RPSBLAST alignment for GI: 254780559 and conserved domain: TIGR03375
>gnl|CDD|163239 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. Length = 694
Score = 135 bits (343), Expect = 7e-33
Identities = 73/216 (33%), Positives = 112/216 (51%), Gaps = 25/216 (11%)
Query: 20 FQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPS--KRPLSILF 77
+ E++ I+G G+GKSTLL L+ G PT GS+ L+G + + P+ +R + +
Sbjct: 486 LTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVP 545
Query: 78 QENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFPS--------- 128
Q+ LF + T+ NIALG AP + ++ + E + +F R P
Sbjct: 546 QDPRLF-YGTLRDNIALG-AP-----YADDEEILRAAELAGVTEFVRRHPDGLDMQIGER 598
Query: 129 --QMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMI 186
+SGGQRQ VALAR L+R PILLLDEP + D LK+ + TL+++
Sbjct: 599 GRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGK--TLVLV 656
Query: 187 SHNLEDSM-QIATRFIVIAGGQIVYDGDPDRLMNGL 221
+H S+ + R IV+ G+IV DG D+++ L
Sbjct: 657 THRT--SLLDLVDRIIVMDNGRIVADGPKDQVLEAL 690