RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780558|ref|YP_003064971.1| hypothetical protein CLIBASIA_02225 [Candidatus Liberibacter asiaticus str. psy62] (396 letters) >2qv5_A AGR_C_5032P, uncharacterized protein ATU2773; structural genomics, unknown function, PSI-2, protein structure initiative; 1.90A {Agrobacterium tumefaciens str} Length = 261 Score = 198 bits (506), Expect = 1e-51 Identities = 101/225 (44%), Positives = 141/225 (62%) Query: 166 SNASGARIAIVVSGLGISQTGTQRAINLLPANITLAFASNGNSLDRWMKEAKKKGQEAIL 225 S A G R+AIVV GLG+SQTG+Q+AI LP +TL FA++GNSL RWM++A+++G E +L Sbjct: 25 SGARGTRVAIVVGGLGLSQTGSQKAIRDLPPEVTLGFAASGNSLQRWMQDARREGHEILL 84 Query: 226 QIPMQAFDESYNEDDSYTLKVTQTVQQLLNRLRYSLRRGTGYFGVMNYRGAMLLSNKESA 285 QIP++ F TL + ++RL S+ + T Y GVMNY G L+ + + Sbjct: 85 QIPLEPFGYPGTNPGPDTLLAGDPAKVNIDRLHRSMAKITNYTGVMNYLGGRFLAEQSAL 144 Query: 286 EVIFKEFAKRGLLFFDDGSSPRNLTRVLAPKLNLPYMVADLYLDDQVDRDKIREKLKGLE 345 E + ++ KRGLLF DDGSS ++L+ +A ++ P AD+ LD +V I KL LE Sbjct: 145 EPVMRDIGKRGLLFLDDGSSAQSLSGGIAKAISAPQGFADVLLDGEVTEASILRKLDDLE 204 Query: 346 EIARTTGQAIGVAVAFDESIEVISQWLQQEHVRDVSVVPLSCLAK 390 IAR GQAIGVA AFDESI IS+W ++ R + +V +S L Sbjct: 205 RIARRNGQAIGVASAFDESIAAISKWSREAGGRGIEIVGVSALVS 249 >2nly_A BH1492 protein, divergent polysaccharide deacetylase hypothetical protein; PFAM04748, structural genomics, PSI, protein structure initiative; 2.50A {Bacillus halodurans} SCOP: c.6.2.7 Length = 245 Score = 114 bits (286), Expect = 4e-26 Identities = 46/231 (19%), Positives = 97/231 (41%), Gaps = 7/231 (3%) Query: 168 ASGARIAIVVSGLGISQTGTQRAINLLPANITLAFASNGNSLDRWMKEAKKKGQEAILQI 227 R AI++ G G + +T+A + + A+ G E I+ + Sbjct: 1 GEMKRAAIIIDDFGGDVKGVDDFLTG-EIPVTVAVMPFLEHSTKQAEIAQAAGLEVIVHM 59 Query: 228 PMQAFDESYNEDDSYTLKVTQTVQQLLNRLRYSLRRGTGYFGVMNYRGAMLLSNKESAEV 287 P++ + + +V ++ +R+R + G+ N+ G+ ++ N++ Sbjct: 60 PLEPKKGKISWLGPSGITSNLSVGEVKSRVRKAFDDIPYAVGLNNHMGSKIVENEKIMRA 119 Query: 288 IFKEFAKRGLLFFDDGSSPRNLTRVLAPKLNLPYMVADLYL-DDQVDRDKIREKLKGLEE 346 I + ++ D G+SP +L LA +L +PY ++L + R ++ + ++ L + Sbjct: 120 ILEVVKEKNAFIIDSGTSPHSLIPQLAEELEVPYATRSIFLDNTHSSRKEVIKNMRKLAK 179 Query: 347 IARTTGQAIGVAVAFD---ESIEVISQWLQQEHVRDVSVVPLSCLAKLSSP 394 A+ + IG+ E+ I L + + +VP+S L L SP Sbjct: 180 KAKQGSEPIGIGHVGVRGDETYAGIRSMLDEFQAESIQLVPVSQL--LPSP 228 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 47.6 bits (113), Expect = 5e-06 Identities = 58/371 (15%), Positives = 105/371 (28%), Gaps = 142/371 (38%) Query: 91 VCNQLKNDSSQHDGQIQNDISGKTVVNKPTRSTSIDSLPTIEERLILGLSKKELLAK--- 147 + +QL+ ++ + +PT + D PT + EL+ K Sbjct: 29 IASQLQEQFNKI-------------LPEPTEGFAADDEPT---------TPAELVGKFLG 66 Query: 148 ---NKVGREDTEVPAMD-------KNF-CSNASGARI-AIVVSGLGISQTGTQRAINLLP 195 + V E ++V D F G I A+ L + T + L+ Sbjct: 67 YVSSLV--EPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIK 124 Query: 196 ANITLAFASNGNSLDRW---MKEAKKKGQEAILQIPMQAF-----DESYNED-----DSY 242 IT + + + A +G ++ I F + Y E+ +Y Sbjct: 125 NYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAI----FGGQGNTDDYFEELRDLYQTY 180 Query: 243 