RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780558|ref|YP_003064971.1| hypothetical protein
CLIBASIA_02225 [Candidatus Liberibacter asiaticus str. psy62]
         (396 letters)



>2qv5_A AGR_C_5032P, uncharacterized protein ATU2773; structural genomics,
           unknown function, PSI-2, protein structure initiative;
           1.90A {Agrobacterium tumefaciens str}
          Length = 261

 Score =  198 bits (506), Expect = 1e-51
 Identities = 101/225 (44%), Positives = 141/225 (62%)

Query: 166 SNASGARIAIVVSGLGISQTGTQRAINLLPANITLAFASNGNSLDRWMKEAKKKGQEAIL 225
           S A G R+AIVV GLG+SQTG+Q+AI  LP  +TL FA++GNSL RWM++A+++G E +L
Sbjct: 25  SGARGTRVAIVVGGLGLSQTGSQKAIRDLPPEVTLGFAASGNSLQRWMQDARREGHEILL 84

Query: 226 QIPMQAFDESYNEDDSYTLKVTQTVQQLLNRLRYSLRRGTGYFGVMNYRGAMLLSNKESA 285
           QIP++ F          TL      +  ++RL  S+ + T Y GVMNY G   L+ + + 
Sbjct: 85  QIPLEPFGYPGTNPGPDTLLAGDPAKVNIDRLHRSMAKITNYTGVMNYLGGRFLAEQSAL 144

Query: 286 EVIFKEFAKRGLLFFDDGSSPRNLTRVLAPKLNLPYMVADLYLDDQVDRDKIREKLKGLE 345
           E + ++  KRGLLF DDGSS ++L+  +A  ++ P   AD+ LD +V    I  KL  LE
Sbjct: 145 EPVMRDIGKRGLLFLDDGSSAQSLSGGIAKAISAPQGFADVLLDGEVTEASILRKLDDLE 204

Query: 346 EIARTTGQAIGVAVAFDESIEVISQWLQQEHVRDVSVVPLSCLAK 390
            IAR  GQAIGVA AFDESI  IS+W ++   R + +V +S L  
Sbjct: 205 RIARRNGQAIGVASAFDESIAAISKWSREAGGRGIEIVGVSALVS 249


>2nly_A BH1492 protein, divergent polysaccharide deacetylase hypothetical
           protein; PFAM04748, structural genomics, PSI, protein
           structure initiative; 2.50A {Bacillus halodurans} SCOP:
           c.6.2.7
          Length = 245

 Score =  114 bits (286), Expect = 4e-26
 Identities = 46/231 (19%), Positives = 97/231 (41%), Gaps = 7/231 (3%)

Query: 168 ASGARIAIVVSGLGISQTGTQRAINLLPANITLAFASNGNSLDRWMKEAKKKGQEAILQI 227
               R AI++   G    G    +      +T+A         +  + A+  G E I+ +
Sbjct: 1   GEMKRAAIIIDDFGGDVKGVDDFLTG-EIPVTVAVMPFLEHSTKQAEIAQAAGLEVIVHM 59

Query: 228 PMQAFDESYNEDDSYTLKVTQTVQQLLNRLRYSLRRGTGYFGVMNYRGAMLLSNKESAEV 287
           P++      +      +    +V ++ +R+R +        G+ N+ G+ ++ N++    
Sbjct: 60  PLEPKKGKISWLGPSGITSNLSVGEVKSRVRKAFDDIPYAVGLNNHMGSKIVENEKIMRA 119

Query: 288 IFKEFAKRGLLFFDDGSSPRNLTRVLAPKLNLPYMVADLYL-DDQVDRDKIREKLKGLEE 346
           I +   ++     D G+SP +L   LA +L +PY    ++L +    R ++ + ++ L +
Sbjct: 120 ILEVVKEKNAFIIDSGTSPHSLIPQLAEELEVPYATRSIFLDNTHSSRKEVIKNMRKLAK 179

Query: 347 IARTTGQAIGVAVAFD---ESIEVISQWLQQEHVRDVSVVPLSCLAKLSSP 394
            A+   + IG+        E+   I   L +     + +VP+S L  L SP
Sbjct: 180 KAKQGSEPIGIGHVGVRGDETYAGIRSMLDEFQAESIQLVPVSQL--LPSP 228


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 47.6 bits (113), Expect = 5e-06
 Identities = 58/371 (15%), Positives = 105/371 (28%), Gaps = 142/371 (38%)

Query: 91  VCNQLKNDSSQHDGQIQNDISGKTVVNKPTRSTSIDSLPTIEERLILGLSKKELLAK--- 147
           + +QL+   ++              + +PT   + D  PT         +  EL+ K   
Sbjct: 29  IASQLQEQFNKI-------------LPEPTEGFAADDEPT---------TPAELVGKFLG 66

Query: 148 ---NKVGREDTEVPAMD-------KNF-CSNASGARI-AIVVSGLGISQTGTQRAINLLP 195
              + V  E ++V   D         F      G  I A+    L  + T   +   L+ 
Sbjct: 67  YVSSLV--EPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIK 124

