BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780556|ref|YP_003064969.1| hypothetical protein
CLIBASIA_02215 [Candidatus Liberibacter asiaticus str. psy62]
(120 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780556|ref|YP_003064969.1| hypothetical protein CLIBASIA_02215 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 120
Score = 244 bits (623), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 120/120 (100%), Positives = 120/120 (100%)
Query: 1 MRAKTLLASTLVTTAITIIGCSLVEDNRIESLRMVKEAKMEVLEAHKLAKEYVEQANQRV 60
MRAKTLLASTLVTTAITIIGCSLVEDNRIESLRMVKEAKMEVLEAHKLAKEYVEQANQRV
Sbjct: 1 MRAKTLLASTLVTTAITIIGCSLVEDNRIESLRMVKEAKMEVLEAHKLAKEYVEQANQRV 60
Query: 61 KEAEEQSNARLLKGLGMDDLVRYFMNLDSQNQAFFIDTIQNKYQDEMEELSEFGEKVSDY 120
KEAEEQSNARLLKGLGMDDLVRYFMNLDSQNQAFFIDTIQNKYQDEMEELSEFGEKVSDY
Sbjct: 61 KEAEEQSNARLLKGLGMDDLVRYFMNLDSQNQAFFIDTIQNKYQDEMEELSEFGEKVSDY 120
>gi|254780980|ref|YP_003065393.1| hypothetical protein CLIBASIA_04405 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 121
Score = 67.4 bits (163), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 66/108 (61%), Gaps = 10/108 (9%)
Query: 1 MRAKTLLASTLVTTAITIIGCSLV----ED--NRIE--SLRMVKEAKMEVLEAHKLAKEY 52
M+AK L+ S TT +TI GC +V ED N+++ S +M+KEA ++ E H+LA+E
Sbjct: 1 MKAKILMTSAFSTTLLTIGGCDIVIGRTEDLLNKLQKNSTQMIKEANFKISETHRLAQER 60
Query: 53 VEQANQRVKEAEEQSNARLLKGLGMDDLVRYFMNLDSQNQAFFIDTIQ 100
VE A +RVKE EE++ A + L +D+L F +L +++ F ++
Sbjct: 61 VEAAEKRVKEVEERATAS--RKLSVDELANAFWDLSDEDKNAFTGNVK 106
>gi|254780978|ref|YP_003065391.1| aspartyl/glutamyl-tRNA amidotransferase subunit A [Candidatus
Liberibacter asiaticus str. psy62]
Length = 493
Score = 25.4 bits (54), Expect = 0.36, Method: Composition-based stats.
Identities = 11/50 (22%), Positives = 24/50 (48%)
Query: 29 IESLRMVKEAKMEVLEAHKLAKEYVEQANQRVKEAEEQSNARLLKGLGMD 78
I ++ +V + ++ Y+E Q+ + A E+S+ R++ G D
Sbjct: 21 ISAVELVDSYIQAIENSNSQMNAYIEVVAQKARAAAEESDKRIINGDARD 70
>gi|254780752|ref|YP_003065165.1| penicillin binding peptidoglycan synthetase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 817
Score = 22.7 bits (47), Expect = 2.0, Method: Composition-based stats.
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 84 FMNLDSQNQAFFIDTIQNKY 103
F N Q + FID IQN+Y
Sbjct: 591 FANGGKQIRPSFIDRIQNRY 610
>gi|254780502|ref|YP_003064915.1| ribonucleotide-diphosphate reductase subunit alpha [Candidatus
Liberibacter asiaticus str. psy62]
Length = 954
Score = 22.7 bits (47), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 6/40 (15%)
Query: 46 HKLAKEYV----EQANQRVKEAEEQSNARLLKGLG--MDD 79
HK+ +EYV E+++ R ++ +S+A + L MDD
Sbjct: 112 HKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMDD 151
>gi|254781144|ref|YP_003065557.1| hypothetical protein CLIBASIA_05240 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 76
Score = 22.3 bits (46), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 69 ARLLKGLGMDDLVRYFMNLDSQ 90
ARL + +G+ ++ YF N DS+
Sbjct: 52 ARLAEAVGVQNVNEYFNNPDSE 73
>gi|254780867|ref|YP_003065280.1| NADH dehydrogenase subunit N [Candidatus Liberibacter asiaticus
str. psy62]
Length = 478
Score = 21.9 bits (45), Expect = 3.7, Method: Composition-based stats.
Identities = 10/38 (26%), Positives = 22/38 (57%), Gaps = 6/38 (15%)
Query: 71 LLKGLGM------DDLVRYFMNLDSQNQAFFIDTIQNK 102
L+ LGM +D++ ++M+L+ Q+ A ++ N+
Sbjct: 113 LMAVLGMLCMISANDMISFYMSLELQSFALYVLIAMNR 150
>gi|254780567|ref|YP_003064980.1| hypothetical protein CLIBASIA_02270 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 246
Score = 21.9 bits (45), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 15 AITIIGCSLVEDNRIESLRMVKEAKMEVLEAHKLAKEYVEQANQRVKEAE----EQSNAR 70
A T++ SL +D+ +E + + A ++ KLA V++ + + AE + N
Sbjct: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
Query: 71 LLKGLGM 77
L +G+G+
Sbjct: 224 LSRGMGI 230
>gi|254781003|ref|YP_003065416.1| hypothetical protein CLIBASIA_04520 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 304
Score = 21.2 bits (43), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 10/35 (28%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 87 LDSQNQAF-FIDTIQNKYQDEMEELSEFGEKVSDY 120
LD ++F F+D+++N Y LS+ + + D+
Sbjct: 160 LDIHLKSFCFLDSLENTYSPSCSLLSQQAQWLKDW 194
>gi|254780802|ref|YP_003065215.1| leucyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 869
Score = 21.2 bits (43), Expect = 5.6, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 92 QAFF-IDTIQNKYQDEMEELSEFGEKV 117
Q FF I + + D +E LSE+ EKV
Sbjct: 191 QWFFKISDLSQELLDSIETLSEWPEKV 217
>gi|254781225|ref|YP_003065638.1| P4 family phage/plasmid primase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 789
Score = 20.4 bits (41), Expect = 9.8, Method: Composition-based stats.
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 44 EAHKLAKEYVEQANQRVKEAEEQSNAR 70
E+H LAK Y E Q + ++ + R
Sbjct: 710 ESHSLAKSYSEYREQELNYDRKRISTR 736
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.314 0.129 0.334
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,081
Number of Sequences: 1233
Number of extensions: 2135
Number of successful extensions: 23
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 20
length of query: 120
length of database: 328,796
effective HSP length: 64
effective length of query: 56
effective length of database: 249,884
effective search space: 13993504
effective search space used: 13993504
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 33 (17.3 bits)