Query gi|254780558|ref|YP_003064971.1| hypothetical protein CLIBASIA_02225 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 396 No_of_seqs 176 out of 400 Neff 6.1 Searched_HMMs 13730 Date Wed Jun 1 09:50:33 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780558.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d2nlya1 c.6.2.7 (A:31-254) Hyp 100.0 0 0 516.4 23.4 218 171-389 2-223 (224) 2 d2j13a1 c.6.2.3 (A:1-235) Puta 98.5 1.6E-06 1.2E-10 58.0 11.3 181 170-391 44-234 (235) 3 d2c1ia1 c.6.2.3 (A:268-463) Pe 98.4 6.4E-05 4.6E-09 47.9 17.8 171 172-392 2-184 (196) 4 d1ny1a_ c.6.2.3 (A:) Probable 98.3 3.4E-06 2.5E-10 55.9 10.4 181 170-391 42-232 (235) 5 d2iw0a1 c.6.2.3 (A:29-248) Chi 98.3 0.00014 9.9E-09 45.8 18.5 185 171-393 14-214 (220) 6 d2cc0a1 c.6.2.3 (A:1-192) Acet 98.3 3.2E-05 2.3E-09 49.8 14.6 170 171-390 5-187 (192) 7 d2c71a1 c.6.2.3 (A:480-683) Xy 97.9 2.6E-05 1.9E-09 50.3 8.1 170 172-391 2-187 (204) 8 d2i5ia1 c.6.2.8 (A:2-262) Unch 96.7 0.019 1.4E-06 32.2 17.4 213 172-388 4-259 (261) 9 d1z7aa1 c.6.2.6 (A:4-304) Hypo 96.7 0.0078 5.7E-07 34.7 9.0 184 186-390 82-292 (301) 10 d1v6ta_ c.6.2.5 (A:) Hypotheti 96.6 0.02 1.5E-06 32.1 15.9 195 178-389 7-254 (254) 11 d1xw8a_ c.6.2.5 (A:) Hypotheti 95.1 0.086 6.3E-06 28.1 8.7 193 178-385 7-245 (247) 12 d2dfaa1 c.6.2.5 (A:1-250) Hypo 94.9 0.11 7.8E-06 27.5 11.1 191 178-384 7-249 (250) 13 d1i60a_ c.1.15.4 (A:) Hypothet 73.0 2.5 0.00018 18.9 12.1 81 207-301 84-173 (278) 14 d2chra1 c.1.11.2 (A:127-370) C 72.6 2.5 0.00019 18.8 7.5 139 208-365 20-177 (244) 15 d1nlfa_ c.37.1.11 (A:) Hexamer 57.9 4.9 0.00035 17.0 13.1 100 244-363 73-182 (274) 16 d1muca1 c.1.11.2 (A:131-372) M 54.5 5.5 0.0004 16.7 8.6 149 194-362 6-174 (242) 17 d1qgoa_ c.92.1.2 (A:) Cobalt c 54.5 5.5 0.0004 16.7 16.7 186 172-385 1-233 (257) 18 d1nu5a1 c.1.11.2 (A:127-369) C 53.9 5.7 0.00041 16.6 9.3 142 211-372 23-186 (243) 19 d1byra_ d.136.1.1 (A:) Nucleas 45.0 7.8 0.00057 15.8 7.3 65 196-278 2-66 (152) 20 d2pjua1 c.92.3.1 (A:11-196) Pr 44.4 7.9 0.00058 15.7 10.0 95 244-350 74-185 (186) 21 d1nxia_ d.58.47.1 (A:) Hypothe 43.1 8.3 0.00061 15.6 3.2 93 251-353 19-113 (132) 22 d2q8za1 c.1.2.3 (A:1-323) Prot 41.0 6.6 0.00048 16.2 2.0 17 209-225 119-135 (323) 23 d2q02a1 c.1.15.4 (A:1-271) Put 39.2 9.6 0.0007 15.2 9.0 17 210-226 87-103 (271) 24 d1jpdx1 c.1.11.2 (X:114-321) L 36.3 11 0.00077 14.9 5.7 141 194-362 2-165 (208) 25 d1sjda1 c.1.11.2 (A:126-367) N 35.9 11 0.00078 14.9 4.7 141 194-362 5-169 (242) 26 d1x64a2 g.39.1.3 (A:53-83) PDZ 35.8 4.6 0.00034 17.2 0.5 12 292-303 9-20 (31) 27 d1to3a_ c.1.10.1 (A:) Putative 35.2 11 0.0008 14.8 3.7 18 209-226 142-159 (291) 28 d1o98a2 c.76.1.3 (A:2-76,A:311 33.9 11 0.00082 14.7 2.3 15 172-186 5-19 (275) 29 d2csua3 c.23.4.1 (A:291-453) A 33.8 12 0.00085 14.7 14.5 152 169-352 2-162 (163) 30 d1kpga_ c.66.1.18 (A:) CmaA1 { 32.6 8.9 0.00065 15.4 1.6 170 175-378 66-244 (285) 31 d1x62a1 g.39.1.3 (A:43-73) PDZ 30.5 4.7 0.00034 17.2 -0.2 12 292-303 9-20 (31) 32 d1u1ia1 c.2.1.3 (A:1-227,A:333 29.0 14 0.001 14.2 5.1 88 283-376 181-287 (287) 33 d2fdsa1 c.1.2.3 (A:1-324) Prot 28.2 14 0.0011 14.1 8.9 132 209-374 121-260 (324) 34 d2g0wa1 c.1.15.4 (A:10-284) Hy 26.7 15 0.0011 13.9 9.8 100 185-302 50-163 (275) 35 d1m5wa_ c.1.24.1 (A:) Pyridoxi 25.9 16 0.0012 13.8 7.3 114 258-376 80-209 (242) 36 d1uv7a_ d.67.4.1 (A:) General 24.5 15 0.0011 13.9 1.6 41 346-386 9-59 (80) 37 d1kpia_ c.66.1.18 (A:) CmaA2 { 24.4 17 0.0012 13.6 3.4 170 174-378 64-250 (291) 38 d1o98a1 c.105.1.1 (A:77-310) 2 22.0 19 0.0014 13.3 5.5 50 311-360 57-110 (234) 39 d2gnpa1 c.124.1.8 (A:56-317) T 21.8 19 0.0014 13.3 5.4 18 314-331 178-195 (262) 40 d2ptza1 c.1.11.1 (A:139-429) E 21.0 20 0.0014 13.2 8.6 110 247-365 130-239 (291) 41 d1hjsa_ c.1.8.3 (A:) Beta-1,4- 20.9 20 0.0014 13.2 5.7 145 207-359 60-245 (332) No 1 >d2nlya1 c.6.2.7 (A:31-254) Hypothetical protein BH1492 {Bacillus halodurans [TaxId: 86665]} Probab=100.00 E-value=0 Score=516.43 Aligned_cols=218 Identities=21% Similarity=0.325 Sum_probs=212.5 Q ss_pred CEEEEEECCCCCCCHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCH Q ss_conf 65899973778771688999983793508987089876899999999859929998176656898778785544678998 Q gi|254780558|r 171 ARIAIVVSGLGISQTGTQRAINLLPANITLAFASNGNSLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLKVTQTV 250 (396) Q Consensus 171 ~riAIVIddlG~~~~~~~~ai~~LP~~vT~A~~P~~~~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~~~~~ 250 (396) +||||||||+|++...+++ +.+||+||||||+||.+++.+|++.||++||||||||||||.+|+.+||||++|+++|++ T Consensus 2 ~riAIVIdD~G~~~~~~~~-~~~Lp~pvT~Ai~P~~~~~~~~a~~A~~~g~EvllhlPMep~~~~~~~~gp~~L~~~~~~ 80 (224) T d2nlya1 2 KRAAIIIDDFGGDVKGVDD-FLTGEIPVTVAVMPFLEHSTKQAEIAQAAGLEVIVHMPLEPKKGKISWLGPSGITSNLSV 80 (224) T ss_dssp EEEEEEEEEESSCCTTHHH-HHTCSSCEEEEECSSSTTHHHHHHHHHHTTCEEEEEEEECCC--------CCCBCTTCCH T ss_pred CEEEEEEECCCCCHHHHHH-HHCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCH T ss_conf 7199999679998689999-975898758998799986199999999879869997455756677678887767778999 Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCEEEEEEEECC Q ss_conf 99999999999855893598001230000498999999999850692899749763226789898709946984588628 Q gi|254780558|r 251 QQLLNRLRYSLRRGTGYFGVMNYRGAMLLSNKESAEVIFKEFAKRGLLFFDDGSSPRNLTRVLAPKLNLPYMVADLYLDD 330 (396) Q Consensus 251 ~~~~~~l~~~l~~~p~~vGvnNhmGs~~t~~~~~m~~vl~~l~~rgL~flDs~Ts~~Sva~~~A~~~gvp~~~~dvfLD~ 330 (396) +||+++|+|+|+++|+|+||||||||+||+|+..|+++|++|++||||||||+|+++|+++++|++.|+|+++||||||| T Consensus 81 ~ei~~~l~~~l~~vP~avGvnNhmGS~~T~~~~~m~~v~~~l~~~gl~fvDS~T~~~sva~~~A~~~gvp~~~rdvfLD~ 160 (224) T d2nlya1 81 GEVKSRVRKAFDDIPYAVGLNNHMGSKIVENEKIMRAILEVVKEKNAFIIDSGTSPHSLIPQLAEELEVPYATRSIFLDN 160 (224) T ss_dssp HHHHHHHHHHHHHSTTCCEEEEEECTTGGGCHHHHHHHHHHHHHTTCEEEECCCCSSCSHHHHHHHTTCCEEECCEESCC T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCHHCCHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHCCCCEEEEEEECCC T ss_conf 99999999999847364797137664111798999999999977697899327774668999998759985888786579 Q ss_pred CCC-HHHHHHHHHHHHHHHHHCCEEEEEEE---CCHHHHHHHHHHHHHHHHCCCEEEEHHHHH Q ss_conf 999-99999999999999987194899980---887889999999756887691899677743 Q gi|254780558|r 331 QVD-RDKIREKLKGLEEIARTTGQAIGVAV---AFDESIEVISQWLQQEHVRDVSVVPLSCLA 389 (396) Q Consensus 331 ~~~-~~~I~~qL~~l~~~Ar~~G~AI~igh---~~p~Ti~~L~~w~~~l~~~gi~lVpvS~l~ 389 (396) +++ ...|++||++++++|+++|+||+||| +||+|+++|++|+++++++||+|||+|+|+ T Consensus 161 ~~~~~~~I~~~l~~~~~~A~~~G~AI~IGH~~~p~p~Tl~~L~~~l~~l~~~gi~lvpvS~ll 223 (224) T d2nlya1 161 THSSRKEVIKNMRKLAKKAKQGSEPIGIGHVGVRGDETYAGIRSMLDEFQAESIQLVPVSQLL 223 (224) T ss_dssp TTCCHHHHHHHHHHHHHHHHTTSCCEEEEECSTTHHHHHHHHGGGHHHHHHTTEEECCGGGGC T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCEEEEEHHHHC T ss_conf 997199999999999999873696799983799976899999997357765887999778837 No 2 >d2j13a1 c.6.2.3 (A:1-235) Putative polysaccharide deacetylase BA0424 {Bacillus anthracis [TaxId: 1392]} Probab=98.45 E-value=1.6e-06 Score=57.97 Aligned_cols=181 Identities=12% Similarity=0.030 Sum_probs=109.0 Q ss_pred CCEEEEEECCCCCCCHHH---HHHHHHCCCCCEEEEECCC-CCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCC Q ss_conf 865899973778771688---9999837935089870898-768999999998599299981766568987787855446 Q gi|254780558|r 170 GARIAIVVSGLGISQTGT---QRAINLLPANITLAFASNG-NSLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLK 245 (396) Q Consensus 170 ~~riAIVIddlG~~~~~~---~~ai~~LP~~vT~A~~P~~-~~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~ 245 (396) ...|+|-+|| |.+...+ ...+.+.-.+.||-+.... ....+.+++..+.||||-.|- |... -+ T Consensus 44 ~k~VaLTFDD-G~~~~~t~~ll~~L~~~~i~ATfFv~g~~~~~~p~~~~~~~~~GheIg~Ht------~~H~------~l 110 (235) T d2j13a1 44 KKDIYLTFDN-GYENGYTGKILDVLKEKKVPATFFVTGHYIKTQKDLLLRMKDEGHIIGNHS------WSHP------DF 110 (235) T ss_dssp SCEEEEEEEE-SSCCSCHHHHHHHHHHHTCCEEEEECHHHHHHCHHHHHHHHHTTCEEEECC------SSCC------CG T ss_pred CCEEEEEEEC-CCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHCCCEEEEEEE------CCCC------CH T ss_conf 9879999876-898465699999999849987999926764338899997643890875331------5777------72 Q ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEE--CC---CCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCC Q ss_conf 789989999999999985589359800--12---3000049899999999985069289974976322678989870994 Q gi|254780558|r 246 VTQTVQQLLNRLRYSLRRGTGYFGVMN--YR---GAMLLSNKESAEVIFKEFAKRGLLFFDDGSSPRNLTRVLAPKLNLP 320 (396) Q Consensus 246 ~~~~~~~~~~~l~~~l~~~p~~vGvnN--hm---Gs~~t~~~~~m~~vl~~l~~rgL~flDs~Ts~~Sva~~~A~~~gvp 320 (396) ..++.+++.+-+......+-...|... ++ ++.+ +. .+.+.+++.|+.++.-... + T Consensus 111 ~~ls~~~~~~ei~~~~~~l~~~~G~~~~~~~rpp~G~~--~~----~~~~~l~~~Gy~~~~w~~~--~------------ 170 (235) T d2j13a1 111 TAVNDEKLREELTSVTEEIKKVTGQKEVKYVRPPRGVF--SE----RTLALTKEMGYYNVFWSLA--F------------ 170 (235) T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHCCSCCCEECCGGGEE--CH----HHHHHHHHTTCEEECCSEE--C------------ T ss_pred HHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH--HH----HHHHHHHHCCCEEEECCCC--C------------ T ss_conf 23799999999999999999985335565566871443--04----6689999819857626888--7------------ Q ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCEEEEEEEC-CHHHHHHHHHHHHHHHHCCCEEEEHHHHHHC Q ss_conf 6984588628999999999999999999871948999808-8788999999975688769189967774306 Q gi|254780558|r 321 YMVADLYLDDQVDRDKIREKLKGLEEIARTTGQAIGVAVA-FDESIEVISQWLQQEHVRDVSVVPLSCLAKL 391 (396) Q Consensus 321 ~~~~dvfLD~~~~~~~I~~qL~~l~~~Ar~~G~AI~igh~-~p~Ti~~L~~w~~~l~~~gi~lVpvS~l~~~ 391 (396) .|--.|...+.+.|..++.+ ..+.| .|.+.|. ++.|+++|...++.++++|+++|++|+|++. T Consensus 171 ---~Dw~~~~~~~~~~~~~~~~~----~~~~g-~IillHd~~~~t~~aL~~li~~lk~~Gy~fvtl~ell~~ 234 (235) T d2j13a1 171 ---LDWKVDEQRGWQYAHNNVMT----MIHPG-SILLLHAISKDNAEALAKIIDDLREKGYHFKSLDDLVKS 234 (235) T ss_dssp ---CCC----------------------CCTT-BEEEECCCSTTHHHHHHHHHHHHHHTTCEEECHHHHHHT T ss_pred ---CCCCCCCCHHHHHHHHHHHH----CCCCC-CEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEHHHHHHC T ss_conf ---77765431049999999995----37999-489845999479999999999999789999886998612 No 3 >d2c1ia1 c.6.2.3 (A:268-463) Peptidoglycan GlcNAc deacetylase C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Probab=98.37 E-value=6.4e-05 Score=47.87 Aligned_cols=171 Identities=12% Similarity=0.113 Sum_probs=104.4 Q ss_pred EEEEEECCCCCCCHHH---HHHHHHCCCCCEEEEEC-CCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCC Q ss_conf 5899973778771688---99998379350898708-9876899999999859929998176656898778785544678 Q gi|254780558|r 172 RIAIVVSGLGISQTGT---QRAINLLPANITLAFAS-NGNSLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLKVT 247 (396) Q Consensus 172 riAIVIddlG~~~~~~---~~ai~~LP~~vT~A~~P-~~~~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~~ 247 (396) .|||-+||-. +...+ .+.+.+...+.||-+.. ....-.+.+++..+.||||--|- |.. .-+.. T Consensus 2 ~VaLTFDDgp-~~~~~~~il~~L~~~~i~aTfFv~g~~~~~~~~~~~~~~~~GheignHt------~~H------~~~~~ 68 (196) T d2c1ia1 2 VVALTFNDGP-NPATTPQVLETLAKYDIKATFFVLGKNVSGNEDLVKRIKSEGHVVGNHS------WSH------PILSQ 68 (196) T ss_dssp EEEEEEESCC-CTTTHHHHHHHHHHTTCCCEEEECGGGTTTCHHHHHHHHHTTCEEEECC------SSC------CCGGG T ss_pred EEEEEEECCC-CCCCHHHHHHHHHHCCCCEEEEEECHHHHHCCHHHHHHCCCCEEEECCC------CCC------CCHHC T ss_conf 7999982799-8163999999999869979999975544538477886167874772455------677------53100 Q ss_pred CCHHHHHHHHHHHHHHCCCCEE-----EEECCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCEE Q ss_conf 9989999999999985589359-----80012300004989999999998506928997497632267898987099469 Q gi|254780558|r 248 QTVQQLLNRLRYSLRRGTGYFG-----VMNYRGAMLLSNKESAEVIFKEFAKRGLLFFDDGSSPRNLTRVLAPKLNLPYM 322 (396) Q Consensus 248 ~~~~~~~~~l~~~l~~~p~~vG-----vnNhmGs~~t~~~~~m~~vl~~l~~rgL~flDs~Ts~~Sva~~~A~~~gvp~~ 322 (396) ++.++++..+.++...+-...| .---.|+ + +.. .++..