RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780556|ref|YP_003064969.1| hypothetical protein CLIBASIA_02215 [Candidatus Liberibacter asiaticus str. psy62] (120 letters) >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 34.1 bits (78), Expect = 0.008 Identities = 22/117 (18%), Positives = 35/117 (29%), Gaps = 28/117 (23%) Query: 26 DNRIESL--RMVKEAKMEVLEAHKLAKEY---VEQANQRVK--------EAEEQSNARLL 72 N I +L ++++E +++ +L K Y A + A + NA+L+ Sbjct: 98 GNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLV 157 Query: 73 K---GLGMDDLVRYFMNL-DSQN--QAF---FIDTIQNKYQDEMEELSEFGEKVSDY 120 G G D YF L D I EL Sbjct: 158 AIFGGQGNTD--DYFEELRDLYQTYHVLVGDLIKFSAETLS----ELIRTTLDAEKV 208 >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Score = 30.3 bits (67), Expect = 0.12 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 14/56 (25%) Query: 30 ESLRMVKEAKMEVLE----AHKL--------AKEYVEQANQRVKEAEEQS--NARL 71 ES+R +E + + L+ A K+ AK+ +E+ NQR E E++ N R+ Sbjct: 85 ESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRI 140 >1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A* Length = 246 Score = 26.9 bits (59), Expect = 1.1 Identities = 13/60 (21%), Positives = 31/60 (51%), Gaps = 5/60 (8%) Query: 11 LVTTAITIIGCSLVEDNRIESLRM----VKEAKMEVLEAHKLAKEYVEQANQRVKEAEEQ 66 + + +G S+ + E++ + V + + + +L K YVE+AN+R++E ++ Sbjct: 188 AMVLGLVAMGLSIESELVPENIEVGYVKVDDRTFKEVSPEEL-KPYVERANERIRELLKK 246 >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A Length = 297 Score = 26.2 bits (56), Expect = 1.8 Identities = 6/27 (22%), Positives = 10/27 (37%) Query: 48 LAKEYVEQANQRVKEAEEQSNARLLKG 74 L Y + A +R + +L G Sbjct: 265 LVPRYAQLAKERFAREVPGFSLEVLDG 291 >3h74_A Pyridoxal kinase; PSI-II, structural genomics, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.30A {Lactobacillus plantarum} PDB: 3hyo_A* 3ibq_A* Length = 282 Score = 25.9 bits (56), Expect = 2.1 Identities = 9/49 (18%), Positives = 21/49 (42%), Gaps = 3/49 (6%) Query: 40 MEVLEAHKLAKEYVEQANQRVKEAEEQSNARLLKGLGMDDLVRYFMNLD 88 + A +++ A V E Q+ +G+ + DL++ + L+ Sbjct: 229 YPLAPTLARANQWLNMA---VAETIAQNRTDDRQGVALGDLLQAILALN 274 >1f32_A Major pepsin inhibitor PI-3; proteinase inhibitor, hydrolase inhibitor; 1.75A {Ascaris suum} SCOP: d.62.1.1 PDB: 1f34_B* Length = 149 Score = 25.3 bits (55), Expect = 3.7 Identities = 21/114 (18%), Positives = 37/114 (32%), Gaps = 17/114 (14%) Query: 17 TIIGCSLVEDNRI--ESLRMVKEAKMEVLEAHKLAKEYVEQANQRVKEAEEQSNARLLKG 74 T V+DN++ +L ++ + A VE VK + + Sbjct: 8 TGPFICTVKDNQVFVANLPWTMLEGDDIQVGKEFAA-RVEDCTN-VKHDMAPTCTKPPPF 65 Query: 75 LGMDDLVRYFMNLDS---QNQAFFIDTIQNKY-----QDEMEELSEFGEKVSDY 120 G D+ + FID KY + E+ F EK++ + Sbjct: 66 CGPQDMKMFN--FVGCSVLGNKLFID---QKYVRDLTAKDHAEVQTFREKIAAF 114 >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 1688 Score = 25.2 bits (54), Expect = 3.9 Identities = 15/59 (25%), Positives = 22/59 (37%), Gaps = 18/59 (30%) Query: 51 EYVEQANQRVKEAEEQSNARLLKGLGMDDLVRYFMNLDSQNQAFFIDTIQNKYQDEMEE 109 EYV + + R K A ++F N N+ F+ Y DE+EE Sbjct: 1473 EYVAKVSAREKSA-----------------YKFFHNGMIYNK-LFVSKEHAPYTDELEE 1513 >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 