RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780555|ref|YP_003064968.1| hypothetical protein
CLIBASIA_02210 [Candidatus Liberibacter asiaticus str. psy62]
         (41 letters)



>gnl|CDD|183780 PRK12831, PRK12831, putative oxidoreductase; Provisional.
          Length = 464

 Score = 26.9 bits (60), Expect = 1.3
 Identities = 8/19 (42%), Positives = 13/19 (68%)

Query: 5   IPFNLEHNPIRIVVDEDGN 23
           + F+L  NP+ I+ DE+G 
Sbjct: 333 VIFDLLTNPVEILGDENGW 351


>gnl|CDD|183739 PRK12778, PRK12778, putative bifunctional 2-polyprenylphenol
           hydroxylase/glutamate synthase subunit beta;
           Provisional.
          Length = 752

 Score = 26.6 bits (59), Expect = 1.6
 Identities = 9/18 (50%), Positives = 10/18 (55%)

Query: 5   IPFNLEHNPIRIVVDEDG 22
           I F   HNPI  + DE G
Sbjct: 623 IEFLTLHNPIEYLADEKG 640


>gnl|CDD|183895 PRK13208, valS, valyl-tRNA synthetase; Reviewed.
          Length = 800

 Score = 24.8 bits (55), Expect = 4.9
 Identities = 9/14 (64%), Positives = 11/14 (78%), Gaps = 1/14 (7%)

Query: 10  EHN-PIRIVVDEDG 22
           E N P RI++DEDG
Sbjct: 286 ELNLPTRIIIDEDG 299


>gnl|CDD|183738 PRK12775, PRK12775, putative trifunctional 2-polyprenylphenol
           hydroxylase/glutamate synthase subunit beta/ferritin
           domain-containing protein; Provisional.
          Length = 1006

 Score = 24.1 bits (52), Expect = 7.9
 Identities = 8/19 (42%), Positives = 12/19 (63%)

Query: 5   IPFNLEHNPIRIVVDEDGN 23
           I F   H+P+ I VD +G+
Sbjct: 624 IDFFFLHSPVEIYVDAEGS 642


>gnl|CDD|152572 pfam12137, RapA_C, RNA polymerase recycling family C-terminal.
           This domain is found in bacteria. This domain is about
           360 amino acids in length. This domain is found
           associated with pfam00271, pfam00176. The function of
           this domain is not known, but structurally it forms an
           alpha-beta fold in nature with a central beta-sheet
           flanked by helices and loops, the beta-sheet being
           mainly antiparallel and flanked by four alpha helices,
           among which the two longer helices exhibit a coiled-coil
           arrangement.
          Length = 362

 Score = 24.0 bits (53), Expect = 9.1
 Identities = 6/11 (54%), Positives = 11/11 (100%)

Query: 13  PIRIVVDEDGN 23
           PIR+++D++GN
Sbjct: 236 PIRLLLDKNGN 246


>gnl|CDD|179821 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional.
          Length = 570

 Score = 24.1 bits (53), Expect = 9.4
 Identities = 9/15 (60%), Positives = 10/15 (66%), Gaps = 2/15 (13%)

Query: 19  DEDGNYWFM--VKDV 31
           DEDG +WF   V DV
Sbjct: 443 DEDGYFWFQGRVDDV 457


>gnl|CDD|149902 pfam08980, DUF1883, Domain of unknown function (DUF1883).  This
          domain is found in a set of hypothetical bacterial
          proteins.
          Length = 95

 Score = 23.9 bits (52), Expect = 9.4
 Identities = 9/23 (39%), Positives = 14/23 (60%), Gaps = 1/23 (4%)

Query: 12 NPIRIVVDEDGNYWFMVKDVAGG 34
          +P RI V   G+ W++V D+ G 
Sbjct: 54 SPARIAVPSSGH-WYVVVDLEGH 75


>gnl|CDD|181196 PRK08010, PRK08010, pyridine nucleotide-disulfide oxidoreductase;
           Provisional.
          Length = 441

 Score = 23.8 bits (51), Expect = 9.9
 Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 6/31 (19%)

Query: 16  IVVDED-----GNYWFMVKDVAGGLDFTSIT 41
           IVVD+       N W M  DV GGL FT I+
Sbjct: 274 IVVDKYLHTTADNIWAM-GDVTGGLQFTYIS 303


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.324    0.143    0.449 

Gapped
Lambda     K      H
   0.267   0.0614    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 703,812
Number of extensions: 24952
Number of successful extensions: 107
Number of sequences better than 10.0: 1
Number of HSP's gapped: 107
Number of HSP's successfully gapped: 14
Length of query: 41
Length of database: 5,994,473
Length adjustment: 15
Effective length of query: 26
Effective length of database: 5,670,353
Effective search space: 147429178
Effective search space used: 147429178
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.3 bits)