|+-++ T Consensus 69 ~~~~~~~~ei~~~~~~i~~~~G~~~~~fr~P~g~-~--~~~-------~~~~lg~~~v---------------------- 116 (196) T d2c1ia1 69 LSLDEAKKQITDTEDVLTKVLGSSSKLMRPPYGA-I--TDD-------IRNSLDLSFI---------------------- 116 (196) T ss_dssp SCHHHHHHHHHHHHHHHHHHHSCCCCEECCGGGC-C--CHH-------HHHTSSCEEE---------------------- T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH-C--CHH-------HHHHHHCCEE---------------------- T ss_conf 9999999999999999999758997544386023-1--999-------9998535168---------------------- Q ss_pred EEEEE-EC-CCCCHHHHHHHHHHHHHHHHHCCEEEEEEE-CCHHHHHHHHHHHHHHHHCCCEEEEHHHHHHCC Q ss_conf 84588-62-899999999999999999987194899980-887889999999756887691899677743064 Q gi|254780558|r 323 VADLY-LD-DQVDRDKIREKLKGLEEIARTTGQAIGVAV-AFDESIEVISQWLQQEHVRDVSVVPLSCLAKLS 392 (396) Q Consensus 323 ~~dvf-LD-~~~~~~~I~~qL~~l~~~Ar~~G~AI~igh-~~p~Ti~~L~~w~~~l~~~gi~lVpvS~l~~~~ 392 (396) ..++. .| +..+...|..+..+ ..++|. |.+.| .++.|+++|...++.++++|+++|+++++++-. T Consensus 117 ~~~~~~~D~~~~~~~~i~~~~~~----~~~~g~-IiL~Hd~~~~t~~~L~~li~~lk~~Gy~fvtl~e~l~~~ 184 (196) T d2c1ia1 117 MWDVDSLDWKSKNEASILTEIQH----QVANGS-IVLMHDIHSPTVNALPRVIEYLKNQGYTFVTIPEMLNTR 184 (196) T ss_dssp CCSEECCHHHHCCHHHHHHHHHH----HCCTTE-EEEEETTSHHHHHHHHHHHHHHHHTTCEECCHHHHHGGG T ss_pred EECCCCCCCCCCCHHHHHHHHHH----CCCCCE-EEEEECCCHHHHHHHHHHHHHHHHCCCEEEEHHHHHCCC T ss_conf 61124443444699999999984----548992-899858928799999999999998899998889976677 No 4 >d1ny1a_ c.6.2.3 (A:) Probable polysaccharide deacetylase PdaA {Bacillus subtilis [TaxId: 1423]} Probab=98.32 E-value=3.4e-06 Score=55.87 Aligned_cols=181 Identities=12% Similarity=0.027 Sum_probs=111.0 Q ss_pred CCEEEEEECCCCCCCHHH---HHHHHHCCCCCEEEEEC-CCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCC Q ss_conf 865899973778771688---99998379350898708-98768999999998599299981766568987787855446 Q gi|254780558|r 170 GARIAIVVSGLGISQTGT---QRAINLLPANITLAFAS-NGNSLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLK 245 (396) Q Consensus 170 ~~riAIVIddlG~~~~~~---~~ai~~LP~~vT~A~~P-~~~~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~ 245 (396) .-.|+|-+||- .+...+ .+.+.+.-.+.||-+.- +.....+++++..+.||||-.|- |.. .-+ T Consensus 42 ~K~V~LTFDDG-p~~~~~~~il~~L~~~~i~aTfFv~g~~~~~~~~~~~~~~~~GheIgnHt------~~H------~~~ 108 (235) T d1ny1a_ 42 EKTIYLTFDNG-YENGYTPKVLDVLKKHRVTGTFFVTGHFVKDQPQLIKRMSDEGHIIGNHS------FHH------PDL 108 (235) T ss_dssp SSEEEEEEEES-SCCSCHHHHHHHHHHTTCCCEEEECHHHHHHCHHHHHHHHHTTCEEEECC------SSC------CCG T ss_pred CCEEEEEEECC-CCCCCHHHHHHHHHHCCCCEEEECCHHHHHHCHHHHHHHHHCCEEEECCC------CCC------CCC T ss_conf 88699999578-99666899999999769987971328878769899998762384894250------546------782 Q ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEE-----CCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCC Q ss_conf 789989999999999985589359800-----123000049899999999985069289974976322678989870994 Q gi|254780558|r 246 VTQTVQQLLNRLRYSLRRGTGYFGVMN-----YRGAMLLSNKESAEVIFKEFAKRGLLFFDDGSSPRNLTRVLAPKLNLP 320 (396) Q Consensus 246 ~~~~~~~~~~~l~~~l~~~p~~vGvnN-----hmGs~~t~~~~~m~~vl~~l~~rgL~flDs~Ts~~Sva~~~A~~~gvp 320 (396) ..++.+++.+-|...-..+-...|... ..++.+ +. .+++.+++.|+-.++-.-. T Consensus 109 ~~~s~~~~~~ei~~~~~~i~~~~G~~~~~~~RpP~g~~--~~----~~~~~l~~~Gy~~v~w~~d--------------- 167 (235) T d1ny1a_ 109 TTKTADQIQDELDSVNEEVYKITGKQDNLYLRPPRGVF--SE----YVLKETKRLGYQTVFWSVA--------------- 167 (235) T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHSCCCCCEECCGGGEE--CH----HHHHHHHHTTCEEBCCSBC--------------- T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC--CH----HHHHHHHHCCCEEEEEEEC--------------- T ss_conf 31899999999999999999975214334204787643--34----6789999729969987742--------------- Q ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCEEEEEEEC-CHHHHHHHHHHHHHHHHCCCEEEEHHHHHHC Q ss_conf 6984588628999999999999999999871948999808-8788999999975688769189967774306 Q gi|254780558|r 321 YMVADLYLDDQVDRDKIREKLKGLEEIARTTGQAIGVAVA-FDESIEVISQWLQQEHVRDVSVVPLSCLAKL 391 (396) Q Consensus 321 ~~~~dvfLD~~~~~~~I~~qL~~l~~~Ar~~G~AI~igh~-~p~Ti~~L~~w~~~l~~~gi~lVpvS~l~~~ 391 (396) ..|-..++......|.+++.+ .+ +.| +|.+.|. ++.|+++|...++.|+++|+++|++|+|+.. T Consensus 168 --~~Dw~~~~~~~~~~~~~~~~~---~~-~~G-~IvL~Hd~~~~t~~aL~~lI~~lk~~Gy~fvtl~ell~~ 232 (235) T d1ny1a_ 168 --FVDWKINNQKGKKYAYDHMIK---QA-HPG-AIYLLHTVSRDNAEALDDAITDLKKQGYTFKSIDDLMFE 232 (235) T ss_dssp --CSCCCGGGCCCHHHHHHHHHH---TC-CTT-EEEEECSCSTTHHHHHHHHHHHHHHHTCEEECHHHHHHH T ss_pred --CCCCCCCCCHHHHHHHHHHHH---CC-CCC-CEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEHHHHCCC T ss_conf --664445560418999999983---56-899-689987997009999999999999789999886994058 No 5 >d2iw0a1 c.6.2.3 (A:29-248) Chitin deacetylase {Bean anthracnose fungus (Colletotrichum lindemuthianum) [TaxId: 290576]} Probab=98.28 E-value=0.00014 Score=45.78 Aligned_cols=185 Identities=10% Similarity=0.026 Sum_probs=106.9 Q ss_pred CEEEEEECCCCCCCHHHHH---HHHHCCCCCEEEEECC------CCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCC Q ss_conf 6589997377877168899---9983793508987089------876899999999859929998176656898778785 Q gi|254780558|r 171 ARIAIVVSGLGISQTGTQR---AINLLPANITLAFASN------GNSLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDS 241 (396) Q Consensus 171 ~riAIVIddlG~~~~~~~~---ai~~LP~~vT~A~~P~------~~~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp 241 (396) -.|||-+|| |.+. .+.+ .+.+...+.||-+... .....+.+++..+.||||-.|- |.. T Consensus 14 ~~VaLTFDD-Gp~~-~t~~il~~L~~~~i~aTFFv~g~~i~~~~~~~~p~~~~~~~~~GheIgnHt------~~H----- 80 (220) T d2iw0a1 14 GLVALTYDD-GPFT-FTPQLLDILKQNDVRATFFVNGNNWANIEAGSNPDTIRRMRADGHLVGSHT------YAH----- 80 (220) T ss_dssp SEEEEEEES-CSCT-THHHHHHHHHHHTCCCEEEECSBSSSBTTSTTHHHHHHHHHHTTCEEEECC------SSC----- T ss_pred CEEEEEEEC-CCCH-HHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHCHHHHHHHHHCCCEEECCC------CCC----- T ss_conf 989998707-9846-499999999986997899996554566514449999999983672772021------356----- Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEC-C---CCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHH Q ss_conf 54467899899999999999855893598001-2---3000049899999999985069289974976322678989870 Q gi|254780558|r 242 YTLKVTQTVQQLLNRLRYSLRRGTGYFGVMNY-R---GAMLLSNKESAEVIFKEFAKRGLLFFDDGSSPRNLTRVLAPKL 317 (396) Q Consensus 242 ~~L~~~~~~~~~~~~l~~~l~~~p~~vGvnNh-m---Gs~~t~~~~~m~~vl~~l~~rgL~flDs~Ts~~Sva~~~A~~~ 317 (396) .-+..++.+++.+.+.+.-..+-...|..-. + .+.+ +. .+.+.++++|+-+++- +-.| T Consensus 81 -~~~~~ls~~~~~~ei~~~~~~i~~~~g~~~~~fR~P~g~~--~~----~~~~~l~~~G~~~v~w--~~d~--------- 142 (220) T d2iw0a1 81 -PDLNTLSSADRISQMRQLEEATRRIDGFAPKYMRAPYLSC--DA----GCQGDLGGLGYHIIDT--NLDT--------- 142 (220) T ss_dssp -CCGGGSCHHHHHHHHHHHHHHHHHHHSCEESEECCGGGCC--CH----HHHHHHHHTTCEEECC--SEEC--------- T ss_pred -CCHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH--HH----HHHHHHHHCCCEEEEC--CCCC--------- T ss_conf -5465516688889999999999996399974346716778--67----7899999649989937--6355--------- Q ss_pred CCCEEEEEEEECC-CCCHHHHHHHHHHHHHHHHHCCEEEEEEEC-CHHHHHHH-HHHHHHHHHCCCEEEEHHHHHHCCC Q ss_conf 9946984588628-999999999999999999871948999808-87889999-9997568876918996777430647 Q gi|254780558|r 318 NLPYMVADLYLDD-QVDRDKIREKLKGLEEIARTTGQAIGVAVA-FDESIEVI-SQWLQQEHVRDVSVVPLSCLAKLSS 393 (396) Q Consensus 318 gvp~~~~dvfLD~-~~~~~~I~~qL~~l~~~Ar~~G~AI~igh~-~p~Ti~~L-~~w~~~l~~~gi~lVpvS~l~~~~~ 393 (396) .| +..+ .........++.+-...+.+.|..|.+.|- ++.|...+ ...++.|+++|+++|+|++|+.... T Consensus 143 ------~D-w~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvL~HD~~~~t~~~~l~~ii~~lk~~Gy~fvtl~ell~~~~ 214 (220) T d2iw0a1 143 ------KD-YENNKPETTHLSAEKFNNELSADVGANSYIVLSHDVHEQTVVSLTQKLIDTLKSKGYRAVTVGECLGDAP 214 (220) T ss_dssp ------CT-TTSCSTTTHHHHHHHHHHHSCSCGGGCCEEEEECTTSHHHHHTHHHHHHHHHHHTTCEECCHHHHTTCCG T ss_pred ------CC-CCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEHHHHHCCCH T ss_conf ------31-3468974268899999999964248998799847996425999999999999987999988899635533 No 6 >d2cc0a1 c.6.2.3 (A:1-192) Acetyl-xylan esterase {Streptomyces lividans [TaxId: 1916]} Probab=98.28 E-value=3.2e-05 Score=49.77 Aligned_cols=170 Identities=15% Similarity=0.032 Sum_probs=108.3 Q ss_pred CEEEEEECCCCCCCHHHHH---HHHHCCCCCEEEEECCCCCH---HHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCC Q ss_conf 6589997377877168899---99837935089870898768---99999999859929998176656898778785544 Q gi|254780558|r 171 ARIAIVVSGLGISQTGTQR---AINLLPANITLAFASNGNSL---DRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTL 244 (396) Q Consensus 171 ~riAIVIddlG~~~~~~~~---ai~~LP~~vT~A~~P~~~~~---~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L 244 (396) ..|||-+|| |.+. .+.+ .+.+--.+.||-+. +... .+++++..+.||||-.|- |.. .- T Consensus 5 g~VaLTFDD-Gp~~-~t~~il~~L~~~~v~aTFFv~--G~~~~~~p~~~~~~~~~GheIgnHs------~~H------~~ 68 (192) T d2cc0a1 5 GYVGLTFDD-GPSG-STQSLLNALRQNGLRATMFNQ--GQYAAQNPSLVRAQVDAGMWVANHS------YTH------PH 68 (192) T ss_dssp EEEEEEEES-CCST-THHHHHHHHHHTTCCCEEEEC--HHHHHHCHHHHHHHHHTTCEEEECC------SSC------CC T ss_pred CEEEEEEEC-CCCH-HHHHHHHHHHHCCCCEEEEEE--CCCCCCCCHHHHHHHHHHHHHHHHH------CCC------CC T ss_conf 989998726-9825-399999999983981999995--6452337246676764114877512------428------64 Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEEC----CCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCC Q ss_conf 67899899999999999855893598001----23000049899999999985069289974976322678989870994 Q gi|254780558|r 245 KVTQTVQQLLNRLRYSLRRGTGYFGVMNY----RGAMLLSNKESAEVIFKEFAKRGLLFFDDGSSPRNLTRVLAPKLNLP 320 (396) Q Consensus 245 ~~~~~~~~~~~~l~~~l~~~p~~vGvnNh----mGs~~t~~~~~m~~vl~~l~~rgL~flDs~Ts~~Sva~~~A~~~gvp 320 (396) +..++.++++..|.+....+-...|..-. -++.+ +. .+.+.+++.|+-.++- T Consensus 69 ~~~ls~~~~~~ei~~~~~~i~~~~g~~~~~fR~P~g~~--~~----~~~~~l~~~G~~~v~w------------------ 124 (192) T d2cc0a1 69 MTQLGQAQMDSEISRTQQAIAGAGGGTPKLFRPPYGET--NA----TLRSVEAKYGLTEVIW------------------ 124 (192) T ss_dssp GGGSCHHHHHHHHHHHHHHHHHTTSCCCSEECCGGGCC--CH----HHHHHHHHTTCEECCC------------------ T ss_pred HHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH--HH----HHHHHHHHCCCCCCCC------------------ T ss_conf 00100788999999999999997688753403863654--25----5789999759845428------------------ Q ss_pred EEEEEE-EEC-CCCCHHHHHHHHHHHHHHHHHCCEEEEEEEC-CHHHHHHHHHHHHHHHHCCCEEEEHHHHHH Q ss_conf 698458-862-8999999999999999999871948999808-878899999997568876918996777430 Q gi|254780558|r 321 YMVADL-YLD-DQVDRDKIREKLKGLEEIARTTGQAIGVAVA-FDESIEVISQWLQQEHVRDVSVVPLSCLAK 390 (396) Q Consensus 321 ~~~~dv-fLD-~~~~~~~I~~qL~~l~~~Ar~~G~AI~igh~-~p~Ti~~L~~w~~~l~~~gi~lVpvS~l~~ 390 (396) ++ ..| ...+.+.|.+.+.+ .++|. |.+-|- ++.|+++|...++.|+++|+++|.+|++.- T Consensus 125 ----~vd~~Dw~~~~~~~i~~~v~~-----~~~G~-IiL~Hd~~~~t~~aL~~ii~~lk~~Gy~fvtlse~~~ 187 (192) T d2cc0a1 125 ----DVDSQDWNNASTDAIVQAVSR-----LGNGQ-VILMHDWPANTLAAIPRIAQTLAGKGLCSGMISPQTG 187 (192) T ss_dssp ----SEECCGGGTCCHHHHHHHHHT-----CCTTC-EEEEESSCHHHHHHHHHHHHHHHHTTEEECEECTTTS T ss_pred ----CCCCCCCCCCCHHHHHHHHHC-----CCCCE-EEEEECCCHHHHHHHHHHHHHHHHCCCEEEECCCCCC T ss_conf ----998565666899999999726-----58996-9997189520999999999999988998997266768 No 7 >d2c71a1 c.6.2.3 (A:480-683) Xylanase XynA C-terminal domain {Clostridium thermocellum [TaxId: 1515]} Probab=97.91 E-value=2.6e-05 Score=50.28 Aligned_cols=170 Identities=14% Similarity=0.093 Sum_probs=99.5 Q ss_pred EEEEEECCCCCCCHHHH---HHHHHCCCCCEEEEECC-C-CCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCC Q ss_conf 58999737787716889---99983793508987089-8-7689999999985992999817665689877878554467 Q gi|254780558|r 172 RIAIVVSGLGISQTGTQ---RAINLLPANITLAFASN-G-NSLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLKV 246 (396) Q Consensus 172 riAIVIddlG~~~~~~~---~ai~~LP~~vT~A~~P~-~-~~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~ 246 (396) .|||-+||- .+..-+. +.+.+.-.+.||-+.-. . .+..+.+++..+.||||--|- |.. .