RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780555|ref|YP_003064968.1| hypothetical protein
CLIBASIA_02210 [Candidatus Liberibacter asiaticus str. psy62]
         (41 letters)



>gnl|CDD|33416 COG3617, COG3617, Prophage antirepressor [Transcription].
          Length = 176

 Score = 36.1 bits (83), Expect = 0.002
 Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 1/38 (2%)

Query: 1  MSDMIPFNLEHNPIRIVVDEDGNYWFMVKDVAGGLDFT 38
          M+ + PF  E + +R+V+D DG  WF+  DVA  L +T
Sbjct: 6  MTMLQPFTFEDHAVRVVLD-DGEPWFVAADVARALGYT 42


>gnl|CDD|145567 pfam02498, Bro-N, BRO family, N-terminal domain.  This family
          includes the N-terminus of baculovirus BRO and ALI
          motif proteins. The function of BRO proteins is
          unknown. It has been suggested that BRO-A and BRO-C are
          DNA binding proteins that influence host DNA
          replication and/or transcription. This Pfam domain does
          not include the characteristic invariant alanine,
          leucine, isoleucine motif of the ALI proteins.
          Length = 91

 Score = 29.5 bits (67), Expect = 0.19
 Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 1/26 (3%)

Query: 13 PIRIVVDEDGNYWFMVKDVAGGLDFT 38
           +R  V  +G  WF+ KDVA  L + 
Sbjct: 1  EVR-TVVINGEPWFVAKDVAKALGYK 25


>gnl|CDD|39805 KOG4605, KOG4605, KOG4605, Uncharacterized conserved protein
          containing CDGSH-type Zn-finger [Function unknown].
          Length = 129

 Score = 27.0 bits (59), Expect = 1.2
 Identities = 5/20 (25%), Positives = 9/20 (45%)

Query: 6  PFNLEHNPIRIVVDEDGNYW 25
              +  P+R  V++ G  W
Sbjct: 79 QGRTKLRPVRFKVEKTGMVW 98


>gnl|CDD|38741 KOG3533, KOG3533, KOG3533, Inositol 1,4,5-trisphosphate receptor
           [Signal transduction mechanisms].
          Length = 2706

 Score = 25.0 bits (54), Expect = 5.3
 Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 2/27 (7%)

Query: 5   IPFNLEHNPIRIVVDEDGN--YWFMVK 29
           +P  LE N +R+ +D  GN   WF ++
Sbjct: 143 LPALLEKNAMRVYLDAAGNEGSWFYIE 169


>gnl|CDD|119367 cd01615, CIDE_N, CIDE_N domain, found at the N-terminus of the
          CIDE (cell death-inducing DFF45-like effector)
          proteins, as well as CAD nuclease (caspase-activated
          DNase/DNA fragmentation factor, DFF40) and its
          inhibitor, ICAD(DFF45). These proteins are associated
          with the chromatin condensation and DNA fragmentation
          events of apoptosis; the CIDE_N domain is thought to
          regulate the activity of ICAD/DFF45, and the CAD/DFF40
          and CIDE nucleases during apoptosis. The CIDE-N domain
          is also found in the FSP27/CIDE-C protein..
          Length = 78

 Score = 24.0 bits (53), Expect = 8.0
 Identities = 6/16 (37%), Positives = 10/16 (62%)

Query: 7  FNLEHNPIRIVVDEDG 22
            L   P+ +V++EDG
Sbjct: 34 LKLPSAPVTLVLEEDG 49


>gnl|CDD|29648 cd00563, Dtyr_deacylase, D-Tyrosyl-tRNAtyr deacylases; a class of
          tRNA-dependent hydrolases which are capable of
          hydrolyzing the ester bond of D-Tyrosyl-tRNA reducing
          the level of cellular D-Tyrosine while recycling the
          peptidyl-tRNA; found in bacteria and in eukaryotes but
          not in archea; beta barrel-like fold structure; forms
          homodimers in which two surface cavities serve as the
          active site for tRNA binding.
          Length = 145

 Score = 24.0 bits (52), Expect = 9.2
 Identities = 10/22 (45%), Positives = 13/22 (59%)

Query: 14 IRIVVDEDGNYWFMVKDVAGGL 35
          +RI  DE+G     VKDV G +
Sbjct: 52 LRIFEDEEGKMNLSVKDVNGEI 73


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.324    0.143    0.449 

Gapped
Lambda     K      H
   0.267   0.0773    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 547,277
Number of extensions: 16690
Number of successful extensions: 89
Number of sequences better than 10.0: 1
Number of HSP's gapped: 88
Number of HSP's successfully gapped: 8
Length of query: 41
Length of database: 6,263,737
Length adjustment: 15
Effective length of query: 26
Effective length of database: 5,939,602
Effective search space: 154429652
Effective search space used: 154429652
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.3 bits)