Query gi|254780558|ref|YP_003064971.1| hypothetical protein CLIBASIA_02225 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 396 No_of_seqs 176 out of 400 Neff 6.1 Searched_HMMs 33803 Date Wed Jun 1 16:21:25 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780558.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >2qv5_A AGR_C_5032P, uncharact 99.9 2.3E-21 6.9E-26 154.1 27.7 229 164-392 23-251 (261) 2 >2nly_A BH1492 protein, diverg 99.9 4.6E-20 1.4E-24 145.9 23.5 224 168-392 1-228 (245) 3 >1ny1_A Probable polysaccharid 98.3 5.2E-06 1.5E-10 57.2 9.0 185 167-392 39-233 (240) 4 >2w3z_A Putative deacetylase; 98.0 3.7E-05 1.1E-09 51.9 7.8 187 171-386 107-311 (311) 5 >2vyo_A ECU11_0510, chitooligo 97.8 0.0026 7.8E-08 40.1 15.7 184 171-392 26-219 (254) 6 >2j13_A Polysaccharide deacety 97.4 0.0021 6.3E-08 40.7 9.8 185 169-394 53-247 (247) 7 >2cc0_A Acetyl-xylan esterase; 97.1 0.021 6.2E-07 34.5 14.0 182 170-392 4-189 (195) 8 >2c71_A Glycoside hydrolase, f 96.8 0.029 8.5E-07 33.6 10.9 177 171-393 5-193 (216) 9 >2iw0_A Chitin deacetylase; hy 96.6 0.05 1.5E-06 32.0 12.9 189 172-392 43-241 (254) 10 >3cl6_A PUUE allantoinase; URI 96.5 0.048 1.4E-06 32.2 10.3 175 196-390 42-242 (255) 11 >2i5i_A UPF0249 protein EF_304 96.5 0.06 1.8E-06 31.6 17.9 215 169-388 3-261 (263) 12 >2c1i_A Peptidoglycan glcnac d 96.4 0.074 2.2E-06 31.0 13.5 178 172-392 2-184 (196) 13 >1v6t_A Hypothetical UPF0271 p 96.0 0.11 3.3E-06 29.9 17.3 199 179-390 8-255 (255) 14 >2dfa_A Hypothetical UPF0271 p 94.7 0.3 8.9E-06 27.2 10.6 195 178-385 7-250 (250) 15 >3iix_A Biotin synthetase, put 86.5 2.2 6.4E-05 21.7 10.3 144 243-388 79-230 (348) 16 >1yx1_A Hypothetical protein P 77.8 1.4 4.1E-05 23.0 2.2 82 205-305 82-167 (264) 17 >2p8b_A Mandelate racemase/muc 76.7 4.9 0.00015 19.5 9.9 145 206-369 20-185 (226) 18 >2nql_A AGR_PAT_674P, isomeras 76.1 5.1 0.00015 19.4 5.7 152 200-375 12-190 (232) 19 >2a5h_A L-lysine 2,3-aminomuta 73.7 3.9 0.00012 20.1 3.6 144 246-389 48-199 (248) 20 >2q02_A Putative cytoplasmic p 73.6 5.9 0.00017 19.0 11.8 104 188-304 57-173 (272) 21 >2g0w_A LMO2234 protein; 16411 70.5 6.9 0.00021 18.5 9.6 55 248-302 130-184 (296) 22 >1xw8_A UPF0271 protein YBGL; 69.9 7.2 0.00021 18.4 8.3 143 178-331 7-164 (172) 23 >1o98_A 2,3-bisphosphoglycerat 66.7 3 8.9E-05 20.8 1.8 61 311-371 59-121 (238) 24 >2qul_A D-tagatose 3-epimerase 62.2 10 0.0003 17.5 12.4 75 310-384 93-184 (290) 25 >3c8f_A Pyruvate formate-lyase 60.2 11 0.00032 17.3 6.2 128 246-375 48-190 (245) 26 >1rk6_A D-aminoacylase; TIM ba 59.2 11 0.00034 17.2 8.0 124 245-373 72-210 (233) 27 >3cqj_A L-ribulose-5-phosphate 57.6 12 0.00036 17.0 15.7 153 207-384 30-195 (295) 28 >3kws_A Putative sugar isomera 57.0 12 0.00037 17.0 8.7 88 209-302 106-198 (287) 29 >3fcp_A L-Ala-D/L-Glu epimeras 56.3 13 0.00038 16.9 8.5 147 194-365 9-180 (229) 30 >2ekc_A AQ_1548, tryptophan sy 55.9 13 0.00038 16.8 4.0 133 191-344 118-256 (262) 31 >3cny_A Inositol catabolism pr 55.0 13 0.0004 16.7 8.9 117 183-302 56-190 (301) 32 >2e67_A Hypothetical protein T 54.1 14 0.00041 16.7 9.8 177 171-361 13-217 (264) 33 >1l6r_A Hypothetical protein T 53.6 10 0.0003 17.5 2.6 32 275-306 29-60 (67) 34 >1pzx_A Hypothetical protein A 51.4 15 0.00045 16.4 8.6 87 249-345 30-120 (122) 35 >3egl_A DEGV family protein; a 49.9 16 0.00048 16.2 6.5 90 248-345 45-134 (136) 36 >2pp0_A L-talarate/galactarate 48.8 17 0.0005 16.1 8.6 132 209-365 26-182 (222) 37 >3eez_A Putative mandelate rac 48.6 17 0.0005 16.1 12.1 140 209-373 23-185 (230) 38 >2zvr_A Uncharacterized protei 47.5 18 0.00052 16.0 9.6 81 209-302 115-202 (290) 39 >3c3d_A 2-phospho-L-lactate tr 42.5 13 0.00038 16.8 1.7 158 172-351 135-309 (311) 40 >2ps2_A Putative mandelate rac 41.4 22 0.00064 15.4 12.5 150 207-376 21-189 (236) 41 >2ppg_A Putative isomerase; st 39.4 23 0.00069 15.2 9.9 151 200-375 12-190 (232) 42 >1nw3_A Histone methyltransfer 38.7 15 0.00044 16.5 1.5 75 220-294 4-80 (97) 43 >1yny_A D-hydantoinase, dhpase 38.6 24 0.00071 15.1 11.6 129 245-382 73-206 (291) 44 >2vzs_A CSXA, EXO-beta-D-gluco 38.4 24 0.00072 15.1 9.6 110 190-302 48-163 (340) 45 >3igz_B Cofactor-independent p 37.8 25 0.00073 15.1 5.6 65 311-375 59-137 (239) 46 >1c3p_A Protein (HDLP (histone 37.7 25 0.00073 15.0 3.2 130 171-316 160-309 (375) 47 >2az4_A Hypothetical protein E 35.9 26 0.00078 14.9 6.9 109 196-306 27-154 (154) 48 >3ilx_A First ORF in transposo 35.4 27 0.0008 14.8 2.7 52 337-388 20-72 (101) 49 >3bdk_A D-mannonate dehydratas 35.1 27 0.00081 14.8 12.1 56 247-302 188-258 (386) 50 >2k6x_A Sigma-A, RNA polymeras 34.6 9.9 0.00029 17.6 0.1 52 335-386 5-63 (72) 51 >2rdx_A Mandelate racemase/muc 34.1 28 0.00084 14.7 14.5 138 208-371 20-181 (227) 52 >1mxg_A Alpha amylase; hyperth 34.0 28 0.00084 14.7 2.9 21 208-228 88-108 (279) 53 >1lxj_A YBL001C, hypothetical 33.6 28 0.00083 14.7 2.3 78 251-347 23-101 (104) 54 >2ftw_A Dihydropyrimidine amid 32.6 30 0.00089 14.5 11.0 126 247-382 75-206 (291) 55 >3jr7_A Uncharacterized EGV fa 31.8 31 0.00091 14.4 4.2 66 273-346 64-133 (135) 56 >2qm3_A Predicted methyltransf 31.6 31 0.00092 14.4 3.5 42 281-322 68-109 (116) 57 >2o7s_A DHQ-SDH, bifunctional 29.6 34 0.00099 14.2 3.4 97 274-374 70-172 (219) 58 >1gkp_A Hydantoinase; hydrolas 29.4 34 0.001 14.2 9.2 112 264-382 89-205 (289) 59 >1uv7_A General secretion path 29.4 34 0.001 14.2 3.5 43 344-386 29-81 (110) 60 >2uva_G Fatty acid synthase be 28.9 34 0.001 14.1 4.6 60 241-300 8-71 (126) 61 >3g41_A Amino acid ABC transpo 28.2 35 0.001 14.1 3.8 29 352-380 103-131 (155) 62 >1itw_A Isocitrate dehydrogena 28.1 28 0.00084 14.7 1.5 93 196-291 204-318 (463) 63 >1x62_A C-terminal LIM domain 28.1 13 0.00039 16.8 -0.2 13 292-304 4-16 (32) 64 >1lt8_A Betaine-homocysteine m 27.9 36 0.0011 14.0 6.9 158 199-380 157-322 (406) 65 >1g5a_A Amylosucrase; glycosyl 27.6 36 0.0011 14.0 6.4 19 209-227 165-183 (414) 66 >2b0t_A NADP isocitrate dehydr 27.5 30 0.00087 14.6 1.5 94 195-291 199-314 (460) 67 >3ctp_A Periplasmic binding pr 27.4 37 0.0011 14.0 6.5 51 335-385 73-125 (200) 68 >2qo3_A Eryaii erythromycin po 27.2 37 0.0011 14.0 2.3 54 244-301 5-61 (69) 69 >1k77_A EC1530, hypothetical p 27.1 37 0.0011 13.9 10.4 22 278-299 154-175 (246) 70 >2g7z_A Conserved hypothetical 27.0 37 0.0011 13.9 4.6 63 328-390 46-110 (125) 71 >3ffh_A Histidinol-phosphate a 26.6 38 0.0011 13.9 5.0 60 195-263 75-134 (136) 72 >1rbl_M Ribulose 1,5 bisphosph 25.7 39 0.0012 13.8 5.1 81 199-279 13-100 (109) 73 >3ke3_A Putative serine-pyruva 25.6 40 0.0012 13.8 7.3 150 170-329 49-213 (271) 74 >3dg3_A Muconate cycloisomeras 25.0 41 0.0012 13.7 8.0 144 207-374 22-190 (230) 75 >2pff_B Fatty acid synthase su 23.6 43 0.0013 13.5 4.8 55 245-299 8-67 (95) 76 >1pq4_A Periplasmic binding pr 23.4 43 0.0013 13.5 5.7 46 278-324 31-78 (82) 77 >1uj6_A Ribose 5-phosphate iso 23.4 20 0.0006 15.6 0.1 53 283-335 11-63 (147) 78 >1n3l_A Tyrosyl-tRNA synthetas 23.0 20 0.00059 15.6 -0.0 60 242-301 5-83 (101) 79 >1bs0_A Protein (8-amino-7-oxo 22.8 45 0.0013 13.4 1.8 110 269-386 23-140 (175) 80 >3k89_A Malonyl COA-ACP transa 22.3 46 0.0014 13.4 5.0 59 241-299 2-63 (73) 81 >3e0f_A Putative metal-depende 22.2 25 0.00075 15.0 0.4 21 341-361 104-124 (220) 82 >2p6p_A Glycosyl transferase; 21.8 42 0.0013 13.6 1.4 42 282-326 93-136 (217) 83 >3ezo_A Malonyl COA-acyl carri 21.4 48 0.0014 13.3 4.6 60 240-299 2-64 (74) 84 >1pii_A N-(5'phosphoribosyl)an 21.4 48 0.0014 13.3 6.0 82 209-314 146-227 (240) 85 >1cyg_A Cyclodextrin glucanotr 21.3 48 0.0014 13.2 6.4 37 268-304 254-294 (335) 86 >2oho_A Glutamate racemase; is 21.3 48 0.0014 13.2 4.4 67 293-359 11-82 (142) 87 >3faw_A Reticulocyte binding p 20.9 49 0.0014 13.2 6.3 40 209-263 117-156 (340) 88 >2nva_A Arginine decarboxylase 20.6 50 0.0015 13.2 8.6 125 173-306 61-193 (233) 89 >3g87_A Malonyl COA-acyl carri 20.4 50 0.0015 13.1 2.4 54 247-301 10-64 (71) No 1 >>2qv5_A AGR_C_5032P, uncharacterized protein ATU2773; structural genomics, unknown function, PSI-2, protein structure initiative; 1.90A {Agrobacterium tumefaciens str} (A:) Probab=99.92 E-value=2.3e-21 Score=154.09 Aligned_cols=229 Identities=44% Similarity=0.695 Sum_probs=219.4 Q ss_pred CCCCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCC Q ss_conf 12346686589997377877168899998379350898708987689999999985992999817665689877878554 Q gi|254780558|r 164 FCSNASGARIAIVVSGLGISQTGTQRAINLLPANITLAFASNGNSLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYT 243 (396) Q Consensus 164 ~~~~a~~~riAIVIddlG~~~~~~~~ai~~LP~~vT~A~~P~~~~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~ 243 (396) .+..+.+..|+|.+||.+.+...-.+.+.+.+.+.||-+.....+..+.++..++.||||-.|-.+.+..+...+.+... T Consensus 23 ~~~~~~~~~ValTfDDg~~~~~~il~~L~~~~vkaTFFv~~~~~~~~~~~~~~~~~GhEIg~Ht~~H~~~~~~~~~~~~~ 102 (261) T 2qv5_A 23 PWSGARGTRVAIVVGGLGLSQTGSQKAIRDLPPEVTLGFAASGNSLQRWMQDARREGHEILLQIPLEPFGYPGTNPGPDT 102 (261) T ss_dssp CCCCCSSEEEEEEEEEETSCHHHHHHHHHHSCTTSEEEEETTCSSHHHHHHHHHHHTCCEEEEEEECCTTTTTSCCCTTC T ss_pred CCCCCCCCEEEEEEECCCCCCHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCC T ss_conf 89988886699999479998367899998589872799878997779999999977987999766676688878888554 Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCEEE Q ss_conf 46789989999999999985589359800123000049899999999985069289974976322678989870994698 Q gi|254780558|r 244 LKVTQTVQQLLNRLRYSLRRGTGYFGVMNYRGAMLLSNKESAEVIFKEFAKRGLLFFDDGSSPRNLTRVLAPKLNLPYMV 323 (396) Q Consensus 244 L~~~~~~~~~~~~l~~~l~~~p~~vGvnNhmGs~~t~~~~~m~~vl~~l~~rgL~flDs~Ts~~Sva~~~A~~~gvp~~~ 323 (396) ++..++.+++++.+.++...+..+.|+.++.......+...+...+...+....++.+......+.....+...++.... T Consensus 103 ~l~~ls~~~~~~ei~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (261) T 2qv5_A 103 LLAGDPAKVNIDRLHRSMAKITNYTGVMNYLGGRFLAEQSALEPVMRDIGKRGLLFLDDGSSAQSLSGGIAKAISAPQGF 182 (261) T ss_dssp BCTTSCHHHHHHHHHHHHTTCCCCSEEEEEECTTGGGCHHHHHHHHHHHHHTTCEEEECSCCTTCCHHHHHHHHTCCEEE T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHCCCCEEE T ss_conf 56567899999999999984537089846755212269999999999998769789957887563899999975997564 Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHCCEEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEHHHHHHCC Q ss_conf 458862899999999999999999987194899980887889999999756887691899677743064 Q gi|254780558|r 324 ADLYLDDQVDRDKIREKLKGLEEIARTTGQAIGVAVAFDESIEVISQWLQQEHVRDVSVVPLSCLAKLS 392 (396) Q Consensus 324 ~dvfLD~~~~~~~I~~qL~~l~~~Ar~~G~AI~igh~~p~Ti~~L~~w~~~l~~~gi~lVpvS~l~~~~ 392 (396) .+...+...+...+..++......++++|..+.++|.++.|+++|.+++..++++|+.+|+++++++.. T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~lk~~g~~fvt~~e~~~~~ 251 (261) T 2qv5_A 183 ADVLLDGEVTEASILRKLDDLERIARRNGQAIGVASAFDESIAAISKWSREAGGRGIEIVGVSALVSGQ 251 (261) T ss_dssp CSEETTSSCSHHHHHHHHHHHHHHHHHHSEEEEEEECCHHHHHHHHHHHHHGGGGTEEECCHHHHC--- T ss_pred ECEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHCCEEEEEHHHHHHCC T ss_conf 033248999999999999999999977393799978998999999997267775886999879964100 No 2 >>2nly_A BH1492 protein, divergent polysaccharide deacetylase hypothetical protein; PFAM04748, structural genomics, PSI, protein structure initiative; 2.50A {Bacillus halodurans} (A:) Probab=99.88 E-value=4.6e-20 Score=145.89 Aligned_cols=224 Identities=20% Similarity=0.310 Sum_probs=210.6 Q ss_pred CCCCEEEEEECCCCCCCHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCC Q ss_conf 66865899973778771688999983793508987089876899999999859929998176656898778785544678 Q gi|254780558|r 168 ASGARIAIVVSGLGISQTGTQRAINLLPANITLAFASNGNSLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLKVT 247 (396) Q Consensus 168 a~~~riAIVIddlG~~~~~~~~ai~~LP~~vT~A~~P~~~~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~~ 247 (396) ++.+.|||.+||.|.+.... +.+.+...+.||.+........+.+++..+.||||-.|--..+......+.+....+.. T Consensus 1 ~~~~~valTfDD~~~~~~il-~~L~~~~ikaTfFv~g~~~~~p~~~~~~~~~GhEIg~Ht~~H~~~~~~~~~~~~~~~~~ 79 (245) T 2nly_A 1 GEMKRAAIIIDDFGGDVKGV-DDFLTGEIPVTVAVMPFLEHSTKQAEIAQAAGLEVIVHMPLEPKKGKISWLGPSGITSN 79 (245) T ss_dssp --CEEEEEEEEEESSCCTTH-HHHHTCSSCEEEEECSSSTTHHHHHHHHHHTTCEEEEEEEECCC--------CCCBCTT T ss_pred CCCCEEEEEEECCCCCHHHH-HHHHCCCCCEEEEECCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCC T ss_conf 99778999995699996789-99974899879998589866599999999869978885466754323467675545444 Q ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCEEEEEEE Q ss_conf 99899999999999855893598001230000498999999999850692899749763226789898709946984588 Q gi|254780558|r 248 QTVQQLLNRLRYSLRRGTGYFGVMNYRGAMLLSNKESAEVIFKEFAKRGLLFFDDGSSPRNLTRVLAPKLNLPYMVADLY 327 (396) Q Consensus 248 ~~~~~~~~~l~~~l~~~p~~vGvnNhmGs~~t~~~~~m~~vl~~l~~rgL~flDs~Ts~~Sva~~~A~~~gvp~~~~dvf 327 (396) ++.+++++.+......+..++|..++.+.+...+...|..........+..|.+......+.....+...+++....+.+ T Consensus 80 ~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (245) T 2nly_A 80 LSVGEVKSRVRKAFDDIPYAVGLNNHMGSKIVENEKIMRAILEVVKEKNAFIIDSGTSPHSLIPQLAEELEVPYATRSIF 159 (245) T ss_dssp CCHHHHHHHHHHHHHHSTTCCEEEEEECTTGGGCHHHHHHHHHHHHHTTCEEEECCCCSSCSHHHHHHHTTCCEEECCEE T ss_pred CCHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCHHHHHHHHHHHCCCCCEECCCCCCCCHHHHHHHHHCCCCEEEEEEC T ss_conf 89999999999999876542150146665331566889999998552884225886640189999999769817999862 Q ss_pred ECCC-CCHHHHHHHHHHHHHHHHHCCEEEEEEEC---CHHHHHHHHHHHHHHHHCCCEEEEHHHHHHCC Q ss_conf 6289-99999999999999999871948999808---87889999999756887691899677743064 Q gi|254780558|r 328 LDDQ-VDRDKIREKLKGLEEIARTTGQAIGVAVA---FDESIEVISQWLQQEHVRDVSVVPLSCLAKLS 392 (396) Q Consensus 328 LD~~-~~~~~I~~qL~~l~~~Ar~~G~AI~igh~---~p~Ti~~L~~w~~~l~~~gi~lVpvS~l~~~~ 392 (396) +|.. .+......++.++...++++|..|.+.|- ++.|+++|..|+..++++|+.+|+++++++.. T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~k~~g~~fvt~~e~~~~~ 228 (245) T 2nly_A 160 LDNTHSSRKEVIKNMRKLAKKAKQGSEPIGIGHVGVRGDETYAGIRSMLDEFQAESIQLVPVSQLLPSP 228 (245) T ss_dssp SCCTTCCHHHHHHHHHHHHHHHHTTSCCEEEEECSTTHHHHHHHHGGGHHHHHHTTEEECCGGGGCC-- T ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEHHHHHCCH T ss_conf 432223406899999999998315897059864799956899999999999997990999889952762 No 3 >>1ny1_A Probable polysaccharide deacetylase PDAA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium; 1.80A {Bacillus subtilis} (A:) Probab=98.30 E-value=5.2e-06 Score=57.23 Aligned_cols=185 Identities=11% Similarity=0.011 Sum_probs=119.0 Q ss_pred CCCCCEEEEEECCCCCCCHHHH---HHHHHCCCCCEEEEECC-CCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCC Q ss_conf 4668658999737787716889---99983793508987089-8768999999998599299981766568987787855 Q gi|254780558|r 167 NASGARIAIVVSGLGISQTGTQ---RAINLLPANITLAFASN-GNSLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSY 242 (396) Q Consensus 167 ~a~~~riAIVIddlG~~~~~~~---~ai~~LP~~vT~A~~P~-~~~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~ 242 (396) ......|+|-+||-.-+ ..+. ..+.+.-.+.||-+.-. .....+.+++....||||=-|- | -+ T Consensus 39 ~~~~~~VaLTFDDg~~~-~~t~~iL~~L~~~~v~aTFFv~g~~~~~~p~~~~~~~~~GheIg~Ht------~------sH 105 (240) T 1ny1_A 39 NTKEKTIYLTFDNGYEN-GYTPKVLDVLKKHRVTGTFFVTGHFVKDQPQLIKRXSDEGHIIGNHS------F------HH 105 (240) T ss_dssp CTTSSEEEEEEEESSCC-SCHHHHHHHHHHTTCCCEEEECHHHHHHCHHHHHHHHHTTCEEEECC------S------SC T ss_pred CCCCCEEEEEEECCCCC-CCHHHHHHHHHHCCCCEEEEEECHHHHHCHHHHHHHHHCCCEEEECC------C------CC T ss_conf 99998799988689983-42899999999759987999833112329899999985897898446------6------67 Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCEEEEE-----CCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHH Q ss_conf 446789989999999999985589359800-----123000049899999999985069289974976322678989870 Q gi|254780558|r 243 TLKVTQTVQQLLNRLRYSLRRGTGYFGVMN-----YRGAMLLSNKESAEVIFKEFAKRGLLFFDDGSSPRNLTRVLAPKL 317 (396) Q Consensus 243 ~L~~~~~~~~~~~~l~~~l~~~p~~vGvnN-----hmGs~~t~~~~~m~~vl~~l~~rgL~flDs~Ts~~Sva~~~A~~~ 317 (396) .-+..++.+++++-+.+.-..+-...|... ..|+.. ...+...+++.|...++-...... T Consensus 106 ~~l~~ls~~~~~~ei~~~~~~l~~~~G~~~~~~~~p~~~~~------~~~~~~~~~~~g~~~~~~~~~~~D--------- 170 (240) T 1ny1_A 106 PDLTTKTADQIQDELDSVNEEVYKITGKQDNLYLRPPRGVF------SEYVLKETKRLGYQTVFWSVAFVD--------- 170 (240) T ss_dssp CCGGGSCHHHHHHHHHHHHHHHHHHHSCCCCCEECCGGGEE------CHHHHHHHHHTTCEEBCCSBCCSC--------- T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCC------CHHHHHHHHHCCCEEEEEEEECCC--------- T ss_conf 87101798999999999999999974876540215998878------999999999869979977754788--------- Q ss_pred CCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCEEEEEEE-CCHHHHHHHHHHHHHHHHCCCEEEEHHHHHHCC Q ss_conf 994698458862899999999999999999987194899980-887889999999756887691899677743064 Q gi|254780558|r 318 NLPYMVADLYLDDQVDRDKIREKLKGLEEIARTTGQAIGVAV-AFDESIEVISQWLQQEHVRDVSVVPLSCLAKLS 392 (396) Q Consensus 318 gvp~~~~dvfLD~~~~~~~I~~qL~~l~~~Ar~~G~AI~igh-~~p~Ti~~L~~w~~~l~~~gi~lVpvS~l~~~~ 392 (396) -..+.......+.. -...-.+.| .|.+.| .++.|+++|.+++..++++|+++|++++|+.-. T Consensus 171 --------~~~~~~~~~~~~~~----~~~~~~~~~-~iiL~Hd~~~~t~~~l~~li~~lk~~G~~~vtl~el~~~~ 233 (240) T 1ny1_A 171 --------WKINNQKGKKYAYD----HXIKQAHPG-AIYLLHTVSRDNAEALDDAITDLKKQGYTFKSIDDLXFEK 233 (240) T ss_dssp --------CCGGGCCCHHHHHH----HHHHTCCTT-EEEEECSCSTTHHHHHHHHHHHHHHHTCEEECHHHHHHHH T ss_pred --------CCCCCCHHHHHHHH----HHHHCCCCC-EEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEHHHHHHCC T ss_conf --------65566365999999----999568999-0899879996799999999999997899998869955080 No 4 >>2w3z_A Putative deacetylase; PGDA, glcnac DE-N-acetylase, hydrolase, divale metal cation dependent, carbohydrate esterase family 4; 1.45A {Streptococcus mutans UA159} (A:) Probab=97.97 E-value=3.7e-05 Score=51.86 Aligned_cols=187 Identities=9% Similarity=0.017 Sum_probs=115.7 Q ss_pred CEEEEEECCCCCCCHHH--HHHHHHCCCCCEEEEECCC--CCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCC Q ss_conf 65899973778771688--9999837935089870898--7689999999985992999817665689877878554467 Q gi|254780558|r 171 ARIAIVVSGLGISQTGT--QRAINLLPANITLAFASNG--NSLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLKV 246 (396) Q Consensus 171 ~riAIVIddlG~~~~~~--~~ai~~LP~~vT~A~~P~~--~~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~ 246 (396) ..|+|-+||-..+.... ...+.+...+.||-+.... ....++++...+.|||+-.|--..+. . ...-.. T Consensus 107 ~~V~LTFDDG~~~~~~~~il~iL~~~~i~aTfFv~~~~~~~~~~~~~~~~~~~gheIg~Ht~~H~~------l-~~~~~~ 179 (311) T 2w3z_A 107 KLVFLTFDDGVDPNMTPKILDVLAQQHVHATFFLVGCNITDKVKPILQRQITEGHALGIHSFSHVY------S-LLYPNR 179 (311) T ss_dssp CEEEEEEEEECCTTHHHHHHHHHHHTTCCCEEEECGGGCCGGGHHHHHHHHHTTCEEEECCSSCCH------H-HHSGGG T ss_pred CEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHCCCEEEECCCCCCC------C-CCCCCC T ss_conf 889997727998341899999999869978999935663415899999999729889824150422------0-027764 Q ss_pred CCCHHHHHHHHHHHHHHCCCCEEEE------ECCCCCCCCCHHHHHHHHHHHHCCCC-----EEEECCCCCCCHHHHHHH Q ss_conf 8998999999999998558935980------01230000498999999999850692-----899749763226789898 Q gi|254780558|r 247 TQTVQQLLNRLRYSLRRGTGYFGVM------NYRGAMLLSNKESAEVIFKEFAKRGL-----LFFDDGSSPRNLTRVLAP 315 (396) Q Consensus 247 ~~~~~~~~~~l~~~l~~~p~~vGvn------NhmGs~~t~~~~~m~~vl~~l~~rgL-----~flDs~Ts~~Sva~~~A~ 315 (396) .+..+++...+......+-...|.. -+.+..+... ...++.++.-... +-+|....... T Consensus 180 ~~~~~~~~~ei~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~d~~~~------- 249 (311) T 2w3z_A 180 VGNTQQIVSEVTRTQNALKDQLGQNFKTGVWRYPGGHLSWT---GLEAADKQLAAQGIQWMDWNAAVGDAEPL------- 249 (311) T ss_dssp BCCHHHHHHHHHHHHHHHHHHHCTTBCCCEECCTTCGGGCB---CCHHHHHHHHTTTCEECCCSEECCTTSCG------- T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCHH---HHHHHHHHHHHCCCEEEECCCCCCCCCCC------- T ss_conf 35899999999999999999848887542433798877767---99999999986598487456677644334------- Q ss_pred HHCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCEEEEEEE---CCHHHHHHHHHHHHHHHHCCCEEEEHH Q ss_conf 70994698458862899999999999999999987194899980---887889999999756887691899677 Q gi|254780558|r 316 KLNLPYMVADLYLDDQVDRDKIREKLKGLEEIARTTGQAIGVAV---AFDESIEVISQWLQQEHVRDVSVVPLS 386 (396) Q Consensus 316 ~~gvp~~~~dvfLD~~~~~~~I~~qL~~l~~~Ar~~G~AI~igh---~~p~Ti~~L~~w~~~l~~~gi~lVpvS 386 (396) ++...........+.........++..|..-| .++.|+++|.++++.++++|+++|++| T Consensus 250 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~h~~~~~~~~~~~L~~~i~~~~~~G~~~vt~~ 311 (311) T 2w3z_A 250 ------------ATRPTTVASMLAFLDGSAKIATNPNVQVVLMHDISEKTITLASLPQIIRYYKDRGYTFAVLK 311 (311) T ss_dssp ------------GGCCCSHHHHHHHHHHHTTTCSCTTEEEEEEECSTTCHHHHHHHHHHHHHHHHTTCEECEEC T ss_pred ------------CCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEC T ss_conf ------------56357999999998765421257998799978899952389999999999997899899869 No 5 >>2vyo_A ECU11_0510, chitooligosaccharide deacetylase; CE4 esterase, native protein, microsporidian, chitin deacetylase, hydrolase, inactive; 1.50A {Encephalitozoon cuniculi} (A:) Probab=97.82 E-value=0.0026 Score=40.15 Aligned_cols=184 Identities=11% Similarity=0.029 Sum_probs=113.8 Q ss_pred CEEEEEECCCCCCCH--HHHHHHHHCCCCCEEEEEC---CCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCC Q ss_conf 658999737787716--8899998379350898708---98768999999998599299981766568987787855446 Q gi|254780558|r 171 ARIAIVVSGLGISQT--GTQRAINLLPANITLAFAS---NGNSLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLK 245 (396) Q Consensus 171 ~riAIVIddlG~~~~--~~~~ai~~LP~~vT~A~~P---~~~~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~ 245 (396) ..|+|-+||-..+.. .-.+.+.+...+.||-+.. ......+..+...+.||||-.|- |.. ++..+ T Consensus 26 ~~V~lTfDDg~~~~~~~~il~~L~~~~i~atff~~~~~~~~~~~~~~~~~~~~~GheIg~Ht------~~H----~~~~l 95 (254) T 2vyo_A 26 GMIAINFVDGPVRGVTDRILNTLDELGVKATFSFTVNQKAVGNVGQLYRRAVEEGHNVALRV------DPS----MDEGY 95 (254) T ss_dssp SEEEEEEESCCCTTHHHHHHHHHHHHTCCCEEEECCSSCCCGGGTHHHHHHHHTTCEEEEEC------CGG----GTTCG T ss_pred CEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHCCHHHHHHHHHHCCEEEECC------CCC----CCHHC T ss_conf 98999873799822079999999985996699996451676434999999997288676346------765----00203 Q ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEEC-C---CCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCE Q ss_conf 7899899999999999855893598001-2---30000498999999999850692899749763226789898709946 Q gi|254780558|r 246 VTQTVQQLLNRLRYSLRRGTGYFGVMNY-R---GAMLLSNKESAEVIFKEFAKRGLLFFDDGSSPRNLTRVLAPKLNLPY 321 (396) Q Consensus 246 ~~~~~~~~~~~l~~~l~~~p~~vGvnNh-m---Gs~~t~~~~~m~~vl~~l~~rgL~flDs~Ts~~Sva~~~A~~~gvp~ 321 (396) ..