Query gi|254780562|ref|YP_003064975.1| hypothetical protein CLIBASIA_02245 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 77
No_of_seqs 106 out of 1289
Neff 5.8
Searched_HMMs 23785
Date Tue May 31 18:55:21 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780562.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2o5a_A BH1328 protein; BHR21, 99.7 2.6E-18 1.1E-22 119.1 7.4 61 16-77 3-63 (125)
2 2id1_A Hypothetical protein; a 99.7 9E-18 3.8E-22 116.2 7.8 62 15-77 2-63 (130)
3 2zos_A MPGP, mannosyl-3-phosph 27.7 34 0.0014 15.5 2.7 20 50-69 35-54 (249)
4 2qw7_A Carbon dioxide concentr 27.0 24 0.001 16.4 1.8 31 30-62 36-66 (111)
5 1xvi_A MPGP, YEDP, putative ma 26.2 31 0.0013 15.8 2.2 18 50-67 44-61 (275)
6 2rcf_A Unidentified carboxysom 25.3 39 0.0016 15.2 3.4 31 31-63 32-62 (91)
7 2hd3_A Ethanolamine utilizatio 23.5 31 0.0013 15.7 1.8 33 29-63 35-67 (103)
8 1ges_A Glutathione reductase; 21.7 46 0.002 14.8 4.0 22 38-60 123-144 (450)
9 3f9r_A Phosphomannomutase; try 19.6 52 0.0022 14.5 2.6 17 50-66 39-55 (246)
10 2ywl_A Thioredoxin reductase r 19.3 38 0.0016 15.3 1.5 23 37-60 89-111 (180)
No 1
>2o5a_A BH1328 protein; BHR21, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.70A {Bacillus halodurans} SCOP: d.218.1.12
Probab=99.74 E-value=2.6e-18 Score=119.11 Aligned_cols=61 Identities=25% Similarity=0.357 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHCEEEEEEECCHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999999999984368634989804888720008788951886899999999999997439
Q gi|254780562|r 16 LDSCIATVMECLKELKAEDICHIENTSLRSLICDNMVIVSGRSTKHVASIADNLISYLKKKN 77 (77)
Q Consensus 16 ~~~~l~~i~~~l~dkKa~dI~~ldv~~~~s~~~D~fVIatg~S~rhv~Aia~~v~~~lk~~n 77 (77)
.+++++.++++|+|+||+||+++|+++ .|+++||||||||+|.||++|||++|.+.+|+++
T Consensus 3 ~~el~~~i~~~l~dkKa~DI~vldv~~-~s~~~Dy~VIaT~~S~rh~~aia~~v~~~lk~~~ 63 (125)
T 2o5a_A 3 NQELLQLAVNAVDDKKAEQVVALNMKG-ISLIADFFLICHGNSEKQVQAIAHELKKVAQEQG 63 (125)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEEECBT-TBC--CEEEEEEESSHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHCCCCCEEEEECCC-CCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCC
T ss_conf 799999999999974898659997789-9743278999986779999999999999999839
No 2
>2id1_A Hypothetical protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 3.00A {Chromobacterium violaceum atcc 12472} SCOP: d.218.1.12
Probab=99.72 E-value=9e-18 Score=116.20 Aligned_cols=62 Identities=19% Similarity=0.434 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHCEEEEEEECCHHHHHHHHHHHHHHHHHCC
Q ss_conf 999999999999984368634989804888720008788951886899999999999997439
Q gi|254780562|r 15 HLDSCIATVMECLKELKAEDICHIENTSLRSLICDNMVIVSGRSTKHVASIADNLISYLKKKN 77 (77)
Q Consensus 15 ~~~~~l~~i~~~l~dkKa~dI~~ldv~~~~s~~~D~fVIatg~S~rhv~Aia~~v~~~lk~~n 77 (77)
+.+++.+.|+++|+++||+||++||+++ .|+++||||||||+|.||++||+++|.+.+|+.+
T Consensus 2 ~~~el~~~iv~~L~~~Ka~DI~vlDv~~-~~~~~Dy~VI~Tg~S~rh~~aia~~v~~~lk~~~ 63 (130)
T 2id1_A 2 EIQEISKLAIEALEDIKGKDIIELDTSK-LTSLFQRMIVATGDSNRQVKALANSVQVKLKEAG 63 (130)
T ss_dssp CHHHHHHHHHHHHHHTTCEEEEEEEGGG-TCSSCSEEEEEECSSHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHCCCCCEEEEECCC-CCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCC
T ss_conf 8899999999999973888759998889-9750378999983868999999999999999839
No 3
