RPSBLAST alignment for GI: 254780559 and conserved domain: cd03237

>gnl|CDD|72996 cd03237, ABC_RNaseL_inhibitor_domain2, The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.. Length = 246
 Score = 81.1 bits (200), Expect = 3e-16
 Identities = 57/210 (27%), Positives = 99/210 (47%), Gaps = 23/210 (10%)

Query: 22  VNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSKRPLSILFQENN 81
           ++++E I ILGP+G GK+T + ++AG   P  G I +        + S +P     Q   
Sbjct: 22  ISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIE-----LDTVSYKP-----QYIK 71

Query: 82  LFSHLTVWQNIALGIAPNLRLDHYQHAQVK-QMLEKVFLEDFFNRFPSQMSGGQRQRVAL 140
                TV +++   I      D Y H   K ++ + + +E   +R   ++SGG+ QRVA+
Sbjct: 72  ADYEGTV-RDLLSSITK----DFYTHPYFKTEIAKPLQIEQILDREVPELSGGELQRVAI 126

Query: 141 ARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLEDSMQIATRF 200
           A CL +   I LLDEP A  D   R     ++++  +  + T  ++ H++     +A R 
Sbjct: 127 AACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRL 186

Query: 201 IVIAGGQIVYDGDPDRLMNGLIPESTLLGI 230
                  IV++G+P        P+S   G+
Sbjct: 187 -------IVFEGEPSVNGVANPPQSLRSGM 209