HHsearch results for GI: 254780558 and protein with PDBid: 1ny1_A
>1ny1_A Probable polysaccharide deacetylase PDAA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.6.2.3 PDB: 1w17_A 1w1b_1 1w1a_1
Probab=98.18 E-value=2.7e-05 Score=51.70 Aligned_cols=179 Identities=11% Similarity=0.036 Sum_probs=112.2
Q ss_pred CEEEEEECCCCCCCHHH---HHHHHHCCCCCEEEEECC-CCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 65899973778771688---999983793508987089-87689999999985992999817665689877878554467
Q gi|254780558|r 171 ARIAIVVSGLGISQTGT---QRAINLLPANITLAFASN-GNSLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLKV 246 (396)
Q Consensus 171 ~riAIVIddlG~~~~~~---~~ai~~LP~~vT~A~~P~-~~~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~ 246 (396)
-.|+|-+||- .+...+ ...+.+.-.+.||-+.-. .....+..++..+.||||--|- |.. .-+.
T Consensus 43 k~V~LTFDDg-~~~~~~~~iL~~L~~~~i~aTfFv~g~~~~~~~~~~~~~~~~GheIgnHt------~~H------~~~~ 109 (240)
T 1ny1_A 43 KTIYLTFDNG-YENGYTPKVLDVLKKHRVTGTFFVTGHFVKDQPQLIKRMSDEGHIIGNHS------FHH------PDLT 109 (240)
T ss_dssp SEEEEEEEES-SCCSCHHHHHHHHHHTTCCCEEEECHHHHHHCHHHHHHHHHTTCEEEECC------SSC------CCGG
T ss_pred CEEEEEEECC-CCCCCHHHHHHHHHHCCCCEEEEEHHHHHHHCHHHHHHHHHCCCEEEECC------CCC------CCCC
T ss_conf 8799988589-98442899999999859988998323445559899999985898898435------556------8701
Q ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEEC-----CCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCE
Q ss_conf 899899999999999855893598001-----230000498999999999850692899749763226789898709946
Q gi|254780558|r 247 TQTVQQLLNRLRYSLRRGTGYFGVMNY-----RGAMLLSNKESAEVIFKEFAKRGLLFFDDGSSPRNLTRVLAPKLNLPY 321 (396)
Q Consensus 247 ~~~~~~~~~~l~~~l~~~p~~vGvnNh-----mGs~~t~~~~~m~~vl~~l~~rgL~flDs~Ts~~Sva~~~A~~~gvp~ 321 (396)
.++.+++++.+...-..+-...|.... -++.+ +. .+.+.+++.|+-.++-. ..
T Consensus 110 ~~s~~~~~~ei~~~~~~l~~~~G~~~~~~~rpP~g~~--~~----~~~~~l~~~Gy~~v~w~--~~-------------- 167 (240)
T 1ny1_A 110 TKTADQIQDELDSVNEEVYKITGKQDNLYLRPPRGVF--SE----YVLKETKRLGYQTVFWS--VA-------------- 167 (240)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHSCCCCCEECCGGGEE--CH----HHHHHHHHTTCEEBCCS--BC--------------
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCC--CH----HHHHHHHHCCCEEEEEE--EE--------------
T ss_conf 0798999999999999999973875765886998987--78----99999998599799877--44--------------
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCEEEEEEEC-CHHHHHHHHHHHHHHHHCCCEEEEHHHHHH
Q ss_conf 984588628999999999999999999871948999808-878899999997568876918996777430
Q gi|254780558|r 322 MVADLYLDDQVDRDKIREKLKGLEEIARTTGQAIGVAVA-FDESIEVISQWLQQEHVRDVSVVPLSCLAK 390 (396)
Q Consensus 322 ~~~dvfLD~~~~~~~I~~qL~~l~~~Ar~~G~AI~igh~-~p~Ti~~L~~w~~~l~~~gi~lVpvS~l~~ 390 (396)
..|--+++..+...|..++.+ .+ +.|. |.+.|. ++.|+++|...+..|+++|+++|.+++|+.
T Consensus 168 -~~Dw~~~~~~~~~~~~~~~~~---~~-~~g~-IiL~Hd~~~~t~~aL~~ii~~lk~~Gy~fvtl~ell~ 231 (240)
T 1ny1_A 168 -FVDWKINNQKGKKYAYDHMIK---QA-HPGA-IYLLHTVSRDNAEALDDAITDLKKQGYTFKSIDDLMF 231 (240)
T ss_dssp -CSCCCGGGCCCHHHHHHHHHH---TC-CTTE-EEEECSCSTTHHHHHHHHHHHHHHHTCEEECHHHHHH
T ss_pred -CCCCCCCCCHHHHHHHHHHHH---CC-CCCC-EEEEECCCCCHHHHHHHHHHHHHHCCCEEEEHHHHHC
T ss_conf -688554563659999999995---67-9990-8997489956999999999999978999988699551