RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780562|ref|YP_003064975.1| hypothetical protein CLIBASIA_02245 [Candidatus Liberibacter asiaticus str. psy62] (77 letters) >2o5a_A BH1328 protein; BHR21, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.70A {Bacillus halodurans} (A:) Length = 125 Score = 53.3 bits (128), Expect = 1e-08 Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 1/58 (1%) Query: 20 IATVMECLKELKAEDICHIENTSLRSLICDNMVIVSGRSTKHVASIADNLISYLKKKN 77 + + + + KAE + + + I D +I G S K V +IA L +++ Sbjct: 7 LQLAVNAVDDKKAEQVVALNXKGISL-IADFFLICHGNSEKQVQAIAHELKKVAQEQG 63 >2id1_A Hypothetical protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 3.00A {Chromobacterium violaceum atcc 12472} (A:) Length = 130 Score = 49.8 bits (119), Expect = 1e-07 Identities = 13/58 (22%), Positives = 32/58 (55%), Gaps = 1/58 (1%) Query: 20 IATVMECLKELKAEDICHIENTSLRSLICDNMVIVSGRSTKHVASIADNLISYLKKKN 77 +E L+++K +DI + +TS + + ++ +G S + V ++A+++ LK+ Sbjct: 7 SKLAIEALEDIKGKDIIEL-DTSKLTSLFQRXIVATGDSNRQVKALANSVQVKLKEAG 63 >2gj1_A Lactoperoxidase, LPO; oxidoreductase, metal-binding protein; HET: NAG MAN HEM; 2.30A {Bos taurus} PDB: 3bxi_A* 2ips_A* 2nqx_A* 2pum_A* 2qpk_A* 2qqt_A* 2qrb_A* 2pt3_A* 3eri_A* 3gc1_A* 3gcj_A* 3gck_A* 3gcl_A* 3i6n_A* 3erh_A* 3faq_A* 2gjm_A* 3fnl_A* 2z5z_A* 2o86_A* ... (A:221-405,A:520-583) Length = 249 Score = 24.6 bits (53), Expect = 4.4 Identities = 6/13 (46%), Positives = 8/13 (61%) Query: 38 IENTSLRSLICDN 50 ++ S LICDN Sbjct: 198 LQKVSFSRLICDN 210 >2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.30A {Pseudomonas stutzeri} (A:1-69,A:325-453) Length = 198 Score = 24.4 bits (53), Expect = 4.8 Identities = 5/22 (22%), Positives = 9/22 (40%) Query: 12 TADHLDSCIATVMECLKELKAE 33 +H++ + T L L E Sbjct: 162 EREHVEHLVTTFDRVLDRLADE 183 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.317 0.127 0.354 Gapped Lambda K H 0.267 0.0728 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 481,275 Number of extensions: 15235 Number of successful extensions: 88 Number of sequences better than 10.0: 1 Number of HSP's gapped: 86 Number of HSP's successfully gapped: 5 Length of query: 77 Length of database: 4,956,049 Length adjustment: 42 Effective length of query: 35 Effective length of database: 3,536,239 Effective search space: 123768365 Effective search space used: 123768365 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 50 (23.0 bits)