RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780556|ref|YP_003064969.1| hypothetical protein
CLIBASIA_02215 [Candidatus Liberibacter asiaticus str. psy62]
(120 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 34.1 bits (78), Expect = 0.008
Identities = 22/117 (18%), Positives = 35/117 (29%), Gaps = 28/117 (23%)
Query: 26 DNRIESL--RMVKEAKMEVLEAHKLAKEY---VEQANQRVK--------EAEEQSNARLL 72
N I +L ++++E +++ +L K Y A + A + NA+L+
Sbjct: 98 GNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLV 157
Query: 73 K---GLGMDDLVRYFMNL-DSQN--QAF---FIDTIQNKYQDEMEELSEFGEKVSDY 120
G G D YF L D I EL
Sbjct: 158 AIFGGQGNTD--DYFEELRDLYQTYHVLVGDLIKFSAETLS----ELIRTTLDAEKV 208
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.3 bits (67), Expect = 0.12
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 14/56 (25%)
Query: 30 ESLRMVKEAKMEVLE----AHKL--------AKEYVEQANQRVKEAEEQS--NARL 71
ES+R +E + + L+ A K+ AK+ +E+ NQR E E++ N R+
Sbjct: 85 ESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRI 140
>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A
{Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*
Length = 246
Score = 26.9 bits (59), Expect = 1.1
Identities = 13/60 (21%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Query: 11 LVTTAITIIGCSLVEDNRIESLRM----VKEAKMEVLEAHKLAKEYVEQANQRVKEAEEQ 66
+ + +G S+ + E++ + V + + + +L K YVE+AN+R++E ++
Sbjct: 188 AMVLGLVAMGLSIESELVPENIEVGYVKVDDRTFKEVSPEEL-KPYVERANERIRELLKK 246
>2zig_A TTHA0409, putative modification methylase; methyltransferase, S-
adenosylmethionine, structural genomics, NPPSFA; 2.10A
{Thermus thermophilus} PDB: 2zie_A* 2zif_A
Length = 297
Score = 26.2 bits (56), Expect = 1.8
Identities = 6/27 (22%), Positives = 10/27 (37%)
Query: 48 LAKEYVEQANQRVKEAEEQSNARLLKG 74
L Y + A +R + +L G
Sbjct: 265 LVPRYAQLAKERFAREVPGFSLEVLDG 291
>3h74_A Pyridoxal kinase; PSI-II, structural genomics, protein structure
initiative, NEW YORK SGX research center for structural
genomics; 1.30A {Lactobacillus plantarum} PDB: 3hyo_A*
3ibq_A*
Length = 282
Score = 25.9 bits (56), Expect = 2.1
Identities = 9/49 (18%), Positives = 21/49 (42%), Gaps = 3/49 (6%)
Query: 40 MEVLEAHKLAKEYVEQANQRVKEAEEQSNARLLKGLGMDDLVRYFMNLD 88
+ A +++ A V E Q+ +G+ + DL++ + L+
Sbjct: 229 YPLAPTLARANQWLNMA---VAETIAQNRTDDRQGVALGDLLQAILALN 274
>1f32_A Major pepsin inhibitor PI-3; proteinase inhibitor, hydrolase
inhibitor; 1.75A {Ascaris suum} SCOP: d.62.1.1 PDB:
1f34_B*
Length = 149
Score = 25.3 bits (55), Expect = 3.7
Identities = 21/114 (18%), Positives = 37/114 (32%), Gaps = 17/114 (14%)
Query: 17 TIIGCSLVEDNRI--ESLRMVKEAKMEVLEAHKLAKEYVEQANQRVKEAEEQSNARLLKG 74
T V+DN++ +L ++ + A VE VK + +
Sbjct: 8 TGPFICTVKDNQVFVANLPWTMLEGDDIQVGKEFAA-RVEDCTN-VKHDMAPTCTKPPPF 65
Query: 75 LGMDDLVRYFMNLDS---QNQAFFIDTIQNKY-----QDEMEELSEFGEKVSDY 120
G D+ + FID KY + E+ F EK++ +
Sbjct: 66 CGPQDMKMFN--FVGCSVLGNKLFID---QKYVRDLTAKDHAEVQTFREKIAAF 114
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl
reductase, beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 25.2 bits (54), Expect = 3.9
Identities = 15/59 (25%), Positives = 22/59 (37%), Gaps = 18/59 (30%)
Query: 51 EYVEQANQRVKEAEEQSNARLLKGLGMDDLVRYFMNLDSQNQAFFIDTIQNKYQDEMEE 109
EYV + + R K A ++F N N+ F+ Y DE+EE
Sbjct: 1473 EYVAKVSAREKSA-----------------YKFFHNGMIYNK-LFVSKEHAPYTDELEE 1513
>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA
