RPSBLAST alignment for GI: 254780559 and conserved domain: cd03240

>gnl|CDD|72999 cd03240, ABC_Rad50, The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.. Length = 204
 Score = 46.7 bits (111), Expect = 5e-06
 Identities = 39/194 (20%), Positives = 71/194 (36%), Gaps = 27/194 (13%)

Query: 11  YDNLKMQFDFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSK 70
           ++  +++F   +      +I+G +GAGK+T++      KY   G +  N         + 
Sbjct: 13  HERSEIEFFSPLT-----LIVGQNGAGKTTIIE---ALKYALTGELPPN-----SKGGAH 59

Query: 71  RPLSILFQENNLFSHLTVWQNIALGIAPNLRLDHYQHA-QVKQMLEKVFLEDFFNRFPSQ 129
            P  I   E      L               L   ++     Q      L D       +
Sbjct: 60  DPKLIREGEVRAQVKLAFENANGKKYTITRSLAILENVIFCHQGESNWPLLDM----RGR 115

Query: 130 MSGGQRQ------RVALARCLIRQKPILLLDEPFAVFDPA-LRHEILGLLKQVCDERQLT 182
            SGG++       R+ALA        IL LDEP    D   +   +  ++++   ++   
Sbjct: 116 CSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQ 175

Query: 183 LLMISH--NLEDSM 194
           L++I+H   L D+ 
Sbjct: 176 LIVITHDEELVDAA 189