RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780555|ref|YP_003064968.1| hypothetical protein
CLIBASIA_02210 [Candidatus Liberibacter asiaticus str. psy62]
         (41 letters)



>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase,
           translation termination, ATP-binding, cytoplasm,
           hydrolase, membrane; 2.80A {Schizosaccharomyces pombe}
           (A:1-326)
          Length = 326

 Score = 24.0 bits (51), Expect = 7.9
 Identities = 2/11 (18%), Positives = 4/11 (36%)

Query: 11  HNPIRIVVDED 21
            N   I +  +
Sbjct: 314 PNANEIRLKTE 324


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.324    0.143    0.449 

Gapped
Lambda     K      H
   0.267   0.0499    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 362,084
Number of extensions: 10223
Number of successful extensions: 106
Number of sequences better than 10.0: 1
Number of HSP's gapped: 106
Number of HSP's successfully gapped: 6
Length of query: 41
Length of database: 4,956,049
Length adjustment: 14
Effective length of query: 27
Effective length of database: 4,482,779
Effective search space: 121035033
Effective search space used: 121035033
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.6 bits)