RPSBLAST alignment for GI: 254780559 and conserved domain: cd03240
>gnl|CDD|72999 cd03240, ABC_Rad50, The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.. Length = 204
Score = 46.7 bits (111), Expect = 5e-06
Identities = 39/194 (20%), Positives = 71/194 (36%), Gaps = 27/194 (13%)
Query: 11 YDNLKMQFDFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSK 70
++ +++F + +I+G +GAGK+T++ KY G + N +
Sbjct: 13 HERSEIEFFSPLT-----LIVGQNGAGKTTIIE---ALKYALTGELPPN-----SKGGAH 59
Query: 71 RPLSILFQENNLFSHLTVWQNIALGIAPNLRLDHYQHA-QVKQMLEKVFLEDFFNRFPSQ 129
P I E L L ++ Q L D +
Sbjct: 60 DPKLIREGEVRAQVKLAFENANGKKYTITRSLAILENVIFCHQGESNWPLLDM----RGR 115
Query: 130 MSGGQRQ------RVALARCLIRQKPILLLDEPFAVFDPA-LRHEILGLLKQVCDERQLT 182
SGG++ R+ALA IL LDEP D + + ++++ ++
Sbjct: 116 CSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQ 175
Query: 183 LLMISH--NLEDSM 194
L++I+H L D+
Sbjct: 176 LIVITHDEELVDAA 189