHNPIRIVVDEDGNYWFMVKDVAGGLDFTS 39
           M+ + PF  E + +R VVD+ G  WF+ KDVA  L +T+
Sbjct: 135 MNAITPFQFESHAVRTVVDDHGEVWFVGKDVADVLGYTN 173