HHsearch alignment for GI: 254780558 and conserved domain: TIGR03212
>TIGR03212 uraD_N-term-dom putative urate catabolism protein. This model represents a protein that is predominantly found just upstream of the UraD protein (OHCU decarboxylase) and in a number of instances as a N-terminal fusion with it. UraD itself catalyzes the last step in the catabolism of urate to allantoate. The function of this protein is presently unknown. It shows homology with the pfam01522 polysaccharide deacetylase domain family.
Probab=95.76 E-value=0.085 Score=31.02 Aligned_cols=186 Identities=14% Similarity=0.108 Sum_probs=104.0
Q ss_pred HHHHHHHCCCCCEEEEECCC-CCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 89999837935089870898-76899999999859929998176656898778785544678998999999999998558
Q gi|254780558|r 187 TQRAINLLPANITLAFASNG-NSLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLKVTQTVQQLLNRLRYSLRRGT 265 (396)
Q Consensus 187 ~~~ai~~LP~~vT~A~~P~~-~~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~~~~~~~~~~~l~~~l~~~p 265 (396)
T Consensus 82 lL~ll~~~gi~aT~fv~g~~ae~~P~~~~~i~~~GhEi~~HG------y~~~~------~~~l~~~~E~~~i~~~~~~l~ 149 (297)
T TIGR03212 82 LLRLFTERGIPVTVFGVAMALARNPEAVAAMKEAGWEIASHG------LRWID------YQDMDEAQEREHIAEAIRLHT 149 (297)
T ss_pred HHHHHHHCCCCCEEEHHHHHHHHCHHHHHHHHHCCCCHHHHH------HHCCC------CCCCCHHHHHHHHHHHHHHHH
T ss_conf 999999759983685229999889999999997597377543------30337------666998999999999999999
Q ss_pred CCEEEEE--CCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHH----HHCCCEEE--EEE-EECC--CCC-
Q ss_conf 9359800--1230000498999999999850692899749763226789898----70994698--458-8628--999-
Q gi|254780558|r 266 GYFGVMN--YRGAMLLSNKESAEVIFKEFAKRGLLFFDDGSSPRNLTRVLAP----KLNLPYMV--ADL-YLDD--QVD- 333 (396)
Q Consensus 266 ~~vGvnN--hmGs~~t~~~~~m~~vl~~l~~rgL~flDs~Ts~~Sva~~~A~----~~gvp~~~--~dv-fLD~--~~~- 333 (396)
T Consensus 150 ~~tG~rP~Gw~s~~~s~~--T~~Ll---~~~~G~~Y~sd~~~-DD~Py~~~~~~~~~l~iPy~~e~nD~~~~~~~~~~~~ 223 (297)
T TIGR03212 150 EVTGERPLGWYTGRTSPN--TRRLV---AEEGGFLYDSDSYA-DDLPYWDEVAGRPQLIVPYTLDANDMRFATPQGFNTG 223 (297)
T ss_pred HHCCCCCCCCCCCCCCCC--HHHHH---HHHCCCEEECCCCC-CCCCEEEECCCCCEEEEEEECCCCCCHHHCCCCCCCH
T ss_conf 865999881178999963--36899---99589689898888-8787668638984665540031573001045798987
Q ss_pred ---HHHHHHHHHHHHHHHHHCCEEEEEE-EC----CHHHHHHHHHHHHHHHHCC-CEEEEHHHHHH
Q ss_conf ---9999999999999998719489998-08----8788999999975688769-18996777430
Q gi|254780558|r 334 ---RDKIREKLKGLEEIARTTGQAIGVA-VA----FDESIEVISQWLQQEHVRD-VSVVPLSCLAK 390 (396)
Q Consensus 334 ---~~~I~~qL~~l~~~Ar~~G~AI~ig-h~----~p~Ti~~L~~w~~~l~~~g-i~lVpvS~l~~ 390 (396)
T Consensus 224 ~~~~~~~~d~Fd~l~~Eg~~~~r~~~i~lHP~i~G~P~Ri~~Le~~l~~i~~~~~VW~at~~eIA~ 289 (297)
T TIGR03212 224 EQFFTYLRDAFDVLYAEGEGAPKMMSIGLHCRLVGRPGRIAALQRFLDYVQSHDKVWVARRIDIAR 289 (297)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHHHH
T ss_conf 999999999999999960899637988428664688899999999999997189989857899999