++.+++++-+.++.+.+-...|.... + ......+.. .+..+...+....+. T Consensus 96 ~~ls~~~~~~ei~~~~~~l~~~~G~~~~~~~~p~~~~~~~~~----~~~~~~~~~~~~~~~------------------- 152 (254) T 2vyo_A 96 QCLSQDALENNVDREIDTIDGLSGTEIRYAAVPICNGQVNSE----MYNILTERGVLPVGY------------------- 152 (254) T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHTSCCCEEECCCBTTEECHH----HHHHHHTTTCEECCC------------------- T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHH----HHHHHHHHCCEEECC------------------- T ss_conf 589999999999999999999749987545324566878879----999999709869806------------------- Q ss_pred EEEEEEECCC-CCHHHHHHHHHHHHHHHHHCCEEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEHHHHHHCC Q ss_conf 9845886289-9999999999999999987194899980887889999999756887691899677743064 Q gi|254780558|r 322 MVADLYLDDQ-VDRDKIREKLKGLEEIARTTGQAIGVAVAFDESIEVISQWLQQEHVRDVSVVPLSCLAKLS 392 (396) Q Consensus 322 ~~~dvfLD~~-~~~~~I~~qL~~l~~~Ar~~G~AI~igh~~p~Ti~~L~~w~~~l~~~gi~lVpvS~l~~~~ 392 (396) ..|.. .+...-......-.....+.+..+..-++.+.|+++|...++.++++|+.+|+++++++.. T Consensus 153 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~i~~~~~~g~~~~~l~~~~~~~ 219 (254) T 2vyo_A 153 -----TFCPYDYDDPVGEFESMIEGSDPKHHSFIILMHDGQEADTSRLENMVKIGKDKGYRFVNMDECLQGY 219 (254) T ss_dssp -----SBCGGGSSSHHHHHHHHHHTSCTTTCCEEEEEEGGGGSSCHHHHHHHHHHHHHTCEECCHHHHTTTC T ss_pred -----CCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEHHHHHCCC T ss_conf -----5355645484269999999852889697999979766489999999999997899998889964437 No 6 >>2j13_A Polysaccharide deacetylase; family 4, peptidoglycan, hydrolase, bacterial cell WALL, carbohydrate esterase; 1.7A {Bacillus anthracis} (A:) Probab=97.40 E-value=0.0021 Score=40.72 Aligned_cols=185 Identities=9% Similarity=-0.047 Sum_probs=110.9 Q ss_pred CCCEEEEEECCCCCCCH--HHHHHHHHCCCCCEEEEECC-CCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCC Q ss_conf 68658999737787716--88999983793508987089-8768999999998599299981766568987787855446 Q gi|254780558|r 169 SGARIAIVVSGLGISQT--GTQRAINLLPANITLAFASN-GNSLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLK 245 (396) Q Consensus 169 ~~~riAIVIddlG~~~~--~~~~ai~~LP~~vT~A~~P~-~~~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~ 245 (396) ....|+|-+||-..+.. .....+.+...+.||-+.-. .....+..++..+.|||+--|- + .+.-+ T Consensus 53 ~~~~v~lTFDDG~~~~~~~~~l~~L~~~~i~aTffv~g~~~~~~~~~~~~~~~~Gheig~Ht------~------~H~~l 120 (247) T 2j13_A 53 KKKDIYLTFDNGYENGYTGKILDVLKEKKVPATFFVTGHYIKTQKDLLLRMKDEGHIIGNHS------W------SHPDF 120 (247) T ss_dssp TSCEEEEEEEESSCCSCHHHHHHHHHHHTCCEEEEECHHHHHHCHHHHHHHHHTTCEEEECC------S------SCCCG T ss_pred CCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEEECHHHHHCHHHHHHCCCCCCEEEEEC------C------CCCCC T ss_conf 99869999874888676599999999879968999967313329177764106895897402------5------67871 Q ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEE-----ECCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCC Q ss_conf 78998999999999998558935980-----0123000049899999999985069289974976322678989870994 Q gi|254780558|r 246 VTQTVQQLLNRLRYSLRRGTGYFGVM-----NYRGAMLLSNKESAEVIFKEFAKRGLLFFDDGSSPRNLTRVLAPKLNLP 320 (396) Q Consensus 246 ~~~~~~~~~~~l~~~l~~~p~~vGvn-----NhmGs~~t~~~~~m~~vl~~l~~rgL~flDs~Ts~~Sva~~~A~~~gvp 320 (396) ..++.+++...+......+-..+|.. -..|+.+... +...+++.+....+.. ..+. T Consensus 121 ~~l~~e~~~~ei~~~~~~l~~~~g~~~~~~~~p~~~~~~~~------~~~~~~~~~~~~~~~~--~~~~----------- 181 (247) T 2j13_A 121 TAVNDEKLREELTSVTEEIKKVTGQKEVKYVRPPRGVFSER------TLALTKEMGYYNVFWS--LAFL----------- 181 (247) T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHCCSCCCEECCGGGEECHH------HHHHHHHTTCEEECCS--EECC----------- T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH------HHHHHHHHCCEEEECC--CCCC----------- T ss_conf 11138999999999999999986378865456870333123------4699998098577234--5567----------- Q ss_pred EEEEEEEECCC-CCHHHHHHHHHHHHHHHHHCCEEEEEEE-CCHHHHHHHHHHHHHHHHCCCEEEEHHHHHHCCCC Q ss_conf 69845886289-9999999999999999987194899980-88788999999975688769189967774306478 Q gi|254780558|r 321 YMVADLYLDDQ-VDRDKIREKLKGLEEIARTTGQAIGVAV-AFDESIEVISQWLQQEHVRDVSVVPLSCLAKLSSP 394 (396) Q Consensus 321 ~~~~dvfLD~~-~~~~~I~~qL~~l~~~Ar~~G~AI~igh-~~p~Ti~~L~~w~~~l~~~gi~lVpvS~l~~~~~~ 394 (396) |.. .+...+.+.... ....-+...+.++| ..+.|.++|.+++..++++|.++|.|++++...-| T Consensus 182 --------~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~l~~~G~~~vtl~~~~~~~~p 247 (247) T 2j13_A 182 --------DWKVDEQRGWQYAHNN--VMTMIHPGSILLLHAISKDNAEALAKIIDDLREKGYHFKSLDDLVKSNQP 247 (247) T ss_dssp --------CC--------------------CCTTBEEEECCCSTTHHHHHHHHHHHHHHTTCEEECHHHHHHTC-- T ss_pred --------CCCCCCHHHHHHHHHH--HHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEHHHHHCCCCC T ss_conf --------7642101589999999--99527999689953999779999999999999789999886996357998 No 7 >>2cc0_A Acetyl-xylan esterase; hydrolase, carbohydrate esterase; 1.6A {Streptomyces lividans} (A:) Probab=97.11 E-value=0.021 Score=34.45 Aligned_cols=182 Identities=11% Similarity=-0.049 Sum_probs=114.1 Q ss_pred CCEEEEEECCCCCCCH-HHHHHHHHCCCCCEEEEEC-CCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCC Q ss_conf 8658999737787716-8899998379350898708-9876899999999859929998176656898778785544678 Q gi|254780558|r 170 GARIAIVVSGLGISQT-GTQRAINLLPANITLAFAS-NGNSLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLKVT 247 (396) Q Consensus 170 ~~riAIVIddlG~~~~-~~~~ai~~LP~~vT~A~~P-~~~~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~~ 247 (396) ...|+|-+||---+.. .-...+.+.-.+.||-+.. +.......++...+.||||=.|= | .+.-+.. T Consensus 4 ~~~v~LTfDDG~~~~~~~~l~~L~k~~i~aTff~~g~~~~~~~~~~~~~~~~Gheig~Ht------~------~H~~l~~ 71 (195) T 2cc0_A 4 NGYVGLTFDDGPSGSTQSLLNALRQNGLRATMFNQGQYAAQNPSLVRAQVDAGMWVANHS------Y------THPHMTQ 71 (195) T ss_dssp SEEEEEEEESCCSTTHHHHHHHHHHTTCCCEEEECHHHHHHCHHHHHHHHHTTCEEEECC------S------SCCCGGG T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECHHHHHCCHHHHHHHHCCCHHHHCC------C------CCCCHHH T ss_conf 998999870798162999999999879938999967312317346666653020234311------4------4716555 Q ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECC-CCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCEEEEEE Q ss_conf 998999999999998558935980012-3000049899999999985069289974976322678989870994698458 Q gi|254780558|r 248 QTVQQLLNRLRYSLRRGTGYFGVMNYR-GAMLLSNKESAEVIFKEFAKRGLLFFDDGSSPRNLTRVLAPKLNLPYMVADL 326 (396) Q Consensus 248 ~~~~~~~~~l~~~l~~~p~~vGvnNhm-Gs~~t~~~~~m~~vl~~l~~rgL~flDs~Ts~~Sva~~~A~~~gvp~~~~dv 326 (396) ++.+++..-+......+-...|..-.. -.-+-.-... +.+.|++.|..+....... T Consensus 72 l~~~~~~~ei~~~~~~l~~~~g~~~~~~~~P~g~~~~~---~~~~l~~~g~~~~~~~~~~-------------------- 128 (195) T 2cc0_A 72 LGQAQMDSEISRTQQAIAGAGGGTPKLFRPPYGETNAT---LRSVEAKYGLTEVIWDVDS-------------------- 128 (195) T ss_dssp SCHHHHHHHHHHHHHHHHHTTSCCCSEECCGGGCCCHH---HHHHHHHTTCEECCCSEEC-------------------- T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHH---HHHHHHHCCCCCCCCCCCC-------------------- T ss_conf 08999999999999999998589752685872565567---8999997398675277467-------------------- Q ss_pred EECC-CCCHHHHHHHHHHHHHHHHHCCEEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEHHHHHHCC Q ss_conf 8628-99999999999999999987194899980887889999999756887691899677743064 Q gi|254780558|r 327 YLDD-QVDRDKIREKLKGLEEIARTTGQAIGVAVAFDESIEVISQWLQQEHVRDVSVVPLSCLAKLS 392 (396) Q Consensus 327 fLD~-~~~~~~I~~qL~~l~~~Ar~~G~AI~igh~~p~Ti~~L~~w~~~l~~~gi~lVpvS~l~~~~ 392 (396) .|. ..+...+.+.+. ....|..+..-+..+.|++.|...++.++++|+++|+|+++++.. T Consensus 129 -~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~t~~~l~~~~~~~~~~g~~~~~l~~~l~~~ 189 (195) T 2cc0_A 129 -QDWNNASTDAIVQAVS-----RLGNGQVILMHDWPANTLAAIPRIAQTLAGKGLCSGMISPQTGRA 189 (195) T ss_dssp -CGGGTCCHHHHHHHHH-----TCCTTCEEEEESSCHHHHHHHHHHHHHHHHTTEEECEECTTTSSE T ss_pred -CCCCCCCHHHHHHHHH-----CCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCC T ss_conf -6466678999999861-----569996799638935499999999999998899899761135989 No 8 >>2c71_A Glycoside hydrolase, family 11\:clostridium cellulosome enzyme, dockerin type I\:polysaccharide...; acetyl-xylan, esterases, metal-ION; 1.05A {Clostridium thermocellum} (A:) Probab=96.83 E-value=0.029 Score=33.58 Aligned_cols=177 Identities=10% Similarity=0.001 Sum_probs=108.4 Q ss_pred CEEEEEECCCCCCCHH--HHHHHHHCCCCCEEEEECC--CCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCC Q ss_conf 6589997377877168--8999983793508987089--87689999999985992999817665689877878554467 Q gi|254780558|r 171 ARIAIVVSGLGISQTG--TQRAINLLPANITLAFASN--GNSLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLKV 246 (396) Q Consensus 171 ~riAIVIddlG~~~~~--~~~ai~~LP~~vT~A~~P~--~~~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~ 246 (396) ..|+|-+||-..+... -.+.+.+...+.|+-+... .....+.+++..+.||||--|= | -+.-+. T Consensus 5 ~~v~lTfDDg~~~~~~~~il~~L~~~~i~aT~fv~g~~~~~~~~~~~~~l~~~GheIg~Ht------~------~H~~~~ 72 (216) T 2c71_A 5 KLVALTFDDGPDNVLTARVLDKLDKYNVKATFMVVGQRVNDSTAAIIRRMVNSGHEIGNHS------W------SYSGMA 72 (216) T ss_dssp CEEEEEEESCCCHHHHHHHHHHHHHHTCCCEEEECGGGCSHHHHHHHHHHHHTTCEEEECC------S------SSSCCT T ss_pred CEEEEEEECCCCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHCCEEECCCC------C------CCCCHH T ss_conf 9999988689981419999999998698399999451210127899987763476862464------6------784844 Q ss_pred CCCHHHHHHHHHHHHHHCCCCE-----EEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCE Q ss_conf 8998999999999998558935-----98001230000498999999999850692899749763226789898709946 Q gi|254780558|r 247 TQTVQQLLNRLRYSLRRGTGYF-----GVMNYRGAMLLSNKESAEVIFKEFAKRGLLFFDDGSSPRNLTRVLAPKLNLPY 321 (396) Q Consensus 247 ~~~~~~~~~~l~~~l~~~p~~v-----GvnNhmGs~~t~~~~~m~~vl~~l~~rgL~flDs~Ts~~Sva~~~A~~~gvp~ 321 (396) +++.++.++.+......+-... +..-..|+. +.. +.+.+.+.|...+.+ ... T Consensus 73 ~~~~~~~~~ei~~~~~~l~~~~g~~~~~~r~P~~~~---~~~----~~~~~~~~~~~~~~~--~~~-------------- 129 (216) T 2c71_A 73 NMSPDQIRKSIADTNAVIQKYAGTTPKFFRPPNLET---SPT----LFNNVDLVFVGGLTA--NDW-------------- 129 (216) T ss_dssp TCCHHHHHHHHHHHHHHHHHHHSCCCSEECCGGGCC---CHH----HHHHCCSEEBCCBCC--STT-------------- T ss_pred HCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC---CHH----HHHHHHHHHHCCEEC--CCC-------------- T ss_conf 439999999999999999997399987455886443---989----999875566333120--335-------------- Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCEEEEEE--E-CCHHHHHHHHHHHHHHHHCCCEEEEHHHHHHCCC Q ss_conf 9845886289999999999999999998719489998--0-8878899999997568876918996777430647 Q gi|254780558|r 322 MVADLYLDDQVDRDKIREKLKGLEEIARTTGQAIGVA--V-AFDESIEVISQWLQQEHVRDVSVVPLSCLAKLSS 393 (396) Q Consensus 322 ~~~dvfLD~~~~~~~I~~qL~~l~~~Ar~~G~AI~ig--h-~~p~Ti~~L~~w~~~l~~~gi~lVpvS~l~~~~~ 393 (396) +.......+. ..... --++|.-+... | ..+.+++.|...++.++++|.+++++++.+.... T Consensus 130 -------~~~~~~~~~~---~~~~~-~~~~~~~~l~~~~~~~~~~~~~~l~~~i~~~~~~G~~~~~l~~~l~~~~ 193 (216) T 2c71_A 130 -------IPSTTAEQRA---AAVIN-GVRDGTIILLHDVQPEPHPTPEALDIIIPTLKSRGYEFVTLTELFTLKG 193 (216) T ss_dssp -------CTTSCHHHHH---HHHHH-HCCTTBEEEEESCCSSSCCHHHHHHHHHHHHHHTTCEECCHHHHHHHHT T ss_pred -------CCCCCHHHHH---HHHHH-CCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEHHHHHCCCC T ss_conf -------7788688999---99983-7799958987058886656999999999999978999988899861769 No 9 >>2iw0_A Chitin deacetylase; hydrolase, chitin DE-N-acetylase, family 4 carbohydrate esterase; 1.81A {Colletotrichum lindemuthianum} (A:) Probab=96.63 E-value=0.05 Score=32.04 Aligned_cols=189 Identities=7% Similarity=-0.038 Sum_probs=116.0 Q ss_pred EEEEEECCCCCCCH--HHHHHHHHCCCCCEEEEEC------CCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCC Q ss_conf 58999737787716--8899998379350898708------987689999999985992999817665689877878554 Q gi|254780558|r 172 RIAIVVSGLGISQT--GTQRAINLLPANITLAFAS------NGNSLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYT 243 (396) Q Consensus 172 riAIVIddlG~~~~--~~~~ai~~LP~~vT~A~~P------~~~~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~ 243 (396) .|+|-.||- +... .....+.+.-.+.||-+.. ......+..+...+.|||+-.|- | .+. T Consensus 43 ~v~lTFDDG-~~~~~~~~~~iL~k~~~~aTfFv~~~~~~~~~~~~~~~~~~~~~~~g~ei~~Ht------~------~H~ 109 (254) T 2iw0_A 43 LVALTYDDG-PFTFTPQLLDILKQNDVRATFFVNGNNWANIEAGSNPDTIRRMRADGHLVGSHT------Y------AHP 109 (254) T ss_dssp EEEEEEESC-SCTTHHHHHHHHHHHTCCCEEEECSBSSSBTTSTTHHHHHHHHHHTTCEEEECC------S------SCC T ss_pred EEEEEECCC-CCHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHCHHHHHHHHHCCCEEECCC------C------CCC T ss_conf 799998189-805399999999987981999997886564435569999999985587884164------1------115 Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEEECC-CCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCEE Q ss_conf 4678998999999999998558935980012-300004989999999998506928997497632267898987099469 Q gi|254780558|r 244 LKVTQTVQQLLNRLRYSLRRGTGYFGVMNYR-GAMLLSNKESAEVIFKEFAKRGLLFFDDGSSPRNLTRVLAPKLNLPYM 322 (396) Q Consensus 244 L~~~~~~~~~~~~l~~~l~~~p~~vGvnNhm-Gs~~t~~~~~m~~vl~~l~~rgL~flDs~Ts~~Sva~~~A~~~gvp~~ 322 (396) -+..++.++...-+......+-...|..-.. -.-+-.... .+.+.+++.|.............. T Consensus 110 ~~~~~~~~~~~~ei~~~~~~l~~~~g~~~~~~~~P~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~------------ 174 (254) T 2iw0_A 110 DLNTLSSADRISQMRQLEEATRRIDGFAPKYMRAPYLSCDA---GCQGDLGGLGYHIIDTNLDTKDYE------------ 174 (254) T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHHSCEESEECCGGGCCCH---HHHHHHHHTTCEEECCSEECCTTT------------ T ss_pred CHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH---HHHHHHHHCCCEEEECCCCCCCCC------------ T ss_conf 45331768888999999999998619887325670678878---999999975998980774563145------------ Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHCCEEEEEEECC-HHHHHHHHHHHHHHHHCCCEEEEHHHHHHCC Q ss_conf 845886289999999999999999998719489998088-7889999999756887691899677743064 Q gi|254780558|r 323 VADLYLDDQVDRDKIREKLKGLEEIARTTGQAIGVAVAF-DESIEVISQWLQQEHVRDVSVVPLSCLAKLS 392 (396) Q Consensus 323 ~~dvfLD~~~~~~~I~~qL~~l~~~Ar~~G~AI~igh~~-p~Ti~~L~~w~~~l~~~gi~lVpvS~l~~~~ 392 (396) +.+...-...+......+.....+.|..+...+.. ..+.+.|.+.++.++++|+++|+++..+.-. T Consensus 175 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~l~~~G~~~~~~~~~~~~~ 241 (254) T 2iw0_A 175 ----NNKPETTHLSAEKFNNELSADVGANSYIVLSHDVHEQTVVSLTQKLIDTLKSKGYRAVTVGECLGDA 241 (254) T ss_dssp ----SCSTTTHHHHHHHHHHHSCSCGGGCCEEEEECTTSHHHHHTHHHHHHHHHHHTTCEECCHHHHTTCC T ss_pred ----CCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEHHHHHCCC T ss_conf ----7897416899999999997344799989994699765899999999999998799898879952644 No 10 >>3cl6_A PUUE allantoinase; URIC acid, nitrogen fixation, hydrolase; 1.58A {Pseudomonas fluorescens} PDB: 3cl7_A 3cl8_A 1z7a_A (A:1-42,A:96-308) Probab=96.52 E-value=0.048 Score=32.17 Aligned_cols=175 Identities=11% Similarity=-0.054 Sum_probs=103.9 Q ss_pred CCCEEEEECCC-CCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC-----CEE Q ss_conf 35089870898-768999999998599299981766568987787855446789989999999999985589-----359 Q gi|254780558|r 196 ANITLAFASNG-NSLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLKVTQTVQQLLNRLRYSLRRGTG-----YFG 269 (396) Q Consensus 196 ~~vT~A~~P~~-~~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~~~~~~~~~~~l~~~l~~~p~-----~vG 269 (396) -+.||-+.-.. ....+.++++++.||||-.|= | -+.-+..++.+++.+.|.+..+.+-. .+| T Consensus 42 ~kaTFFv~g~~~~~~p~~ir~l~~~GHEIG~Ht------~------~H~~~~~~s~~~~~~ei~~~~~~L~~~~G~~~~~ 109 (255) T 3cl6_A 42 NPLTIFAVAMAAQRHPDVIRAMVAAGHEICSHG------Y------RWIDYQYMDEAQEREHMLEAIRILTELTGERPLG 109 (255) T ss_dssp CCCEEEECHHHHHHCHHHHHHHHHTTCEEEECC------S------SSSCCTTCCHHHHHHHHHHHHHHHHHHHSSCCSE T ss_pred CCEEEEEEHHHHHHCHHHHHHHHHCCCCHHHCC------C------CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCE T ss_conf 647999888998779999999998689787723------6------6767110999999999999999999986989863 Q ss_pred EEECCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCEEEEEEE---------EC-CCCCHHHHHH Q ss_conf 8001230000498999999999850692899749763226789898709946984588---------62-8999999999 Q gi|254780558|r 270 VMNYRGAMLLSNKESAEVIFKEFAKRGLLFFDDGSSPRNLTRVLAPKLNLPYMVADLY---------LD-DQVDRDKIRE 339 (396) Q Consensus 270 vnNhmGs~~t~~~~~m~~vl~~l~~rgL~flDs~Ts~~Sva~~~A~~~gvp~~~~dvf---------LD-~~~~~~~I~~ 339 (396) .-...|+. +. .+...+++.|+.+..+......--.. .............. +. ...+.....+ T Consensus 110 fr~P~~~~---~~----~~~~~l~~~G~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (255) T 3cl6_A 110 WYTGRTGP---NT----RRLVMEEGGFLYDCDTYDDDLPYWEP-NNPTGKPHLVIPYTLDTNDMRFTQVQGFNKGDDFFE 181 (255) T ss_dssp ECCSSCCT---TH----HHHHHHHCCCSEECCCCCCSSCEECS-CCTTCSCCEECCCCSSSBGGGGGSSSCCSSHHHHHH T ss_pred ECCCCCCC---CH----HHHHHHHCCCEEECCCCCCCCCCCCC-CCCCCCEEEECCCCCCCCHHHHHCCCCCCCHHHHHH T ss_conf 51899986---51----67999971970442544787764322-478864355225655542455420367664579999 Q ss_pred HHHHHHHHHHHC-----CEEEEEEEC----CHHHHHHHHHHHHHHHHC-CCEEEEHHHHHH Q ss_conf 999999999871-----948999808----878899999997568876-918996777430 Q gi|254780558|r 340 KLKGLEEIARTT-----GQAIGVAVA----FDESIEVISQWLQQEHVR-DVSVVPLSCLAK 390 (396) Q Consensus 340 qL~~l~~~Ar~~-----G~AI~igh~----~p~Ti~~L~~w~~~l~~~-gi~lVpvS~l~~ 390 (396) .|..+....+++ +..+...|+ .+..+++|.+.+..+.++ |+.+|.++++++ T Consensus 182 ~l~~~i~~l~~~~~~~~~~~~l~~H~~~~~~~~~~~~l~~ll~~~~~~~~v~~~T~~ei~~ 242 (255) T 3cl6_A 182 YLKDAFDVLYAEGAEAPKMLSIGLHCRLIGRPARLAALQRFIEYAKSHEQVWFTRRVDIAR 242 (255) T ss_dssp HHHHHHHHHHHHTTTSCEEEEEEEEHHHHTSHHHHHHHHHHHHHHHTSSSEEECCHHHHHH T ss_pred HHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHHHH T ss_conf 9999999999985648986999879876698889999999999997289989987999999 No 11 >>2i5i_A UPF0249 protein EF_3048; hypothetical protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Enterococcus faecalis V583} (A:) Probab=96.51 E-value=0.06 Score=31.56 Aligned_cols=215 Identities=9% Similarity=-0.004 Sum_probs=141.4 Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHHC---CCCCEEEEECCCCCHHHHHHHHHHC--CCCEEEECCCC-----CCCCCCCC Q ss_conf 68658999737787716889999837---9350898708987689999999985--99299981766-----56898778 Q gi|254780558|r 169 SGARIAIVVSGLGISQTGTQRAINLL---PANITLAFASNGNSLDRWMKEAKKK--GQEAILQIPMQ-----AFDESYNE 238 (396) Q Consensus 169 ~~~riAIVIddlG~~~~~~~~ai~~L---P~~vT~A~~P~~~~~~~~~~~Ar~~--G~EvllhlPME-----p~~~~~~~ 238 (396) ...+|-|-.||+|++.... ++|.++ ..-=+.+++..++...+.++.+++. +..|=||+=+= |...+..- T Consensus 3 ~~~~lii~ADDfGl~~~vn-~gI~~~~~~G~l~s~slM~~~p~~~~a~~~~~~~~~~~~vGlHl~LT~g~~~p~~~~~~~ 81 (263) T 2i5i_A 3 SNKKLIINADDFGYTPAVT-QGIIEAHKRGVVTSTTALPTSPYFLEAXESARISAPTLAIGVHLTLTLNQAKPILPREXV 81 (263) T ss_dssp CCCEEEEEEEEETSSHHHH-HHHHHHHHSSSCCEEEECTTSTTHHHHHHHHHHHCTTCEEEEEECSCCTTCCCSSCTTTS T ss_pred CCCEEEEECCCCCCCHHHH-HHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCHHHC T ss_conf 7778999676677997789-999999987986587862588069999999997688876445677415778787883326 Q ss_pred ----------CCCCCCCCCCCHHHHHHHHHHHHHHCCC----CEEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEECCC Q ss_conf ----------7855446789989999999999985589----35980012300004989999999998506928997497 Q gi|254780558|r 239 ----------DDSYTLKVTQTVQQLLNRLRYSLRRGTG----YFGVMNYRGAMLLSNKESAEVIFKEFAKRGLLFFDDGS 304 (396) Q Consensus 239 ----------pGp~~L~~~~~~~~~~~~l~~~l~~~p~----~vGvnNhmGs~~t~~~~~m~~vl~~l~~rgL~flDs~T 304 (396) +....+....+.++++.-++.-++++-. -.-+..||+.-. -.+...+.+.+..+++|+-+..... T Consensus 82 psLvd~~G~f~~~~~~~~~~~~~~v~~El~aQi~~f~~~G~~P~hiDgH~hvh~-~~p~~~~~~~~la~~~~ip~~~~~~ 160 (263) T 2i5i_A 82 PSLVDEAGYFWHQSIFEEKVNLEEVYNEWDAQIISFXKSGRRPDHIDSHHNVHG-KNKKLLGVALALARKYQLPLRNASR 160 (263) T ss_dssp GGGBCTTSCBCCHHHHTTTCCHHHHHHHHHHHHHHHGGGSSCCSCEEEGGGGGG-SSHHHHHHHHHHHHHHTCCBCCCCC T ss_pred CCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCEECCCCHHC-CCHHHHHHHHHHHHHHCCCEEECCC T ss_conf 665187774315466550179999999999999999994899422005430002-6869999999999996989863411 Q ss_pred CCCCHHHHHHHHHCCCEE--EEEEEECCCCCHHHHHHHHHHHHHHHHHCCEEEEEEECC-H-H--------------HHH Q ss_conf 632267898987099469--845886289999999999999999998719489998088-7-8--------------899 Q gi|254780558|r 305 SPRNLTRVLAPKLNLPYM--VADLYLDDQVDRDKIREKLKGLEEIARTTGQAIGVAVAF-D-E--------------SIE 366 (396) Q Consensus 305 s~~Sva~~~A~~~gvp~~--~~dvfLD~~~~~~~I~~qL~~l~~~Ar~~G~AI~igh~~-p-~--------------Ti~ 366 (396) .... ........++... ....+.+...+.+...+-|..+. ....|.+..++||- + . -++ T Consensus 161 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~eim~HPg~~d~~l~~~~~~~~~R~~E~~ 237 (263) T 2i5i_A 161 SIET-KDYLELYQDVRTPDEXLYQFYDKAISTETILQLLDXVV--CSEGEVFEINCHPAFIDTILQNQSGYCXPRIREVE 237 (263) T ss_dssp SGGG-GGGGGGTTTSCCCSEEECCCSGGGCSHHHHHHHHHHHH--HSSCSEEEEEECCCCBCHHHHHHCSSCTHHHHHHH T ss_pred CCCC-CCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH--HCCCCEEEEEECCCCCCHHHHHCCCCCCCHHHHHH T ss_conf 0022-55688961788765304112255579999999999876--24888269996169898777636886432699999 Q ss_pred HH--HHHHHHHHHCCCEEEEHHHH Q ss_conf 99--99975688769189967774 Q gi|254780558|r 367 VI--SQWLQQEHVRDVSVVPLSCL 388 (396) Q Consensus 367 ~L--~~w~~~l~~~gi~lVpvS~l 388 (396) +| .++..-+++.||+|+.-++| T Consensus 238 ~L~s~~~~~~l~~~~i~l~~~~~l 261 (263) T 2i5i_A 238 ILTSQEVKEAIEERGILLANYESL 261 (263) T ss_dssp HHTCHHHHHHHHHTTCEEECGGGG T ss_pred HHCCHHHHHHHHHCCCEEECHHHC T ss_conf 974999999999879889538843 No 12 >>2c1i_A Peptidoglycan glcnac deacetylase; carbohydrate esterase, peptidoglycan deacetylase, metalloenzyme, D275N mutant, hydrolase; HET: MES; 1.35A {Streptococcus pneumoniae} (A:236-431) Probab=96.36 E-value=0.074 Score=30.99 Aligned_cols=178 Identities=9% Similarity=0.036 Sum_probs=111.7 Q ss_pred EEEEEECCCCCCCH--HHHHHHHHCCCCCEEEEEC-CCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCC Q ss_conf 58999737787716--8899998379350898708-98768999999998599299981766568987787855446789 Q gi|254780558|r 172 RIAIVVSGLGISQT--GTQRAINLLPANITLAFAS-NGNSLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLKVTQ 248 (396) Q Consensus 172 riAIVIddlG~~~~--~~~~ai~~LP~~vT~A~~P-~~~~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~~~ 248 (396) .|+|-+||-..+.. .-.+.+.+...+.||-+.. +.......++...+.||||-.|= | -+..+.