-+. T Consensus 2 ~VaLTfDDG-p~~~~t~~il~~L~~~~i~aTFFv~G~~~~~~~~~~~k~i~~~GheIg~Ht------~~H------~~~~ 68 (204) T d2c71a1 2 LVALTFDDG-PDNVLTARVLDKLDKYNVKATFMVVGQRVNDSTAAIIRRMVNSGHEIGNHS------WSY------SGMA 68 (204) T ss_dssp EEEEEEESC-CCHHHHHHHHHHHHHHTCCCEEEECGGGCSHHHHHHHHHHHHTTCEEEECC------SSS------SCCT T ss_pred EEEEEEECC-CCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHCCEEECCCC------CCC------CCHH T ss_conf 799998579-981549999999998698099999562300138999998750576870242------456------4554 Q ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEE----CCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCEE Q ss_conf 89989999999999985589359800----12300004989999999998506928997497632267898987099469 Q gi|254780558|r 247 TQTVQQLLNRLRYSLRRGTGYFGVMN----YRGAMLLSNKESAEVIFKEFAKRGLLFFDDGSSPRNLTRVLAPKLNLPYM 322 (396) Q Consensus 247 ~~~~~~~~~~l~~~l~~~p~~vGvnN----hmGs~~t~~~~~m~~vl~~l~~rgL~flDs~Ts~~Sva~~~A~~~gvp~~ 322 (396) .++.++++..+..+-..+-.+.|..- +-+..+ +.. +++.++ ..+.- T Consensus 69 ~~s~~~~~~ei~~~~~~l~~~~G~~~~~fR~P~g~~--~~~----~~~~~~---~~~~~--------------------- 118 (204) T d2c71a1 69 NMSPDQIRKSIADTNAVIQKYAGTTPKFFRPPNLET--SPT----LFNNVD---LVFVG--------------------- 118 (204) T ss_dssp TCCHHHHHHHHHHHHHHHHHHHSCCCSEECCGGGCC--CHH----HHHHCC---SEEBC--------------------- T ss_pred HCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC--CHH----HHHHHH---HHHHC--------------------- T ss_conf 429999999999999999997589987445897411--989----999851---01313--------------------- Q ss_pred EEEEE-EC--CCCCHHHHHHHHHHHHHHHHHCCEEEEEEEC----CHHHHHHHHHHHHHHHHCCCEEEEHHHHHHC Q ss_conf 84588-62--8999999999999999999871948999808----8788999999975688769189967774306 Q gi|254780558|r 323 VADLY-LD--DQVDRDKIREKLKGLEEIARTTGQAIGVAVA----FDESIEVISQWLQQEHVRDVSVVPLSCLAKL 391 (396) Q Consensus 323 ~~dvf-LD--~~~~~~~I~~qL~~l~~~Ar~~G~AI~igh~----~p~Ti~~L~~w~~~l~~~gi~lVpvS~l~~~ 391 (396) ++. .| ...+...+...+.+ ..++|.. .+.|- ...|+++|...++.|+++|+++|++++++.. T Consensus 119 --~~~~~Dw~~~~~~~~~~~~v~~----~~~~G~I-vL~Hd~~~~~~~t~~aL~~li~~lk~~Gy~fvtl~e~l~~ 187 (204) T d2c71a1 119 --GLTANDWIPSTTAEQRAAAVIN----GVRDGTI-ILLHDVQPEPHPTPEALDIIIPTLKSRGYEFVTLTELFTL 187 (204) T ss_dssp --CBCCSTTCTTSCHHHHHHHHHH----HCCTTBE-EEEESCCSSSCCHHHHHHHHHHHHHHTTCEECCHHHHHHH T ss_pred --CEECCCCCCCCCHHHHHHHHHH----CCCCCCE-EEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEHHHHHCC T ss_conf --3010226878889999999982----6799858-9981478865569999999999999889999888998607 No 8 >d2i5ia1 c.6.2.8 (A:2-262) Uncharacterized protein EF3048 {Enterococcus faecalis [TaxId: 1351]} Probab=96.67 E-value=0.019 Score=32.21 Aligned_cols=213 Identities=10% Similarity=0.001 Sum_probs=131.2 Q ss_pred EEEEEECCCCCCCHHHHHHHHHC---CCCCEEEEECCCCCHHHHHHHHHH--CCCCEEEECCCCCC-CCCCCCCC----- Q ss_conf 58999737787716889999837---935089870898768999999998--59929998176656-89877878----- Q gi|254780558|r 172 RIAIVVSGLGISQTGTQRAINLL---PANITLAFASNGNSLDRWMKEAKK--KGQEAILQIPMQAF-DESYNEDD----- 240 (396) Q Consensus 172 riAIVIddlG~~~~~~~~ai~~L---P~~vT~A~~P~~~~~~~~~~~Ar~--~G~EvllhlPMEp~-~~~~~~pG----- 240 (396) ||-|-.||+|++....+ +|.++ ..-=+.+++..++...+.++.++. .+-.|=||+=+=.. ..|-..+. T Consensus 4 ~lii~ADDfG~s~~vn~-~I~~~~~~G~its~s~mvn~p~~~~a~~~~~~~~~~~~vGlHl~LT~~~~~p~~~~~~~~~l 82 (261) T d2i5ia1 4 KLIINADDFGYTPAVTQ-GIIEAHKRGVVTSTTALPTSPYFLEAMESARISAPTLAIGVHLTLTLNQAKPILPREMVPSL 82 (261) T ss_dssp EEEEEEEEETSSHHHHH-HHHHHHHSSSCCEEEECTTSTTHHHHHHHHHHHCTTCEEEEEECSCCTTCCCSSCTTTSGGG T ss_pred EEEEECCCCCCCHHHHH-HHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCHHHCCCC T ss_conf 89995766879978889-99999987986167864389069999999987688876025677525778788982435554 Q ss_pred ---------CCCCCCCCCHHHHHHHHHHHHHHCCC----CEEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCC Q ss_conf ---------55446789989999999999985589----35980012300004989999999998506928997497632 Q gi|254780558|r 241 ---------SYTLKVTQTVQQLLNRLRYSLRRGTG----YFGVMNYRGAMLLSNKESAEVIFKEFAKRGLLFFDDGSSPR 307 (396) Q Consensus 241 ---------p~~L~~~~~~~~~~~~l~~~l~~~p~----~vGvnNhmGs~~t~~~~~m~~vl~~l~~rgL~flDs~Ts~~ 307 (396) ...+.-..+.++++.-++.-++++-. -.-|..||+.-.. .+.....+++..+++|+-+........ T Consensus 83 ~~~~g~f~~~~~~~~~~~~~~v~~Ei~aQi~~f~~~g~~P~hiDgH~h~h~~-~p~~~~~~~~la~~y~lp~r~~~~~~~ 161 (261) T d2i5ia1 83 VDEAGYFWHQSIFEEKVNLEEVYNEWDAQIISFMKSGRRPDHIDSHHNVHGK-NKKLLGVALALARKYQLPLRNASRSIE 161 (261) T ss_dssp BCTTSCBCCHHHHTTTCCHHHHHHHHHHHHHHHGGGSSCCSCEEEGGGGGGS-SHHHHHHHHHHHHHHTCCBCCCCCSGG T ss_pred CCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHCC-CHHHHHHHHHHHHHHCCCEEECCCCCC T ss_conf 4867750144776523899999999999999999809998612300122303-678999999999996998885421112 Q ss_pred CH-HHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCEEEEEEECCH--HHHH--------------HH-- Q ss_conf 26-78989870994698458862899999999999999999987194899980887--8899--------------99-- Q gi|254780558|r 308 NL-TRVLAPKLNLPYMVADLYLDDQVDRDKIREKLKGLEEIARTTGQAIGVAVAFD--ESIE--------------VI-- 368 (396) Q Consensus 308 Sv-a~~~A~~~gvp~~~~dvfLD~~~~~~~I~~qL~~l~~~Ar~~G~AI~igh~~p--~Ti~--------------~L-- 368 (396) .. .....+....+......|.+...+.+.+.+.|+.+. ....|....++||-- +.+. +| T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~eim~HPG~~d~~l~~~~~~~~~R~~E~~~L~s 239 (261) T d2i5ia1 162 TKDYLELYQDVRTPDEMLYQFYDKAISTETILQLLDMVV--CSEGEVFEINCHPAFIDTILQNQSGYCMPRIREVEILTS 239 (261) T ss_dssp GGGGGGGTTTSCCCSEEECCCSGGGCSHHHHHHHHHHHH--HSSCSEEEEEECCCCBCHHHHHHCSSCTHHHHHHHHHTC T ss_pred CCCHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH--HCCCCEEEEEECCCCCCHHHHHCCCCCCCHHHHHHHHCC T ss_conf 245578851788752103222356579999999999876--348983699960688986665268764315999999749 Q ss_pred HHHHHHHHHCCCEEEEHHHH Q ss_conf 99975688769189967774 Q gi|254780558|r 369 SQWLQQEHVRDVSVVPLSCL 388 (396) Q Consensus 369 ~~w~~~l~~~gi~lVpvS~l 388 (396) .++...+++.||+||.-.+| T Consensus 240 ~~~~~~l~~~~I~L~~~~~l 259 (261) T d2i5ia1 240 QEVKEAIEERGILLANYESL 259 (261) T ss_dssp HHHHHHHHHTTCEEECGGGG T ss_pred HHHHHHHHHCCCEEECHHHC T ss_conf 99999999879999617633 No 9 >d1z7aa1 c.6.2.6 (A:4-304) Hypothetical protein PA1517 {Pseudomonas aeruginosa [TaxId: 287]} Probab=96.65 E-value=0.0078 Score=34.69 Aligned_cols=184 Identities=12% Similarity=0.092 Sum_probs=110.2 Q ss_pred HHHHHHHHCCCCCEEEEECCC-CCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-- Q ss_conf 889999837935089870898-76899999999859929998176656898778785544678998999999999998-- Q gi|254780558|r 186 GTQRAINLLPANITLAFASNG-NSLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLKVTQTVQQLLNRLRYSLR-- 262 (396) Q Consensus 186 ~~~~ai~~LP~~vT~A~~P~~-~~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~~~~~~~~~~~l~~~l~-- 262 (396) .-.+.+.++-.+.||.+.-.. ..-.+.++...+.||||..|= |.. .....++.++.++.+..+++ T Consensus 82 Rll~ll~~~~i~aTff~~g~~ae~~P~~v~~i~~~GhEi~~HG------~~h------~~~~~l~~~~e~~~i~~~~~~l 149 (301) T d1z7aa1 82 RLLKLFKRRNVPLTVFAVAMAAQRNPEVIRAMVADGHEICSHG------YRW------IDYQYMDEAQEREHMLEAIRIL 149 (301) T ss_dssp HHHHHHHHTTCCCEEEECHHHHHHCHHHHHHHHHTTCEEEECC------SSS------SCCTTCCHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHCHHHHHHHHHCCCEEECCC------CCC------CCCCCCCHHHHHHHHHHHHHHH T ss_conf 8998999719985411439999978499999987073210374------323------2334478899999999999999 Q ss_pred -HCCCC--EEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCHHH--HHHH----HHCCCEE--EEEEEECC- Q ss_conf -55893--59800123000049899999999985069289974976322678--9898----7099469--84588628- Q gi|254780558|r 263 -RGTGY--FGVMNYRGAMLLSNKESAEVIFKEFAKRGLLFFDDGSSPRNLTR--VLAP----KLNLPYM--VADLYLDD- 330 (396) Q Consensus 263 -~~p~~--vGvnNhmGs~~t~~~~~m~~vl~~l~~rgL~flDs~Ts~~Sva~--~~A~----~~gvp~~--~~dvfLD~- 330 (396) ++.|. +|- ....++.+. . ...|++.|+.|.-|-..-.- -+ .+.. -.-||+. ..|.++-. T Consensus 150 ~~~tG~~p~G~---~~p~~~~~~-t----~~lL~e~Gf~Y~sd~~~dD~-Py~~~~~~~~~~~l~iP~~~~~~D~~~~~~ 220 (301) T d1z7aa1 150 TELTGQRPVGW---YTGRTGPNT-R----RLVMEEGGFLYDSDTYDDDL-PYWDPASTAEKPHLVIPYTLDTNDMRFTQV 220 (301) T ss_dssp HHHHSSCCCEE---CCSSCCTTH-H----HHHHHHCCCSEECCCCCCSS-CEECTTCCSSSCCEECCCCSSSBGGGGGST T ss_pred HHHCCCCCCCC---CCCCCCCCC-H----HHHHHHCCCEEECCCCCCCC-CCCEECCCCCCCEEEECCCCCCCHHHHHHC T ss_conf 97606785131---589998751-9----99998509779887878887-641124688887698325033451456520 Q ss_pred --CCCH----HHHHHHHHHHHHHHHHCCEEEEEE-ECC----HHHHHHHHHHHHHHHHC-CCEEEEHHHHHH Q ss_conf --9999----999999999999998719489998-088----78899999997568876-918996777430 Q gi|254780558|r 331 --QVDR----DKIREKLKGLEEIARTTGQAIGVA-VAF----DESIEVISQWLQQEHVR-DVSVVPLSCLAK 390 (396) Q Consensus 331 --~~~~----~~I~~qL~~l~~~Ar~~G~AI~ig-h~~----p~Ti~~L~~w~~~l~~~-gi~lVpvS~l~~ 390 (396) ..+. +.+..+|+.+.+-+...|..+.|+ ||+ |.-+.+|.+++..+.+. ||-+...+++.+ T Consensus 221 ~~~~~~~~~~~~~~d~fd~l~~e~~~~~~~~~l~lHP~i~G~P~Ri~~Le~~l~~i~~~~dVW~at~~eIA~ 292 (301) T d1z7aa1 221 QGFNNGEQFFQYLKDAFDVLYEEGATAPKMLSIGLHCRLIGRPARMAALERFIQYAQSHDKVWFARREDIAR 292 (301) T ss_dssp TCCSSHHHHHHHHHHHHHHHHHHTTTSCEEEEEEEETTTTTSHHHHHHHHHHHHHHHTSSSEEECCHHHHHH T ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEECCHHHHHH T ss_conf 798988999999999999999836888887999638753388899999999999997399989807999999 No 10 >d1v6ta_ c.6.2.5 (A:) Hypothetical protein PH0986 {Pyrococcus horikoshii [TaxId: 53953]} Probab=96.64 E-value=0.02 Score=32.07 Aligned_cols=195 Identities=16% Similarity=0.186 Sum_probs=131.9 Q ss_pred CCCCCCC----HHHHHHHHHCCCCCEEEEECCCC------CHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCC Q ss_conf 3778771----68899998379350898708987------6899999999859929998176656898778785544678 Q gi|254780558|r 178 SGLGISQ----TGTQRAINLLPANITLAFASNGN------SLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLKVT 247 (396) Q Consensus 178 ddlG~~~----~~~~~ai~~LP~~vT~A~~P~~~------~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~~ 247 (396) -|||.+. .+.+++|+ |+ ||-|=+.-+- .-++.++.|.+.|-.|=-|- +||+.+ |=+=-... T Consensus 7 ~DlGE~~g~~~~g~D~~lm--~~-issaNIACG~HAGD~~~m~~tv~lA~~~~V~IGAHP-----sypD~~-gFGRr~~~ 77 (254) T d1v6ta_ 7 SDLGESFGRYKLGLDEEVM--KY-ITSANVACGWHAGDPLVMRKTVRLAKENDVQVGAHP-----GYPDLM-GFGRRYMK 77 (254) T ss_dssp EEECCCBTTBCCSCHHHHT--TT-CSEEEEECSSSSCCHHHHHHHHHHHHHTTCEEEEEC-----CCSCTT-TTTCSCCC T ss_pred CCCCCCCCCCCCCCCHHHH--HH-HHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCC-----CCCCCC-CCCCCCCC T ss_conf 2279887887778818998--67-525888517456779999999999998299743799-----986733-36755466 Q ss_pred CCHHHHHHHHHHHHHHCCCC--------EEEEECCCCC---CCCCHHHHHHHHHHHHCC--CCEEEECCCCCCCHHHHHH Q ss_conf 99899999999999855893--------5980012300---004989999999998506--9289974976322678989 Q gi|254780558|r 248 QTVQQLLNRLRYSLRRGTGY--------FGVMNYRGAM---LLSNKESAEVIFKEFAKR--GLLFFDDGSSPRNLTRVLA 314 (396) Q Consensus 248 ~~~~~~~~~l~~~l~~~p~~--------vGvnNhmGs~---~t~~~~~m~~vl~~l~~r--gL~flDs~Ts~~Sva~~~A 314 (396) ++++++.+.+..-++.+-.. ..|--| |.. ...|+...+.+++.++.. +|.++ +-+.|...+.| T Consensus 78 ~s~~el~~~i~~Qi~al~~~a~~~g~~l~hVKpH-GALYN~a~~D~~lA~ai~~ai~~~~~~l~l~---~~~~s~~~~~A 153 (254) T d1v6ta_ 78 LTPEEARNYILYQVGALYAFAKAEGLELQHVKPH-GALYNAMVKEEDLARAVIEGILDFDKDLILV---TLSNSRVADIA 153 (254) T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTTCCEEEECCC-HHHHHHHHHCHHHHHHHHHHHHHHCTTCEEE---EETTCHHHHHH T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEH-HHHHHHHHCCHHHHHHHHHHHHHHCCCCCEE---ECCCCHHHHHH T ss_conf 7889999999999999999999859905798311-9998888538999999999999737675376---54883799999 Q ss_pred HHHCCCEEEEEEEECCC-----------------CCHHHHHHHHHHHHHHHHH------CCEEEE-----EE--ECCHHH Q ss_conf 87099469845886289-----------------9999999999999999987------194899-----98--088788 Q gi|254780558|r 315 PKLNLPYMVADLYLDDQ-----------------VDRDKIREKLKGLEEIART------TGQAIG-----VA--VAFDES 364 (396) Q Consensus 315 ~~~gvp~~~~dvfLD~~-----------------~~~~~I~~qL~~l~~~Ar~------~G~AI~-----ig--h~~p~T 364 (396) ++.|+++.. ..|.|-. .|++.+.+| +.+++++ .|.-|- || .-.