RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780556|ref|YP_003064969.1| hypothetical protein
CLIBASIA_02215 [Candidatus Liberibacter asiaticus str. psy62]
(120 letters)
>gnl|CDD|162371 TIGR01456, CECR5, HAD-superfamily class IIA hydrolase, TIGR01456,
CECR5. The Schizosaccharomyces pombe sequence
(EGAD|138276) is annotated as "phosphatidyl synthase,"
however this is due entirely to a C-terminal region of
the protein (outside the region of similarity of this
model) which is highly homologous to a family of
CDP-alcohol phosphatidyltransferases. (Thus, the
annotation of GP|4226073 from C. elegans as similar to
phosphatidyl synthase, is a mistake as this gene does
not contain the C-terminal portion). The physical
connection of the phosphatidyl synthase and the
HAD-superfamily hydrolase domain in S. pombe may,
however, be an important clue to the substrate for the
hydrolases in this equivalog.
Length = 321
Score = 31.8 bits (72), Expect = 0.046
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 6/66 (9%)
Query: 29 IESLRMVKEAKMEVLEAHKLAKEYVEQANQRVKEAEEQSNARLLKGLG------MDDLVR 82
I SL V + ++V+++H K V + +R+ S + +G G D++VR
Sbjct: 57 ISSLLGVDVSPLQVIQSHSPYKSLVNKYEKRILAVGTGSVRGVAEGYGFQNVVHQDEIVR 116
Query: 83 YFMNLD 88
YF ++D
Sbjct: 117 YFRDID 122
>gnl|CDD|179290 PRK01388, PRK01388, arginine deiminase; Provisional.
Length = 406
Score = 29.0 bits (66), Expect = 0.31
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 41 EVLEAHKLAKEYVEQANQRVKEAEEQSNARLLKGLGMDDLVR-YFMNLDSQNQA 93
EVL L E + R + Q + + GLG+ D +R Y +LD++ A
Sbjct: 66 EVLYLEDLLAETLANPEAREWFLDRQISEARV-GLGLADELRAYLESLDNRELA 118
>gnl|CDD|178963 PRK00290, dnaK, molecular chaperone DnaK; Provisional.
Length = 627
Score = 27.4 bits (62), Expect = 0.86
Identities = 21/47 (44%), Positives = 24/47 (51%), Gaps = 11/47 (23%)
Query: 16 ITIIGCSLVEDNRIESLRMVKEAKMEVLEAH----KLAKEYVEQANQ 58
ITI S + D IE RMVK+A EA+ K KE VE NQ
Sbjct: 492 ITITASSGLSDEEIE--RMVKDA-----EANAEEDKKRKELVEARNQ 531
>gnl|CDD|177896 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase.
Length = 358
Score = 27.4 bits (61), Expect = 0.87
Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 77 MDDLVRYFMNLDSQNQAFFIDTIQNKYQDEMEELSE 112
M + + L Q+ F D ++ +YQ EM++L+E
Sbjct: 145 MGSPLEHARQLWPQDHTKFCDVME-EYQKEMKKLAE 179
>gnl|CDD|183692 PRK12704, PRK12704, phosphodiesterase; Provisional.
Length = 520
Score = 27.4 bits (62), Expect = 1.0
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 22 SLVEDNRIESLRMVKEAKMEV-LEAHKLAKEYVEQANQRV 60
+ E+ R E+ ++KE + E EA K AKE + QA QR
Sbjct: 162 KVEEEARHEAAVLIKEIEEEAKEEADKKAKEILAQAIQRC 201
>gnl|CDD|169386 PRK08334, PRK08334, translation initiation factor IF-2B subunit
beta; Validated.
Length = 356
Score = 26.9 bits (59), Expect = 1.3
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 22 SLVEDNRIESLRMVKEAKMEVLEAHKLAKEYVEQANQRV 60
LVE++ + L +K ++ V EA K+A E VE AN R+
Sbjct: 115 KLVEEHLEDPLDEIK--RLIVEEAQKIADEDVE-ANLRM 150
>gnl|CDD|180492 PRK06256, PRK06256, biotin synthase; Validated.
Length = 336
Score = 26.7 bits (60), Expect = 1.4
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 26 DNRIESLRMVKEAKMEV 42
++RI++ MVK A +E
Sbjct: 187 EDRIDTCEMVKAAGIEP 203
>gnl|CDD|131951 TIGR02905, spore_yutH, spore coat protein YutH. Members of this
family are homologs of the Bacillus subtilis spore coat
protein CotS. Members of this family, designated YutH,
are found only in the family Bacillaceae from among the
endospore-forming members of the Firmicutes branch of
the Bacteria.