++ T Consensus 2 ~V~lTFDDg~~~~~~~~il~~L~~~gi~atff~~~~~~~~~~~~~~~~~~~GheIg~Ht------~------~H~~~~~~ 69 (196) T 2c1i_A 2 VVALTFNDGPNPATTPQVLETLAKYDIKATFFVLGKNVSGNEDLVKRIKSEGHVVGNHS------W------SHPILSQL 69 (196) T ss_dssp EEEEEEESCCCTTTHHHHHHHHHHTTCCCEEEECGGGTTTCHHHHHHHHHTTCEEEECC------S------SCCCGGGS T ss_pred EEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEECHHHHHHCHHHHHHHHHCCCEEECCC------C------CCCCCCCC T ss_conf 89998718998574899999999879819999727856479999999998799898288------8------87470119 Q ss_pred CHHHHHHHHHHHHHHCCCCEEEEE--CCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCEEEEEE Q ss_conf 989999999999985589359800--123000049899999999985069289974976322678989870994698458 Q gi|254780558|r 249 TVQQLLNRLRYSLRRGTGYFGVMN--YRGAMLLSNKESAEVIFKEFAKRGLLFFDDGSSPRNLTRVLAPKLNLPYMVADL 326 (396) Q Consensus 249 ~~~~~~~~l~~~l~~~p~~vGvnN--hmGs~~t~~~~~m~~vl~~l~~rgL~flDs~Ts~~Sva~~~A~~~gvp~~~~dv 326 (396) +.++.++.+......+-...|.-. +..-....+.. ++..++..|..+.= ++.. T Consensus 70 ~~~~~~~ei~~~~~~l~~~~g~~~~~f~~p~g~~~~~----~~~~~~~~g~~~~~--~~~~------------------- 124 (196) T 2c1i_A 70 SLDEAKKQITDTEDVLTKVLGSSSKLMRPPYGAITDD----IRNSLDLSFIMWDV--DSLD------------------- 124 (196) T ss_dssp CHHHHHHHHHHHHHHHHHHHSCCCCEECCGGGCCCHH----HHHTSSCEEECCSE--ECCH------------------- T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHH----HHHHCCCEEEEEEE--CCCC------------------- T ss_conf 9999999999999999997599871796897767899----99975997999614--7765------------------- Q ss_pred EECCCCCHHHHHHHHHHHHHHHHHCCEEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEHHHHHHCC Q ss_conf 862899999999999999999987194899980887889999999756887691899677743064 Q gi|254780558|r 327 YLDDQVDRDKIREKLKGLEEIARTTGQAIGVAVAFDESIEVISQWLQQEHVRDVSVVPLSCLAKLS 392 (396) Q Consensus 327 fLD~~~~~~~I~~qL~~l~~~Ar~~G~AI~igh~~p~Ti~~L~~w~~~l~~~gi~lVpvS~l~~~~ 392 (396) .+......+...... ..+.+..+.....+..|.+.|...+..++++|++++++++++... T Consensus 125 --~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~~~l~~~~~~~ 184 (196) T 2c1i_A 125 --WKSKNEASILTEIQH----QVANGSIVLMHDIHSPTVNALPRVIEYLKNQGYTFVTIPEMLNTR 184 (196) T ss_dssp --HHHCCHHHHHHHHHH----HCCTTEEEEEETTSHHHHHHHHHHHHHHHHTTCEECCHHHHHGGG T ss_pred --CCCCCHHHHHHHHHH----CCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEHHHHHCCC T ss_conf --676999999999983----889994999848975099999999999997899998948956777 No 13 >>1v6t_A Hypothetical UPF0271 protein PH0986; TIM-barrel, lactam utilization protein, structural genomics; 1.70A {Pyrococcus horikoshii OT3} (A:) Probab=96.02 E-value=0.11 Score=29.90 Aligned_cols=199 Identities=15% Similarity=0.131 Sum_probs=135.4 Q ss_pred CCCCCC----HHHHHHHHHCCCCCEEEEECCCCC------HHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCC Q ss_conf 778771----688999983793508987089876------8999999998599299981766568987787855446789 Q gi|254780558|r 179 GLGISQ----TGTQRAINLLPANITLAFASNGNS------LDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLKVTQ 248 (396) Q Consensus 179 dlG~~~----~~~~~ai~~LP~~vT~A~~P~~~~------~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~~~ 248 (396) |||.+- .+..++|+.+ ||-|=+.-+=+ -.+.++.|.+.|-.|=-|- +||+.+ |=+--...+ T Consensus 8 DlGEgfg~~~~g~D~~lmp~---ItsaNIACG~HAGDp~~M~~tv~lA~~~gV~iGAHP-----gypD~~-gFGRr~m~~ 78 (255) T 1v6t_A 8 DLGESFGRYKLGLDEEVMKY---ITSANVACGWHAGDPLVMRKTVRLAKENDVQVGAHP-----GYPDLM-GFGRRYMKL 78 (255) T ss_dssp EECCCBTTBCCSCHHHHTTT---CSEEEEECSSSSCCHHHHHHHHHHHHHTTCEEEEEC-----CCSCTT-TTTCSCCCC T ss_pred CCCCCCCCCCCCCCHHHHHH---HHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCC-----CCCCCC-CCCCCCCCC T ss_conf 17988788788883899867---535888607356779999999999998499712799-----987733-367554666 Q ss_pred CHHHHHHHHHHHHHHCCC--------CEEEEEC--CCCCCCCCHHHHHHHHHHHHCC--CCEEEECCCCCCCHHHHHHHH Q ss_conf 989999999999985589--------3598001--2300004989999999998506--928997497632267898987 Q gi|254780558|r 249 TVQQLLNRLRYSLRRGTG--------YFGVMNY--RGAMLLSNKESAEVIFKEFAKR--GLLFFDDGSSPRNLTRVLAPK 316 (396) Q Consensus 249 ~~~~~~~~l~~~l~~~p~--------~vGvnNh--mGs~~t~~~~~m~~vl~~l~~r--gL~flDs~Ts~~Sva~~~A~~ 316 (396) +++|+.+.+.+-+..+.. ...|--| +......|+...+.+++.++.. +|.++ ..+.|.-.+.|++ T Consensus 79 s~~el~~~v~yQigaL~~~a~~~g~~l~hVKPHGALYn~~~~d~~la~ai~~ai~~~~~~l~l~---~~~~s~~~~~a~~ 155 (255) T 1v6t_A 79 TPEEARNYILYQVGALYAFAKAEGLELQHVKPHGALYNAMVKEEDLARAVIEGILDFDKDLILV---TLSNSRVADIAEE 155 (255) T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTCCEEEECCCHHHHHHHHHCHHHHHHHHHHHHHHCTTCEEE---EETTCHHHHHHHH T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCEEE---ECCCCHHHHHHHH T ss_conf 8799999999999999999998499246751328888777548999999999999608774166---3387358999986 Q ss_pred HCCCEEEEEEEECCC-----------------CCHHHHHHHHHHHHHHHH---HCCEEEE-------EEECCHHHHHHHH Q ss_conf 099469845886289-----------------999999999999999998---7194899-------9808878899999 Q gi|254780558|r 317 LNLPYMVADLYLDDQ-----------------VDRDKIREKLKGLEEIAR---TTGQAIG-------VAVAFDESIEVIS 369 (396) Q Consensus 317 ~gvp~~~~dvfLD~~-----------------~~~~~I~~qL~~l~~~Ar---~~G~AI~-------igh~~p~Ti~~L~ 369 (396) .|+++.. ..|-|.. .|++.+.+|..++.+--+ -.|.-|- +-.-.|..++.++ T Consensus 156 ~Gl~~~~-E~FADR~Y~~dG~LvpR~~~gAvi~d~~~~~~q~~~~~~~g~V~t~~G~~i~~~adTiCvHgD~p~Av~~a~ 234 (255) T 1v6t_A 156 MGLKVAH-EVFADRAYNPDGTLVPRGRPGAVIEDKEEIAERVISMVKDGGIRAINGEWVDLKVDTICVHGDNPKAVEITS 234 (255) T ss_dssp HTCCEEE-EECTTBCBCTTSCBCC-----CBCCCHHHHHHHHHHHHHHSEEECTTSCEEECCCSEEECCCSSHHHHHHHH T ss_pred CCCCEEE-EEEEEEEECCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEECCCCEEECCCCEEEECCCCHHHHHHHH T ss_conf 1986366-775430099999886513442336889999999999986798891389887516898998999978999999 Q ss_pred HHHHHHHHCCCEEEEHHHHHH Q ss_conf 997568876918996777430 Q gi|254780558|r 370 QWLQQEHVRDVSVVPLSCLAK 390 (396) Q Consensus 370 ~w~~~l~~~gi~lVpvS~l~~ 390 (396) ..-..|++.||++.|+++++| T Consensus 235 ~ir~~L~~~gi~i~~~~~~l~ 255 (255) T 1v6t_A 235 YIRKVLEEEGVKIVPMKEFIR 255 (255) T ss_dssp HHHHHHHHTTCEECCGGGTC- T ss_pred HHHHHHHHCCCEEECHHHHCC T ss_conf 999999988999972788519 No 14 >>2dfa_A Hypothetical UPF0271 protein TTHB195; lactam utilization protein, structural genomics, NPPSFA; 1.90A {Thermus thermophilus HB8} (A:) Probab=94.71 E-value=0.3 Score=27.16 Aligned_cols=195 Identities=14% Similarity=0.096 Sum_probs=129.3 Q ss_pred CCCCCCC----HHHHHHHHHCCCCCEEEEECC---CC---CHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCC Q ss_conf 3778771----688999983793508987089---87---6899999999859929998176656898778785544678 Q gi|254780558|r 178 SGLGISQ----TGTQRAINLLPANITLAFASN---GN---SLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLKVT 247 (396) Q Consensus 178 ddlG~~~----~~~~~ai~~LP~~vT~A~~P~---~~---~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~~ 247 (396) -|||.+. .+..++|+.| ||-|=+.- +- .-.+.++.|.+.|-.|=.|- +||+.. |-+=-... T Consensus 7 ~DlGE~fg~~~~g~D~~lm~~---ItsaNIACG~HAGDp~~M~~tv~lA~~~gV~IGAHP-----sypD~~-gFGRr~m~ 77 (250) T 2dfa_A 7 ADAGESYGAFAYGHDREIFPL---VSSANLACGFHGGSPGRILEAVRLAKAHGVAVGAHP-----GFPDLV-GFGRREMA 77 (250) T ss_dssp EEECCCBTTBCCSCHHHHTTT---CSEEEEECSSSSCCHHHHHHHHHHHHHTTCEEEEEC-----CCSCTT-TTTCSCCC T ss_pred CCCCCCCCCCCCCCHHHHHHH---HHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCC-----CCCCHH-HCCCCCCC T ss_conf 116988788787880999977---635888606346779999999999998197203688-----987354-44887778 Q ss_pred CCHHHHHHHHHHHHHHCCCCEE----EEECC------CCCCCCCHHHHHHHHHHHHCC--CCEEEECCCCCCCHHHHHHH Q ss_conf 9989999999999985589359----80012------300004989999999998506--92899749763226789898 Q gi|254780558|r 248 QTVQQLLNRLRYSLRRGTGYFG----VMNYR------GAMLLSNKESAEVIFKEFAKR--GLLFFDDGSSPRNLTRVLAP 315 (396) Q Consensus 248 ~~~~~~~~~l~~~l~~~p~~vG----vnNhm------Gs~~t~~~~~m~~vl~~l~~r--gL~flDs~Ts~~Sva~~~A~ 315 (396) ++++|+.+.+..-+..+-+..- -.+|. ......|+...+.+++.++.. +|.++ ..+.|.-.+.|+ T Consensus 78 ~~~~el~~~i~yQigaL~~~~~~~g~~l~hVKPHGALYn~~~~d~~lA~ai~~ai~~~d~~l~l~---~~~~s~~~~~a~ 154 (250) T 2dfa_A 78 LSPEEVYADVLYQIGALSAFLKAEGLPLHHVKPHGALYLKACRDRETARAIALAVKAFDPGLPLV---VLPGTVYEEEAR 154 (250) T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTTCCCCCBCCCHHHHHHHHHCHHHHHHHHHHHHHHCTTCCEE---ECTTSHHHHHHH T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCEEE---ECCCHHHHHHHH T ss_conf 99899999999999999999998399403202437877567537899999999998428873588---438626899887 Q ss_pred HHCCCEEEEEEEECCC-----------------CCHHHHHHHHHHHHHHHH---HCCEEE-------EEEECCHHHHHHH Q ss_conf 7099469845886289-----------------999999999999999998---719489-------9980887889999 Q gi|254780558|r 316 KLNLPYMVADLYLDDQ-----------------VDRDKIREKLKGLEEIAR---TTGQAI-------GVAVAFDESIEVI 368 (396) Q Consensus 316 ~~gvp~~~~dvfLD~~-----------------~~~~~I~~qL~~l~~~Ar---~~G~AI-------~igh~~p~Ti~~L 368 (396) +.|+++.. .+|-|-. .|++.+.+|..++.+--+ -.|.-| -+-.-.|..++.+ T Consensus 155 ~~Gl~~~~-E~FADR~Y~~dG~Lv~R~~~gAvi~d~~~~~~~~~~~~~~g~V~ti~G~~i~~~adTiCvHgD~p~Av~~a 233 (250) T 2dfa_A 155 KAGLRVVL-EAFPERAYLRSGQLAPRSMPGSWITDPEEAARRALRMVLEGKVEALDGGEVAVRADTLCIHGDNPNAPEVA 233 (250) T ss_dssp HTTCCEEE-EECTTBCBCTTSSBCCTTSTTCBCCCHHHHHHHHHHHHHTSEEEBTTSSEEECCCSEEEEC---CCHHHHH T ss_pred HCCCCEEE-EEEECCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEECCCCEEECCCCEEEECCCCHHHHHHH T ss_conf 55983677-77403338899988985065320248189999999999779879068988624689899899997899999 Q ss_pred HHHHHHHHHCCCEEEEH Q ss_conf 99975688769189967 Q gi|254780558|r 369 SQWLQQEHVRDVSVVPL 385 (396) Q Consensus 369 ~~w~~~l~~~gi~lVpv 385 (396) +..-..|++.||++.|+ T Consensus 234 ~~ir~~L~~~gi~i~~~ 250 (250) T 2dfa_A 234 RAVREALEQAGVEVRAF 250 (250) T ss_dssp HHHHHHHHTTTCEECCC T ss_pred HHHHHHHHHCCCEEECC T ss_conf 99999999886978169 No 15 >>3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A* (A:) Probab=86.51 E-value=2.2 Score=21.75 Aligned_cols=144 Identities=14% Similarity=0.064 Sum_probs=96.6 Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCEE Q ss_conf 44678998999999999998558935980012300004989999999998506928997497632267898987099469 Q gi|254780558|r 243 TLKVTQTVQQLLNRLRYSLRRGTGYFGVMNYRGAMLLSNKESAEVIFKEFAKRGLLFFDDGSSPRNLTRVLAPKLNLPYM 322 (396) Q Consensus 243 ~L~~~~~~~~~~~~l~~~l~~~p~~vGvnNhmGs~~t~~~~~m~~vl~~l~~rgL~flDs~Ts~~Sva~~~A~~~gvp~~ 322 (396) .....++.+++.+.+.+...... ..+.-..|.-+..+...+..+++.++..+..+.-+.+...---...-++.|+-.. T Consensus 79 ~~~~~~~~e~i~~~i~~~~~~g~--~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~v 156 (348) T 3iix_A 79 LKRYRMTPEEIVERARLAVQFGA--KTIVLQSGEDPYXMPDVISDIVKEIKKMGVAVTLSLGEWPREYYEKWKEAGADRY 156 (348) T ss_dssp SCCCBCCHHHHHHHHHHHHHTTC--SEEEEEESCCGGGTTHHHHHHHHHHHTTSCEEEEECCCCCHHHHHHHHHHTCCEE T ss_pred CCCEECCHHHHHHHHHHHHHCCC--CEEEEECCCCCCCCHHHHHHHHHHHHCCCHHCCCCCCCHHHHHHHHHHHHHCEEE T ss_conf 65231457889999999997188--2565402652345278888998864012010023444116899999987426278 Q ss_pred EEEEEECCCCCHHHHH-----HHHHHHHHHHHHCCEEEEEEEC--C-HHHHHHHHHHHHHHHHCCCEEEEHHHH Q ss_conf 8458862899999999-----9999999999871948999808--8-788999999975688769189967774 Q gi|254780558|r 323 VADLYLDDQVDRDKIR-----EKLKGLEEIARTTGQAIGVAVA--F-DESIEVISQWLQQEHVRDVSVVPLSCL 388 (396) Q Consensus 323 ~~dvfLD~~~~~~~I~-----~qL~~l~~~Ar~~G~AI~igh~--~-p~Ti~~L~~w~~~l~~~gi~lVpvS~l 388 (396) .-.+---+......+. .+..++.+.+++.|..+.+... . .+|.+-+.+.+..+.+.|+..+.++.+ T Consensus 157 ~i~les~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~i~g~p~e~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (348) T 3iix_A 157 LLRHETANPVLHRKLRPDTSFENRLNXLLTLKELGYETGAGSMVGLPGQTIDDLVDDLLFLKEHDFDMVGIGPF 230 (348) T ss_dssp ECCCBCSCHHHHHHHSTTSCHHHHHHHHHHHHHTTCEEEECBEESCTTCCHHHHHHHHHHHHHHTCSEECCEEC T ss_pred EECCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCEECCCEE T ss_conf 84444233455210000332015677777878765312410576277656688888899998755334055101 No 16 >>1yx1_A Hypothetical protein PA2260; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.80A {Pseudomonas aeruginosa PAO1} (A:) Probab=77.82 E-value=1.4 Score=22.97 Aligned_cols=82 Identities=21% Similarity=0.096 Sum_probs=45.4 Q ss_pred CCCCHHHHHHHHHHCCCCEEE-ECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHH Q ss_conf 987689999999985992999-8176656898778785544678998999999999998558935980012300004989 Q gi|254780558|r 205 NGNSLDRWMKEAKKKGQEAIL-QIPMQAFDESYNEDDSYTLKVTQTVQQLLNRLRYSLRRGTGYFGVMNYRGAMLLSNKE 283 (396) Q Consensus 205 ~~~~~~~~~~~Ar~~G~Evll-hlPMEp~~~~~~~pGp~~L~~~~~~~~~~~~l~~~l~~~p~~vGvnNhmGs~~t~~~~ 283 (396) ......++.+.|..-|...+. |...+.. .+..+.+.....+..-.+.+-||.+.-. .... T Consensus 82 ~~~~~~~~i~~a~~lg~~~i~~~~~~~~~------------------~~~l~~l~~~a~~~Gv~l~iE~~~~~~~-~~~~ 142 (264) T 1yx1_A 82 LNPELEPTLRRAEACGAGWLKVSLGLLPE------------------QPDLAALGRRLARHGLQLLVENDQTPQG-GRIE 142 (264) T ss_dssp BCTTHHHHHHHHHHTTCSEEEEEEECCCS------------------SCCHHHHHHHHTTSSCEEEEECCSSHHH-HCHH T ss_pred HHHHHHHHHHHHHHCCCCEEEECCCCCCC------------------CCCHHHHHHHHHHCCCEEEEEECCCCCC-CCHH T ss_conf 37999999999997498989986697410------------------1328999999985398899984898376-8888 Q ss_pred HHHHH--HHHHHCCCCEE-EECCCC Q ss_conf 99999--99985069289-974976 Q gi|254780558|r 284 SAEVI--FKEFAKRGLLF-FDDGSS 305 (396) Q Consensus 284 ~m~~v--l~~l~~rgL~f-lDs~Ts 305 (396) ....+ +......++.+ +|.... T Consensus 143 ~~~~~~~~~~~~~~~lg~~~D~~H~ 167 (264) T 1yx1_A 143 VLERFFRLAERQQLDLAXTFDIGNW 167 (264) T ss_dssp HHHHHHHHHHHTTCSEEEEEETTGG T ss_pred HHHHHHHHHHCCCCCEEEEECCHHH T ss_conf 9999999853689846999445225 No 17 >>2p8b_A Mandelate racemase/muconate lactonizing enzyme family protein; enolase superfamily, prediction of function; HET: NSK; 1.70A {Bacillus cereus atcc 14579} PDB: 2p88_A* 2p8c_A* (A:123-348) Probab=76.69 E-value=4.9 Score=19.48 Aligned_cols=145 Identities=12% Similarity=0.094 Sum_probs=100.2 Q ss_pred CCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHH Q ss_conf 87689999999985992999817665689877878554467899899999999999855893598001230000498999 Q gi|254780558|r 206 GNSLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLKVTQTVQQLLNRLRYSLRRGTGYFGVMNYRGAMLLSNKESA 285 (396) Q Consensus 206 ~~~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~~~~~~~~~~~l~~~l~~~p~~vGvnNhmGs~~t~~~~~m 285 (396) -....+.++.+.++|+..+ -+.++.+..+...+++.....+...+-+.=-....+|.. ... T Consensus 20 ~~~~~~~~~~~~~~G~~~~------------------Kik~g~~~~~d~~~v~~~r~~~g~~~~l~iDan~~~t~~-e~a 80 (226) T 2p8b_A 20 PENMAEEAASMIQKGYQSF------------------KMKVGTNVKEDVKRIEAVRERVGNDIAIRVDVNQGWKNS-ANT 80 (226) T ss_dssp HHHHHHHHHHHHHTTCCEE------------------EEECCSCHHHHHHHHHHHHHHHCTTSEEEEECTTTTBSH-HHH T ss_pred CHHHHHHHHHHHHCCCCEE------------------EEECCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCH-HHH T ss_conf 0356799999986798689------------------986589979999999999998599862765045576406-999 Q ss_pred HHHHHHHHCCCCEEEECCCCCCCH--HHHHHHHHCCCEEEEEEEECCCCCH---------------HHH--HHHHHHHHH Q ss_conf 999999850692899749763226--7898987099469845886289999---------------999--999999999 Q gi|254780558|r 286 EVIFKEFAKRGLLFFDDGSSPRNL--TRVLAPKLNLPYMVADLYLDDQVDR---------------DKI--REKLKGLEE 346 (396) Q Consensus 286 ~~vl~~l~~rgL~flDs~Ts~~Sv--a~~~A~~~gvp~~~~dvfLD~~~~~---------------~~I--~~qL~~l~~ 346 (396) ..+++.|...++.|+-.-...... -..+.+..++|.+--..+.+...-. ..+ .....++.. T Consensus 81 ~~~~~~l~~~~~~~iEeP~~~~d~~~~~~l~~~~~~pia~~E~~~~~~~~~~~i~~~a~d~~~~d~~~~GGi~~~~~i~~ 160 (226) T 2p8b_A 81 LTALRSLGHLNIDWIEQPVIADDIDAMAHIRSKTDLPLMIDEGLKSSREMRQIIKLEAADKVNIKLMKCGGIYPAVKLAH 160 (226) T ss_dssp HHHHHTSTTSCCSCEECCBCTTCHHHHHHHHHTCCSCEEESTTCCSHHHHHHHHHHTCCSEEEECHHHHTSHHHHHHHHH T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCHHHEEEECCCCCCEECCCCCCCHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHH T ss_conf 99998533307731003434013300004310233340023320002344332114656605761366752459989878 Q ss_pred HHHHCCEEEEEEECCH--HHHHHHH Q ss_conf 9987194899980887--8899999 Q gi|254780558|r 347 IARTTGQAIGVAVAFD--ESIEVIS 369 (396) Q Consensus 347 ~Ar~~G~AI~igh~~p--~Ti~~L~ 369 (396) +|+++|.-+.+++... .+..+.. T Consensus 161 ~A~~~gv~~~~~~~~~~~i~~~a~l 185 (226) T 2p8b_A 161 QAEMAGIECQVGSMVESSVASSAGF 185 (226) T ss_dssp HHHHTTCEEEECCSSCCHHHHHHHH T ss_pred HHHHHCEEEECCCCCCCHHHHHHHH T ss_conf 9987231454078764589999999 No 18 >>2nql_A AGR_PAT_674P, isomerase/lactonizing enzyme; enolase, structural genomics, protein structure initiative, PSI, nysgxrc; 1.80A {Agrobacterium tumefaciens str} (A:145-376) Probab=76.14 E-value=5.1 Score=19.38 Aligned_cols=152 Identities=7% Similarity=-0.038 Sum_probs=95.5 Q ss_pred EEEECCCCC---HHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC Q ss_conf 987089876---89999999985992999817665689877878554467899899999999999855893598001230 Q gi|254780558|r 200 LAFASNGNS---LDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLKVTQTVQQLLNRLRYSLRRGTGYFGVMNYRGA 276 (396) Q Consensus 200 ~A~~P~~~~---~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~~~~~~~~~~~l~~~l~~~p~~vGvnNhmGs 276 (396) .+...+..+ ..+.++.++++|+-.+ -+.++.+.++...+++...+.+..-+-+.=-... T Consensus 12 y~~~~~~~~p~~~~~~~~~~~~~G~~~~------------------KiKig~~~~~d~~~i~~ir~~~g~~~~l~~Dan~ 73 (232) T 2nql_A 12 YVSGLPERTLKARGELAKYWQDRGFNAF------------------KFATPVADDGPAAEIANLRQVLGPQAKIAADMHW 73 (232) T ss_dssp EEECCCCSSHHHHHHHHHHHHHTTCCEE------------------EEEGGGCTTCHHHHHHHHHHHHCTTSEEEEECCS T ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCCCC------------------CCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHC T ss_conf 3333222220367888888874265223------------------4554456432599999998742872034666402 Q ss_pred CCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCHH--HHHHHHHCCCEEEEEEEECCCCCHHHH----------------- Q ss_conf 0004989999999998506928997497632267--898987099469845886289999999----------------- Q gi|254780558|r 277 MLLSNKESAEVIFKEFAKRGLLFFDDGSSPRNLT--RVLAPKLNLPYMVADLYLDDQVDRDKI----------------- 337 (396) Q Consensus 277 ~~t~~~~~m~~vl~~l~~rgL~flDs~Ts~~Sva--~~~A~~~gvp~~~~dvfLD~~~~~~~I----------------- 337 (396) .++-+ .-..+++.|.+.++.|+..-..+.... ..+.+..++|.+.-..+ .+.... T Consensus 74 ~~~~~--~a~~~~~~l~~~~l~~iEeP~~~~~~~~~~~l~~~~~~pIa~~E~~----~~~~~~~~~~~~g~~~~~~~~~~ 147 (232) T 2nql_A 74 NQTPE--RALELIAEMQPFDPWFAEAPVWTEDIAGLEKVSKNTDVPIAVGEEW----RTHWDMRARIERCRIAIVQPEMG 147 (232) T ss_dssp CSCHH--HHHHHHHHHGGGCCSCEECCSCTTCHHHHHHHHTSCCSCEEECTTC----CSHHHHHHHHTTSCCSEECCCHH T ss_pred CCHHH--HHHHHHHHHCCCCCCCCCCCCCHHHCCHHHHHHHCCCCCCCCCCEE----EEEECCCCCCCCCCCCCCCCCHH T ss_conf 31016--8999998710445211578856321101356886067760146257----76302221112420000455101 Q ss_pred ---HHHHHHHHHHHHHCCEEEEEEEC--CHHHHHHHHHHHHHH Q ss_conf ---99999999999871948999808--878899999997568 Q gi|254780558|r 338 ---REKLKGLEEIARTTGQAIGVAVA--FDESIEVISQWLQQE 375 (396) Q Consensus 338 ---~~qL~~l~~~Ar~~G~AI~igh~--~p~Ti~~L~~w~~~l 375 (396) .....+...+|+++|.-+.++.. .+.++.+...+.... T Consensus 148 ~GGi~~~l~i~~~a~~~gi~~~~~~~~~~~i~~~a~~~laa~~ 190 (232) T 2nql_A 148 HKGITNFIRIGALAAEHGIDVIPHATVGAGIFLAASLQASSTL 190 (232) T ss_dssp HHCHHHHHHHHHHHHHHTCEECCCCCSSCSHHHHHHHHHHTTC T ss_pred HHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHC T ss_conf 2138999988999998797599648861399999999999854 No 19 >>2a5h_A L-lysine 2,3-aminomutase; radical SAM, four-iron-four-sulfur cluster, 4Fe4S, FS4, SAM, S-adenosylmethionine, alpha-beta channel; HET: SAM LYS PLP; 2.10A {Clostridium subterminale} (A:95-342) Probab=73.69 E-value=3.9 Score=20.13 Aligned_cols=144 Identities=13% Similarity=0.084 Sum_probs=86.4 Q ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCC-CEEEECCCCCCCHHHH-HHHHHCCCEEE Q ss_conf 789989999999999985589359800123000049899999999985069-2899749763226789-89870994698 Q gi|254780558|r 246 VTQTVQQLLNRLRYSLRRGTGYFGVMNYRGAMLLSNKESAEVIFKEFAKRG-LLFFDDGSSPRNLTRV-LAPKLNLPYMV 323 (396) Q Consensus 246 ~~~~~~~~~~~l~~~l~~~p~~vGvnNhmGs~~t~~~~~m~~vl~~l~~rg-L~flDs~Ts~~Sva~~-~A~~~gvp~~~ 323 (396) .+....+....+...+....+...|.=.-|.-+......+..+++.+++.+ ...+.-.++....-.. +.....--... T Consensus 48 ~~~~~~e~i~~~~~~~~~~~~~~~i~~~ggep~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (248) T 2a5h_A 48 DDSXPXERIDKAIDYIRNTPQVRDVLLSGGDALLVSDETLEYIIAKLREIPHVEIVRIGSRTPVVLPQRITPELVNXLKK 127 (248) T ss_dssp SSBCCHHHHHHHHHHHHTCTTCCEEEEEESCTTSSCHHHHHHHHHHHHTSTTCCEEEEECSHHHHCGGGCCHHHHHHHGG T ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHC T ss_conf 34214999999999998389836999856985626889999999999708997548887055424616568999985302 Q ss_pred EEEEEC--CCCCHHHHHHHHHHHHHHHHHCCEEEEEEEC----CHHHHHHHHHHHHHHHHCCCEEEEHHHHH Q ss_conf 458862--8999999999999999999871948999808----87889999999756887691899677743 Q gi|254780558|r 324 ADLYLD--DQVDRDKIREKLKGLEEIARTTGQAIGVAVA----FDESIEVISQWLQQEHVRDVSVVPLSCLA 389 (396) Q Consensus 324 ~dvfLD--~~~~~~~I~~qL~~l~~~Ar~~G~AI~igh~----~p~Ti~~L~~w~~~l~~~gi~lVpvS~l~ 389 (396) .++..| ..........+..+..+.++++|.-+.+-.. ..+|++-+.+++..+...|+..+.+..+. T Consensus 128 i~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~v~i~~~~ 199 (248) T 2a5h_A 128 YHPVWLNTHFNHPNEITEESTRACQLLADAGVPLGNQSVLLRGVNDCVHVXKELVNKLVKIRVRPYYIYQCD 199 (248) T ss_dssp GCSEEEEECCCSGGGCCHHHHHHHHHHHHTTCCEEEEEECCTTTTCSHHHHHHHHHHHHHTTEEEEEEECCC T ss_pred CCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEECEEECCCCCCHHHHHHHHHHHHHCCEEEEEEEECC T ss_conf 664899721476544303489999999977986987461678615877899999999984883899976126 No 20 >>2q02_A Putative cytoplasmic protein; NP_463296.1, structural genomics, joint center for structural genomics, JCSG; 2.40A {Salmonella typhimurium LT2} (A:) Probab=73.62 E-value=5.9 Score=18.98 Aligned_cols=104 Identities=11% Similarity=-0.010 Sum_probs=59.4 Q ss_pred HHHHHHCCCCCEEEEECCC---------CCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH Q ss_conf 9999837935089870898---------7689999999985992999817665689877878554467899899999999 Q gi|254780558|r 188 QRAINLLPANITLAFASNG---------NSLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLKVTQTVQQLLNRLR 258 (396) Q Consensus 188 ~~ai~~LP~~vT~A~~P~~---------~~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~~~~~~~~~~~l~ 258 (396) .+++.+....++.--.++. ....++++.|+.-|-..+...+.. .......+++.+.|+ T Consensus 57 ~~~l~~~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~lg~~~i~~~~~~-------------~~~~~~~~~~~~~l~ 123 (272) T 2q02_A 57 RNLAEKYGLEIVTINAVYPFNQLTEEVVKKTEGLLRDAQGVGARALVLCPLN-------------DGTIVPPEVTVEAIK 123 (272) T ss_dssp HHHHHHTTCEEEEEEEETTTTSCCHHHHHHHHHHHHHHHHHTCSEEEECCCC-------------SSBCCCHHHHHHHHH T ss_pred HHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCC-------------CCCCHHHHHHHHHHH T ss_conf 9999983996688611367778558899989999999998628789996388-------------875024999999999 Q ss_pred HHHHHCCC---CEEEEECCC-CCCCCCHHHHHHHHHHHHCCCCEEEECCC Q ss_conf 99985589---359800123-00004989999999998506928997497 Q gi|254780558|r 259 YSLRRGTG---YFGVMNYRG-AMLLSNKESAEVIFKEFAKRGLLFFDDGS 304 (396) Q Consensus 259 ~~l~~~p~---~vGvnNhmG-s~~t~~~~~m~~vl~~l~~rgL~flDs~T 304 (396) +....... .