BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780558|ref|YP_003064971.1| hypothetical protein
CLIBASIA_02225 [Candidatus Liberibacter asiaticus str. psy62]
         (396 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780558|ref|YP_003064971.1| hypothetical protein CLIBASIA_02225 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 396

 Score =  814 bits (2102), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/396 (100%), Positives = 396/396 (100%)

Query: 1   MSIDLNHPLRKKTPKRKSFYSQIISRLGLFLLFCTFIVGLSIYILISHAFVGTISEMIPY 60
           MSIDLNHPLRKKTPKRKSFYSQIISRLGLFLLFCTFIVGLSIYILISHAFVGTISEMIPY
Sbjct: 1   MSIDLNHPLRKKTPKRKSFYSQIISRLGLFLLFCTFIVGLSIYILISHAFVGTISEMIPY 60

Query: 61  SVIREIAPIPLTIPLNIEDKQSPSKRDNNTVCNQLKNDSSQHDGQIQNDISGKTVVNKPT 120
           SVIREIAPIPLTIPLNIEDKQSPSKRDNNTVCNQLKNDSSQHDGQIQNDISGKTVVNKPT
Sbjct: 61  SVIREIAPIPLTIPLNIEDKQSPSKRDNNTVCNQLKNDSSQHDGQIQNDISGKTVVNKPT 120

Query: 121 RSTSIDSLPTIEERLILGLSKKELLAKNKVGREDTEVPAMDKNFCSNASGARIAIVVSGL 180
           RSTSIDSLPTIEERLILGLSKKELLAKNKVGREDTEVPAMDKNFCSNASGARIAIVVSGL
Sbjct: 121 RSTSIDSLPTIEERLILGLSKKELLAKNKVGREDTEVPAMDKNFCSNASGARIAIVVSGL 180

Query: 181 GISQTGTQRAINLLPANITLAFASNGNSLDRWMKEAKKKGQEAILQIPMQAFDESYNEDD 240
           GISQTGTQRAINLLPANITLAFASNGNSLDRWMKEAKKKGQEAILQIPMQAFDESYNEDD
Sbjct: 181 GISQTGTQRAINLLPANITLAFASNGNSLDRWMKEAKKKGQEAILQIPMQAFDESYNEDD 240

Query: 241 SYTLKVTQTVQQLLNRLRYSLRRGTGYFGVMNYRGAMLLSNKESAEVIFKEFAKRGLLFF 300
           SYTLKVTQTVQQLLNRLRYSLRRGTGYFGVMNYRGAMLLSNKESAEVIFKEFAKRGLLFF
Sbjct: 241 SYTLKVTQTVQQLLNRLRYSLRRGTGYFGVMNYRGAMLLSNKESAEVIFKEFAKRGLLFF 300

Query: 301 DDGSSPRNLTRVLAPKLNLPYMVADLYLDDQVDRDKIREKLKGLEEIARTTGQAIGVAVA 360
           DDGSSPRNLTRVLAPKLNLPYMVADLYLDDQVDRDKIREKLKGLEEIARTTGQAIGVAVA
Sbjct: 301 DDGSSPRNLTRVLAPKLNLPYMVADLYLDDQVDRDKIREKLKGLEEIARTTGQAIGVAVA 360

Query: 361 FDESIEVISQWLQQEHVRDVSVVPLSCLAKLSSPSS 396
           FDESIEVISQWLQQEHVRDVSVVPLSCLAKLSSPSS
Sbjct: 361 FDESIEVISQWLQQEHVRDVSVVPLSCLAKLSSPSS 396


>gi|254781165|ref|YP_003065578.1| pyridoxamine 5'-phosphate oxidase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 201

 Score = 25.0 bits (53), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 11/40 (27%), Positives = 20/40 (50%)

Query: 287 VIFKEFAKRGLLFFDDGSSPRNLTRVLAPKLNLPYMVADL 326
           V+ K F + G +F+ +  SP+    +  PK +L +    L
Sbjct: 50  VLIKHFDQEGFVFYTNSQSPKGKEILENPKASLCFHWKSL 89


>gi|254781098|ref|YP_003065511.1| cell division protein FtsW peptidoglycan synthesis [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 385

 Score = 24.3 bits (51), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 11/32 (34%), Positives = 18/32 (56%)

Query: 36  FIVGLSIYILISHAFVGTISEMIPYSVIREIA 67
           FI G+S   ++  AF+G +S  I Y  +  +A
Sbjct: 184 FITGISWLWIVVFAFLGLMSLFIAYQTMPHVA 215


>gi|254780898|ref|YP_003065311.1| hypothetical protein CLIBASIA_03975 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 207

 Score = 23.5 bits (49), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 5/50 (10%)

Query: 19 FYSQIISRLGLFLLFCTFIVGLSIYILISHAFVGTISEMIPYSVIREIAP 68
          FY +I+  LG+ +L C   V L +Y L    F      ++P+ + R   P
Sbjct: 14 FYIKIL--LGVLVL-CA--VSLGLYFLTITTFTQNFHAVVPHEIYRSAQP 58


>gi|254780725|ref|YP_003065138.1| response regulator receiver protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 427

 Score = 23.1 bits (48), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 15/49 (30%), Positives = 21/49 (42%)

Query: 338 REKLKGLEEIARTTGQAIGVAVAFDESIEVISQWLQQEHVRDVSVVPLS 386
           RE L  LE +A        V V  D +   + + L   HV +  + PLS
Sbjct: 90  REVLSALEPLAEVCDSGTKVIVIGDTNDVSLYRALISNHVSEYLIEPLS 138


>gi|254780425|ref|YP_003064838.1| apolipoprotein N-acyltransferase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 518

 Score = 22.7 bits (47), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 11/32 (34%), Positives = 21/32 (65%)

Query: 114 TVVNKPTRSTSIDSLPTIEERLILGLSKKELL 145
           ++V++P+    I S+  I + LI+G  +KEL+
Sbjct: 295 SIVDQPSILKKIASVLKINQLLIVGSMRKELV 326


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.317    0.134    0.373 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 243,858
Number of Sequences: 1233
Number of extensions: 10062
Number of successful extensions: 39
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 33
Number of HSP's gapped (non-prelim): 8
length of query: 396
length of database: 328,796
effective HSP length: 76
effective length of query: 320
effective length of database: 235,088
effective search space: 75228160
effective search space used: 75228160
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 39 (19.6 bits)