TLKVT---QTVQQLLNRLRYSLRRGTGYFGVMNYRGAMLLSNKESAEVIFKEFAKRGLLF 299 + V + + L+ L + AE +F +GL Sbjct: 181 HVLVGDLIKFSAETLSEL---------------------IRTTLDAEKVFT----QGL-- 213 Query: 300 FD-----DGSSPRNLTRVL--APKLNLP---------YMVADLYLDDQVDRDKIREKLKG 343 + + S L P ++ P Y+V L ++R LKG Sbjct: 214 -NILEWLENPSNTPDKDYLLSIP-ISCPLIGVIQLAHYVVTAKLLG--FTPGELRSYLKG 269 Query: 344 LEEIARTTGQAIGVAVA-----------FDE-SIEVISQ--WL----QQEHVRDVSVVPL 385 TG + G+ A F + I+ ++ + Sbjct: 270 ------ATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYE----------- 312 Query: 386 SCLAKLSSPSS 396 S P S Sbjct: 313 -AYPNTSLPPS 322 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 36.1 bits (82), Expect = 0.014 Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 9/38 (23%) Query: 214 KEAKKKGQEAILQIPMQAFDESYNEDDSYTLKVTQTVQ 251 K+A KK Q A L++ Y +D + L + T++ Sbjct: 19 KQALKKLQ-ASLKL--------YADDSAPALAIKATME 47 Score = 27.7 bits (60), Expect = 4.3 Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 8/33 (24%) Query: 290 KEFAKR---GLLFFDDGSSPRNLTRVLAPKLNL 319 K+ K+ L + D S+P LA K + Sbjct: 19 KQALKKLQASLKLYADDSAP-----ALAIKATM 46 >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Score = 33.0 bits (74), Expect = 0.11 Identities = 13/55 (23%), Positives = 31/55 (56%), Gaps = 5/55 (9%) Query: 208 SLDRWMKEAKKKGQE--AILQIPMQAFDESYNED-DSYTLKVTQTVQ--QLLNRL 257 S+ +W +E +K+ QE A ++ Q + E +D + + + ++ V+ ++ NR+ Sbjct: 86 SIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRI 140 >2jh3_A Ribosomal protein S2-related protein; CBIX, SAD phasing, structural genomics, chelatase super-family fold, 4Fe-4S iron-sulphur cluster; 1.9A {Deinococcus radiodurans} Length = 474 Score = 28.8 bits (64), Expect = 2.2 Identities = 7/52 (13%), Positives = 16/52 (30%) Query: 334 RDKIREKLKGLEEIARTTGQAIGVAVAFDESIEVISQWLQQEHVRDVSVVPL 385 +RE+ + + + S +S+W + +VP Sbjct: 161 AQALRERGQFAGVEVVLESREALTPESHAASAVPLSEWPSRVEAGQAVLVPF 212 >2ksr_A Neuronal acetylcholine receptor subunit beta-2; nicotinic acetylcholine receptors, transmembrane domain, HFI junction, cell membrane; NMR {Homo sapiens} Length = 164 Score = 27.6 bits (61), Expect = 5.3 Identities = 10/57 (17%), Positives = 23/57 (40%), Gaps = 2/57 (3%) Query: 21 SQIISRLGLFLLFCTFIVGLSI--YILISHAFVGTISEMIPYSVIREIAPIPLTIPL 75 S + +G +L+F +V SI + + + + + P +A + + L Sbjct: 85 SLDVPLVGKYLMFTMVLVTFSIVTSVCVLNVHHRSPTTHTPRGGGGYVAMVIDRLFL 141 >1yew_A Particulate methane monooxygenase, B subunit; membrane protein, copper, zinc, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus str} Length = 382 Score = 27.4 bits (61), Expect = 5.6 Identities = 16/55 (29%), Positives = 20/55 (36%), Gaps = 10/55 (18%) Query: 151 GREDTEVPAMDKNFCSNASGARIAIVVSGLGIS----------QTGTQRAINLLP 195 GR D V A D+ A I IVV + + Q GT R + L Sbjct: 190 GRADELVSATDRKVAMGFLAATILIVVMAMSSANSKYPITIPLQAGTMRGMKPLE 244 >1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A* Length = 396 Score = 27.5 bits (60), Expect = 6.3 Identities = 14/104 (13%), Positives = 35/104 (33%), Gaps = 4/104 (3%) Query: 250 VQQLLNRL--RYSLRR-GTGYFGVMNYRGAMLLSNKESAEVIFKEFAKRGLLFFDDGSSP 