Query gi|254780556|ref|YP_003064969.1| hypothetical protein CLIBASIA_02215 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 120 No_of_seqs 2 out of 4 Neff 1.4 Searched_HMMs 33803 Date Wed Jun 1 16:26:27 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780556.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >3e7k_A TRPM7 channel; coiled- 41.5 28 0.00081 16.5 3.7 27 44-70 2-28 (56) 2 >2oux_A Magnesium transporter; 37.3 26 0.00076 16.6 2.6 47 69-115 32-78 (82) 3 >1gs9_A Apolipoprotein E, APOE 29.5 43 0.0013 15.3 3.0 65 53-117 2-78 (83) 4 >2yvy_A MGTE, Mg2+ transporter 29.0 44 0.0013 15.3 4.6 42 61-102 10-51 (82) 5 >1nfn_A Apolipoprotein E3; lip 26.4 49 0.0015 15.0 3.0 64 54-117 3-78 (86) 6 >2w9y_A CE-FAR-7, fatty acid/r 25.5 40 0.0012 15.5 1.9 20 79-98 38-57 (63) 7 >3c4z_A Rhodopsin kinase; Ser/ 23.1 32 0.00096 16.1 1.1 31 86-116 99-133 (148) 8 >2acx_A G protein-coupled rece 23.0 30 0.00088 16.3 0.9 30 86-115 98-131 (184) 9 >3lto_A Mevalonate diphosphate 21.3 27 0.00079 16.6 0.3 33 38-70 22-54 (151) 10 >2qeu_A Putative carboxymucono 16.8 79 0.0023 13.8 3.6 23 63-85 26-48 (82) No 1 >>3e7k_A TRPM7 channel; coiled-coil, antiparallel, ION channel, assembly domain, membrane protein; 2.01A {Rattus norvegicus} (A:) Probab=41.46 E-value=28 Score=16.47 Aligned_cols=27 Identities=26% Similarity=0.310 Sum_probs=22.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 988999999999999999999765476 Q gi|254780556|r 44 EAHKLAKEYVEQANQRVKEAEEQSNAR 70 (120) Q Consensus 44 E~HkLA~E~VE~A~~RVKE~EE~s~A~ 70 (120) |--|...||||.--++++|+.|+-|.- T Consensus 2 ERIrvT~ERVE~M~~~leeVneken~~ 28 (56) T 3e7k_A 2 AGSRVTFERVEQMSIQIKEVGDRVNYI 28 (56) T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 985007999999999999997899999 No 2 >>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, protein structure initiative, nysgxrc; 2.16A {Enterococcus faecalis V583} (A:59-140) Probab=37.27 E-value=26 Score=16.63 Aligned_cols=47 Identities=21% Similarity=0.347 Sum_probs=23.3 Q ss_pred HHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 76771379999999993668011466556688998988999999866 Q gi|254780556|r 69 ARLLKGLGMDDLVRYFMNLDSQNQAFFIDTIQNKYQDEMEELSEFGE 115 (120) Q Consensus 69 A~llk~L~~D~L~~~F~~L~~~~~~~F~~~i~~~yqdemeelsefge 115 (120) +.++..++-||++.-+-+|..+-+...+.....+-+..+..|..|.+ T Consensus 32 ~~il~~l~~Dd~adll~~lp~~~~~~il~~l~~~~r~~i~~ll~Y~e 78 (82) T 2oux_A 32 ADXLAEXYTDNAVDLLNXLDKSQKAKYLSLLSSEEAGEIKELLHYED 78 (82) T ss_dssp HHHHTTSCHHHHHHHHHHSCHHHHHHHHHTSCHHHHHHHHHHTTSCT T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99998657046667788620888889987301457899999752027 No 3 >>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} (A:1-83) Probab=29.54 E-value=43 Score=15.33 Aligned_cols=65 Identities=18% Similarity=0.183 Sum_probs=37.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHH------------HHHHHHHHHHHHHHHHH Q ss_conf 999999999999765476771379999999993668011466556688------------99898899999986664 Q gi|254780556|r 53 VEQANQRVKEAEEQSNARLLKGLGMDDLVRYFMNLDSQNQAFFIDTIQ------------NKYQDEMEELSEFGEKV 117 (120) Q Consensus 53 VE~A~~RVKE~EE~s~A~llk~L~~D~L~~~F~~L~~~~~~~F~~~i~------------~~yqdemeelsefgekv 117 (120) |||+-.