RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780557|ref|YP_003064970.1| dinucleoside polyphosphate
hydrolase [Candidatus Liberibacter asiaticus str. psy62]
(160 letters)
>gnl|CDD|179094 PRK00714, PRK00714, RNA pyrophosphohydrolase; Reviewed.
Length = 156
Score = 185 bits (472), Expect = 5e-48
Identities = 66/158 (41%), Positives = 92/158 (58%), Gaps = 12/158 (7%)
Query: 2 YRRGVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGI 61
YR VGI++LN+ V+ GRR WQ PQGGI+P E P A YRELYEE G+
Sbjct: 7 YRPNVGIILLNRQGQVFWGRR-----IGQGHSWQFPQGGIDPGETPEQAMYRELYEEVGL 61
Query: 62 KS--ISLLGQGDSYIQYDFPAHCI--QENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYE 117
+ + +L + +++YD P + + Y GQ QKWF R G SEI ++ T++
Sbjct: 62 RPEDVEILAETRDWLRYDLPKRLVRRSKGVYRGQKQKWFLLRLTGDDSEINLNTTSHP-- 119
Query: 118 SEFDAWTWVSLWDTPNIVVDFKKEAYRQVVADFAYLIK 155
EFDAW WVS W + VV FK++ YR+V+ +FA L+
Sbjct: 120 -EFDAWRWVSYWYPLDQVVPFKRDVYRRVLKEFARLLM 156
>gnl|CDD|180046 PRK05379, PRK05379, bifunctional nicotinamide mononucleotide
adenylyltransferase/ADP-ribose pyrophosphatase;
Provisional.
Length = 340
Score = 40.4 bits (95), Expect = 2e-04
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 33 LWQMPQGGINPQEDPLDAAYRELYEETGIK 62
LW +P G + E LDA REL EETG+K
Sbjct: 229 LWALPGGFLEQDETLLDACLRELREETGLK 258
>gnl|CDD|182721 PRK10776, PRK10776, nucleoside triphosphate pyrophosphohydrolase;
Provisional.
Length = 129
Score = 39.2 bits (92), Expect = 4e-04
Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 13/78 (16%)
Query: 6 VGILILNQDDLVWVGRRC--FHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGI-- 61
VGI I N ++ +++ RR H K W+ P G I E P A REL EE GI
Sbjct: 8 VGI-IRNPNNEIFITRRAADAHMAGK----WEFPGGKIEAGETPEQALIRELQEEVGITV 62
Query: 62 KSISLLGQGDSYIQYDFP 79
+ +L + ++Y+FP
Sbjct: 63 QHATLFEK----LEYEFP 76
>gnl|CDD|181607 PRK08999, PRK08999, hypothetical protein; Provisional.
Length = 312
Score = 39.1 bits (92), Expect = 6e-04
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 9 LILNQDDLVWVGRRCFHDNNKHLS-LWQMPQGGINPQEDPLDAAYRELYEETGI 61
+I + D + + RR KH LW+ P G + P E A REL EE GI
Sbjct: 11 VIRDADGRILLARRPEG---KHQGGLWEFPGGKVEPGETVEQALARELQEELGI 61
>gnl|CDD|131752 TIGR02705, nudix_YtkD, nucleoside triphosphatase YtkD. The
functional assignment to the proteins of this family is
contentious. Reference challenges the findings of
reference, both in interpretation and in enzyme assay
results. This protein belongs to the nudix family and
shares some sequence identity with E. coli MutT but
appears not to be functionally interchangeable with it.
Length = 156
Score = 38.9 bits (91), Expect = 6e-04
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 37 PQGGINPQEDPLDAAYRELYEETG--IKSISLLGQ 69
P G + P E +AA RE+ EETG +K + +GQ
Sbjct: 50 PGGKVEPGETSKEAAIREVMEETGAIVKELHYIGQ 84
>gnl|CDD|181858 PRK09438, nudB, dihydroneopterin triphosphate pyrophosphatase;
Provisional.
Length = 148
Score = 37.6 bits (88), Expect = 0.002
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 34 WQMPQGGINPQEDPLDAAYRELYEETGI 61
WQ G + E P A RE+ EETGI
Sbjct: 33 WQSVTGSLEEGETPAQTAIREVKEETGI 60
>gnl|CDD|183303 PRK11762, nudE, adenosine nucleotide hydrolase NudE; Provisional.
Length = 185
Score = 36.3 bits (85), Expect = 0.004
Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 8/38 (21%)
Query: 37 PQGGINPQEDPLDAAYRELYEETG--------IKSISL 66
P+G I+P E PL+AA REL EE G +K +SL
Sbjct: 79 PKGLIDPGETPLEAANRELKEEVGFGARQLTFLKELSL 116
>gnl|CDD|177959 PLN02325, PLN02325, nudix hydrolase.
