RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780558|ref|YP_003064971.1| hypothetical protein CLIBASIA_02225 [Candidatus Liberibacter asiaticus str. psy62] (396 letters) >d2nlya1 c.6.2.7 (A:31-254) Hypothetical protein BH1492 {Bacillus halodurans [TaxId: 86665]} Length = 224 Score = 167 bits (425), Expect = 1e-42 Identities = 46/221 (20%), Positives = 96/221 (43%), Gaps = 5/221 (2%) Query: 172 RIAIVVSGLGISQTGTQRAINLLPANITLAFASNGNSLDRWMKEAKKKGQEAILQIPMQA 231 R AI++ G G + +T+A + + A+ G E I+ +P++ Sbjct: 3 RAAIIIDDFGGDVKGVDDFLTG-EIPVTVAVMPFLEHSTKQAEIAQAAGLEVIVHMPLEP 61 Query: 232 FDESYNEDDSYTLKVTQTVQQLLNRLRYSLRRGTGYFGVMNYRGAMLLSNKESAEVIFKE 291 + + +V ++ +R+R + G+ N+ G+ ++ N++ I + Sbjct: 62 KKGKISWLGPSGITSNLSVGEVKSRVRKAFDDIPYAVGLNNHMGSKIVENEKIMRAILEV 121 Query: 292 FAKRGLLFFDDGSSPRNLTRVLAPKLNLPYMVADLYLD-DQVDRDKIREKLKGLEEIART 350 ++ D G+SP +L LA +L +PY ++LD R ++ + ++ L + A+ Sbjct: 122 VKEKNAFIIDSGTSPHSLIPQLAEELEVPYATRSIFLDNTHSSRKEVIKNMRKLAKKAKQ 181 Query: 351 TGQAIGVA---VAFDESIEVISQWLQQEHVRDVSVVPLSCL 388 + IG+ V DE+ I L + + +VP+S L Sbjct: 182 GSEPIGIGHVGVRGDETYAGIRSMLDEFQAESIQLVPVSQL 222 >d1i2aa_ e.24.1.1 (A:) Ribosomal protein L1 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 212 Score = 26.7 bits (58), Expect = 3.2 Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 8/37 (21%) Query: 332 VDRDKIREKLKGLEEIARTTGQAIGVAVAFDESIEVI 368 +DR+ + + +K E+A+ F +S E I Sbjct: 1 MDREALLQAVKEARELAKPRN--------FTQSFEFI 29 >d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 311 Score = 26.4 bits (57), Expect = 3.8 Identities = 11/19 (57%), Positives = 12/19 (63%) Query: 275 GAMLLSNKESAEVIFKEFA 293 GAM LS +AE I K FA Sbjct: 292 GAMALSGVHAAEQILKHFA 310 >d2bsca1 b.2.3.5 (A:1-176) Fimbrial adhesin F17-AG lectin domain {Escherichia coli [TaxId: 562]} Length = 176 Score = 26.2 bits (57), Expect = 4.4 Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 15/92 (16%) Query: 104 GQIQNDISGKTVVNKPTRSTSIDSLPTIEERLILGLSKKELLAKNKVGREDTEVPAMDKN 163 G +ND+ + +R+ ++D+LP + + +NK+G ++ V + K Sbjct: 6 GSTENDVGPS--LGSYSRTHAMDNLPFVYD------------TRNKIGYQNANVWHISKG 51 Query: 164 FCSNASGARIAIVVSGL-GISQTGTQRAINLL 194 FC G VV L G S G + LL Sbjct: 52 FCVGLDGKVDLPVVGSLDGQSIYGLTEEVGLL 83 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.317 0.134 0.373 Gapped Lambda K H 0.267 0.0595 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 1,387,053 Number of extensions: 64380 Number of successful extensions: 175 Number of sequences better than 10.0: 1 Number of HSP's gapped: 171 Number of HSP's successfully gapped: 5 Length of query: 396 Length of database: 2,407,596 Length adjustment: 87 Effective length of query: 309 Effective length of database: 1,213,086 Effective search space: 374843574 Effective search space used: 374843574 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 54 (24.9 bits)