|+. T Consensus 154 ~~~Gl~~~~-E~FADR~Y~~dG~Lv~R~~~gAvi~d~~~~~~q---v~~mv~~g~V~ti~G~~I~i~adTICVHGDtp~A 229 (254) T d1v6ta_ 154 EEMGLKVAH-EVFADRAYNPDGTLVPRGRPGAVIEDKEEIAER---VISMVKDGGIRAINGEWVDLKVDTICVHGDNPKA 229 (254) T ss_dssp HHHTCCEEE-EECTTBCBCTTSCBCC-----CBCCCHHHHHHH---HHHHHHHSEEECTTSCEEECCCSEEECCCSSHHH T ss_pred HHHCCCEEE-EEEEECCCCCCCCEEEECCCCCCCCCHHHHHHH---HHHHHHCCCEEECCCCEEECCCCEEEECCCCHHH T ss_conf 872776223-353143488999887602444435789999999---9999867988915898874367989979999789 Q ss_pred HHHHHHHHHHHHHCCCEEEEHHHHH Q ss_conf 9999999756887691899677743 Q gi|254780558|r 365 IEVISQWLQQEHVRDVSVVPLSCLA 389 (396) Q Consensus 365 i~~L~~w~~~l~~~gi~lVpvS~l~ 389 (396) ++.++..-..|++.||++.|+++++ T Consensus 230 v~~a~~ir~~L~~~gi~I~pl~~~~ 254 (254) T d1v6ta_ 230 VEITSYIRKVLEEEGVKIVPMKEFI 254 (254) T ss_dssp HHHHHHHHHHHHHTTCEECCGGGTC T ss_pred HHHHHHHHHHHHHCCCEEEEHHHCC T ss_conf 9999999999998899996568809 No 11 >d1xw8a_ c.6.2.5 (A:) Hypothetical protein YbgL {Escherichia coli [TaxId: 562]} Probab=95.12 E-value=0.086 Score=28.11 Aligned_cols=193 Identities=12% Similarity=0.091 Sum_probs=128.1 Q ss_pred CCCCCCCHHHHHHHHHCCCCCEEEEECCC---C---CHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHH Q ss_conf 37787716889999837935089870898---7---68999999998599299981766568987787855446789989 Q gi|254780558|r 178 SGLGISQTGTQRAINLLPANITLAFASNG---N---SLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLKVTQTVQ 251 (396) Q Consensus 178 ddlG~~~~~~~~ai~~LP~~vT~A~~P~~---~---~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~~~~~~ 251 (396) -|||.+. +..++|+.+ ||-|=+.-+ - .-++.++.|.+.|-.|=-|- +||+.+ |=+=-...++++ T Consensus 7 ~DlGE~~-g~D~~lm~~---i~saNIACG~HaGd~~~m~~tv~lA~~~~V~iGAHP-----sypD~~-gFGRr~~~~s~~ 76 (247) T d1xw8a_ 7 ADLGEGC-ASDAELLTL---VSSANIACGFHAGDAQIMQACVREAIKNGVAIGAHP-----SFPDRE-NFGRSAMQLPPE 76 (247) T ss_dssp EEESSSC-SCHHHHHHH---CSEEEEECSSSSCCHHHHHHHHHHHHHHTCEEEEEC-----CCC--------CCCCCCHH T ss_pred CCCCCCC-CCHHHHHHH---HHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCC-----CCCCHH-CCCCCCCCCCHH T ss_conf 4468886-888999867---636888606456779999999999998399743789-----988610-067556889999 Q ss_pred HHHHHHHHHHHHCCCC--------EEEEECCCCC---CCCCHHHHHHHHHHHHCC--CCEEEECCCCCCCHHHHHHHHHC Q ss_conf 9999999999855893--------5980012300---004989999999998506--92899749763226789898709 Q gi|254780558|r 252 QLLNRLRYSLRRGTGY--------FGVMNYRGAM---LLSNKESAEVIFKEFAKR--GLLFFDDGSSPRNLTRVLAPKLN 318 (396) Q Consensus 252 ~~~~~l~~~l~~~p~~--------vGvnNhmGs~---~t~~~~~m~~vl~~l~~r--gL~flDs~Ts~~Sva~~~A~~~g 318 (396) |+.+.+.+-++.+-.. ..|--| |.. ...|+...+.+++.++.. +|.++ ..+.|...+.|++.| T Consensus 77 el~~~v~~Qi~al~~~~~~~g~~l~hvKpH-GALYn~~~~d~~lA~~i~~ai~~~~~~l~l~---~~~~s~~~~~A~~~G 152 (247) T d1xw8a_ 77 TVYAQTLYQIGALATIARAQGGVMRHVKPH-GMLYNQAAKEAQLADAIARAVYACDPALILV---GLAGSELIRAGKQYG 152 (247) T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCEEEECCC-HHHHHHHTTCHHHHHHHHHHHHHHCTTCEEE---EETTSHHHHHHHHTT T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEEECHH-HHHHHHHCCCHHHHHHHHHHHHHHCCCHHHC---CCCCCHHHHHHHHCC T ss_conf 999999999999999999859824563344-9998775046899999999999848324430---478859999998749 Q ss_pred CCEEEEEEEECCCCCH----------H----HHHHHHHHHHHHHHHC------CEEEE-----EE--ECCHHHHHHHHHH Q ss_conf 9469845886289999----------9----9999999999999871------94899-----98--0887889999999 Q gi|254780558|r 319 LPYMVADLYLDDQVDR----------D----KIREKLKGLEEIARTT------GQAIG-----VA--VAFDESIEVISQW 371 (396) Q Consensus 319 vp~~~~dvfLD~~~~~----------~----~I~~qL~~l~~~Ar~~------G~AI~-----ig--h~~p~Ti~~L~~w 371 (396) +++.. ..|.|-.-+. . .....+++..++++.+ |.-|- || .-.|..++.++.. T Consensus 153 l~~~~-E~FADR~Y~~dG~Lv~R~~~gAvi~d~~~~~~qv~~m~~~g~V~ti~G~~I~l~adTICVHGDtp~Av~~ak~I 231 (247) T d1xw8a_ 153 LTTRE-EVFADRGYQADGSLVPRSQSGALIENEEQALAQTLEMVQHGRVKSITGEWATVAAQTVCLHGDGEHALAFARRL 231 (247) T ss_dssp CCEEE-EECTTSCBCTTSSBCCTTTCC-----CTTHHHHHHHHHHHSEEECTTSCEEECCCCEEECCCCC-CCHHHHHHH T ss_pred CCEEE-EEECCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHCCCEECCCCCEECCCCCEEEECCCCHHHHHHHHHH T ss_conf 96423-33102433776341211355456689799999999999779878678998107889798799997899999999 Q ss_pred HHHHHHCCCEEEEH Q ss_conf 75688769189967 Q gi|254780558|r 372 LQQEHVRDVSVVPL 385 (396) Q Consensus 372 ~~~l~~~gi~lVpv 385 (396) -..|++.||++.|+ T Consensus 232 r~~L~~~gI~I~~~ 245 (247) T d1xw8a_ 232 RSAFAEKGIVVAAL 245 (247) T ss_dssp HHHC----CCBCCC T ss_pred HHHHHHCCCEEECC T ss_conf 99999889989518 No 12 >d2dfaa1 c.6.2.5 (A:1-250) Hypothetical protein TTHB195 {Thermus thermophilus [TaxId: 274]} Probab=94.92 E-value=0.11 Score=27.50 Aligned_cols=191 Identities=16% Similarity=0.136 Sum_probs=124.2 Q ss_pred CCCCCCC----HHHHHHHHHCCCCCEEEEECCC---C---CHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCC Q ss_conf 3778771----6889999837935089870898---7---6899999999859929998176656898778785544678 Q gi|254780558|r 178 SGLGISQ----TGTQRAINLLPANITLAFASNG---N---SLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLKVT 247 (396) Q Consensus 178 ddlG~~~----~~~~~ai~~LP~~vT~A~~P~~---~---~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~~ 247 (396) -|||.+. .+.+++|+ |+ ||-|=+.-+ - .-++.++.|++.|-.|=-|- +||+.+ |=+=-... T Consensus 7 ~DlGE~~g~~~~g~D~~lm--~~-i~saNIACG~HaGD~~~m~~tv~lA~~~~V~IGAHP-----sypD~~-gFGRr~~~ 77 (250) T d2dfaa1 7 ADAGESYGAFAYGHDREIF--PL-VSSANLACGFHGGSPGRILEAVRLAKAHGVAVGAHP-----GFPDLV-GFGRREMA 77 (250) T ss_dssp EEECCCBTTBCCSCHHHHT--TT-CSEEEEECSSSSCCHHHHHHHHHHHHHTTCEEEEEC-----CCSCTT-TTTCSCCC T ss_pred CCCCCCCCCCCCCCHHHHH--HH-HHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCC-----CCCCHH-HCCCCCCC T ss_conf 0168887887778809998--67-635777517446779999999999998298401688-----976243-35887678 Q ss_pred CCHHHHHHHHHHHHHHCCCC---EEE-EECC---CC---CCCCCHHHHHHHHHHHHCC--CCEEEECCCCCCCHHHHHHH Q ss_conf 99899999999999855893---598-0012---30---0004989999999998506--92899749763226789898 Q gi|254780558|r 248 QTVQQLLNRLRYSLRRGTGY---FGV-MNYR---GA---MLLSNKESAEVIFKEFAKR--GLLFFDDGSSPRNLTRVLAP 315 (396) Q Consensus 248 ~~~~~~~~~l~~~l~~~p~~---vGv-nNhm---Gs---~~t~~~~~m~~vl~~l~~r--gL~flDs~Ts~~Sva~~~A~ 315 (396) ++++++.+.+..-+..+-.. .|+ .+|. |. ....|+...+.+++.++.. +|.++ +-+.|.-.++|+ T Consensus 78 ~s~~el~~~i~~Qi~al~~~a~~~g~~l~hVKpHGALYn~~~~d~~lA~~i~~ai~~~~~~l~l~---~~~~s~~~~~a~ 154 (250) T d2dfaa1 78 LSPEEVYADVLYQIGALSAFLKAEGLPLHHVKPHGALYLKACRDRETARAIALAVKAFDPGLPLV---VLPGTVYEEEAR 154 (250) T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTTCCCCCBCCCHHHHHHHHHCHHHHHHHHHHHHHHCTTCCEE---ECTTSHHHHHHH T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEE---ECCCHHHHHHHH T ss_conf 99899999999999999999998399414532018876456508899999999998618885388---507515787776 Q ss_pred HHCCCEEEEEEEECCCC-----------------CHHHHHHHHHHHHHHHHHC------CE-------EEEEEECCHHHH Q ss_conf 70994698458862899-----------------9999999999999999871------94-------899980887889 Q gi|254780558|r 316 KLNLPYMVADLYLDDQV-----------------DRDKIREKLKGLEEIARTT------GQ-------AIGVAVAFDESI 365 (396) Q Consensus 316 ~~gvp~~~~dvfLD~~~-----------------~~~~I~~qL~~l~~~Ar~~------G~-------AI~igh~~p~Ti 365 (396) +.|+++.. ..|.|..- +++.+ +++..++++++ |. -|-|-.-.|+.+ T Consensus 155 ~~Gl~~~~-E~FADR~Y~~dG~LvpR~~~gAvi~d~~~~---~~qv~~~~~~~~V~t~~G~~i~i~adTICVHgDtp~Av 230 (250) T d2dfaa1 155 KAGLRVVL-EAFPERAYLRSGQLAPRSMPGSWITDPEEA---ARRALRMVLEGKVEALDGGEVAVRADTLCIHGDNPNAP 230 (250) T ss_dssp HTTCCEEE-EECTTBCBCTTSSBCCTTSTTCBCCCHHHH---HHHHHHHHHTSEEEBTTSSEEECCCSEEEEC---CCHH T ss_pred HCCCCEEE-EEEECCCCCCCCCEEEECCCCCCCCCHHHH---HHHHHHHHHCCCEEECCCCEEECCCCEEEECCCCHHHH T ss_conf 46983566-774044488999789852676535786999---99999999789879068988525689899789997799 Q ss_pred HHHHHHHHHHHHCCCEEEE Q ss_conf 9999997568876918996 Q gi|254780558|r 366 EVISQWLQQEHVRDVSVVP 384 (396) Q Consensus 366 ~~L~~w~~~l~~~gi~lVp 384 (396) +.++..-..|++.||++.| T Consensus 231 ~~ak~ir~~L~~~gi~I~~ 249 (250) T d2dfaa1 231 EVARAVREALEQAGVEVRA 249 (250) T ss_dssp HHHHHHHHHHHTTTCEECC T ss_pred HHHHHHHHHHHHCCCEEEC T ss_conf 9999999999988696816 No 13 >d1i60a_ c.1.15.4 (A:) Hypothetical protein IolI {Bacillus subtilis [TaxId: 1423]} Probab=72.98 E-value=2.5 Score=18.88 Aligned_cols=81 Identities=10% Similarity=0.072 Sum_probs=37.6 Q ss_pred CCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-------HCCCCEEEE--ECCCCC Q ss_conf 76899999999859929998176656898778785544678998999999999998-------558935980--012300 Q gi|254780558|r 207 NSLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLKVTQTVQQLLNRLRYSLR-------RGTGYFGVM--NYRGAM 277 (396) Q Consensus 207 ~~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~~~~~~~~~~~l~~~l~-------~~p~~vGvn--NhmGs~ 277 (396) .+.+++++.|+.-|-.+++..|... ...-+.++..+++...|. +..=.+++= ||+++. T Consensus 84 ~~~~~~i~~a~~lG~~~i~~~~~~~-------------~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~~~~~~~ 150 (278) T d1i60a_ 84 TEFKGMMETCKTLGVKYVVAVPLVT-------------EQKIVKEEIKKSSVDVLTELSDIAEPYGVKIALEFVGHPQCT 150 (278) T ss_dssp HHHHHHHHHHHHHTCCEEEEECCBC-------------SSCCCHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCCTTBS T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCC-------------CCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCC T ss_conf 9999999999974998455666668-------------888777999999999999999999973982464312222324 Q ss_pred CCCCHHHHHHHHHHHHCCCCEEEE Q ss_conf 004989999999998506928997 Q gi|254780558|r 278 LLSNKESAEVIFKEFAKRGLLFFD 301 (396) Q Consensus 278 ~t~~~~~m~~vl~~l~~rgL~flD 301 (396) + .+...+..+++.+...+++++= T Consensus 151 ~-~~~~~~~~ll~~v~~~~vg~~~ 173 (278) T d1i60a_ 151 V-NTFEQAYEIVNTVNRDNVGLVL 173 (278) T ss_dssp S-CSHHHHHHHHHHHCCTTEEEEE T ss_pred C-CCHHHHHHHHHHHHCCCCCCCC T ss_conf 6-9999999999875033431345 No 14 >d2chra1 c.1.11.2 (A:127-370) Chlormuconate cycloisomerase {Alcaligenes eutrophus [TaxId: 106590]} Probab=72.58 E-value=2.5 Score=18.83 Aligned_cols=139 Identities=12% Similarity=0.067 Sum_probs=85.1 Q ss_pred CHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHH Q ss_conf 68999999998599299981766568987787855446789989999999999985589359800123000049899999 Q gi|254780558|r 208 SLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLKVTQTVQQLLNRLRYSLRRGTGYFGVMNYRGAMLLSNKESAEV 287 (396) Q Consensus 208 ~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~~~~~~~~~~~l~~~l~~~p~~vGvnNhmGs~~t~~~~~m~~ 287 (396) ...++++...+.|+..+= + .-| ..+.++...+++...+.+..-+.+.=-....++- ..++ . T Consensus 20 ~~~~~~~~~~~~Gf~~~K-i----------KvG------~~~~~~D~~~v~~ir~~~g~~~~l~vDaN~~~~~-~~A~-~ 80 (244) T d2chra1 20 DLDSAVEMIERRRHNRFK-V----------KLG------FRSPQDDLIHMEALSNSLGSKAYLRVDVNQAWDE-QVAS-V 80 (244) T ss_dssp HHHHHHHHHHTTSCCEEE-E----------ECS------SSCHHHHHHHHHHHHHHTTTTSEEEEECTTCCCT-HHHH-H T ss_pred HHHHHHHHHHHCCCCEEE-E----------ECC------CCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCH-HHHH-H T ss_conf 999999999957999799-9----------839------9998999999999998467886699918988505-7788-8 Q ss_pred HHHHHHCCCCEEEECCCCCCCH--HHHHHHHHCCCEEEEEEEEC--------------C-CCCHHHH--HHHHHHHHHHH Q ss_conf 9999850692899749763226--78989870994698458862--------------8-9999999--99999999999 Q gi|254780558|r 288 IFKEFAKRGLLFFDDGSSPRNL--TRVLAPKLNLPYMVADLYLD--------------D-QVDRDKI--REKLKGLEEIA 348 (396) Q Consensus 288 vl~~l~~rgL~flDs~Ts~~Sv--a~~~A~~~gvp~~~~dvfLD--------------~-~~~~~~I--~~qL~~l~~~A 348 (396) +++.|.+.+++|+-.-..+... -.++.+..++|.+.-.-+.+ - ..+...+ ...+.++..+| T Consensus 81 ~~~~l~~~~i~~iEeP~~~~d~~~~~~l~~~~~ipia~~E~~~~~~~~~~~i~~~~~d~v~~d~~~~GGit~~~~i~~~a 160 (244) T d2chra1 81 YIPELEALGVELIEQPVGRENTQALRRLSDNNRVAIMADESLSTLASAFDLARDRSVDVFSLKLCNMGGVSATQKIAAVA 160 (244) T ss_dssp HHHHHHTTTCCEEECCSCSSCHHHHHHHHHHCSSEEEESSSCCSHHHHHHHHTTTCCSEECCCHHHHTSHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHCCEEEEEEECCCCCCCHHHHHHHHHHH T ss_conf 89887540688872012002411334414220356640344432101333310122578731234454568899999999 Q ss_pred HHCCEEEEEEECCHHHH Q ss_conf 87194899980887889 Q gi|254780558|r 349 RTTGQAIGVAVAFDESI 365 (396) Q Consensus 349 r~~G~AI~igh~~p~Ti 365 (396) +.+|.-+.++|.+...