RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780562|ref|YP_003064975.1| hypothetical protein
CLIBASIA_02245 [Candidatus Liberibacter asiaticus str. psy62]
         (77 letters)



>gnl|CDD|145515 pfam02410, DUF143, Domain of unknown function DUF143.  This
          domain has no known function nor do any of the proteins
          that possess it. The aligned region is approximately
          100 amino acids long.
          Length = 99

 Score = 59.1 bits (144), Expect = 3e-10
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 1/58 (1%)

Query: 20 IATVMECLKELKAEDICHIENTSLRSLICDNMVIVSGRSTKHVASIADNLISYLKKKN 77
          +  +++ L + KAEDI  + + S +S I D  VI +G S +HV +IADN+   LK+  
Sbjct: 2  LELIVKALDDKKAEDIVVL-DVSEKSSIADYFVIATGTSDRHVKAIADNVEEELKEAG 58


>gnl|CDD|31142 COG0799, COG0799, Uncharacterized homolog of plant Iojap protein
          [Function unknown].
          Length = 115

 Score = 54.9 bits (132), Expect = 5e-09
 Identities = 22/57 (38%), Positives = 36/57 (63%), Gaps = 1/57 (1%)

Query: 20 IATVMECLKELKAEDICHIENTSLRSLICDNMVIVSGRSTKHVASIADNLISYLKKK 76
          +  ++E L + KAEDI  + + S +S + D  VI +G S++HV +IADN+   LK+ 
Sbjct: 7  LEVIVEALDDKKAEDIVVL-DVSGKSSLTDYFVIATGNSSRHVKAIADNVKEELKEA 62


>gnl|CDD|38422 KOG3212, KOG3212, KOG3212, Uncharacterized conserved protein
           related to IojAP [Function unknown].
          Length = 208

 Score = 37.3 bits (86), Expect = 0.001
 Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 3/64 (4%)

Query: 13  ADHLDSCIATVMECLKELKAEDICHIENTSLRSLICDNMVIVSGRSTKHVASIADNLISY 72
           +DHL   +  V++ L++  A+D+  I          D+ VI SGRS +H+ +IA+ L+  
Sbjct: 66  SDHL--TVEEVVKLLRDENADDVFVIP-VPEEMFYADHTVICSGRSDRHLRAIAEALVYM 122

Query: 73  LKKK 76
            K K
Sbjct: 123 AKIK 126


>gnl|CDD|145962 pfam03098, An_peroxidase, Animal haem peroxidase. 
          Length = 512

 Score = 28.0 bits (63), Expect = 0.55
 Identities = 7/18 (38%), Positives = 11/18 (61%)

Query: 38  IENTSLRSLICDNMVIVS 55
           I  T+L  +ICDN   ++
Sbjct: 488 IRKTTLARVICDNTPGIT 505


>gnl|CDD|143907 pfam00135, COesterase, Carboxylesterase. 
          Length = 517

 Score = 25.4 bits (56), Expect = 3.9
 Identities = 6/16 (37%), Positives = 12/16 (75%)

Query: 20  IATVMECLKELKAEDI 35
            A ++ECL++  AE++
Sbjct: 256 SAELVECLRKKSAEEL 271


>gnl|CDD|37619 KOG2408, KOG2408, KOG2408, Peroxidase/oxygenase [General function
           prediction only].
          Length = 719

 Score = 25.0 bits (54), Expect = 4.7
 Identities = 11/46 (23%), Positives = 16/46 (34%)

Query: 30  LKAEDICHIENTSLRSLICDNMVIVSGRSTKHVASIADNLISYLKK 75
              E +  I   SL  +ICDN   ++  S   V    D     +  
Sbjct: 659 FTPEQLEEIRKVSLARIICDNGTKITKVSRFDVFDFPDAPNDPVPC 704


>gnl|CDD|113842 pfam05087, Rota_VP2, Rotavirus VP2 protein.  Rotavirus particles
           consist of three concentric proteinaceous capsid layers.
           The innermost capsid (core) is made of VP2. The genomic
           RNA and the two minor proteins VP1 and VP3 are
           encapsidated within this layer. The N-terminus of
           rotavirus VP2 is necessary for the encapsidation of VP1
           and VP3.
          Length = 887

 Score = 24.1 bits (52), Expect = 7.8
 Identities = 16/56 (28%), Positives = 24/56 (42%)

Query: 16  LDSCIATVMECLKELKAEDICHIENTSLRSLICDNMVIVSGRSTKHVASIADNLIS 71
           L +CI   M+ ++ L  E +     TSL  LI +  VI    +  H  S   N  +
Sbjct: 564 LMACITMNMQLVQTLTTERLQLTSVTSLCMLIGNKTVIPEPSTLFHYYSSNVNFHT 619


>gnl|CDD|146419 pfam03767, Acid_phosphat_B, HAD superfamily, subfamily IIIB (Acid
           phosphatase).  This family proteins includes acid
           phosphatases and a number of vegetative storage
           proteins.
          Length = 230

 Score = 24.3 bits (53), Expect = 7.9
 Identities = 8/22 (36%), Positives = 11/22 (50%)

Query: 51  MVIVSGRSTKHVASIADNLISY 72
           +  VSGRS    A+  +NL   
Sbjct: 139 IFFVSGRSEDLRAATVENLKKA 160


>gnl|CDD|144479 pfam00898, Orbi_VP2, Orbivirus outer capsid protein VP2.  VP2 acts
           as an anchor for VP1 and VP3. VP2 contains a
           non-specific DNA and RNA binding domain in the
           N-terminus.
          Length = 946

 Score = 23.9 bits (52), Expect = 9.5
 Identities = 5/20 (25%), Positives = 12/20 (60%)

Query: 28  KELKAEDICHIENTSLRSLI 47
            ++KA ++C I +   R ++
Sbjct: 257 TKIKALELCKILSAIGRKML 276


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.317    0.127    0.354 

Gapped
Lambda     K      H
   0.267   0.0583    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 764,856
Number of extensions: 28639
Number of successful extensions: 83
Number of sequences better than 10.0: 1
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 11
Length of query: 77
Length of database: 6,263,737
Length adjustment: 47
Effective length of query: 30
Effective length of database: 5,248,114
Effective search space: 157443420
Effective search space used: 157443420
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.7 bits)