RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780562|ref|YP_003064975.1| hypothetical protein
CLIBASIA_02245 [Candidatus Liberibacter asiaticus str. psy62]
         (77 letters)



>2o5a_A BH1328 protein; BHR21, NESG, structural genomics, PSI-2, protein
          structure initiative, northeast structural genomics
          consortium; 2.70A {Bacillus halodurans} SCOP:
          d.218.1.12
          Length = 125

 Score = 45.7 bits (108), Expect = 3e-06
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 20 IATVMECLKELKAEDICHIENTSLRSLICDNMVIVSGRSTKHVASIADNLISYLKKKN 77
          +   +  + + KAE +  + N    SLI D  +I  G S K V +IA  L    +++ 
Sbjct: 7  LQLAVNAVDDKKAEQVVAL-NMKGISLIADFFLICHGNSEKQVQAIAHELKKVAQEQG 63


>2id1_A Hypothetical protein; alpha-beta protein, structural genomics,
          PSI-2, protein structure initiative; 3.00A
          {Chromobacterium violaceum atcc 12472} SCOP: d.218.1.12
          Length = 130

 Score = 41.6 bits (97), Expect = 4e-05
 Identities = 14/55 (25%), Positives = 33/55 (60%), Gaps = 1/55 (1%)

Query: 23 VMECLKELKAEDICHIENTSLRSLICDNMVIVSGRSTKHVASIADNLISYLKKKN 77
           +E L+++K +DI  + +TS  + +   M++ +G S + V ++A+++   LK+  
Sbjct: 10 AIEALEDIKGKDIIEL-DTSKLTSLFQRMIVATGDSNRQVKALANSVQVKLKEAG 63


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 37.3 bits (85), Expect = 9e-04
 Identities = 13/32 (40%), Positives = 13/32 (40%), Gaps = 14/32 (43%)

Query: 6  EKQA---LQT-----ADHLDS----CIATVME 25
          EKQA   LQ      AD  DS     I   ME
Sbjct: 18 EKQALKKLQASLKLYAD--DSAPALAIKATME 47


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 30.3 bits (68), Expect = 0.10
 Identities = 16/81 (19%), Positives = 29/81 (35%), Gaps = 18/81 (22%)

Query: 9   ALQTADHLDS---CIATVMECLKELKAEDICH--IENTSLRSLI----CDN-------MV 52
           A+   D  +S    +   +  L  +     C+    NTSL   I     +N       M+
Sbjct: 282 AIAETDSWESFFVSVRKAITVLFFIGVR--CYEAYPNTSLPPSILEDSLENNEGVPSPML 339

Query: 53  IVSGRSTKHVASIADNLISYL 73
            +S  + + V    +   S+L
Sbjct: 340 SISNLTQEQVQDYVNKTNSHL 360



 Score = 26.1 bits (57), Expect = 1.9
 Identities = 8/38 (21%), Positives = 12/38 (31%), Gaps = 7/38 (18%)

Query: 4   NTEK--QALQT-----ADHLDSCIATVMECLKELKAED 34
           NT+   + L+         +   I    E L EL    
Sbjct: 165 NTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTT 202



 Score = 25.7 bits (56), Expect = 2.6
 Identities = 8/39 (20%), Positives = 14/39 (35%), Gaps = 9/39 (23%)

Query: 41 TSLRSLICDNMVIVSGRSTKHVASIADNLISY---LKKK 76
           S R L       +S  S +HV  +          L+++
Sbjct: 4  YSTRPL------TLSHGSLEHVLLVPTASFFIASQLQEQ 36


>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase,
           cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM;
           1.73A {Mus musculus} PDB: 3ntb_A* 1pxx_A* 3pgh_A*
           1cx2_A* 4cox_A* 5cox_A* 6cox_A* 3hs5_A* 3hs6_A* 3hs7_A*
           3krk_A* 1ddx_A* 1cvu_A*
          Length = 587

 Score = 30.3 bits (68), Expect = 0.11
 Identities = 7/14 (50%), Positives = 11/14 (78%)

Query: 38  IENTSLRSLICDNM 51
           I   S++SLIC+N+
Sbjct: 528 INTASIQSLICNNV 541


>1cvu_A Prostaglandin H2 synthase-2; COX-2, cyclooxygenase, prostaglandin,
           arachidonate, endoperoxide, oxidoreductase; HET: NAG MAN
           BOG ACD; 2.40A {Mus musculus} SCOP: a.93.1.2 g.3.11.1
           PDB: 3pgh_A* 1cx2_A* 4cox_A* 5cox_A* 6cox_A* 1pxx_A*
           1ddx_A*
          Length = 552

 Score = 29.4 bits (66), Expect = 0.20
 Identities = 7/14 (50%), Positives = 11/14 (78%)