| T Consensus 161 ~~~gi~~~~~~~~~~~i 177 (244) T d2chra1 161 EASGIASYGGTMLDSTI 177 (244) T ss_dssp HHHTCEECCCCCSCCHH T ss_pred HHCCCCEEECCCCCCCC T ss_conf 97599745213432211 No 15 >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} Probab=57.88 E-value=4.9 Score=17.04 Aligned_cols=100 Identities=15% Similarity=0.107 Sum_probs=62.6 Q ss_pred CCCCCCHHHHHHHHHHHHHHCC--------CCEEEEECCCCCC-CCCHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHH Q ss_conf 4678998999999999998558--------9359800123000-049899999999985069289974976322678989 Q gi|254780558|r 244 LKVTQTVQQLLNRLRYSLRRGT--------GYFGVMNYRGAML-LSNKESAEVIFKEFAKRGLLFFDDGSSPRNLTRVLA 314 (396) Q Consensus 244 L~~~~~~~~~~~~l~~~l~~~p--------~~vGvnNhmGs~~-t~~~~~m~~vl~~l~~rgL~flDs~Ts~~Sva~~~A 314 (396) +...++.+++..|+........ ....+.+..++.. ......+..+......-.+.++|+.+...+ T Consensus 73 ~~~E~~~~~~~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvviD~l~~~~~------ 146 (274) T d1nlfa_ 73 LPAEDPPTAIHHRLHALGAHLSAEERQAVADGLLIQPLIGSLPNIMAPEWFDGLKRAAEGRRLMVLDTLRRFHI------ 146 (274) T ss_dssp EESSSCHHHHHHHHHHHHTTSCHHHHHHHHHHEEECCCTTSCCCTTSHHHHHHHHHHHTTCSEEEEECGGGGCC------ T ss_pred EECCCHHHHHHHHHHHHHHCCCHHHHHCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEECCCHHHHCC------ T ss_conf 85123499999999998623686665312333232145674203578999999887526765896281354226------ Q ss_pred HHHCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCEEEE-EEECCHH Q ss_conf 870994698458862899999999999999999987194899-9808878 Q gi|254780558|r 315 PKLNLPYMVADLYLDDQVDRDKIREKLKGLEEIARTTGQAIG-VAVAFDE 363 (396) Q Consensus 315 ~~~gvp~~~~dvfLD~~~~~~~I~~qL~~l~~~Ar~~G~AI~-igh~~p~ 363 (396) .++.+...+...+.++..+|++.|.+|. +.|.... T Consensus 147 --------------~~~~~~~~~~~~~~~l~~la~~~~~~vi~v~H~~K~ 182 (274) T d1nlfa_ 147 --------------EEENASGPMAQVIGRMEAIAADTGCSIVFLHHASKG 182 (274) T ss_dssp --------------SCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC--- T ss_pred --------------CCCCCHHHHHHHHHHHHHHHHCCCCCEEHHHHCCCC T ss_conf --------------652322568999988777764479754013100555 No 16 >d1muca1 c.1.11.2 (A:131-372) Muconate-lactonizing enzyme {Pseudomonas putida [TaxId: 303]} Probab=54.50 E-value=5.5 Score=16.69 Aligned_cols=149 Identities=15% Similarity=0.081 Sum_probs=80.5 Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHHCCCCEE-EECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEE Q ss_conf 7935089870898768999999998599299-981766568987787855446789989999999999985589359800 Q gi|254780558|r 194 LPANITLAFASNGNSLDRWMKEAKKKGQEAI-LQIPMQAFDESYNEDDSYTLKVTQTVQQLLNRLRYSLRRGTGYFGVMN 272 (396) Q Consensus 194 LP~~vT~A~~P~~~~~~~~~~~Ar~~G~Evl-lhlPMEp~~~~~~~pGp~~L~~~~~~~~~~~~l~~~l~~~p~~vGvnN 272 (396) +|.-.|++.--......+..+...+.||-++ +.+ | ..+.++-.+++....+.++.=+-+.= T Consensus 6 ipv~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKv------------G------~~~~~~Di~~i~~ir~~~g~~~~l~v 67 (242) T d1muca1 6 LEVAWTLASGDTARDIAEARHMLEIRRHRVFKLKI------------G------ANPVEQDLKHVVTIKRELGDSASVRV 67 (242) T ss_dssp EEBCEEECCSCHHHHHHHHHHHHHTTSCSEEEEEC------------S------SSCHHHHHHHHHHHHHHHGGGSEEEE T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEE------------C------CCCHHHHHHHHHHHHHHHCCCCEEEE T ss_conf 78889961799199999999999978997799997------------9------99979999999999998589987987 Q ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCHH--HHHHHHHCCCEEEEEEEECCC---------------CCHH Q ss_conf 12300004989999999998506928997497632267--898987099469845886289---------------9999 Q gi|254780558|r 273 YRGAMLLSNKESAEVIFKEFAKRGLLFFDDGSSPRNLT--RVLAPKLNLPYMVADLYLDDQ---------------VDRD 335 (396) Q Consensus 273 hmGs~~t~~~~~m~~vl~~l~~rgL~flDs~Ts~~Sva--~~~A~~~gvp~~~~dvfLD~~---------------~~~~ 335 (396) -...+++ ......+++.|.+.|++|+-.-....... ..+.+..++|.+.-.-+.+.. .+.. T Consensus 68 DaN~~~~--~~~A~~~~~~l~~~~i~~iEeP~~~~d~~~~~~L~~~~~~pIa~~E~~~~~~~~~~~i~~~~~d~~~~d~~ 145 (242) T d1muca1 68 DVNQYWD--ESQAIRACQVLGDNGIDLIEQPISRINRGGQVRLNQRTPAPIMADESIESVEDAFSLAADGAASIFALKIA 145 (242) T ss_dssp ECTTCBC--HHHHHHHHHHHHHTTCCCEECCBCTTCHHHHHHHHHHCSSCEEESTTCSSHHHHHHHHHHTCCSEEEECHH T ss_pred ECCCCCC--HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCHHHHHHCCCCCCCCCCCC T ss_conf 4697886--78889988886432587760640000144566664312202321343200122133332021222355533 Q ss_pred HH--HHHHHHHHHHHHHCCEEEEEEECCH Q ss_conf 99--9999999999987194899980887 Q gi|254780558|r 336 KI--REKLKGLEEIARTTGQAIGVAVAFD 362 (396) Q Consensus 336 ~I--~~qL~~l~~~Ar~~G~AI~igh~~p 362 (396) .+ ...+.++..+|+++|.-+.+++... T Consensus 146 ~~GGit~~~~i~~~A~~~gi~~~~~~~~~ 174 (242) T d1muca1 146 KNGGPRAVLRTAQIAEAAGIGLYGGTMLE 174 (242) T ss_dssp HHTSHHHHHHHHHHHHHHTCEEEECCSSC T ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCCC T ss_conf 21027899888889985798724566634 No 17 >d1qgoa_ c.92.1.2 (A:) Cobalt chelatase CbiK {Salmonella typhimurium [TaxId: 90371]} Probab=54.47 E-value=5.5 Score=16.69 Aligned_cols=186 Identities=14% Similarity=0.234 Sum_probs=106.1 Q ss_pred EEEEEECCCCCCCHHHHH-HHH--------HCC-CCCEEEEE-------------CCCCCHHHHHHHHHHCCCCEEEECC Q ss_conf 589997377877168899-998--------379-35089870-------------8987689999999985992999817 Q gi|254780558|r 172 RIAIVVSGLGISQTGTQR-AIN--------LLP-ANITLAFA-------------SNGNSLDRWMKEAKKKGQEAILQIP 228 (396) Q Consensus 172 riAIVIddlG~~~~~~~~-ai~--------~LP-~~vT~A~~-------------P~~~~~~~~~~~Ar~~G~EvllhlP 228 (396) |-||++-.+|-+...+.+ +|. .+| .+|-+||+ -..|+..+..+..+++|++-++=+| T Consensus 1 k~aillv~fGs~~~e~~~~~i~~i~~~v~~~~Pd~~V~~afts~~~~~~~~~~~~~~~p~~~eal~~l~~~G~~~ivV~P 80 (257) T d1qgoa_ 1 KKALLVVSFGTSYHDTCEKNIVACERDLAASCPDRDLFRAFTSGMIIRKLRQRDGIDIDTPLQALQKLAAQGYQDVAIQS 80 (257) T ss_dssp CEEEEEEECCCSCHHHHHHHHHHHHHHHHHTCTTSEEEEEECCHHHHHHHHHHHCCCCCCHHHHHHHHHHTTCCEEEEEE T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEEEE T ss_conf 93899995899965669999999999999988899188542105899988762487789999999999867998799986 Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCC--------CCEEE Q ss_conf 6656898778785544678998999999999998558935980012300004989999999998506--------92899 Q gi|254780558|r 229 MQAFDESYNEDDSYTLKVTQTVQQLLNRLRYSLRRGTGYFGVMNYRGAMLLSNKESAEVIFKEFAKR--------GLLFF 300 (396) Q Consensus 229 MEp~~~~~~~pGp~~L~~~~~~~~~~~~l~~~l~~~p~~vGvnNhmGs~~t~~~~~m~~vl~~l~~r--------gL~fl 300 (396) += |..+..-+++...+...-..++.. ++|.-+..+...+..+++.+.+. .+.|+ T Consensus 81 l~-------------l~~G~~~~di~~~i~~~~~~~~~i-----~~~~~~l~~~~~~~~l~~~l~~~~~~~~~~~~lllv 142 (257) T d1qgoa_ 81 LH-------------IINGDEYEKIVREVQLLRPLFTRL-----TLGVPLLSSHNDYVQLMQALRQQMPSLRQTEKVVFM 142 (257) T ss_dssp CC-------------SBCSHHHHHHHHHHHHHGGGSSEE-----EECCCSBSSHHHHHHHHHHHHTTCCCCCTTEEEEEE T ss_pred CC-------------CCCCCHHHHHHHHHHHHHHHCCCE-----EEECCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEE T ss_conf 24-------------425516999999999867548926-----983777899799999999999843567888589999 Q ss_pred ECCCCCCCHHH-----HHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCE-EEEEEECC---HH--HHHHH- Q ss_conf 74976322678-----989870994698458862899999999999999999987194-89998088---78--89999- Q gi|254780558|r 301 DDGSSPRNLTR-----VLAPKLNLPYMVADLYLDDQVDRDKIREKLKGLEEIARTTGQ-AIGVAVAF---DE--SIEVI- 368 (396) Q Consensus 301 Ds~Ts~~Sva~-----~~A~~~gvp~~~~dvfLD~~~~~~~I~~qL~~l~~~Ar~~G~-AI~igh~~---p~--Ti~~L- 368 (396) .-++...+... ....+.+-+... -++..+++.+...++|.+ +|. -|.+. || +. +..-| T Consensus 143 gHGs~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~P~~~~~l~~l~~-------~g~~~vvv~-P~fl~~G~H~~~Di~ 212 (257) T d1qgoa_ 143 GHGASHHAFAAYACLDHMMTAQRFPARV--GAVESYPEVDILIDSLRD-------EGVTGVHLM-PLMLVAGDHAINDMA 212 (257) T ss_dssp ECCCSHHHHHHHHHHHHHHHHHTCSEEE--EETTSSSCHHHHHHHHHH-------HTCCEEEEE-ECSSSCCHHHHTTTT T ss_pred ECCCCCHHHHHHHHHHHHHHHCCCCEEE--EEEECCCCHHHHHHHHHH-------CCCCEEEEE-EHHHHCCCHHHHHHH T ss_conf 4798816689999999999964898279--997359987899999986-------499879998-517833622665344 Q ss_pred ----HHHHHHHHHCCCEEEEH Q ss_conf ----99975688769189967 Q gi|254780558|r 369 ----SQWLQQEHVRDVSVVPL 385 (396) Q Consensus 369 ----~~w~~~l~~~gi~lVpv 385 (396) ..|-..+++.|++..++ T Consensus 213 ~~~~~s~~~~l~~~g~~v~~~ 233 (257) T d1qgoa_ 213 SDDGDSWKMRFNAAGIPATPW 233 (257) T ss_dssp SSSTTSHHHHHHHTTCCEEEC T ss_pred HHHHHHHHHHHHHCCCEEEEE T ss_conf 566689998778639745231 No 18 >d1nu5a1 c.1.11.2 (A:127-369) Chlormuconate cycloisomerase {Pseudomonas sp. p51 [TaxId: 65067]} Probab=53.90 E-value=5.7 Score=16.63 Aligned_cols=142 Identities=8% Similarity=0.066 Sum_probs=83.2 Q ss_pred HHHHHHHHCCCCEE-EECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHH Q ss_conf 99999998599299-98176656898778785544678998999999999998558935980012300004989999999 Q gi|254780558|r 211 RWMKEAKKKGQEAI-LQIPMQAFDESYNEDDSYTLKVTQTVQQLLNRLRYSLRRGTGYFGVMNYRGAMLLSNKESAEVIF 289 (396) Q Consensus 211 ~~~~~Ar~~G~Evl-lhlPMEp~~~~~~~pGp~~L~~~~~~~~~~~~l~~~l~~~p~~vGvnNhmGs~~t~~~~~m~~vl 289 (396) +..+..++.|+..+ +++ | ..+.++-.++++...+.+..-+.+.=-...+++ ......++ T Consensus 23 e~~~~~~~~G~~~~KiKv------------G------~~~~~~Di~~v~~ir~~~g~~~~l~vDaN~~~~--~~~A~~~~ 82 (243) T d1nu5a1 23 SALEMIETRRHNRFKVKL------------G------ARTPAQDLEHIRSIVKAVGDRASVRVDVNQGWD--EQTASIWI 82 (243) T ss_dssp HHHHHHHTTSCSEEEEEC------------S------SSCHHHHHHHHHHHHHHHGGGCEEEEECTTCCC--HHHHHHHH T ss_pred HHHHHHHHCCCCEEEEEE------------C------CCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCC--CHHHHHHH T ss_conf 999999967999799992------------9------999799999999999984866665887788760--11588888 Q ss_pred HHHHCCCCEEEECCCCCCCHH--HHHHHHHCCCEEEEEEEEC--------------CC-CCHHHH--HHHHHHHHHHHHH Q ss_conf 998506928997497632267--8989870994698458862--------------89-999999--9999999999987 Q gi|254780558|r 290 KEFAKRGLLFFDDGSSPRNLT--RVLAPKLNLPYMVADLYLD--------------DQ-VDRDKI--REKLKGLEEIART 350 (396) Q Consensus 290 ~~l~~rgL~flDs~Ts~~Sva--~~~A~~~gvp~~~~dvfLD--------------~~-~~~~~I--~~qL~~l~~~Ar~ 350 (396) +.|.+.+++|+-.-....... .++.+..++|.+.-.-+.+ -. .+...+ .....+...+|+. T Consensus 83 ~~l~~~~~~~iEeP~~~~~~~~~~~l~~~~~ipIa~gE~~~~~~~~~~~i~~~~~d~~~~d~~~~GGit~~~~i~~~a~~ 162 (243) T d1nu5a1 83 PRLEEAGVELVEQPVPRANFGALRRLTEQNGVAILADESLSSLSSAFELARDHAVDAFSLKLCNMGGIANTLKVAAVAEA 162 (243) T ss_dssp HHHHHHTCCEEECCSCTTCHHHHHHHHHHCSSEEEESTTCCSHHHHHHHHHTTCCSEEEECHHHHTSHHHHHHHHHHHHH T ss_pred HHHCCHHHHHHHHHHHHCCCCCCCCCHHCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH T ss_conf 87430046655334321011221100000011101223332100011102445455322121246656799999999998 Q ss_pred CCEEEEEEECC--HHHHHHHHHHH Q ss_conf 19489998088--78899999997 Q gi|254780558|r 351 TGQAIGVAVAF--DESIEVISQWL 372 (396) Q Consensus 351 ~G~AI~igh~~--p~Ti~~L~~w~ 372 (396) +|.-++++|.+ +.++.+..... T Consensus 163 ~gi~~~~~~~~~s~i~~~a~~h~~ 186 (243) T d1nu5a1 163 AGISSYGGTMLDSTVGTAAALHVY 186 (243) T ss_dssp HTCEEEECCSSCCHHHHHHHHHHH T ss_pred CCCCCCCCCCCCHHHHHHHHHHHH T ss_conf 599743340100025589999999 No 19 >d1byra_ d.136.1.1 (A:) Nuclease Nuc {Salmonella typhimurium [TaxId: 90371]} Probab=45.01 E-value=7.8 Score=15.76 Aligned_cols=65 Identities=12% Similarity=0.168 Sum_probs=48.2 Q ss_pred CCCEEEEECCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC Q ss_conf 35089870898768999999998599299981766568987787855446789989999999999985589359800123 Q gi|254780558|r 196 ANITLAFASNGNSLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLKVTQTVQQLLNRLRYSLRRGTGYFGVMNYRG 275 (396) Q Consensus 196 ~~vT~A~~P~~~~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~~~~~~~~~~~l~~~l~~~p~~vGvnNhmG 275 (396) +.|+..|.|.+...+...+..+++.++|.+.++ ..++.++.+.|..+..+--..--+.+..