306 VQ L R+ +++R +GY +N + + + + Sbjct: 109 VQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQIDDVEIKDPSTYMVD 168 Query: 307 RNLTRVLAPKLNLPYMVADLYLDDQVDRDK-IREKLKGLEEIAR 349 +T + A + + D+ + I ++K L ++ + Sbjct: 169 EQITDLEADTFWCLTKLLEQITDNYIHGQPGILRQVKNLSQLVK 212 >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 1688 Score = 27.1 bits (59), Expect = 6.6 Identities = 9/23 (39%), Positives = 15/23 (65%) Query: 56 EMIPYSVIREIAPIPLTIPLNIE 78 E+ PY +++IAP L L++E Sbjct: 795 ELKPYKQVKQIAPAELEGLLDLE 817 >2j4o_A Mitogen-activated protein kinase kinase kinase 7-interacting protein 1; TGF-beta, pseudo-phosphatase, TAK1 binding protein, protein binding; 2.25A {Homo sapiens} PDB: 2pom_A 2pop_A Length = 401 Score = 27.2 bits (59), Expect = 7.1 Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 8/49 (16%) Query: 266 GYFGVMNYRGAMLLSNKESAEVIFKEFAKRGLLFFDDGSSPRNLTRVLA 314 G + + +N+E A +I EFAK+ S + + + Sbjct: 291 GLYKALEAAHGPGQANQEIAAMIDTEFAKQT--------SLDAVAQAVV 331 >1u04_A Argonaute, hypothetical protein PF0537; RNAI, silencing, PIWI, PAZ, RISC, slicer, RNAse H, hydrolase/gene regulation complex; 2.25A {Pyrococcus furiosus dsm 3638} SCOP: b.34.14.1 c.55.3.10 PDB: 1z25_A 1z26_A Length = 771 Score = 27.0 bits (59), Expect = 7.6 Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 1/61 (1%) Query: 316 KLNLPYMVADLYLDDQVDRDKIREKLKGLEEIARTTGQAIGVAVAFDESIEVISQWLQQE 375 K+N + +Y+ + D E K I R + +G+ + + I ++ L+ E Sbjct: 12 KINKKIIPDKIYVYR-LFNDPEEELQKEGYSIYRLAYENVGIVIDPENLIIATTKELEYE 70 Query: 376 H 376 Sbjct: 71 G 71 >3chx_A PMOB; membrane protein, copper, methane, beta barrel; 3.90A {Methylosinus trichosporium} Length = 392 Score = 26.7 bits (59), Expect = 9.1 Identities = 8/65 (12%), Positives = 22/65 (33%), Gaps = 10/65 (15%) Query: 151 GREDTEVPAMDKNFCSNASGARIAIVVSGLGIS----------QTGTQRAINLLPANITL 200 G+++ ++ D+ + I + G ++ Q G Q+ + + T Sbjct: 190 GKDEEQIGDDDRRVGAIVLAVTILATIIGYAVTNSTFPRTIPLQAGLQKPLTPIIEEGTA 249 Query: 201 AFASN 205 + Sbjct: 250 GVGPH 254 >1fft_A Ubiquinol oxidase; electron transport, cytochrome oxidase, membrane protein, oxidoreductase; HET: HEM HEO; 3.50A {Escherichia coli} SCOP: f.24.1.1 Length = 663 Score = 26.6 bits (59), Expect = 9.1 Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 4/45 (8%) Query: 25 SRLGLFLLFCTFIVGLS----IYILISHAFVGTISEMIPYSVIRE 65 S G+ + + I G + I+ L F G I I S + Sbjct: 589 SGAGIVIAAFSTIFGFAMIWHIWWLAIVGFAGMIITWIVKSFDED 633 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.317 0.134 0.373 Gapped Lambda K H 0.267 0.0599 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 3,222,232 Number of extensions: 149068 Number of successful extensions: 461 Number of sequences better than 10.0: 1 Number of HSP's gapped: 456 Number of HSP's successfully gapped: 20 Length of query: 396 Length of database: 5,693,230 Length adjustment: 94 Effective length of query: 302 Effective length of database: 3,414,294 Effective search space: 1031116788 Effective search space used: 1031116788 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 58 (26.4 bits)