HHSEARCH alignment of GI: 254780558 and SCOP domain: d1ny1a_

Alignment
>d1ny1a_ c.6.2.3 (A:) Probable polysaccharide deacetylase PdaA {Bacillus subtilis [TaxId: 1423]}
Probab=98.32  E-value=3.4e-06  Score=55.87  Aligned_cols=181  Identities=12%  Similarity=0.027  Sum_probs=111.0

Q ss_pred             CCEEEEEECCCCCCCHHH---HHHHHHCCCCCEEEEEC-CCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             865899973778771688---99998379350898708-98768999999998599299981766568987787855446
Q gi|254780558|r  170 GARIAIVVSGLGISQTGT---QRAINLLPANITLAFAS-NGNSLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLK  245 (396)
Q Consensus       170 ~~riAIVIddlG~~~~~~---~~ai~~LP~~vT~A~~P-~~~~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~  245 (396)
                      .-.|+|-+||- .+...+   .+.+.+.-.+.||-+.- +.....+++++..+.||||-.|-      |..      .-+
T Consensus        42 ~K~V~LTFDDG-p~~~~~~~il~~L~~~~i~aTfFv~g~~~~~~~~~~~~~~~~GheIgnHt------~~H------~~~  108 (235)
T d1ny1a_          42 EKTIYLTFDNG-YENGYTPKVLDVLKKHRVTGTFFVTGHFVKDQPQLIKRMSDEGHIIGNHS------FHH------PDL  108 (235)
T ss_dssp             SSEEEEEEEES-SCCSCHHHHHHHHHHTTCCCEEEECHHHHHHCHHHHHHHHHTTCEEEECC------SSC------CCG
T ss_pred             CCEEEEEEECC-CCCCCHHHHHHHHHHCCCCEEEECCHHHHHHCHHHHHHHHHCCEEEECCC------CCC------CCC
T ss_conf             88699999578-99666899999999769987971328878769899998762384894250------546------782


Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCEEEEE-----CCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCC
Q ss_conf             789989999999999985589359800-----123000049899999999985069289974976322678989870994
Q gi|254780558|r  246 VTQTVQQLLNRLRYSLRRGTGYFGVMN-----YRGAMLLSNKESAEVIFKEFAKRGLLFFDDGSSPRNLTRVLAPKLNLP  320 (396)
Q Consensus       246 ~~~~~~~~~~~l~~~l~~~p~~vGvnN-----hmGs~~t~~~~~m~~vl~~l~~rgL~flDs~Ts~~Sva~~~A~~~gvp  320 (396)
                      ..++.+++.+-|...-..+-...|...     ..++.+  +.    .+++.+++.|+-.++-.-.               
T Consensus       109 ~~~s~~~~~~ei~~~~~~i~~~~G~~~~~~~RpP~g~~--~~----~~~~~l~~~Gy~~v~w~~d---------------  167 (235)
T d1ny1a_         109 TTKTADQIQDELDSVNEEVYKITGKQDNLYLRPPRGVF--SE----YVLKETKRLGYQTVFWSVA---------------  167 (235)
T ss_dssp             GGSCHHHHHHHHHHHHHHHHHHHSCCCCCEECCGGGEE--CH----HHHHHHHHTTCEEBCCSBC---------------
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC--CH----HHHHHHHHCCCEEEEEEEC---------------
T ss_conf             31899999999999999999975214334204787643--34----6789999729969987742---------------


Q ss_pred             EEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCEEEEEEEC-CHHHHHHHHHHHHHHHHCCCEEEEHHHHHHC
Q ss_conf             6984588628999999999999999999871948999808-8788999999975688769189967774306
Q gi|254780558|r  321 YMVADLYLDDQVDRDKIREKLKGLEEIARTTGQAIGVAVA-FDESIEVISQWLQQEHVRDVSVVPLSCLAKL  391 (396)
Q Consensus       321 ~~~~dvfLD~~~~~~~I~~qL~~l~~~Ar~~G~AI~igh~-~p~Ti~~L~~w~~~l~~~gi~lVpvS~l~~~  391 (396)
                        ..|-..++......|.+++.+   .+ +.| +|.+.|. ++.|+++|...++.|+++|+++|++|+|+..
T Consensus       168 --~~Dw~~~~~~~~~~~~~~~~~---~~-~~G-~IvL~Hd~~~~t~~aL~~lI~~lk~~Gy~fvtl~ell~~  232 (235)
T d1ny1a_         168 --FVDWKINNQKGKKYAYDHMIK---QA-HPG-AIYLLHTVSRDNAEALDDAITDLKKQGYTFKSIDDLMFE  232 (235)
T ss_dssp             --CSCCCGGGCCCHHHHHHHHHH---TC-CTT-EEEEECSCSTTHHHHHHHHHHHHHHHTCEEECHHHHHHH
T ss_pred             --CCCCCCCCCHHHHHHHHHHHH---CC-CCC-CEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEHHHHCCC
T ss_conf             --664445560418999999983---56-899-689987997009999999999999789999886994058


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: 7-stranded beta/alpha barrel
superfamily: Glycoside hydrolase/deacetylase
family: NodB-like polysaccharide deacetylase
domain: Probable polysaccharide deacetylase PdaA
species: Bacillus subtilis [TaxId: 1423]