HHsearch alignment for GI: 254780561 and conserved domain: COG0687
>COG0687 PotD Spermidine/putrescine-binding periplasmic protein [Amino acid transport and metabolism].
Probab=100.00 E-value=1.6e-41 Score=260.36 Aligned_cols=288 Identities=17% Similarity=0.244 Sum_probs=212.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCC--CCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHH
Q ss_conf 90279999999999999986146--7423488599997887785122338899999988488799997288689997887
Q gi|254780561|r 1 MKKFARIVVGIMMITGVISYCTL--DGLPAKPVLTVYTYNSFVADEGAGPKIKQAFERKCNCELKLIGLSDGVALLNKLR 78 (338)
Q Consensus 1 MKk~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~v~~~~~~~~~~~~~~~i~~~Fek~~gikV~~~~~~~~~~~~~~~~ 78 (338)
T Consensus 2 ~k~~~~~~-~~~~~~~~~a~~~~~~~a~a~~~~l~v~~w~gy~~-----~~~~~~F~k~tGi~V~~~~~~sne~~~ak~~ 75 (363)
T COG0687 2 MKKLSRRS-FLALAALALAALAGAAAAAAEGKTLNVYNWGGYID-----PALLKPFEKETGIKVVYDTFDSNEEMLAKLK 75 (363)
T ss_pred CCHHHHHH-HHHHHHHHHHHHHCHHHHHHCCCEEEEECCCCCCC-----HHHHHHHHHHHCCEEEEECCCCHHHHHHHHH
T ss_conf 41466667-89999999998600045662578599964787557-----7889989999899799953898699999998
Q ss_pred HHHCCCCCEEEECCCHHHHHHHHHHHCCCCCCCCHHH---------CCCC-CCCCCCCCCCEEEEEEHHHHCCCCCC--C
Q ss_conf 5312664101101333789998875212613677000---------2100-01243211532431000110011124--5
Q gi|254780561|r 79 MEGENSAADIVLGFDNNLIDLARKTGLFAKSNIDASQ---------LKLP-IKWDDDIFVPYDYGYLAFIYDKRQIT--Q 146 (338)
Q Consensus 79 a~~~~~~~Dv~~~~~~~~~~~~~~~~l~~~~~~~~~~---------~~~~-~~~~~~~~~~~~~~~~~~~y~~~~~~--~ 146 (338)
T Consensus 76 ~g~~~--~Dvv~~-s~~~~~~~~~~gll~~lD~skl~n~~~l~~~~~~~~~~d~g~~y~vPy~~g~t~i~Yn~~~~~~~~ 152 (363)
T COG0687 76 AGGGG--YDVVVP-SGYFVARLIKEGLLQPLDKSKLPNWKNLDPEFLNPPKFDPGNKYSVPYFWGTTGIAYNTDKVKDAP 152 (363)
T ss_pred HCCCC--CCEEEC-CHHHHHHHHHCCCCCCCCHHHCCCHHHCCHHHHCCCCCCCCCEECEEEEEEEEEEEEECCCCCCCC
T ss_conf 08999--887971-888999998667567589666648211698783577678888603167886469999800058999
Q ss_pred CCCCHHHHCCCC----CCCE-EEEEECCCCCCHHHHHHHHHHHCCC------CHHHHHHHHHHCCCEEECCCHHHHHHHH
Q ss_conf 876456521200----0682-8985047653036789999871773------1378987776288468308478988862
Q gi|254780561|r 147 PPKNFDELINST----KPWK-IIYQDPRTSTLGLGLLLWIQKIYGD------NSAQVWKKIATKTATVTKGWTESYGFFL 215 (338)
Q Consensus 147 ~p~s~~~l~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (338)
T Consensus 153 ~~~sW~~l~d~~~~~~~k~~~~~~~d~~~~~~~~al~~lg~~~n~~~~~~~~~a~~~L~~~kp-~~~~~~~~~~~~~~l~ 231 (363)
T COG0687 153 PPTSWADLFDPEKFPGLKGKGVALLDDDREVFGAALALLGKSPNTTDPEDLKKAFDLLDKLKP-VNVYWFDGSQYVQLLA 231 (363)
T ss_pred CCCCHHHHHCCHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCC-CEEEEECCHHHHHHHH
T ss_conf 998899983842002232575301366057899999971899788998899999999997278-5089963627888986
Q ss_pred CCCCCEEEEECCHHHHHHHHHCCCCEEEEECCCCEEEEEEEEEEECCCCCHHHHHHHHHHHCCHHHHHHHHHCCCEEECC
Q ss_conf 25865699950449999985079973788316980888864243378999899999999963999999988504505055
Q gi|254780561|r 216 KGESDFVLSYSTSPGFYLLNYGQDDYVAALFSEGHYLQIEVAAQLVRSKQPQLAQEFMQFMISPSFQRILPTTNWMYPVV 295 (338)
Q Consensus 216 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eG~~~~~~~~~i~k~a~n~~~A~~Fi~flls~e~Q~~~a~~~~~~P~~ 295 (338)
T Consensus 232 ~Gev~~a~~w~g~~~~~~~~~~~~~i~~~~p~eG~~~w~D~~~ipk~a~n~~~A~~fInf~~~pe~~a~~~~~~~y~~~n 311 (363)
T COG0687 232 NGEVVLAMGWSGDAAAAKAAKNGAPIEFVIPKEGSILWFDNLAIPKGAKNVDAAYKFINFLLDPEVAAKLAEFVGYAPPN 311 (363)
T ss_pred CCCEEEEEEECHHHHHHHHCCCCCEEEEECCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCC
T ss_conf 69978999777789998625589805773478873478788998799999899999999851989999998732678888
Q ss_pred CCC
Q ss_conf 765
Q gi|254780561|r 296 DIS 298 (338)
Q Consensus 296 ~~~ 298 (338)
T Consensus 312 ~~a 314 (363)
T COG0687 312 KAA 314 (363)
T ss_pred HHH
T ss_conf 777