RPSBLAST alignment for GI: 254780559 and conserved domain: TIGR01842

>gnl|CDD|162555 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. Length = 544

 Score = 80.5 bits (199), Expect = 4e-16
 Identities = 61/189 (32%), Positives = 93/189 (49%), Gaps = 35/189 (18%)

Query: 20  FQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSKRPLSI--LF 77
           F++   E + I+GPSG+GKSTL  L+ G   PT GS+ L+G +  +         I  L 
Sbjct: 339 FRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLP 398

Query: 78  QENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFL---EDFFNRFP------- 127
           Q+  LF   TV +NIA       R    ++A  ++++E   L    +   R P       
Sbjct: 399 QDVELFPG-TVAENIA-------RFG--ENADPEKIIEAAKLAGVHELILRLPDGYDTVI 448

Query: 128 ----SQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDP----ALRHEILGLLKQVCDER 179
               + +SGGQRQR+ALAR L     +++LDEP +  D     AL + I  L       R
Sbjct: 449 GPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKA-----R 503

Query: 180 QLTLLMISH 188
            +T+++I+H
Sbjct: 504 GITVVVITH 512