Length = 313
Score = 26.3 bits (58), Expect = 2.0
Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 74 GLGMDDLVRY--FMNLDSQNQAFFIDTIQNKYQDEMEELSEFGE 115
GL D+ R + + NQA+ I + ++E+ EL +
Sbjct: 9 GLYCDERFRVGRYEAFRANNQAYLIVPVDGLEEEELAELMAMSD 52
>gnl|CDD|114591 pfam05873, Mt_ATP-synt_D, ATP synthase D chain, mitochondrial
(ATP5H). This family consists of several ATP synthase D
chain, mitochondrial (ATP5H) proteins. Subunit d has no
extensive hydrophobic sequences, and is not apparently
related to any subunit described in the simpler ATP
synthases in bacteria and chloroplasts.
Length = 160
Score = 26.0 bits (57), Expect = 2.4
Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 4/56 (7%)
Query: 33 RMVKEAKMEVLEAHKLAKEYVEQANQRVKEAEEQ----SNARLLKGLGMDDLVRYF 84
+ E E K EY ++ R++E E++ N + M+D F
Sbjct: 84 KYTALVDAEEKEDVKRIAEYKTKSADRIQEYEKELEKWKNMIPYDQMTMEDFNEAF 139
>gnl|CDD|181845 PRK09425, prpD, 2-methylcitrate dehydratase; Provisional.
Length = 480
Score = 26.0 bits (58), Expect = 2.6
Identities = 10/29 (34%), Positives = 18/29 (62%), Gaps = 4/29 (13%)
Query: 26 DNRIESLRMVKEAKMEVLEAHKLAKEYVE 54
D RI++LR KM V+E + ++Y++
Sbjct: 370 DPRIDALR----EKMVVVEDPQFTRDYLD 394
>gnl|CDD|130736 TIGR01675, plant-AP, plant acid phosphatase. This model
explicitly excludes the VSPs which lack the nucleophilc
aspartate. The possibility exists, however, that some
members of this family may, while containing all of the
conserved HAD-superfamily catalytic residues, lack
activity and have a function related to the function of
the VSPs rather than the acid phosphatases.
Length = 229
Score = 25.9 bits (57), Expect = 3.0
Identities = 16/55 (29%), Positives = 24/55 (43%)
Query: 24 VEDNRIESLRMVKEAKMEVLEAHKLAKEYVEQANQRVKEAEEQSNARLLKGLGMD 78
VE N I V + +E + +K+Y + V EA + + L G GMD
Sbjct: 24 VETNNIRDWDTVPAECKDYVEDYMTSKQYKRDVKRVVDEAYFYAKSLALSGDGMD 78
>gnl|CDD|162330 TIGR01381, E1_like_apg7, E1-like protein-activating enzyme
Gsa7p/Apg7p. This model represents a family of
eukaryotic proteins found in animals, plants, and
yeasts, including Apg7p (YHR171W) from Saccharomyces
cerevisiae and GSA7 from Pichia pastoris. Members are
about 650 to 700 residues in length and include a
central domain of about 150 residues shared with the
ThiF/MoeB/HesA family of proteins. A low level of
similarity to ubiquitin-activating enzyme E1 is
described in a paper on peroxisome autophagy mediated by
GSA7, and is the basis of the name ubiquitin activating
enzyme E1-like protein. Members of the family appear to
be involved in protein lipidation events analogous to
ubiquitination and required for membrane fusion events
during autophagy.
Length = 664
Score = 25.7 bits (56), Expect = 3.3
Identities = 9/24 (37%), Positives = 13/24 (54%), Gaps = 3/24 (12%)
Query: 90 QNQAFFIDTIQNKYQDEMEELSEF 113
N FF+ + Q+ +M ELSE
Sbjct: 181 NNFPFFLYSKQS---SKMLELSEL 201
>gnl|CDD|183190 PRK11548, PRK11548, outer membrane biogenesis protein BamE;
Provisional.
Length = 113
Score = 25.5 bits (56), Expect = 3.9
Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 1 MRAKTLLASTLVTTAITIIGCSLVE 25
MR KTL A+ V +T GCS +E
Sbjct: 1 MRCKTLTAAAAVLLMLT-AGCSTLE 24
>gnl|CDD|162191 TIGR01073, pcrA, ATP-dependent DNA helicase PcrA. Designed to
identify pcrA members of the uvrD/rep subfamily.
Length = 726
Score = 25.1 bits (55), Expect = 4.3
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Query: 34 MVKEAKMEVLEAHKLAKEYVEQANQRVKEAEEQSNARLLKG--LGMDDLVRYFMNLDSQN 91
+ AK E+L AKE + V E ++ RLL+ L DDL+ +NL +
Sbjct: 140 TISNAKNELLPPEDFAKEATNYFEKVVAEVYQEYQKRLLRNNALDFDDLIMTTINLFQRV 199
Query: 92 QAFFIDTIQNKYQ 104
++ Q K+Q
Sbjct: 200 PD-VLEYYQRKFQ 211
>gnl|CDD|132362 TIGR03319, YmdA_YtgF, conserved hypothetical protein YmdA/YtgF.