---|.+-++-++---+-.-+..++-|||.-++-++---+.+. --.+|.|.|++-+.+.+ T Consensus 2 ~~~~~~~~pe~~~~av~~~qa~~~weq~~~rFWdY~~~L~~~A~e~ve~lq~SqitqEL~tLiqDtM~El~~Y~~dL 78 (83) T 1gs9_A 2 VEQAVETEPEPELRQQTEWQSGQRWELALGRFWDYLRWVQTLSEQVQEELLSSQVTQELRALMDETMKELKAYKSEL 78 (83) T ss_dssp --------------------CCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 52301369986788764640442699999879999999999999999999988999999999999999999989999 No 4 >>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus HB8} PDB: 2yvz_A (A:56-137) Probab=29.04 E-value=44 Score=15.28 Aligned_cols=42 Identities=17% Similarity=0.145 Sum_probs=27.1 Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHH Q ss_conf 999976547677137999999999366801146655668899 Q gi|254780556|r 61 KEAEEQSNARLLKGLGMDDLVRYFMNLDSQNQAFFIDTIQNK 102 (120) Q Consensus 61 KE~EE~s~A~llk~L~~D~L~~~F~~L~~~~~~~F~~~i~~~ 102 (120) .+.++..-.++++.++.++++..+-++++.+.+-++..+..+ T Consensus 10 ~el~~~~q~~li~~l~~~~~~~il~~m~~DD~~dll~~Lp~~ 51 (82) T 2yvy_A 10 SHLSPEEQAEYLKTLPPWRLREILEELSLDDLADALQAVRKE 51 (82) T ss_dssp HTSCHHHHHHHHHHSCHHHHHHHHHHSCHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHCCHH T ss_conf 970099999999850178999998751612689999864124 No 5 >>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} (A:1-86) Probab=26.44 E-value=49 Score=15.01 Aligned_cols=64 Identities=17% Similarity=0.191 Sum_probs=30.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHH------------HHHHHHHHHHHHHHHHHHH Q ss_conf 999999999997654767713799999999936680114665566------------8899898899999986664 Q gi|254780556|r 54 EQANQRVKEAEEQSNARLLKGLGMDDLVRYFMNLDSQNQAFFIDT------------IQNKYQDEMEELSEFGEKV 117 (120) Q Consensus 54 E~A~~RVKE~EE~s~A~llk~L~~D~L~~~F~~L~~~~~~~F~~~------------i~~~yqdemeelsefgekv 117 (120) |++-.---|.+-++-++---+-..|..+..||+.-++-+.---+. +--+.+|.|.+++.+-.++ T Consensus 3 ~~~~~~~~~~~~~~~~~dep~~~we~v~d~fWdYv~~v~~~a~d~v~ql~~SqlgqeLn~li~Dtm~el~~Y~~~L 78 (86) T 1nfn_A 3 EQAVETEPEPELRQQTEWQSGQRWELALGRFWDYLRWVQTLSEQVQEELLSSQVTQELRALMDETMKELKAYKSEL 78 (86) T ss_dssp --------------------CCHHHHHHHHHHHHHHHHHHCCHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred CCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 6555899986257776201122099999999999999987469999999877999999889999999999999999 No 6 >>2w9y_A CE-FAR-7, fatty acid/retinol binding protein protein 7, isoform A, confirmed by transcript...; lipid transport; HET: CSX; 1.80A {Caenorhabditis elegans} (A:78-140) Probab=25.46 E-value=40 Score=15.53 Aligned_cols=20 Identities=30% Similarity=0.358 Sum_probs=16.2 Q ss_pred HHHHHHHCCCCCHHHHHHHH Q ss_conf 99999936680114665566 Q gi|254780556|r 79 DLVRYFMNLDSQNQAFFIDT 98 (120) Q Consensus 79 ~L~~~F~~L~~~~~~~F~~~ 98 (120) .|-+.|-.||++||++.-.