HHSEARCH alignment of GI: 254780558 and SCOP domain: d2c71a1

Alignment
>d2c71a1 c.6.2.3 (A:480-683) Xylanase XynA C-terminal domain {Clostridium thermocellum [TaxId: 1515]}
Probab=97.91  E-value=2.6e-05  Score=50.28  Aligned_cols=170  Identities=14%  Similarity=0.093  Sum_probs=99.5

Q ss_pred             EEEEEECCCCCCCHHHH---HHHHHCCCCCEEEEECC-C-CCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf             58999737787716889---99983793508987089-8-7689999999985992999817665689877878554467
Q gi|254780558|r  172 RIAIVVSGLGISQTGTQ---RAINLLPANITLAFASN-G-NSLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLKV  246 (396)
Q Consensus       172 riAIVIddlG~~~~~~~---~ai~~LP~~vT~A~~P~-~-~~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~  246 (396)
                      .|||-+||- .+..-+.   +.+.+.-.+.||-+.-. . .+..+.+++..+.||||--|-      |..      .-+.
T Consensus         2 ~VaLTfDDG-p~~~~t~~il~~L~~~~i~aTFFv~G~~~~~~~~~~~k~i~~~GheIg~Ht------~~H------~~~~   68 (204)
T d2c71a1           2 LVALTFDDG-PDNVLTARVLDKLDKYNVKATFMVVGQRVNDSTAAIIRRMVNSGHEIGNHS------WSY------SGMA   68 (204)
T ss_dssp             EEEEEEESC-CCHHHHHHHHHHHHHHTCCCEEEECGGGCSHHHHHHHHHHHHTTCEEEECC------SSS------SCCT
T ss_pred             EEEEEEECC-CCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHCCEEECCCC------CCC------CCHH
T ss_conf             799998579-981549999999998698099999562300138999998750576870242------456------4554


Q ss_pred             CCCHHHHHHHHHHHHHHCCCCEEEEE----CCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCEE
Q ss_conf             89989999999999985589359800----12300004989999999998506928997497632267898987099469
Q gi|254780558|r  247 TQTVQQLLNRLRYSLRRGTGYFGVMN----YRGAMLLSNKESAEVIFKEFAKRGLLFFDDGSSPRNLTRVLAPKLNLPYM  322 (396)
Q Consensus       247 ~~~~~~~~~~l~~~l~~~p~~vGvnN----hmGs~~t~~~~~m~~vl~~l~~rgL~flDs~Ts~~Sva~~~A~~~gvp~~  322 (396)
                      .++.++++..+..+-..+-.+.|..-    +-+..+  +..    +++.++   ..+.-                     
T Consensus        69 ~~s~~~~~~ei~~~~~~l~~~~G~~~~~fR~P~g~~--~~~----~~~~~~---~~~~~---------------------  118 (204)
T d2c71a1          69 NMSPDQIRKSIADTNAVIQKYAGTTPKFFRPPNLET--SPT----LFNNVD---LVFVG---------------------  118 (204)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHHHSCCCSEECCGGGCC--CHH----HHHHCC---SEEBC---------------------
T ss_pred             HCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC--CHH----HHHHHH---HHHHC---------------------
T ss_conf             429999999999999999997589987445897411--989----999851---01313---------------------


Q ss_pred             EEEEE-EC--CCCCHHHHHHHHHHHHHHHHHCCEEEEEEEC----CHHHHHHHHHHHHHHHHCCCEEEEHHHHHHC
Q ss_conf             84588-62--8999999999999999999871948999808----8788999999975688769189967774306
Q gi|254780558|r  323 VADLY-LD--DQVDRDKIREKLKGLEEIARTTGQAIGVAVA----FDESIEVISQWLQQEHVRDVSVVPLSCLAKL  391 (396)
Q Consensus       323 ~~dvf-LD--~~~~~~~I~~qL~~l~~~Ar~~G~AI~igh~----~p~Ti~~L~~w~~~l~~~gi~lVpvS~l~~~  391 (396)
                        ++. .|  ...+...+...+.+    ..++|.. .+.|-    ...|+++|...++.|+++|+++|++++++..
T Consensus       119 --~~~~~Dw~~~~~~~~~~~~v~~----~~~~G~I-vL~Hd~~~~~~~t~~aL~~li~~lk~~Gy~fvtl~e~l~~  187 (204)
T d2c71a1         119 --GLTANDWIPSTTAEQRAAAVIN----GVRDGTI-ILLHDVQPEPHPTPEALDIIIPTLKSRGYEFVTLTELFTL  187 (204)
T ss_dssp             --CBCCSTTCTTSCHHHHHHHHHH----HCCTTBE-EEEESCCSSSCCHHHHHHHHHHHHHHTTCEECCHHHHHHH
T ss_pred             --CEECCCCCCCCCHHHHHHHHHH----CCCCCCE-EEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEHHHHHCC
T ss_conf             --3010226878889999999982----6799858-9981478865569999999999999889999888998607


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: 7-stranded beta/alpha barrel
superfamily: Glycoside hydrolase/deacetylase
family: NodB-like polysaccharide deacetylase
domain: Xylanase XynA C-terminal domain
species: Clostridium thermocellum [TaxId: 1515]