Length = 514
Score = 25.3 bits (56), Expect = 4.4
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 15 AITIIGCSLVEDNRIESLRMVKEAKMEV-LEAHKLAKEYVEQANQR 59
A I+ + E+ R E+ +++KE + E EA K AKE + A QR
Sbjct: 149 AKEILLEEVEEEARHEAAKLIKEIEEEAKEEADKKAKEILATAIQR 194
>gnl|CDD|115046 pfam06364, DUF1068, Protein of unknown function (DUF1068). This
family consists of several hypothetical plant proteins
from Arabidopsis thaliana and Oryza sativa. The function
of this family is unknown.
Length = 176
Score = 25.0 bits (54), Expect = 4.6
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 30 ESLRMVKEAKMEVLEAHKLAKEYVEQANQ------RVKEAEEQSNARLLK 73
ES K A + +LEA KL Y ++A++ +EA E++ L++
Sbjct: 100 ESTEKHKRADVGLLEAKKLTSSYQKEADKCNSGMETCEEAREKAEEALVE 149
>gnl|CDD|169691 PRK09173, PRK09173, F0F1 ATP synthase subunit B; Validated.
Length = 159
Score = 24.7 bits (54), Expect = 5.4
Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
Query: 36 KEAKMEVLEAHKLAKEYVEQAN----QRVKEAEE 65
+EA+ EA + +EYV + N Q++ +AE
Sbjct: 79 REAEALTAEAKRKTEEYVARRNKLAEQKIAQAET 112
>gnl|CDD|180251 PRK05776, PRK05776, DNA topoisomerase I; Provisional.
Length = 670
Score = 25.0 bits (55), Expect = 5.7
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 27 NRIESLRMVKEAKMEVLEAHKLAKEYVEQANQRVKEAEEQSNARLLKGLGMDDLVR 82
++E +R K + EV+E AKE + + + K+ +++ L K LG+ V
Sbjct: 545 EKLEMIRTGKATREEVIEE---AKETLNKLLEEFKKNKDEIGEELAKALGLIKPVG 597
>gnl|CDD|130575 TIGR01511, ATPase-IB1_Cu, copper-(or silver)-translocating P-type
ATPase. One member from Halobacterium is annotated as
"molybdenum-binding protein" although no evidence can be
found for this classification.
Length = 562
Score = 24.2 bits (53), Expect = 8.6
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 6/72 (8%)
Query: 5 TLLASTLVTTAITIIGCSLVEDNRIESLRMVKEAKMEVLEAHKLAKEYVEQANQRVKEAE 64
TL T + + G + +R E L + A +E H LAK V A ++
Sbjct: 287 TLTQGKPTVTDVHVFG----DRDRTELLALA--AALEAGSEHPLAKAIVSYAKEKGITLV 340
Query: 65 EQSNARLLKGLG 76
E S+ + + G+G
Sbjct: 341 EVSDFKAIPGIG 352
>gnl|CDD|181923 PRK09513, fruK, 1-phosphofructokinase; Provisional.
Length = 312
Score = 24.3 bits (53), Expect = 8.8
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 69 ARLLKGLGMDDLVRYFMNLDSQN--QAFFIDT-IQNKYQ 104
A++LK LG+D V F+ D+Q+ Q F + I N++Q
Sbjct: 46 AKVLKDLGIDVTVGGFLGKDNQDGFQQLFSELGIANRFQ 84
>gnl|CDD|179583 PRK03482, PRK03482, phosphoglycerate mutase; Provisional.
Length = 215
Score = 24.3 bits (53), Expect = 9.0
Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 17/90 (18%)
Query: 2 RAKTL-----LASTLVTTAIT--II----GCSLVEDNRIESLRMVKEAKMEVLEAHKLAK 50
RAK L ++S L T T II GC ++ D R+ +E M VLE +
Sbjct: 42 RAKELGITHIISSDLGRTRRTAEIIAQACGCDIIFDPRL------RELNMGVLEKRHIDS 95
Query: 51 EYVEQANQRVKEAEEQSNARLLKGLGMDDL 80
E+ R + + R+ +G M +L
Sbjct: 96 LTEEEEGWRRQLVNGTVDGRIPEGESMQEL 125
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.314 0.129 0.334
Gapped
Lambda K H
0.267 0.0710 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 1,781,557
Number of extensions: 101228
Number of successful extensions: 435
Number of sequences better than 10.0: 1
Number of HSP's gapped: 432
Number of HSP's successfully gapped: 83
Length of query: 120
Length of database: 5,994,473
Length adjustment: 81
Effective length of query: 39
Effective length of database: 4,244,225
Effective search space: 165524775
Effective search space used: 165524775
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.5 bits)