HHsearch alignment for GI: 254780561 and conserved domain: PRK10682
>PRK10682 putrescine transporter subunit: periplasmic-binding component of ABC superfamily; Provisional.
Probab=100.00 E-value=1.1e-43 Score=273.04 Aligned_cols=288 Identities=12% Similarity=0.175 Sum_probs=210.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHH
Q ss_conf 90279999999999999986146742348859999788778512233889999998848879999728868999788753
Q gi|254780561|r 1 MKKFARIVVGIMMITGVISYCTLDGLPAKPVLTVYTYNSFVADEGAGPKIKQAFERKCNCELKLIGLSDGVALLNKLRME 80 (338)
Q Consensus 1 MKk~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~i~~~Fek~~gikV~~~~~~~~~~~~~~~~a~ 80 (338)
T Consensus 1 ~~~~~~~~~~~l~~~~~~~~~~~~~aa~~~~Lnv~nW~~Yi~-----p~~i~~FeketGikV~~~~~~snee~~akl~ag 75 (370)
T PRK10682 1 MTALNKKWLSGLVAGALMAVSVGTLAAEQKTLHIYNWSDYIA-----PDTVANFEKETGIKVVYDVFDSNEVLEGKLMAG 75 (370)
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCHHHHCCCEEEEECCCCCCC-----HHHHHHHHHHHCCEEEEEECCCHHHHHHHHHCC
T ss_conf 931778899999999999985205664279799981676579-----779999999979889999549989999999669
Q ss_pred HCCCCCEEEECCCHHHHHHHHHHHCCCCCCCCHHH----CC-------CCCCCCCCCCCCEEEEEEHHHHCCCCCCC---
Q ss_conf 12664101101333789998875212613677000----21-------00012432115324310001100111245---
Q gi|254780561|r 81 GENSAADIVLGFDNNLIDLARKTGLFAKSNIDASQ----LK-------LPIKWDDDIFVPYDYGYLAFIYDKRQITQ--- 146 (338)
Q Consensus 81 ~~~~~~Dv~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~-------~~~~~~~~~~~~~~~~~~~~~y~~~~~~~--- 146 (338)
T Consensus 76 ~--~gyDvv~p-s~~~v~~~~~~gll~pLD~sklpN~~ni~p~~~~~~~~~dpg~~YsVPy~wGt~GI~Yn~d~v~~~~g 152 (370)
T PRK10682 76 S--TGFDLVVP-SASFLERQLTAGVFQPLDKSKLPNWKNLDPELLKLVAKHDPDNKYAMPYMWATTGIGYNVDKVKAVLG 152 (370)
T ss_pred C--CCCCEEEE-CHHHHHHHHHCCCCCCCCHHHCCCHHHCCHHHHHHHHCCCCCCEEEEEEEECCEEEEEECCCCCCCCC
T ss_conf 9--99988997-77999999976984647700086744429998841003699975998888422599997654422346
Q ss_pred ---CCCCHHHHCCCCCCCE-----EEEEECCCCCCHHHHHHHHHHHCCCC-------HHHHHHHHHHCCCEEECCCHHHH
Q ss_conf ---8764565212000682-----89850476530367899998717731-------37898777628846830847898
Q gi|254780561|r 147 ---PPKNFDELINSTKPWK-----IIYQDPRTSTLGLGLLLWIQKIYGDN-------SAQVWKKIATKTATVTKGWTESY 211 (338)
Q Consensus 147 ---~p~s~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 211 (338)
T Consensus 153 ~~~p~~sW~~l~~P~~~~k~k~~~v~~ld~~~~~~~~aL~~lG~~~n~~~~~d~~~aa~~~L~~~kp~v~~~~s--~~~~ 230 (370)
T PRK10682 153 EDAPVDSWDLVLKPENLEKLKSCGVSFLDAPEEIFATVLNYLGKDPNSTKADDYTGPATDLLLKLRPNIRYFHS--SQYI 230 (370)
T ss_pred CCCCCCHHHHHHCHHHHHHCCCCCEEEECCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCHHCCEECC--CHHH
T ss_conf 78884629986492756530358558976888999999997699989999999999999999971222441037--2889
Q ss_pred HHHHCCCCCEEEEECCHHHHHH----HHHCCCCEEEEECCCCEEEEEEEEEEECCCCCHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 8862258656999504499999----850799737883169808888642433789998999999999639999999885
Q gi|254780561|r 212 GFFLKGESDFVLSYSTSPGFYL----LNYGQDDYVAALFSEGHYLQIEVAAQLVRSKQPQLAQEFMQFMISPSFQRILPT 287 (338)
Q Consensus 212 ~~~~~g~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~eG~~~~~~~~~i~k~a~n~~~A~~Fi~flls~e~Q~~~a~ 287 (338)
T Consensus 231 ~~l~~Gei~~a~~wsGd~~~~~~~~~~~~~~~~i~yv~PkEG~~~w~D~~~Ipk~A~n~~~A~~FInf~l~Pe~aa~~~~ 310 (370)
T PRK10682 231 NDLANGDICVAIGWAGDVWQASNRAKEAKNGVNVSFSIPKEGAMAFFDVFAMPADAKNKDEAYQFLNYLLRPDVIAHISD 310 (370)
T ss_pred HHHHCCCEEEEEEECHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEEEEECCCCCHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 99854867999974089999999998635787069981588745888788886899996999999998509799999998
Q ss_pred CCCEEECCCCC
Q ss_conf 04505055765
Q gi|254780561|r 288 TNWMYPVVDIS 298 (338)
Q Consensus 288 ~~~~~P~~~~~ 298 (338)
T Consensus 311 ~~~y~~~n~~A 321 (370)
T PRK10682 311 HVFYANANKAA 321 (370)
T ss_pred HHCCCCHHHHH
T ss_conf 64788753898