Query: 38  IENTSLRSLICDNM 51
           I   S++SLIC+N+
Sbjct: 528 INTASIQSLICNNV 541


>3nyh_A Lactoperoxidase, LPO; bovine lactoperoxidase, oxidoreductase,
           bromide, chloride, I MPD, thiocyanate ION; HET: SEP HEM
           NAG MAN; 1.77A {Bos taurus} PDB: 2ips_A* 2nqx_A* 2pum_A*
           2qpk_A* 2qqt_A* 2qrb_A* 2pt3_A* 3eri_A* 3gc1_A* 3gcj_A*
           3gck_A* 3gcl_A* 3i6n_A* 3bxi_A* 3krq_A* 3erh_A* 3faq_A*
           3fnl_A* 2z5z_A* 2o86_A* ...
          Length = 595

 Score = 29.0 bits (64), Expect = 0.28
 Identities = 6/13 (46%), Positives = 8/13 (61%)

Query: 38  IENTSLRSLICDN 50
           ++  S   LICDN
Sbjct: 544 LQKVSFSRLICDN 556


>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal
           anti-inflammatory drug, peroxidase, prostaglandin
           synthase, EGF-like domain; HET: BOG NAG NDG BMA MAN BFL
           HEM; 2.00A {Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB:
           1diy_A* 2ayl_A* 3kk6_A* 2oyu_P* 2oye_P* 1eqg_A* 1cqe_A*
           1eqh_A* 1igz_A* 1igx_A* 1fe2_A* 1pge_A* 1pgf_A* 1pgg_A*
           1pth_A* 1u67_A* 1ht8_A* 1ebv_A* 1ht5_A* 1prh_A*
          Length = 553

 Score = 28.7 bits (64), Expect = 0.29
 Identities = 4/14 (28%), Positives = 9/14 (64%)

Query: 38  IENTSLRSLICDNM 51
           ++  +L+ L+C N 
Sbjct: 528 VKTATLKKLVCLNT 541


>2gj1_A Lactoperoxidase, LPO; oxidoreductase, metal-binding protein; HET:
           NAG MAN HEM; 2.30A {Bos taurus} PDB: 3bxi_A* 2ips_A*
           2nqx_A* 2pum_A* 2qpk_A* 2qqt_A* 2qrb_A* 2pt3_A* 3eri_A*
           3gc1_A* 3gcj_A* 3gck_A* 3gcl_A* 3i6n_A* 3erh_A* 3faq_A*
           2gjm_A* 3fnl_A* 2z5z_A* 2o86_A* ...
          Length = 583

 Score = 27.7 bits (61), Expect = 0.57
 Identities = 6/13 (46%), Positives = 8/13 (61%)

Query: 38  IENTSLRSLICDN 50
           ++  S   LICDN
Sbjct: 532 LQKVSFSRLICDN 544


>1d2v_C Myeloperoxidase; heme-protein, oxidoreductase, peroxidase- bromide
           complex; HET: NAG BMA MAN FUC HEM; 1.75A {Homo sapiens}
           SCOP: a.93.1.2 PDB: 1cxp_C* 1d5l_C* 1d7w_C* 1dnu_C*
           1dnw_C* 1mhl_C* 1myp_C* 3f9p_C*
          Length = 466

 Score = 27.3 bits (60), Expect = 0.82
 Identities = 7/18 (38%), Positives = 10/18 (55%)

Query: 38  IENTSLRSLICDNMVIVS 55
           +   SL  +ICDN  I +
Sbjct: 416 LAQISLPRIICDNTGITT 433


>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1,
           pyridoxal-5'-phosphate dependent racemase, pyridoxal
           phosphate, isomerase; HET: PLP; 2.21A {Achromobacter
           obae} PDB: 2zuk_A* 3dxw_A*
          Length = 452

 Score = 24.6 bits (53), Expect = 4.9
 Identities = 4/21 (19%), Positives = 7/21 (33%)

Query: 12  TADHLDSCIATVMECLKELKA 32
           T   +   +  +     EL A
Sbjct: 420 TETDIHKALDLLDRAFSELSA 440


>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics,
           NPPSFA, national project on protein structural and
           functional analyses; 2.30A {Pseudomonas stutzeri}
          Length = 453

 Score = 24.3 bits (51), Expect = 6.9
 Identities = 7/32 (21%), Positives = 15/32 (46%)

Query: 12  TADHLDSCIATVMECLKELKAEDICHIENTSL 43
             +H++  + T    L  L  E++   + T+L
Sbjct: 417 EREHVEHLVTTFDRVLDRLADENLLSWQGTNL 448


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.317    0.127    0.354 

Gapped
Lambda     K      H
   0.267   0.0506    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 558,959
Number of extensions: 18943
Number of successful extensions: 114
Number of sequences better than 10.0: 1
Number of HSP's gapped: 112
Number of HSP's successfully gapped: 29
Length of query: 77
Length of database: 5,693,230
Length adjustment: 46
Effective length of query: 31
Effective length of database: 4,578,006
Effective search space: 141918186
Effective search space used: 141918186
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.6 bits)