+.+-||.+ .-+..+...+..+++.+..+--+.+|-.- T Consensus 124 ~l~~~a~~~Gv~~~~E~~~~~~~~~~~~~~~~~l~~~~~~~~gi~~D~~h 173 (272) T 2q02_A 124 RLSDLFARYDIQGLVEPLGFRVSSLRSAVWAQQLIREAGSPFKVLLDTFH 173 (272) T ss_dssp HHHHHHHTTTCEEEECCCCSTTCSCCCHHHHHHHHHHHTCCCEEEEEHHH T ss_pred HHHHHHHHCCEEEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHH T ss_conf 99987521483899984676676448899999999860997233120156 No 21 >>2g0w_A LMO2234 protein; 16411704, structural genomics, PSI, protein structure initiative, joint center for structural genomics, JCSG; HET: MSE PG4; 1.70A {Listeria monocytogenes} (A:) Probab=70.55 E-value=6.9 Score=18.54 Aligned_cols=55 Identities=9% Similarity=0.031 Sum_probs=28.9 Q ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEEC Q ss_conf 9989999999999985589359800123000049899999999985069289974 Q gi|254780558|r 248 QTVQQLLNRLRYSLRRGTGYFGVMNYRGAMLLSNKESAEVIFKEFAKRGLLFFDD 302 (396) Q Consensus 248 ~~~~~~~~~l~~~l~~~p~~vGvnNhmGs~~t~~~~~m~~vl~~l~~rgL~flDs 302 (396) ..-++..+.|...+...-.+--.....-.-+..+...+..+++.+...+++++=+ T Consensus 130 ~~~~~~~~~l~~~~~~a~~~gi~l~~e~~~~~~~~~~~~~l~~~~~~~~~gi~~D 184 (296) T 2g0w_A 130 IPEEQIIVALGELCDRAEELIIGLEFXPYSGVADLQAAWRVAEACGRDNAQLICD 184 (296) T ss_dssp CCHHHHHHHHHHHHHHHTTSEEEEECCTTSSSCSHHHHHHHHHHHTCTTEEEEEE T ss_pred HHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHHHCCEEEEECC T ss_conf 2465899999999998864686886514777899999999999740532688414 No 22 >>1xw8_A UPF0271 protein YBGL; NESG, northeast structural genomics consortium, structural genomics, protein structure initiative, PSI, X-RAY; 2.00A {Escherichia coli} (A:1-162,A:212-221) Probab=69.86 E-value=7.2 Score=18.45 Aligned_cols=143 Identities=12% Similarity=0.052 Sum_probs=96.8 Q ss_pred CCCCCCCHHHHHHHHHCCCCCEEEEECCCCC---HHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHH Q ss_conf 3778771688999983793508987089876---8999999998599299981766568987787855446789989999 Q gi|254780558|r 178 SGLGISQTGTQRAINLLPANITLAFASNGNS---LDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLKVTQTVQQLL 254 (396) Q Consensus 178 ddlG~~~~~~~~ai~~LP~~vT~A~~P~~~~---~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~~~~~~~~~ 254 (396) -|||.|.. ..++|+.+=--...|-==++-+ -.+.++.|.+.|-.|=-|- +||+.+ |=+--...++++|+. T Consensus 7 ~DlGEg~g-~D~~lmp~ItsANIACG~HAGDp~~M~~tv~lA~~~gV~IGAHP-----gypD~~-gFGRr~m~~~~~el~ 79 (172) T 1xw8_A 7 ADLGEGCA-SDAELLTLVSSANIACGFHAGDAQIXQACVREAIKNGVAIGAHP-----SFPDRE-NFGRSAXQLPPETVY 79 (172) T ss_dssp EEESSSCS-CHHHHHHHCSEEEEECSSSSCCHHHHHHHHHHHHHHTCEEEEEC-----CCC--------CCCCCCHHHHH T ss_pred CCCCCCCC-CHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCC-----CCCCHH-HCCCCCCCCCHHHHH T ss_conf 45788868-88999867536898607457789999999999998399624789-----988633-248667889999999 Q ss_pred HHHHHHHHHCCCC--------EEEEEC--CCCCCCCCHHHHHHHHHHHHCC--CCEEEECCCCCCCHHHHHHHHHCCCEE Q ss_conf 9999999855893--------598001--2300004989999999998506--928997497632267898987099469 Q gi|254780558|r 255 NRLRYSLRRGTGY--------FGVMNY--RGAMLLSNKESAEVIFKEFAKR--GLLFFDDGSSPRNLTRVLAPKLNLPYM 322 (396) Q Consensus 255 ~~l~~~l~~~p~~--------vGvnNh--mGs~~t~~~~~m~~vl~~l~~r--gL~flDs~Ts~~Sva~~~A~~~gvp~~ 322 (396) +.+..-+..+... .-|--| +......|+...+.+++.++.. +|.++ .-+.|.-.+.|++.|+++. T Consensus 80 ~~v~yQigaL~~~a~~~g~~l~hVKPHGALYn~~~~d~~~A~av~~ai~~~dp~l~l~---~~~gs~~~~~A~~~Gl~~~ 156 (172) T 1xw8_A 80 AQTLYQIGALATIARAQGGVXRHVKPHGXLYNQAAKEAQLADAIARAVYACDPALILV---GLAGSELIRAGKQYGLTTR 156 (172) T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEECCCHHHHHHHTTCHHHHHHHHHHHHHHCTTCEEE---EETTSHHHHHHHHTTCCEE T ss_pred HHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHCC---CCCCCHHHHHHHHCCCCCH T ss_conf 9999999999999998499023412769999875067999999999999849431103---4787499999988498541 Q ss_pred EEEEEECCC Q ss_conf 845886289 Q gi|254780558|r 323 VADLYLDDQ 331 (396) Q Consensus 323 ~~dvfLD~~ 331 (396) . ..|-|.. T Consensus 157 ~-E~FAD~~ 164 (172) T 1xw8_A 157 E-EVFADAQ 164 (172) T ss_dssp E-EECTTCC T ss_pred H-EEEECCC T ss_conf 0-0011088 No 23 >>1o98_A 2,3-bisphosphoglycerate-independent phosphoglycerate mutase; isomerase, alpha/beta-type structure; HET: 2PG; 1.4A {Bacillus stearothermophilus} (A:75-312) Probab=66.72 E-value=3 Score=20.82 Aligned_cols=61 Identities=21% Similarity=0.246 Sum_probs=41.3 Q ss_pred HHHHHHHCCCEEEEEEEECCC-CCHHHHHHHHHHHHHHHHHCCEE-EEEEECCHHHHHHHHHH Q ss_conf 898987099469845886289-99999999999999999871948-99980887889999999 Q gi|254780558|r 311 RVLAPKLNLPYMVADLYLDDQ-VDRDKIREKLKGLEEIARTTGQA-IGVAVAFDESIEVISQW 371 (396) Q Consensus 311 ~~~A~~~gvp~~~~dvfLD~~-~~~~~I~~qL~~l~~~Ar~~G~A-I~igh~~p~Ti~~L~~w 371 (396) -++|++.|++-...+.|+|.. ..+..-...|.+++..-++.|.+ |+...-|--+.++-++| T Consensus 59 ~~~a~~~gv~~V~iH~f~DGRDt~P~Sa~~yi~~le~~~~~~~~g~IaSv~GRyyaMDRD~rW 121 (238) T 1o98_A 59 LRLAAKEGVKRVYIHGFLDGRDVGPQTAPQYIKELQEKIKEYGVGEIATLSGRYYSMDRDKRW 121 (238) T ss_dssp HHHHHHTTCCCEEEEEEECSSSSCTTCHHHHHHHHHHHHHHHTCCEEEEEEEHHHHTCCSCCH T ss_pred HHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCEEEEEECCCCC T ss_conf 999997199405788841466678325799999999860446750477553348999768974 No 24 >>2qul_A D-tagatose 3-epimerase; beta/alpha barrel, isomerase; 1.79A {Pseudomonas cichorii} PDB: 2ou4_A 2qum_A* 2qun_A* (A:) Probab=62.15 E-value=10 Score=17.51 Aligned_cols=75 Identities=11% Similarity=-0.002 Sum_probs=44.1 Q ss_pred HHHHHHHHCCCEEEEEEEECCC-----------CCHHHHHHHHHHHHHHHHHCCEEEEEEE-CC-----HHHHHHHHHHH Q ss_conf 7898987099469845886289-----------9999999999999999987194899980-88-----78899999997 Q gi|254780558|r 310 TRVLAPKLNLPYMVADLYLDDQ-----------VDRDKIREKLKGLEEIARTTGQAIGVAV-AF-----DESIEVISQWL 372 (396) Q Consensus 310 a~~~A~~~gvp~~~~dvfLD~~-----------~~~~~I~~qL~~l~~~Ar~~G~AI~igh-~~-----p~Ti~~L~~w~ 372 (396) ...+|+.+|.++.......... ...+.+.+.|.++..+|+++|.-+++-. .. -.|.+.+.+++ T Consensus 93 ~i~~a~~lg~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~Gi~~~iE~~~~~~~~~~~~~~~~~~l~ 172 (290) T 2qul_A 93 LLDDCHLLGAPVFAGLTFCAWPQSPPLDMKDKRPYVDRAIESVRRVIKVAEDYGIIYALEVVNRFEQWLCNDAKEAIAFA 172 (290) T ss_dssp HHHHHHHHTCSEEEEEEEEESSCCCCTTCCCCHHHHHHHHHHHHTTHHHHHHHTCEEEEECCCTTTCSSCCSHHHHHHHH T ss_pred HHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCHHHHHHHH T ss_conf 99999995895686314432235788874357999999999999987667762531431135765565558789986655 Q ss_pred HHHHHCCCEEEE Q ss_conf 568876918996 Q gi|254780558|r 373 QQEHVRDVSVVP 384 (396) Q Consensus 373 ~~l~~~gi~lVp 384 (396) .......+.+.. T Consensus 173 ~~~~~~~~~i~~ 184 (290) T 2qul_A 173 DAVDSPACKVQL 184 (290) T ss_dssp HHHCCTTEEEEE T ss_pred HHCCCCCCCCCC T ss_conf 421686422234 No 25 >>3c8f_A Pyruvate formate-lyase 1-activating enzyme; adoMet radical, SAM radical, activase, glycyl radical, 4Fe- 4S, carbohydrate metabolism, cytoplasm; HET: MT2 PGE; 2.25A {Escherichia coli} PDB: 3cb8_A* (A:) Probab=60.19 E-value=11 Score=17.29 Aligned_cols=128 Identities=13% Similarity=0.067 Sum_probs=70.3 Q ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCE--EEECCCCCCCHHHHHHHHHCCCEEE Q ss_conf 78998999999999998558935980012300004989999999998506928--9974976322678989870994698 Q gi|254780558|r 246 VTQTVQQLLNRLRYSLRRGTGYFGVMNYRGAMLLSNKESAEVIFKEFAKRGLL--FFDDGSSPRNLTRVLAPKLNLPYMV 323 (396) Q Consensus 246 ~~~~~~~~~~~l~~~l~~~p~~vGvnNhmGs~~t~~~~~m~~vl~~l~~rgL~--flDs~Ts~~Sva~~~A~~~gvp~~~ 323 (396) ..++.+++...+..........+-+..+.|+-.+-..+.+..+.+.++++|+. ++.+++....--.......|+-.. T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gGep~l~~~~~~~l~~~~~~~~~~~~~~tn~~~~~~~~~~~l~~~~~~~~- 126 (245) T 3c8f_A 48 KEVTVEDLMKEVVTYRHFMNASGGGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNGFVRRYDPVIDELLEVTDLV- 126 (245) T ss_dssp EEECHHHHHHHHGGGHHHHTSTTCEEEEEESCGGGGHHHHHHHHHHHHTTTCCEEEEECCCCCCCCHHHHHHHHTCSEE- T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHCCCCCCC- T ss_conf 1788999999999999985158866871567744267899999999886357146613773114455565421332101- Q ss_pred EEEEECCCCCH--HHHH----HHHHHHHHHHHHCCEEEEEEEC-------CHHHHHHHHHHHHHH Q ss_conf 45886289999--9999----9999999999871948999808-------878899999997568 Q gi|254780558|r 324 ADLYLDDQVDR--DKIR----EKLKGLEEIARTTGQAIGVAVA-------FDESIEVISQWLQQE 375 (396) Q Consensus 324 ~dvfLD~~~~~--~~I~----~qL~~l~~~Ar~~G~AI~igh~-------~p~Ti~~L~~w~~~l 375 (396) .+.+|..... ..+. .+..+....+++.|.-+.+... ..+.+..+.+|+.+. T Consensus 127 -~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 190 (245) T 3c8f_A 127 -MLDLKQMNDEIHQNLVGVSNHRTLEFAKYLANKNVKVWIRYVVVPGWSDDDDSAHRLGEFTRDM 190 (245) T ss_dssp -EEECCCSSHHHHHHHHSSCSHHHHHHHHHHHHHTCCEEEEEEECTTTTCCHHHHHHHHHHHHHH T ss_pred -CCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHC T ss_conf -1450010067888762733266676654542255513776632389889999999999999857 No 26 >>1rk6_A D-aminoacylase; TIM barrel, beta barrel, insertion, hydrolase; 1.43A {Alcaligenes faecalis} (A:102-298,A:361-385,A:486-496) Probab=59.23 E-value=11 Score=17.19 Aligned_cols=124 Identities=16% Similarity=0.205 Sum_probs=63.7 Q ss_pred CCCCCHHHHHHH---HHHHHHHCCCCEEEEECC---CCCCCCCHHHHHHHHHHHHCCCCEEEEC-C----CCCCCH--HH Q ss_conf 678998999999---999998558935980012---3000049899999999985069289974-9----763226--78 Q gi|254780558|r 245 KVTQTVQQLLNR---LRYSLRRGTGYFGVMNYR---GAMLLSNKESAEVIFKEFAKRGLLFFDD-G----SSPRNL--TR 311 (396) Q Consensus 245 ~~~~~~~~~~~~---l~~~l~~~p~~vGvnNhm---Gs~~t~~~~~m~~vl~~l~~rgL~flDs-~----Ts~~Sv--a~ 311 (396) ....+.+|+.+- |+..|+ -|++|+..-+ -+.| ++..-|..++++++++|..|+-- + ....++ +- T Consensus 72 ~r~at~~El~~M~~Ll~eaL~--aGA~GlS~gl~y~Pg~~-a~~~El~~l~~~~a~~g~~~~~H~r~~~~~~~~av~E~i 148 (233) T 1rk6_A 72 RREATADEIQAMQALADDALA--SGAIGISTGAFYPPAAH-ASTEEIIEVCRPLITHGGVYATHMRDEGEHIVQALEETF 148 (233) T ss_dssp SSCCCHHHHHHHHHHHHHHHH--HTCCEEEEETTSGGGTT-CCHHHHHHHHTHHHHHTCEEEEECSCSSTTHHHHHHHHH T ss_pred CCCCCCHHHHHHHHHHHHHHH--HHHCCCCCCCCCCCCCC-CCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHH T ss_conf 333210000114678998876--54204333444333222-214777776542102576221000234433014579999 Q ss_pred HHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCE-EEEEEECCHH-HHHHHHHHHH Q ss_conf 989870994698458862899999999999999999987194-8999808878-8999999975 Q gi|254780558|r 312 VLAPKLNLPYMVADLYLDDQVDRDKIREKLKGLEEIARTTGQ-AIGVAVAFDE-SIEVISQWLQ 373 (396) Q Consensus 312 ~~A~~~gvp~~~~dvfLD~~~~~~~I~~qL~~l~~~Ar~~G~-AI~igh~~p~-Ti~~L~~w~~ 373 (396) .+|++.|.|.-..++-.....+...+.+.|...+ ++++|. .-.=..||.+ .+.+|..+.+ T Consensus 149 ~iAr~sG~~lhisHl~s~g~~~~~~~~~~L~~ie--aa~~G~dVt~d~yPy~~~~~~~~~~~~~ 210 (233) T 1rk6_A 149 RIGRELDVPVVISHHKVMGKLNFGRSKETLALIE--AAMASQDVSLDAYPYDEPDVQRILAFGP 210 (233) T ss_dssp HHHHHHTSCEEECSCCCCSGGGTTTHHHHHHHHH--HHHHHSCEEEEECSCCHHHHHHHHHSTT T ss_pred HHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHH--HHHHCCCCCCCEEEECCCCEEHHHCCCC T ss_conf 9998718743774211223200233445555444--4431122123010021110000002564 No 27 >>3cqj_A L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barrel, isomerase, phosphate-binding motif, structural genomics; 2.04A {Escherichia coli} PDB: 3cqi_A 3cqh_A 3cqk_A (A:) Probab=57.63 E-value=12 Score=17.02 Aligned_cols=153 Identities=12% Similarity=0.044 Sum_probs=70.8 Q ss_pred CCHHHHHHHHHHCCCCEE-EECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEE----CCCCCCCCC Q ss_conf 768999999998599299-981766568987787855446789989999999999985589359800----123000049 Q gi|254780558|r 207 NSLDRWMKEAKKKGQEAI-LQIPMQAFDESYNEDDSYTLKVTQTVQQLLNRLRYSLRRGTGYFGVMN----YRGAMLLSN 281 (396) Q Consensus 207 ~~~~~~~~~Ar~~G~Evl-lhlPMEp~~~~~~~pGp~~L~~~~~~~~~~~~l~~~l~~~p~~vGvnN----hmGs~~t~~ 281 (396) -...+..+.+++.|++-+ +..... . +..-....+ ++..+.+...+....-.+...+ ..+.....+ T Consensus 30 ~~l~~~~~~~~~~G~~~iEl~~~~~-----~----~~~~~~~~~-~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~ 99 (295) T 3cqj_A 30 ECWLERLQLAKTLGFDFVEMSVDET-----D----ERLSRLDWS-REQRLALVNAIVETGVRVPSMCLSAHRRFPLGSED 99 (295) T ss_dssp SCHHHHHHHHHHTTCSEEEEECCSS-----H----HHHGGGGCC-HHHHHHHHHHHHHHCCEEEEEEEGGGGTSCTTCSS T ss_pred CCHHHHHHHHHHCCCCEEEEEECCC-----C----HHHCCCCCC-HHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCC T ss_conf 8999999999985999899960576-----2----221346899-99999999999983995578752433479999979 Q ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCEEEEEEEECCC-----CCHHHHHHHHHHHHHHHHHCCEEEE Q ss_conf 89999999998506928997497632267898987099469845886289-----9999999999999999987194899 Q gi|254780558|r 282 KESAEVIFKEFAKRGLLFFDDGSSPRNLTRVLAPKLNLPYMVADLYLDDQ-----VDRDKIREKLKGLEEIARTTGQAIG 356 (396) Q Consensus 282 ~~~m~~vl~~l~~rgL~flDs~Ts~~Sva~~~A~~~gvp~~~~dvfLD~~-----~~~~~I~~qL~~l~~~Ar~~G~AI~ 356 (396) +...+..++.+++ ...+|+.+|.++.....-.... ...+.+.+.|+++..+|+++|.-+. T Consensus 100 ~~~~~~~~~~~~~---------------~i~~a~~lg~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~ 164 (295) T 3cqj_A 100 DAVRAQGLEIMRK---------------AIQFAQDVGIRVIQLAGYDVYYQEANNETRRRFRDGLKESVEMASRAQVTLA 164 (295) T ss_dssp HHHHHHHHHHHHH---------------HHHHHHHHTCCEEEECCCSCSSSCCCHHHHHHHHHHHHHHHHHHHHHTCEEE T ss_pred HHHHHHHHHHHHH---------------HHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEE T ss_conf 9999999999999---------------9999986499989994798876689599999999999999999996098999 Q ss_pred EEEC---CHHHHHHHHHHHHHHHHCCCEEEE Q ss_conf 9808---878899999997568876918996 Q gi|254780558|r 357 VAVA---FDESIEVISQWLQQEHVRDVSVVP 384 (396) Q Consensus 357 igh~---~p~Ti~~L~~w~~~l~~~gi~lVp 384 (396) +-.. ...|.+.+.+.+..+...++.++. T Consensus 165 ~e~~~~~~~~~~~~~~~l~~~v~~~~~g~~~ 195 (295) T 3cqj_A 165 MEIMDYPLMNSISKALGYAHYLNNPWFQLYP 195 (295) T ss_dssp EECCSSGGGCSHHHHHHHHHHHCCTTEEEEC T ss_pred EECCCCCCCCCHHHHHHHHHHCCCCCEEEEE T ss_conf 7134676659989998888734997448983 No 28 >>3kws_A Putative sugar isomerase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 1.68A {Parabacteroides distasonis atcc 8503} (A:) Probab=57.01 E-value=12 Score=16.95 Aligned_cols=88 Identities=10% Similarity=0.087 Sum_probs=52.5 Q ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH---HHHHCCCCEEEEECCC--CCCCCCHH Q ss_conf 899999999859929998176656898778785544678998999999999---9985589359800123--00004989 Q gi|254780558|r 209 LDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLKVTQTVQQLLNRLRY---SLRRGTGYFGVMNYRG--AMLLSNKE 283 (396) Q Consensus 209 ~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~~~~~~~~~~~l~~---~l~~~p~~vGvnNhmG--s~~t~~~~ 283 (396) ..++++.|+..|-..+.-.|-...... ........-+++.+.|+. .....--.+.+.||.+ +.+..+.. T Consensus 106 ~~~~~~~a~~lga~~i~~~~~~~~~~~------~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~~e~~~~~~~~~~~~~~ 179 (287) T 3kws_A 106 XKEIIAAAGELGSTGVIIVPAFNGQVP------ALPHTXETRDFLCEQFNEXGTFAAQHGTSVIFEPLNRKECFYLRQVA 179 (287) T ss_dssp HHHHHHHHHHTTCSEEEECSCCTTCCS------BCCSSHHHHHHHHHHHHHHHHHHHHTTCCEEECCCCTTTCSSCCCHH T ss_pred HHHHHHHHHHHCCCEEEECCCCCCCCC------CCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCEEECCHH T ss_conf 999999999809984775145557788------88788999999999999999999970987999966776880115789 Q ss_pred HHHHHHHHHHCCCCEEEEC Q ss_conf 9999999985069289974 Q gi|254780558|r 284 SAEVIFKEFAKRGLLFFDD 302 (396) Q Consensus 284 ~m~~vl~~l~~rgL~flDs 302 (396) .+..+++.+...++.+.=+ T Consensus 180 ~~~~~~~~~~~~~~gl~~D 198 (287) T 3kws_A 180 DAASLCRDINNPGVRCXGD 198 (287) T ss_dssp HHHHHHHHHCCTTEEEEEE T ss_pred HHHHHHHHHHCCCCCCEEC T ss_conf 8888899874036760111 No 29 >>3fcp_A L-Ala-D/L-Glu epimerase, A muconate lactonizing enzyme; structural genomics, nysgrc,target 9450E, PSI-2; 1.80A {Klebsiella pneumoniae subsp} (A:129-357) Probab=56.33 E-value=13 Score=16.88 Aligned_cols=147 Identities=14% Similarity=0.145 Sum_probs=93.6 Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHCCCCEEEEE Q ss_conf 79350898708987689999999985992999817665689877878554467-89989999999999985589359800 Q gi|254780558|r 194 LPANITLAFASNGNSLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLKV-TQTVQQLLNRLRYSLRRGTGYFGVMN 272 (396) Q Consensus 194 LP~~vT~A~~P~~~~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~-~~~~~~~~~~l~~~l~~~p~~vGvnN 272 (396) +|.-.|..+........+.++.+++.|+-.+ -+.. ..+.++...+++.....+...+-+.= T Consensus 9 i~~y~~~~~~~~~e~~~~~~~~~~~~G~~~~------------------Kikvg~~~~~~d~~~i~~vr~~~g~~~~l~v 70 (229) T 3fcp_A 9 LPVLWTLASGDTAKDIAEGEKLLAEGRHRAF------------------KLKIGARELATDLRHTRAIVEALGDRASIRV 70 (229) T ss_dssp EEBCEEECSSCHHHHHHHHHHHTC----CEE------------------EEECCSSCHHHHHHHHHHHHHHTCTTCEEEE T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHCCC------------------CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC T ss_conf 1245420135541036899999997430121------------------2234576521367765433321386644310 Q ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCHHH--HHHHHHCCCEEEEEEEECCC-CCHHHHHH---------- Q ss_conf 123000049899999999985069289974976322678--98987099469845886289-99999999---------- Q gi|254780558|r 273 YRGAMLLSNKESAEVIFKEFAKRGLLFFDDGSSPRNLTR--VLAPKLNLPYMVADLYLDDQ-VDRDKIRE---------- 339 (396) Q Consensus 273 hmGs~~t~~~~~m~~vl~~l~~rgL~flDs~Ts~~Sva~--~~A~~~gvp~~~~dvfLD~~-~~~~~I~~---------- 339 (396) --..++ +......+++.|.+.+++|+..-...+.... .+.+..++|.+. |.. .+....++ T Consensus 71 Dan~~~--~~~~a~~~~~~l~~~~~~~~EeP~~~~d~~~~~~l~~~~~~pia~-----~E~~~~~~~~~~~~~~~~~d~~ 143 (229) T 3fcp_A 71 DVNQAW--DAATGAKGCRELAAMGVDLIEQPVSAHDNAALVRLSQQIETAILA-----DEAVATAYDGYQLAQQGFTGAY 143 (229) T ss_dssp ECTTCB--CHHHHHHHHHHHHHTTCSEEECCBCTTCHHHHHHHHHHSSSEEEE-----STTCCSHHHHHHHHHTTCCSEE T ss_pred CCCCCC--CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCEEEC-----CCCCCCCHHHHHHHHCCCCCCC T ss_conf 224232--321110146666541233102300113321133432211321210-----3233320357788870884011 Q ss_pred -----------HHHHHHHHHHHCCEEEEEEECCHHHH Q ss_conf -----------99999999987194899980887889 Q gi|254780558|r 340 -----------KLKGLEEIARTTGQAIGVAVAFDESI 365 (396) Q Consensus 340 -----------qL~~l~~~Ar~~G~AI~igh~~p~Ti 365 (396) ...++..+|+.+|.-+.+++.....| T Consensus 144 ~~d~~~~GGit~~~~~~~~a~~~gi~~~~~~~~~~~i 180 (229) T 3fcp_A 144 ALKIAKAGGPNSVLALARVAQAAGIGLYGGTMLEGTV 180 (229) T ss_dssp EECHHHHTSTTHHHHHHHHHHHHTCEEEECCSCCCHH T ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCCEEECCCCCCHH T ss_conf 4320236662367687899997598389558877799 No 30 >>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA; 2.00A {Aquifex aeolicus VF5} (A:) Probab=55.87 E-value=13 Score=16.83 Aligned_cols=133 Identities=11% Similarity=-0.028 Sum_probs=78.1 Q ss_pred HHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEE Q ss_conf 98379350898708987689999999985992999817665689877878554467899899999999999855893598 Q gi|254780558|r 191 INLLPANITLAFASNGNSLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLKVTQTVQQLLNRLRYSLRRGTGYFGV 270 (396) Q Consensus 191 i~~LP~~vT~A~~P~~~~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~~~~~~~~~~~l~~~l~~~p~~vGv 270 (396) ...+-.....-......+..++.+..++.|..+.+.. .+....+.+..+......++.+ T Consensus 118 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~i~~ 176 (262) T 2ekc_A 118 SREKGIDGFIVPDLPPEEAEELKAVMKKYVLSFVPLG---------------------APTSTRKRIKLICEAADEMTYF 176 (262) T ss_dssp HHHTTCCEEECTTCCHHHHHHHHHHHHHTTCEECCEE---------------------CTTCCHHHHHHHHHHCSSCEEE T ss_pred HHHCCCCEEEECCCHHHHHHHHHHHHHHCCCCEEECC---------------------CCCCCCHHHHHHHHCCCCEEEE T ss_conf 8856960775034226554556555320330012113---------------------3322102345556426633788 Q ss_pred EECCCC---CCCCCHHHHHHHHHHHHCC--CCEEEECCCCCCCHHHHHHHHHC-CCEEEEEEEECCCCCHHHHHHHHHHH Q ss_conf 001230---0004989999999998506--92899749763226789898709-94698458862899999999999999 Q gi|254780558|r 271 MNYRGA---MLLSNKESAEVIFKEFAKR--GLLFFDDGSSPRNLTRVLAPKLN-LPYMVADLYLDDQVDRDKIREKLKGL 344 (396) Q Consensus 271 nNhmGs---~~t~~~~~m~~vl~~l~~r--gL~flDs~Ts~~Sva~~~A~~~g-vp~~~~dvfLD~~~~~~~I~~qL~~l 344 (396) .+|.|. ++..+......+.+.+++. -..|+|.+=+....+..++.... +-..++.++..........++.++++ T Consensus 177 ~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~pi~~~GGI~~~~~~~~~~aGAD~VvvGs~~~~~~e~~~~~~~k~~i~~l 256 (262) T 2ekc_A 177 VSVTGTTGAREKLPYERIKKKVEEYRELCDKPVVVGFGVSKKEHAREIGSFADGVVVGSALVKLAGQKKIEDLGNLVKEL 256 (262) T ss_dssp ESSCC---------CHHHHHHHHHHHHHCCSCEEEESSCCSHHHHHHHHTTSSEEEECHHHHHHHHTTCHHHHHHHHHHH T ss_pred EECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHCCCEEEECHHHHHHHHHCCHHHHHHHHHHH T ss_conf 62246654212343246789999986305787588616599999999982099999878999998755689999999999 No 31 >>3cny_A Inositol catabolism protein IOLE; NP_786806.1, xylose isomerase-like TIM barrel, structural genomics; 1.85A {Lactobacillus plantarum WCFS1} (A:) Probab=55.00 E-value=13 Score=16.75 Aligned_cols=117 Identities=9% Similarity=0.012 Sum_probs=60.1 Q ss_pred CCHHHHHHHHHCCCCCEEEEECCC----------CCHHHHHHHHHHCCCCEEEEC-CCCCCCCCCCCCCCCCCCCCCCHH Q ss_conf 716889999837935089870898----------768999999998599299981-766568987787855446789989 Q gi|254780558|r 183 SQTGTQRAINLLPANITLAFASNG----------NSLDRWMKEAKKKGQEAILQI-PMQAFDESYNEDDSYTLKVTQTVQ 251 (396) Q Consensus 183 ~~~~~~~ai~~LP~~vT~A~~P~~----------~~~~~~~~~Ar~~G~Evllhl-PMEp~~~~~~~pGp~~L~~~~~~~ 251 (396) ......+++.+....++.--.++. ....+.++.|++.|-..+... ..-+..... ..+.........+ T Consensus 56 ~~~~~~~~l~~~gl~i~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lg~~~v~~~~g~~~~~~~~--~~~~~~~~~~~~~ 133 (301) T 3cny_A 56 GPEKLNYELKLRNLEIAGQWFSSYIIRDGIEKASEAFEKHCQYLKAINAPVAVVSEQTYTIQRSD--TANIFKDKPYFTD 133 (301) T ss_dssp CHHHHHHHHHHTTCEECEEEEEECHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECTTCCTTCS--SCCTTTCCCCCCH T ss_pred CHHHHHHHHHHHCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCC--CCCCCCCCCCCCH T ss_conf 98999999998099001402466543200245778888899999984036355540244420255--6776677888889 Q ss_pred HHHHHHHHHH-------HHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEEC Q ss_conf 9999999999-------85589359800123000049899999999985069289974 Q gi|254780558|r 252 QLLNRLRYSL-------RRGTGYFGVMNYRGAMLLSNKESAEVIFKEFAKRGLLFFDD 302 (396) Q Consensus 252 ~~~~~l~~~l-------~~~p~~vGvnNhmGs~~t~~~~~m~~vl~~l~~rgL~flDs 302 (396) +..+++...+ ...--.+.+-||.+... .+......+++.+...++++.