RPSBLAST alignment for GI: 254780559 and conserved domain: TIGR01257
>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. Length = 2272
Score = 85.8 bits (212), Expect = 9e-18
Identities = 58/192 (30%), Positives = 103/192 (53%), Gaps = 7/192 (3%)
Query: 31 LGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQN-HTRSSPSKRPLSILFQENNLFSHLTVW 89
LG +GAGK+T LS++ G PT G++ + G++ T ++ L + Q N LF HLTV
Sbjct: 962 LGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVA 1021
Query: 90 QNIALGIAPNLRLDHYQHAQVKQ--MLEKVFLEDFFNRFPSQMSGGQRQRVALARCLIRQ 147
++I L+ ++ AQ++ MLE L N +SGG ++++++A +
Sbjct: 1022 EHILF--YAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGD 1079
Query: 148 KPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLEDSMQIATRFIVIAGGQ 207
+++LDEP + DP R I LL + R T++M +H+++++ + R +I+ G+
Sbjct: 1080 AKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGR--TIIMSTHHMDEADLLGDRIAIISQGR 1137
Query: 208 IVYDGDPDRLMN 219
+ G P L N
Sbjct: 1138 LYCSGTPLFLKN 1149