HHsearch alignment for GI: 254780563 and conserved domain: COG1840

Probab=99.90  E-value=2.1e-23  Score=153.22  Aligned_cols=147  Identities=20%  Similarity=0.187  Sum_probs=118.8

Q ss_pred             HHHHHHHHCCCCCCCCCHHHH---HHHHHHHCC--CCCEEEECCHHHHH--HHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             999999875986210000135---667652106--66557504223323--43310000123422234720001222223
Q gi|254780563|r   43 IIHSFEERTGVKISPIYTSSI---QRPPITQGS--PVDVIITKDETSLA--LNEDLLHKLPAHLIKKNSFVLKNENKKLM  115 (195)
Q Consensus        43 ~~~~Fek~tgIkV~~~~~~~~---~~~~~~~~~--~~d~~~~~d~~~l~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  115 (195)
T Consensus         1 ~~~~f~~~~gikv~~~~~~s~~~~~~~~~e~~~~~~aDv~~~~~~~~~~~l~~~gll~~y~~~~~~~i~~~~~~~~~~~~   80 (299)
T COG1840           1 LIKAFEKKPGIKVEFVDAGSGELLARIIAEKGNPQAADVLWGGAPVSLDQLKEAGLLQPYKSPELDEIPAWAPDPDGAYG   80 (299)
T ss_pred             CHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCCCCC
T ss_conf             95567337796689874884899999997224899881896068169999985797222698346565331346444665


Q ss_pred             CCCCCEEEEEEEHHHHCCCCC--CCCHHHHCCHHHCCEEEECCCCCCHHHHHHHHH--HHHCHHHHHHHHHHHHHCCCC
Q ss_conf             443450588873344013445--578888408667685996289830499999999--960869999999998608870
Q gi|254780563|r  116 RISFDTQVLAYSTKRIKIADL--PKSVFDLTNAQWKKRLSIAPNNISFHRLLNTME--QTPNKTVVQDFIKNITANEIL  190 (195)
Q Consensus       116 ~~~~~~~~~~~n~~~~~~~~~--P~sw~DL~~p~~kG~i~~~~~~~s~~~~~~a~~--~~~G~~~~~~~l~~l~~N~~~  190 (195)
T Consensus        81 ~~~~~~~~~~~n~~~~~~~~~~~P~~w~DL~~p~~kg~i~~~~p~~s~~~-~~~~~~~~~~G~~~~~~~l~~l~~n~~~  158 (299)
T COG1840          81 GGYVGPLVFAVNTDYNKDLLKPVPKSWADLAKPEYKGKVQMADPTSSGTA-YAALLALQAYGEEKGWAYLKGLAANLAT  158 (299)
T ss_pred             CCEEEEEEEEEEEECCCCCCCCCCCCHHHHHCHHHCCCEEEECCCCCHHH-HHHHHHHHHCCHHHHHHHHHHHHHHCCC
T ss_conf             64477899999611034456899867998709886698465478855899-9999999864879999999999985133