Query gi|254780556|ref|YP_003064969.1| hypothetical protein CLIBASIA_02215 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 120
No_of_seqs 2 out of 4
Neff 1.4
Searched_HMMs 13730
Date Wed Jun 1 09:12:54 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780556.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2ouxa1 a.118.26.1 (A:6-135) M 35.4 11 0.0008 16.5 2.4 37 69-105 72-108 (130)
2 d2i52a1 d.316.1.1 (A:1-120) Hy 16.8 17 0.0012 15.5 0.4 20 81-101 6-25 (120)
3 d1gph11 c.61.1.1 (1:235-465) G 11.9 33 0.0024 13.8 0.9 44 55-98 162-210 (231)
4 d2cdqa1 c.73.1.3 (A:25-328) As 10.7 44 0.0032 13.1 1.1 10 109-118 118-127 (304)
5 d1f7la_ d.150.1.2 (A:) Holo-(a 10.1 25 0.0018 14.5 -0.3 14 19-32 5-18 (118)
6 d2yvxa1 a.118.26.1 (A:7-131) M 9.6 53 0.0039 12.6 3.3 45 61-105 56-100 (125)
7 d1ufwa_ d.58.7.1 (A:) Synaptoj 8.0 62 0.0045 12.2 1.5 26 88-116 26-51 (95)
8 d1ftha_ d.150.1.2 (A:) Holo-(a 7.6 36 0.0026 13.5 -0.3 14 19-32 5-18 (117)
9 d1ddba_ f.1.4.1 (A:) Proapopto 7.6 65 0.0048 12.0 2.1 32 77-108 106-143 (195)
10 d1tlha_ a.150.1.1 (A:) Anti-si 7.5 62 0.0045 12.2 0.9 16 67-82 12-27 (89)
No 1
>d2ouxa1 a.118.26.1 (A:6-135) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}
Probab=35.43 E-value=11 Score=16.53 Aligned_cols=37 Identities=5% Similarity=0.109 Sum_probs=18.1
Q ss_pred HHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 7677137999999999366801146655668899898
Q gi|254780556|r 69 ARLLKGLGMDDLVRYFMNLDSQNQAFFIDTIQNKYQD 105 (120)
Q Consensus 69 A~llk~L~~D~L~~~F~~L~~~~~~~F~~~i~~~yqd 105 (120)
..++..++-+.+++.+-.+++.|.+-+++.+..+.++
T Consensus 72 ~~il~~l~~~~~a~il~~m~~DDaadll~~L~~~~~~ 108 (130)
T d2ouxa1 72 KDYLAEMRPSYAADMLAEMYTDNAVDLLNMLDKSQKA 108 (130)
T ss_dssp THHHHHSCHHHHHHHHTTSCHHHHHHHHHHSCHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHH
T ss_conf 9998669999999999876868799999979999999
No 2
>d2i52a1 d.316.1.1 (A:1-120) Hypothetical protein PTO0218 {Picrophilus torridus [TaxId: 82076]}
Probab=16.81 E-value=17 Score=15.48 Aligned_cols=20 Identities=35% Similarity=0.559 Sum_probs=16.3
Q ss_pred HHHHHCCCCCHHHHHHHHHHH
Q ss_conf 999936680114665566889
Q gi|254780556|r 81 VRYFMNLDSQNQAFFIDTIQN 101 (120)
Q Consensus 81 ~~~F~~L~~~~~~~F~~~i~~ 101 (120)
..|| |+.|.++|.|-+.|+-
T Consensus 6 ~kYF-n~TdrerA~FEaGIkl 25 (120)
T d2i52a1 6 EKYF-NCTDIQRAFFEAGIKL 25 (120)
T ss_dssp GGGC-CSCHHHHHHHHHHHHH
