RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780562|ref|YP_003064975.1| hypothetical protein
CLIBASIA_02245 [Candidatus Liberibacter asiaticus str. psy62]
         (77 letters)



>2o5a_A BH1328 protein; BHR21, NESG, structural genomics, PSI-2,
          protein structure initiative, northeast structural
          genomics consortium; 2.70A {Bacillus halodurans} (A:)
          Length = 125

 Score = 53.3 bits (128), Expect = 1e-08
 Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 20 IATVMECLKELKAEDICHIENTSLRSLICDNMVIVSGRSTKHVASIADNLISYLKKKN 77
          +   +  + + KAE +  +    +   I D  +I  G S K V +IA  L    +++ 
Sbjct: 7  LQLAVNAVDDKKAEQVVALNXKGISL-IADFFLICHGNSEKQVQAIAHELKKVAQEQG 63


>2id1_A Hypothetical protein; alpha-beta protein, structural
          genomics, PSI-2, protein structure initiative; 3.00A
          {Chromobacterium violaceum atcc 12472} (A:)
          Length = 130

 Score = 49.8 bits (119), Expect = 1e-07
 Identities = 13/58 (22%), Positives = 32/58 (55%), Gaps = 1/58 (1%)

Query: 20 IATVMECLKELKAEDICHIENTSLRSLICDNMVIVSGRSTKHVASIADNLISYLKKKN 77
              +E L+++K +DI  + +TS  + +    ++ +G S + V ++A+++   LK+  
Sbjct: 7  SKLAIEALEDIKGKDIIEL-DTSKLTSLFQRXIVATGDSNRQVKALANSVQVKLKEAG 63


>2gj1_A Lactoperoxidase, LPO; oxidoreductase, metal-binding protein;
           HET: NAG MAN HEM; 2.30A {Bos taurus} PDB: 3bxi_A*
           2ips_A* 2nqx_A* 2pum_A* 2qpk_A* 2qqt_A* 2qrb_A* 2pt3_A*
           3eri_A* 3gc1_A* 3gcj_A* 3gck_A* 3gcl_A* 3i6n_A* 3erh_A*
           3faq_A* 2gjm_A* 3fnl_A* 2z5z_A* 2o86_A* ...
           (A:221-405,A:520-583)
          Length = 249

 Score = 24.6 bits (53), Expect = 4.4
 Identities = 6/13 (46%), Positives = 8/13 (61%)

Query: 38  IENTSLRSLICDN 50
           ++  S   LICDN
Sbjct: 198 LQKVSFSRLICDN 210


>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural
           genomics, NPPSFA, national project on protein structural
           and functional analyses; 2.30A {Pseudomonas stutzeri}
           (A:1-69,A:325-453)
          Length = 198

 Score = 24.4 bits (53), Expect = 4.8
 Identities = 5/22 (22%), Positives = 9/22 (40%)

Query: 12  TADHLDSCIATVMECLKELKAE 33
             +H++  + T    L  L  E
Sbjct: 162 EREHVEHLVTTFDRVLDRLADE 183


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.317    0.127    0.354 

Gapped
Lambda     K      H
   0.267   0.0728    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 481,275
Number of extensions: 15235
Number of successful extensions: 88
Number of sequences better than 10.0: 1
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 5
Length of query: 77
Length of database: 4,956,049
Length adjustment: 42
Effective length of query: 35
Effective length of database: 3,536,239
Effective search space: 123768365
Effective search space used: 123768365
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.0 bits)