| T Consensus 38 rLH~~Fq~ls~edqaal~kn 57 (63) T 2w9y_A 38 RLHQEFQSLSSEDQAALRKN 57 (63) T ss_dssp HHHHHHHTSCHHHHHHHHHH T ss_pred HHHHHHHCCCHHHHHHHHHH T ss_conf 99999872799999999987 No 7 >>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled receptor kinase, GRK, GRK1, P-loop, autophosphorylation, ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 2i94_B (A:183-267,A:481-543) Probab=23.12 E-value=32 Score=16.06 Aligned_cols=31 Identities=29% Similarity=0.499 Sum_probs=23.4 Q ss_pred CCCCCHHHHH----HHHHHHHHHHHHHHHHHHHHH Q ss_conf 6680114665----566889989889999998666 Q gi|254780556|r 86 NLDSQNQAFF----IDTIQNKYQDEMEELSEFGEK 116 (120) Q Consensus 86 ~L~~~~~~~F----~~~i~~~yqdemeelsefgek 116 (120) +||..|..|| +|+|--.+|.||-|-.-|+|- T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (148) T 3c4z_A 99 AFEKADTEFFQEFASGTCPIPWQEEMIETGVFGDL 133 (148) T ss_dssp CCCHHHHHHHHHHCCEECHHHHHHHHHHTTHHHHH T ss_pred CCCHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCCC T ss_conf 66512477874257899988653254532567870 No 8 >>2acx_A G protein-coupled receptor kinase 6; GRK, GRK6, transferase; HET: ANP; 2.60A {Homo sapiens} (A:182-266,A:478-576) Probab=22.97 E-value=30 Score=16.26 Aligned_cols=30 Identities=30% Similarity=0.467 Sum_probs=22.7 Q ss_pred CCCCCHHHH----HHHHHHHHHHHHHHHHHHHHH Q ss_conf 668011466----556688998988999999866 Q gi|254780556|r 86 NLDSQNQAF----FIDTIQNKYQDEMEELSEFGE 115 (120) Q Consensus 86 ~L~~~~~~~----F~~~i~~~yqdemeelsefge 115 (120) +||..|..| -+|+|---+|.||-|-.-|+| T Consensus 98 ~~~~~d~~f~~~f~~g~~~i~wq~emiet~~f~~ 131 (184) T 2acx_A 98 ELEPTDQDFYQKFATGSVPIPWQNEMVETECFQE 131 (184) T ss_dssp --CHHHHHHHHHHCCEECHHHHHHHHHHTTHHHH T ss_pred CCCCCHHHHHHHHCCCCCCCHHHHHCCCCHHHHH T ss_conf 7893157898761247888044440012001465 No 9 >>3lto_A Mevalonate diphosphate decarboxylase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.27A {Legionella pneumophila} (A:173-323) Probab=21.35 E-value=27 Score=16.55 Aligned_cols=33 Identities=9% Similarity=0.105 Sum_probs=27.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 657899988999999999999999999765476 Q gi|254780556|r 38 AKMEVLEAHKLAKEYVEQANQRVKEAEEQSNAR 70 (120) Q Consensus 38 A~~~v~E~HkLA~E~VE~A~~RVKE~EE~s~A~ 70 (120) .-|+..+++.+.+.|++++++|.+++++--..+ T Consensus 22 ~gM~tv~tSp~y~~w~~~~~~~l~~~~~Ai~~~ 54 (151) T 3lto_A 22 VAHKLVKTSPFYETRSERAEANLKLLLNAFENK 54 (151) T ss_dssp HHHHHGGGSTTTTTHHHHHHHHHHHHHHHHHTT T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCC T ss_conf 888522468453999999788699999999809 No 10 >>2qeu_A Putative carboxymuconolactone decarboxylase; YP_555818.1, carboxymuconolactone decarboxylase family, structural genomics; HET: CIT GOL; 1.65A {Burkholderia xenovorans LB400} (A:60-141) Probab=16.85 E-value=79 Score=13.83 Aligned_cols=23 Identities=22% Similarity=0.391 Sum_probs=16.1 Q ss_pred HHHHHHHHHHHCCCHHHHHHHHH Q ss_conf 99765476771379999999993 Q gi|254780556|r 63 AEEQSNARLLKGLGMDDLVRYFM 85 (120) Q Consensus 63 ~EE~s~A~llk~L~~D~L~~~F~ 85 (120) +-..+-|..--||+||+|+..|. T Consensus 26 ak~HavAA~~AGLtmeELvE~~v 48 (82) T 2qeu_A 26 IVNHTRAAXNAGLSVDELIEGIL 48 (82) T ss_dssp HHHHHHHHHHTTCCHHHHHHHHH T ss_pred HHHHHHHHHHCCCCHHHHHHHHH T ss_conf 99999999983798999999999 Done!