Length = 260 Score = 24.9 bits (53), Expect = 4.4 Identities = 7/17 (41%), Positives = 10/17 (58%) Query: 48 LAKEYVEQANQRVKEAE 64 + EYV QAN + + E Sbjct: 242 MNAEYVNQANFVLNQLE 258 >2c5u_A RNA ligase, T4 RNA ligase 1; nucleotidyl transferase, ATP-binding; HET: APC; 2.21A {Bacteriophage T4} Length = 375 Score = 25.0 bits (54), Expect = 5.0 Identities = 8/68 (11%), Positives = 19/68 (27%), Gaps = 2/68 (2%) Query: 50 KEYVEQANQRVKEAEEQSNARLLKGLGMDDLVRYFMNLDSQNQAFFIDTIQNKYQDEMEE 109 YV + + + + + DDL + D + I+ + Y ++ Sbjct: 245 DWYVSLHSTKSSLDNPEKLFKTIIDGASDDLKAMY--ADDEYSYRKIEAFETTYLKYLDR 302 Query: 110 LSEFGEKV 117 Sbjct: 303 ALFLVLDC 310 >1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A* Length = 412 Score = 24.6 bits (52), Expect = 6.4 Identities = 7/34 (20%), Positives = 15/34 (44%) Query: 19 IGCSLVEDNRIESLRMVKEAKMEVLEAHKLAKEY 52 +G +D + L +V++ + + L EY Sbjct: 37 VGAYRTDDCQPWVLPVVRKVEQRIANNSSLNHEY 70 >3cov_A Pantothenate synthetase; pantothenate biosynthesis, enzymes, ligase, drug design, ATP-binding, cytoplasm, magnesium, metal-binding; 1.50A {Mycobacterium tuberculosis} SCOP: c.26.1.4 PDB: 3cow_A* 3coy_A* 3coz_A* 3imc_A* 3ime_A* 3img_A* 3iub_A* 3iue_A* 3ivc_A* 3ivg_A* 3ivx_A* 2a84_A* 1n2b_A* 1n2e_A* 1n2g_A* 1n2h_A* 1n2i_A* 1n2j_A* 1n2o_A 2a7x_A* ... Length = 301 Score = 24.0 bits (51), Expect = 8.1 Identities = 8/38 (21%), Positives = 17/38 (44%) Query: 35 VKEAKMEVLEAHKLAKEYVEQANQRVKEAEEQSNARLL 72 + A+ + A +A +Y+E + + + RLL Sbjct: 233 LDAARAVLDAAPGVAVDYLELRDIGLGPMPLNGSGRLL 270 >2z0j_A Putative uncharacterized protein TTHA1438; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: MES; 1.50A {Thermus thermophilus HB8} Length = 237 Score = 24.1 bits (52), Expect = 8.7 Identities = 7/59 (11%), Positives = 21/59 (35%) Query: 33 RMVKEAKMEVLEAHKLAKEYVEQANQRVKEAEEQSNARLLKGLGMDDLVRYFMNLDSQN 91 + ++E + ++A ++ + A LK +G++ V + + Sbjct: 161 YLGFLGEVEPEDGARVALAVKRAYPDPLEALSLSAAALALKQVGLEADVPFCAQVAKSA 219 >3iyd_A DNA-directed RNA polymerase subunit alpha; transcription, initiation, class I, activator, RNA polymerase, holoenzyme, sigma70, open complex, CAP, CRP, CAMP-dependent; HET: DNA CMP; 19.80A {Escherichia coli k-12} Length = 329 Score = 23.8 bits (51), Expect = 9.8 Identities = 11/63 (17%), Positives = 25/63 (39%) Query: 54 EQANQRVKEAEEQSNARLLKGLGMDDLVRYFMNLDSQNQAFFIDTIQNKYQDEMEELSEF 113 + VKE + + + LL+ + +L N +I + + + E+ + Sbjct: 236 DVRQPEVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNL 295 Query: 114 GEK 116 G+K Sbjct: 296 GKK 298 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.314 0.129 0.334 Gapped Lambda K H 0.267 0.0521 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 879,508 Number of extensions: 35652 Number of successful extensions: 247 Number of sequences better than 10.0: 1 Number of HSP's gapped: 244 Number of HSP's successfully gapped: 60 Length of query: 120 Length of database: 5,693,230 Length adjustment: 81 Effective length of query: 39 Effective length of database: 3,729,466 Effective search space: 145449174 Effective search space used: 145449174 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 50 (23.5 bits)