HHSEARCH alignment of GI: 254780558 and SCOP domain: d2c1ia1

Alignment
>d2c1ia1 c.6.2.3 (A:268-463) Peptidoglycan GlcNAc deacetylase C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}
Probab=98.37  E-value=6.4e-05  Score=47.87  Aligned_cols=171  Identities=12%  Similarity=0.113  Sum_probs=104.4

Q ss_pred             EEEEEECCCCCCCHHH---HHHHHHCCCCCEEEEEC-CCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf             5899973778771688---99998379350898708-9876899999999859929998176656898778785544678
Q gi|254780558|r  172 RIAIVVSGLGISQTGT---QRAINLLPANITLAFAS-NGNSLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLKVT  247 (396)
Q Consensus       172 riAIVIddlG~~~~~~---~~ai~~LP~~vT~A~~P-~~~~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~~  247 (396)
                      .|||-+||-. +...+   .+.+.+...+.||-+.. ....-.+.+++..+.||||--|-      |..      .-+..
T Consensus         2 ~VaLTFDDgp-~~~~~~~il~~L~~~~i~aTfFv~g~~~~~~~~~~~~~~~~GheignHt------~~H------~~~~~   68 (196)
T d2c1ia1           2 VVALTFNDGP-NPATTPQVLETLAKYDIKATFFVLGKNVSGNEDLVKRIKSEGHVVGNHS------WSH------PILSQ   68 (196)
T ss_dssp             EEEEEEESCC-CTTTHHHHHHHHHHTTCCCEEEECGGGTTTCHHHHHHHHHTTCEEEECC------SSC------CCGGG
T ss_pred             EEEEEEECCC-CCCCHHHHHHHHHHCCCCEEEEEECHHHHHCCHHHHHHCCCCEEEECCC------CCC------CCHHC
T ss_conf             7999982799-8163999999999869979999975544538477886167874772455------677------53100


Q ss_pred             CCHHHHHHHHHHHHHHCCCCEE-----EEECCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCEE
Q ss_conf             9989999999999985589359-----80012300004989999999998506928997497632267898987099469
Q gi|254780558|r  248 QTVQQLLNRLRYSLRRGTGYFG-----VMNYRGAMLLSNKESAEVIFKEFAKRGLLFFDDGSSPRNLTRVLAPKLNLPYM  322 (396)
Q Consensus       248 ~~~~~~~~~l~~~l~~~p~~vG-----vnNhmGs~~t~~~~~m~~vl~~l~~rgL~flDs~Ts~~Sva~~~A~~~gvp~~  322 (396)
                      ++.++++..+.++...+-...|     .---.|+ +  +..       .++..|+-++                      
T Consensus        69 ~~~~~~~~ei~~~~~~i~~~~G~~~~~fr~P~g~-~--~~~-------~~~~lg~~~v----------------------  116 (196)
T d2c1ia1          69 LSLDEAKKQITDTEDVLTKVLGSSSKLMRPPYGA-I--TDD-------IRNSLDLSFI----------------------  116 (196)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHSCCCCEECCGGGC-C--CHH-------HHHTSSCEEE----------------------
T ss_pred             CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH-C--CHH-------HHHHHHCCEE----------------------
T ss_conf             9999999999999999999758997544386023-1--999-------9998535168----------------------


Q ss_pred             EEEEE-EC-CCCCHHHHHHHHHHHHHHHHHCCEEEEEEE-CCHHHHHHHHHHHHHHHHCCCEEEEHHHHHHCC
Q ss_conf             84588-62-899999999999999999987194899980-887889999999756887691899677743064
Q gi|254780558|r  323 VADLY-LD-DQVDRDKIREKLKGLEEIARTTGQAIGVAV-AFDESIEVISQWLQQEHVRDVSVVPLSCLAKLS  392 (396)
Q Consensus       323 ~~dvf-LD-~~~~~~~I~~qL~~l~~~Ar~~G~AI~igh-~~p~Ti~~L~~w~~~l~~~gi~lVpvS~l~~~~  392 (396)
                      ..++. .| +..+...|..+..+    ..++|. |.+.| .++.|+++|...++.++++|+++|+++++++-.
T Consensus       117 ~~~~~~~D~~~~~~~~i~~~~~~----~~~~g~-IiL~Hd~~~~t~~~L~~li~~lk~~Gy~fvtl~e~l~~~  184 (196)
T d2c1ia1         117 MWDVDSLDWKSKNEASILTEIQH----QVANGS-IVLMHDIHSPTVNALPRVIEYLKNQGYTFVTIPEMLNTR  184 (196)
T ss_dssp             CCSEECCHHHHCCHHHHHHHHHH----HCCTTE-EEEEETTSHHHHHHHHHHHHHHHHTTCEECCHHHHHGGG
T ss_pred             EECCCCCCCCCCCHHHHHHHHHH----CCCCCE-EEEEECCCHHHHHHHHHHHHHHHHCCCEEEEHHHHHCCC
T ss_conf             61124443444699999999984----548992-899858928799999999999998899998889976677


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: 7-stranded beta/alpha barrel
superfamily: Glycoside hydrolase/deacetylase
family: NodB-like polysaccharide deacetylase
domain: Peptidoglycan GlcNAc deacetylase C-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]