RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780562|ref|YP_003064975.1| hypothetical protein
CLIBASIA_02245 [Candidatus Liberibacter asiaticus str. psy62]
         (77 letters)



>d2o5aa1 d.218.1.12 (A:2-114) Uncharacterized protein BH1328
          {Bacillus halodurans [TaxId: 86665]}
          Length = 113

 Score = 45.3 bits (107), Expect = 1e-06
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 20 IATVMECLKELKAEDICHIENTSLRSLICDNMVIVSGRSTKHVASIADNLISYLKKKN 77
          +   +  + + KAE +  + N    SLI D  +I  G S K V +IA  L    +++ 
Sbjct: 6  LQLAVNAVDDKKAEQVVAL-NMKGISLIADFFLICHGNSEKQVQAIAHELKKVAQEQG 62


>d2id1a1 d.218.1.12 (A:1-120) Hypothetical protein CV0518
          {Chromobacterium violaceum [TaxId: 536]}
          Length = 120

 Score = 42.3 bits (99), Expect = 1e-05
 Identities = 14/55 (25%), Positives = 33/55 (60%), Gaps = 1/55 (1%)

Query: 23 VMECLKELKAEDICHIENTSLRSLICDNMVIVSGRSTKHVASIADNLISYLKKKN 77
           +E L+++K +DI  + +TS  + +   M++ +G S + V ++A+++   LK+  
Sbjct: 10 AIEALEDIKGKDIIEL-DTSKLTSLFQRMIVATGDSNRQVKALANSVQVKLKEAG 63


>d1cvua1 a.93.1.2 (A:74-583) Prostaglandin H2 synthase {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 511

 Score = 29.1 bits (65), Expect = 0.093
 Identities = 7/14 (50%), Positives = 11/14 (78%)

Query: 38  IENTSLRSLICDNM 51
           I   S++SLIC+N+
Sbjct: 487 INTASIQSLICNNV 500


>d1q4ga1 a.93.1.2 (A:74-584) Prostaglandin H2 synthase {Sheep (Ovis
           aries) [TaxId: 9940]}
          Length = 511

 Score = 28.8 bits (64), Expect = 0.14
 Identities = 4/14 (28%), Positives = 9/14 (64%)

Query: 38  IENTSLRSLICDNM 51
           ++  +L+ L+C N 
Sbjct: 486 VKTATLKKLVCLNT 499


>g1cxp.1 a.93.1.2 (A:,C:) Myeloperoxidase {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 570

 Score = 27.8 bits (61), Expect = 0.24
 Identities = 6/13 (46%), Positives = 8/13 (61%)

Query: 38  IENTSLRSLICDN 50
           +   SL  +ICDN
Sbjct: 520 LAQISLPRIICDN 532


>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase,
           GABA-aminotransferase {Escherichia coli [TaxId: 562]}
          Length = 425

 Score = 23.3 bits (49), Expect = 5.7
 Identities = 3/20 (15%), Positives = 7/20 (35%)

Query: 12  TADHLDSCIATVMECLKELK 31
               +   +  + +C  E K
Sbjct: 405 EDAQIRQGLEIISQCFDEAK 424


>d1dkua1 c.61.1.2 (A:8-166) Phosphoribosylpyrophosphate synthetase
          {Bacillus subtilis [TaxId: 1423]}
          Length = 159

 Score = 23.0 bits (49), Expect = 7.2
 Identities = 8/21 (38%), Positives = 11/21 (52%), Gaps = 1/21 (4%)

Query: 50 NMVIVSGRSTKHVA-SIADNL 69
          N+ I S  S   +A  IAD +
Sbjct: 1  NLKIFSLNSNPELAKEIADIV 21


>d1u9ya1 c.61.1.2 (A:1-155) Phosphoribosylpyrophosphate synthetase
          {Methanocaldococcus jannaschii [TaxId: 2190]}
          Length = 155

 Score = 22.7 bits (48), Expect = 9.4
 Identities = 7/20 (35%), Positives = 14/20 (70%), Gaps = 1/20 (5%)

Query: 51 MVIVSGRSTKHVA-SIADNL 69
          M++VSG  ++++A  +A  L
Sbjct: 1  MIVVSGSQSQNLAFKVAKLL 20


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.127    0.354 

Gapped
Lambda     K      H
   0.267   0.0517    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 245,452
Number of extensions: 8191
Number of successful extensions: 43
Number of sequences better than 10.0: 1
Number of HSP's gapped: 41
Number of HSP's successfully gapped: 17
Length of query: 77
Length of database: 2,407,596
Length adjustment: 44
Effective length of query: 33
Effective length of database: 1,803,476
Effective search space: 59514708
Effective search space used: 59514708
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.4 bits)