>2zos_A MPGP, mannosyl-3-phosphoglycerate phosphatase; haloacid dehalogenase like hydrolase, mannosylglycerate, cytoplasm, hydrolase, magnesium; 1.70A {Pyrococcus horikoshii} PDB: 1wzc_A
Probab=27.70 E-value=34 Score=15.51 Aligned_cols=20 Identities=10% Similarity=0.212 Sum_probs=14.2
Q ss_pred EEEEEEECCHHHHHHHHHHH
Q ss_conf 87889518868999999999
Q gi|254780562|r 50 NMVIVSGRSTKHVASIADNL 69 (77)
Q Consensus 50 ~fVIatg~S~rhv~Aia~~v 69 (77)
.|++|||++.+-+..+...+
T Consensus 35 ~v~iaTGR~~~~~~~~~~~l 54 (249)
T 2zos_A 35 EIIFNSSKTRAEQEYYRKEL 54 (249)
T ss_dssp EEEEBCSSCHHHHHHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHH
T ss_conf 89999388899999999983
No 4
>2qw7_A Carbon dioxide concentrating mechanism protein CCML; pentamer, structural protein; HET: GOL; 2.40A {Synechocystis SP} SCOP: b.40.15.1
Probab=27.01 E-value=24 Score=16.36 Aligned_cols=31 Identities=3% Similarity=-0.062 Sum_probs=24.7
Q ss_pred CCCCCEEEEEECCCCCCHHCEEEEEEECCHHHH
Q ss_conf 368634989804888720008788951886899
Q gi|254780562|r 30 LKAEDICHIENTSLRSLICDNMVIVSGRSTKHV 62 (77)
Q Consensus 30 kKa~dI~~ldv~~~~s~~~D~fVIatg~S~rhv 62 (77)
..++-++++|.- | .-..|+.++++|+|.|+.
T Consensus 36 ~~g~~~VAvD~v-G-AG~Ge~Vlv~~Gs~Ar~~ 66 (111)
T 2qw7_A 36 PLERYEVAGDVV-G-AGLNEWVLVARGSAARKE 66 (111)
T ss_dssp EEEEEEEEEESS-C-CCTTCEEEEEEGGGGGCS
T ss_pred CCCCEEEEEECC-C-CCCCCEEEEECCHHHHHH
T ss_conf 589989999898-9-899999999686799644
No 5
>1xvi_A MPGP, YEDP, putative mannosyl-3-phosphoglycerate phosphatase; hypothetical protein, conserved protein, phophatase-like domain; HET: 1PE PG4 PGE; 2.26A {Escherichia coli K12} SCOP: c.108.1.10
Probab=26.15 E-value=31 Score=15.75 Aligned_cols=18 Identities=6% Similarity=0.307 Sum_probs=10.5
Q ss_pred EEEEEEECCHHHHHHHHH
Q ss_conf 878895188689999999
Q gi|254780562|r 50 NMVIVSGRSTKHVASIAD 67 (77)
Q Consensus 50 ~fVIatg~S~rhv~Aia~ 67 (77)
.|+||||++...+..+..
T Consensus 44 ~v~iaTGR~~~~~~~~~~ 61 (275)
T 1xvi_A 44 PVILCSSKTSAEMLYLQK 61 (275)
T ss_dssp CEEEECSSCHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHH
T ss_conf 999987999899999999
No 6
>2rcf_A Unidentified carboxysome polypeptide; cyclic pentamer, structural protein; 2.15A {Halothiobacillus neapolitanus} SCOP: b.40.15.1
Probab=25.27 E-value=39 Score=15.20 Aligned_cols=31 Identities=13% Similarity=0.124 Sum_probs=24.8
Q ss_pred CCCCEEEEEECCCCCCHHCEEEEEEECCHHHHH
Q ss_conf 686349898048887200087889518868999
Q gi|254780562|r 31 KAEDICHIENTSLRSLICDNMVIVSGRSTKHVA 63 (77)
Q Consensus 31 Ka~dI~~ldv~~~~s~~~D~fVIatg~S~rhv~ 63 (77)
.+.-++++|.- | .-..|+.++++|++.|+.-
T Consensus 32 ~g~~~VAvD~v-G-AG~Ge~Vlv~~GsaAr~~~ 62 (91)
T 2rcf_A 32 GAPRQVAVDAI-G-CIPGDWVLCVGSSAAREAA 62 (91)
T ss_dssp TSCCEEEEESS-C-CCTTCEEEEEETTHHHHHT
T ss_pred CCCEEEEEECC-C-CCCCCEEEEECCHHHHHHC
T ss_conf 99779999777-8-8999999995788987551
No 7
>2hd3_A Ethanolamine utilization protein EUTN; beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Escherichia coli CFT073} SCOP: b.40.15.1 PDB: 2z9h_A
Probab=23.55 E-value=31 Score=15.71 Aligned_cols=33 Identities=18% Similarity=0.198 Sum_probs=26.0
Q ss_pred HCCCCCEEEEEECCCCCCHHCEEEEEEECCHHHHH
Q ss_conf 43686349898048887200087889518868999
Q gi|254780562|r 29 ELKAEDICHIENTSLRSLICDNMVIVSGRSTKHVA 63 (77)
Q Consensus 29 dkKa~dI~~ldv~~~~s~~~D~fVIatg~S~rhv~ 63 (77)
+..++-++++|-- | .-..|+.++++|+|.|+..