T ss_pred HHHC-CCCCHHHHHHHHHHHH
T ss_conf 8663-7884888887630113
No 3
>d1gph11 c.61.1.1 (1:235-465) Glutamine PRPP amidotransferase, C-terminal domain {Bacillus subtilis [TaxId: 1423]}
Probab=11.87 E-value=33 Score=13.75 Aligned_cols=44 Identities=23% Similarity=0.293 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHC-CCCCH----HHHHHHH
Q ss_conf 99999999997654767713799999999936-68011----4665566
Q gi|254780556|r 55 QANQRVKEAEEQSNARLLKGLGMDDLVRYFMN-LDSQN----QAFFIDT 98 (120)
Q Consensus 55 ~A~~RVKE~EE~s~A~llk~L~~D~L~~~F~~-L~~~~----~~~F~~~ 98 (120)
++++-+.|..+.-.|--|.=|++++|.++.-. .++.+ -+-|+|+
T Consensus 162 A~~~t~eEI~~~igaDSL~Ylsle~L~~ai~~~~~~~~~~~C~aCFtG~ 210 (231)
T d1gph11 162 ASSHSVDEIRQEIGADTLSFLSVEGLLKGIGRKYDDSNCGQCLACFTGK 210 (231)
T ss_dssp HHHCCHHHHHHHHTCSEEEECCHHHHHHHHCCCCSSTTTTEECHHHHSC
T ss_pred HCCCCHHHHHHHHCCCEEEECCHHHHHHHHHCCCCCCCCCCCCEEECCE
T ss_conf 2246889997552478667026999999984214787777578664782
No 4
>d2cdqa1 c.73.1.3 (A:25-328) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=10.67 E-value=44 Score=13.06 Aligned_cols=10 Identities=50% Similarity=0.630 Sum_probs=4.5
Q ss_pred HHHHHHHHHH
Q ss_conf 9999866641
Q gi|254780556|r 109 ELSEFGEKVS 118 (120)
Q Consensus 109 elsefgekvs 118 (120)
.+.-|||..|
T Consensus 118 ~ils~GE~lS 127 (304)
T d2cdqa1 118 YLVSFGECLS 127 (304)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
T ss_conf 8877677998
No 5
>d1f7la_ d.150.1.2 (A:) Holo-(acyl carrier protein) synthase ACPS {Bacillus subtilis [TaxId: 1423]}
Probab=10.13 E-value=25 Score=14.49 Aligned_cols=14 Identities=43% Similarity=0.631 Sum_probs=11.8
Q ss_pred HHCHHHCCCHHHHH
Q ss_conf 60002201026799
Q gi|254780556|r 19 IGCSLVEDNRIESL 32 (120)
Q Consensus 19 ~GC~lVEDNri~S~ 32 (120)
+|||||+-.|++.+
T Consensus 5 IG~Div~i~Ri~~~ 18 (118)
T d1f7la_ 5 IGLDITELKRIASM 18 (118)
T ss_dssp EEEEEEEHHHHHHH
T ss_pred EEEEEEEHHHHHHH
T ss_conf 99987677999999
No 6
>d2yvxa1 a.118.26.1 (A:7-131) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=9.64 E-value=53 Score=12.55 Aligned_cols=45 Identities=16% Similarity=0.111 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 999976547677137999999999366801146655668899898
Q gi|254780556|r 61 KEAEEQSNARLLKGLGMDDLVRYFMNLDSQNQAFFIDTIQNKYQD 105 (120)
Q Consensus 61 KE~EE~s~A~llk~L~~D~L~~~F~~L~~~~~~~F~~~i~~~yqd 105 (120)
.+.++..-.+++..++.++++..+-.+++.|.+-+.+..-.+-+.