=+ T Consensus 134 ~~~~~~~~~~~~~~~~a~~~gv~l~~E~~~~~~~-~~~~~~~~~~~~~~~~~~gl~~D 190 (301) T 3cny_A 134 KEWDEVCKGLNHYGEIAAKYGLKVAYHHHXGTGI-QTKEETDRLXANTDPKLVGLLYD 190 (301) T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEEECCTTSSS-CSHHHHHHHHHTSCTTTCEEEEE T ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEECCCCEEC-CCCCHHHHHHHHCCCCEEEEEEE T ss_conf 9999999999999999986597158852555000-23421567765147525878885 No 32 >>2e67_A Hypothetical protein TTHB029; NPPSFA, national project on protein structural and functional analyses, structural genomics; 2.90A {Thermus thermophilus HB8} (A:) Probab=54.09 E-value=14 Score=16.65 Aligned_cols=177 Identities=13% Similarity=-0.030 Sum_probs=106.8 Q ss_pred CEEEEEECCCCCCCHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCC---C-------- Q ss_conf 65899973778771688999983793508987089876899999999859929998176656898778---7-------- Q gi|254780558|r 171 ARIAIVVSGLGISQTGTQRAINLLPANITLAFASNGNSLDRWMKEAKKKGQEAILQIPMQAFDESYNE---D-------- 239 (396) Q Consensus 171 ~riAIVIddlG~~~~~~~~ai~~LP~~vT~A~~P~~~~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~---p-------- 239 (396) .+|-|-.||+|++.. ..+||.+.= -=+.+++..++..+ ++.+-.|=||+=+-.. .|-.. + T Consensus 13 k~Lii~ADDfGls~g-vn~ai~~Gi-ltsts~Mv~~p~~~------~a~~l~vGlHl~LT~g-~p~~~~~p~~~~psLvd 83 (264) T 2e67_A 13 RVLILHHDDLGLTHA-QNGAYQALG-LPTGSVMVPGAWAS------GVKGEDLGVHLVLTSE-WPAPRMRPLTEGESLRD 83 (264) T ss_dssp EEEEEEEEEETSCHH-HHHHHHHHC-CCEEEECTTSTTGG------GCCCTEEEEEECCCCC-SSSSCCCCSSCCGGGCB T ss_pred CEEEEECCCCCCCHH-HHHHHHHCC-CCEEEEEECCHHHH------HCCCCCCCEEEEECCC-CCCCCCCCCCCCCCCCC T ss_conf 269986255778888-999999397-10335433687898------5656676157885578-88788887112777668 Q ss_pred -------CCCCCCCCCCHHHHHHHHHHHHHHCCCCE---EEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCC-- Q ss_conf -------85544678998999999999998558935---980012300004989999999998506928997497632-- Q gi|254780558|r 240 -------DSYTLKVTQTVQQLLNRLRYSLRRGTGYF---GVMNYRGAMLLSNKESAEVIFKEFAKRGLLFFDDGSSPR-- 307 (396) Q Consensus 240 -------Gp~~L~~~~~~~~~~~~l~~~l~~~p~~v---GvnNhmGs~~t~~~~~m~~vl~~l~~rgL~flDs~Ts~~-- 307 (396) .-..+.-..+.++++.-+++-+.++-..+ -|..||+.- ..+...+.+++.++++|+-+.--..... T Consensus 84 ~~G~f~~~~~~~~~~~~~~ev~~E~~AQi~~f~~g~~P~hiD~H~h~h--~~p~i~~~~~~la~~~gip~~~~~~~~~~~ 161 (264) T 2e67_A 84 EAGYFPESLEALWRKARAEEVERELKAQIQAAAKLFSPTHLDAHQGAV--LRPDLAEVYLRLAEAYRLVPLVPESLEGLG 161 (264) T ss_dssp TTTBCCSSHHHHHHHCCHHHHHHHHHHHHHHHHTTSCCCEEEEGGGGG--GSHHHHHHHHHHHHHTTCEECCBSCCTTSC T ss_pred CCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEEECCHHHH--CCHHHHHHHHHHHHHCCCCEECCCCHHHCC T ss_conf 888645659999842699999999999999999857997251531033--176899999998887189720163023205 Q ss_pred -----CHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCEEEEEEECC Q ss_conf -----267898987099469845886289999999999999999998719489998088 Q gi|254780558|r 308 -----NLTRVLAPKLNLPYMVADLYLDDQVDRDKIREKLKGLEEIARTTGQAIGVAVAF 361 (396) Q Consensus 308 -----Sva~~~A~~~gvp~~~~dvfLD~~~~~~~I~~qL~~l~~~Ar~~G~AI~igh~~ 361 (396) ..........+... .+.|.+...+...-..++.+.. .....|....++||- T Consensus 162 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~eim~HPg 217 (264) T 2e67_A 162 VPPPFLPELERLLYETPFP--QVRFLDPYGLPPEERLGFYLDL-AHLPPGLYYLVHHSA 217 (264) T ss_dssp CCGGGHHHHHHHHHHCCSC--CBEEECCTTSCGGGHHHHHHHG-GGCCSEEEEEEECCC T ss_pred CCHHHHHHHHHHHHHCCCC--CCCCCCCCCCCCHHHHHHHHHH-HCCCCCCEEEEECCC T ss_conf 7704789999764213444--3211443356603599998888-627999759997999 No 33 >>1l6r_A Hypothetical protein TA0175; structural genomics, putative hydrolase, midwest center for structural genomics, MCSG, PSI; 1.40A {Thermoplasma acidophilum} (A:86-152) Probab=53.65 E-value=10 Score=17.52 Aligned_cols=32 Identities=25% Similarity=0.296 Sum_probs=28.7 Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCEEEECCCCC Q ss_conf 30000498999999999850692899749763 Q gi|254780558|r 275 GAMLLSNKESAEVIFKEFAKRGLLFFDDGSSP 306 (396) Q Consensus 275 Gs~~t~~~~~m~~vl~~l~~rgL~flDs~Ts~ 306 (396) -..|+.|..-|..|-++..+|||..++|+-+- T Consensus 29 S~~F~~d~~~~d~v~~EAe~r~l~i~~Sg~tw 60 (67) T 1l6r_A 29 STGFDIDPEDVDYVRKEAESRGFVIFYSGYSW 60 (67) T ss_dssp SEEEBCCGGGHHHHHHHHHTTTEEEEEETTEE T ss_pred HHHHCCCHHHHHHHHHHHHCCCEEEEECCCEE T ss_conf 12103689999999998510654999889279 No 34 >>1pzx_A Hypothetical protein APC36103; structural genomics, two domains containing mixed alpha/beta structures, PSI; HET: PLM; 2.00A {Geobacillus stearothermophilus} (A:1-29,A:66-158) Probab=51.41 E-value=15 Score=16.38 Aligned_cols=87 Identities=7% Similarity=-0.012 Sum_probs=57.7 Q ss_pred CHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHH----CCCCEEEECCCCCCCHHHHHHHHHCCCEEEE Q ss_conf 989999999999985589359800123000049899999999985----0692899749763226789898709946984 Q gi|254780558|r 249 TVQQLLNRLRYSLRRGTGYFGVMNYRGAMLLSNKESAEVIFKEFA----KRGLLFFDDGSSPRNLTRVLAPKLNLPYMVA 324 (396) Q Consensus 249 ~~~~~~~~l~~~l~~~p~~vGvnNhmGs~~t~~~~~m~~vl~~l~----~rgL~flDs~Ts~~Sva~~~A~~~gvp~~~~ 324 (396) ++.+..+.++.....--..+.+ |+.|++.+.-..|+.+.+.++ ...+..+||++..-..+..+-.. T Consensus 30 sp~e~~e~f~~l~~~g~~II~i--~iSs~LSGTy~~a~~aa~~~~ee~p~~~I~VIDSk~~s~g~gllV~eA-------- 99 (122) T 1pzx_A 30 SPLAMKELFLPYAKENRPCLYI--AFSSKLSGTYQTAMAVRSELLDEYPEFRLTIIDSKCASLGQGLAVMKA-------- 99 (122) T ss_dssp CHHHHHHHHHHHHHTTCCEEEE--ECCTTTCSHHHHHHHHHHHHHHHSTTCCEEEEECCCCHHHHHHHHHHH-------- T ss_pred CHHHHHHHHHHHHHCCCCEEEE--ECCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHH-------- T ss_conf 9999999999998689939999--888616279999999999877447997399995897118899999999-------- Q ss_pred EEEECCCCCHHHHHHHHHHHH Q ss_conf 588628999999999999999 Q gi|254780558|r 325 DLYLDDQVDRDKIREKLKGLE 345 (396) Q Consensus 325 dvfLD~~~~~~~I~~qL~~l~ 345 (396) -..+++-.+.+.|.++++++. T Consensus 100 ~kl~e~G~s~eeI~~~le~~~ 120 (122) T 1pzx_A 100 VELAKQNTPYNLLCETIESYC 120 (122) T ss_dssp HHHHHTTCCHHHHHHHHHHHH T ss_pred HHHHHCCCCHHHHHHHHHHHH T ss_conf 999986999999999999997 No 35 >>3egl_A DEGV family protein; alpha-beta-alpha sandwich, methylated lysines, structural genomics, PSI-2; HET: MLY MSE PLM; 2.41A {Corynebacterium glutamicum atcc 13032} (A:1-136) Probab=49.89 E-value=16 Score=16.23 Aligned_cols=90 Identities=12% Similarity=-0.029 Sum_probs=63.9 Q ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCEEEEEEE Q ss_conf 99899999999999855893598001230000498999999999850692899749763226789898709946984588 Q gi|254780558|r 248 QTVQQLLNRLRYSLRRGTGYFGVMNYRGAMLLSNKESAEVIFKEFAKRGLLFFDDGSSPRNLTRVLAPKLNLPYMVADLY 327 (396) Q Consensus 248 ~~~~~~~~~l~~~l~~~p~~vGvnNhmGs~~t~~~~~m~~vl~~l~~rgL~flDs~Ts~~Sva~~~A~~~gvp~~~~dvf 327 (396) -+.++..+.++..+..-.+--=+.-|+.|.+.+.-..+...-++.+.+....+||++..-..+.-+-... .- T Consensus 45 ps~~~~~~~~~~l~~~g~yd~Ii~i~iSs~lSgt~~~a~~a~~~~~~~~i~ViDs~~~s~g~~~~v~~a~--------~~ 116 (136) T 3egl_A 45 LSSLELAASYARQLERGGDDGVLALHISXELSSTWSAAVTAAAVFDDDSVRVVDTSSLGXAVGAAAXAAA--------RX 116 (136) T ss_dssp CCHHHHHHHHHHHHHHTTTSCEEEECSCTTTCSHHHHHHHHHTTSSTTSEEEECCSCCTHHHHHHHHHHH--------HH T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHH--------HH T ss_conf 9979999999999984799729999757662468999999997579980999917850399999999999--------99 Q ss_pred ECCCCCHHHHHHHHHHHH Q ss_conf 628999999999999999 Q gi|254780558|r 328 LDDQVDRDKIREKLKGLE 345 (396) Q Consensus 328 LD~~~~~~~I~~qL~~l~ 345 (396) +++-.+.+.|...++++. T Consensus 117 ~~~g~s~~ei~~~l~~~~ 134 (136) T 3egl_A 117 AXDGASLQECYDIAVDTL 134 (136) T ss_dssp HHTTCCHHHHHHHHHHHH T ss_pred HHCCCCHHHHHHHHHHHH T ss_conf 886999899999999988 No 36 >>2pp0_A L-talarate/galactarate dehydratase; enolase superfamily, lyase; 2.20A {Salmonella typhimurium} PDB: 2pp1_A* 2pp3_A* (A:154-375) Probab=48.80 E-value=17 Score=16.13 Aligned_cols=132 Identities=11% Similarity=0.156 Sum_probs=86.3 Q ss_pred HHHHHHHHHHCCCC-EEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHH Q ss_conf 89999999985992-99981766568987787855446789989999999999985589359800123000049899999 Q gi|254780558|r 209 LDRWMKEAKKKGQE-AILQIPMQAFDESYNEDDSYTLKVTQTVQQLLNRLRYSLRRGTGYFGVMNYRGAMLLSNKESAEV 287 (396) Q Consensus 209 ~~~~~~~Ar~~G~E-vllhlPMEp~~~~~~~pGp~~L~~~~~~~~~~~~l~~~l~~~p~~vGvnNhmGs~~t~~~~~m~~ 287 (396) ..+.++.+++.|+- +=+++ | ....++...+++.....++..+-+.--...+++.+ .... T Consensus 26 ~~~~~~~~~~~G~~~~Kikv------------g------~~~~~~d~~~i~a~r~~~g~~~~l~~Dan~~~~~~--~a~~ 85 (222) T 2pp0_A 26 VLKNVVISRENGIGGIKLKV------------G------QPNCAEDIRRLTAVREALGDEFPLMVDANQQWDRE--TAIR 85 (222) T ss_dssp HHHHHHHHHHTTCSCEEEEC------------C------CSCHHHHHHHHHHHHHHHCSSSCEEEECTTCSCHH--HHHH T ss_pred HHHHHHHHHCCCCCCCCCCC------------C------CCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCHH--HHHH T ss_conf 99974344306876532224------------6------75448899999999976099865986256679999--9999 Q ss_pred HHHHHHCCCCEEEECCCCCCCHHH--HHHHHHCCCEEEEEEEECCC-CCHHHHHH---------------------HHHH Q ss_conf 999985069289974976322678--98987099469845886289-99999999---------------------9999 Q gi|254780558|r 288 IFKEFAKRGLLFFDDGSSPRNLTR--VLAPKLNLPYMVADLYLDDQ-VDRDKIRE---------------------KLKG 343 (396) Q Consensus 288 vl~~l~~rgL~flDs~Ts~~Sva~--~~A~~~gvp~~~~dvfLD~~-~~~~~I~~---------------------qL~~ 343 (396) +++.|.+.+++|+..-........ ++++..++|.+. |.. .+...... ...+ T Consensus 86 ~~~~l~~~~~~~iEeP~~~~d~~~~~~l~~~~~ipia~-----~E~~~~~~~~~~~i~~~~~d~i~~d~~~~GGit~~~~ 160 (222) T 2pp0_A 86 MGRKMEQFNLIWIEEPLDAYDIEGHAQLAAALDTPIAT-----GEMLTSFREHEQLILGNASDFVQPDAPRVGGISPFLK 160 (222) T ss_dssp HHHHHGGGTCSCEECCSCTTCHHHHHHHHHHCSSCEEE-----CTTCCSHHHHHHHHHTTCCSEECCCHHHHTSHHHHHH T ss_pred HHHHHCCCCCEEEECCCCCCCCCHHCCCCCCCCCCCCC-----CCCCHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHH T ss_conf 99864134862663365312430000222257988532-----2210012567888873068499855543525899999 Q ss_pred HHHHHHHCCEEEEEEECCHHHH Q ss_conf 9999987194899980887889 Q gi|254780558|r 344 LEEIARTTGQAIGVAVAFDESI 365 (396) Q Consensus 344 l~~~Ar~~G~AI~igh~~p~Ti 365 (396) +..+|+++|.-+.++......+ T Consensus 161 ~~~~a~~~gi~~~~h~~~~~~i 182 (222) T 2pp0_A 161 IMDLAAKHGRKLAPHFAMEVHL 182 (222) T ss_dssp HHHHHHHTTCEECCCSCHHHHH T ss_pred HHHHHHHCCCEEEECHHHHHHH T ss_conf 9999998599797442999999 No 37 >>3eez_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, unknown function, PSI-2, protein structure initiative; 2.80A {Silicibacter pomeroyi} (A:127-356) Probab=48.59 E-value=17 Score=16.11 Aligned_cols=140 Identities=13% Similarity=0.080 Sum_probs=97.4 Q ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHH Q ss_conf 89999999985992999817665689877878554467899899999999999855893598001230000498999999 Q gi|254780558|r 209 LDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLKVTQTVQQLLNRLRYSLRRGTGYFGVMNYRGAMLLSNKESAEVI 288 (396) Q Consensus 209 ~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~~~~~~~~~~~l~~~l~~~p~~vGvnNhmGs~~t~~~~~m~~v 288 (396) ..+.++.++++|+-.+ -+.++-+.++...+++.....++.-+.+.--....+|.++. ..+ T Consensus 23 ~~~~~~~~~~~G~~~~------------------KiKvg~~~~~d~~~v~~ir~~~g~~~~l~lDan~~~~~~~A--~~~ 82 (230) T 3eez_A 23 TRAVIDRYRQRGYVAH------------------SVKIGGDVERDIARIRDVEDIREPGEIVLYDVNRGWTRQQA--LRV 82 (230) T ss_dssp HHHHHHHHHHTTCCEE------------------EEECCSCHHHHHHHHHHHTTSCCTTCEEEEECTTCCCHHHH--HHH T ss_pred HHHHHHHHHHHHHHHH------------------CCCCCCCHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCHHH--HHH T ss_conf 6678999987642332------------------02322101579999997776430032100011224450345--543 Q ss_pred HHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCEEEEEEEECCCCCHHHHH---------------------HHHHHHHHH Q ss_conf 99985069289974976322678989870994698458862899999999---------------------999999999 Q gi|254780558|r 289 FKEFAKRGLLFFDDGSSPRNLTRVLAPKLNLPYMVADLYLDDQVDRDKIR---------------------EKLKGLEEI 347 (396) Q Consensus 289 l~~l~~rgL~flDs~Ts~~Sva~~~A~~~gvp~~~~dvfLD~~~~~~~I~---------------------~qL~~l~~~ 347 (396) ++.|.+.++.|+..-...... ..+.+..++|.+.-..+ .+...++ .+..++..+ T Consensus 83 ~~~l~~~~~~~~E~P~~~~~~-~~~~~~~~ipIa~dE~~----~~~~~~~~~~~~~~~d~~~~~~~~~GGit~~~~i~~~ 157 (230) T 3eez_A 83 MRATEDLHVMFEQPGETLDDI-AAIRPLHSAPVSVDECL----VTLQDAARVARDGLAEVFGIKLNRVGGLTRAARMRDI 157 (230) T ss_dssp HHHTGGGTCCEECCSSSHHHH-HHTGGGCCCCEEECTTC----CSHHHHHHHHHTTCCSEEEEEHHHHTSHHHHHHHHHH T ss_pred HCCCCCEEEEEEHHHHHHHHH-HHHCCCCCCCCCCCCCC----CCCHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHHHH T ss_conf 024443058742121024666-54112311222345433----3204555554337522245543225464266788888 Q ss_pred HHHCCEEEEEEECC--HHHHHHHHHHHH Q ss_conf 98719489998088--788999999975 Q gi|254780558|r 348 ARTTGQAIGVAVAF--DESIEVISQWLQ 373 (396) Q Consensus 348 Ar~~G~AI~igh~~--p~Ti~~L~~w~~ 373 (396) |+++|.-+.+++.. ..++.+...+.. T Consensus 158 A~~~gi~~~~~~~~~~~i~~~~~~~laa 185 (230) T 3eez_A 158 ALTHGIDMFVMATGGSVLADAEALHLAA 185 (230) T ss_dssp HHHTTCEEEEECSSCSHHHHHHHHHHHH T ss_pred HHCCCCEEEEECCCCCHHHHHHHHHHHH T ss_conf 7515974876178885999999999998 No 38 >>2zvr_A Uncharacterized protein TM_0416; hyperthermophIle, ketohexose 3- epimerase, D-tagatose 3-epimerase, isomerase; 2.20A {Thermotoga maritima} (A:) Probab=47.53 E-value=18 Score=16.00 Aligned_cols=81 Identities=10% Similarity=0.108 Sum_probs=53.4 Q ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCH----HHHHHHHHHHHHHCCCC---EEEEECCCCCCCCC Q ss_conf 899999999859929998176656898778785544678998----99999999999855893---59800123000049 Q gi|254780558|r 209 LDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLKVTQTV----QQLLNRLRYSLRRGTGY---FGVMNYRGAMLLSN 281 (396) Q Consensus 209 ~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~~~~~----~~~~~~l~~~l~~~p~~---vGvnNhmGs~~t~~ 281 (396) ..++++.|..-|-.++.+.+. ........ +.+.+.|+++.+....+ +++-||-...+..+ T Consensus 115 ~~~~i~~a~~lg~~~i~~~~g-------------~~~~~~~~~~~~~~~~~~l~~~~~~a~~~gi~l~~E~~~~~~~~~~ 181 (290) T 2zvr_A 115 VVKHTEVAGMFGALVIIGLVR-------------GRREGRSYEETEELFIESMKRLLELTEHAKFVIEPLNRYETDFINT 181 (290) T ss_dssp HHHHHHHHHHHTCEEEESGGG-------------CCCTTSCHHHHHHHHHHHHHHHHHHCSSCCEEECCCCTTTCSSCCS T ss_pred HHHHHHHHHHHCCCEEEECCC-------------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC T ss_conf 999999987504865996688-------------8888899899999999999997766665312323444423200354 Q ss_pred HHHHHHHHHHHHCCCCEEEEC Q ss_conf 899999999985069289974 Q gi|254780558|r 282 KESAEVIFKEFAKRGLLFFDD 302 (396) Q Consensus 282 ~~~m~~vl~~l~~rgL~flDs 302 (396) ...+..+++.+...+++++-+ T Consensus 182 ~~~~~~li~~~~~~~~g~~~D 202 (290) T 2zvr_A 182 IDDALRILRKINSNRVGILAD 202 (290) T ss_dssp HHHHHHHHHHHCCTTEEEEEE T ss_pred HHHHHHHHHHHCCCCCCCCCC T ss_conf 899999999818854334356 No 39 >>3c3d_A 2-phospho-L-lactate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FO1; 2.50A {Methanosarcina mazei GO1} PDB: 2ffe_A* 3c3e_A* 3cgw_A (A:) Probab=42.45 E-value=13 Score=16.85 Aligned_cols=158 Identities=14% Similarity=0.027 Sum_probs=101.5 Q ss_pred EEEEEECCCCCCCHHHHHHHHHCCC-CCE--EEEECCCC-CHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCC Q ss_conf 5899973778771688999983793-508--98708987-6899999999859929998176656898778785544678 Q gi|254780558|r 172 RIAIVVSGLGISQTGTQRAINLLPA-NIT--LAFASNGN-SLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLKVT 247 (396) Q Consensus 172 riAIVIddlG~~~~~~~~ai~~LP~-~vT--~A~~P~~~-~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~~ 247 (396) .+.+..+| | .....+..|..... +|- +=..++.+ -..+..+..+++ ++++ -||+-+.++ T Consensus 135 ~l~a~~~d-G-~~~~ge~~i~~~~~~~I~~v~~~~~~~~~~~p~al~AI~~A--DlIv-------------~gPGSlyTS 197 (311) T 3c3d_A 135 STYIETAE-G-IXHFQDFWIGKRGEPDVRGVDIRGVSEASISPKVLEAFEKE--ENIL-------------IGPSNPITS 197 (311) T ss_dssp EEEEEESS-C-EEEHHHHHTTSTTCSCEEEEEEETTTTCCCCHHHHHHHHHC--CEEE-------------ECSSCTTTT T ss_pred EEEEEECC-C-CEECCCEEEEECCCCCEEEEECCCCCCCCCCHHHHHHHHHC--CCEE-------------ECCCCCHHH T ss_conf 79999789-9-85436578750478976998504787765799999999859--9589-------------748960655 Q ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCCCC--------CCCCHHHHHHHHHHHHC-----CCCEEEECCCCCCCHHHHHH Q ss_conf 998999999999998558935980012300--------00498999999999850-----69289974976322678989 Q gi|254780558|r 248 QTVQQLLNRLRYSLRRGTGYFGVMNYRGAM--------LLSNKESAEVIFKEFAK-----RGLLFFDDGSSPRNLTRVLA 314 (396) Q Consensus 248 ~~~~~~~~~l~~~l~~~p~~vGvnNhmGs~--------~t~~~~~m~~vl~~l~~-----rgL~flDs~Ts~~Sva~~~A 314 (396) .-+-=+..-+..++.+-| .|.|-|-|+.+ |+.. ...+++...+.+ =+.+.+|+..... ...- T Consensus 198 IlP~Llv~gI~eAI~~a~-kV~V~nl~~~~~~~get~~~~~~-~~v~~i~~~~~~~~~~~id~vl~d~~~~~d---~~~l 272 (311) T 3c3d_A 198 IGPIISLPGXRELLKKKK-VVAVSPIIGNAPVSGPAGKLXPA-CGIEVSSXGVAEYYQDFLDVFVFDERDRAD---EFAF 272 (311) T ss_dssp SHHHHHSTTHHHHHHTSE-EEEECCEETTEESSSTHHHHTGG-GTCCSSHHHHHHHHTTTCCEEEEEGGGCCC---HHHH T ss_pred HCCCCCCHHHHHHHHCCC-EEEECCCCCCCCCCCCCCCCCCC-CCCCCHHHHHHHHHHHHCCEEEECCCCCCC---HHHH T ss_conf 154012567999974098-18983566887653422122003-685450899998624137499987997114---9999 Q ss_pred HHHCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHC Q ss_conf 8709946984588628999999999999999999871 Q gi|254780558|r 315 PKLNLPYMVADLYLDDQVDRDKIREKLKGLEEIARTT 351 (396) Q Consensus 315 ~~~gvp~~~~dvfLD~~~~~~~I~~qL~~l~~~Ar~~ 351 (396) +++|+....+|+...+..|...+.+.|.++.+..+.+ T Consensus 273 ~~~Gi~vi~~d~~~~~rhD~~~La~al~~l~~~~~~~ 309 (311) T 3c3d_A 273 ERLGCHASRADTLXTSTEKSKELAEIVVQAFLEHHHH 309 (311) T ss_dssp HHHTCEEEEECCCCCSHHHHHHHHHHHHHHHHHC--- T ss_pred HHCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCC T ss_conf 9789959975763388200999999999999976113 No 40 >>2ps2_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9440A, enolase superfamily, PSI-2; 1.80A {Aspergillus oryzae RIB40} (A:128-363) Probab=41.35 E-value=22 Score=15.41 Aligned_cols=150 Identities=11% Similarity=0.092 Sum_probs=104.7 Q ss_pred CCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHH Q ss_conf 76899999999859929998176656898778785544678998999999999998558935980012300004989999 Q gi|254780558|r 207 NSLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLKVTQTVQQLLNRLRYSLRRGTGYFGVMNYRGAMLLSNKESAE 286 (396) Q Consensus 207 ~~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~~~~~~~~~~~l~~~l~~~p~~vGvnNhmGs~~t~~~~~m~ 286 (396) ....+.++.++++|+-.+ -+..+.+.++-+.++......+..-+-+.--...+++.+ ... T Consensus 21 e~~~~~~~~~~~~G~~~~------------------Kik~g~~~~~d~~~v~~~r~~~g~~~~l~~Dan~~~~~~--~A~ 80 (236) T 2ps2_A 21 EDMRARVAKYRAKGYKGQ------------------SVKISGEPVTDAKRITAALANQQPDEFFIVDANGKLSVE--TAL 80 (236) T ss_dssp HHHHHHHHHHHTTTCCEE------------------EEECCSCHHHHHHHHHHHTTTCCTTCEEEEECTTBCCHH--HHH T ss_pred CHHHHHHHHHHHHCCCCC------------------CCCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCHH--HHH T ss_conf 101467998865024433------------------233222201457788999987454202302311348989--998 Q ss_pred HHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCEEEEEEEECCCCCHHHHH-----------------HHHHHHHHHHH Q ss_conf 9999985069289974976322678989870994698458862899999999-----------------99999999998 Q gi|254780558|r 287 VIFKEFAKRGLLFFDDGSSPRNLTRVLAPKLNLPYMVADLYLDDQVDRDKIR-----------------EKLKGLEEIAR 349 (396) Q Consensus 287 ~vl~~l~~rgL~flDs~Ts~~Sva~~~A~~~gvp~~~~dvfLD~~~~~~~I~-----------------~qL~~l~~~Ar 349 (396) .+++.|.+.++.|+-.-.-...--..+.+..++|.+.-..+.+-.+-...|. ....+...+|+ T Consensus 81 ~~~~~l~~~~~~~iEeP~~~~~~~~~l~~~~~~pia~~E~~~~~~~~~~~i~~~a~d~i~~d~~~~GGit~~~~~~~~A~ 160 (236) T 2ps2_A 81 RLLRLLPHGLDFALEAPCATWRECISLRRKTDIPIIYDELATNEMSIVKILADDAAEGIDLKISKAGGLTRGRRQRDICL 160 (236) T ss_dssp HHHHHSCTTCCCEEECCBSSHHHHHHHHTTCCSCEEESTTCCSHHHHHHHHHHTCCSEEEEEHHHHTSHHHHHHHHHHHH T ss_pred HHHHHHHCCCEEEEECCCCCCHHHHHHHHCCCCEEECCCCCCCCCCHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHH T ss_conf 88986541783999545000058999875188105315434332212344430310013111336774069999999999 Q ss_pred HCCEEEEEEECC--HHHHHHHHHHHHHHH Q ss_conf 719489998088--788999999975688 Q gi|254780558|r 350 TTGQAIGVAVAF--DESIEVISQWLQQEH 376 (396) Q Consensus 350 ~~G~AI~igh~~--p~Ti~~L~~w~~~l~ 376 (396) ++|.-+.+++.. +.++.+-..+...+. T Consensus 161 ~~gi~v~~h~~~~~~i~~~a~~~~aa~~~ 189 (236) T 2ps2_A 161 AAGYSVSVQETCGSDIAFAAIVHLAQTIP 189 (236) T ss_dssp HHTCEEEEECSSCCHHHHHHHHHHHTTSC T ss_pred HCCCCEEECCCCCCHHHHHHHHHHHHHCC T ss_conf 75996777788878999999999998689 No 41 >>2ppg_A Putative isomerase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.49A {Sinorhizobium meliloti 1021} (A:148-379) Probab=39.42 E-value=23 Score=15.22 Aligned_cols=151 Identities=7% Similarity=-0.000 Sum_probs=101.2 Q ss_pred EEEECCCCCHH---HHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC Q ss_conf 98708987689---999999985992999817665689877878554467899899999999999855893598001230 Q gi|254780558|r 200 LAFASNGNSLD---RWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLKVTQTVQQLLNRLRYSLRRGTGYFGVMNYRGA 276 (396) Q Consensus 200 ~A~~P~~~~~~---~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~~~~~~~~~~~l~~~l~~~p~~vGvnNhmGs 276 (396) .+-..+..... +.++.+.++|+..+ -|.++...++...++......++.-+.+.=--.. T Consensus 12 ya~~~~~~~~e~~~~~~~~~~~~G~~~~------------------KiKvg~~~~~d~~~i~~ir~~~g~~~~l~lDaN~ 73 (232) T 2ppg_A 12 YISGLPEDTRAKRAELAAAWQAKGFSSF------------------KFASPVADDGVAKEXEILRERLGPAVRIACDXHW 73 (232) T ss_dssp EEECCCCSSHHHHHHHHHHHHHTTCCEE------------------EEEGGGCTTCHHHHHHHHHHHHCSSSEEEEECCS T ss_pred EEECCCCCCHHHHHHHHHHHHHCCCCCE------------------ECCCCCCCHHHHHHHHHHHHHHHHCHHHHHHCCC T ss_conf 1211564202467888998861476300------------------0012432101578999999975301012230133 Q ss_pred CCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCHH--HHHHHHHCCCEEEEEEEECCC-CCHHHHH--------------- Q ss_conf 0004989999999998506928997497632267--898987099469845886289-9999999--------------- Q gi|254780558|r 277 MLLSNKESAEVIFKEFAKRGLLFFDDGSSPRNLT--RVLAPKLNLPYMVADLYLDDQ-VDRDKIR--------------- 338 (396) Q Consensus 277 ~~t~~~~~m~~vl~~l~~rgL~flDs~Ts~~Sva--~~~A~~~gvp~~~~dvfLD~~-~~~~~I~--------------- 338 (396) +++-++. ..+++.|...+++|+-.-...+... ..+++..++|.+. |.. .+....+ T Consensus 74 ~~~~~~A--~~~~~~l~~~~~~~~EeP~~~~~~~~~~~l~~~~~ipia~-----dE~~~~~~~~~~~~~~~~~~ii~~~~ 146 (232) T 2ppg_A 74 AHTASEA--VALIKAXEPHGLWFAEAPVRTEDIDGLARVAASVSTAIAV-----GEEWRTVHDXVPRVARRALAIVQPEX 146 (232) T ss_dssp CCCHHHH--HHHHHHHGGGCCCEEESCSCTTCHHHHHHHHHHCSSEEEE-----CTTCCSHHHHHHHHHTTCCSEECCBH T ss_pred CCCCHHH--HHHHHHCCCCCCEEECCCCCCCCHHHHHHCCCCCCCCCCC-----CCCCCCCCCCHHHHHHCCCCEEECCC T ss_conf 4672455--3350110046845732774301224443013333466334-----54100011001344420000011233 Q ss_pred -----HHHHHHHHHHHHCCEEEEEEECC--HHHHHHHHHHHHHH Q ss_conf -----99999999998719489998088--78899999997568 Q gi|254780558|r 339 -----EKLKGLEEIARTTGQAIGVAVAF--DESIEVISQWLQQE 375 (396) Q Consensus 339 -----~qL~~l~~~Ar~~G~AI~igh~~--p~Ti~~L~~w~~~l 375 (396) ....