+ T Consensus 2 ~~v~v~fsp~~~~~~~i~~~I~~A~~~I~I~~~------------------~~~~~~i~~aL~~a~~rGV~Vril~~~~~ 63 (152) T d1byra_ 2 PSVQVGYSPEGSARVLVLSAIDSAKTSIRMMAY------------------SFTAPDIMKALVAAKKRGVDVKIVIDERG 63 (152) T ss_dssp CEEEEEEETTTHHHHHHHHHHHHCSSEEEEEES------------------SBCCHHHHHHHHHHHHTTCEEEEEEESTT T ss_pred CCEEEEECCCCCHHHHHHHHHHHCCCEEEEEEE------------------EECCHHHHHHHHHHHHCCCEEEEEEEEEC T ss_conf 965899899860999999999848869999997------------------53498999999999864985999997302 Q ss_pred CCC Q ss_conf 000 Q gi|254780558|r 276 AML 278 (396) Q Consensus 276 s~~ 278 (396) ... T Consensus 64 ~~~ 66 (152) T d1byra_ 64 NTG 66 (152) T ss_dssp CCS T ss_pred CCC T ss_conf 344 No 20 >d2pjua1 c.92.3.1 (A:11-196) Propionate catabolism operon regulatory protein PrpR {Escherichia coli [TaxId: 562]} Probab=44.41 E-value=7.9 Score=15.70 Aligned_cols=95 Identities=16% Similarity=0.199 Sum_probs=62.0 Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-----------------CCCCCHHHHHHHHHHHHCCCCEEEECCCCC Q ss_conf 467899899999999999855893598001230-----------------000498999999999850692899749763 Q gi|254780558|r 244 LKVTQTVQQLLNRLRYSLRRGTGYFGVMNYRGA-----------------MLLSNKESAEVIFKEFAKRGLLFFDDGSSP 306 (396) Q Consensus 244 L~~~~~~~~~~~~l~~~l~~~p~~vGvnNhmGs-----------------~~t~~~~~m~~vl~~l~~rgL~flDs~Ts~ 306 (396) +....+..++.+.|..+.. ...-+|+.+|..- ....++.-.+..+..+++.|.-.+=- T Consensus 74 V~I~vs~~Dil~al~~a~~-~~~kiavV~~~~~~~~~~~~~~ll~~~i~~~~~~~~~e~~~~v~~l~~~G~~vVVG---- 148 (186) T d2pjua1 74 ILIKPSGYDVLQFLAKAGK-LTSSIGVVTYQETIPALVAFQKTFNLRLDQRSYITEEDARGQINELKANGTEAVVG---- 148 (186) T ss_dssp EEECCCHHHHHHHHHHTTC-TTSCEEEEEESSCCHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHHHHTTCCEEEE---- T ss_pred EEECCCHHHHHHHHHHHHH-HCCCEEEEECCCCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEC---- T ss_conf 9970887689999999997-58978999177625699999999599648999638899999999999879989999---- Q ss_pred CCHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHH Q ss_conf 22678989870994698458862899999999999999999987 Q gi|254780558|r 307 RNLTRVLAPKLNLPYMVADLYLDDQVDRDKIREKLKGLEEIART 350 (396) Q Consensus 307 ~Sva~~~A~~~gvp~~~~dvfLD~~~~~~~I~~qL~~l~~~Ar~ 350 (396) .+.+..+|+++|+++ +||- +.+.|++.|+++.++||- T Consensus 149 ~~~~~~~A~~~Gl~~----vli~---S~eSv~~Ai~~A~~lar~ 185 (186) T d2pjua1 149 AGLITDLAEEAGMTG----IFIY---SAATVRQAFSDALDMTRM 185 (186) T ss_dssp SHHHHHHHHHTTSEE----EESS---CHHHHHHHHHHHHHHHHH T ss_pred CHHHHHHHHHCCCCE----EEEE---CHHHHHHHHHHHHHHHHC T ss_conf 859999999849978----9984---789999999999999733 No 21 >d1nxia_ d.58.47.1 (A:) Hypothetical protein VC0424 {Vibrio cholerae [TaxId: 666]} Probab=43.05 E-value=8.3 Score=15.57 Aligned_cols=93 Identities=12% Similarity=0.115 Sum_probs=67.2 Q ss_pred HHHHHHHHHHHHH--CCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCEEEEEEEE Q ss_conf 9999999999985--58935980012300004989999999998506928997497632267898987099469845886 Q gi|254780558|r 251 QQLLNRLRYSLRR--GTGYFGVMNYRGAMLLSNKESAEVIFKEFAKRGLLFFDDGSSPRNLTRVLAPKLNLPYMVADLYL 328 (396) Q Consensus 251 ~~~~~~l~~~l~~--~p~~vGvnNhmGs~~t~~~~~m~~vl~~l~~rgL~flDs~Ts~~Sva~~~A~~~gvp~~~~dvfL 328 (396) +++++.|...+.. -+...-...|- -+..|...++.++..+.+.|+-+.|..-.. .+-|-+...-++.. T Consensus 19 ~~n~eIl~~L~e~Gddl~~~~~IEH~--~~f~d~~~lek~a~~~~~~Gyev~~~~e~e--------~EdG~~~~~~~~~~ 88 (132) T d1nxia_ 19 EETRDIIQALLEDGSDPDALYEIEHH--LFAEDFDKLEKAAVEAFKMGFEVLEAEETE--------DEDGNKLLCFDATM 88 (132) T ss_dssp HHHHHHHHHHHHHTCCTTSCEEEEEE--EEESCHHHHHHHHHHHHHHTCCCBCCCCBC--------CSSCSSBEEEEEEE T ss_pred HHHHHHHHHHHHCCCCCCCCEEEEEE--EEECCHHHHHHHHHHHHHCCCEEEECCCCC--------CCCCCEEEEEEEEE T ss_conf 87999999999679987867566699--996999999999999998798586455255--------57897589999998 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCE Q ss_conf 2899999999999999999987194 Q gi|254780558|r 329 DDQVDRDKIREKLKGLEEIARTTGQ 353 (396) Q Consensus 329 D~~~~~~~I~~qL~~l~~~Ar~~G~ 353 (396) ....+.+.|.++-.++..+|++.|- T Consensus 89 e~~l~~~~I~~~~~~L~~LA~~~~g 113 (132) T d1nxia_ 89 QSALDAKLIDEQVEKLVNLAEKFDI 113 (132) T ss_dssp EECSCHHHHHHHHHHHHHHHHHHTC T ss_pred ECCCCHHHHHHHHHHHHHHHHHHCC T ss_conf 3478989999999999999999596 No 22 >d2q8za1 c.1.2.3 (A:1-323) Protozoan orotidine monophosphate decarboxylase {Plasmodium falciparum (isolate 3D7) (Plasmodium falciparum 3D7) [TaxId: 36329]} Probab=40.97 E-value=6.6 Score=16.20 Aligned_cols=17 Identities=18% Similarity=0.081 Sum_probs=9.7 Q ss_pred HHHHHHHHHHCCCCEEE Q ss_conf 89999999985992999 Q gi|254780558|r 209 LDRWMKEAKKKGQEAIL 225 (396) Q Consensus 209 ~~~~~~~Ar~~G~Evll 225 (396) +.+.++.+|..|+.|++ T Consensus 119 L~~~i~~~~~~g~~Vfl 135 (323) T d2q8za1 119 LKNVFDYLYELNIPTIL 135 (323) T ss_dssp HHHHHHHHHHHTCCEEE T ss_pred HHHHHHHHCCCCCEEEE T ss_conf 99998762236862898 No 23 >d2q02a1 c.1.15.4 (A:1-271) Putative cytoplasmic protein STM4435 {Salmonella typhimurium [TaxId: 90371]} Probab=39.17 E-value=9.6 Score=15.19 Aligned_cols=17 Identities=18% Similarity=0.442 Sum_probs=8.6 Q ss_pred HHHHHHHHHCCCCEEEE Q ss_conf 99999999859929998 Q gi|254780558|r 210 DRWMKEAKKKGQEAILQ 226 (396) Q Consensus 210 ~~~~~~Ar~~G~Evllh 226 (396) +++.+.|++-|-..+.- T Consensus 87 ~~~i~~a~~lG~~~v~~ 103 (271) T d2q02a1 87 EGLLRDAQGVGARALVL 103 (271) T ss_dssp HHHHHHHHHHTCSEEEE T ss_pred HHHHHHHHHCCCCEEEE T ss_conf 99999999829968999 No 24 >d1jpdx1 c.1.11.2 (X:114-321) L-Ala-D/L-Glu epimerase {Escherichia coli [TaxId: 562]} Probab=36.28 E-value=11 Score=14.91 Aligned_cols=141 Identities=11% Similarity=0.084 Sum_probs=70.3 Q ss_pred CCCCCEEEEECCCC---CHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEE Q ss_conf 79350898708987---689999999985992999817665689877878554467899899999999999855893598 Q gi|254780558|r 194 LPANITLAFASNGN---SLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLKVTQTVQQLLNRLRYSLRRGTGYFGV 270 (396) Q Consensus 194 LP~~vT~A~~P~~~---~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~~~~~~~~~~~l~~~l~~~p~~vGv 270 (396) ||.+|..++.=... ...+.++.+++.|+..+= + ..|+. . ..+++....+.+|... + T Consensus 2 ~p~~~~~~~tv~~~tpe~~~~~a~~~~~~G~~~~K-i----------Kvg~~------~---d~~~i~~ir~~~~d~~-l 60 (208) T d1jpdx1 2 LPETVITAQTVVIGTPDQMANSASTLWQAGAKLLK-V----------KLDNH------L---ISERMVAIRTAVPDAT-L 60 (208) T ss_dssp CCSEEEBCEEECSCCHHHHHHHHHHHHHTTCSEEE-E----------ECCSS------C---HHHHHHHHHHHCTTSE-E T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEE-E----------ECCCC------C---HHHHHHHHHHHCCCCE-E T ss_conf 99844655674789999999999999977999899-9----------77998------3---7999999997453658-9 Q ss_pred EECCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCEEEEEEEECCC-CCHHHH------------ Q ss_conf 0012300004989999999998506928997497632267898987099469845886289-999999------------ Q gi|254780558|r 271 MNYRGAMLLSNKESAEVIFKEFAKRGLLFFDDGSSPRNLTRVLAPKLNLPYMVADLYLDDQ-VDRDKI------------ 337 (396) Q Consensus 271 nNhmGs~~t~~~~~m~~vl~~l~~rgL~flDs~Ts~~Sva~~~A~~~gvp~~~~dvfLD~~-~~~~~I------------ 337 (396) .=-.-.+++.+. ...+++.|++.++.|+-.-........-...+..+| +-+|.. .+...+ T Consensus 61 ~vDaN~~~s~~~--A~~~~~~l~~~~l~~iEeP~~~~d~~~~~~l~~~~p-----i~~~E~~~~~~~~~~l~~~~d~~~~ 133 (208) T d1jpdx1 61 IVDANESWRAEG--LAARCQLLADLGVAMLEQPLPAQDDAALENFIHPLP-----ICADESCHTRSNLKALKGRYEMVNI 133 (208) T ss_dssp EEECTTCCCSTT--HHHHHHHHHHTTCCEEECCSCTTSCGGGGSSCCSSC-----EEESTTCSSGGGHHHHBTTBSEEEE T ss_pred EEECCCCCCHHH--HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCC-----EECCCCCCCHHHHHHHHHCCCEEEE T ss_conf 981543200167--899999887422002576689537899986611560-----3037886888898877621688996 Q ss_pred -------HHHHHHHHHHHHHCCEEEEEEECCH Q ss_conf -------9999999999987194899980887 Q gi|254780558|r 338 -------REKLKGLEEIARTTGQAIGVAVAFD 362 (396) Q Consensus 338 -------~~qL~~l~~~Ar~~G~AI~igh~~p 362 (396) ..+..++..+|+.+|.-+.++.... T Consensus 134 d~~~~GGi~~~~~~a~~a~~~g~~~~~~~~~~ 165 (208) T d1jpdx1 134 KLDKTGGLTEALALATEARAQGFSLMLGCMLC 165 (208) T ss_dssp CHHHHTSHHHHHHHHHHHHHTTCEEEECCCSC T ss_pred CCCCCCCHHHHHHHHHHHHHCCCEEEECCCCH T ss_conf 88323989999999999998499066648732 No 25 >d1sjda1 c.1.11.2 (A:126-367) N-acylamino acid racemase {Amycolatopsis sp. [TaxId: 37632]} Probab=35.94 E-value=11 Score=14.87 Aligned_cols=141 Identities=11% Similarity=0.128 Sum_probs=76.6 Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHHCCCCEE-EECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEE Q ss_conf 7935089870898768999999998599299-981766568987787855446789989999999999985589359800 Q gi|254780558|r 194 LPANITLAFASNGNSLDRWMKEAKKKGQEAI-LQIPMQAFDESYNEDDSYTLKVTQTVQQLLNRLRYSLRRGTGYFGVMN 272 (396) Q Consensus 194 LP~~vT~A~~P~~~~~~~~~~~Ar~~G~Evl-lhlPMEp~~~~~~~pGp~~L~~~~~~~~~~~~l~~~l~~~p~~vGvnN 272 (396) +|.-.|+.+...-....+.++.++++||..+ +++ |+. .+ .+++......+..-+-+.= T Consensus 5 ipvy~s~g~~~~~~~~~~~~~~~~~~Gf~~~Kikv------------g~~------~D---i~~i~~ir~~~g~~~~l~v 63 (242) T d1sjda1 5 VPCGVSVGIMDTIPQLLDVVGGYLDEGYVRIKLKI------------EPG------WD---VEPVRAVRERFGDDVLLQV 63 (242) T ss_dssp EEBEEEECCCSCHHHHHHHHHHHHHHTCSEEEEEC------------BTT------BS---HHHHHHHHHHHCTTSEEEE T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEC------------CCH------HH---HHHHHHHHHHHCCCEEEEE T ss_conf 68448957989999999999999986999899977------------952------68---9999999987089813742 Q ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCHHH--HHHHHHCCCEEEEEEEECCCCCHHHH------------- Q ss_conf 123000049899999999985069289974976322678--98987099469845886289999999------------- Q gi|254780558|r 273 YRGAMLLSNKESAEVIFKEFAKRGLLFFDDGSSPRNLTR--VLAPKLNLPYMVADLYLDDQVDRDKI------------- 337 (396) Q Consensus 273 hmGs~~t~~~~~m~~vl~~l~~rgL~flDs~Ts~~Sva~--~~A~~~gvp~~~~dvfLD~~~~~~~I------------- 337 (396) -.-..++.+. +.+ +.+ |...+++|+-.-..+..... ++.+..++|.+.-.. ..+.... T Consensus 64 DaN~~~~~~~-a~~-~~~-l~~~~~~~iEeP~~~~d~~~~~~l~~~~~~pia~gE~----~~~~~~~~~~~~~~~~d~~~ 136 (242) T d1sjda1 64 DANTAYTLGD-APQ-LAR-LDPFGLLLIEQPLEEEDVLGHAELARRIQTPICLDES----IVSARAAADAIKLGAVQIVN 136 (242) T ss_dssp ECTTCCCGGG-HHH-HHT-TGGGCCSEEECCSCTTCHHHHHHHHTTCSSCEEESTT----CCSHHHHHHHHHTTCCSEEE T ss_pred CCCCCCCHHH-HHH-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC----CCCCHHHHHHHHCCCCCEEE T ss_conf 2321222025-667-766-4012168887666555479999997605755323523----45621455452047667899 Q ss_pred --------HHHHHHHHHHHHHCCEEEEEEECCH Q ss_conf --------9999999999987194899980887 Q gi|254780558|r 338 --------REKLKGLEEIARTTGQAIGVAVAFD 362 (396) Q Consensus 338 --------~~qL~~l~~~Ar~~G~AI~igh~~p 362 (396) ..+..+...+|.++|.-+.+++... T Consensus 137 ~d~~~~GGit~~~~i~~~A~~~~i~~~~h~~~~ 169 (242) T d1sjda1 137 IKPGRVGGYLEARRVHDVCAAHGIPVWCGGMIE 169 (242) T ss_dssp ECTTTTTSHHHHHHHHHHHHHTTCCEEECCCCC T ss_pred ECCCCCCCCHHHHHHHHHHHHCCCEEEECCCCC T ss_conf 614447662145579999998799796046666 No 26 >d1x64a2 g.39.1.3 (A:53-83) PDZ and LIM domain protein 3, PDLIM3 {Mouse (Mus musculus) [TaxId: 10090]} Probab=35.83 E-value=4.6 Score=17.19 Aligned_cols=12 Identities=17% Similarity=0.653 Sum_probs=10.1 Q ss_pred HHCCCCEEEECC Q ss_conf 850692899749 Q gi|254780558|r 292 FAKRGLLFFDDG 303 (396) Q Consensus 292 l~~rgL~flDs~ 303 (396) ||+||.||+++. T Consensus 9 LKqrG~Ffv~~~ 20 (31) T d1x64a2 9 LKQKGYFFVEGE 20 (31) T ss_dssp TTTSCCEEETTE T ss_pred HHHCCEEEECCE T ss_conf 313544885448 No 27 >d1to3a_ c.1.10.1 (A:) Putative aldolase YihT {Salmonella typhimurium [TaxId: 90371]} Probab=35.18 E-value=11 Score=14.80 Aligned_cols=18 Identities=11% Similarity=0.304 Sum_probs=14.2 Q ss_pred HHHHHHHHHHCCCCEEEE Q ss_conf 899999999859929998 Q gi|254780558|r 209 LDRWMKEAKKKGQEAILQ 226 (396) Q Consensus 209 ~~~~~~~Ar~~G~Evllh 226 (396) ..+..+.+++.|+++|++ T Consensus 142 ~~~l~~~c~~~glp~llE 159 (291) T d1to3a_ 142 VKEFNELCHSNGLLSIIE 159 (291) T ss_dssp HHHHHHHHHTTTCEEEEE T ss_pred HHHHHHHHHHCCCCCEEE T ss_conf 999999999739961689 No 28 >d1o98a2 c.76.1.3 (A:2-76,A:311-510) 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, catalytic domain {Bacillus stearothermophilus [TaxId: 1422]} Probab=33.88 E-value=11 Score=14.73 Aligned_cols=15 Identities=13% Similarity=0.375 Sum_probs=7.3 Q ss_pred EEEEEECCCCCCCHH Q ss_conf 589997377877168 Q gi|254780558|r 172 RIAIVVSGLGISQTG 186 (396) Q Consensus 172 riAIVIddlG~~~~~ 186 (396) -|-||+||+|++... T Consensus 5 vvliilD~~G~~~~~ 19 (275) T d1o98a2 5 VALIILDGFALRDET 19 (275) T ss_dssp EEEEEETTCCCCSCC T ss_pred EEEEEECCCCCCCCC T ss_conf 899998999878777 No 29 >d2csua3 c.23.4.1 (A:291-453) Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]} Probab=33.80 E-value=12 Score=14.66 Aligned_cols=152 Identities=14% Similarity=0.133 Sum_probs=82.3 Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCC Q ss_conf 68658999737787716889999837935089870898768999999998599299981766568987787855446789 Q gi|254780558|r 169 SGARIAIVVSGLGISQTGTQRAINLLPANITLAFASNGNSLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLKVTQ 248 (396) Q Consensus 169 ~~~riAIVIddlG~~~~~~~~ai~~LP~~vT~A~~P~~~~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~~~ 248 (396) ++.