RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780558|ref|YP_003064971.1| hypothetical protein
CLIBASIA_02225 [Candidatus Liberibacter asiaticus str. psy62]
         (396 letters)



>d2nlya1 c.6.2.7 (A:31-254) Hypothetical protein BH1492 {Bacillus
           halodurans [TaxId: 86665]}
          Length = 224

 Score =  167 bits (425), Expect = 1e-42
 Identities = 46/221 (20%), Positives = 96/221 (43%), Gaps = 5/221 (2%)

Query: 172 RIAIVVSGLGISQTGTQRAINLLPANITLAFASNGNSLDRWMKEAKKKGQEAILQIPMQA 231
           R AI++   G    G    +      +T+A         +  + A+  G E I+ +P++ 
Sbjct: 3   RAAIIIDDFGGDVKGVDDFLTG-EIPVTVAVMPFLEHSTKQAEIAQAAGLEVIVHMPLEP 61

Query: 232 FDESYNEDDSYTLKVTQTVQQLLNRLRYSLRRGTGYFGVMNYRGAMLLSNKESAEVIFKE 291
                +      +    +V ++ +R+R +        G+ N+ G+ ++ N++    I + 
Sbjct: 62  KKGKISWLGPSGITSNLSVGEVKSRVRKAFDDIPYAVGLNNHMGSKIVENEKIMRAILEV 121

Query: 292 FAKRGLLFFDDGSSPRNLTRVLAPKLNLPYMVADLYLD-DQVDRDKIREKLKGLEEIART 350
             ++     D G+SP +L   LA +L +PY    ++LD     R ++ + ++ L + A+ 
Sbjct: 122 VKEKNAFIIDSGTSPHSLIPQLAEELEVPYATRSIFLDNTHSSRKEVIKNMRKLAKKAKQ 181

Query: 351 TGQAIGVA---VAFDESIEVISQWLQQEHVRDVSVVPLSCL 388
             + IG+    V  DE+   I   L +     + +VP+S L
Sbjct: 182 GSEPIGIGHVGVRGDETYAGIRSMLDEFQAESIQLVPVSQL 222


>d1i2aa_ e.24.1.1 (A:) Ribosomal protein L1 {Archaeon Methanococcus
           jannaschii [TaxId: 2190]}
          Length = 212

 Score = 26.7 bits (58), Expect = 3.2
 Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 8/37 (21%)

Query: 332 VDRDKIREKLKGLEEIARTTGQAIGVAVAFDESIEVI 368
           +DR+ + + +K   E+A+           F +S E I
Sbjct: 1   MDREALLQAVKEARELAKPRN--------FTQSFEFI 29


>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4
           {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 311

 Score = 26.4 bits (57), Expect = 3.8
 Identities = 11/19 (57%), Positives = 12/19 (63%)

Query: 275 GAMLLSNKESAEVIFKEFA 293
           GAM LS   +AE I K FA
Sbjct: 292 GAMALSGVHAAEQILKHFA 310


>d2bsca1 b.2.3.5 (A:1-176) Fimbrial adhesin F17-AG lectin domain
           {Escherichia coli [TaxId: 562]}
          Length = 176

 Score = 26.2 bits (57), Expect = 4.4
 Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 15/92 (16%)

Query: 104 GQIQNDISGKTVVNKPTRSTSIDSLPTIEERLILGLSKKELLAKNKVGREDTEVPAMDKN 163
           G  +ND+     +   +R+ ++D+LP + +             +NK+G ++  V  + K 
Sbjct: 6   GSTENDVGPS--LGSYSRTHAMDNLPFVYD------------TRNKIGYQNANVWHISKG 51

Query: 164 FCSNASGARIAIVVSGL-GISQTGTQRAINLL 194
           FC    G     VV  L G S  G    + LL
Sbjct: 52  FCVGLDGKVDLPVVGSLDGQSIYGLTEEVGLL 83


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.134    0.373 

Gapped
Lambda     K      H
   0.267   0.0595    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,387,053
Number of extensions: 64380
Number of successful extensions: 175
Number of sequences better than 10.0: 1
Number of HSP's gapped: 171
Number of HSP's successfully gapped: 5
Length of query: 396
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 309
Effective length of database: 1,213,086
Effective search space: 374843574
Effective search space used: 374843574
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.9 bits)