++..+|+.+|.-+.+++.. ..++.+.......+ T Consensus 147 ~~GGl~~~~~i~~~a~~~g~~~~~~~~~~~~i~~~a~~~laa~~ 190 (232) T 2ppg_A 147 GHKGITQFXRIGAYAHVHHIKVIPHATIGAGIFLAASLQASAAL 190 (232) T ss_dssp HHHHHHHHHHHHHHHHHTTCEECCBCCSSCSHHHHHHHHHHHHC T ss_pred CCCCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHC T ss_conf 47785889887999998899799837877399999999999968 No 42 >>1nw3_A Histone methyltransferase DOT1L; HDOT1, histone lysine methyltransferase,; HET: SAM; 2.50A {Homo sapiens} (A:1-97) Probab=38.75 E-value=15 Score=16.47 Aligned_cols=75 Identities=15% Similarity=0.096 Sum_probs=51.2 Q ss_pred CCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCE-EEEECCCCC-CCCCHHHHHHHHHHHHC Q ss_conf 9929998176656898778785544678998999999999998558935-980012300-00498999999999850 Q gi|254780558|r 220 GQEAILQIPMQAFDESYNEDDSYTLKVTQTVQQLLNRLRYSLRRGTGYF-GVMNYRGAM-LLSNKESAEVIFKEFAK 294 (396) Q Consensus 220 G~EvllhlPMEp~~~~~~~pGp~~L~~~~~~~~~~~~l~~~l~~~p~~v-GvnNhmGs~-~t~~~~~m~~vl~~l~~ 294 (396) -.|.-||=|+-....-..||-+-.---.....||.+.++|+.+.+|... .+.||...- =|.+-..|..++....+ T Consensus 4 ~~eLkL~SPaGaep~vy~WPl~~g~~~~d~a~eIidtIrwVceD~pelk~a~en~~L~~yDt~~yesM~~LcdryNk 80 (97) T 1nw3_A 4 KLELRLKSPVGAEPAVYPWPLPVYDKHHDAAHEIIETIRWVCEEIPDLKLAMENYVLIDYDTKSFESMQRLCDKYNR 80 (97) T ss_dssp -CEEEECCTTSCCCEEEESSCCEEETTEEHHHHHHHHHHHHHHHCHHHHHHHSSSCCSCCCTTCHHHHHHHHHHHHH T ss_pred CEEEEEECCCCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH T ss_conf 45999827875554222688541110245511256779999986266677777778874066669999999999999 No 43 >>1yny_A D-hydantoinase, dhpase; TIM-barrel, binuclear metal-binding, hydrolase; 2.30A {Bacillus SP} (A:54-329,A:447-461) Probab=38.57 E-value=24 Score=15.13 Aligned_cols=129 Identities=10% Similarity=-0.032 Sum_probs=75.4 Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEECC--CCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCHH--HHHHHHHCCC Q ss_conf 678998999999999998558935980012--300004989999999998506928997497632267--8989870994 Q gi|254780558|r 245 KVTQTVQQLLNRLRYSLRRGTGYFGVMNYR--GAMLLSNKESAEVIFKEFAKRGLLFFDDGSSPRNLT--RVLAPKLNLP 320 (396) Q Consensus 245 ~~~~~~~~~~~~l~~~l~~~p~~vGvnNhm--Gs~~t~~~~~m~~vl~~l~~rgL~flDs~Ts~~Sva--~~~A~~~gvp 320 (396) .+....+++........ -.++.|+-=+| ++....|...|..+|+.+++.|+.++.---....+. .+-....|.. T Consensus 73 ~~~~~~~~l~el~~l~~--~~gv~~~k~~~~~~~~~~~d~~~l~~~l~~~~~~g~~v~vH~Ed~~~~~~~~~~~~~~g~~ 150 (291) T 1yny_A 73 IAEANDQVLEELESVIS--SEGITSLKVFMAYKNVFQADDETLFKTLVKAKELGALVQVHAENGDVLDYLTKKALAEGNT 150 (291) T ss_dssp CSCCCHHHHHHHHHHHH--TSCCCEEEEESCSTTTTCCCHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHHHHHHTTCC T ss_pred ECCCCCCCCHHHHHHHH--HCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEEHHCCCHHHHCCCCCCCCCCC T ss_conf 02455543102344455--3164300022002332012435555677778753971562000000120011110025765 Q ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCEEEEEEECC-HHHHHHHHHHHHHHHHCCCEE Q ss_conf 69845886289999999999999999998719489998088-788999999975688769189 Q gi|254780558|r 321 YMVADLYLDDQVDRDKIREKLKGLEEIARTTGQAIGVAVAF-DESIEVISQWLQQEHVRDVSV 382 (396) Q Consensus 321 ~~~~dvfLD~~~~~~~I~~qL~~l~~~Ar~~G~AI~igh~~-p~Ti~~L~~w~~~l~~~gi~l 382 (396) .. ..++.. .....-...+.++..+|+..|.-|-|.|.. ..+++.|. +.+++|+.+ T Consensus 151 ~~--~~~~~~-rp~~~E~~ai~~~~~la~~~g~~ihi~HiSt~~~l~li~----~ak~~g~~i 206 (291) T 1yny_A 151 DP--IYHAYT-RPPEAEGEATGRAIALTALAGSQLYVVHVSCASAVQRIA----EAREKGWNV 206 (291) T ss_dssp ST--THHHHT-SCHHHHHHHHHHHHHHHHHHTCCEEECSCCSHHHHHHHH----HHHHTTCCE T ss_pred CH--HHCCCC-CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH----HHHHCCCEE T ss_conf 50--001345-752025678888888764058631013343167789999----988709756 No 44 >>2vzs_A CSXA, EXO-beta-D-glucosaminidase; hydrolase, GH2, glucosamine, glycoside hydrolase; HET: GCS; 1.85A {Amycolatopsis orientalis} (A:335-674) Probab=38.39 E-value=24 Score=15.12 Aligned_cols=110 Identities=7% Similarity=-0.156 Sum_probs=54.2 Q ss_pred HHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCH-HHHHHHHHHHHHHCCC-- Q ss_conf 9983793508987089876899999999859929998176656898778785544678998-9999999999985589-- Q gi|254780558|r 190 AINLLPANITLAFASNGNSLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLKVTQTV-QQLLNRLRYSLRRGTG-- 266 (396) Q Consensus 190 ai~~LP~~vT~A~~P~~~~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~~~~~-~~~~~~l~~~l~~~p~-- 266 (396) .+.++. +..-=....+...++.+.|.+.|.-|++.++..........+.+.....+-.- +...+.+...+.+.-+ T Consensus 48 ~~k~~G--~N~iR~~~~~~~~~~~~~ad~~Gi~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~nhP 125 (340) T 2vzs_A 48 YVLNLG--LNTVRLEGHIEPDEFFDIADDLGVLTMPGWECCDKWEGQVNGEEKGEPWVESDYPIAKASMFSEAERLRDHP 125 (340) T ss_dssp HHHHTT--CCEEEEESCCCCHHHHHHHHHHTCEEEEECCSSSGGGTTTSTTSSSCCCCTTHHHHHHHHHHHHHHHHTTCT T ss_pred HHHHHC--CCEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC T ss_conf 998726--408990466999899999885399998633113432434566556755574568999999999999747936 Q ss_pred -C--EEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEEC Q ss_conf -3--59800123000049899999999985069289974 Q gi|254780558|r 267 -Y--FGVMNYRGAMLLSNKESAEVIFKEFAKRGLLFFDD 302 (396) Q Consensus 267 -~--vGvnNhmGs~~t~~~~~m~~vl~~l~~rgL~flDs 302 (396) . -.+.|-++..- .....|...++++...-.....+ T Consensus 126 svi~w~i~NE~~~~~-~~~~~~~~~~r~~d~~~~~~~~~ 163 (340) T 2vzs_A 126 SVISFHIGSDFAPDR-RIEQGYLDAMKAADFLLPVIPAA 163 (340) T ss_dssp TBCCEESCSSSCCCH-HHHHHHHHHHHHTTCCSCEESCS T ss_pred EEEEEECCCCCCCCH-HHHHHHHHHHHHHCCCCEECCCC T ss_conf 599995885567536-79999999998742534131355 No 45 >>3igz_B Cofactor-independent phosphoglycerate mutase; glycolysis, cobalt, isomerase; HET: 3PG 2PG; 1.90A {Leishmania mexicana} PDB: 3igy_B* (B:88-326) Probab=37.85 E-value=25 Score=15.06 Aligned_cols=65 Identities=15% Similarity=0.075 Sum_probs=35.6 Q ss_pred HHHHHHHCCCEEEEEEEECCC-CCHHHHHHHHHHHHHHHHHCC-------EEEEEEECC------HHHHHHHHHHHHHH Q ss_conf 898987099469845886289-999999999999999998719-------489998088------78899999997568 Q gi|254780558|r 311 RVLAPKLNLPYMVADLYLDDQ-VDRDKIREKLKGLEEIARTTG-------QAIGVAVAF------DESIEVISQWLQQE 375 (396) Q Consensus 311 ~~~A~~~gvp~~~~dvfLD~~-~~~~~I~~qL~~l~~~Ar~~G-------~AI~igh~~------p~Ti~~L~~w~~~l 375 (396) -++|++.|++-...+.|+|.. ..+.....-|.+++..-++.| .|=.+|+-| ..--++.++...-+ T Consensus 59 i~~a~~~gv~~V~vH~f~DGRDt~P~S~~~yi~~le~~l~~~~~~~~~g~IASv~GRYy~AMDR~D~rWeRv~~ay~al 137 (239) T 3igz_B 59 IEHAVKDGAKRIRVHALYDGRDVPDGSSFRFTDELEAVLAKVRQNGCDAAIASGGGRMFVTMDRYDADWSIVERGWRAQ 137 (239) T ss_dssp HHHHHHTTCCEEEEEEEECSSSSCTTTHHHHHHHHHHHHHHHHTTTCEEEEEEEEETTTSSCCCTTSCHHHHHHHHHHH T ss_pred HHHHHHCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCEEEECCCCCHHHHHHHHHHHHH T ss_conf 9999973998448999824666575138999999999988763047864898853315774265420167886764301 No 46 >>1c3p_A Protein (HDLP (histone deacetylase-like protein) ); alpha/beta fold, lyase; 1.80A {Aquifex aeolicus} (A:) Probab=37.66 E-value=25 Score=15.05 Aligned_cols=130 Identities=19% Similarity=0.139 Sum_probs=81.1 Q ss_pred CEEEEEECCCCCCCHHHHHHHHHCCCCCEEEEECCC-----CCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCC Q ss_conf 658999737787716889999837935089870898-----768999999998599299981766568987787855446 Q gi|254780558|r 171 ARIAIVVSGLGISQTGTQRAINLLPANITLAFASNG-----NSLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLK 245 (396) Q Consensus 171 ~riAIVIddlG~~~~~~~~ai~~LP~~vT~A~~P~~-----~~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~ 245 (396) .||+||=-|+=.+ .+|++.+..=|--+|++|--+. +.....-+.....|.-..+.+|+.+ T Consensus 160 ~rv~iiD~DvHhG-nGtq~if~~d~~Vl~~S~H~~~~~~f~p~tg~~~~~G~g~g~g~~~Nipl~~-------------- 224 (375) T 1c3p_A 160 KRILYIDLDAHHC-DGVQEAFYDTDQVFVLSLHQSPEYAFPFEKGFLEEIGEGKGKGYNLNIPLPK-------------- 224 (375) T ss_dssp CCEEEEECSSSCC-HHHHHHHTTCSSEEEEEEEECTTTSTTSSSCCTTCCCCGGGTTSEEEEEECT-------------- T ss_pred CCEEEEECCCCCC-CCCEEEEEECCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCC-------------- T ss_conf 7448874355577-7615676505765420111577777888887723367876665124035886-------------- Q ss_pred CCCCHHHHHHHHHHHHH----H-CCCCE----EEEECCCCCCC---CCH---HHHHHHHHHHHCCCCEEEECCCCCCCHH Q ss_conf 78998999999999998----5-58935----98001230000---498---9999999998506928997497632267 Q gi|254780558|r 246 VTQTVQQLLNRLRYSLR----R-GTGYF----GVMNYRGAMLL---SNK---ESAEVIFKEFAKRGLLFFDDGSSPRNLT 310 (396) Q Consensus 246 ~~~~~~~~~~~l~~~l~----~-~p~~v----GvnNhmGs~~t---~~~---~~m~~vl~~l~~rgL~flDs~Ts~~Sva 310 (396) +++.++....++..+. . =|.++ |.-.|.|..+. =+. ..|-..+..++.+-++++--+-+.++++ T Consensus 225 -g~~d~~y~~~~~~~~~p~~~~f~Pd~I~~~aG~D~~~~Dplg~~~ls~~~~~~~~~~i~~~~~~~v~vleGGY~~~~~~ 303 (375) T 1c3p_A 225 -GLNDNEFLFALEKSLEIVKEVFEPEVYLLQLGTDPLLEDYLSKFNLSNVAFLKAFNIVREVFGEGVYLGGGGYHPYALA 303 (375) T ss_dssp -TCCHHHHHHHHHHHHHHHHHHCCCSEEEEECCSTTBTTCTTCSCCBCHHHHHHHHHHHHHHHCSCEEECCCCCCHHHHH T ss_pred -CCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHH T ss_conf -4563899999998679999866887899967737888786789868888999999999985899699975878367899 Q ss_pred HHHHHH Q ss_conf 898987 Q gi|254780558|r 311 RVLAPK 316 (396) Q Consensus 311 ~~~A~~ 316 (396) ...+.- T Consensus 304 ~~~~~~ 309 (375) T 1c3p_A 304 RAWTLI 309 (375) T ss_dssp HHHHHH T ss_pred HHHHHH T ss_conf 999999 No 47 >>2az4_A Hypothetical protein EF2904; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Enterococcus faecalis V583} (A:228-381) Probab=35.90 E-value=26 Score=14.87 Aligned_cols=109 Identities=17% Similarity=0.156 Sum_probs=57.6 Q ss_pred CCCEEEEECCCCCHHHHHHHHHHCCCCEEEECCC-----CCCCC--C-CCCCCCCC--CC--CCCCHHHHHHHHH----- Q ss_conf 3508987089876899999999859929998176-----65689--8-77878554--46--7899899999999----- Q gi|254780558|r 196 ANITLAFASNGNSLDRWMKEAKKKGQEAILQIPM-----QAFDE--S-YNEDDSYT--LK--VTQTVQQLLNRLR----- 258 (396) Q Consensus 196 ~~vT~A~~P~~~~~~~~~~~Ar~~G~EvllhlPM-----Ep~~~--~-~~~pGp~~--L~--~~~~~~~~~~~l~----- 258 (396) .-|.+++ |+.+..+.++.+++.|+.+.+..=+ +-.+. + ...+.-+. |. .-.+.+++.+.-. T Consensus 27 ~~V~v~~--~asNieRl~~i~~~agR~lVv~~~~a~il~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~i~~~~~~~l~~ 104 (154) T 2az4_A 27 RQITFNG--YPANVERFAKIIEKSPRTVVLEANMAALLLEVFGIEVRYYYAESGKIPELNPALEIPYDTLLKDKTDYLWQ 104 (154) T ss_dssp SCEEEEE--CTTCHHHHHHHHHHCSSEEEEEHHHHHHHHHHHCCCCEEECSSSSCCTTSCGGGBCCHHHHHHCSSSEEEE T ss_pred CEEECCC--CCCHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCHHHEEECCCCCCCC T ss_conf 5020243--31249999999998299699966899999999997567555776651557887658975687525555000 Q ss_pred --HHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCC Q ss_conf --999855893598001230000498999999999850692899749763 Q gi|254780558|r 259 --YSLRRGTGYFGVMNYRGAMLLSNKESAEVIFKEFAKRGLLFFDDGSSP 306 (396) Q Consensus 259 --~~l~~~p~~vGvnNhmGs~~t~~~~~m~~vl~~l~~rgL~flDs~Ts~ 306 (396) ..++..+.=.-+.--|+.-+..++.....++..|...|.=|++=.||. T Consensus 105 ~~~~ld~l~~g~~~I~S~~~p~~~~e~~~~~~~n~l~~~g~~~~~iH~SG 154 (154) T 2az4_A 105 VVNQFDNLQEGSLYIHSDAQPLGDFDPQYRVFLDLLAKKDITFVRLACSG 154 (154) T ss_dssp CCSCGGGSCTTCEEEEESCSSCSTTSHHHHHHHHHHHHTTCEEEECCCCS T ss_pred HHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECC T ss_conf 22212113567479996575789711788999889863896799988348 No 48 >>3ilx_A First ORF in transposon ISC1904; sulfolobus solfataricus P2, structural genomics, PSI-2, protein structure initiative; 2.00A {Sulfolobus solfataricus} (A:1-101) Probab=35.41 E-value=27 Score=14.82 Aligned_cols=52 Identities=17% Similarity=0.149 Sum_probs=23.8 Q ss_pred HHHHHHHHHHHHHHCCEEEE-EEECCHHHHHHHHHHHHHHHHCCCEEEEHHHH Q ss_conf 99999999999987194899-98088788999999975688769189967774 Q gi|254780558|r 337 IREKLKGLEEIARTTGQAIG-VAVAFDESIEVISQWLQQEHVRDVSVVPLSCL 388 (396) Q Consensus 337 I~~qL~~l~~~Ar~~G~AI~-igh~~p~Ti~~L~~w~~~l~~~gi~lVpvS~l 388 (396) |..|++.+...|.++|.-+- ........-..+.+|+..++...+..+-+..+ T Consensus 20 i~~Q~~~l~~~a~~~~~~~~e~~s~~~~~R~~~~~~l~~~~~g~~d~iiv~~~ 72 (101) T 3ilx_A 20 LANQVKYLEEQVKEYDLVITDIGSGLNXKRKGFLKLLRXILNNEVSRVITAYP 72 (101) T ss_dssp HHHHHHHHHHHCSCCSEEEEEESCTTCTTCHHHHHHHHHHHTTCEEEEEESSH T ss_pred HHHHHHHHHHHCHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEC T ss_conf 99999999984710343533353653569920899999997798418999843 No 49 >>3bdk_A D-mannonate dehydratase; xylose isomerase-like TIM barrel, lyase; HET: DNO; 2.50A {Streptococcus suis} PDB: 3ban_A* 3dbn_A* 3fvm_A (A:) Probab=35.06 E-value=27 Score=14.79 Aligned_cols=56 Identities=9% Similarity=0.091 Sum_probs=34.7 Q ss_pred CCCHHHHHHHHHHHHHH-------CCCCEEEEECCC-------CCCCCCHHHHHHHHHHHHCCCCEEE-EC Q ss_conf 89989999999999985-------589359800123-------0000498999999999850692899-74 Q gi|254780558|r 247 TQTVQQLLNRLRYSLRR-------GTGYFGVMNYRG-------AMLLSNKESAEVIFKEFAKRGLLFF-DD 302 (396) Q Consensus 247 ~~~~~~~~~~l~~~l~~-------~p~~vGvnNhmG-------s~~t~~~~~m~~vl~~l~~rgL~fl-Ds 302 (396) +.+.++..+++...+.. ..-.+++=||.+ ..+..+...+..+++.+...++.+. |. T Consensus 188 ~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~le~~~~~~~~~~~~~~~~t~~~~~~ll~~v~~~~~gl~~D~ 258 (386) T 3bdk_A 188 NISEEDLWANLEYFIKAILPTAEEAGVKMAIHPDDPPYGIFGLPRIITGQEAVERFLNLYDSEHNGITMCV 258 (386) T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHSSSCEEEECCCSSSSCCTTCCCCCCSHHHHHHHHHTTCSTTEEEEEEH T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCEEECHHHHHHHHHHCCCCCCEEEECC T ss_conf 99999999999999999999999759489980479975647887553119999999984696002589736 No 50 >>2k6x_A Sigma-A, RNA polymerase sigma factor RPOD; DNA-binding, transcription, transcription regulation; NMR {Thermotoga maritima} (A:) Probab=34.57 E-value=9.9 Score=17.56 Aligned_cols=52 Identities=15% Similarity=0.268 Sum_probs=36.3 Q ss_pred HHHHHHHHHHHHHHHHCCEEEE--EEECCHH-----HHHHHHHHHHHHHHCCCEEEEHH Q ss_conf 9999999999999987194899--9808878-----89999999756887691899677 Q gi|254780558|r 335 DKIREKLKGLEEIARTTGQAIG--VAVAFDE-----SIEVISQWLQQEHVRDVSVVPLS 386 (396) Q Consensus 335 ~~I~~qL~~l~~~Ar~~G~AI~--igh~~p~-----Ti~~L~~w~~~l~~~gi~lVpvS 386 (396) .....++.+|..+.|++|+.-- |--..|. +-+.+..++..|...||.+|--+ T Consensus 5 ~~~~~~ik~Li~~GK~~G~LTy~EI~d~Lp~~~~~~~~eqid~i~~~L~~~GI~Vve~~ 63 (72) T 2k6x_A 5 PQIERRIKKLISLGKKKGYITYEDIDKAFPPDFEGFDTNLIERIHEELEKHGINIVENE 63 (72) T ss_dssp HHHHHHHHHHHHHHHHHSSCBHHHHHHHCSCSCSSCCHHHHHHHHHHHHHTCCCCBCCS T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCEEECCC T ss_conf 89999999999987626848599999876665441699999999999998898672489 No 51 >>2rdx_A Mandelate racemase/muconate lactonizing enzyme, putative; enolase, structural genomics, PSI, protein structure initiative, nysgrc; 2.00A {Roseovarius nubinhibens ism} (A:129-355) Probab=34.06 E-value=28 Score=14.69 Aligned_cols=138 Identities=9% Similarity=0.052 Sum_probs=95.8 Q ss_pred CHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHH Q ss_conf 68999999998599299981766568987787855446789989999999999985589359800123000049899999 Q gi|254780558|r 208 SLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLKVTQTVQQLLNRLRYSLRRGTGYFGVMNYRGAMLLSNKESAEV 287 (396) Q Consensus 208 ~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~~~~~~~~~~~l~~~l~~~p~~vGvnNhmGs~~t~~~~~m~~ 287 (396) ...+.++.+++.|+-.+ -+..+.+.++..++++.....++.-+.+.--...+++-+. ... T Consensus 20 ~~~~~~~~~~~~G~~~~------------------K~K~g~~~~~d~~~i~~ir~~~g~~~~l~~Dan~~~~~~~--a~~ 79 (227) T 2rdx_A 20 ETRAELARHRAAGYRQF------------------QIKVGADWQSDIDRIRACLPLLEPGEKAMADANQGWRVDN--AIR 79 (227) T ss_dssp HHHHHHHHHHHTTCCEE------------------EEECCSCHHHHHHHHHHHGGGSCTTCEEEEECTTCSCHHH--HHH T ss_pred CCCCCCHHHHHHCCCCE------------------EEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHH--HHH T ss_conf 31111001333303320------------------2330367530146777887643101122123343443024--567 Q ss_pred HHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCEEEEEEEECCC-CCHHHHHH---------------------HHHHHH Q ss_conf 99998506928997497632267898987099469845886289-99999999---------------------999999 Q gi|254780558|r 288 IFKEFAKRGLLFFDDGSSPRNLTRVLAPKLNLPYMVADLYLDDQ-VDRDKIRE---------------------KLKGLE 345 (396) Q Consensus 288 vl~~l~~rgL~flDs~Ts~~Sva~~~A~~~gvp~~~~dvfLD~~-~~~~~I~~---------------------qL~~l~ 345 (396) +++.|.+.+++|+..-...... ..+.+...+|.+. |.. .+...++. ...++. T Consensus 80 ~~~~l~~~~l~~~E~P~~~~~~-~~l~~~~~~pia~-----dE~~~~~~~~~~~i~~~~~d~~~~~~~~~GGi~~~~~~~ 153 (227) T 2rdx_A 80 LARATRDLDYILEQPCRSYEEC-QQVRRVADQPMKL-----DECVTGLHMAQRIVADRGAEICCLKISNLGGLSKARRTR 153 (227) T ss_dssp HHHHTTTSCCEEECCSSSHHHH-HHHHTTCCSCEEE-----CTTCCSHHHHHHHHHHTCCSEEEEETTTTTSHHHHHHHH T ss_pred HHHHHHCCCCCCCCCCCHHHHH-HHHHHHHHHHCCC-----CCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCHHHHHHHH T ss_conf 8876320221212322012345-5666531000003-----564100011120221133433322323577278999999 Q ss_pred HHHHHCCEEEEEEECC--HHHHHHHHHH Q ss_conf 9998719489998088--7889999999 Q gi|254780558|r 346 EIARTTGQAIGVAVAF--DESIEVISQW 371 (396) Q Consensus 346 ~~Ar~~G~AI~igh~~--p~Ti~~L~~w 371 (396) .+|+.+|.-+.+++.. ..+..+-..+ T Consensus 154 ~~a~~~gi~~~~~~~~~~~i~~~~~~hl 181 (227) T 2rdx_A 154 DFLIDNRMPVVAEDSWGGEIASAAVAHF 181 (227) T ss_dssp HHHHHTTCCEEEECSBCSHHHHHHHHHH T ss_pred HHHHHCCCCEECCCCCCCHHHHHHHHHH T ss_conf 9999849827018988878999999999 No 52 >>1mxg_A Alpha amylase; hyperthermostable, family 13 glycosyl hydrolase, (beta/alpha)8-barrel; HET: ACR ETE; 1.60A {Pyrococcus woesei} (A:1-109,A:168-337) Probab=34.02 E-value=28 Score=14.68 Aligned_cols=21 Identities=24% Similarity=0.330 Sum_probs=14.0 Q ss_pred CHHHHHHHHHHCCCCEEEECC Q ss_conf 689999999985992999817 Q gi|254780558|r 208 SLDRWMKEAKKKGQEAILQIP 228 (396) Q Consensus 208 ~~~~~~~~Ar~~G~EvllhlP 228 (396) +.+++++.||+.|..|++-+- T Consensus 88 e~~~lv~~~h~~gi~vi~D~V 108 (279) T 1mxg_A 88 ELVRLIQTAHAYGIKVIADVV 108 (279) T ss_dssp HHHHHHHHHHHTTCEEEEEEC T ss_pred HHHHHHHHHHHCCCEEEEEEC T ss_conf 999999999987999999833 No 53 >>1lxj_A YBL001C, hypothetical 11.5KDA protein in HTB2-NTH2 intergenic region; hypothetical protein, structural genomics, PSI; 1.80A {Saccharomyces cerevisiae} (A:) Probab=33.60 E-value=28 Score=14.71 Aligned_cols=78 Identities=5% Similarity=0.040 Sum_probs=49.9 Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCEEEEEEEECC Q ss_conf 99999999999855893598001230000498999999999850692899749763226789898709946984588628 Q gi|254780558|r 251 QQLLNRLRYSLRRGTGYFGVMNYRGAMLLSNKESAEVIFKEFAKRGLLFFDDGSSPRNLTRVLAPKLNLPYMVADLYLDD 330 (396) Q Consensus 251 ~~~~~~l~~~l~~~p~~vGvnNhmGs~~t~~~~~m~~vl~~l~~rgL~flDs~Ts~~Sva~~~A~~~gvp~~~~dvfLD~ 330 (396) .+........+.. .|++..+|.-.|.=+.-+..+|..+++ +.+..-+.|.+...-.+=||. T Consensus 23 s~~Va~~i~vi~~----sGl~y~v~pmgT~IEG~~dev~~~v~~---------------~~e~~~~~G~~RV~t~iKid~ 83 (104) T 1lxj_A 23 SDFVALIEKKIRE----SPLKSTLHSAGTTIEGPWDDVXGLIGE---------------IHEYGHEKGYVRVHTDIRVGT 83 (104) T ss_dssp HHHHHHHHHHHHT----SSSEEEEETTEEEEEEEHHHHHHHHHH---------------HHHHHHHTTCCEEEEEEEEEC T ss_pred HHHHHHHHHHHHH----CCCCEEECCCCCEEECCHHHHHHHHHH---------------HHHHHHHCCCCEEEEEEEEEC T ss_conf 9999999999997----599757669834797679999999999---------------999999769985999999762 Q ss_pred CCC-HHHHHHHHHHHHHH Q ss_conf 999-99999999999999 Q gi|254780558|r 331 QVD-RDKIREKLKGLEEI 347 (396) Q Consensus 331 ~~~-~~~I~~qL~~l~~~ 347 (396) ..| ...|..+++..++. T Consensus 84 R~dk~~ti~~Kv~~v~~~ 101 (104) T 1lxj_A 84 RTDKHQTAQDKIDVVLKK 101 (104) T ss_dssp CSSCCCCHHHHHHHHHHH T ss_pred CCCCCCCHHHHHHHHHHH T ss_conf 589877989999999998 No 54 >>2ftw_A Dihydropyrimidine amidohydrolase; (beta-alpha)8-barrel, beta-sandwich; HET: KCX; 2.05A {Dictyostelium discoideum} (A:62-339,A:456-468) Probab=32.58 E-value=30 Score=14.53 Aligned_cols=126 Identities=10% Similarity=-0.023 Sum_probs=71.3 Q ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEECC--CCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHH---HHHCCCE Q ss_conf 8998999999999998558935980012--3000049899999999985069289974976322678989---8709946 Q gi|254780558|r 247 TQTVQQLLNRLRYSLRRGTGYFGVMNYR--GAMLLSNKESAEVIFKEFAKRGLLFFDDGSSPRNLTRVLA---PKLNLPY 321 (396) Q Consensus 247 ~~~~~~~~~~l~~~l~~~p~~vGvnNhm--Gs~~t~~~~~m~~vl~~l~~rgL~flDs~Ts~~Sva~~~A---~~~gvp~ 321 (396) .....+....+.... -.+++|+.=+| +.....+...|..+|++++..|+.++----... +..... +..|... T Consensus 75 ~~~~~~~~~~~~~~~--~~Gv~~~k~~~~~~~~~~~~~~~l~~~~e~~~~~~~~v~vH~Ed~~-~~~~~~~~~~~~g~~~ 151 (291) T 2ftw_A 75 WWSEQVSREMEILVK--ERGVNSFXCFMAYKNSFMVTDQEMYHIFKRCKELGAIAQVHAENGD-MVFEGQKKMLEMGITG 151 (291) T ss_dssp SCCHHHHHHHHHHHH--HSCCCEEEEESSCTTTTBCCHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHHHHHHHTTCCS T ss_pred CCCCCCCHHHHHHHH--HCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCC-HHHHHHHHHHCCCCCC T ss_conf 343443102223455--3163045420124455210267888999987533864664110000-1234444420167654 Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCEEEEEEECC-HHHHHHHHHHHHHHHHCCCEE Q ss_conf 9845886289999999999999999998719489998088-788999999975688769189 Q gi|254780558|r 322 MVADLYLDDQVDRDKIREKLKGLEEIARTTGQAIGVAVAF-DESIEVISQWLQQEHVRDVSV 382 (396) Q Consensus 322 ~~~dvfLD~~~~~~~I~~qL~~l~~~Ar~~G~AI~igh~~-p~Ti~~L~~w~~~l~~~gi~l 382 (396) ...++...+. .+=...+.++..+|+..|.-|-|.|.. +.+++.+.+ .+.+|+.+ T Consensus 152 --~~~~~~~rp~-~aE~~ai~~~~~la~~~g~~i~i~HiSs~~ai~li~~----a~~~G~~v 206 (291) T 2ftw_A 152 --PEGHELSRPE-ALEAEATNRAIVIADSVCTPVYIVHVQSIGAADVICK----HRKEGVRV 206 (291) T ss_dssp --THHHHHHSCT-HHHHHHHHHHHHHHHHHTCCEEECSCCCHHHHHHHHH----HHHTTCCE T ss_pred --CCCCCCCCCH-HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHH----HHHCCCEE T ss_conf --3223221100-3666643222210222223322333321001012445----76438457 No 55 >>3jr7_A Uncharacterized EGV family protein COG1307; structural genomics, PSI2, MCSG, protein structure initiative; HET: PG6; 2.00A {Ruminococcus gnavus atcc 29149} (A:1-45,A:85-174) Probab=31.78 E-value=31 Score=14.45 Aligned_cols=66 Identities=14% Similarity=0.051 Sum_probs=39.4 Q ss_pred CCCCCCCCCHHHHHHHHHHH----HCCCCEEEECCCCCCCHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHHH Q ss_conf 12300004989999999998----506928997497632267898987099469845886289999999999999999 Q gi|254780558|r 273 YRGAMLLSNKESAEVIFKEF----AKRGLLFFDDGSSPRNLTRVLAPKLNLPYMVADLYLDDQVDRDKIREKLKGLEE 346 (396) Q Consensus 273 hmGs~~t~~~~~m~~vl~~l----~~rgL~flDs~Ts~~Sva~~~A~~~gvp~~~~dvfLD~~~~~~~I~~qL~~l~~ 346 (396) |..|.+.+.-..+..+.+.+ ....+..+||++.....+.-+.... ..++.-.+.+.|...