Query: 196 ANITLAFASNGNSLDRW---MKEAKKKGQEAILQIPMQAF-----DESYNED-----DSY 242
             IT    +      +    +  A  +G   ++ I    F      + Y E+      +Y
Sbjct: 125 NYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAI----FGGQGNTDDYFEELRDLYQTY 180

Query: 243 TLKVT---QTVQQLLNRLRYSLRRGTGYFGVMNYRGAMLLSNKESAEVIFKEFAKRGLLF 299
            + V    +   + L+ L                     +     AE +F     +GL  
Sbjct: 181 HVLVGDLIKFSAETLSEL---------------------IRTTLDAEKVFT----QGL-- 213

Query: 300 FD-----DGSSPRNLTRVL--APKLNLP---------YMVADLYLDDQVDRDKIREKLKG 343
            +     +  S       L   P ++ P         Y+V    L       ++R  LKG
Sbjct: 214 -NILEWLENPSNTPDKDYLLSIP-ISCPLIGVIQLAHYVVTAKLLG--FTPGELRSYLKG 269

Query: 344 LEEIARTTGQAIGVAVA-----------FDE-SIEVISQ--WL----QQEHVRDVSVVPL 385
                  TG + G+  A           F     + I+   ++     +           
Sbjct: 270 ------ATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYE----------- 312

Query: 386 SCLAKLSSPSS 396
                 S P S
Sbjct: 313 -AYPNTSLPPS 322


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 36.1 bits (82), Expect = 0.014
 Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 9/38 (23%)

Query: 214 KEAKKKGQEAILQIPMQAFDESYNEDDSYTLKVTQTVQ 251
           K+A KK Q A L++        Y +D +  L +  T++
Sbjct: 19  KQALKKLQ-ASLKL--------YADDSAPALAIKATME 47



 Score = 27.7 bits (60), Expect = 4.3
 Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 8/33 (24%)

Query: 290 KEFAKR---GLLFFDDGSSPRNLTRVLAPKLNL 319
           K+  K+    L  + D S+P      LA K  +
Sbjct: 19  KQALKKLQASLKLYADDSAP-----ALAIKATM 46


>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
           vesicle, membrane, Ca structural protein; 7.94A {Bos
           taurus}
          Length = 190

 Score = 33.0 bits (74), Expect = 0.11
 Identities = 13/55 (23%), Positives = 31/55 (56%), Gaps = 5/55 (9%)

Query: 208 SLDRWMKEAKKKGQE--AILQIPMQAFDESYNED-DSYTLKVTQTVQ--QLLNRL 257
           S+ +W +E +K+ QE  A  ++  Q + E   +D + +  + ++ V+  ++ NR+
Sbjct: 86  SIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRI 140


>2jh3_A Ribosomal protein S2-related protein; CBIX, SAD phasing, structural
           genomics, chelatase super-family fold, 4Fe-4S
           iron-sulphur cluster; 1.9A {Deinococcus radiodurans}
          Length = 474

 Score = 28.8 bits (64), Expect = 2.2
 Identities = 7/52 (13%), Positives = 16/52 (30%)

Query: 334 RDKIREKLKGLEEIARTTGQAIGVAVAFDESIEVISQWLQQEHVRDVSVVPL 385
              +RE+ +          +      +   S   +S+W  +       +VP 
Sbjct: 161 AQALRERGQFAGVEVVLESREALTPESHAASAVPLSEWPSRVEAGQAVLVPF 212


>2ksr_A Neuronal acetylcholine receptor subunit beta-2; nicotinic
           acetylcholine receptors, transmembrane domain, HFI
           junction, cell membrane; NMR {Homo sapiens}
          Length = 164

 Score = 27.6 bits (61), Expect = 5.3
 Identities = 10/57 (17%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 21  SQIISRLGLFLLFCTFIVGLSI--YILISHAFVGTISEMIPYSVIREIAPIPLTIPL 75
           S  +  +G +L+F   +V  SI   + + +    + +   P      +A +   + L
Sbjct: 85  SLDVPLVGKYLMFTMVLVTFSIVTSVCVLNVHHRSPTTHTPRGGGGYVAMVIDRLFL 141


>1yew_A Particulate methane monooxygenase, B subunit; membrane protein,
           copper, zinc, beta barrel, oxidoreductase; 2.80A
           {Methylococcus capsulatus str}
          Length = 382

 Score = 27.4 bits (61), Expect = 5.6
 Identities = 16/55 (29%), Positives = 20/55 (36%), Gaps = 10/55 (18%)

Query: 151 GREDTEVPAMDKNFCSNASGARIAIVVSGLGIS----------QTGTQRAINLLP 195
           GR D  V A D+        A I IVV  +  +          Q GT R +  L 
Sbjct: 190 GRADELVSATDRKVAMGFLAATILIVVMAMSSANSKYPITIPLQAGTMRGMKPLE 244


