BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780555|ref|YP_003064968.1| hypothetical protein
CLIBASIA_02210 [Candidatus Liberibacter asiaticus str. psy62]
         (41 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780555|ref|YP_003064968.1| hypothetical protein CLIBASIA_02210 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 41

 Score = 87.0 bits (214), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 41/41 (100%), Positives = 41/41 (100%)

Query: 1  MSDMIPFNLEHNPIRIVVDEDGNYWFMVKDVAGGLDFTSIT 41
          MSDMIPFNLEHNPIRIVVDEDGNYWFMVKDVAGGLDFTSIT
Sbjct: 1  MSDMIPFNLEHNPIRIVVDEDGNYWFMVKDVAGGLDFTSIT 41


>gi|254780125|ref|YP_003064538.1| prophage antirepressor [Candidatus Liberibacter asiaticus str.
          psy62]
          Length = 262

 Score = 46.6 bits (109), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 19/37 (51%), Positives = 24/37 (64%)

Query: 1  MSDMIPFNLEHNPIRIVVDEDGNYWFMVKDVAGGLDF 37
          MS + PF  E N IR +VD+D N WF+ KDVA  L +
Sbjct: 1  MSTITPFEFESNKIRTIVDKDQNIWFVAKDVATALGY 37


>gi|254780348|ref|YP_003064761.1| 5-amino-6-(5-phosphoribosylamino)uracil
           reductase/diaminohydroxyphosphoribosylaminopyrimidine
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 364

 Score = 21.6 bits (44), Expect = 2.8,   Method: Composition-based stats.
 Identities = 6/10 (60%), Positives = 10/10 (100%)

Query: 10  EHNPIRIVVD 19
           EH+P+RI++D
Sbjct: 216 EHSPMRIILD 225


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.324    0.143    0.449 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,000
Number of Sequences: 1233
Number of extensions: 717
Number of successful extensions: 4
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 41
length of database: 328,796
effective HSP length: 15
effective length of query: 26
effective length of database: 310,301
effective search space:  8067826
effective search space used:  8067826
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.0 bits)
S2: 31 (16.5 bits)