RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254780556|ref|YP_003064969.1| hypothetical protein
CLIBASIA_02215 [Candidatus Liberibacter asiaticus str. psy62]
(120 letters)
>d1j2pa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 243
Score = 28.1 bits (62), Expect = 0.26
Identities = 13/60 (21%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Query: 11 LVTTAITIIGCSLVEDNRIESLRM----VKEAKMEVLEAHKLAKEYVEQANQRVKEAEEQ 66
+ + +G S+ + E++ + V + + + +L K YVE+AN+R++E ++
Sbjct: 185 AMVLGLVAMGLSIESELVPENIEVGYVKVDDRTFKEVSPEEL-KPYVERANERIRELLKK 243
>d3ejna1 a.118.8.6 (A:32-490) Uncharacterized protein BF3025
{Bacteroides fragilis [TaxId: 817]}
Length = 459
Score = 24.6 bits (52), Expect = 2.4
Identities = 9/75 (12%), Positives = 22/75 (29%), Gaps = 15/75 (20%)
Query: 53 VEQANQRVKEAEEQSN------ARLLKGLGMDDLVRYF---------MNLDSQNQAFFID 97
+ + +EAE + + + +L F + D
Sbjct: 54 LRNVQKMGEEAERVNAPVYTALTKFFRAYYFYELTLRFGDIPYSQALKGEKEEIYTPEYD 113
Query: 98 TIQNKYQDEMEELSE 112
++ + ++EL E
Sbjct: 114 AQEDVFAGILQELRE 128
>d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus
scrofa), cytosolic form [TaxId: 9823]}
Length = 412
Score = 24.5 bits (52), Expect = 2.5
Identities = 7/34 (20%), Positives = 15/34 (44%)
Query: 19 IGCSLVEDNRIESLRMVKEAKMEVLEAHKLAKEY 52
+G +D + L +V++ + + L EY
Sbjct: 37 VGAYRTDDCQPWVLPVVRKVEQRIANNSSLNHEY 70
>d1vr0a1 c.148.1.1 (A:1-235) 2-phosphosulfolactate phosphatase ComB
{Clostridium acetobutylicum [TaxId: 1488]}
Length = 235
Score = 24.1 bits (52), Expect = 3.8
Identities = 10/63 (15%), Positives = 22/63 (34%)
Query: 29 IESLRMVKEAKMEVLEAHKLAKEYVEQANQRVKEAEEQSNARLLKGLGMDDLVRYFMNLD 88
I + M + K+E+ +A A+ + + + + + LG+ Y D
Sbjct: 162 IINCVMDRMKKLELTDAATTAQYVYKTNEDIKGFVKYAKHYKRIMELGLKKDFEYCCKKD 221
Query: 89 SQN 91
Sbjct: 222 IVK 224
>d1jxha_ c.72.1.2 (A:) 4-amino-5-hydroxymethyl-2-methylpyrimidine
phosphate kinase (HMP-phosphate kinase, ThiD)
{Salmonella typhimurium [TaxId: 90371]}
Length = 266
Score = 23.6 bits (50), Expect = 4.5
Identities = 4/17 (23%), Positives = 6/17 (35%)
Query: 40 MEVLEAHKLAKEYVEQA 56
E AK ++ A
Sbjct: 227 RSWGETVNEAKAWLSAA 243
>d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's
yeast (Saccharomyces cerevisiae), cytosolic form
[TaxId: 4932]}
Length = 412
Score = 23.4 bits (49), Expect = 5.9
Identities = 8/34 (23%), Positives = 13/34 (38%)
Query: 19 IGCSLVEDNRIESLRMVKEAKMEVLEAHKLAKEY 52
IG ++ + L VK A+ + EY
Sbjct: 36 IGAYRDDNGKPWVLPSVKAAEKLIHNDSSYNHEY 69
>d2a84a1 c.26.1.4 (A:3-288) Pantothenate synthetase
(Pantoate-beta-alanine ligase, PanC) {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 286
Score = 23.2 bits (49), Expect = 6.5
Identities = 8/39 (20%), Positives = 17/39 (43%)
Query: 34 MVKEAKMEVLEAHKLAKEYVEQANQRVKEAEEQSNARLL 72
+ A+ + A +A +Y+E + + + RLL
Sbjct: 229 ALDAARAVLDAAPGVAVDYLELRDIGLGPMPLNGSGRLL 267
>d1kcxa1 b.92.1.3 (A:15-66,A:401-490) Dihydropyrimidinase related
protein-1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 142
Score = 23.3 bits (50), Expect = 6.7
Identities = 5/40 (12%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Query: 10 TLVTTAITIIGCSLVEDNRIESL--RMVKEAKMEVLEAHK 47
++ + +ED I+ + ++ ++ +EA+
Sbjct: 9 RIINDDQSFYADVYLEDGLIKQIGENLIVPGGVKTIEANG 48
>d2cdqa1 c.73.1.3 (A:25-328) Aspartokinase {Thale cress (Arabidopsis
thaliana) [TaxId: 3702]}
Length = 304
Score = 22.9 bits (48), Expect = 7.4
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 3/35 (8%)
Query: 83 YFMNLDSQNQAFFIDTIQNKYQDEMEELSEFGEKV 117
+ +A + + + DE EL+ FG +V
Sbjct: 235 LTCDPTIYKRATPVPYLT--F-DEAAELAYFGAQV 266
>d1ls1a1 a.24.13.1 (A:1-88) Signal sequence recognition protein
Ffh {Thermus aquaticus [TaxId: 271]}
Length = 88
Score = 23.1 bits (50), Expect = 7.5
Identities = 8/43 (18%), Positives = 23/43 (53%)
Query: 22 SLVEDNRIESLRMVKEAKMEVLEAHKLAKEYVEQANQRVKEAE 64
+ E++ +LR ++ A M+ ++A+++VE+ + +
Sbjct: 21 RITEEDLKATLREIRRALMDADVNLEVARDFVERVREEALGKQ 63
>d2j0wa1 c.73.1.3 (A:3-294) Aspartokinase {Escherichia coli [TaxId:
562]}
Length = 292
Score = 22.9 bits (48), Expect = 8.1
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 105 DEMEELSEFGEKV 117
E E++ FG KV
Sbjct: 244 AEAAEMATFGAKV 256
>d2c42a2 c.36.1.12 (A:786-1232) Pyruvate-ferredoxin oxidoreductase,
PFOR, domains VI {Desulfovibrio africanus [TaxId: 873]}
Length = 447
Score = 22.6 bits (48), Expect = 8.9
Identities = 6/39 (15%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 48 LAKEYVEQANQRVKEAEEQSNAR--LLKGLGMDDLVRYF 84
L + + E A + + + + R L+ + ++ F
Sbjct: 352 LDRSFPEDAKRLRAQVAHELDVRFKELEHMAATNIFESF 390
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.129 0.334
Gapped
Lambda K H
0.267 0.0422 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 381,019
Number of extensions: 15042
Number of successful extensions: 83
Number of sequences better than 10.0: 1
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 27
Length of query: 120
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 46
Effective length of database: 1,391,576
Effective search space: 64012496
Effective search space used: 64012496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)