methylation, S- adenosylmethionine, PSI, protein
structure initiative; HET: SAM; 1.74A {Moraxella bovis}
SCOP: c.66.1.11
Length = 260
Score = 24.9 bits (53), Expect = 4.4
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 48 LAKEYVEQANQRVKEAE 64
+ EYV QAN + + E
Sbjct: 242 MNAEYVNQANFVLNQLE 258
>2c5u_A RNA ligase, T4 RNA ligase 1; nucleotidyl transferase, ATP-binding;
HET: APC; 2.21A {Bacteriophage T4}
Length = 375
Score = 25.0 bits (54), Expect = 5.0
Identities = 8/68 (11%), Positives = 19/68 (27%), Gaps = 2/68 (2%)
Query: 50 KEYVEQANQRVKEAEEQSNARLLKGLGMDDLVRYFMNLDSQNQAFFIDTIQNKYQDEMEE 109
YV + + + + + DDL + D + I+ + Y ++
Sbjct: 245 DWYVSLHSTKSSLDNPEKLFKTIIDGASDDLKAMY--ADDEYSYRKIEAFETTYLKYLDR 302
Query: 110 LSEFGEKV 117
Sbjct: 303 ALFLVLDC 310
>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand
2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa}
SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*
Length = 412
Score = 24.6 bits (52), Expect = 6.4
Identities = 7/34 (20%), Positives = 15/34 (44%)
Query: 19 IGCSLVEDNRIESLRMVKEAKMEVLEAHKLAKEY 52
+G +D + L +V++ + + L EY
Sbjct: 37 VGAYRTDDCQPWVLPVVRKVEQRIANNSSLNHEY 70
>3cov_A Pantothenate synthetase; pantothenate biosynthesis, enzymes,
ligase, drug design, ATP-binding, cytoplasm, magnesium,
metal-binding; 1.50A {Mycobacterium tuberculosis} SCOP:
c.26.1.4 PDB: 3cow_A* 3coy_A* 3coz_A* 3imc_A* 3ime_A*
3img_A* 3iub_A* 3iue_A* 3ivc_A* 3ivg_A* 3ivx_A* 2a84_A*
1n2b_A* 1n2e_A* 1n2g_A* 1n2h_A* 1n2i_A* 1n2j_A* 1n2o_A
2a7x_A* ...
Length = 301
Score = 24.0 bits (51), Expect = 8.1
Identities = 8/38 (21%), Positives = 17/38 (44%)
Query: 35 VKEAKMEVLEAHKLAKEYVEQANQRVKEAEEQSNARLL 72
+ A+ + A +A +Y+E + + + RLL
Sbjct: 233 LDAARAVLDAAPGVAVDYLELRDIGLGPMPLNGSGRLL 270
>2z0j_A Putative uncharacterized protein TTHA1438; uncharacterized
conserved protein, structural genomics, unknown
function, NPPSFA; HET: MES; 1.50A {Thermus thermophilus
HB8}
Length = 237
Score = 24.1 bits (52), Expect = 8.7
Identities = 7/59 (11%), Positives = 21/59 (35%)
Query: 33 RMVKEAKMEVLEAHKLAKEYVEQANQRVKEAEEQSNARLLKGLGMDDLVRYFMNLDSQN 91
+ ++E + ++A ++ + A LK +G++ V + +
Sbjct: 161 YLGFLGEVEPEDGARVALAVKRAYPDPLEALSLSAAALALKQVGLEADVPFCAQVAKSA 219
>3iyd_A DNA-directed RNA polymerase subunit alpha; transcription,
initiation, class I, activator, RNA polymerase,
holoenzyme, sigma70, open complex, CAP, CRP,
CAMP-dependent; HET: DNA CMP; 19.80A {Escherichia coli
k-12}
Length = 329
Score = 23.8 bits (51), Expect = 9.8
Identities = 11/63 (17%), Positives = 25/63 (39%)
Query: 54 EQANQRVKEAEEQSNARLLKGLGMDDLVRYFMNLDSQNQAFFIDTIQNKYQDEMEELSEF 113
+ VKE + + + LL+ + +L N +I + + + E+ +
Sbjct: 236 DVRQPEVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNL 295
Query: 114 GEK 116
G+K
Sbjct: 296 GKK 298
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.314 0.129 0.334
Gapped
Lambda K H
0.267 0.0521 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 879,508
Number of extensions: 35652
Number of successful extensions: 247
Number of sequences better than 10.0: 1
Number of HSP's gapped: 244
Number of HSP's successfully gapped: 60
Length of query: 120
Length of database: 5,693,230
Length adjustment: 81
Effective length of query: 39
Effective length of database: 3,729,466
Effective search space: 145449174
Effective search space used: 145449174
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.5 bits)