HHsearch alignment for GI: 254780561 and conserved domain: COG1653
>COG1653 UgpB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism].
Probab=99.82 E-value=8.1e-18 Score=122.10 Aligned_cols=297 Identities=19% Similarity=0.215 Sum_probs=160.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCCC-CEEEEEECCCCCCCHHHHHHHHHHHHHHH-CCEEEEEECCCHHHHHHHHH
Q ss_conf 90279999999999999986146742348-85999978877851223388999999884-88799997288689997887
Q gi|254780561|r 1 MKKFARIVVGIMMITGVISYCTLDGLPAK-PVLTVYTYNSFVADEGAGPKIKQAFERKC-NCELKLIGLSDGVALLNKLR 78 (338)
Q Consensus 1 MKk~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~v~~~~~~~~~~~~~~~i~~~Fek~~-gikV~~~~~~~~~~~~~~~~ 78 (338)
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~f~~~~p~ikV~~~~~~~~-~~~~~l~ 79 (433)
T COG1653 1 LKKISKLLLLLLAAALGLAACGSAAASAAGVTITFWHSWTGGEEADALEELIKEFEKENPGIKVKVVNVPGD-DYLQKLL 79 (433)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCHH-HHHHHHH
T ss_conf 921799999999999999999743024557439999833787315899999999997779847999856758-8999999
Q ss_pred HHH-CCCCCEEEECCCHHHHHHHHHHHC-CCCCCCCH----H-------HCCCCCCCCCCCCCCEEEEEEHHHHCCCCCC
Q ss_conf 531-266410110133378999887521-26136770----0-------0210001243211532431000110011124
Q gi|254780561|r 79 MEG-ENSAADIVLGFDNNLIDLARKTGL-FAKSNIDA----S-------QLKLPIKWDDDIFVPYDYGYLAFIYDKRQIT 145 (338)
Q Consensus 79 a~~-~~~~~Dv~~~~~~~~~~~~~~~~l-~~~~~~~~----~-------~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~ 145 (338)
T Consensus 80 ~~~~ag~~pDv~~~~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~dG~~y~~P~~~~~~~~~ynkd~~~ 158 (433)
T COG1653 80 TALASGDAPDVVQLDP-EWLAAFAKAGGLLEDLTDLINPKLDLSDFPPALLDTTTYDGKLYGVPFNSSTPALFYNKDLFK 158 (433)
T ss_pred HHHHCCCCCEEEEECC-HHHHHHHHHCCCCCCCCCCCCCCHHHHHCCHHHHHHEEECCEEEEEEEECCCCEEEEEHHHHH
T ss_conf 9985799981999773-768999972676566641001230244304776742468986899984324756998789999
Q ss_pred ----CC-CCCHHHHCCCCC----CC--EEEEEECCC---CCCHHHHHHHHHH-------HCC------C----CHHHHHH
Q ss_conf ----58-764565212000----68--289850476---5303678999987-------177------3----1378987
Q gi|254780561|r 146 ----QP-PKNFDELINSTK----PW--KIIYQDPRT---STLGLGLLLWIQK-------IYG------D----NSAQVWK 194 (338)
Q Consensus 146 ----~~-p~s~~~l~~~~~----~~--~~~~~~~~~---~~~~~~~~~~~~~-------~~~------~----~~~~~~~ 194 (338)
T Consensus 159 ~aG~~~pp~tw~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (433)
T COG1653 159 KAGLKPPPKTWDELLAAAKKLKEKGGDVYGIAGGGGWQGEDLFFTFALFLGGAGGGFLDKDGGEAFLNDPEAVEALEFLK 238 (433)
T ss_pred HCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 76999999998999999999986047866400255454323299999998505875225777610479989999999999
Q ss_pred HHHHCCC-E---EECCCHHHHH-HHHCCCCCEEEEECCHHHHHHHHHC-CCCEEEEECCC----C---EEEEEEEEEEEC
Q ss_conf 7762884-6---8308478988-8622586569995044999998507-99737883169----8---088886424337
Q gi|254780561|r 195 KIATKTA-T---VTKGWTESYG-FFLKGESDFVLSYSTSPGFYLLNYG-QDDYVAALFSE----G---HYLQIEVAAQLV 261 (338)
Q Consensus 195 ~~~~~~~-~---~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~e----G---~~~~~~~~~i~k 261 (338)
T Consensus 239 ~l~~~~~~~~~~~~~~~~~~~~~~f~~G~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~i~~ 318 (433)
T COG1653 239 DLYKKGLLPKGASGYGWDDAGALAFGSGKVAMTIDGTWAIGYFKKAAGPKFDIGVAPLPAGPGGGGAAGGVGGGGLGVSK 318 (433)
T ss_pred HHHHCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCEEEEEEC
T ss_conf 99862666767665357677554200364689970557766665134545664688268788878752211553799974
Q ss_pred CCCC-HHHHHHHHHHHCCHHHHHH-HHHCCCEEECCCCCC
Q ss_conf 8999-8999999999639999999-885045050557658
Q gi|254780561|r 262 RSKQ-PQLAQEFMQFMISPSFQRI-LPTTNWMYPVVDISM 299 (338)
Q Consensus 262 ~a~n-~~~A~~Fi~flls~e~Q~~-~a~~~~~~P~~~~~~ 299 (338)
T Consensus 319 ~~~~~~~aA~~fi~~l~s~e~q~~~~~~~~g~~P~~~~~~ 358 (433)
T COG1653 319 KSKKHKEAAWKFLEFLTSPEAQAELLAKVTGGLPVRKSAY 358 (433)
T ss_pred CCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCHHHH
T ss_conf 8986699999999997690878888774148787625543