HHsearch alignment for GI: 254780561 and conserved domain: COG1653

>COG1653 UgpB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism].
Probab=99.82  E-value=8.1e-18  Score=122.10  Aligned_cols=297  Identities=19%  Similarity=0.215  Sum_probs=160.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHCCCCCCCC-CEEEEEECCCCCCCHHHHHHHHHHHHHHH-CCEEEEEECCCHHHHHHHHH
Q ss_conf             90279999999999999986146742348-85999978877851223388999999884-88799997288689997887
Q gi|254780561|r    1 MKKFARIVVGIMMITGVISYCTLDGLPAK-PVLTVYTYNSFVADEGAGPKIKQAFERKC-NCELKLIGLSDGVALLNKLR   78 (338)
Q Consensus         1 MKk~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~v~~~~~~~~~~~~~~~i~~~Fek~~-gikV~~~~~~~~~~~~~~~~   78 (338)
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~f~~~~p~ikV~~~~~~~~-~~~~~l~   79 (433)
T COG1653           1 LKKISKLLLLLLAAALGLAACGSAAASAAGVTITFWHSWTGGEEADALEELIKEFEKENPGIKVKVVNVPGD-DYLQKLL   79 (433)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCHH-HHHHHHH
T ss_conf             921799999999999999999743024557439999833787315899999999997779847999856758-8999999


Q ss_pred             HHH-CCCCCEEEECCCHHHHHHHHHHHC-CCCCCCCH----H-------HCCCCCCCCCCCCCCEEEEEEHHHHCCCCCC
Q ss_conf             531-266410110133378999887521-26136770----0-------0210001243211532431000110011124
Q gi|254780561|r   79 MEG-ENSAADIVLGFDNNLIDLARKTGL-FAKSNIDA----S-------QLKLPIKWDDDIFVPYDYGYLAFIYDKRQIT  145 (338)
Q Consensus        79 a~~-~~~~~Dv~~~~~~~~~~~~~~~~l-~~~~~~~~----~-------~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~  145 (338)
T Consensus        80 ~~~~ag~~pDv~~~~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~dG~~y~~P~~~~~~~~~ynkd~~~  158 (433)
T COG1653          80 TALASGDAPDVVQLDP-EWLAAFAKAGGLLEDLTDLINPKLDLSDFPPALLDTTTYDGKLYGVPFNSSTPALFYNKDLFK  158 (433)
T ss_pred             HHHHCCCCCEEEEECC-HHHHHHHHHCCCCCCCCCCCCCCHHHHHCCHHHHHHEEECCEEEEEEEECCCCEEEEEHHHHH
T ss_conf             9985799981999773-768999972676566641001230244304776742468986899984324756998789999


Q ss_pred             ----CC-CCCHHHHCCCCC----CC--EEEEEECCC---CCCHHHHHHHHHH-------HCC------C----CHHHHHH
Q ss_conf             ----58-764565212000----68--289850476---5303678999987-------177------3----1378987
Q gi|254780561|r  146 ----QP-PKNFDELINSTK----PW--KIIYQDPRT---STLGLGLLLWIQK-------IYG------D----NSAQVWK  194 (338)
Q Consensus       146 ----~~-p~s~~~l~~~~~----~~--~~~~~~~~~---~~~~~~~~~~~~~-------~~~------~----~~~~~~~  194 (338)
T Consensus       159 ~aG~~~pp~tw~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (433)
T COG1653         159 KAGLKPPPKTWDELLAAAKKLKEKGGDVYGIAGGGGWQGEDLFFTFALFLGGAGGGFLDKDGGEAFLNDPEAVEALEFLK  238 (433)
T ss_pred             HCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf             76999999998999999999986047866400255454323299999998505875225777610479989999999999


Q ss_pred             HHHHCCC-E---EECCCHHHHH-HHHCCCCCEEEEECCHHHHHHHHHC-CCCEEEEECCC----C---EEEEEEEEEEEC
Q ss_conf             7762884-6---8308478988-8622586569995044999998507-99737883169----8---088886424337
Q gi|254780561|r  195 KIATKTA-T---VTKGWTESYG-FFLKGESDFVLSYSTSPGFYLLNYG-QDDYVAALFSE----G---HYLQIEVAAQLV  261 (338)
Q Consensus       195 ~~~~~~~-~---~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~e----G---~~~~~~~~~i~k  261 (338)
T Consensus       239 ~l~~~~~~~~~~~~~~~~~~~~~~f~~G~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~i~~  318 (433)
T COG1653         239 DLYKKGLLPKGASGYGWDDAGALAFGSGKVAMTIDGTWAIGYFKKAAGPKFDIGVAPLPAGPGGGGAAGGVGGGGLGVSK  318 (433)
T ss_pred             HHHHCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCEEEEEEC
T ss_conf             99862666767665357677554200364689970557766665134545664688268788878752211553799974


Q ss_pred             CCCC-HHHHHHHHHHHCCHHHHHH-HHHCCCEEECCCCCC
Q ss_conf             8999-8999999999639999999-885045050557658
Q gi|254780561|r  262 RSKQ-PQLAQEFMQFMISPSFQRI-LPTTNWMYPVVDISM  299 (338)
Q Consensus       262 ~a~n-~~~A~~Fi~flls~e~Q~~-~a~~~~~~P~~~~~~  299 (338)
T Consensus       319 ~~~~~~~aA~~fi~~l~s~e~q~~~~~~~~g~~P~~~~~~  358 (433)
T COG1653         319 KSKKHKEAAWKFLEFLTSPEAQAELLAKVTGGLPVRKSAY  358 (433)
T ss_pred             CCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCHHHH
T ss_conf             8986699999999997690878888774148787625543