BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780562|ref|YP_003064975.1| hypothetical protein
CLIBASIA_02245 [Candidatus Liberibacter asiaticus str. psy62]
(77 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780562|ref|YP_003064975.1| hypothetical protein CLIBASIA_02245 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 77
Score = 155 bits (391), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 77/77 (100%), Positives = 77/77 (100%)
Query: 1 MLANTEKQALQTADHLDSCIATVMECLKELKAEDICHIENTSLRSLICDNMVIVSGRSTK 60
MLANTEKQALQTADHLDSCIATVMECLKELKAEDICHIENTSLRSLICDNMVIVSGRSTK
Sbjct: 1 MLANTEKQALQTADHLDSCIATVMECLKELKAEDICHIENTSLRSLICDNMVIVSGRSTK 60
Query: 61 HVASIADNLISYLKKKN 77
HVASIADNLISYLKKKN
Sbjct: 61 HVASIADNLISYLKKKN 77
>gi|254780277|ref|YP_003064690.1| DNA polymerase I [Candidatus Liberibacter asiaticus str. psy62]
Length = 976
Score = 28.1 bits (61), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 35 ICHIENTSLRSL---ICDNMVIVSGRSTKHVASIADNLISYLKKK 76
+ H S+R + + V+ SGRS+ +ASIA +SY +K+
Sbjct: 475 VLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE 519
>gi|254780952|ref|YP_003065365.1| DNA helicase II [Candidatus Liberibacter asiaticus str. psy62]
Length = 685
Score = 25.4 bits (54), Expect = 0.17, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 19 CIATVMECLKELKAEDICHIENTSLRSLICDNMVIVSG--RSTKHVASIADNLISYLKKK 76
C+ +C+ E + HI N + N++ + RST H+ + A+ LIS+ K++
Sbjct: 269 CVGDENQCIYEWRGAQFSHILNFQ-KDFKDANIIKLEQNYRSTTHILNTANKLISHNKQR 327
>gi|255764488|ref|YP_003065099.2| flagellar motor protein MotA [Candidatus Liberibacter asiaticus
str. psy62]
Length = 290
Score = 23.5 bits (49), Expect = 0.79, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Query: 38 IENTSLRSLICD--NMVIVSGRSTKHVASIAD---NLISYLKKK 76
+EN L + ICD M+IV + + ++ D ++I Y K K
Sbjct: 117 LENNELTTFICDYMRMIIVGNARSYEIENLMDEEIDIILYEKLK 160
>gi|254781108|ref|YP_003065521.1| von Willebrand factor type A [Candidatus Liberibacter asiaticus
str. psy62]
Length = 398
Score = 22.3 bits (46), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 24 MECLKELKAEDICHIENTSLRSLICDNMVIVSGRSTKHVASIADNL 69
++ + E KA+ EN L+ LI + +S RST + ++NL
Sbjct: 101 LQYIAESKAQYEIPTENLFLKGLIPSALTNLSLRSTGIIERSSENL 146
>gi|254781161|ref|YP_003065574.1| glutamate--cysteine ligase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 457
Score = 20.4 bits (41), Expect = 5.2, Method: Composition-based stats.
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 6 EKQALQTADHLDS 18
+ ALQ ADHL S
Sbjct: 347 DSSALQNADHLTS 359
>gi|254780274|ref|YP_003064687.1| lysophospholipase protein [Candidatus Liberibacter asiaticus str.
psy62]
Length = 317
Score = 20.4 bits (41), Expect = 6.1, Method: Composition-based stats.
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 39 ENTSLRSLICDNMVIVSGRSTKH 61
+NTS +++CD M + + S KH
Sbjct: 79 KNTSDTTIVCDVMKLRTLISEKH 101
>gi|254780740|ref|YP_003065153.1| peptidase S16 lon domain protein [Candidatus Liberibacter asiaticus
str. psy62]
Length = 221
Score = 20.4 bits (41), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 18/39 (46%)
Query: 2 LANTEKQALQTADHLDSCIATVMECLKELKAEDICHIEN 40
+ EKQAL A + T++ +K + A H EN
Sbjct: 180 FSEEEKQALLEAPDFRARAQTLIAIMKIVLARAYTHCEN 218
>gi|254780300|ref|YP_003064713.1| aspartate carbamoyltransferase catalytic subunit [Candidatus
Liberibacter asiaticus str. psy62]
Length = 316
Score = 20.0 bits (40), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 52 VIVSGRSTKHVASIADNLISYLKK 75
+I S R KHV S+ + + Y KK
Sbjct: 235 LIPSIREYKHVYSLDEKKLKYAKK 258
>gi|254780869|ref|YP_003065282.1| beta-lactamase domain-containing protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 559
Score = 20.0 bits (40), Expect = 7.9, Method: Composition-based stats.
Identities = 6/18 (33%), Positives = 12/18 (66%)
Query: 33 EDICHIENTSLRSLICDN 50
+ +C I N + +L+CD+
Sbjct: 181 DSLCAIGNEGILALMCDS 198
>gi|254780182|ref|YP_003064595.1| DNA gyrase subunit A [Candidatus Liberibacter asiaticus str. psy62]
Length = 910
Score = 20.0 bits (40), Expect = 8.7, Method: Composition-based stats.
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 41 TSLRSLICDNMVIVSG 56
TSL+SL NMV ++G
Sbjct: 331 TSLQSLFSVNMVALNG 346
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.317 0.127 0.354
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,222
Number of Sequences: 1233
Number of extensions: 1271
Number of successful extensions: 15
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of query: 77
length of database: 328,796
effective HSP length: 47
effective length of query: 30
effective length of database: 270,845
effective search space: 8125350
effective search space used: 8125350
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.3 bits)
S2: 31 (16.5 bits)