Length = 144
Score = 32.1 bits (73), Expect = 0.061
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 3 RRGVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGIK 62
R V + +L + V +GRR + S + +P G + E + A RE+ EETG++
Sbjct: 9 RVAVVVFLLK-GNSVLLGRRRSSIGD---STFALPGGHLEFGESFEECAAREVKEETGLE 64
>gnl|CDD|185291 PRK15393, PRK15393, NUDIX hydrolase YfcD; Provisional.
Length = 180
Score = 30.5 bits (69), Expect = 0.22
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 45 EDPLDAAYRELYEETGIKSISLLGQGDSY 73
E L++A RE EE GI + G Y
Sbjct: 79 EQLLESARREAEEELGIAGVPFAEHGQFY 107
>gnl|CDD|129674 TIGR00586, mutt, mutator mutT protein. All proteins in this
family for which functions are known are involved in
repairing oxidative damage to dGTP (they are
8-oxo-dGTPases). This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University).
Length = 128
Score = 30.2 bits (68), Expect = 0.26
Identities = 21/79 (26%), Positives = 30/79 (37%), Gaps = 6/79 (7%)
Query: 6 VGILILNQDDLVWVGRRCF-HDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGIKSI 64
+I N++ + + RR H K L + P G E P A REL EE GI
Sbjct: 7 AVGIIRNENGEIIITRRADGHMFAK---LLEFPGGKEEGGETPEQAVVRELEEEIGI--P 61
Query: 65 SLLGQGDSYIQYDFPAHCI 83
+ + +P H
Sbjct: 62 QHFSEFEKLEYEFYPRHIT 80
>gnl|CDD|182536 PRK10546, PRK10546, pyrimidine (deoxy)nucleoside triphosphate
pyrophosphohydrolase; Provisional.
Length = 135
Score = 29.3 bits (66), Expect = 0.41
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 33 LWQMPQGGINPQEDPLDAAYRELYEETGI 61
LW+ G + P E A REL EE GI
Sbjct: 31 LWEFAGGKVEPGESQPQALIRELREELGI 59
>gnl|CDD|185369 PRK15472, PRK15472, nucleoside triphosphatase NudI; Provisional.
Length = 141
Score = 28.9 bits (65), Expect = 0.56
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 34 WQMPQGGINPQEDPLDAAYRELYEETG 60
W + GG+ P E +A RE+ EE G
Sbjct: 33 WALSGGGVEPGERIEEALRREIREELG 59
>gnl|CDD|182753 PRK10814, PRK10814, outer membrane-specific lipoprotein transporter
subunit LolC; Provisional.
Length = 399
Score = 27.4 bits (61), Expect = 1.6
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 5/39 (12%)
Query: 37 PQGGINPQEDPLDAAYRELYEETGIKSISLLGQGDSYIQ 75
G +NPQ+ P A + G+ I+ L GD +Q
Sbjct: 71 EHGSLNPQQLPASALKLD-----GVNRIAPLTTGDVVLQ 104
>gnl|CDD|177797 PLN00207, PLN00207, polyribonucleotide nucleotidyltransferase;
Provisional.
Length = 891
Score = 27.6 bits (61), Expect = 1.7
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 73 YIQYDFPAHCIQENGYVG 90
Y+QY FP C+ E G +G
Sbjct: 502 YLQYSFPPSCVGEVGRIG 519
>gnl|CDD|182682 PRK10729, nudF, ADP-ribose pyrophosphatase NudF; Provisional.
Length = 202
Score = 26.2 bits (58), Expect = 3.5
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 33 LWQMPQGGINPQEDPLDAAYRELYEETGIK 62
L +M G I E D A RE EE G+
Sbjct: 83 LLEMVAGMIEEGESVEDVARREAIEEAGLI 112
>gnl|CDD|184631 PRK14335, PRK14335, (dimethylallyl)adenosine tRNA
methylthiotransferase; Provisional.
Length = 455
Score = 26.0 bits (57), Expect = 4.4
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
Query: 47 PLDAAYREL--YEETGIKSISLLGQG-DSY 73
LDA +E+ E G++ I+LLGQ +SY
Sbjct: 182 DLDAILQEIDVLSEKGVREITLLGQNVNSY 211
>gnl|CDD|180368 PRK06048, PRK06048, acetolactate synthase 3 catalytic subunit;
Reviewed.
Length = 561
Score = 25.5 bits (56), Expect = 6.2
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 6/82 (7%)
Query: 74 IQYDFPAH-CIQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEFDAWTWVSLWDT- 131
+Q D P I NGY+G +++W + S C+ + + + +A+ + L
Sbjct: 455 VQNDIPVIVAILNNGYLGMVRQWQELFYDKRYSHTCI-KGSVDFVKLAEAYGALGLRVEK 513
Query: 132 PNIVVDFKKEAY---RQVVADF 150
P+ V +EA R VV DF
Sbjct: 514 PSEVRPAIEEAVASDRPVVIDF 535
>gnl|CDD|152663 pfam12228, DUF3604, Protein of unknown function (DUF3604). This
family of proteins is found in bacteria. Proteins in
this family are typically between 621 and 693 amino
acids in length.
