RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780555|ref|YP_003064968.1| hypothetical protein
CLIBASIA_02210 [Candidatus Liberibacter asiaticus str. psy62]
         (41 letters)



>3akh_A Putative secreted alpha L-arabinofuranosidase II; five-bladed beta
           propeller, beta-trefoil, hydrolase; HET: AHR; 1.70A
           {Streptomyces avermitilis} PDB: 3akf_A* 3akg_A* 3aki_A*
          Length = 468

 Score = 24.3 bits (52), Expect = 6.7
 Identities = 5/13 (38%), Positives = 6/13 (46%)

Query: 16  IVVDEDGNYWFMV 28
             V EDG    +V
Sbjct: 264 FTVSEDGKSDILV 276


>2b1y_A Hypothetical protein ATU1913; NEW fold, structural genomics, ,
          PSI, protein structure initiative; 1.80A {Agrobacterium
          tumefaciens str} SCOP: b.156.1.1
          Length = 104

 Score = 24.1 bits (52), Expect = 7.4
 Identities = 9/23 (39%), Positives = 13/23 (56%), Gaps = 1/23 (4%)

Query: 12 NPIRIVVDEDGNYWFMVKDVAGG 34
          +PIRI V E  + W ++ D  G 
Sbjct: 59 SPIRIAVPETMH-WHLIIDAEGH 80


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.324    0.143    0.449 

Gapped
Lambda     K      H
   0.267   0.0587    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 406,360
Number of extensions: 11965
Number of successful extensions: 94
Number of sequences better than 10.0: 1
Number of HSP's gapped: 94
Number of HSP's successfully gapped: 6
Length of query: 41
Length of database: 5,693,230
Length adjustment: 14
Effective length of query: 27
Effective length of database: 5,353,814
Effective search space: 144552978
Effective search space used: 144552978
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.4 bits)