HHsearch alignment for GI: 254780561 and conserved domain: TIGR03227
>TIGR03227 PhnS 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate binding protein. This ABC transporter periplasmic substrate binding protein component is found in a region of the salmonella typhimurium LT2 genome responsible for the catabolism of 2-aminoethylphosphonate via the phnWX pathway (GenProp0238). The protein contains a match to pfam01547 for the "Bacterial extracellular solute-binding protein" domain.
Probab=100.00 E-value=0 Score=339.93 Aligned_cols=318 Identities=16% Similarity=0.241 Sum_probs=261.9
Q ss_pred HHHHHHHCCCCCCCCCEEEEEECCCCC-CCHHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCC
Q ss_conf 999986146742348859999788778-5122338899999988488799997288689997887531266410110133
Q gi|254780561|r 15 TGVISYCTLDGLPAKPVLTVYTYNSFV-ADEGAGPKIKQAFERKCNCELKLIGLSDGVALLNKLRMEGENSAADIVLGFD 93 (338)
Q Consensus 15 ~~~~~~~~~~~~~~~~~l~v~~~~~~~-~~~~~~~~i~~~Fek~~gikV~~~~~~~~~~~~~~~~a~~~~~~~Dv~~~~~ 93 (338)
T Consensus 22 ~~~~~~-~~~~a~a~~~~~vy~~~~~~~~~~~~~~~~~~aFek~tGikV~~v~~~-sge~laRl~aEk~nPqaDVv~~~d 99 (367)
T TIGR03227 22 AALLQG-AAAPAQAAAVVLVYSADGLEDGDNSLYQDQFDAFEKAEGIKVNIVEAG-GGEVVERAAKEKGNPKADVIVTAP 99 (367)
T ss_pred HHHHHH-CCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCEEEEEECC-HHHHHHHHHHCCCCCCCEEEEECC
T ss_conf 999864-235554586599996466434443468887688888669838999897-799999999522799720999785
Q ss_pred HHHHHHHHHHHCCCCCCCCHHH-CCCCCCCCCCCCCCEEEEEEHHHHCCCCCCCCCCCHHHHCCCCCCCEEEEEECCCCC
Q ss_conf 3789998875212613677000-210001243211532431000110011124587645652120006828985047653
Q gi|254780561|r 94 NNLIDLARKTGLFAKSNIDASQ-LKLPIKWDDDIFVPYDYGYLAFIYDKRQITQPPKNFDELINSTKPWKIIYQDPRTST 172 (338)
Q Consensus 94 ~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~p~s~~~l~~~~~~~~~~~~~~~~~~ 172 (338)
T Consensus 100 -~~~~~A~~~GLl~py~~~~~~~ip~~~k~~dg~~~~~~~~~~~~~yN~~~~k~~PkSW~DL~dP~ykgkI~~~dP~tS~ 178 (367)
T TIGR03227 100 -PFIQQAAAEGLLANFNSDAAKAIPAIAKAADGLWAPFVKNYFSFAINPKLLKSAPASFADLLDADFKGKLAYSNPAQAA 178 (367)
T ss_pred -HHHHHHHHCCCCCCCCCCCHHHCCHHHHCCCCCEEEEECCEEEEEEEHHHHCCCCCCHHHHHCCCCCCEEEECCCCCCH
T ss_conf -7999999788956278966455777663779838988555799999857705799889987285337828952877661
Q ss_pred CHHHHHHHHHHHCC--CCHHHHHHHHHHCCCEEECCCHHHHHHHHCCCCCEEEEECCHHHHHHHHHCCCCEEEEECC---
Q ss_conf 03678999987177--3137898777628846830847898886225865699950449999985079973788316---
Q gi|254780561|r 173 LGLGLLLWIQKIYG--DNSAQVWKKIATKTATVTKGWTESYGFFLKGESDFVLSYSTSPGFYLLNYGQDDYVAALFS--- 247 (338)
Q Consensus 173 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 247 (338)
T Consensus 179 ~g~~~l~~~~~~~G~eD~a~~~~~~L~~N~~~~~~s~~~~~~~~~~GE~~va~g~~~~-~~~~~~~~g~~v~~v~P~~~~ 257 (367)
T TIGR03227 179 DGMAVIILAFALFGSEDAAFAYLAKLEANNKFHSAGTGKLNALLNKGEIAVANGDLQM-DLADAEHGGLNIKIFFPAADA 257 (367)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCEECCCCHHHHHHHHCCCEEEEEEECCH-HHHHHHHCCCCCEEEEECCCC
T ss_conf 7999999999970985388999998874486724781799999857867899520204-367776279970289546777
Q ss_pred ---CCEEEEEEEEEEECCCCCHHHHHHHHHHHCCHHHHHHHHHCCCEEECCCCCC-CCHH----HHCCCCCCCCCCCHHH
Q ss_conf ---9808888642433789998999999999639999999885045050557658-8213----4122322234789899
Q gi|254780561|r 248 ---EGHYLQIEVAAQLVRSKQPQLAQEFMQFMISPSFQRILPTTNWMYPVVDISM-PDVY----QAIRIPQKSLRFNAEE 319 (338)
Q Consensus 248 ---eG~~~~~~~~~i~k~a~n~~~A~~Fi~flls~e~Q~~~a~~~~~~P~~~~~~-p~~~----~~~~~~~~~~~~~~~~ 319 (338)
T Consensus 258 g~~~g~~~i~~~i~ivKga~n~e~AkkfidflLS~e~Q~~~a~~~~~~Pv~~~v~l~~~~~~~~~~~~~~~kl~~~Dw~~ 337 (367)
T TIGR03227 258 GEPPSAFAIPYAIGLVKGAPNQDAGKKLIDFLLSADAQAKVPDLSFGIPGRSDVPLSDEHGEAAKAAIAGVKLIPPDWDA 337 (367)
T ss_pred CCCCCEEEEEEHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCEEECCCHHH
T ss_conf 88873487522034644999989999999997299999999986016767788769835554221332335111589999
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999874
Q gi|254780561|r 320 TTRYRNQWISSWQNAVS 336 (338)
Q Consensus 320 ~~~~~~~~~~~W~~~v~ 336 (338)
T Consensus 338 i~~~r~~wi~rW~~eV~ 354 (367)
T TIGR03227 338 VAAKKPADIERWHKEVI 354 (367)
T ss_pred HHHHHHHHHHHHHHHHC
T ss_conf 99878999999999857