T Consensus 35 ~~~g~~~VAvD~v-G-AG~Ge~Vlv~~Gs~Ar~~~ 67 (103)
T 2hd3_A 35 NPDGQCAVAIDNI-G-AGTGEWVLLVSGSSARQAH 67 (103)
T ss_dssp CEEEEEEEEEESS-C-CCTTCEEEEEETHHHHHHH
T ss_pred CCCCCEEEEEECC-C-CCCCCEEEEECCHHHHHHC
T ss_conf 8689989999898-9-8899999996888997250
No 8
>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*
Probab=21.66 E-value=46 Score=14.79 Aligned_cols=22 Identities=18% Similarity=0.406 Sum_probs=14.7
Q ss_pred EEECCCCCCHHCEEEEEEECCHH
Q ss_conf 98048887200087889518868
Q gi|254780562|r 38 IENTSLRSLICDNMVIVSGRSTK 60 (77)
Q Consensus 38 ldv~~~~s~~~D~fVIatg~S~r 60 (77)
+.+ .+...-+|++|||||.+.+
T Consensus 123 v~v-~~~~i~~~~liiATGs~p~ 144 (450)
T 1ges_A 123 LEV-NGETITADHILIATGGRPS 144 (450)
T ss_dssp EEE-TTEEEEEEEEEECCCEEEC
T ss_pred EEE-CCEEEECCEEEECCCCCCC
T ss_conf 999-9999983889998889877
No 9
>3f9r_A Phosphomannomutase; trypanosome glycobiology structural genomics, isomerase, structural genomics consortium, SGC; 1.85A {Trypanosoma brucei} PDB: 2i54_A* 2i55_A*
Probab=19.57 E-value=52 Score=14.54 Aligned_cols=17 Identities=12% Similarity=0.009 Sum_probs=12.5
Q ss_pred EEEEEEECCHHHHHHHH
Q ss_conf 87889518868999999
Q gi|254780562|r 50 NMVIVSGRSTKHVASIA 66 (77)
Q Consensus 50 ~fVIatg~S~rhv~Aia 66 (77)
.|++|||+|-+.+....
T Consensus 39 ~v~~~TGR~~~~~~~~~ 55 (246)
T 3f9r_A 39 CVGTVGGSDFAKQVEQL 55 (246)
T ss_dssp EEEEECSSCHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHH
T ss_conf 99998899989878888
No 10
>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus HB8} PDB: 2cvj_A*
Probab=19.30 E-value=38 Score=15.27 Aligned_cols=23 Identities=4% Similarity=0.173 Sum_probs=15.3
Q ss_pred EEEECCCCCCHHCEEEEEEECCHH
Q ss_conf 898048887200087889518868
Q gi|254780562|r 37 HIENTSLRSLICDNMVIVSGRSTK 60 (77)
Q Consensus 37 ~ldv~~~~s~~~D~fVIatg~S~r 60 (77)
.+...++ +.-+|+.|||||.+.+
T Consensus 89 ~v~t~~g-~~~a~~vIiAtG~~p~ 111 (180)
T 2ywl_A 89 EVETEEG-VEKAERLLLCTHKDPT 111 (180)
T ss_dssp EEECSSC-EEEEEEEEECCTTCCH
T ss_pred EEECCCC-CEECCEEEEEECCCCC
T ss_conf 6762588-4736999998388578
Done!