++++.. T Consensus 64 ~ISs~LSGTynsA~~Aa~~l~ee~~~~kI~VIDSktvS~g~GllV~eAa--------kl~e~G~sieeIv~~le~~~~ 133 (135) T 3jr7_A 64 TLSAELSGSYNSAVLGKNLYEEEYGEKQIHVFNSRSASVGETLIALKVQ--------QCEKAGXTFEEVVESVECYIE 133 (135) T ss_dssp ESCTTTCSHHHHHHHHHHHHHHHHCCCEEEEEECSSCTHHHHHHHHHHH--------HHHHTTCCHHHHHHHHHHHHH T ss_pred ECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH--------HHHHCCCCHHHHHHHHHHHHH T ss_conf 2566526278999999999986669972999879863477899999999--------999869999999999999986 No 56 >>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} (A:1-116) Probab=31.55 E-value=31 Score=14.43 Aligned_cols=42 Identities=14% Similarity=0.194 Sum_probs=37.2 Q ss_pred CHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCEE Q ss_conf 989999999998506928997497632267898987099469 Q gi|254780558|r 281 NKESAEVIFKEFAKRGLLFFDDGSSPRNLTRVLAPKLNLPYM 322 (396) Q Consensus 281 ~~~~m~~vl~~l~~rgL~flDs~Ts~~Sva~~~A~~~gvp~~ 322 (396) --+....+.++|.++|+..+|++.-.........+++|++.. T Consensus 68 PlPiVaaI~~~L~~eGlvk~~~gi~LTekG~~lVe~lgi~~~ 109 (116) T 2qm3_A 68 PLPLVVAILESLNELGYVTFEDGVKLTEKGEELVAEYGIGKR 109 (116) T ss_dssp CHHHHHHHHHHHHHTTSEECSSSSEECHHHHHHHHHHTCCCC T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCC T ss_conf 556799999999983047764111120216889866156531 No 57 >>2o7s_A DHQ-SDH, bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase; NADPH, dehydroshikimate, bifunctional enzyme, oxidoreductase; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A* (A:1-219) Probab=29.57 E-value=34 Score=14.22 Aligned_cols=97 Identities=9% Similarity=0.098 Sum_probs=43.6 Q ss_pred CCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCC-HHHH--HHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHH Q ss_conf 23000049899999999985069289974976322-6789--89870994698458862899999999999999999987 Q gi|254780558|r 274 RGAMLLSNKESAEVIFKEFAKRGLLFFDDGSSPRN-LTRV--LAPKLNLPYMVADLYLDDQVDRDKIREKLKGLEEIART 350 (396) Q Consensus 274 mGs~~t~~~~~m~~vl~~l~~rgL~flDs~Ts~~S-va~~--~A~~~gvp~~~~dvfLD~~~~~~~I~~qL~~l~~~Ar~ 350 (396) -|++|..++..--.+++.+-+.|-.|+|=--.... .... .++..+.....-.-.++..++.+.+...+++ +++ T Consensus 70 eGG~~~~~~~~~~~ll~~~~~~~~d~iDiE~~~~~~~~~~~~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~----~~~ 145 (219) T 2o7s_A 70 EGGQYEGDENERRDVLRLAMELGADYIDVELQVASEFIKSIDGKKPGKFKVIVSSHNYQNTPSVEDLDGLVAR----IQQ 145 (219) T ss_dssp GTSSBCSCHHHHHHHHHHHHHHTCSEEEEEHHHHHHHHHHTTTCCCTTCEEEEEEECSSCCCCHHHHHHHHHH----HHT T ss_pred HCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHH----HHH T ss_conf 4898889999999999999996999999978875789999998404998899996679998688999999999----998 Q ss_pred CCEEEE-EE-ECC-HHHHHHHHHHHHH Q ss_conf 194899-98-088-7889999999756 Q gi|254780558|r 351 TGQAIG-VA-VAF-DESIEVISQWLQQ 374 (396) Q Consensus 351 ~G~AI~-ig-h~~-p~Ti~~L~~w~~~ 374 (396) .|.-|. |. .+. +.-+..|.++..+ T Consensus 146 ~gadi~Kia~~~~~~~D~~~ll~~~~~ 172 (219) T 2o7s_A 146 TGADIVKIATTAVDIADVARMFHITSK 172 (219) T ss_dssp TTCSEEEEEEECSSGGGHHHHHHHHHH T ss_pred HCCCHHHHHHCCCCHHHHHHHHHHHHH T ss_conf 487766551155988899999999754 No 58 >>1gkp_A Hydantoinase; hydrolase, dihydropyrimidinase, cyclic amidase; HET: KCX EPE; 1.29A {Thermus SP} (A:54-328,A:445-458) Probab=29.43 E-value=34 Score=14.20 Aligned_cols=112 Identities=9% Similarity=-0.012 Sum_probs=68.2 Q ss_pred CCCCEEEEE--CCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCHHH--HHHHHHCCCEEEEEEEECCCCCHHHHHH Q ss_conf 589359800--123000049899999999985069289974976322678--9898709946984588628999999999 Q gi|254780558|r 264 GTGYFGVMN--YRGAMLLSNKESAEVIFKEFAKRGLLFFDDGSSPRNLTR--VLAPKLNLPYMVADLYLDDQVDRDKIRE 339 (396) Q Consensus 264 ~p~~vGvnN--hmGs~~t~~~~~m~~vl~~l~~rgL~flDs~Ts~~Sva~--~~A~~~gvp~~~~dvfLD~~~~~~~I~~ 339 (396) ..+.+++.. ..+..+..|...+..+|+.+++.|..++----...-... .-....|.. .-..+++. .....=.. T Consensus 89 ~~~~~~~~~~~s~~~~~~~d~~~l~~~l~~~~~~g~~v~vH~Ed~~l~~~~~~~~~~~g~~--~~~~~~~~-rp~~aE~~ 165 (289) T 1gkp_A 89 ADGISSFXIFLSYKNFFGVDDGEMYQTLRLAKELGVIVTAHCENAELVGRLQQKLLSEGKT--GPEWHEPS-RPEAVEAE 165 (289) T ss_dssp HTTCCEEEEEECSTTTTBCCHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHHHTTCC--SGGGTTTT-SCHHHHHH T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHCCCC--CCCCCCCC-CCHHHHHH T ss_conf 0454300111111233221035667666554215862133223466677665555533764--31123555-63256776 Q ss_pred HHHHHHHHHHHCCEEEEEEECC-HHHHHHHHHHHHHHHHCCCEE Q ss_conf 9999999998719489998088-788999999975688769189 Q gi|254780558|r 340 KLKGLEEIARTTGQAIGVAVAF-DESIEVISQWLQQEHVRDVSV 382 (396) Q Consensus 340 qL~~l~~~Ar~~G~AI~igh~~-p~Ti~~L~~w~~~l~~~gi~l 382 (396) .+.+...+|+..|.-|-|.|.. .++++.|. +.+++|+.+ T Consensus 166 ai~~~~~la~~~~~~i~i~HiSt~~al~~I~----~ak~~g~~v 205 (289) T 1gkp_A 166 GTARFATFLETTGATGYVVHLSCKPALDAAM----AAKARGVPI 205 (289) T ss_dssp HHHHHHHHHHHHTCEEEECSCCSHHHHHHHH----HHHHTTCCE T ss_pred HHHHCCCCCCCCCCEEECCCCCCCHHHHHHH----HHHCCCCCC T ss_conf 5431122222321100012222200244444----321035421 No 59 >>1uv7_A General secretion pathway protein M; transport; HET: MSE; 1.7A {Vibrio cholerae} (A:) Probab=29.41 E-value=34 Score=14.20 Aligned_cols=43 Identities=12% Similarity=0.132 Sum_probs=31.3 Q ss_pred HHHHHHHCCEEEEEEECC---------HHHHHHHHHHHHHHH-HCCCEEEEHH Q ss_conf 999998719489998088---------788999999975688-7691899677 Q gi|254780558|r 344 LEEIARTTGQAIGVAVAF---------DESIEVISQWLQQEH-VRDVSVVPLS 386 (396) Q Consensus 344 l~~~Ar~~G~AI~igh~~---------p~Ti~~L~~w~~~l~-~~gi~lVpvS 386 (396) +.+-|+++|..|.--.|. ++.++.|..|+..|+ ..||.+.-++ T Consensus 29 v~~SA~~~gl~i~R~qp~g~~vqV~l~~v~F~~Ll~WL~~Le~~~GI~V~~l~ 81 (110) T 1uv7_A 29 ITNSTRQFNIELIRVQPRGEXXQVWIQPLPFSQLVSWIAYLQERQGVSVDAID 81 (110) T ss_dssp HHHHHHHHTCCEEEEEECSSEEEEEECCBCHHHHHHHHHHHHHHSCCEEEEEE T ss_pred HHHHHHHCCCCEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHCCEEEEEEE T ss_conf 99999976983899658898699998897999999999999984793699988 No 60 >>2uva_G Fatty acid synthase beta subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; HET: FMN; 3.10A {Thermomyces lanuginosus} PDB: 2uvc_G* (G:1863-1988) Probab=28.95 E-value=34 Score=14.15 Aligned_cols=60 Identities=10% Similarity=0.002 Sum_probs=50.5 Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC--CC--CCCCHHHHHHHHHHHHCCCCEEE Q ss_conf 55446789989999999999985589359800123--00--00498999999999850692899 Q gi|254780558|r 241 SYTLKVTQTVQQLLNRLRYSLRRGTGYFGVMNYRG--AM--LLSNKESAEVIFKEFAKRGLLFF 300 (396) Q Consensus 241 p~~L~~~~~~~~~~~~l~~~l~~~p~~vGvnNhmG--s~--~t~~~~~m~~vl~~l~~rgL~fl 300 (396) ..-+.++.+.++++..+.......++.+.+-|+-+ +. +..+...++.+...|+++|..+. T Consensus 8 g~m~av~~~~~~v~~~~~~~~~~~~~~v~IA~~Nsp~~q~VisG~~~ai~~~~~~l~~~g~~~~ 71 (126) T 2uva_G 8 PSRISPTFTEQALQYVVENIAEVTGWLLEIVNYNVANMQYVAAGDLRALDTLANVLNILKMQKI 71 (126) T ss_dssp GGGTCTTCCHHHHHHHHHHHHHHSCSCEEEEEEEETTTEEEEEEBTTHHHHHHHHHHHHHHTTC T ss_pred HHHCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCEEEECCCHHHHHHHHHHHHHHHHCCC T ss_conf 6563898788999999999997108648996034588467762618899999987756642333 No 61 >>3g41_A Amino acid ABC transporter, periplasmic amino acid-binding protein; aminoacid transporter, structural genomics, bacabs EU FP6 programme; HET: ARG; 2.10A {Chlamydophila pneumoniae} (A:1-97,A:189-246) Probab=28.21 E-value=35 Score=14.07 Aligned_cols=29 Identities=31% Similarity=0.360 Sum_probs=21.1 Q ss_pred CEEEEEEECCHHHHHHHHHHHHHHHHCCC Q ss_conf 94899980887889999999756887691 Q gi|254780558|r 352 GQAIGVAVAFDESIEVISQWLQQEHVRDV 380 (396) Q Consensus 352 G~AI~igh~~p~Ti~~L~~w~~~l~~~gi 380 (396) |+.||+..-+|+-+..+.+-+.+|++.|+ T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (155) T 3g41_A 103 GCGLGVAKDRPEEIQTIQQAITDLKSEGV 131 (155) T ss_dssp CEEEEECTTCHHHHHHHHHHHHHHHHTTH T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHCCH T ss_conf 58999979799999999999999997889 No 62 >>1itw_A Isocitrate dehydrogenase; greece KEY motif, oxidoreductase; HET: ICT; 1.95A {Azotobacter vinelandii} (A:1-164,A:400-420,A:464-741) Probab=28.11 E-value=28 Score=14.68 Aligned_cols=93 Identities=16% Similarity=0.182 Sum_probs=44.9 Q ss_pred CCCEEEEECCCCCHHHHHHHHHH-------CCCCEEEECCCCCCCCC--CCCCCCCCCCCCCCHHHHHHHHHH---HHHH Q ss_conf 35089870898768999999998-------59929998176656898--778785544678998999999999---9985 Q gi|254780558|r 196 ANITLAFASNGNSLDRWMKEAKK-------KGQEAILQIPMQAFDES--YNEDDSYTLKVTQTVQQLLNRLRY---SLRR 263 (396) Q Consensus 196 ~~vT~A~~P~~~~~~~~~~~Ar~-------~G~EvllhlPMEp~~~~--~~~pGp~~L~~~~~~~~~~~~l~~---~l~~ 263 (396) .|.-|=..++-.|-.+.+..-.. .|.++-+.-|-|+..|. ..-.|..++.++- --.++-|.. .|.- T Consensus 204 ~pavFWLD~~RaHD~~li~kV~~yL~~hdt~Gldi~Im~p~~A~~~sleri~~G~dtISVTG--NVLRDYLTDLFPILEL 281 (463) T 1itw_A 204 TPAVFWLDPARAHDAQVIAKVERYLKDYDTSGLDIRILSPVEATRFSLARIREGKDTISVTG--NVLRDYLTDLFPIMEL 281 (463) T ss_dssp CCEEEECCTTSHHHHHHHHHHHHHHTTSCCTTCCEEEECHHHHHHHHHHHHHTTCCCEEEEC--HHHHHHHHHHHHHHHH T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHCCCCEEEECC--CCHHHHHHHHHHHHCC T ss_conf 96599866553529999999999997459988853765899999999999865998487643--0078877645556325 Q ss_pred CCC-----CEEEEECCCCCCC-----CCHHHHHHHHHH Q ss_conf 589-----3598001230000-----498999999999 Q gi|254780558|r 264 GTG-----YFGVMNYRGAMLL-----SNKESAEVIFKE 291 (396) Q Consensus 264 ~p~-----~vGvnNhmGs~~t-----~~~~~m~~vl~~ 291 (396) -+- .|-++|. |+.|- +-+...++++++ T Consensus 282 GTSAKMLSIVPLm~G-GGlfETGAGGSAPKhVqQ~~eE 318 (463) T 1itw_A 282 GTSAKMLSIVPLMSG-GGLFETGAGGSAPKHVQQFLEE 318 (463) T ss_dssp SCSSSSEEEEEBTTS-CEEEESCSSCCCHHHHHHHHHH T ss_pred CHHHHHHHEEEECCC-CEEEECCCCCCCHHHHHHHHHC T ss_conf 316645441464368-7146249999705999999762 No 63 >>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} (A:48-79) Probab=28.10 E-value=13 Score=16.76 Aligned_cols=13 Identities=23% Similarity=0.621 Sum_probs=10.4 Q ss_pred HHCCCCEEEECCC Q ss_conf 8506928997497 Q gi|254780558|r 292 FAKRGLLFFDDGS 304 (396) Q Consensus 292 l~~rgL~flDs~T 304 (396) ||+||.|||++.- T Consensus 4 LKqrG~Ffve~~l 16 (32) T 1x62_A 4 LKQKGHFFVEDQI 16 (32) T ss_dssp HHHHCCEESSSCE T ss_pred CCCCCEEEECCEE T ss_conf 5999517689926 No 64 >>1lt8_A Betaine-homocysteine methyltransferase; homocysteine metabolism, homocysteinemia, zinc, thiol alkyl transfer; HET: CBH CIT; 2.05A {Homo sapiens} (A:) Probab=27.87 E-value=36 Score=14.03 Aligned_cols=158 Identities=9% Similarity=-0.071 Sum_probs=88.9 Q ss_pred EEEEECCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC Q ss_conf 89870898768999999998599299981766568987787855446789989999999999985589359800123000 Q gi|254780558|r 199 TLAFASNGNSLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLKVTQTVQQLLNRLRYSLRRGTGYFGVMNYRGAML 278 (396) Q Consensus 199 T~A~~P~~~~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~~~~~~~~~~~l~~~l~~~p~~vGvnNhmGs~~ 278 (396) -|=-+|.........+.+++.+..|++++-.+. +.++.+.+.++ .+......-+.++|+|=+. T Consensus 157 l~ET~~~l~E~~~a~~~~~~~~~Pv~is~t~~~----------~~~~~G~~~~~---~~~~~~~~~~~~iGiNC~~---- 219 (406) T 1lt8_A 157 IAEYFEHVEEAVWAVETLIASGKPVAATMAIGP----------EGDLHGVPPGE---AAVRLVKAGASIIGVNCHF---- 219 (406) T ss_dssp EECCCSCHHHHHHHHHHHGGGTSCEEEEECCBT----------TBCTTCCCHHH---HHHHHHTTTCSEEEEESSS---- T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECC----------CCCCCCCCHHH---HHHHHHHCCCCEEECCCCC---- T ss_conf 799986589999999998705996789978668----------88708988599---9999761275756000356---- Q ss_pred CCCHHHHHHHHHHHHC------CCCEEEECCCCCCCHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCC Q ss_conf 0498999999999850------6928997497632267898987099469845886289999999999999999998719 Q gi|254780558|r 279 LSNKESAEVIFKEFAK------RGLLFFDDGSSPRNLTRVLAPKLNLPYMVADLYLDDQVDRDKIREKLKGLEEIARTTG 352 (396) Q Consensus 279 t~~~~~m~~vl~~l~~------rgL~flDs~Ts~~Sva~~~A~~~gvp~~~~dvfLD~~~~~~~I~~qL~~l~~~Ar~~G 352 (396) .+..|..+++.|++ .++.++=.-......-.....-.+.|........ -..++++ |.+......+.| T Consensus 220 --gp~~~~~~l~~l~~~~~~~~~~~pl~v~PNaG~~~~~~~~~~~~~p~~~~~~~~-~~~~p~~----~a~~~~~~~~~G 292 (406) T 1lt8_A 220 --DPTISLKTVKLMKEGLEAAQLKAHLMSQPLAYHTPDANKQGFIDLPEFPFGLEP-RVATRWD----IQKYAREAYNLG 292 (406) T ss_dssp --CHHHHHHHHHHHHHHHHTTTCCCEEEEECCSBCCTTCCTTCGGGSTTTTTSCGG-GBCCHHH----HHHHHHHHHHHT T ss_pred --CHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCHHH----HHHHHHHHHHCC T ss_conf --889999999999987765245653330366234788776676789877677663-4258899----999999999809 Q ss_pred EEEEEE--ECCHHHHHHHHHHHHHHHHCCC Q ss_conf 489998--0887889999999756887691 Q gi|254780558|r 353 QAIGVA--VAFDESIEVISQWLQQEHVRDV 380 (396) Q Consensus 353 ~AI~ig--h~~p~Ti~~L~~w~~~l~~~gi 380 (396) .-|.=| ...|+-|.+|.+++.....+.. T Consensus 293 v~iiGGCCGTtPehI~ala~~l~~~~~~~~ 322 (406) T 1lt8_A 293 VRYIGGCCGFEPYHIRAIAEELAPERGFLP 322 (406) T ss_dssp EEEECCCTTCCHHHHHHHHHHTHHHHSCCC T ss_pred CCEECCCCCCCHHHHHHHHHHHCCCCCCCC T ss_conf 998575769999999999998610058999 No 65 >>1g5a_A Amylosucrase; glycosyltransferase, glycoside hydrolase, (beta-alpha)8 barrel; HET: EPE; 1.40A {Neisseria polysaccharea} (A:1-185,A:261-394,A:457-551) Probab=27.58 E-value=36 Score=14.00 Aligned_cols=19 Identities=16% Similarity=0.316 Sum_probs=9.4 Q ss_pred HHHHHHHHHHCCCCEEEEC Q ss_conf 8999999998599299981 Q gi|254780558|r 209 LDRWMKEAKKKGQEAILQI 227 (396) Q Consensus 209 ~~~~~~~Ar~~G~Evllhl 227 (396) .+++++.+|++|.+|||-+ T Consensus 165 ~~~lv~~~h~~gi~vi~D~ 183 (414) T 1g5a_A 165 LREVIAALHEAGISAVVDF 183 (414) T ss_dssp HHHHHHHHHHTTCEEEEEE T ss_pred HHHHHHHHHHCCCEEEEEE T ss_conf 9999999998869899998 No 66 >>2b0t_A NADP isocitrate dehydrogenase; monomeric, IDH, oxidoreductase; 1.75A {Corynebacterium glutamicum} (A:1-161,A:396-415,A:460-738) Probab=27.47 E-value=30 Score=14.57 Aligned_cols=94 Identities=17% Similarity=0.123 Sum_probs=46.2 Q ss_pred CCCCEEEEECCCCCHHHHHHHHHH-------CCCCEEEECCCCCCCCC--CCCCCCCCCCCCCCHHHHHHHHHH---HHH Q ss_conf 935089870898768999999998-------59929998176656898--778785544678998999999999---998 Q gi|254780558|r 195 PANITLAFASNGNSLDRWMKEAKK-------KGQEAILQIPMQAFDES--YNEDDSYTLKVTQTVQQLLNRLRY---SLR 262 (396) Q Consensus 195 P~~vT~A~~P~~~~~~~~~~~Ar~-------~G~EvllhlPMEp~~~~--~~~pGp~~L~~~~~~~~~~~~l~~---~l~ 262 (396) ..|.-|=..++-.|-...+..-.. .|.++-+.-|-|+..|. ..--|..++.++- --.++-|.. .|. T Consensus 199 g~pavFWLD~~RaHD~~li~kV~~yL~~hdt~gldi~Im~p~~A~~~slerir~G~dtISVTG--NVLRDYLTDLFPILE 276 (460) T 2b0t_A 199 GMPAVFWLDPERAHDRNLASLVEKYLADHDTEGLDIQILSPVEATQLSIDRIRRGEDTISVTG--NVLRDYNTDLFPILE 276 (460) T ss_dssp CCCEEEECCTTCHHHHHHHHHHHHHHTTSCCTTCCEEEECHHHHHHHHHHHHHTTCCCEEEEC--HHHHHHHHHHHHHHH T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCEEECCHHHHHHHHHHHHHCCCCEEEECC--HHHHHHHHHHHHHHC T ss_conf 997588756788882999999999997538998871311799999999998825998487661--046777754678751 Q ss_pred HCCC-----CEEEEECCCCCCC-----CCHHHHHHHHHH Q ss_conf 5589-----3598001230000-----498999999999 Q gi|254780558|r 263 RGTG-----YFGVMNYRGAMLL-----SNKESAEVIFKE 291 (396) Q Consensus 263 ~~p~-----~vGvnNhmGs~~t-----~~~~~m~~vl~~ 291 (396) --+- .|-++|. |+.|- +-+...++++++ T Consensus 277 lGTSAKMLSIVPLm~G-GGlfETGAGGSAPKhVqQ~~eE 314 (460) T 2b0t_A 277 LGTSAKMLSVVPLMAG-GGLFETGAGGSAPKHVQQVQEE 314 (460) T ss_dssp HSCSSSCEEEEEBTTS-CEEEECCSSCCCHHHHHHHHHH T ss_pred CCCHHHHHEEEEECCC-CCEEECCCCCCCHHHHHHHHHC T ss_conf 4420100115775257-7023369987635899999873 No 67 >>3ctp_A Periplasmic binding protein/LACI transcriptional regulator; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens qymf} (A:1-155,A:286-330) Probab=27.37 E-value=37 Score=13.97 Aligned_cols=51 Identities=16% Similarity=0.098 Sum_probs=19.1 Q ss_pred HHHHHHHHHHHHHHHHCCEEEEEEECC--HHHHHHHHHHHHHHHHCCCEEEEH Q ss_conf 999999999999998719489998088--788999999975688769189967 Q gi|254780558|r 335 DKIREKLKGLEEIARTTGQAIGVAVAF--DESIEVISQWLQQEHVRDVSVVPL 385 (396) Q Consensus 335 ~~I~~qL~~l~~~Ar~~G~AI~igh~~--p~Ti~~L~~w~~~l~~~gi~lVpv 385 (396) .....-+..+...++++|+-+.+.... +.....+.+++.+.+-.|+-+++. T Consensus 73 ~f~~~il~Gi~~~a~~~Gy~l~i~~~~~d~~~~~~~i~~l~~~~vdGIIi~~~ 125 (200) T 3ctp_A 73 PFFNQMASVIEEYAKNKGYTLFLCNTDDDKEKEKTYLEVLQSHRVAGIIASRS 125 (200) T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEETC T ss_pred CCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEECCCC T ss_conf 31012678999999977997999722332114688998765113311101234 No 68 >>2qo3_A Eryaii erythromycin polyketide synthase modules 3 and 4; ketosynthase, acyltransferase, phosphopantetheine; 2.59A {Saccharopolyspora erythraea} (A:661-729) Probab=27.21 E-value=37 Score=13.96 Aligned_cols=54 Identities=15% Similarity=0.143 Sum_probs=36.4 Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEEEC---CCCCCCCCHHHHHHHHHHHHCCCCEEEE Q ss_conf 467899899999999999855893598001---2300004989999999998506928997 Q gi|254780558|r 244 LKVTQTVQQLLNRLRYSLRRGTGYFGVMNY---RGAMLLSNKESAEVIFKEFAKRGLLFFD 301 (396) Q Consensus 244 L~~~~~~~~~~~~l~~~l~~~p~~vGvnNh---mGs~~t~~~~~m~~vl~~l~~rgL~flD 301 (396) +.++.+.+++++ .+.++++.+-+-|+ .-.-+..+...++.+.+.|+++|.++.- T Consensus 5 ~av~~~~~~~~~----~~~~~~~~v~iA~~Nsp~~~visG~~~~i~~~~~~l~~~g~~~~~ 61 (69) T 2qo3_A 5 AAVALGEAAVRE----RLRPWQDRLSVAAVNGPRSVVVSGEPGALRAFSEDCAAEGIRVRD 61 (69) T ss_dssp EEESSCHHHHHH----TTGGGTTCCCCCEEEETTEEEEEECHHHHHHHHHHHTTTTCCBCC T ss_pred HHHCCCHHHHHH----HHHHCCCCEEEEEECCCCCEEEECCHHHHHHHHHHHHHCCCEEEE T ss_conf 443399999999----986538919982756998489966789999999999867924998 No 69 >>1k77_A EC1530, hypothetical protein YGBM; TIM barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics; 1.63A {Escherichia coli} (A:1-246) Probab=27.14 E-value=37 Score=13.95 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=8.6 Q ss_pred CCCCHHHHHHHHHHHHCCCCEE Q ss_conf 0049899999999985069289 Q gi|254780558|r 278 LLSNKESAEVIFKEFAKRGLLF 299 (396) Q Consensus 278 ~t~~~~~m~~vl~~l~~rgL~f 299 (396) +..+...+..+++.+...++++ T Consensus 154 ~~~~~~~~~~l~~~~~~~~~~~ 175 (246) T 1k77_A 154 LFSSQYQALAIVEEVARDNVFI 175 (246) T ss_dssp SCCSHHHHHHHHHHHCCTTEEE T ss_pred CCCCHHHHHHHHHHHCCCCCEE T ss_conf 4578999999999748653023 No 70 >>2g7z_A Conserved hypothetical protein SPY1493; long-fatty acid binding protein, lipid binding protein, PSI, MCSG; HET: MSE HXA; 2.05A {Streptococcus pyogenes serotype M1} (A:158-282) Probab=27.02 E-value=37 Score=13.94 Aligned_cols=63 Identities=10% Similarity=-0.013 Sum_probs=49.1 Q ss_pred ECCC-CCHHHHHHHHHHHHHHHHHCCEEEEEEECC-HHHHHHHHHHHHHHHHCCCEEEEHHHHHH Q ss_conf 6289-999999999999999998719489998088-78899999997568876918996777430 Q gi|254780558|r 328 LDDQ-VDRDKIREKLKGLEEIARTTGQAIGVAVAF-DESIEVISQWLQQEHVRDVSVVPLSCLAK 390 (396) Q Consensus 328 LD~~-~~~~~I~~qL~~l~~~Ar~~G~AI~igh~~-p~Ti~~L~~w~~~l~~~gi~lVpvS~l~~ 390 (396) .+-. ....++.+-++.+++.+.....-|.|.|.. ++..+.+.+.+.+.....+.+.++|..+- T Consensus 46 ~~K~Rg~kka~~~l~~~~~~~~~~~~~~i~i~~~~~~e~~~~l~~~l~~~~~~~~~~~~~~~~i~ 110 (125) T 2g7z_A 46 LVKGRGNKTFTKWLDSYLAKNSHRPIAEIAISYAGEASLALTLKERIAAYYNHSISVLETGSIIQ 110 (125) T ss_dssp EEEESSTHHHHHHHHHHHHHHTTSCEEEEEEEEESCTHHHHHHHHHHTTTCCSCCEEEECCHHHH T ss_pred EEEEEEHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCEEE T ss_conf 77874348999999999998458997199999389999999999997615699879998233799 No 71 >>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria innocua CLIP11262, structural genomics, PSI-2, protein structure initiative; 2.31A {Listeria innocua} (A:1-43,A:271-363) Probab=26.65 E-value=38 Score=13.89 Aligned_cols=60 Identities=17% Similarity=0.112 Sum_probs=31.7 Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH Q ss_conf 935089870898768999999998599299981766568987787855446789989999999999985 Q gi|254780558|r 195 PANITLAFASNGNSLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLKVTQTVQQLLNRLRYSLRR 263 (396) Q Consensus 195 P~~vT~A~~P~~~~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~~~~~~~~~~~l~~~l~~ 263 (396) |..-+|-+++...+...+.+..+++|- ++ .|+..++ +++.+..+....+..+++...|.+ T Consensus 75 p~~g~fi~~~~~~d~~~~~~~L~e~GV--~V-~pGs~Fg------~~g~iRIs~~~~ee~~~~~eaL~~ 134 (136) T 3ffh_A 75 PANGNFVLIDLGIEAGTIFSYLEKNGY--IT-RSGAALG------FPTAVRITIGKEEDNSAVIALLEK 134 (136) T ss_dssp CCCSSEEEEECSSCHHHHHHHHHHTTE--EC-EETTTTT------CTTEEEEECCCHHHHHHHHHHHHH T ss_pred CCCCEEEEEECCCCHHHHHHHHHHCCE--EE-ECCCCCC------CCCEEEEEECCHHHHHHHHHHHHH T ss_conf 898528999689999999999980997--99-7688789------999899970899999999999998 No 72 >>1rbl_M Ribulose 1,5 bisphosphate carboxylase/oxygenase (small chain); lyase(carbon-carbon); HET: CAP; 2.20A {Synechococcus elongatus pcc 6301} (M:) Probab=25.69 E-value=39 Score=13.78 Aligned_cols=81 Identities=12% Similarity=0.103 Sum_probs=54.5 Q ss_pred EEEEECCCCC--HHHHHHHHHHCCCCEEEECCCCCCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHCCCC----EEEE Q ss_conf 8987089876--8999999998599299981766568987787-8554467899899999999999855893----5980 Q gi|254780558|r 199 TLAFASNGNS--LDRWMKEAKKKGQEAILQIPMQAFDESYNED-DSYTLKVTQTVQQLLNRLRYSLRRGTGY----FGVM 271 (396) Q Consensus 199 T~A~~P~~~~--~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~p-Gp~~L~~~~~~~~~~~~l~~~l~~~p~~----vGvn 271 (396) ||+|+|-..+ ..+.++-.-.+|.-+-+.-=-+..-.-..|. +-..+.-..++.++...|+..+...|+. +|+. T Consensus 13 t~SylP~Lt~~~I~~QI~~ll~qG~~i~iE~ad~r~~~~~~W~~w~lP~f~~~d~~~Vl~ele~c~~~~p~~YVRliG~D 92 (109) T 1rbl_M 13 TFSYLPPLSDRQIAAQIEYMIEQGFHPLIEFNEHSNPEEFYWTMWKLPLFACAAPQQVLDEVRECRSEYGDCYIRVAGFD 92 (109) T ss_dssp TTTTSSCCCHHHHHHHHHHHHHHTCEEEEEEESCCCTTCCCCEECSSCCTTCCCHHHHHHHHHHHHHHCTTSEEEEEEEE T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEE T ss_conf 22268999999999999999847880148870068734315023256852367678999999999997997669899996 Q ss_pred ECCCCCCC Q ss_conf 01230000 Q gi|254780558|r 272 NYRGAMLL 279 (396) Q Consensus 272 NhmGs~~t 279 (396) |+-+++.. T Consensus 93 ~~~q~r~~ 100 (109) T 1rbl_M 93 NIKECQTS 100 (109) T ss_dssp TTTTEEEE T ss_pred CCCCEEEE T ss_conf 88777999 No 73 >>3ke3_A Putative serine-pyruvate aminotransferase; structural genomics, joint center for structural genomics, JCSG; HET: LLP; 2.20A {Psychrobacter arcticus 273-4} (A:1-271) Probab=25.60 E-value=40 Score=13.77 Aligned_cols=150 Identities=9% Similarity=-0.008 Sum_probs=78.8 Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 86589997377877168899998379350898708987689999999985992999817665689877878554467899 Q gi|254780558|r 170 GARIAIVVSGLGISQTGTQRAINLLPANITLAFASNGNSLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLKVTQT 249 (396) Q Consensus 170 ~~riAIVIddlG~~~~~~~~ai~~LP~~vT~A~~P~~~~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~~~~ 249 (396) +..=++++-.-|.............+..+-+.-..+......++..+...|.++.. +|......- .+....