T Consensus 56 ~~L~~~~~~~il~~l~~~~~~~~l~~m~~DD~adll~~L~~e~~~ 100 (125)
T d2yvxa1 56 SHLSPEEQAEYLKTLPPWRLREILEELSLDDLADALQAVRKEDPA 100 (125)
T ss_dssp HTSCHHHHHHTTSSSCHHHHHHHTTSSCHHHHHHHHHHHHTTCHH
T ss_pred HHCCHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHCCHHHHH
T ss_conf 967999999999707899999999878945799999978887799
No 7
>d1ufwa_ d.58.7.1 (A:) Synaptojanin 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.02 E-value=62 Score=12.16 Aligned_cols=26 Identities=15% Similarity=0.362 Sum_probs=18.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 80114665566889989889999998666
Q gi|254780556|r 88 DSQNQAFFIDTIQNKYQDEMEELSEFGEK 116 (120)
Q Consensus 88 ~~~~~~~F~~~i~~~yqdemeelsefgek 116 (120)
+.+.+++|-++..++ -+++|++|||-
T Consensus 26 s~e~~~~FDe~l~~~---Llq~l~~~GeV 51 (95)
T d1ufwa_ 26 TLEEKNEFPEDLRTE---LMQTLGSYGTI 51 (95)
T ss_dssp CHHHHHSCCHHHHHH---HHHHHHHHSCC
T ss_pred CCCCCCCCCHHHHHH---HHHHHHHCCEE
T ss_conf 831156588899999---99998637819
No 8
>d1ftha_ d.150.1.2 (A:) Holo-(acyl carrier protein) synthase ACPS {Streptococcus pneumoniae [TaxId: 1313]}
Probab=7.63 E-value=36 Score=13.54 Aligned_cols=14 Identities=36% Similarity=0.297 Sum_probs=0.0
Q ss_pred HHCHHHCCCHHHHH
Q ss_conf 60002201026799
Q gi|254780556|r 19 IGCSLVEDNRIESL 32 (120)
Q Consensus 19 ~GC~lVEDNri~S~ 32 (120)
+|||||+-.|++..
T Consensus 5 IG~Div~i~Ri~~~ 18 (117)
T d1ftha_ 5 HGIDIEELASIESA 18 (117)
T ss_dssp EEEEEEEHHHHHHH
T ss_pred EEEEEEEHHHHHHH
T ss_conf 98877685999999
No 9
>d1ddba_ f.1.4.1 (A:) Proapoptotic molecule Bid {Mouse (Mus musculus) [TaxId: 10090]}
Probab=7.58 E-value=65 Score=12.04 Aligned_cols=32 Identities=25% Similarity=0.452 Sum_probs=0.0
Q ss_pred HHHHHHHHH--CCCCC----HHHHHHHHHHHHHHHHHH
Q ss_conf 999999993--66801----146655668899898899
Q gi|254780556|r 77 MDDLVRYFM--NLDSQ----NQAFFIDTIQNKYQDEME 108 (120)
Q Consensus 77 ~D~L~~~F~--~L~~~----~~~~F~~~i~~~yqdeme 108 (120)
|+.|+..|+ +|+.| .-++-...+.|-|..+||
T Consensus 106 V~~La~~f~N~sLseEd~~~~Laa~ve~l~qa~P~d~e 143 (195)
T d1ddba_ 106 VRQLAAQFMNGSLSEEDKRNCLAKALDEVKTAFPRDME 143 (195)
T ss_dssp HHHHHHHHCCSSSSSSSTTHHHHHHHHHHHHHSCSTHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHH
T ss_conf 99999999864535899999999999999987683277
No 10
>d1tlha_ a.150.1.1 (A:) Anti-sigma factor AsiA {Bacteriophage T4 [TaxId: 10665]}
Probab=7.55 E-value=62 Score=12.17 Aligned_cols=16 Identities=25% Similarity=0.414 Sum_probs=0.0
Q ss_pred HHHHHHHCCCHHHHHH
Q ss_conf 5476771379999999
Q gi|254780556|r 67 SNARLLKGLGMDDLVR 82 (120)
Q Consensus 67 s~A~llk~L~~D~L~~ 82 (120)
+.||+|-|+|.||.+.
T Consensus 12 t~aSiLIK~~~edI~~ 27 (89)
T d1tlha_ 12 TVASILIKFSREDIVE 27 (89)
T ss_dssp HHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHCCHHHHHH
T ss_conf 9999999836999987
Done!