>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular
           trafficking, endocytosis, hydrolase, GTPase activation;
           1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1
           PDB: 2g77_A*
          Length = 396

 Score = 27.5 bits (60), Expect = 6.3
 Identities = 14/104 (13%), Positives = 35/104 (33%), Gaps = 4/104 (3%)

Query: 250 VQQLLNRL--RYSLRR-GTGYFGVMNYRGAMLLSNKESAEVIFKEFAKRGLLFFDDGSSP 306
           VQ  L R+   +++R   +GY   +N           +  +   +     +         
Sbjct: 109 VQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQIDDVEIKDPSTYMVD 168

Query: 307 RNLTRVLAPKLNLPYMVADLYLDDQVDRDK-IREKLKGLEEIAR 349
             +T + A        + +   D+ +     I  ++K L ++ +
Sbjct: 169 EQITDLEADTFWCLTKLLEQITDNYIHGQPGILRQVKNLSQLVK 212


>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty
           acid synthase, acyl-carrier-protein, beta-ketoacyl
           reductase, beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 1688

 Score = 27.1 bits (59), Expect = 6.6
 Identities = 9/23 (39%), Positives = 15/23 (65%)

Query: 56  EMIPYSVIREIAPIPLTIPLNIE 78
           E+ PY  +++IAP  L   L++E
Sbjct: 795 ELKPYKQVKQIAPAELEGLLDLE 817


>2j4o_A Mitogen-activated protein kinase kinase kinase 7-interacting
           protein 1; TGF-beta, pseudo-phosphatase, TAK1 binding
           protein, protein binding; 2.25A {Homo sapiens} PDB:
           2pom_A 2pop_A
          Length = 401

 Score = 27.2 bits (59), Expect = 7.1
 Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 8/49 (16%)

Query: 266 GYFGVMNYRGAMLLSNKESAEVIFKEFAKRGLLFFDDGSSPRNLTRVLA 314
           G +  +        +N+E A +I  EFAK+         S   + + + 
Sbjct: 291 GLYKALEAAHGPGQANQEIAAMIDTEFAKQT--------SLDAVAQAVV 331


>1u04_A Argonaute, hypothetical protein PF0537; RNAI, silencing, PIWI, PAZ,
           RISC, slicer, RNAse H, hydrolase/gene regulation
           complex; 2.25A {Pyrococcus furiosus dsm 3638} SCOP:
           b.34.14.1 c.55.3.10 PDB: 1z25_A 1z26_A
          Length = 771

 Score = 27.0 bits (59), Expect = 7.6
 Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 1/61 (1%)

Query: 316 KLNLPYMVADLYLDDQVDRDKIREKLKGLEEIARTTGQAIGVAVAFDESIEVISQWLQQE 375
           K+N   +   +Y+   +  D   E  K    I R   + +G+ +  +  I   ++ L+ E
Sbjct: 12  KINKKIIPDKIYVYR-LFNDPEEELQKEGYSIYRLAYENVGIVIDPENLIIATTKELEYE 70

Query: 376 H 376
            
Sbjct: 71  G 71


>3chx_A PMOB; membrane protein, copper, methane, beta barrel; 3.90A
           {Methylosinus trichosporium}
          Length = 392

 Score = 26.7 bits (59), Expect = 9.1
 Identities = 8/65 (12%), Positives = 22/65 (33%), Gaps = 10/65 (15%)

Query: 151 GREDTEVPAMDKNFCSNASGARIAIVVSGLGIS----------QTGTQRAINLLPANITL 200
           G+++ ++   D+   +      I   + G  ++          Q G Q+ +  +    T 
Sbjct: 190 GKDEEQIGDDDRRVGAIVLAVTILATIIGYAVTNSTFPRTIPLQAGLQKPLTPIIEEGTA 249

Query: 201 AFASN 205
               +
Sbjct: 250 GVGPH 254


>1fft_A Ubiquinol oxidase; electron transport, cytochrome oxidase, membrane
           protein, oxidoreductase; HET: HEM HEO; 3.50A
           {Escherichia coli} SCOP: f.24.1.1
          Length = 663

 Score = 26.6 bits (59), Expect = 9.1
 Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 4/45 (8%)

Query: 25  SRLGLFLLFCTFIVGLS----IYILISHAFVGTISEMIPYSVIRE 65
           S  G+ +   + I G +    I+ L    F G I   I  S   +
Sbjct: 589 SGAGIVIAAFSTIFGFAMIWHIWWLAIVGFAGMIITWIVKSFDED 633


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.317    0.134    0.373 

Gapped
Lambda     K      H
   0.267   0.0599    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 3,222,232
Number of extensions: 149068
Number of successful extensions: 461
Number of sequences better than 10.0: 1
Number of HSP's gapped: 456
Number of HSP's successfully gapped: 20
Length of query: 396
Length of database: 5,693,230
Length adjustment: 94
Effective length of query: 302
Effective length of database: 3,414,294
Effective search space: 1031116788
Effective search space used: 1031116788
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.4 bits)