RPSBLAST alignment for GI: 254780559 and conserved domain: cd03237
>gnl|CDD|72996 cd03237, ABC_RNaseL_inhibitor_domain2, The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.. Length = 246
Score = 81.1 bits (200), Expect = 3e-16
Identities = 57/210 (27%), Positives = 99/210 (47%), Gaps = 23/210 (10%)
Query: 22 VNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSKRPLSILFQENN 81
++++E I ILGP+G GK+T + ++AG P G I + + S +P Q
Sbjct: 22 ISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIE-----LDTVSYKP-----QYIK 71
Query: 82 LFSHLTVWQNIALGIAPNLRLDHYQHAQVK-QMLEKVFLEDFFNRFPSQMSGGQRQRVAL 140
TV +++ I D Y H K ++ + + +E +R ++SGG+ QRVA+
Sbjct: 72 ADYEGTV-RDLLSSITK----DFYTHPYFKTEIAKPLQIEQILDREVPELSGGELQRVAI 126
Query: 141 ARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLEDSMQIATRF 200
A CL + I LLDEP A D R ++++ + + T ++ H++ +A R
Sbjct: 127 AACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRL 186
Query: 201 IVIAGGQIVYDGDPDRLMNGLIPESTLLGI 230
IV++G+P P+S G+
Sbjct: 187 -------IVFEGEPSVNGVANPPQSLRSGM 209