+ T Consensus 49 g~~~~~~~~~g~t~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~-------~~~~~~~ 120 (271) T 3ke3_A 49 NAEAAVIIPGSGTYGXEAVARQLTIDEDCLIIRNGWFSYRWTQILEKGKFAKSSTV-LTAERTEDT-------EAPKPFA 120 (271) T ss_dssp TCSEEEEEESCHHHHHHHHHHHHCTTCEEEEEECSHHHHHHHHHHHHHCCSSEEEE-EECEESSCC-------SSCCCEE T ss_pred CCCCEEEEECCHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEE-EECCCCCCC-------CCCCCCC T ss_conf 89977999687799999999971889857996677188999999997188861699-702443224-------5567788 Q ss_pred HHHHHHHHHHHHHHCCCCEE---EEECCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCHHH------------HHH Q ss_conf 89999999999985589359---800123000049899999999985069289974976322678------------989 Q gi|254780558|r 250 VQQLLNRLRYSLRRGTGYFG---VMNYRGAMLLSNKESAEVIFKEFAKRGLLFFDDGSSPRNLTR------------VLA 314 (396) Q Consensus 250 ~~~~~~~l~~~l~~~p~~vG---vnNhmGs~~t~~~~~m~~vl~~l~~rgL~flDs~Ts~~Sva~------------~~A 314 (396) ...+.+.+......-+..+- ++|..|. +....-++.+.+.++++|.+++.|.+...-+.. ... T Consensus 121 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~G~--~~~~~di~~i~~~~~~~g~~~~vD~a~~~g~~~~~~~~~~D~~~~s~~ 198 (271) T 3ke3_A 121 PVDIETAVAKIKEDKSAIVYAPHVETSSGI--ILSEEYIKALSEAVHSVGGLLVIDCIASGCVWLDXKELGIDVLISAPQ 198 (271) T ss_dssp CCCHHHHHHHHHHHTCSEEEEESEETTTTE--ECCHHHHHHHHHHHHHTTCEEEEECTTCTTCCCCHHHHTCSEEEECTT T ss_pred HHHHHHHHHHHHCCCCEEEEEECCCCCCCC--CCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHCCCEEEEEECC T ss_conf 553899998623258608998321025540--012444321001124556347873114553332310048649998267 Q ss_pred HHHCCCEEEEEEEEC Q ss_conf 870994698458862 Q gi|254780558|r 315 PKLNLPYMVADLYLD 329 (396) Q Consensus 315 ~~~gvp~~~~dvfLD 329 (396) +.++-|....-++.+ T Consensus 199 K~l~~~~g~g~~~~~ 213 (271) T 3ke3_A 199 XGWSSTPCAGLVXLS 213 (271) T ss_dssp TTTCSCCCEEEEEEC T ss_pred CCCCCCCCEEEECCC T ss_conf 864389985010044 No 74 >>3dg3_A Muconate cycloisomerase; muconate lactonizing enzyme, muconolactone binding; 1.60A {Mycobacterium smegmatis str} PDB: 3dg6_A* 3dg7_A* (A:121-350) Probab=24.99 E-value=41 Score=13.70 Aligned_cols=144 Identities=13% Similarity=0.119 Sum_probs=90.2 Q ss_pred CCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCC-CCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHH Q ss_conf 76899999999859929998176656898778785544678-99899999999999855893598001230000498999 Q gi|254780558|r 207 NSLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLKVT-QTVQQLLNRLRYSLRRGTGYFGVMNYRGAMLLSNKESA 285 (396) Q Consensus 207 ~~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~~-~~~~~~~~~l~~~l~~~p~~vGvnNhmGs~~t~~~~~m 285 (396) ......++..+++|+..+ -+.++ .+.++...+++.....++.-+-+.---..+++. ..- T Consensus 22 e~~~~~~~~~~~~Gf~~~------------------Kikvg~~~~~~d~~~i~air~~~g~~~~l~~Dan~~~~~--~~A 81 (230) T 3dg3_A 22 KMVAEAERIRETYGINTF------------------KVKVGRRPVQLDTAVVRALRERFGDAIELYVDGNRGWSA--AES 81 (230) T ss_dssp HHHHHHHHHHHHHCCCEE------------------EEECCCSSTHHHHHHHHHHHHHHGGGSEEEEECTTCSCH--HHH T ss_pred HHHHHHHHHHHHHHHHHC------------------CCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCC--CHH T ss_conf 356666666542101010------------------122324453003444323565527630364214334451--011 Q ss_pred HHHHHHHHCCCCEEEECCCCCCCHH--HHHHHHHCCCEEEEEEEECCCCCHHHH--------------------HHHHHH Q ss_conf 9999998506928997497632267--898987099469845886289999999--------------------999999 Q gi|254780558|r 286 EVIFKEFAKRGLLFFDDGSSPRNLT--RVLAPKLNLPYMVADLYLDDQVDRDKI--------------------REKLKG 343 (396) Q Consensus 286 ~~vl~~l~~rgL~flDs~Ts~~Sva--~~~A~~~gvp~~~~dvfLD~~~~~~~I--------------------~~qL~~ 343 (396) ..+++.|.+.++.|+-.--...... ..++...++|.+.-.-+ .+.... .....+ T Consensus 82 ~~~~~~l~~~~i~~~EeP~~~~d~~~~~~l~~~~~~pia~~E~~----~~~~~~~~~~~~~a~~vi~~~~~~gGl~~~~~ 157 (230) T 3dg3_A 82 LRAMREMADLDLLFAEELCPADDVLSRRRLVGQLDMPFIADESV----PTPADVTREVLGGSATAISIKTARTGFTGSTR 157 (230) T ss_dssp HHHHHHTTTSCCSCEESCSCTTSHHHHHHHHHHCSSCEEECTTC----SSHHHHHHHHHHTSCSEEEECHHHHTTHHHHH T ss_pred HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC----CCCHHHHHHCCCCCCCEECCCCCCCCCHHHHH T ss_conf 46787630011013688864000225777765202333422334----31023444203443331326644765079999 Q ss_pred HHHHHHHCCEEEEEEECCH--HHHHHHHHHHHH Q ss_conf 9999987194899980887--889999999756 Q gi|254780558|r 344 LEEIARTTGQAIGVAVAFD--ESIEVISQWLQQ 374 (396) Q Consensus 344 l~~~Ar~~G~AI~igh~~p--~Ti~~L~~w~~~ 374 (396) +..+|+++|.-+.++.... ..+.+....... T Consensus 158 ~~~~a~~~gi~~~~h~~~~~~i~~aa~~hlaa~ 190 (230) T 3dg3_A 158 VHHLAEGLGLDMVMGNQIDGQIGTACTVSFGTA 190 (230) T ss_dssp HHHHHHHHTCEEEECCSSCCHHHHHHHHHHHTT T ss_pred HHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHH T ss_conf 766888629955106876858999999999986 No 75 >>2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} (B:334-428) Probab=23.59 E-value=43 Score=13.53 Aligned_cols=55 Identities=9% Similarity=-0.071 Sum_probs=43.0 Q ss_pred CCCCCHHHHHHHHHHHHHHCCC----CEEEEECCCC-CCCCCHHHHHHHHHHHHCCCCEE Q ss_conf 6789989999999999985589----3598001230-00049899999999985069289 Q gi|254780558|r 245 KVTQTVQQLLNRLRYSLRRGTG----YFGVMNYRGA-MLLSNKESAEVIFKEFAKRGLLF 299 (396) Q Consensus 245 ~~~~~~~~~~~~l~~~l~~~p~----~vGvnNhmGs-~~t~~~~~m~~vl~~l~~rgL~f 299 (396) -.+++.++++..+.......+. ++...|.-.+ -+......++.+.+.|+++|.+- T Consensus 8 V~g~~~~~i~~~i~~~~~~~~~~~~v~IA~~Nsp~q~VisG~~~~l~~~~~~l~~~~~~~ 67 (95) T 2pff_B 8 ISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPS 67 (95) T ss_dssp CCSSCTTHHHHHHHHHHHHSCTTTCCBCCCCCSSSCCEEBCSHHHHHHHHHHHHTTSCCS T ss_pred ECCCCHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCEEEECCHHHHHHHHHHHHHCCCCC T ss_conf 789999999999999847498113799998857984799599899999999986047999 No 76 >>1pq4_A Periplasmic binding protein component of AN ABC type zinc uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} (A:189-270) Probab=23.45 E-value=43 Score=13.52 Aligned_cols=46 Identities=9% Similarity=0.142 Sum_probs=33.2 Q ss_pred CCCCHHHHHHHHHHHHCCCC--EEEECCCCCCCHHHHHHHHHCCCEEEE Q ss_conf 00498999999999850692--899749763226789898709946984 Q gi|254780558|r 278 LLSNKESAEVIFKEFAKRGL--LFFDDGSSPRNLTRVLAPKLNLPYMVA 324 (396) Q Consensus 278 ~t~~~~~m~~vl~~l~~rgL--~flDs~Ts~~Sva~~~A~~~gvp~~~~ 324 (396) -......|..+.+.+++.|. .|.++..++++ +..++++.|++...- T Consensus 31 ~eps~~~i~~l~~~ik~~~i~~if~e~~~~~k~-~~~ia~etg~~~~~l 78 (82) T 1pq4_A 31 QEPSAQELKQLIDTAKENNLTMVFGETQFSTKS-SEAIAAEIGAGVELL 78 (82) T ss_dssp BCCCHHHHHHHHHHHHTTTCCEEEEETTSCCHH-HHHHHHHHTCEEEEE T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHH-HHHHHHHHCCCEEEE T ss_conf 899989999999999974998899728999199-999999809987987 No 77 >>1uj6_A Ribose 5-phosphate isomerase; enzyme-inhibitor complex, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: A5P; 1.74A {Thermus thermophilus} (A:1-130,A:211-227) Probab=23.36 E-value=20 Score=15.58 Aligned_cols=53 Identities=15% Similarity=0.107 Sum_probs=38.6 Q ss_pred HHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCEEEEEEEECCCCCHH Q ss_conf 99999999985069289974976322678989870994698458862899999 Q gi|254780558|r 283 ESAEVIFKEFAKRGLLFFDDGSSPRNLTRVLAPKLNLPYMVADLYLDDQVDRD 335 (396) Q Consensus 283 ~~m~~vl~~l~~rgL~flDs~Ts~~Sva~~~A~~~gvp~~~~dvfLD~~~~~~ 335 (396) ..-+...+.++.....|+|++||..-++..++....+-...+.+.|-+..... T Consensus 11 ~IA~~A~~lI~~gd~Ifld~GST~~~la~~L~~~~~~~v~tn~~~igG~~~~~ 63 (147) T 1uj6_A 11 EAAHAAIAYVQDGXVVGLGTGSTARYAVLELARRLREGELKGVVGVPTSRATE 63 (147) T ss_dssp HHHHHHHTTCCTTCEEEECCSHHHHHHHHHHHHHHHTTSSCSCEEEESSHHHH T ss_pred HHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHH T ss_conf 99999997579999999783188999999999876536556428960758899 No 78 >>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognition domain, dimer, ligase; 1.18A {Homo sapiens} (A:226-326) Probab=22.98 E-value=20 Score=15.63 Aligned_cols=60 Identities=10% Similarity=-0.014 Sum_probs=43.9 Q ss_pred CCCCCCCCHHHHHHHHHHHHHH-------------------CCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEE Q ss_conf 5446789989999999999985-------------------58935980012300004989999999998506928997 Q gi|254780558|r 242 YTLKVTQTVQQLLNRLRYSLRR-------------------GTGYFGVMNYRGAMLLSNKESAEVIFKEFAKRGLLFFD 301 (396) Q Consensus 242 ~~L~~~~~~~~~~~~l~~~l~~-------------------~p~~vGvnNhmGs~~t~~~~~m~~vl~~l~~rgL~flD 301 (396) .+|....+++++++.+..+... ..+..||.|...-.+--+...++.+.+....-++.+.| T Consensus 5 s~I~l~D~~~~I~kKI~kA~td~~~~~~n~~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~ 83 (101) T 1n3l_A 5 SKIDLLDRKEDVKKKLKKAFCEPGNVENNGVLSFIKHVLFPLKSEFVILRDEKWGGNKTYTAYVDLEKDFAAEVVHPGD 83 (101) T ss_dssp CSCBTTCCHHHHHHHHHTCCCCTTCCSSCHHHHHHHHTTGGGTTCEEECCCGGGTCCEEESSHHHHHHHHHTTCSCHHH T ss_pred CEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEECCHHHCCCCCCHHHHCCCCCCCCHHHHHHHHHCCCCCHHH T ss_conf 3214259999999999963089888787854322110002353213424566645777767799999999559988899 No 79 >>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-amino-7-ketopelargonate synthase; 1.65A {Escherichia coli} (A:23-76,A:264-384) Probab=22.83 E-value=45 Score=13.44 Aligned_cols=110 Identities=10% Similarity=0.034 Sum_probs=53.7 Q ss_pred EEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCEEEEEEEECCC---CCHHHHHHHHHHHH Q ss_conf 980012300004989999999998506928997497632267898987099469845886289---99999999999999 Q gi|254780558|r 269 GVMNYRGAMLLSNKESAEVIFKEFAKRGLLFFDDGSSPRNLTRVLAPKLNLPYMVADLYLDDQ---VDRDKIREKLKGLE 345 (396) Q Consensus 269 GvnNhmGs~~t~~~~~m~~vl~~l~~rgL~flDs~Ts~~Sva~~~A~~~gvp~~~~dvfLD~~---~~~~~I~~qL~~l~ 345 (396) +-|||+| |..|++..+...+.+.+.|...=-|.|+.-+.....|-...+- +|..+ .....+.+.++.+. T Consensus 23 ~sn~yLg--l~~~~~~~~a~~~a~~~~G~g~~~sfT~s~~P~~~aaa~aal~------~l~~~~l~~~~~~l~~~~~~~~ 94 (175) T 1bs0_A 23 SSNDYLG--LSHHPQIIRAWQQGAEQFGIGSGGSYSTSMPPAQAQALRASLA------VIRSDEGDARREKLAALITRFR 94 (175) T ss_dssp SCCCTTS--GGGCHHHHHHHHHHHHHHCSCCCSBSSBCCCHHHHHHHHHHHH------HHHSHHHHHHHHHHHHHHHHHH T ss_pred ECCCCCC--CCCCHHHHHHHHHHHHHHCCCCCCCHCCCCCCCHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH T ss_conf 7753125--6799899999999999838987655424445522678999999------9986026788888888899887 Q ss_pred HHHHHCCEEEEEEE--CCH---HHHHHHHHHHHHHHHCCCEEEEHH Q ss_conf 99987194899980--887---889999999756887691899677 Q gi|254780558|r 346 EIARTTGQAIGVAV--AFD---ESIEVISQWLQQEHVRDVSVVPLS 386 (396) Q Consensus 346 ~~Ar~~G~AI~igh--~~p---~Ti~~L~~w~~~l~~~gi~lVpvS 386 (396) +.-++.|..+.-+. ..+ ..-+.-..+...+.++||.+.+.. T Consensus 95 ~~L~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~~gi~v~~~~ 140 (175) T 1bs0_A 95 AGVQDLPFTLADSCSAIQPLIVGDNSRALQLAEKLRQQGCWVTAIR 140 (175) T ss_dssp HHHTTSSCEECSCCSSBCCEEEESHHHHHHHHHHHHHTTEECCEEC T ss_pred HHHHHCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCEEEEEEC T ss_conf 6676249764799988799997999999999999998890399972 No 80 >>3k89_A Malonyl COA-ACP transacylase; bacterial blight, XOO0880, FABD, xanthomonas oryzae PV. oryzae KACC10331; 1.60A {Xanthomonas oryzae PV} PDB: 3een_A (A:130-202) Probab=22.32 E-value=46 Score=13.38 Aligned_cols=59 Identities=10% Similarity=0.022 Sum_probs=41.7 Q ss_pred CCCCCC--CCCHHHHHHHHHHHHHHCCCCEEEEECCC-CCCCCCHHHHHHHHHHHHCCCCEE Q ss_conf 554467--89989999999999985589359800123-000049899999999985069289 Q gi|254780558|r 241 SYTLKV--TQTVQQLLNRLRYSLRRGTGYFGVMNYRG-AMLLSNKESAEVIFKEFAKRGLLF 299 (396) Q Consensus 241 p~~L~~--~~~~~~~~~~l~~~l~~~p~~vGvnNhmG-s~~t~~~~~m~~vl~~l~~rgL~f 299 (396) .++++. +++.++++..+...-..-.-++.--|.-. .-+..+...++.+.+.|+++|.-| T Consensus 2 ~G~M~aV~~l~~~~v~~~~~~~~~~~~i~IA~~Nsp~~~visG~~~~i~~~~~~l~~~g~~~ 63 (73) T 3k89_A 2 VGAMAAVLGAEDAVVLEVCAEAAGSQVVVPANFNSPGQIVIGGDAAAVDRALALLAERGVRK 63 (73) T ss_dssp SEEEEEEESCCHHHHHHHHHHHCTTSCEEEEEEEETTEEEEEEEHHHHHHHHHHHHHTTCCC T ss_pred CEEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCEEECCCHHHHHHHHHHHHHCCCCE T ss_conf 82178885312778999997420033440125779977331473778999999999579964 No 81 >>3e0f_A Putative metal-dependent phosphoesterase; YP_910028.1, structural genomics, joint center for structural genomics, JCSG; 2.40A {Bifidobacterium adolescentis ATCC15703} (A:1-95,A:177-301) Probab=22.20 E-value=25 Score=14.98 Aligned_cols=21 Identities=14% Similarity=0.039 Sum_probs=9.9 Q ss_pred HHHHHHHHHHCCEEEEEEECC Q ss_conf 999999998719489998088 Q gi|254780558|r 341 LKGLEEIARTTGQAIGVAVAF 361 (396) Q Consensus 341 L~~l~~~Ar~~G~AI~igh~~ 361 (396) +.++.+..++.|..+.++||. T Consensus 104 ~~e~i~~i~~~G~~~vlAHP~ 124 (220) T 3e0f_A 104 THEVIAAVKGAGGVVVAAHAG 124 (220) T ss_dssp HHHHHHHHHHTTCEEEEESTT T ss_pred HHHHHHHHHHCCCCCCCCCCC T ss_conf 899888988637741001100 No 82 >>2p6p_A Glycosyl transferase; GT-B family, X-RAY-diffraction,urdamycina- biosynthesis; 1.88A {Streptomyces fradiae} (A:1-200,A:368-384) Probab=21.85 E-value=42 Score=13.58 Aligned_cols=42 Identities=17% Similarity=0.048 Sum_probs=28.6 Q ss_pred HHHHHHHHHHHHC--CCCEEEECCCCCCCHHHHHHHHHCCCEEEEEE Q ss_conf 8999999999850--69289974976322678989870994698458 Q gi|254780558|r 282 KESAEVIFKEFAK--RGLLFFDDGSSPRNLTRVLAPKLNLPYMVADL 326 (396) Q Consensus 282 ~~~m~~vl~~l~~--rgL~flDs~Ts~~Sva~~~A~~~gvp~~~~dv 326 (396) ...++.+++.++. -.+.+.|..+.. +..+|+++|+|+..-.. T Consensus 93 ~~~~~~l~~~l~~~~~D~vi~D~~~~~---~~~vA~~l~IP~v~~~~ 136 (217) T 2p6p_A 93 ASSLPRMLDFSRAWRPDLIVGGTMSYV---APLLALHLGVPHARQTW 136 (217) T ss_dssp HHHHHHHHHHHHHHCCSEEEEETTCTH---HHHHHHHHTCCEEEECC T ss_pred HHHHHHHHHHHHHHCCCEEECCCCCHH---HHHHHHHHHCCCCEEEC T ss_conf 999999999987506553303444417---88999985143100102 No 83 >>3ezo_A Malonyl COA-acyl carrier protein transacylase; ssgcid, acyl-carrier-protein S-malonyltransferase, acyltransferase, transferase; 2.05A {Burkholderia pseudomallei 1710B} (A:133-206) Probab=21.44 E-value=48 Score=13.26 Aligned_cols=60 Identities=7% Similarity=-0.102 Sum_probs=42.2 Q ss_pred CCCCCCC--CCCHHHHHHHHHHHHHHCCCCE-EEEECCCCCCCCCHHHHHHHHHHHHCCCCEE Q ss_conf 8554467--8998999999999998558935-9800123000049899999999985069289 Q gi|254780558|r 240 DSYTLKV--TQTVQQLLNRLRYSLRRGTGYF-GVMNYRGAMLLSNKESAEVIFKEFAKRGLLF 299 (396) Q Consensus 240 Gp~~L~~--~~~~~~~~~~l~~~l~~~p~~v-GvnNhmGs~~t~~~~~m~~vl~~l~~rgL~f 299 (396) |.+.++. +++.++++..+...-..-.-++ -+|.....-+..+...++.+.+.|+++|.-| T Consensus 2 g~G~M~aV~~~~~~~i~~~~~~~~~~~~v~IA~~Nsp~~~VisG~~~~i~~~~~~l~~~g~~~ 64 (74) T 3ezo_A 2 GVGGMAAILGLDDDTVRAVCAEASATGVVEAVNFNAPAQVVIAGTKAGIEKACEIAKEKGAKR 64 (74) T ss_dssp TSEEEEEEESCCHHHHHHHHHHHGGGSCEEEEEEEETTEEEEEEEHHHHHHHHHHHHHTTCSE T ss_pred CCCEEEEEECCHHHHHHHHHCCCCCCCCEEEEEECCCCCEEECCCHHHHHHHHHHHHHCCCCE T ss_conf 995189984453543445411333256302648867751784187999999999998479967 No 84 >>1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} (A:1-240) Probab=21.38 E-value=48 Score=13.26 Aligned_cols=82 Identities=10% Similarity=0.080 Sum_probs=61.7 Q ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHH Q ss_conf 89999999985992999817665689877878554467899899999999999855893598001230000498999999 Q gi|254780558|r 209 LDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLKVTQTVQQLLNRLRYSLRRGTGYFGVMNYRGAMLLSNKESAEVI 288 (396) Q Consensus 209 ~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~~~~~~~~~~~l~~~l~~~p~~vGvnNhmGs~~t~~~~~m~~v 288 (396) ..++.+..+..|..++.-. .+ ......+...-..+++++||.|..+..+...+..+ T Consensus 146 ~~~~~~~~~~~g~~~~~~~--------------------~~----~~~a~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~l 201 (240) T 1pii_A 146 YRQLAAVAHSLEMGVLTEV--------------------SN----EEEQERAIALGAKVVGINNRDLRDLSIDLNRTREL 201 (240) T ss_dssp HHHHHHHHHHTTCEEEEEE--------------------CS----HHHHHHHHHTTCSEEEEESEETTTTEECTHHHHHH T ss_pred HHHHHHHHHHHCCCEEEEE--------------------CC----HHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHH T ss_conf 9999999998599259997--------------------89----99999998389998999799863150887999998 Q ss_pred HHHHHCCCCEEEECCCCCCCHHHHHH Q ss_conf 99985069289974976322678989 Q gi|254780558|r 289 FKEFAKRGLLFFDDGSSPRNLTRVLA 314 (396) Q Consensus 289 l~~l~~rgL~flDs~Ts~~Sva~~~A 314 (396) .+.++.+--.+.|.+=+...-+..++ T Consensus 202 ~~~~~~~ipVia~GGI~~~~dvkal~ 227 (240) T 1pii_A 202 APKLGHNVTVISESGINTYAQVRELS 227 (240) T ss_dssp HHHHCTTSEEEEESCCCCHHHHHHHT T ss_pred HHHCCCCCEEEECCCCCCHHHHHHHH T ss_conf 60078787799836999999999998 No 85 >>1cyg_A Cyclodextrin glucanotransferase; glycosyltransferase; 2.50A {Geobacillus stearothermophilus} (A:1-134,A:199-399) Probab=21.31 E-value=48 Score=13.25 Aligned_cols=37 Identities=11% Similarity=0.013 Sum_probs=17.5 Q ss_pred EEEEECCCCCCCC----CHHHHHHHHHHHHCCCCEEEECCC Q ss_conf 5980012300004----989999999998506928997497 Q gi|254780558|r 268 FGVMNYRGAMLLS----NKESAEVIFKEFAKRGLLFFDDGS 304 (396) Q Consensus 268 vGvnNhmGs~~t~----~~~~m~~vl~~l~~rgL~flDs~T 304 (396) .-+.||-.+|+-+ ........+-.+--.|.-+|=.++ T Consensus 254 ~f~~NHD~~R~~s~~~~~~~~~~a~~~llt~pGiP~iyyG~ 294 (335) T 1cyg_A 254 TFIDNHDMDRFMIDGGDPRKVDMALAVLLTSRGVPNIYYGT 294 (335) T ss_dssp ECSCCTTSCCSCCTTCCTHHHHHHHHHHHHSSSEEEEETTG T ss_pred EECCCCCCHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEECH T ss_conf 53357873323113799999999999998717986997561 No 86 >>2oho_A Glutamate racemase; isomerase; 2.25A {Streptococcus pyogenes m1 gas} PDB: 2ohg_A 2ohv_A* (A:1-105,A:237-273) Probab=21.31 E-value=48 Score=13.25 Aligned_cols=67 Identities=18% Similarity=0.069 Sum_probs=42.8 Q ss_pred HCCCCEEEECCCCCCCHHHHHHHHHCC-CE---EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCE-EEEEEE Q ss_conf 506928997497632267898987099-46---98458862899999999999999999987194-899980 Q gi|254780558|r 293 AKRGLLFFDDGSSPRNLTRVLAPKLNL-PY---MVADLYLDDQVDRDKIREKLKGLEEIARTTGQ-AIGVAV 359 (396) Q Consensus 293 ~~rgL~flDs~Ts~~Sva~~~A~~~gv-p~---~~~dvfLD~~~~~~~I~~qL~~l~~~Ar~~G~-AI~igh 359 (396) .++-++.+|||-.+-|+...+.+...= .+ +-+..|-....+.+.|...+.+..+...++|. +|.|.- T Consensus 11 ~~~~IGIfDSGiGgLavl~~i~~~~p~~~~iyv~D~~~~PYG~ks~e~i~~~~~~~~~~L~~~g~~~IVIAC 82 (142) T 2oho_A 11 DTRPIGFLDSGVGGLTVVCELIRQLPHEKIVYIGDSARAPYGPRPKKQIKEYTWELVNFLLTQNVKMIVFAC 82 (142) T ss_dssp CCCCEEEEESSSTTHHHHHHHHHHCTTCCEEEEECGGGCCCTTSCHHHHHHHHHHHHHHHHTTTCSEEEECC T ss_pred CCCCEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEC T ss_conf 999789997897779999999997899999999468899989999999999999999999855787599961 No 87 >>3faw_A Reticulocyte binding protein; TIM barrel, beta barrel, hydrolase, cell WALL, peptidoglycan-anchor, secreted; 2.10A {Streptococcus agalactiae COH1} PDB: 3fax_A* (A:256-392,A:430-632) Probab=20.91 E-value=49 Score=13.20 Aligned_cols=40 Identities=18% Similarity=0.390 Sum_probs=23.6 Q ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH Q ss_conf 8999999998599299981766568987787855446789989999999999985 Q gi|254780558|r 209 LDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLKVTQTVQQLLNRLRYSLRR 263 (396) Q Consensus 209 ~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~~~~~~~~~~~l~~~l~~ 263 (396) .++.++.+|+.|-.||+-+-++ ...-.+++.+.+++++++ T Consensus 117 ~~~lv~~~h~~Gi~vi~D~V~~---------------np~V~~~i~~~~~~Wl~~ 156 (340) T 3faw_A 117 LKQLIHDIHKRGMGVILDVVYT---------------HAMSRRVLVDSIKYLTSE 156 (340) T ss_dssp HHHHHHHHHHTTCEEEEEECTT---------------SHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHCCCCCEEEEEEEEC---------------CHHHHHHHHHHHHHHHHH T ss_conf 9998876412577468734435---------------346667776555544322 No 88 >>2nva_A Arginine decarboxylase, A207R protein; PLP, TIM barrel, eukaryotic ODC- like, lyase; HET: PL2; 1.80A {Paramecium bursaria chlorella virus 1} PDB: 2nv9_A* (A:25-257) Probab=20.58 E-value=50 Score=13.15 Aligned_cols=125 Identities=12% Similarity=0.020 Sum_probs=75.0 Q ss_pred EEEEECCCCCCCHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHH Q ss_conf 89997377877168899998379350898708987689999999985992999817665689877878554467899899 Q gi|254780558|r 173 IAIVVSGLGISQTGTQRAINLLPANITLAFASNGNSLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLKVTQTVQQ 252 (396) Q Consensus 173 iAIVIddlG~~~~~~~~ai~~LP~~vT~A~~P~~~~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~~~~~~~ 252 (396) -.||+.+.+.+...-..++. . .+..-+.=.-...+.+.+.+...+.-+-+++.+.... +...-.-+.+.++ T Consensus 61 ~~ii~~~~~~~~~~l~~a~~-~--g~~~~~ids~~~l~~l~~~~~~~~~~~ri~~~~~~~~------~~~~~~~~~~~~~ 131 (233) T 2nva_A 61 SRIIFAHTMKTIDDLIFAKD-Q--GVDIATFDSSFELDKIHTYHPNCKMILRIRCDDPNAT------VQLGNKFGANEDE 131 (233) T ss_dssp GGEEECCSCCCHHHHHHHHH-H--TCCEEEECSHHHHHHHHHHCTTCEEEEEBCCCCTTCS------BCCTTTSSBCGGG T ss_pred HHEEECCCCCCHHHHHHHHH-H--HCCCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCC------CCCCCCCCCCHHH T ss_conf 99474567667899999997-4--0133012246778777541333233113303455455------5666556874356 Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCCCHH------HHHHHHHHHHCC--CCEEEECCCCC Q ss_conf 9999999998558935980012300004989------999999998506--92899749763 Q gi|254780558|r 253 LLNRLRYSLRRGTGYFGVMNYRGAMLLSNKE------SAEVIFKEFAKR--GLLFFDDGSSP 306 (396) Q Consensus 253 ~~~~l~~~l~~~p~~vGvnNhmGs~~t~~~~------~m~~vl~~l~~r--gL~flDs~Ts~ 306 (396) +...++..-..--..+|+.-|.||.....+. .+..++..+++. .+-++|-+-+. T Consensus 132 ~~~~~~~~~~~~~~l~Gih~H~~s~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ggg~ 193 (233) T 2nva_A 132 IRHLLEYAKQLDIEVIGISFHVGSGSRNPEAYYRAIKSSKEAFNEAISVGHKPYILDIGGGL 193 (233) T ss_dssp HHHHHHHHHHTTCCEEEEECCCCBSBCCHHHHHHHHHHHHHHHHHHHHHTCCCCEEECCSCB T ss_pred HHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCC T ss_conf 79999988755963678753546555444889999988888886654413455421224765 No 89 >>3g87_A Malonyl COA-acyl carrier protein transacylase; ssgcid, niaid, decode biostructures, dried seaweed, acyltransferase, transferase; 2.30A {Burkholderia pseudomallei 1710B} (A:125-195) Probab=20.41 E-value=50 Score=13.13 Aligned_cols=54 Identities=7% Similarity=-0.039 Sum_probs=35.8 Q ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEECCCC-CCCCCHHHHHHHHHHHHCCCCEEEE Q ss_conf 899899999999999855893598001230-0004989999999998506928997 Q gi|254780558|r 247 TQTVQQLLNRLRYSLRRGTGYFGVMNYRGA-MLLSNKESAEVIFKEFAKRGLLFFD 301 (396) Q Consensus 247 ~~~~~~~~~~l~~~l~~~p~~vGvnNhmGs-~~t~~~~~m~~vl~~l~~rgL~flD 301 (396) +++.++++..+...- .-.-++...|+-.+ -+..+...++.+.+.|+++|.++.- T Consensus 10 ~~~~~~v~~~~~~~~-~~~v~IA~~Nsp~~~VIsG~~~ai~~~~~~l~~~gi~~~~ 64 (71) T 3g87_A 10 NASREQIERTLDEHG-LVDTAIANDNTPSQLVISGPAHEIARAEALFQHDRVRYLR 64 (71) T ss_dssp SCCHHHHHHHHHHTT-CTTCEEEEEEETTEEEEEEEHHHHHHHGGGSCSSSCEEEE T ss_pred CCHHHHHHHHHHCCC-CCEEEEEEECCHHHHHCCCCHHHHHHHHHHHHHCCEEEEE T ss_conf 010566678763256-7608999816656632243113467888756533847875 Done!