RPSBLAST alignment for GI: 254780559 and conserved domain: cd03224
>gnl|CDD|72983 cd03224, ABC_TM1139_LivF_branched, LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.. Length = 222
Score = 146 bits (371), Expect = 4e-36
Identities = 64/209 (30%), Positives = 111/209 (53%), Gaps = 15/209 (7%)
Query: 19 DFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSKRP---LSI 75
V + E + +LG +GAGK+TLL + G P GSI +G++ T P +R +
Sbjct: 20 SLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGY 79
Query: 76 LFQENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVF-----LEDFFNRFPSQM 130
+ + +F LTV +N+ LG R A+ K LE+V+ L++ + +
Sbjct: 80 VPEGRRIFPELTVEENLLLGAYARRR------AKRKARLERVYELFPRLKERRKQLAGTL 133
Query: 131 SGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNL 190
SGG++Q +A+AR L+ + +LLLDEP P + EI ++++ DE +T+L++ N
Sbjct: 134 SGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDE-GVTILLVEQNA 192
Query: 191 EDSMQIATRFIVIAGGQIVYDGDPDRLMN 219
+++IA R V+ G++V +G L+
Sbjct: 193 RFALEIADRAYVLERGRVVLEGTAAELLA 221