Length = 592
Score = 25.3 bits (56), Expect = 6.8
Identities = 8/51 (15%), Positives = 10/51 (19%), Gaps = 3/51 (5%)
Query: 76 YDFPAHCIQENGYVGQMQKWFAFR---FQGLTSEICVDRTAYGYESEFDAW 123
+ NG G E D G + AW
Sbjct: 86 TGQEWAELLRNGPEDAGTAAALLISAAAAGFLPEALRDPLDGGLDIARSAW 136
>gnl|CDD|129413 TIGR00313, cobQ, cobyric acid synthase CobQ.
Length = 475
Score = 25.1 bits (55), Expect = 7.5
Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 7/50 (14%)
Query: 44 QEDPLDAAYRELYEETGIKSISLLGQGDSYIQYDFPAH---CIQENGYVG 90
D L + +L E TGI + +L Y + FP IQE G
Sbjct: 198 NVDVLKSGIEKLEELTGIPVLGVL----PYDENLFPEEDSLVIQERRSRG 243
>gnl|CDD|179387 PRK02228, PRK02228, V-type ATP synthase subunit F; Provisional.
Length = 100
Score = 25.3 bits (56), Expect = 7.6
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 3 RRGVGILILNQDDL 16
VGIL+++ DDL
Sbjct: 42 DDDVGILVMHDDDL 55
>gnl|CDD|130609 TIGR01546, GAPDH-II_archae, glyceraldehyde-3-phosphate
dehydrogenase, type II. All of the members of the seed
are characterized. See, for instance. This model is very
solid, there are no species falling between trusted and
noise at this time. The closest relatives scoring in the
noise are the class I GAPDH's.
Length = 333
Score = 25.2 bits (55), Expect = 9.0
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 50 AAYRELYEETGIKSISLLGQGDSYIQYDFPAHC 82
A + LYE+ G+K+I G+ F A
Sbjct: 89 AKNKPLYEKAGVKAIFQGGEKAEVADVSFVAQA 121
>gnl|CDD|129162 TIGR00052, TIGR00052, nudix-type nucleoside diphosphatase,
YffH/AdpP family.
Length = 185
Score = 25.2 bits (55), Expect = 9.2
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 6/67 (8%)
Query: 1 MYRRGVGILIL----NQDDLVWVG--RRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRE 54
+Y RG +L +D +V + R + N + L ++ G + E P D A RE
Sbjct: 40 IYDRGNAAAVLLYDPKKDTVVLIEQFRIAAYVNGEEPWLLELSAGMVEKGESPEDVARRE 99
Query: 55 LYEETGI 61
EE G
Sbjct: 100 AIEEAGY 106
>gnl|CDD|162608 TIGR01928, menC_lowGC/arch, o-succinylbenzoic acid (OSB)
synthetase. This model describes the enzyme
o-succinylbenzoic acid synthetase (menC) that is
involved in one of the steps of the menaquinone
biosynthesis pathway. It takes SHCHC and makes it into
2-succinylbenzoate. Included in this model are low GC
gram positive bacteria and archaea. Also included in the
seed and in the model are enzymes with the com-name of
N-acylamino acid racemase (or the more general term,
racemase / racemase family), which refers to the
enzyme's industrial application as racemases, and not to
its biological function as o-succinylbenzoic acid
synthetase.
Length = 324
Score = 24.8 bits (54), Expect = 9.7
Identities = 9/46 (19%), Positives = 18/46 (39%), Gaps = 3/46 (6%)
Query: 114 YGYESEFDAWTWVSLWDTPNIVVDFKKEAYRQVVADFAYLIKSEPM 159
Y +E+ + + PNI +F+ + + +K PM
Sbjct: 48 YTHETIATVKHIIEDFFEPNINKEFE---HPSEALELVRSLKGTPM 90
>gnl|CDD|179786 PRK04207, PRK04207, glyceraldehyde-3-phosphate dehydrogenase;
Provisional.
Length = 341
Score = 24.8 bits (55), Expect = 9.8
Identities = 8/15 (53%), Positives = 12/15 (80%)
Query: 50 AAYRELYEETGIKSI 64
A +ELYE+ G+K+I
Sbjct: 92 AKNKELYEKAGVKAI 106
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.322 0.140 0.457
Gapped
Lambda K H
0.267 0.0731 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 2,763,450
Number of extensions: 162771
Number of successful extensions: 330
Number of sequences better than 10.0: 1
Number of HSP's gapped: 326
Number of HSP's successfully gapped: 33
Length of query: 160
Length of database: 5,994,473
Length adjustment: 86
Effective length of query: 74
Effective length of database: 4,136,185
Effective search space: 306077690
Effective search space used: 306077690
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.2 bits)