HHsearch alignment for GI: 254780561 and conserved domain: COG4143
>COG4143 TbpA ABC-type thiamine transport system, periplasmic component [Coenzyme metabolism].
Probab=100.00 E-value=0 Score=348.73 Aligned_cols=333 Identities=49% Similarity=0.922 Sum_probs=301.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHH
Q ss_conf 90279999999999999986146742348859999788778512233889999998848879999728868999788753
Q gi|254780561|r 1 MKKFARIVVGIMMITGVISYCTLDGLPAKPVLTVYTYNSFVADEGAGPKIKQAFERKCNCELKLIGLSDGVALLNKLRME 80 (338)
Q Consensus 1 MKk~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~i~~~Fek~~gikV~~~~~~~~~~~~~~~~a~ 80 (338)
T Consensus 1 m~~~l~~~~--~~al-l~~~~~~-a~~~t~~LtVytydSF~~ewg~Gp~vk~~FE~~~~~~v~fV~~~d~v~llnRl~le 76 (336)
T COG4143 1 MRRLLRALI--GLAL-LVSAALG-AQAATPTLTVYTYDSFASEWGPGPKVKKAFEAEYGCKVNFVALGDGVELLNRLILE 76 (336)
T ss_pred CHHHHHHHH--HHHH-HHHHHHH-HHHCCCEEEEEEEEEEECCCCCCHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHC
T ss_conf 902499999--9999-9998657-76348538999976342256885789999999859528999707589999999970
Q ss_pred HCCCCCEEEECCCHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCCC-CCEEEEEEHHHHCCCCCCCCCCCHHHHCCCCC
Q ss_conf 12664101101333789998875212613677000210001243211-53243100011001112458764565212000
Q gi|254780561|r 81 GENSAADIVLGFDNNLIDLARKTGLFAKSNIDASQLKLPIKWDDDIF-VPYDYGYLAFIYDKRQITQPPKNFDELINSTK 159 (338)
Q Consensus 81 ~~~~~~Dv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~y~~~~~~~~p~s~~~l~~~~~ 159 (338)
T Consensus 77 g~~~~ADvvvGldn~~l~~A~~~~lf~~~~~d~~~~~vp~~~~~d~f~~P~DyGy~a~vYd~~~~~~ppksL~dL~~~~y 156 (336)
T COG4143 77 GKNPKADVVVGLDNNLLARARETGLFAPYGVDASDVPVPEGWKIDTFALPYDYGYFAFVYDKTKLKNPPKSLKDLVEPEY 156 (336)
T ss_pred CCCCCCCEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECHHHHCCCCCCHHHHCCCCC
T ss_conf 78988858993472778888855876667898557888765356751012454128999765775287626898638512
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHC-CCCHHHHHHHHHHCCCEEECCCHHHHHHHHCCCCCEEEEECCHHHHHHHHHCC
Q ss_conf 68289850476530367899998717-73137898777628846830847898886225865699950449999985079
Q gi|254780561|r 160 PWKIIYQDPRTSTLGLGLLLWIQKIY-GDNSAQVWKKIATKTATVTKGWTESYGFFLKGESDFVLSYSTSPGFYLLNYGQ 238 (338)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 238 (338)
T Consensus 157 ~~~ii~qdPrtSspGl~fLlW~~svyg~d~~~~~W~kL~~~~v~v~~gWSeaY~aFt~GEap~VLSYtTspay~~~~~~~ 236 (336)
T COG4143 157 AGKIIYQDPRTSSPGLGFLLWTISVYGEDGAPEAWAKLADNGVTVTKGWSEAYGAFTKGEAPLVLSYTTSPAYHVYPEKK 236 (336)
T ss_pred CCCEEECCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCEEECCCHHHHHHHHHCCCCCEEEEECCCCCHHCCCCCC
T ss_conf 69578069887884078899998763623189999999858868658679889887478655799860682210253200
Q ss_pred CCEEEEECCCCEEEEEEEEEEECCCCCHHHHHHHHHHHCCHHHHHHHHHCCCEEECCC-CCCCCHHHHCCCCCCCCCCCH
Q ss_conf 9737883169808888642433789998999999999639999999885045050557-658821341223222347898
Q gi|254780561|r 239 DDYVAALFSEGHYLQIEVAAQLVRSKQPQLAQEFMQFMISPSFQRILPTTNWMYPVVD-ISMPDVYQAIRIPQKSLRFNA 317 (338)
Q Consensus 239 ~~~~~~~~~eG~~~~~~~~~i~k~a~n~~~A~~Fi~flls~e~Q~~~a~~~~~~P~~~-~~~p~~~~~~~~~~~~~~~~~ 317 (338)
T Consensus 237 ~~~~a~~f~eG~ylqiEgaa~~k~~knp~LA~~F~~FmlS~e~Q~~ip~~nwm~Pa~~~~~Lp~~f~~~~~p~~~~~~~~ 316 (336)
T COG4143 237 DRYAAALFPEGHYLQVEGAAVLKGAKNPELADKFLQFMLSPEFQDAIPTTNWMYPAVKNVPLPAVFDALVKPAKTVSLSP 316 (336)
T ss_pred CCCCHHCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHCHHHHHHCCCCCEEEECCCCCCCCHHHHHHCCCCCCCCCCH
T ss_conf 22100117888536776653112799879999999997098778407845433234789868777885178987656899
Q ss_pred HHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999999999999998741
Q gi|254780561|r 318 EETTRYRNQWISSWQNAVSR 337 (338)
Q Consensus 318 ~~~~~~~~~~~~~W~~~v~~ 337 (338)
T Consensus 317 ~~v~~~~~~Wi~~W~~~v~~ 336 (336)
T COG4143 317 KEVAANRKAWISEWQRAVSR 336 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHC
T ss_conf 99999999999999998529