||+||=..=|.+... .+++.+.. +-+.+..+...+..+.. +| ++.... + |-.+..+. T Consensus 2 ~G~rvaiit~sGG~~~l~-aD~~~~~G----l~l~~l~~~t~~~L~~~----------lp--~~~~~~-N--PlD~~~~~ 61 (163) T d2csua3 2 RGNKVAIMTNAGGPGVLT-ADELDKRG----LKLATLEEKTIEELRSF----------LP--PMAAVK-N--PVDMIASA 61 (163) T ss_dssp SSSEEEEEESCHHHHHHH-HHHHHTTT----CEECCCCHHHHHHHHHH----------SC--TTCEES-S--EEECCTTC T ss_pred CCCEEEEEECCHHHHHHH-HHHHHHCC----CCCCCCCHHHHHHHHHH----------CC--CCCCCC-C--CCCCCCCC T ss_conf 997599997786899999-99999859----95689999999999976----------88--734678-7--41256889 Q ss_pred CHHHHHHHHHHHHHHCCCCEEE-EECCC---CCCCCCHHHHHHHHHHHHCCC----CEEE-ECCCCCCCHHHHHHHHHCC Q ss_conf 9899999999999855893598-00123---000049899999999985069----2899-7497632267898987099 Q gi|254780558|r 249 TVQQLLNRLRYSLRRGTGYFGV-MNYRG---AMLLSNKESAEVIFKEFAKRG----LLFF-DDGSSPRNLTRVLAPKLNL 319 (396) Q Consensus 249 ~~~~~~~~l~~~l~~~p~~vGv-nNhmG---s~~t~~~~~m~~vl~~l~~rg----L~fl-Ds~Ts~~Sva~~~A~~~gv 319 (396) +.+...+.++..++. +++-+| ..+.- +... ....++.++..+++.+ +++. -.+... ..+.+.-++.|+ T Consensus 62 ~~~~~~~~l~~~~~d-~~vd~v~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~kpv~~~~~~~~~~-~~~~~~l~~~Gi 138 (163) T d2csua3 62 RGEDYYRTAKLLLQD-PNVDMLIAICVVPTFAGMT-LTEHAEGIIRAVKEVNNEKPVLAMFMAGYVS-EKAKELLEKNGI 138 (163) T ss_dssp CHHHHHHHHHHHHHS-TTCSEEEEEEECCCSTTCC-SSHHHHHHHHHHHHHCCCCCEEEEEECTTTT-HHHHHHHHTTTC T ss_pred CHHHHHHHHHHHHCC-CCCCEEEEEECCCCCCCCC-HHHHHHHHHHHHHHHCCCCCEEEEECCCCCH-HHHHHHHHHCCC T ss_conf 989999999999759-8768798861257766555-8999999999999836997279998999876-999999998899 Q ss_pred CEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCC Q ss_conf 469845886289999999999999999998719 Q gi|254780558|r 320 PYMVADLYLDDQVDRDKIREKLKGLEEIARTTG 352 (396) Q Consensus 320 p~~~~dvfLD~~~~~~~I~~qL~~l~~~Ar~~G 352 (396) |+. .+.+.--+.|..+.+.+|..| T Consensus 139 p~f---------~~pe~a~~Al~~l~~~~r~~~ 162 (163) T d2csua3 139 PTY---------ERPEDVASAAYALVEQAKNVG 162 (163) T ss_dssp CEE---------SSHHHHHHHHHHHHHHHHHTT T ss_pred CCC---------CCHHHHHHHHHHHHHHHHCCC T ss_conf 867---------999999999999999986679 No 30 >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} Probab=32.56 E-value=8.9 Score=15.40 Aligned_cols=170 Identities=11% Similarity=0.114 Sum_probs=87.0 Q ss_pred EEECCCCCCCHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHH Q ss_conf 99737787716889999837935089870898768999999998599299981766568987787855446789989999 Q gi|254780558|r 175 IVVSGLGISQTGTQRAINLLPANITLAFASNGNSLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLKVTQTVQQLL 254 (396) Q Consensus 175 IVIddlG~~~~~~~~ai~~LP~~vT~A~~P~~~~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~~~~~~~~~ 254 (396) |.=-|.|.+... ..+....+..|| .|..........-+++.+.|..--+++= -.||... +++ T Consensus 66 VLDiGCG~G~~a-~~~a~~~g~~v~-git~s~~Q~~~a~~~~~~~g~~~~v~~~--~~d~~~~-~~~------------- 127 (285) T d1kpga_ 66 LLDVGCGWGATM-MRAVEKYDVNVV-GLTLSKNQANHVQQLVANSENLRSKRVL--LAGWEQF-DEP------------- 127 (285) T ss_dssp EEEETCTTSHHH-HHHHHHHCCEEE-EEESCHHHHHHHHHHHHTCCCCSCEEEE--ESCGGGC-CCC------------- T ss_pred EEEECCCCHHHH-HHHHHCCCCCEE-EEECCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHCC-CCC------------- T ss_conf 999357401888-988752896148-8714377899999998764111126888--7643213-344------------- Q ss_pred HHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCHH-------HHHHHHHCCCEEEEEEE Q ss_conf 99999998558935980012300004989999999998506928997497632267-------89898709946984588 Q gi|254780558|r 255 NRLRYSLRRGTGYFGVMNYRGAMLLSNKESAEVIFKEFAKRGLLFFDDGSSPRNLT-------RVLAPKLNLPYMVADLY 327 (396) Q Consensus 255 ~~l~~~l~~~p~~vGvnNhmGs~~t~~~~~m~~vl~~l~~rgL~flDs~Ts~~Sva-------~~~A~~~gvp~~~~dvf 327 (396) +++ =-.+|+..|||.+. ....++.+-+.|+..|.++|.+-+...... ...-....+++..+.+| T Consensus 128 ------fD~-i~si~~~eh~~~~~--~~~~~~~~~r~LkpgG~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~fi~kyiF 198 (285) T d1kpga_ 128 ------VDR-IVSIGAFEHFGHER--YDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIF 198 (285) T ss_dssp ------CSE-EEEESCGGGTCTTT--HHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTS T ss_pred ------CCC-EEEEHHHHHCCCHH--HHHHHHHHHHHCCCCCCEEEEEEECCCCHHHCCCCCCCCHHHHCHHHHHHHHHC T ss_conf ------441-11304346507146--789999998524899719999996368423202567764122020268887732 Q ss_pred ECCC-CCHHHHHHHHHHHHHHHHHCCEEEEEEEC-CHHHHHHHHHHHHHHHHC Q ss_conf 6289-99999999999999999871948999808-878899999997568876 Q gi|254780558|r 328 LDDQ-VDRDKIREKLKGLEEIARTTGQAIGVAVA-FDESIEVISQWLQQEHVR 378 (396) Q Consensus 328 LD~~-~~~~~I~~qL~~l~~~Ar~~G~AI~igh~-~p~Ti~~L~~w~~~l~~~ 378 (396) -... ++. ......+.+.|.-|---+- .......|..|...++++ T Consensus 199 pgg~lPsl-------~~~~~~~e~agf~v~~~~~~~~hYarTl~~W~~~f~~~ 244 (285) T d1kpga_ 199 PGGRLPSI-------PMVQECASANGFTVTRVQSLQPHYAKTLDLWSAALQAN 244 (285) T ss_dssp TTCCCCCH-------HHHHHHHHTTTCEEEEEEECHHHHHHHHHHHHHHHHHT T ss_pred CCCCCCCH-------HHHHHHHHHHCHHHCCCCCCHHHHHHHHHHHHHHHHHH T ss_conf 58888870-------36778898732000021142466999999999999999 No 31 >d1x62a1 g.39.1.3 (A:43-73) PDZ and LIM domain protein 1 Elfin {Human (Homo sapiens) [TaxId: 9606]} Probab=30.45 E-value=4.7 Score=17.17 Aligned_cols=12 Identities=25% Similarity=0.722 Sum_probs=10.1 Q ss_pred HHCCCCEEEECC Q ss_conf 850692899749 Q gi|254780558|r 292 FAKRGLLFFDDG 303 (396) Q Consensus 292 l~~rgL~flDs~ 303 (396) ||+||.||+++. T Consensus 9 LKqrG~Ffve~~ 20 (31) T d1x62a1 9 LKQKGHFFVEDQ 20 (31) T ss_dssp HHHHCCEESSSC T ss_pred HHHCCEEEECCE T ss_conf 313443785447 No 32 >d1u1ia1 c.2.1.3 (A:1-227,A:333-392) Myo-inositol 1-phosphate synthase {Archaeoglobus fulgidus [TaxId: 2234]} Probab=29.01 E-value=14 Score=14.15 Aligned_cols=88 Identities=18% Similarity=0.211 Sum_probs=62.1 Q ss_pred HHHHHHHHHHHCCCCEEEECCCCCC---CHHHHHHHHHCCCEEEEEEEECCCCC--HHHHHHHHHHHHHHHHHCCEEEEE Q ss_conf 9999999998506928997497632---26789898709946984588628999--999999999999999871948999 Q gi|254780558|r 283 ESAEVIFKEFAKRGLLFFDDGSSPR---NLTRVLAPKLNLPYMVADLYLDDQVD--RDKIREKLKGLEEIARTTGQAIGV 357 (396) Q Consensus 283 ~~m~~vl~~l~~rgL~flDs~Ts~~---Sva~~~A~~~gvp~~~~dvfLD~~~~--~~~I~~qL~~l~~~Ar~~G~AI~i 357 (396) +.|=.....|+ .|--|+.--=+.. ---.++|++.|+|.+- |+-.+ -..|.+.+......||+.|..-.. T Consensus 181 aS~lYA~AAl~-aG~~fVN~tPs~~a~~Pal~ela~~~gvPiaG-----dD~Kt~~g~tl~~~~l~~~~~~~~~~~~g~~ 254 (287) T d1u1ia1 181 ASMLYAYAALK-LGLPYANFTPSPGSAIPALKELAEKKGVPHAG-----NDGKAIVAAPLILDIARFLLFAKKKGVKGVV 254 (287) T ss_dssp HHHHHHHHHHH-TTCCEEECSSSCTTCSHHHHHHHHTTTCEEEE-----SSBCHHHHHHHHHHHHHHHHHHHTTTCCEEC T ss_pred HHHHHHHHHHH-CCCCEEECCCCCCCCCHHHHHHHHHCCCCEEC-----CCHHHCCCCHHHHHHHHHHHHHHHCCCCCCC T ss_conf 67999999998-59977705674256888999999986997755-----4033124506799999999999864887661 Q ss_pred E--------------ECCHHHHHHHHHHHHHHH Q ss_conf 8--------------088788999999975688 Q gi|254780558|r 358 A--------------VAFDESIEVISQWLQQEH 376 (396) Q Consensus 358 g--------------h~~p~Ti~~L~~w~~~l~ 376 (396) + |-+.+.+..|..|...|+ T Consensus 255 ~~~~~~~k~~~~~~~~~~~~q~~~l~~~~~~~~ 287 (287) T d1u1ia1 255 KEMAFFFKSPMDTNVINTHEQFVVLKEWYSNLK 287 (287) T ss_dssp TTCGGGBSSCTTCCCCCHHHHHHHHHHHHHHHC T ss_pred HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCC T ss_conf 466677427446774248999999999987349 No 33 >d2fdsa1 c.1.2.3 (A:1-324) Protozoan orotidine monophosphate decarboxylase {Plasmodium berghei [TaxId: 5821]} Probab=28.18 E-value=14 Score=14.06 Aligned_cols=132 Identities=10% Similarity=0.090 Sum_probs=71.6 Q ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCCCCCCCHHHHHH Q ss_conf 8999999998599299981766568987787855446789989999999999985-589359800123000049899999 Q gi|254780558|r 209 LDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLKVTQTVQQLLNRLRYSLRR-GTGYFGVMNYRGAMLLSNKESAEV 287 (396) Q Consensus 209 ~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~~~~~~~~~~~l~~~l~~-~p~~vGvnNhmGs~~t~~~~~m~~ 287 (396) +.+..+.++..|+.|++-+ +.. .=+.........+++. -..++-|+-+||... |++ T Consensus 121 L~~~i~~l~~~g~~VflDl-------K~~----------DIpnTv~~ya~a~~~~l~aD~lTVh~~~G~d~------l~~ 177 (324) T d2fdsa1 121 LKNVFDYLNSMNIPTMLDM-------KIN----------DIGNTVKNYRKFIFEYLKSDSCTINVYMGTSM------LKD 177 (324) T ss_dssp HHHHHHHHHHTTCCEEEEE-------EEC----------CCHHHHHHHHHHHHTTSCCSEEEECCTTCSTT------HHH T ss_pred HHHHHHHHHCCCCCEEEEH-------HHC----------CHHHHHHHHHHHHHCCCCCCEEEECCCCCHHH------HHH T ss_conf 9999998640587289740-------120----------63769999999764058976798615674899------999 Q ss_pred HHHHHH---CCCCEEEECCCCCCCHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHH----HCCEEEEEEEC Q ss_conf 999985---06928997497632267898987099469845886289999999999999999998----71948999808 Q gi|254780558|r 288 IFKEFA---KRGLLFFDDGSSPRNLTRVLAPKLNLPYMVADLYLDDQVDRDKIREKLKGLEEIAR----TTGQAIGVAVA 360 (396) Q Consensus 288 vl~~l~---~rgL~flDs~Ts~~Sva~~~A~~~gvp~~~~dvfLD~~~~~~~I~~qL~~l~~~Ar----~~G~AI~igh~ 360 (396) ++.... .+|++.|-.-+++.|.-.+ .. ...|+..-...+...+.++..... ..+.-+.+|.. T Consensus 178 ~~~~~~~~~~kgv~vL~~tSn~~s~~~q--~~---------~~~~~~~~~~~v~~~~~~~a~~~~~~~~~~~~G~Vvgat 246 (324) T d2fdsa1 178 ICFDYEKNKYYSAYVLIKTTNKDSFIFQ--NE---------LSINDKQAYIVMAEETQKMATDLKIDQNNEFIGFVVGSN 246 (324) T ss_dssp HSEETTTTEECEEEEEEECSSGGGHHHH--TT---------CEETTEEHHHHHHHHHHHHHHHHTTGGGTCCEEEEECTT T ss_pred HHHHHHHCCCCCCEEEEECCCHHHHHHH--HH---------HCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEECCC T ss_conf 9998874257653022003751777765--43---------124776320157899999999977641357766363354 Q ss_pred CHHHHHHHHHHHHH Q ss_conf 87889999999756 Q gi|254780558|r 361 FDESIEVISQWLQQ 374 (396) Q Consensus 361 ~p~Ti~~L~~w~~~ 374 (396) +|+.+..+.+..++ T Consensus 247 ~p~el~~iR~~~~~ 260 (324) T d2fdsa1 247 AFEEMKIIRNKFPD 260 (324) T ss_dssp CHHHHHHHHHHSTT T ss_pred HHHHHHHHHHHCCC T ss_conf 06787888876899 No 34 >d2g0wa1 c.1.15.4 (A:10-284) Hypothetical protein Lmo2234 {Listeria monocytogenes [TaxId: 1639]} Probab=26.70 E-value=15 Score=13.90 Aligned_cols=100 Identities=11% Similarity=0.027 Sum_probs=60.5 Q ss_pred HHHHHHHHHCCCCCEEEEECCCC-------------CHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHH Q ss_conf 68899998379350898708987-------------68999999998599299981766568987787855446789989 Q gi|254780558|r 185 TGTQRAINLLPANITLAFASNGN-------------SLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLKVTQTVQ 251 (396) Q Consensus 185 ~~~~~ai~~LP~~vT~A~~P~~~-------------~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~~~~~~ 251 (396) ....+.+.+....++ ++.++.. ..+++.+.|+.-|-..+..-+.. ....+ T Consensus 50 ~~~~~~l~~~gl~i~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~A~~lG~~~v~~~~~~----------------~~~~~ 112 (275) T d2g0wa1 50 EDMLRILDEHNMKVT-EVEYITQWGTAEDRTAEQQKKEQTTFHMARLFGVKHINCGLLE----------------KIPEE 112 (275) T ss_dssp HHHHHHHHHTTCEEE-EEECBCCCSSTTTCCHHHHHHHHHHHHHHHHHTCCEEEECCCS----------------CCCHH T ss_pred HHHHHHHHHCCCCEE-EEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEECCCCC----------------CHHHH T ss_conf 999999997499369-9850346677806678999999999999998199547318998----------------14789 Q ss_pred HHHHHHHHHHHHCCCC-EEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEEC Q ss_conf 9999999999855893-59800123000049899999999985069289974 Q gi|254780558|r 252 QLLNRLRYSLRRGTGY-FGVMNYRGAMLLSNKESAEVIFKEFAKRGLLFFDD 302 (396) Q Consensus 252 ~~~~~l~~~l~~~p~~-vGvnNhmGs~~t~~~~~m~~vl~~l~~rgL~flDs 302 (396) ...++|.+.....-.+ +.+-+|..+-+ .+..-+..+++.+...++++.