HHsearch alignment of GI: 254780558 and MMDB domain: 1ny1_A_
>1ny1_A (A:) Probable polysaccharide deacetylase PDAA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium; 1.80A {Bacillus subtilis}
Probab=98.30 E-value=5.2e-06 Score=57.23 Aligned_cols=185 Identities=11% Similarity=0.011 Sum_probs=119.0
Q ss_pred CCCCCEEEEEECCCCCCCHHHH---HHHHHCCCCCEEEEECC-CCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCC
Q ss_conf 4668658999737787716889---99983793508987089-8768999999998599299981766568987787855
Q gi|254780558|r 167 NASGARIAIVVSGLGISQTGTQ---RAINLLPANITLAFASN-GNSLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSY 242 (396)
Q Consensus 167 ~a~~~riAIVIddlG~~~~~~~---~ai~~LP~~vT~A~~P~-~~~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~ 242 (396)
......|+|-+||-.-+ ..+. ..+.+.-.+.||-+.-. .....+.+++....||||=-|- | -+
T Consensus 39 ~~~~~~VaLTFDDg~~~-~~t~~iL~~L~~~~v~aTFFv~g~~~~~~p~~~~~~~~~GheIg~Ht------~------sH 105 (240)
T 1ny1_A 39 NTKEKTIYLTFDNGYEN-GYTPKVLDVLKKHRVTGTFFVTGHFVKDQPQLIKRXSDEGHIIGNHS------F------HH 105 (240)
T ss_dssp CTTSSEEEEEEEESSCC-SCHHHHHHHHHHTTCCCEEEECHHHHHHCHHHHHHHHHTTCEEEECC------S------SC
T ss_pred CCCCCEEEEEEECCCCC-CCHHHHHHHHHHCCCCEEEEEECHHHHHCHHHHHHHHHCCCEEEECC------C------CC
T ss_conf 99998799988689983-42899999999759987999833112329899999985897898446------6------67
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCEEEEE-----CCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHH
Q ss_conf 446789989999999999985589359800-----123000049899999999985069289974976322678989870
Q gi|254780558|r 243 TLKVTQTVQQLLNRLRYSLRRGTGYFGVMN-----YRGAMLLSNKESAEVIFKEFAKRGLLFFDDGSSPRNLTRVLAPKL 317 (396)
Q Consensus 243 ~L~~~~~~~~~~~~l~~~l~~~p~~vGvnN-----hmGs~~t~~~~~m~~vl~~l~~rgL~flDs~Ts~~Sva~~~A~~~ 317 (396)
.-+..++.+++++-+.+.-..+-...|... ..|+.. ...+...+++.|...++-......
T Consensus 106 ~~l~~ls~~~~~~ei~~~~~~l~~~~G~~~~~~~~p~~~~~------~~~~~~~~~~~g~~~~~~~~~~~D--------- 170 (240)
T 1ny1_A 106 PDLTTKTADQIQDELDSVNEEVYKITGKQDNLYLRPPRGVF------SEYVLKETKRLGYQTVFWSVAFVD--------- 170 (240)
T ss_dssp CCGGGSCHHHHHHHHHHHHHHHHHHHSCCCCCEECCGGGEE------CHHHHHHHHHTTCEEBCCSBCCSC---------
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCC------CHHHHHHHHHCCCEEEEEEEECCC---------
T ss_conf 87101798999999999999999974876540215998878------999999999869979977754788---------
Q ss_pred CCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCEEEEEEE-CCHHHHHHHHHHHHHHHHCCCEEEEHHHHHHCC
Q ss_conf 994698458862899999999999999999987194899980-887889999999756887691899677743064
Q gi|254780558|r 318 NLPYMVADLYLDDQVDRDKIREKLKGLEEIARTTGQAIGVAV-AFDESIEVISQWLQQEHVRDVSVVPLSCLAKLS 392 (396)
Q Consensus 318 gvp~~~~dvfLD~~~~~~~I~~qL~~l~~~Ar~~G~AI~igh-~~p~Ti~~L~~w~~~l~~~gi~lVpvS~l~~~~ 392 (396)
-..+.......+.. -...-.+.| .|.+.| .++.|+++|.+++..++++|+++|++++|+.-.
T Consensus 171 --------~~~~~~~~~~~~~~----~~~~~~~~~-~iiL~Hd~~~~t~~~l~~li~~lk~~G~~~vtl~el~~~~ 233 (240)
T 1ny1_A 171 --------WKINNQKGKKYAYD----HXIKQAHPG-AIYLLHTVSRDNAEALDDAITDLKKQGYTFKSIDDLXFEK 233 (240)
T ss_dssp --------CCGGGCCCHHHHHH----HHHHTCCTT-EEEEECSCSTTHHHHHHHHHHHHHHHTCEEECHHHHHHHH
T ss_pred --------CCCCCCHHHHHHHH----HHHHCCCCC-EEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEHHHHHHCC
T ss_conf --------65566365999999----999568999-0899879996799999999999997899998869955080