HHsearch alignment for GI: 254780558 and conserved domain: TIGR02764
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB; InterPro: IPR014132 This entry describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reduced sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterised polysaccharide deacetylase; the exact function this protein family is unknown..
Probab=96.07 E-value=0.099 Score=30.60 Aligned_cols=172 Identities=13% Similarity=0.085 Sum_probs=113.7
Q ss_pred EEEEEECCCCCCCHHHHHH---HHHCCCC-CEEEEE-CCCCCHHHHHHH---HHHCCCCEEEECCCCCCCCCCCCCCCCC
Q ss_conf 5899973778771688999---9837935-089870-898768999999---9985992999817665689877878554
Q gi|254780558|r 172 RIAIVVSGLGISQTGTQRA---INLLPAN-ITLAFA-SNGNSLDRWMKE---AKKKGQEAILQIPMQAFDESYNEDDSYT 243 (396)
Q Consensus 172 riAIVIddlG~~~~~~~~a---i~~LP~~-vT~A~~-P~~~~~~~~~~~---Ar~~G~EvllhlPMEp~~~~~~~pGp~~ 243 (396)
T Consensus 7 ~iAlTFDi-sWG~~~~~~IL~~L~~~~vk~ATFFlsG~Wae~hPelvk~lveI~~~GHEIGsH------gY~h~~----- 74 (198)
T TIGR02764 7 KIALTFDI-SWGNQYTEPILDTLKEEDVKNATFFLSGSWAERHPELVKELVEIVKDGHEIGSH------GYRHKN----- 74 (198)
T ss_pred CEEEEECC-CCCCCCCCHHHHHHHHCCCCCCCCEEEHHHHHCCHHHHHHHHHHHHCCCCCCCC------CCCCCC-----
T ss_conf 17884158-987443006766676558853330243157612778999999998448430335------421242-----
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEEECC----CCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCC
Q ss_conf 4678998999999999998558935980012----300004989999999998506928997497632267898987099
Q gi|254780558|r 244 LKVTQTVQQLLNRLRYSLRRGTGYFGVMNYR----GAMLLSNKESAEVIFKEFAKRGLLFFDDGSSPRNLTRVLAPKLNL 319 (396)
Q Consensus 244 L~~~~~~~~~~~~l~~~l~~~p~~vGvnNhm----Gs~~t~~~~~m~~vl~~l~~rgL~flDs~Ts~~Sva~~~A~~~gv 319 (396)
T Consensus 75 -~~~l~~E~ikkd~~~a~~~i~~~~g~~p~LlRpP~G~fn~------~~~~~ae~~GY~~V------------------- 128 (198)
T TIGR02764 75 -YTTLEDEKIKKDLLRAQEIIEKLTGKKPTLLRPPNGAFNK------AVLKLAESLGYTVV------------------- 128 (198)
T ss_pred -CCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCH------HHHHHHHHCCCCEE-------------------
T ss_conf -1258764899999998888865105550165688986046------89999997399189-------------------
Q ss_pred CEEEEE--EEE-C-CCCCHHHHHHHHHHHHHHHHHCCEEEEEEE-C---CHHHHHHHHHHHHHHHHCCCEEEEHHHHH
Q ss_conf 469845--886-2-899999999999999999987194899980-8---87889999999756887691899677743
Q gi|254780558|r 320 PYMVAD--LYL-D-DQVDRDKIREKLKGLEEIARTTGQAIGVAV-A---FDESIEVISQWLQQEHVRDVSVVPLSCLA 389 (396)
Q Consensus 320 p~~~~d--vfL-D-~~~~~~~I~~qL~~l~~~Ar~~G~AI~igh-~---~p~Ti~~L~~w~~~l~~~gi~lVpvS~l~ 389 (396)
T Consensus 129 ---~WsWHvdS~DWkNPG~e~iv~~V~~----~~~~G-dIiL~HDASd~~KqT~~ALp~Ii~~LK~~GY~fv~iseLi 198 (198)
T TIGR02764 129 ---HWSWHVDSLDWKNPGVESIVDRVVK----NTKPG-DIILLHDASDSAKQTVKALPEIIKKLKEKGYEFVTISELI 198 (198)
T ss_pred ---EEECCCCCCCCCCCCEEHHHHHHHC----CCCCC-CEEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEHHCCC
T ss_conf ---8624558835457861000111331----27998-5698763487974417789999899875495343422019