-+ T Consensus 113 ~~~~~l~~l~~~a~~~gi~le~~~~~~~-~t~~~~~~l~~~v~~~~~g~~~D 163 (275) T d2g0wa1 113 QIIVALGELCDRAEELIIGLEFMPYSGV-ADLQAAWRVAEACGRDNAQLICD 163 (275) T ss_dssp HHHHHHHHHHHHHTTSEEEEECCTTSSS-CSHHHHHHHHHHHTCTTEEEEEE T ss_pred HHHHHHHHHHHHHHHCCEEEEEECCCCC-CCHHHHHHHHHHHCCCCCCCCCC T ss_conf 9999999999998746726743025788-99999999998742544312445 No 35 >d1m5wa_ c.1.24.1 (A:) Pyridoxine 5'-phosphate synthase {Escherichia coli [TaxId: 562]} Probab=25.89 E-value=16 Score=13.81 Aligned_cols=114 Identities=13% Similarity=0.277 Sum_probs=75.4 Q ss_pred HHHHHHCCCCEEEEEC--------CCCCCCCCHHHHHHHHHHHHCCCC---EEEECCCCCCCHHHHHHHHHCCCEEEEEE Q ss_conf 9999855893598001--------230000498999999999850692---89974976322678989870994698458 Q gi|254780558|r 258 RYSLRRGTGYFGVMNY--------RGAMLLSNKESAEVIFKEFAKRGL---LFFDDGSSPRNLTRVLAPKLNLPYMVADL 326 (396) Q Consensus 258 ~~~l~~~p~~vGvnNh--------mGs~~t~~~~~m~~vl~~l~~rgL---~flDs~Ts~~Sva~~~A~~~gvp~~~~dv 326 (396) .-++.--|..+-+.-- -|=-+..+..-++.+++.|++.|. +|+|. .-..-+.|++.|....+-+- T Consensus 80 ~ia~~~kP~qvtLVPe~r~elTTegGld~~~~~~~L~~~i~~l~~~girvSLFiDp----d~~~i~~a~~lGad~IElhT 155 (242) T d1m5wa_ 80 AIAVETKPHFCCLVPEKRQEVTTEGGLDVAGQRDKMRDACKRLADAGIQVSLFIDA----DEEQIKAAAEVGAPFIEIHT 155 (242) T ss_dssp HHHHHHCCSEEEECCCCSSCSSCCSCCCSGGGHHHHHHHHHHHHHTTCEEEEEECS----CHHHHHHHHHTTCSEEEEEC T ss_pred HHHHHHCCCEEEEEECCCCCCCCCCCEEEHHHHHHHHHHHHHHHHCCCEEEEEECC----CHHHHHHHHHCCCCEEEEEC T ss_conf 99987163227886257555576775520215889999999998669707999445----24657788642766355320 Q ss_pred --EECC--CCCHHHHHHHHHHHHHHHHHCCEEEEEEECCH-HHHHHHHHHHHHHH Q ss_conf --8628--99999999999999999987194899980887-88999999975688 Q gi|254780558|r 327 --YLDD--QVDRDKIREKLKGLEEIARTTGQAIGVAVAFD-ESIEVISQWLQQEH 376 (396) Q Consensus 327 --fLD~--~~~~~~I~~qL~~l~~~Ar~~G~AI~igh~~p-~Ti~~L~~w~~~l~ 376 (396) |-+. .........++.++...|++.|--|--||-.. +++..|.+ ++.++ T Consensus 156 G~Ya~a~~~~~~~~el~~i~~aa~~A~~lGL~VnAGHgLn~~Nl~~i~~-ip~i~ 209 (242) T d1m5wa_ 156 GCYADAKTDAEQAQELARIAKAATFAASLGLKVNAGHGLTYHNVKAIAA-IPEMH 209 (242) T ss_dssp HHHHHCCSHHHHHHHHHHHHHHHHHHHHTTCEEEEESSCCTTTHHHHHT-CTTEE T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHC-CCCCE T ss_conf 2110235410257789999999999986688555898867200599844-89976 No 36 >d1uv7a_ d.67.4.1 (A:) General secretion pathway protein M, EpsM {Vibrio cholerae [TaxId: 666]} Probab=24.51 E-value=15 Score=13.90 Aligned_cols=41 Identities=12% Similarity=0.122 Sum_probs=26.9 Q ss_pred HHHHHCCEEEEEEEC---------CHHHHHHHHHHHHHHH-HCCCEEEEHH Q ss_conf 999871948999808---------8788999999975688-7691899677 Q gi|254780558|r 346 EIARTTGQAIGVAVA---------FDESIEVISQWLQQEH-VRDVSVVPLS 386 (396) Q Consensus 346 ~~Ar~~G~AI~igh~---------~p~Ti~~L~~w~~~l~-~~gi~lVpvS 386 (396) +-|+++|..|-=--| -++.++.|..|+..|+ ..||.+.-++ T Consensus 9 ~Sa~~~gl~i~R~QP~gd~vqV~ld~v~F~~ll~WL~~L~~~~Gi~v~~l~ 59 (80) T d1uv7a_ 9 NSTRQFNIELIRVQPRGEMMQVWIQPLPFSQLVSWIAYLQERQGVSVDAID 59 (80) T ss_dssp HHHHHHTCCEEEEEECSSEEEEEECCBCHHHHHHHHHHHHHHSCCEEEEEE T ss_pred HHHHHCCCCEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEEE T ss_conf 999877983898557998799998687989999999999761785799988 No 37 >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} Probab=24.35 E-value=17 Score=13.63 Aligned_cols=170 Identities=9% Similarity=0.132 Sum_probs=97.9 Q ss_pred EEEECCCCCCCHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHH Q ss_conf 99973778771688999983793508987089876899999999859929998176656898778785544678998999 Q gi|254780558|r 174 AIVVSGLGISQTGTQRAINLLPANITLAFASNGNSLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLKVTQTVQQL 253 (396) Q Consensus 174 AIVIddlG~~~~~~~~ai~~LP~~vT~A~~P~~~~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~~~~~~~~ 253 (396) -|.=-|+|.+.. ...+..+.+..|| .+..........-++++..|.+..++.=.. +++.. .|+ T Consensus 64 ~VLDiGCG~G~~-~~~~a~~~g~~v~-git~s~~q~~~a~~~~~~~~l~~~v~~~~~--d~~~~-~~~------------ 126 (291) T d1kpia_ 64 TLLDIGCGWGST-MRHAVAEYDVNVI-GLTLSENQYAHDKAMFDEVDSPRRKEVRIQ--GWEEF-DEP------------ 126 (291) T ss_dssp EEEEETCTTSHH-HHHHHHHHCCEEE-EEESCHHHHHHHHHHHHHSCCSSCEEEEEC--CGGGC-CCC------------ T ss_pred EEEEECCCCHHH-HHHHHHHCCCCEE-ECCCHHHHHHHHHHHHHHHCCCHHHHHHHH--CCCCC-CCC------------ T ss_conf 788745762589-9999986475303-105208899999999875111113445542--01133-665------------ Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCC-----CHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHC---------- Q ss_conf 999999998558935980012300004-----98999999999850692899749763226789898709---------- Q gi|254780558|r 254 LNRLRYSLRRGTGYFGVMNYRGAMLLS-----NKESAEVIFKEFAKRGLLFFDDGSSPRNLTRVLAPKLN---------- 318 (396) Q Consensus 254 ~~~l~~~l~~~p~~vGvnNhmGs~~t~-----~~~~m~~vl~~l~~rgL~flDs~Ts~~Sva~~~A~~~g---------- 318 (396) +++ --.+|+..|||.+.-. -+..++.+-+.|+.-|.+|+..-+.++..- ..+.+ T Consensus 127 -------fD~-i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~~~~~~---~~~~~~~~p~~~~~~ 195 (291) T d1kpia_ 127 -------VDR-IVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEE---AQELGLTSPMSLLRF 195 (291) T ss_dssp -------CSE-EEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEECCCHHH---HHHHTCCCCHHHHHH T ss_pred -------CCE-EEECHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCH---HHHCCCCCCHHHCCC T ss_conf -------145-762016776012555567899999999999747998755789996057510---122267774000010 Q ss_pred CCEEEEEEEECCC-CCHHHHHHHHHHHHHHHHHCCEEEE-EEECCHHHHHHHHHHHHHHHHC Q ss_conf 9469845886289-9999999999999999987194899-9808878899999997568876 Q gi|254780558|r 319 LPYMVADLYLDDQ-VDRDKIREKLKGLEEIARTTGQAIG-VAVAFDESIEVISQWLQQEHVR 378 (396) Q Consensus 319 vp~~~~dvfLD~~-~~~~~I~~qL~~l~~~Ar~~G~AI~-igh~~p~Ti~~L~~w~~~l~~~ 378 (396) .++..+.+|=... ++.. ++...+.+.|.-|- +-.-.......|..|...++++ T Consensus 196 ~~fi~kyiFpgg~lps~~-------~~~~~~e~~gl~v~~~~~~~~hYa~TL~~W~~~f~~~ 250 (291) T d1kpia_ 196 IKFILTEIFPGGRLPRIS-------QVDYYSSNAGWKVERYHRIGANYVPTLNAWADALQAH 250 (291) T ss_dssp HHHHHHHTCTTCCCCCHH-------HHHHHHHHHTCEEEEEEECGGGHHHHHHHHHHHHHHT T ss_pred CHHHHHHHCCCCCCCCHH-------HHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHHHH T ss_conf 168988730788888778-------8875301200122023545560999999999999997 No 38 >d1o98a1 c.105.1.1 (A:77-310) 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain {Bacillus stearothermophilus [TaxId: 1422]} Probab=21.99 E-value=19 Score=13.33 Aligned_cols=50 Identities=22% Similarity=0.219 Sum_probs=29.7 Q ss_pred HHHHHHHCCCEEEEEEEECCC-CCHHHHHHHHHHHHHHHHHCCE-EEE--EEEC Q ss_conf 898987099469845886289-9999999999999999987194-899--9808 Q gi|254780558|r 311 RVLAPKLNLPYMVADLYLDDQ-VDRDKIREKLKGLEEIARTTGQ-AIG--VAVA 360 (396) Q Consensus 311 ~~~A~~~gvp~~~~dvfLD~~-~~~~~I~~qL~~l~~~Ar~~G~-AI~--igh~ 360 (396) -++|.+.|++-...+.|+|.. ..+..-...|.+++..-.+.|. -|+ +|+- T Consensus 57 ~~~a~~~gv~~V~iH~~~DGRDt~p~s~~~~l~~l~~~~~~~~~~~IASv~GRy 110 (234) T d1o98a1 57 LRLAAKEGVKRVYIHGFLDGRDVGPQTAPQYIKELQEKIKEYGVGEIATLSGRY 110 (234) T ss_dssp HHHHHHTTCCCEEEEEEECSSSSCTTCHHHHHHHHHHHHHHHTCCEEEEEEEHH T ss_pred HHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCC T ss_conf 999997088741789973377888246899999999975314643687760643 No 39 >d2gnpa1 c.124.1.8 (A:56-317) Transcriptional regulator SP0247 {Streptococcus pneumoniae [TaxId: 1313]} Probab=21.81 E-value=19 Score=13.31 Aligned_cols=18 Identities=11% Similarity=0.143 Sum_probs=9.1 Q ss_pred HHHHCCCEEEEEEEECCC Q ss_conf 987099469845886289 Q gi|254780558|r 314 APKLNLPYMVADLYLDDQ 331 (396) Q Consensus 314 A~~~gvp~~~~dvfLD~~ 331 (396) -.+.|.-.-..-.|+|.+ T Consensus 178 l~~~gavGdi~g~f~d~~ 195 (262) T d2gnpa1 178 LTKVKTVGEICCRFFDSK 195 (262) T ss_dssp HHHTTCCEEETTEEECTT T ss_pred HHHCCCHHHHHHHHCCCC T ss_conf 997681889997661678 No 40 >d2ptza1 c.1.11.1 (A:139-429) Enolase {Trypanosoma brucei [TaxId: 5691]} Probab=20.96 E-value=20 Score=13.20 Aligned_cols=110 Identities=10% Similarity=-0.021 Sum_probs=74.0 Q ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCEEEEEE Q ss_conf 89989999999999985589359800123000049899999999985069289974976322678989870994698458 Q gi|254780558|r 247 TQTVQQLLNRLRYSLRRGTGYFGVMNYRGAMLLSNKESAEVIFKEFAKRGLLFFDDGSSPRNLTRVLAPKLNLPYMVADL 326 (396) Q Consensus 247 ~~~~~~~~~~l~~~l~~~p~~vGvnNhmGs~~t~~~~~m~~vl~~l~~rgL~flDs~Ts~~Sva~~~A~~~gvp~~~~dv 326 (396) .++.+|..+.+..+..+.| .+-+-.-+.- .|-..+..+.+.+.++=...=|+.+..+.. .+.+..... +.+-+ T Consensus 130 ~ls~~elid~y~~l~~~YP-IisIEDp~~e---~D~~gw~~lt~~~g~k~~iVGDDL~vTn~~--rl~~gi~~~-a~Nai 202 (291) T d2ptza1 130 WVTAEQLRETYCKWAHDYP-IVSIEDPYDQ---DDFAGFAGITEALKGKTQIVGDDLTVTNTE--RIKMAIEKK-ACNSL 202 (291) T ss_dssp EECHHHHHHHHHHHHHHSC-EEEEECCSCT---TCHHHHHHHHHHTTTTSEEEESTTTTTCHH--HHHHHHHTT-CCSEE T ss_pred HHHHHHHHHHHHHHHHCCC-EEEECCCCCC---CCHHHHHHHHHCCCCEEEEECCCCCCCCHH--HHHHCCCCC-CCCCE T ss_conf 1048999999998850243-4685077663---024679986411686599844755346567--775331368-76513 Q ss_pred EECCCCCHHHHHHHHHHHHHHHHHCCEEEEEEECCHHHH Q ss_conf 862899999999999999999987194899980887889 Q gi|254780558|r 327 YLDDQVDRDKIREKLKGLEEIARTTGQAIGVAVAFDESI 365 (396) Q Consensus 327 fLD~~~~~~~I~~qL~~l~~~Ar~~G~AI~igh~~p~Ti 365 (396) .|-- ..... ....-++.++|+++|+.+.|.|-.-+|- T Consensus 203 LIK~-NQiGT-vtEt~ea~~la~~~g~~~iiShRSGETe 239 (291) T d2ptza1 203 LLKI-NQIGT-ISEAIASSKLCMENGWSVMVSHRSGETE 239 (291) T ss_dssp EECH-HHHCC-HHHHHHHHHHHHHTTCEEEEECCSBCCS T ss_pred EECC-HHHHH-HHHHHHHHHHHHHCCEEEEEECCCCCCC T ss_conf 7500-12456-8899999999997692699428998867 No 41 >d1hjsa_ c.1.8.3 (A:) Beta-1,4-galactanase {Thielavia heterothallica, aka Myceliophthora thermophila [TaxId: 78579]} Probab=20.85 E-value=20 Score=13.19 Aligned_cols=145 Identities=14% Similarity=0.028 Sum_probs=66.9 Q ss_pred CCHHHHHHHHHHCCCCEEEECCCCCCCCCCC--CCCCCCCCCCC--CHHH----HHHHHHHHHH------HCCCCEEEEE Q ss_conf 7689999999985992999817665689877--87855446789--9899----9999999998------5589359800 Q gi|254780558|r 207 NSLDRWMKEAKKKGQEAILQIPMQAFDESYN--EDDSYTLKVTQ--TVQQ----LLNRLRYSLR------RGTGYFGVMN 272 (396) Q Consensus 207 ~~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~--~pGp~~L~~~~--~~~~----~~~~l~~~l~------~~p~~vGvnN 272 (396) ....+.++.|+++|..|||-+ .|.+. +|+.+.+...- +.++ +.......+. ..+.+++||| T Consensus 60 ~~~~~~v~~a~~~gl~vil~~-----h~~~~wa~~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~~k~~~~~~~~~~i~n 134 (332) T d1hjsa_ 60 DYNIAIAKRAKAAGLGVYIDF-----HYSDTWADPAHQTMPAGWPSDIDNLSWKLYNYTLDAANKLQNAGIQPTIVSIGN 134 (332) T ss_dssp HHHHHHHHHHHHTTCEEEEEE-----CCSSSCCBTTBCBCCTTCCCSHHHHHHHHHHHHHHHHHHHHHTTCCCSEEEESS T ss_pred HHHHHHHHHHHHCCCEEEEEE-----CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCC T ss_conf 999999999998899799983-----678654576656787544321567999999999999999985387314766326 Q ss_pred CCCCCC------CCCHHHHHH----HHHHHHC----CCCEEEECCCCCCC---HHHH--HHHHHCC----C--EEEEEEE Q ss_conf 123000------049899999----9999850----69289974976322---6789--8987099----4--6984588 Q gi|254780558|r 273 YRGAML------LSNKESAEV----IFKEFAK----RGLLFFDDGSSPRN---LTRV--LAPKLNL----P--YMVADLY 327 (396) Q Consensus 273 hmGs~~------t~~~~~m~~----vl~~l~~----rgL~flDs~Ts~~S---va~~--~A~~~gv----p--~~~~dvf 327 (396) ...... +.+...+.. ..+.++. .+.-.+-..+++.. ...- .-...+. + +..-+.+ T Consensus 135 E~n~g~~w~~~~~~~~~~~~~l~~~a~~av~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ig~~~Y 214 (332) T d1hjsa_ 135 EIRAGLLWPTGRTENWANIARLLHSAAWGIKDSSLSPKPKIMIHLDNGWDWGTQNWWYTNVLKQGTLELSDFDMMGVSFY 214 (332) T ss_dssp SGGGEETBTTEETTCHHHHHHHHHHHHHHHHTSCCSSCCEEEEEESCTTCHHHHHHHHHHHHTTSSSCGGGCCEEEEECC T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEEC T ss_conf 36776567667741277899999999999985024788504432357675056666789998617555776235744316 Q ss_pred --ECCCCCHHHHHHHHHHHHHHHHHCCEEEEEEE Q ss_conf --62899999999999999999987194899980 Q gi|254780558|r 328 --LDDQVDRDKIREKLKGLEEIARTTGQAIGVAV 359 (396) Q Consensus 328 --LD~~~~~~~I~~qL~~l~~~Ar~~G~AI~igh 359 (396) -+...+...+...+. .++.+.|..|.|.. T Consensus 215 ~~~~~~~~~~~~~~~~~---~~~~~~g~~v~i~E 245 (332) T d1hjsa_ 215 PFYSSSATLSALKSSLD---NMAKTWNKEIAVVE 245 (332) T ss_dssp SSSCTTCCHHHHHHHHH---HHHHHHCCEEEEEE T ss_pred CCCCCCCCHHHHHHHHH---HHHHHHCCCEEEEE T ss_conf 87887777778999999---99998388559998 Done!